BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6783
         (1119 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|242009305|ref|XP_002425430.1| Arginyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212509247|gb|EEB12692.1| Arginyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 575

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/415 (58%), Positives = 298/415 (71%), Gaps = 24/415 (5%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           S+++ L  +F  A+Q AFPEL +    +A++N     KFGD+QCN AM + ++ K +G+K
Sbjct: 59  SIQNTLVSIFKEAIQRAFPELKNAPVVIAASNNS---KFGDYQCNSAMPIVQLLKSEGKK 115

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
            NP ++A+ I S V+           +I+K+EVA  GF+NV LSR      ++ I+ NGV
Sbjct: 116 SNPREVAEKIKSCVSPH--------NLIEKLEVAGAGFINVTLSRTEGQNCLQFILKNGV 167

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
            PP +N K RV+VDFSSPNIAKEMHVGHLRSTIIGD+IS LLE+LGHDVVR+NHVGDWGT
Sbjct: 168 LPPKVNAKCRVIVDFSSPNIAKEMHVGHLRSTIIGDSISNLLEFLGHDVVRVNHVGDWGT 227

Query: 386 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445
           QFGMLIAHL+DKFPDYLTKSPPI DLQAFYKESKKRFDEDE FKKRAY CVV LQ   PD
Sbjct: 228 QFGMLIAHLEDKFPDYLTKSPPIQDLQAFYKESKKRFDEDEAFKKRAYNCVVQLQSHHPD 287

Query: 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
           Y KAW +ICDVSR++FQKIY RL++ +TE+GESFYQ  ME+LV  LE K  L  D+GRKI
Sbjct: 288 YLKAWNLICDVSRKEFQKIYQRLDIRITEKGESFYQTRMEKLVKELEAKNFLVEDEGRKI 347

Query: 506 MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEES 565
           MWG D  SIP TIVKSDGGFTYDTSDLA I+ RIEEEKADWI+YVTD GQ  HF +L++ 
Sbjct: 348 MWG-DSSSIPFTIVKSDGGFTYDTSDLACIKYRIEEEKADWIIYVTDSGQSTHFDVLQKC 406

Query: 566 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
            I           L  + VR++ VG     FG+++   + KF     ++  + DL
Sbjct: 407 AIKCGI-------LNPEKVRIDFVG-----FGVVLGEDKKKFKTRSGETVRLVDL 449



 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/340 (65%), Positives = 258/340 (75%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+IS LLE+LGHDVVR+NHVGDWGTQFGMLIAHL+DKFPDYLTKSPPI DLQAFY
Sbjct: 198 STIIGDSISNLLEFLGHDVVRVNHVGDWGTQFGMLIAHLEDKFPDYLTKSPPIQDLQAFY 257

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY CVV LQ   PDY KAW +ICDVSR++FQKIY RL++ +TE+
Sbjct: 258 KESKKRFDEDEAFKKRAYNCVVQLQSHHPDYLKAWNLICDVSRKEFQKIYQRLDIRITEK 317

Query: 685 GESFYQKHMEQLVPYLEKKGNL------------------SLTKKLG------------- 713
           GESFYQ  ME+LV  LE K  L                  ++ K  G             
Sbjct: 318 GESFYQTRMEKLVKELEAKNFLVEDEGRKIMWGDSSSIPFTIVKSDGGFTYDTSDLACIK 377

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YVTD GQ  HF +L++CA K GILNP K R+DFVGFGVVLGED+KKFK
Sbjct: 378 YRIEEEKADWIIYVTDSGQSTHFDVLQKCAIKCGILNPEKVRIDFVGFGVVLGEDKKKFK 437

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +L+DEGL+RSL+KLK+K R   LTP EL +AQ++VAYGCIKYADLSHNRN
Sbjct: 438 TRSGETVRLVDLMDEGLKRSLEKLKEKKRDEVLTPEELKKAQESVAYGCIKYADLSHNRN 497

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            +YVFSF+KMLDDRGNTAVYLLYA TRI SIAR+AG+ S+
Sbjct: 498 HEYVFSFEKMLDDRGNTAVYLLYALTRIKSIARSAGVTSQ 537



 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 92/109 (84%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RSL+KLK+K R   LTP EL +AQ++VAYGCIKYADLSHNRN +YVFSF+KMLDDRG
Sbjct: 453  GLKRSLEKLKEKKRDEVLTPEELKKAQESVAYGCIKYADLSHNRNHEYVFSFEKMLDDRG 512

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKT 1037
            NTAVYLLYA TRI SIAR+AG+ S+ L  A+++T +SL+H+KE+ L K 
Sbjct: 513  NTAVYLLYALTRIKSIARSAGVTSQQLLEASKTTQISLDHDKEWNLGKV 561



 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 91/147 (61%), Gaps = 11/147 (7%)

Query: 6   RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           R   S+++ L  +F  A+Q AFPEL +    +A++N     KFGD+QCN AM + ++ K 
Sbjct: 55  RSFYSIQNTLVSIFKEAIQRAFPELKNAPVVIAASNNS---KFGDYQCNSAMPIVQLLKS 111

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           +G+K NP ++A+ I S V+           +I+K+E A  GF+NV LSR      ++ I+
Sbjct: 112 EGKKSNPREVAEKIKSCVSPH--------NLIEKLEVAGAGFINVTLSRTEGQNCLQFIL 163

Query: 126 VNGVQPPTLNKKLRVLVDFSSPNIARK 152
            NGV PP +N K RV+VDFSSPNIA++
Sbjct: 164 KNGVLPPKVNAKCRVIVDFSSPNIAKE 190


>gi|157117728|ref|XP_001658908.1| arginyl-tRNA synthetase [Aedes aegypti]
 gi|108884575|gb|EAT48800.1| AAEL000199-PA [Aedes aegypti]
          Length = 671

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/464 (54%), Positives = 312/464 (67%), Gaps = 37/464 (7%)

Query: 167 ILISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPEL 226
           ++++KAIA E   QG +S S S +         P    +S+ D+LS++FT A+  AFP++
Sbjct: 57  VILNKAIAAE---QGHASDSGSPS--------TPNGGAVSILDHLSNLFTQAIATAFPQV 105

Query: 227 GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATN 286
                +V + +     KFGD+QCN+AM + +  K    K NP D+A  +        A  
Sbjct: 106 CQDVPAVITVSSSA--KFGDYQCNNAMQIVQKLKALDVKTNPRDVANKLME------ALP 157

Query: 287 PSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIA 346
           PS A  I K+EVA  GFVNVFL + +    I  I+ +GV+PP   K+ RV+VDFSSPNIA
Sbjct: 158 PSPA--ISKVEVAGAGFVNVFLDKAFGASAIMSILKDGVKPPQFEKR-RVIVDFSSPNIA 214

Query: 347 KEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP 406
           KEMHVGHLRSTIIGD+ISR LE+LGHDV+RLNHVGDWGTQFGMLIAHLQD+FPDYL  SP
Sbjct: 215 KEMHVGHLRSTIIGDSISRFLEFLGHDVLRLNHVGDWGTQFGMLIAHLQDRFPDYLKVSP 274

Query: 407 PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 466
           PI+DLQ FYKESK RFD DE FKKRAY CVV LQ  D D  KAW++ICDVSR++FQK+YD
Sbjct: 275 PISDLQGFYKESKSRFDSDEDFKKRAYACVVKLQSGDDDSMKAWKLICDVSRKEFQKVYD 334

Query: 467 RLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFT 526
           RLNV L ERGESFYQK ME +V  L   G LE D+GRKIMWGE+R  IP+TI+KSDGGFT
Sbjct: 335 RLNVKLIERGESFYQKRMEAIVKELANAGFLEEDEGRKIMWGENRNGIPLTIIKSDGGFT 394

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRL 586
           YDTSD+AAI+QR+ EEK +W+VYVTD GQ  HF+     TI   + +R    L  +V R+
Sbjct: 395 YDTSDMAAIKQRLHEEKGEWLVYVTDAGQATHFQ-----TIF--SCARRANVLDPNVHRV 447

Query: 587 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           +HVG     FG+++     KF    T+S     L     E  KR
Sbjct: 448 DHVG-----FGVVLGEDGKKFK---TRSGDTVKLTELLDEGLKR 483



 Score =  431 bits (1108), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/337 (63%), Positives = 246/337 (72%), Gaps = 42/337 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+ISR LE+LGHDV+RLNHVGDWGTQFGMLIAHLQD+FPDYL  SPPI+DLQ FY
Sbjct: 224 STIIGDSISRFLEFLGHDVLRLNHVGDWGTQFGMLIAHLQDRFPDYLKVSPPISDLQGFY 283

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD DE FKKRAY CVV LQ  D D  KAW++ICDVSR++FQK+YDRLNV L ER
Sbjct: 284 KESKSRFDSDEDFKKRAYACVVKLQSGDDDSMKAWKLICDVSRKEFQKVYDRLNVKLIER 343

Query: 685 GESFYQKHMEQLVPYLEKKG-------------------NLSLTKKLG------------ 713
           GESFYQK ME +V  L   G                    L++ K  G            
Sbjct: 344 GESFYQKRMEAIVKELANAGFLEEDEGRKIMWGENRNGIPLTIIKSDGGFTYDTSDMAAI 403

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      +VYVTD GQ  HF+ +  CA++A +L+PN  R+D VGFGVVLGED KKF
Sbjct: 404 KQRLHEEKGEWLVYVTDAGQATHFQTIFSCARRANVLDPNVHRVDHVGFGVVLGEDGKKF 463

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTVKL+ELLDEGL+RSLDKL +K R   LTP EL +AQ++VAYGCIKYADLSHNR
Sbjct: 464 KTRSGDTVKLTELLDEGLKRSLDKLLEKERDKVLTPEELKQAQESVAYGCIKYADLSHNR 523

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           N +Y+FSFDKML+D+GNTAVYLLYAYTRI SIAR  G
Sbjct: 524 NNEYIFSFDKMLEDKGNTAVYLLYAYTRIRSIARNCG 560



 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 158/192 (82%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RSLDKL +K R   LTP EL +AQ++VAYGCIKYADLSHNRN +Y+FSFDKML+D+G
Sbjct: 480  GLKRSLDKLLEKERDKVLTPEELKQAQESVAYGCIKYADLSHNRNNEYIFSFDKMLEDKG 539

Query: 989  NTAVYLLYAYTRIASIARTAGIN-SEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLML 1047
            NTAVYLLYAYTRI SIAR  G + + ++     +T ++L+HEKE+ LAK LL+  DV+ L
Sbjct: 540  NTAVYLLYAYTRIRSIARNCGGDFANNIEKVIDTTELTLDHEKEWKLAKVLLKFTDVMKL 599

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
            ++++LCLHHLCE++Y++ST F+EFYD+CYCIEK+ +G+I  ++ GR+LL EAT++++ KC
Sbjct: 600  ISKNLCLHHLCEFVYEVSTTFTEFYDSCYCIEKNKQGEIVKINAGRVLLCEATSRILGKC 659

Query: 1108 FDILNIRTVHKM 1119
            FDIL ++ +HK+
Sbjct: 660  FDILGLKPLHKI 671



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 92/163 (56%), Gaps = 13/163 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           + P    +S+ D+LS++FT A+  AFP++     +V + +     KFGD+QCN+AM + +
Sbjct: 77  STPNGGAVSILDHLSNLFTQAIATAFPQVCQDVPAVITVSSSA--KFGDYQCNNAMQIVQ 134

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
             K    K NP D+A  +        A  PS A  I K+E A  GFVNVFL + +    +
Sbjct: 135 KLKALDVKTNPRDVANKLME------ALPPSPA--ISKVEVAGAGFVNVFLDKAFGASAI 186

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             I+ +GV+PP   K+ RV+VDFSSPNIA++      HL S I
Sbjct: 187 MSILKDGVKPPQFEKR-RVIVDFSSPNIAKE--MHVGHLRSTI 226


>gi|350420346|ref|XP_003492480.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Bombus
           impatiens]
          Length = 674

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/446 (53%), Positives = 310/446 (69%), Gaps = 29/446 (6%)

Query: 196 KMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL 255
           K+ +  ++ +S+ D LS++F  A+ VA+P++ D    + S+N     KFGD+QCN AM L
Sbjct: 80  KLKMTENNVISIYDTLSNLFKEAISVAYPDVCDPPVIITSSNNP---KFGDYQCNSAMPL 136

Query: 256 CKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGE 315
            K   +   +  P D+A++I S V          + +I K+EV   GF+N++L R +A  
Sbjct: 137 SKQLNNNEIRTKPQDVAKNIMSKVEE--------SSLISKLEVNGAGFINIYLKREFAQS 188

Query: 316 QIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
            +  ++ NG   P   KK +V+VDFSSPNIAKEMHVGHLRSTIIGD+I+RLLE+LGHDV+
Sbjct: 189 TLNTLVKNGEAFPPYTKKQKVIVDFSSPNIAKEMHVGHLRSTIIGDSIARLLEFLGHDVL 248

Query: 376 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQC 435
           R+NH+GDWGTQFGMLIAHLQDKFPDYL+ SPPI DLQ+FYKESK RFD DE FKKRAY C
Sbjct: 249 RINHIGDWGTQFGMLIAHLQDKFPDYLSISPPITDLQSFYKESKTRFDGDEEFKKRAYNC 308

Query: 436 VVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKG 495
           VV LQ FD D  KAW++ICDVSR++F+KIY RL++ L ERGESFYQKHME +V  LE KG
Sbjct: 309 VVKLQAFDSDMIKAWQLICDVSRKEFEKIYTRLDIKLIERGESFYQKHMEAIVKDLEAKG 368

Query: 496 LLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
           LLE D+GRK+MW ++   IP+TIVKSDGGFTYDTSD+AAI+QRIEEEKADW++YVTD GQ
Sbjct: 369 LLEEDEGRKVMWSKENNEIPLTIVKSDGGFTYDTSDMAAIKQRIEEEKADWVIYVTDAGQ 428

Query: 556 GVHFRLLEESTIIGDTI-SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKS 614
            +HF++L+        I SR      H   R++HVG     FG+++ + + KF    T+S
Sbjct: 429 SMHFQVLKNCAKRASIIESR------H---RIDHVG-----FGVVLGNDKKKFK---TRS 471

Query: 615 PPIADLQAFYKESKKRFDEDEIFKKR 640
                L     E  KR  E  I K+R
Sbjct: 472 GDTVKLSDLLDEGLKRALEKLIEKER 497



 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/341 (61%), Positives = 253/341 (74%), Gaps = 43/341 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I+RLLE+LGHDV+R+NH+GDWGTQFGMLIAHLQDKFPDYL+ SPPI DLQ+FY
Sbjct: 229 STIIGDSIARLLEFLGHDVLRINHIGDWGTQFGMLIAHLQDKFPDYLSISPPITDLQSFY 288

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD DE FKKRAY CVV LQ FD D  KAW++ICDVSR++F+KIY RL++ L ER
Sbjct: 289 KESKTRFDGDEEFKKRAYNCVVKLQAFDSDMIKAWQLICDVSRKEFEKIYTRLDIKLIER 348

Query: 685 GESFYQKHMEQLVPYLEKKG-------------------NLSLTKKLG------------ 713
           GESFYQKHME +V  LE KG                    L++ K  G            
Sbjct: 349 GESFYQKHMEAIVKDLEAKGLLEEDEGRKVMWSKENNEIPLTIVKSDGGFTYDTSDMAAI 408

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      ++YVTD GQ +HF++L+ CAK+A I+  ++ R+D VGFGVVLG D+KKF
Sbjct: 409 KQRIEEEKADWVIYVTDAGQSMHFQVLKNCAKRASII-ESRHRIDHVGFGVVLGNDKKKF 467

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTVKLS+LLDEGL+R+L+KL +K R   LT  EL  AQ+++AYGCIKYADLSHNR
Sbjct: 468 KTRSGDTVKLSDLLDEGLKRALEKLIEKERDKVLTEEELKIAQESIAYGCIKYADLSHNR 527

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           N +YVFSFDKML+D+GNTAVYLLYA TRI SIAR A I+ E
Sbjct: 528 NHEYVFSFDKMLEDKGNTAVYLLYALTRIRSIARAANISQE 568



 Score =  259 bits (663), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/191 (63%), Positives = 153/191 (80%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R+L+KL +K R   LT  EL  AQ+++AYGCIKYADLSHNRN +YVFSFDKML+D+G
Sbjct: 484  GLKRALEKLIEKERDKVLTEEELKIAQESIAYGCIKYADLSHNRNHEYVFSFDKMLEDKG 543

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYA TRI SIAR A I+ E LR  A+ TP+SLEHEKE+ LAK L++  DVL+ +
Sbjct: 544  NTAVYLLYALTRIRSIARAANISQEKLRKIAEDTPISLEHEKEWKLAKVLIKFPDVLIKI 603

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            T +L LHHLCEY Y+IS AFSEFYDNCYC+EK+  G+I  V+ GR+LL EATA +M+KCF
Sbjct: 604  TNNLYLHHLCEYCYEISCAFSEFYDNCYCVEKNELGEIVNVNIGRILLTEATAIIMEKCF 663

Query: 1109 DILNIRTVHKM 1119
             IL +++V +M
Sbjct: 664  SILGLKSVTRM 674



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +S+ D LS++F  A+ VA+P++ D    + S+N     KFGD+QCN AM L K   +   
Sbjct: 89  ISIYDTLSNLFKEAISVAYPDVCDPPVIITSSNNP---KFGDYQCNSAMPLSKQLNNNEI 145

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           +  P D+A++I S V          + +I K+E    GF+N++L R +A   +  ++ NG
Sbjct: 146 RTKPQDVAKNIMSKVEE--------SSLISKLEVNGAGFINIYLKREFAQSTLNTLVKNG 197

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
              P   KK +V+VDFSSPNIA++
Sbjct: 198 EAFPPYTKKQKVIVDFSSPNIAKE 221


>gi|340712657|ref|XP_003394872.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Bombus
           terrestris]
          Length = 674

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/504 (49%), Positives = 329/504 (65%), Gaps = 30/504 (5%)

Query: 138 LRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSSSQTKGTAKKM 197
           LR  ++F   NI     F+   +P   +  L  + I  + +   +  +  ++      K+
Sbjct: 23  LRKEIEFLRQNIT-TNNFMINSVPIDEYVKLEQENIKLKYRVAILKRTVKAERAKLGNKL 81

Query: 198 NVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 257
            +  ++ +S+ D LS++F  A+ VA+P++ D    + S+N     KFGD+QCN AM L K
Sbjct: 82  KMTENNVISIYDTLSNLFKEAISVAYPDVCDPPVIITSSNNP---KFGDYQCNSAMPLSK 138

Query: 258 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 317
              +   +  P D+A++I S V          + +I K+EV   GF+N++L R +A   +
Sbjct: 139 QLSNNEIRTKPQDVAKNIMSKVEE--------SSLISKLEVTGAGFINIYLKREFAQSTL 190

Query: 318 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
             ++ NG   P   K+ +V+VDFSSPNIAKEMHVGHLRSTIIGD+I+RLLE+LGHDV+R+
Sbjct: 191 NTLVKNGEAFPPNTKRQKVIVDFSSPNIAKEMHVGHLRSTIIGDSIARLLEFLGHDVLRI 250

Query: 378 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           NH+GDWGTQFGMLIAHLQDKFPD L+ SPPI DLQ+FYKESK RFD DE FKKRAY CVV
Sbjct: 251 NHIGDWGTQFGMLIAHLQDKFPDCLSISPPITDLQSFYKESKTRFDGDEEFKKRAYNCVV 310

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
            LQ  DPD  KAW++ICDVSR++F+KIY RL++ L ERGESFYQKHME +V  LE KGLL
Sbjct: 311 KLQASDPDMIKAWQLICDVSRKEFEKIYTRLDIKLIERGESFYQKHMEAIVKDLEAKGLL 370

Query: 498 ELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGV 557
           E D+GRK+MW +    IP+TIVKSDGGFTYDTSD+AAI+QRIEEEKADW++YVTD GQ +
Sbjct: 371 EEDEGRKVMWSKQNNEIPLTIVKSDGGFTYDTSDMAAIKQRIEEEKADWVIYVTDAGQSM 430

Query: 558 HFRLLEESTIIGDTI-SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 616
           HF++L+        I SR      H   R++HVG     FG+++ + + KF    T+S  
Sbjct: 431 HFQVLKNCAKRASIIESR------H---RIDHVG-----FGVVLGNDKKKFK---TRSGD 473

Query: 617 IADLQAFYKESKKRFDEDEIFKKR 640
              L     E  KR  E  I K+R
Sbjct: 474 TVKLSDLLDEGLKRAQEKLIEKER 497



 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/341 (61%), Positives = 251/341 (73%), Gaps = 43/341 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I+RLLE+LGHDV+R+NH+GDWGTQFGMLIAHLQDKFPD L+ SPPI DLQ+FY
Sbjct: 229 STIIGDSIARLLEFLGHDVLRINHIGDWGTQFGMLIAHLQDKFPDCLSISPPITDLQSFY 288

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD DE FKKRAY CVV LQ  DPD  KAW++ICDVSR++F+KIY RL++ L ER
Sbjct: 289 KESKTRFDGDEEFKKRAYNCVVKLQASDPDMIKAWQLICDVSRKEFEKIYTRLDIKLIER 348

Query: 685 GESFYQKHMEQLVPYLEKKG-------------------NLSLTKKLG------------ 713
           GESFYQKHME +V  LE KG                    L++ K  G            
Sbjct: 349 GESFYQKHMEAIVKDLEAKGLLEEDEGRKVMWSKQNNEIPLTIVKSDGGFTYDTSDMAAI 408

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      ++YVTD GQ +HF++L+ CAK+A I+  ++ R+D VGFGVVLG D+KKF
Sbjct: 409 KQRIEEEKADWVIYVTDAGQSMHFQVLKNCAKRASIIE-SRHRIDHVGFGVVLGNDKKKF 467

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTVKLS+LLDEGL+R+ +KL +K R   LT  EL  AQ+++AYGCIKYADLSHNR
Sbjct: 468 KTRSGDTVKLSDLLDEGLKRAQEKLIEKERDKVLTEEELKIAQESIAYGCIKYADLSHNR 527

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           N +YVFSFDKML+D+GNTAVYLLYA TRI SIAR A I+ E
Sbjct: 528 NHEYVFSFDKMLEDKGNTAVYLLYALTRIRSIARAANISQE 568



 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 151/191 (79%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R+ +KL +K R   LT  EL  AQ+++AYGCIKYADLSHNRN +YVFSFDKML+D+G
Sbjct: 484  GLKRAQEKLIEKERDKVLTEEELKIAQESIAYGCIKYADLSHNRNHEYVFSFDKMLEDKG 543

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYA TRI SIAR A I+ E LR  A+ TP+SLEHEKE+ LAK L++  DVL+ +
Sbjct: 544  NTAVYLLYALTRIRSIARAANISQEKLREIAEDTPISLEHEKEWKLAKVLIKFPDVLIKI 603

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            T +L LH LCEY Y+IS AFSEFYDNCYC+EK+  G+I  V+ GR+LL EATA +M+KCF
Sbjct: 604  TNNLYLHQLCEYCYEISCAFSEFYDNCYCVEKNELGEIVNVNIGRILLTEATAIIMEKCF 663

Query: 1109 DILNIRTVHKM 1119
             IL +++V +M
Sbjct: 664  SILGLKSVTRM 674



 Score =  100 bits (248), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 83/144 (57%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +S+ D LS++F  A+ VA+P++ D    + S+N     KFGD+QCN AM L K   +   
Sbjct: 89  ISIYDTLSNLFKEAISVAYPDVCDPPVIITSSNNP---KFGDYQCNSAMPLSKQLSNNEI 145

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           +  P D+A++I S V          + +I K+E    GF+N++L R +A   +  ++ NG
Sbjct: 146 RTKPQDVAKNIMSKVEE--------SSLISKLEVTGAGFINIYLKREFAQSTLNTLVKNG 197

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
              P   K+ +V+VDFSSPNIA++
Sbjct: 198 EAFPPNTKRQKVIVDFSSPNIAKE 221


>gi|383862219|ref|XP_003706581.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Megachile
           rotundata]
          Length = 675

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/436 (54%), Positives = 298/436 (68%), Gaps = 27/436 (6%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +S+ D L D+F +A+  A+P++ D    + S+N     KFGD+QCN AM L K     G 
Sbjct: 90  VSICDTLFDLFKNAITAAYPDVCDPPVIITSSNNP---KFGDYQCNSAMPLSKQLNSNGN 146

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K NP ++A +I S V          + +I K+EVA  GF+N++L + +A   + +++ +G
Sbjct: 147 KTNPRNVANNILSKVQE--------SPLISKLEVAGAGFINIYLKKEFAQTTLSNLVKSG 198

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
              P   KK RVLVDFSSPNIAKEMHVGHLRSTIIGD+I+ LLE+LGHDV+R+NHVGDWG
Sbjct: 199 KAFPPHVKKQRVLVDFSSPNIAKEMHVGHLRSTIIGDSIATLLEFLGHDVLRINHVGDWG 258

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHLQD+FPDYL  SPPI DLQ+FYKESK RFD DE FKKRAY CVV LQ FDP
Sbjct: 259 TQFGMLIAHLQDRFPDYLIVSPPITDLQSFYKESKIRFDTDEDFKKRAYSCVVKLQAFDP 318

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           D  KAWE+ICDVSR++FQK+Y+RL + L ERGESFYQK ME +V  LE  GLLE D+GRK
Sbjct: 319 DMIKAWELICDVSRKEFQKVYNRLGIRLIERGESFYQKRMESIVKELELNGLLEDDEGRK 378

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           +MWG+  G IP+TI+KSDGGFTYDTSD+AAI+QR+EEEKADW++YVTD GQ  HF++L+ 
Sbjct: 379 VMWGKHDGEIPLTIIKSDGGFTYDTSDMAAIKQRLEEEKADWVIYVTDAGQATHFKILKS 438

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
                  +            R++HVG     FG+++   + KF    T+S     L    
Sbjct: 439 CAERAGIVK--------SCHRIDHVG-----FGVVLGSDKKKFK---TRSGDTVKLTDLL 482

Query: 625 KESKKRFDEDEIFKKR 640
            E  KR  E  I K R
Sbjct: 483 DEGLKRALEKLIEKGR 498



 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/341 (60%), Positives = 248/341 (72%), Gaps = 43/341 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I+ LLE+LGHDV+R+NHVGDWGTQFGMLIAHLQD+FPDYL  SPPI DLQ+FY
Sbjct: 230 STIIGDSIATLLEFLGHDVLRINHVGDWGTQFGMLIAHLQDRFPDYLIVSPPITDLQSFY 289

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD DE FKKRAY CVV LQ FDPD  KAWE+ICDVSR++FQK+Y+RL + L ER
Sbjct: 290 KESKIRFDTDEDFKKRAYSCVVKLQAFDPDMIKAWELICDVSRKEFQKVYNRLGIRLIER 349

Query: 685 GESFYQKHMEQLVPYLEKKG-------------------NLSLTKKLG------------ 713
           GESFYQK ME +V  LE  G                    L++ K  G            
Sbjct: 350 GESFYQKRMESIVKELELNGLLEDDEGRKVMWGKHDGEIPLTIIKSDGGFTYDTSDMAAI 409

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      ++YVTD GQ  HF++L+ CA++AGI+     R+D VGFGVVLG D+KKF
Sbjct: 410 KQRLEEEKADWVIYVTDAGQATHFKILKSCAERAGIVKSCH-RIDHVGFGVVLGSDKKKF 468

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTVKL++LLDEGL+R+L+KL +K R   LT  EL  AQ+++AYGCIKYADLSHNR
Sbjct: 469 KTRSGDTVKLTDLLDEGLKRALEKLIEKGRDKVLTEEELKAAQESIAYGCIKYADLSHNR 528

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           N +Y+FSFDKML+D+GNTAVYLLYA TRI SIAR A I+ E
Sbjct: 529 NHEYIFSFDKMLEDKGNTAVYLLYALTRIRSIARAANISPE 569



 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 153/191 (80%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R+L+KL +K R   LT  EL  AQ+++AYGCIKYADLSHNRN +Y+FSFDKML+D+G
Sbjct: 485  GLKRALEKLIEKGRDKVLTEEELKAAQESIAYGCIKYADLSHNRNHEYIFSFDKMLEDKG 544

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYA TRI SIAR A I+ E LR  A+STP+SLEH+KE+ LAK LL+  DVL+ +
Sbjct: 545  NTAVYLLYALTRIRSIARAANISPEKLREMAESTPISLEHDKEWKLAKVLLKFPDVLIKI 604

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            T+DL +H LCE++Y+IS AF+EFYDNCYC+EK+  G+I  ++ GR+LL EATA +M+ CF
Sbjct: 605  TKDLYVHQLCEFVYEISCAFTEFYDNCYCVEKNELGEITKINVGRMLLTEATAIIMETCF 664

Query: 1109 DILNIRTVHKM 1119
             IL ++ V +M
Sbjct: 665  SILGLKPVARM 675



 Score =  102 bits (255), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 84/144 (58%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +S+ D L D+F +A+  A+P++ D    + S+N     KFGD+QCN AM L K     G 
Sbjct: 90  VSICDTLFDLFKNAITAAYPDVCDPPVIITSSNNP---KFGDYQCNSAMPLSKQLNSNGN 146

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K NP ++A +I S V          + +I K+E A  GF+N++L + +A   + +++ +G
Sbjct: 147 KTNPRNVANNILSKVQE--------SPLISKLEVAGAGFINIYLKKEFAQTTLSNLVKSG 198

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
              P   KK RVLVDFSSPNIA++
Sbjct: 199 KAFPPHVKKQRVLVDFSSPNIAKE 222


>gi|380013212|ref|XP_003690660.1| PREDICTED: LOW QUALITY PROTEIN: arginine--tRNA ligase,
           cytoplasmic-like [Apis florea]
          Length = 674

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/467 (51%), Positives = 315/467 (67%), Gaps = 41/467 (8%)

Query: 165 HDILISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFP 224
           H + I K   E E+     + S S+TK T        ++ +S+ D L ++F  A+  A+P
Sbjct: 61  HRVAILKRTIETER-----AKSESKTKTTE-------NNAVSIYDTLYNLFEKAISTAYP 108

Query: 225 ELGDKTASVA-STNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSEL 283
            + +    ++ STN K    FGD+QCN AM LCK   + G +  P D+A +I S +    
Sbjct: 109 NVCEPPVIISISTNPK----FGDYQCNSAMPLCKQLNNDGIQTKPRDVANNIMSKIEE-- 162

Query: 284 ATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSP 343
                 + ++ K+EVA  GF+N++L + +    +  ++ NG   P   KK +V++DFSSP
Sbjct: 163 ------SSLVSKLEVAGAGFINIYLKKEFTQIILTTLVKNGKVFPPYTKKQKVIIDFSSP 216

Query: 344 NIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT 403
           NIAKEMHVGHLRSTIIGD+I+RLLE+LGHDV+R+NH+GDWGTQFGMLIAHLQD+FPDYLT
Sbjct: 217 NIAKEMHVGHLRSTIIGDSIARLLEFLGHDVLRINHIGDWGTQFGMLIAHLQDRFPDYLT 276

Query: 404 KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 463
             PPI DLQ+FYKESK RFDEDE FKKRAY CVV LQ FDP+  KAW++ICDVSR++F+K
Sbjct: 277 ICPPIIDLQSFYKESKARFDEDEEFKKRAYNCVVKLQAFDPEMIKAWQLICDVSRKEFEK 336

Query: 464 IYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDG 523
           IY RL++ L ERGESFYQKHME +V  LE KGLLE D+GRKIMWG+    IP+TIVKSDG
Sbjct: 337 IYVRLDINLIERGESFYQKHMEIIVKDLEAKGLLENDEGRKIMWGKSNSEIPLTIVKSDG 396

Query: 524 GFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDV 583
           GFTYDTSD+AA++QRIEEEKA+WI+YVTD GQ  HF++L+     G+    +  Y  H  
Sbjct: 397 GFTYDTSDMAALKQRIEEEKANWIIYVTDAGQAKHFQILKSC---GERAGIIKSY--H-- 449

Query: 584 VRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            R++HVG     FG+++   + KF    T+S     L     E  KR
Sbjct: 450 -RMDHVG-----FGVVLGKDKKKFK---TRSGDTVKLSELLDEGLKR 487



 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/338 (63%), Positives = 252/338 (74%), Gaps = 43/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I+RLLE+LGHDV+R+NH+GDWGTQFGMLIAHLQD+FPDYLT  PPI DLQ+FY
Sbjct: 229 STIIGDSIARLLEFLGHDVLRINHIGDWGTQFGMLIAHLQDRFPDYLTICPPIIDLQSFY 288

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFDEDE FKKRAY CVV LQ FDP+  KAW++ICDVSR++F+KIY RL++ L ER
Sbjct: 289 KESKARFDEDEEFKKRAYNCVVKLQAFDPEMIKAWQLICDVSRKEFEKIYVRLDINLIER 348

Query: 685 GESFYQKHMEQLVPYLEKKG-------------------NLSLTKKLG------------ 713
           GESFYQKHME +V  LE KG                    L++ K  G            
Sbjct: 349 GESFYQKHMEIIVKDLEAKGLLENDEGRKIMWGKSNSEIPLTIVKSDGGFTYDTSDMAAL 408

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      I+YVTD GQ  HF++L+ C ++AGI+  +  RMD VGFGVVLG+D+KKF
Sbjct: 409 KQRIEEEKANWIIYVTDAGQAKHFQILKSCGERAGII-KSYHRMDHVGFGVVLGKDKKKF 467

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTVKLSELLDEGL+R+LDKLK+K R   LT  EL  AQ+++AYGCIKYADLSHNR
Sbjct: 468 KTRSGDTVKLSELLDEGLKRALDKLKEKERDKVLTEEELKIAQESIAYGCIKYADLSHNR 527

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           N +YVFSFDKML+D+GNTAVYLLYA TRI SIAR A I
Sbjct: 528 NHEYVFSFDKMLEDKGNTAVYLLYALTRIRSIARAANI 565



 Score =  254 bits (650), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 149/191 (78%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R+LDKLK+K R   LT  EL  AQ+++AYGCIKYADLSHNRN +YVFSFDKML+D+G
Sbjct: 484  GLKRALDKLKEKERDKVLTEEELKIAQESIAYGCIKYADLSHNRNHEYVFSFDKMLEDKG 543

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYA TRI SIAR A I    L+  AQ   +SLEHEKE+ LAK L++  DVL+ +
Sbjct: 544  NTAVYLLYALTRIRSIARAANITQNKLQELAQCNQISLEHEKEWKLAKVLIKFADVLIKI 603

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            T+DL LH LCEY Y+IS AFSEFYDNCYC+EK+  G+I  ++ GR+LL EATA +M+KCF
Sbjct: 604  TKDLYLHQLCEYCYEISCAFSEFYDNCYCVEKNELGEIVNINIGRMLLTEATAIIMEKCF 663

Query: 1109 DILNIRTVHKM 1119
             IL ++ V +M
Sbjct: 664  SILGLKPVARM 674



 Score = 92.8 bits (229), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 13/145 (8%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVA-STNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           +S+ D L ++F  A+  A+P + +    ++ STN K    FGD+QCN AM LCK   + G
Sbjct: 89  VSIYDTLYNLFEKAISTAYPNVCEPPVIISISTNPK----FGDYQCNSAMPLCKQLNNDG 144

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
            +  P D+A +I S +          + ++ K+E A  GF+N++L + +    +  ++ N
Sbjct: 145 IQTKPRDVANNIMSKIEE--------SSLVSKLEVAGAGFINIYLKKEFTQIILTTLVKN 196

Query: 128 GVQPPTLNKKLRVLVDFSSPNIARK 152
           G   P   KK +V++DFSSPNIA++
Sbjct: 197 GKVFPPYTKKQKVIIDFSSPNIAKE 221


>gi|91080725|ref|XP_975392.1| PREDICTED: similar to arginyl-tRNA synthetase [Tribolium castaneum]
 gi|270005463|gb|EFA01911.1| hypothetical protein TcasGA2_TC007521 [Tribolium castaneum]
          Length = 671

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/453 (53%), Positives = 312/453 (68%), Gaps = 36/453 (7%)

Query: 179 KQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNE 238
           K+ I+S S SQT   + +M        ++++ L ++F  A+  A P++ D    +  +N 
Sbjct: 67  KRAIASLSHSQTSRDSTRMQ-------NIQEILDEIFGAAISSACPDITDAPVVITLSNN 119

Query: 239 KYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEV 298
               KFGD+QCN AM +  I+K  G+K +P DIA  I          N S  +++DK+EV
Sbjct: 120 A---KFGDYQCNSAMQISNIYKQLGKKVSPRDIANKIVE--------NVSPHELVDKLEV 168

Query: 299 AKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           A PGF+NVF+S+ +    +  I  +GV+PP   KKLRV+VD SSPNIAKEMHVGHLRSTI
Sbjct: 169 AGPGFINVFVSKAFGLRNLSTIFTHGVRPPPY-KKLRVVVDLSSPNIAKEMHVGHLRSTI 227

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGDTI RLLE+LGHDV+R+NH+GDWGTQFGMLI HLQ+KFPDYL+K+PPI+DLQAFYKES
Sbjct: 228 IGDTICRLLEFLGHDVLRINHIGDWGTQFGMLIVHLQEKFPDYLSKAPPISDLQAFYKES 287

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES 478
           KKRFDEDE FKKRAY  VV LQ  DP+Y KAW++ICDVSR++FQ IYDRL+V L ERGES
Sbjct: 288 KKRFDEDEDFKKRAYAGVVKLQSGDPNYIKAWQLICDVSRKEFQVIYDRLDVKLIERGES 347

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-DRGSIPMTIVKSDGGFTYDTSDLAAIRQ 537
           FYQ  M  +V  LE  G LE D+GRK+MWG+ + G+IP T+VKSDGG+TYDTSDLA I+Q
Sbjct: 348 FYQSRMNDIVKELEAGGYLEDDEGRKVMWGDKNDGNIPFTVVKSDGGYTYDTSDLATIKQ 407

Query: 538 RIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
           RI EEK DW++YVTD GQG HF +L +       I+R +  L  D +R++HV      FG
Sbjct: 408 RIVEEKGDWLIYVTDAGQGTHFYILFQ-------IARKIGLLT-DNIRVDHV-----PFG 454

Query: 598 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           +++   + KF    T+S     L    +E  KR
Sbjct: 455 VVLGEDKKKFK---TRSGDTVRLIDLLEEGLKR 484



 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/340 (61%), Positives = 250/340 (73%), Gaps = 44/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDTI RLLE+LGHDV+R+NH+GDWGTQFGMLI HLQ+KFPDYL+K+PPI+DLQAFY
Sbjct: 225 STIIGDTICRLLEFLGHDVLRINHIGDWGTQFGMLIVHLQEKFPDYLSKAPPISDLQAFY 284

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY  VV LQ  DP+Y KAW++ICDVSR++FQ IYDRL+V L ER
Sbjct: 285 KESKKRFDEDEDFKKRAYAGVVKLQSGDPNYIKAWQLICDVSRKEFQVIYDRLDVKLIER 344

Query: 685 GESFYQKHMEQLVPYLEKKGNL--------------------SLTKKLG----------- 713
           GESFYQ  M  +V  LE  G L                    ++ K  G           
Sbjct: 345 GESFYQSRMNDIVKELEAGGYLEDDEGRKVMWGDKNDGNIPFTVVKSDGGYTYDTSDLAT 404

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                       ++YVTD GQG HF +L + A+K G+L  N  R+D V FGVVLGED+KK
Sbjct: 405 IKQRIVEEKGDWLIYVTDAGQGTHFYILFQIARKIGLLTDN-IRVDHVPFGVVLGEDKKK 463

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSGDTV+L +LL+EGL+R+LDKLK+K R   LTP EL +AQ+++AYGCIKYADLSHN
Sbjct: 464 FKTRSGDTVRLIDLLEEGLKRALDKLKEKGRDQVLTPEELKQAQESIAYGCIKYADLSHN 523

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           R+ +YVFSFDKML+D+GNTAVYLLYAYTRI SIARTA  +
Sbjct: 524 RHHEYVFSFDKMLEDKGNTAVYLLYAYTRIRSIARTANFD 563



 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/191 (63%), Positives = 155/191 (81%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R+LDKLK+K R   LTP EL +AQ+++AYGCIKYADLSHNR+ +YVFSFDKML+D+G
Sbjct: 481  GLKRALDKLKEKGRDQVLTPEELKQAQESIAYGCIKYADLSHNRHHEYVFSFDKMLEDKG 540

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYAYTRI SIARTA  + + +   A+S  +SL+HEKE+ LAK LL+  + L  V
Sbjct: 541  NTAVYLLYAYTRIRSIARTANFDDKKIEDVAKSHTISLDHEKEWKLAKVLLKFPEELDKV 600

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            T+DLC HHLCEY+Y+I+T F+EFYD+CYC+EKD+ G I  V+ GR+LLAEATA+VM KC 
Sbjct: 601  TKDLCPHHLCEYVYEIATTFTEFYDSCYCVEKDSSGDIVKVNHGRILLAEATARVMAKCL 660

Query: 1109 DILNIRTVHKM 1119
            DIL ++ V KM
Sbjct: 661  DILGLKPVAKM 671



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 86/143 (60%), Gaps = 12/143 (8%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           ++++ L ++F  A+  A P++ D    +  +N     KFGD+QCN AM +  I+K  G+K
Sbjct: 87  NIQEILDEIFGAAISSACPDITDAPVVITLSNNA---KFGDYQCNSAMQISNIYKQLGKK 143

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
            +P DIA  I          N S  +++DK+E A PGF+NVF+S+ +    +  I  +GV
Sbjct: 144 VSPRDIANKIVE--------NVSPHELVDKLEVAGPGFINVFVSKAFGLRNLSTIFTHGV 195

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
           +PP   KKLRV+VD SSPNIA++
Sbjct: 196 RPPPY-KKLRVVVDLSSPNIAKE 217


>gi|66501636|ref|XP_623301.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic [Apis mellifera]
          Length = 674

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/467 (51%), Positives = 313/467 (67%), Gaps = 41/467 (8%)

Query: 165 HDILISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFP 224
           H + I K   E E+     + S S+TK T        ++ +S+ D L ++F  A+ +A+P
Sbjct: 61  HRVAILKRTIETER-----AKSESKTKATE-------NNAVSIYDTLYNLFEKAISIAYP 108

Query: 225 ELGDKTASVA-STNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSEL 283
            + +    ++ STN K    FGD+QCN AM LCK   + G +  P D+A +I S +    
Sbjct: 109 NVCEPPVIISISTNPK----FGDYQCNSAMPLCKQLNNDGIQTKPRDVANNIMSKIEE-- 162

Query: 284 ATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSP 343
                 + ++ K+EVA  GF+N++L + +    +  ++ NG   P   KK RV+VDFSSP
Sbjct: 163 ------SSLVSKLEVAGAGFINIYLKKEFIQIILSTLVKNGKVFPPYTKKQRVIVDFSSP 216

Query: 344 NIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT 403
           NIAKEMHVGHLRSTIIGD+I+RLLE+LGHDV+R+NHVGDWGTQFGMLIAHLQ++FPDYLT
Sbjct: 217 NIAKEMHVGHLRSTIIGDSIARLLEFLGHDVLRINHVGDWGTQFGMLIAHLQNRFPDYLT 276

Query: 404 KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 463
            SPPI DLQ+FYKESK RFD+DE FKK AY CVV LQ FDP+  KAW++ICDVSR++F+K
Sbjct: 277 ISPPIIDLQSFYKESKARFDKDEEFKKHAYNCVVKLQTFDPEITKAWQLICDVSRKEFEK 336

Query: 464 IYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDG 523
           IY RL++ L ERGESFYQKHME +V  LE KGLLE D+GRKIMWG+    IP+TIVKSDG
Sbjct: 337 IYVRLDINLIERGESFYQKHMEVIVKDLETKGLLEDDEGRKIMWGKRNNEIPLTIVKSDG 396

Query: 524 GFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDV 583
           GFTYDTSD+AA++QRIEEE+ADWI+YVTD GQ  HF++L+        I        H  
Sbjct: 397 GFTYDTSDMAALKQRIEEERADWIIYVTDAGQAKHFQILKSCAERAGIIKSY-----H-- 449

Query: 584 VRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            R++HVG     FG+++   + KF    T+S     L     E  KR
Sbjct: 450 -RIDHVG-----FGVVLGKDKKKFK---TRSGDTVKLSDLLDEGLKR 487



 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/338 (62%), Positives = 253/338 (74%), Gaps = 43/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I+RLLE+LGHDV+R+NHVGDWGTQFGMLIAHLQ++FPDYLT SPPI DLQ+FY
Sbjct: 229 STIIGDSIARLLEFLGHDVLRINHVGDWGTQFGMLIAHLQNRFPDYLTISPPIIDLQSFY 288

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD+DE FKK AY CVV LQ FDP+  KAW++ICDVSR++F+KIY RL++ L ER
Sbjct: 289 KESKARFDKDEEFKKHAYNCVVKLQTFDPEITKAWQLICDVSRKEFEKIYVRLDINLIER 348

Query: 685 GESFYQKHMEQLVPYLEKKG-------------------NLSLTKKLG------------ 713
           GESFYQKHME +V  LE KG                    L++ K  G            
Sbjct: 349 GESFYQKHMEVIVKDLETKGLLEDDEGRKIMWGKRNNEIPLTIVKSDGGFTYDTSDMAAL 408

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      I+YVTD GQ  HF++L+ CA++AGI+  +  R+D VGFGVVLG+D+KKF
Sbjct: 409 KQRIEEERADWIIYVTDAGQAKHFQILKSCAERAGII-KSYHRIDHVGFGVVLGKDKKKF 467

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTVKLS+LLDEGL+R+LDKLK+K R   LT  EL  AQ+++AYGCIKYADLSHNR
Sbjct: 468 KTRSGDTVKLSDLLDEGLKRALDKLKEKERDKVLTEEELKIAQESIAYGCIKYADLSHNR 527

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           N +YVFSFDKML+D+GNTAVYLLYA TRI SIAR A I
Sbjct: 528 NHEYVFSFDKMLEDKGNTAVYLLYALTRIRSIARAANI 565



 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 149/191 (78%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R+LDKLK+K R   LT  EL  AQ+++AYGCIKYADLSHNRN +YVFSFDKML+D+G
Sbjct: 484  GLKRALDKLKEKERDKVLTEEELKIAQESIAYGCIKYADLSHNRNHEYVFSFDKMLEDKG 543

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYA TRI SIAR A I    L+  AQS  +SLEHEKE+ LAK L++  DVL+ +
Sbjct: 544  NTAVYLLYALTRIRSIARAANITQNKLQELAQSNQISLEHEKEWKLAKVLIKFADVLIKI 603

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            T+DL LH LCEY Y+IS  FSEFYDNCYC+EK+  G+I  ++ GR+LL EATA +M+KCF
Sbjct: 604  TKDLYLHQLCEYCYEISCTFSEFYDNCYCVEKNELGEIVNINIGRMLLTEATAIIMEKCF 663

Query: 1109 DILNIRTVHKM 1119
             IL ++ V +M
Sbjct: 664  SILGLKPVARM 674



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 13/145 (8%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVA-STNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           +S+ D L ++F  A+ +A+P + +    ++ STN K    FGD+QCN AM LCK   + G
Sbjct: 89  VSIYDTLYNLFEKAISIAYPNVCEPPVIISISTNPK----FGDYQCNSAMPLCKQLNNDG 144

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
            +  P D+A +I S +          + ++ K+E A  GF+N++L + +    +  ++ N
Sbjct: 145 IQTKPRDVANNIMSKIEE--------SSLVSKLEVAGAGFINIYLKKEFIQIILSTLVKN 196

Query: 128 GVQPPTLNKKLRVLVDFSSPNIARK 152
           G   P   KK RV+VDFSSPNIA++
Sbjct: 197 GKVFPPYTKKQRVIVDFSSPNIAKE 221


>gi|170028825|ref|XP_001842295.1| arginyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167877980|gb|EDS41363.1| arginyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 664

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/429 (55%), Positives = 294/429 (68%), Gaps = 26/429 (6%)

Query: 202 SDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           S   S+ D+L+D+FT A+  AFP++     +V + +   V KFGD+QCN+AM + +  K 
Sbjct: 74  SANSSILDHLNDIFTQAIATAFPQVCADVPTVITVSG--VPKFGDYQCNNAMQIVQKLKA 131

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
              K NP D+A  I   V          + +I K+EVA  GFVNVFL + +  E I  I+
Sbjct: 132 LDVKTNPRDVAVKIMEAVPQ--------SPMISKVEVAGAGFVNVFLDKTFGAEAIMSIL 183

Query: 322 VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
            +GV+PP   +K RV+VDFSSPNIAKEMHVGHLRSTIIGD+I R LE+LGHDV+RLNHVG
Sbjct: 184 KDGVKPPVFARK-RVIVDFSSPNIAKEMHVGHLRSTIIGDSICRFLEFLGHDVLRLNHVG 242

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIAHLQD+FPDYL  SPPI DLQAFYKESK RFD DE FKKRAY CVV LQ 
Sbjct: 243 DWGTQFGMLIAHLQDRFPDYLKVSPPIGDLQAFYKESKTRFDSDEEFKKRAYACVVKLQG 302

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            D D  K W++ICDVSR++FQK+YDRL+V L ERGESFYQK ME +V  L K+  LE DD
Sbjct: 303 GDADSLKGWKLICDVSRKEFQKVYDRLDVKLIERGESFYQKRMESIVKDLAKQQFLEEDD 362

Query: 502 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           GRKIMWGE++  IP+TI+KSDGGFTYDTSD+AAI+QR+ EEK +W+VYVTD GQ  HF  
Sbjct: 363 GRKIMWGENKDGIPLTIIKSDGGFTYDTSDMAAIKQRLHEEKGEWLVYVTDAGQATHF-- 420

Query: 562 LEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 621
               TI   + +R  + L   V R++HVG     FG+++     KF    T+S     L 
Sbjct: 421 ---YTIF--SCARRAKILDPAVHRVDHVG-----FGVVLGEDGKKFK---TRSGDTVKLT 467

Query: 622 AFYKESKKR 630
               E  KR
Sbjct: 468 ELLDEGLKR 476



 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/337 (63%), Positives = 241/337 (71%), Gaps = 42/337 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I R LE+LGHDV+RLNHVGDWGTQFGMLIAHLQD+FPDYL  SPPI DLQAFY
Sbjct: 217 STIIGDSICRFLEFLGHDVLRLNHVGDWGTQFGMLIAHLQDRFPDYLKVSPPIGDLQAFY 276

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD DE FKKRAY CVV LQ  D D  K W++ICDVSR++FQK+YDRL+V L ER
Sbjct: 277 KESKTRFDSDEEFKKRAYACVVKLQGGDADSLKGWKLICDVSRKEFQKVYDRLDVKLIER 336

Query: 685 GESFYQKHMEQLVPYL-----------------EKKGNLSLT------------------ 709
           GESFYQK ME +V  L                 E K  + LT                  
Sbjct: 337 GESFYQKRMESIVKDLAKQQFLEEDDGRKIMWGENKDGIPLTIIKSDGGFTYDTSDMAAI 396

Query: 710 -------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                  K   +VYVTD GQ  HF  +  CA++A IL+P   R+D VGFGVVLGED KKF
Sbjct: 397 KQRLHEEKGEWLVYVTDAGQATHFYTIFSCARRAKILDPAVHRVDHVGFGVVLGEDGKKF 456

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTVKL+ELLDEGL+RSLDKL +K R   LTP EL  AQ++VAYGCIKYADLSHNR
Sbjct: 457 KTRSGDTVKLTELLDEGLKRSLDKLLEKERDKVLTPEELKAAQESVAYGCIKYADLSHNR 516

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           N +Y+FSFDKML+D+GNTAVYLLYAYTRI SIAR  G
Sbjct: 517 NNEYIFSFDKMLEDKGNTAVYLLYAYTRIRSIARNCG 553



 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 157/192 (81%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RSLDKL +K R   LTP EL  AQ++VAYGCIKYADLSHNRN +Y+FSFDKML+D+G
Sbjct: 473  GLKRSLDKLLEKERDKVLTPEELKAAQESVAYGCIKYADLSHNRNNEYIFSFDKMLEDKG 532

Query: 989  NTAVYLLYAYTRIASIARTAGIN-SEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLML 1047
            NTAVYLLYAYTRI SIAR  G + + D+     ST +SL+HEKE+ LAK LL+  DV+ L
Sbjct: 533  NTAVYLLYAYTRIRSIARNCGGDFANDIDKVIASTQLSLDHEKEWKLAKVLLKFTDVMKL 592

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
            ++++LCLHHLCE++YD+ST F+EFYD+CYCIEK+ +G+I  ++ GR+LL EAT++V+ KC
Sbjct: 593  ISKNLCLHHLCEFVYDVSTTFTEFYDSCYCIEKNKQGEIVKINAGRVLLCEATSRVLGKC 652

Query: 1108 FDILNIRTVHKM 1119
            FDIL ++ +HK+
Sbjct: 653  FDILGLKPLHKI 664



 Score =  109 bits (272), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 90/155 (58%), Gaps = 13/155 (8%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+ D+L+D+FT A+  AFP++     +V + +   V KFGD+QCN+AM + +  K    K
Sbjct: 78  SILDHLNDIFTQAIATAFPQVCADVPTVITVSG--VPKFGDYQCNNAMQIVQKLKALDVK 135

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
            NP D+A  I   V          + +I K+E A  GFVNVFL + +  E +  I+ +GV
Sbjct: 136 TNPRDVAVKIMEAVPQ--------SPMISKVEVAGAGFVNVFLDKTFGAEAIMSILKDGV 187

Query: 130 QPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           +PP   +K RV+VDFSSPNIA++      HL S I
Sbjct: 188 KPPVFARK-RVIVDFSSPNIAKE--MHVGHLRSTI 219


>gi|194745067|ref|XP_001955014.1| GF16459 [Drosophila ananassae]
 gi|190628051|gb|EDV43575.1| GF16459 [Drosophila ananassae]
          Length = 666

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/467 (51%), Positives = 313/467 (67%), Gaps = 48/467 (10%)

Query: 168 LISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELG 227
           ++ ++IAEE K  G                ++ V +  S+ ++L  VF  A+ +AFPE  
Sbjct: 57  ILRQSIAEESKAGG----------------SIEVQENSSITEHLHFVFAQAIALAFPEYK 100

Query: 228 DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNP 287
           D   S+A  N     KFGD+QCN+AM L K  K+KG  K+P DIA        +E+  N 
Sbjct: 101 DTPVSIAPVNSASA-KFGDYQCNNAMKLAKQLKEKGINKSPGDIA--------TEIQRNC 151

Query: 288 SLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAK 347
            ++ +I+K+EVA  GFVNVFLS+ YA + +  ++ NGV+PP + K+ RVL+DFSSPNIAK
Sbjct: 152 PVSPLIEKLEVAGAGFVNVFLSKNYASQALSGLLRNGVKPPPVPKR-RVLIDFSSPNIAK 210

Query: 348 EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 407
           +MHVGHLRSTIIG++I RLLE+L HDVVR+NH+GDWGTQFGMLIAHL+D+FP++L +SPP
Sbjct: 211 QMHVGHLRSTIIGESICRLLEFLQHDVVRINHLGDWGTQFGMLIAHLEDRFPNFLNESPP 270

Query: 408 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 467
           I DLQ FYKESKKRFDEDE FKKRAY  VV+LQ  +P+  KAW++ICDVSR++FQ IY+R
Sbjct: 271 IGDLQVFYKESKKRFDEDEEFKKRAYSRVVSLQSGEPNSIKAWQLICDVSRKEFQTIYNR 330

Query: 468 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-GEDRGSIPMTIVKSDGGFT 526
           L+V++ ERGESFYQ  M  +V +L KK LLE D+GR+IMW  E +  IP+TIVKSDGGFT
Sbjct: 331 LDVSIQERGESFYQSRMLSVVEFLRKKNLLEPDEGREIMWPDESKTGIPLTIVKSDGGFT 390

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLG---HDV 583
           YDTSD+AAIR R+EEEK  WI+YV D GQ  HF          +TI +  E  G     V
Sbjct: 391 YDTSDMAAIRHRLEEEKCSWIIYVVDAGQSTHF----------NTIFKAAERCGILDRAV 440

Query: 584 VRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            R++HV     QFG+++     KF    T+S     L     E  KR
Sbjct: 441 HRVDHV-----QFGVVLGEDGKKFK---TRSGDTVKLSDLLDEGMKR 479



 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/338 (57%), Positives = 241/338 (71%), Gaps = 43/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I RLLE+L HDVVR+NH+GDWGTQFGMLIAHL+D+FP++L +SPPI DLQ FY
Sbjct: 219 STIIGESICRLLEFLQHDVVRINHLGDWGTQFGMLIAHLEDRFPNFLNESPPIGDLQVFY 278

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY  VV+LQ  +P+  KAW++ICDVSR++FQ IY+RL+V++ ER
Sbjct: 279 KESKKRFDEDEEFKKRAYSRVVSLQSGEPNSIKAWQLICDVSRKEFQTIYNRLDVSIQER 338

Query: 685 GESFYQKHMEQLVPYLEKKG--------------------NLSLTKKLG----------- 713
           GESFYQ  M  +V +L KK                      L++ K  G           
Sbjct: 339 GESFYQSRMLSVVEFLRKKNLLEPDEGREIMWPDESKTGIPLTIVKSDGGFTYDTSDMAA 398

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                       I+YV D GQ  HF  + + A++ GIL+    R+D V FGVVLGED KK
Sbjct: 399 IRHRLEEEKCSWIIYVVDAGQSTHFNTIFKAAERCGILDRAVHRVDHVQFGVVLGEDGKK 458

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSGDTVKLS+LLDEG++RSL++L+ + R+  LTP EL +AQ+AVAY CIKYADL HN
Sbjct: 459 FKTRSGDTVKLSDLLDEGMKRSLNQLESRGRNDVLTPQELKDAQEAVAYSCIKYADLCHN 518

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           R  DY+FSFDKML+DRGNTAVYLLY YTRI SIAR +G
Sbjct: 519 RISDYIFSFDKMLEDRGNTAVYLLYTYTRICSIARNSG 556



 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 144/191 (75%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++RSL++L+ + R+  LTP EL +AQ+AVAY CIKYADL HNR  DY+FSFDKML+DRG
Sbjct: 476  GMKRSLNQLESRGRNDVLTPQELKDAQEAVAYSCIKYADLCHNRISDYIFSFDKMLEDRG 535

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLY YTRI SIAR +G +  DL    +   + L HEKE+ LAKTLL+M+D+L+  
Sbjct: 536  NTAVYLLYTYTRICSIARNSGEDFSDLAKVLEGVNIDLSHEKEWKLAKTLLKMHDILIKC 595

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            + +L LH LCE+ Y++ T F+EFYD+CYCIEK+  G+I  V+  R+LL EATA V+++ F
Sbjct: 596  SNELFLHFLCEFCYEVCTVFTEFYDSCYCIEKNKAGEIIAVNRSRILLCEATAAVLRQSF 655

Query: 1109 DILNIRTVHKM 1119
             IL ++ V K+
Sbjct: 656  FILGLKPVAKI 666



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 98/151 (64%), Gaps = 10/151 (6%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           ++ V++  S+ ++L  VF  A+ +AFPE  D   S+A  N     KFGD+QCN+AM L K
Sbjct: 71  SIEVQENSSITEHLHFVFAQAIALAFPEYKDTPVSIAPVNSASA-KFGDYQCNNAMKLAK 129

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
             K+KG  K+P DIA        +E+  N  ++ +I+K+E A  GFVNVFLS+ YA + +
Sbjct: 130 QLKEKGINKSPGDIA--------TEIQRNCPVSPLIEKLEVAGAGFVNVFLSKNYASQAL 181

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++ NGV+PP + K+ RVL+DFSSPNIA++
Sbjct: 182 SGLLRNGVKPPPVPKR-RVLIDFSSPNIAKQ 211


>gi|195479011|ref|XP_002100732.1| GE16015 [Drosophila yakuba]
 gi|194188256|gb|EDX01840.1| GE16015 [Drosophila yakuba]
          Length = 664

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/454 (52%), Positives = 310/454 (68%), Gaps = 38/454 (8%)

Query: 168 LISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELG 227
           ++ K+IAEE    G          G AK     + D  S+ ++L  VF  A+  AFPE  
Sbjct: 54  ILKKSIAEESNAGG----------GAAK-----LKDSSSITEHLESVFGQAIASAFPEFR 98

Query: 228 DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNP 287
           D    +A  N     KFGD+QCN+AM L K  K+KG  K P DIA        +EL  + 
Sbjct: 99  DTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLKEKGISKAPRDIA--------TELKGHC 149

Query: 288 SLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAK 347
             + +I+K+E+A  GFVNVFLS+ YA   + +++ NGV PP +NK+ RVLVDFSSPNIAK
Sbjct: 150 PPSPLIEKLEIAGAGFVNVFLSKDYAASALSNLLRNGVSPPEVNKR-RVLVDFSSPNIAK 208

Query: 348 EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 407
           +MHVGHLRSTIIG+++ RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP+YL +SPP
Sbjct: 209 QMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLNESPP 268

Query: 408 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 467
           I+DLQ FYKESKKRFDEDE FKKRAY  VV+LQ+  P+  KAWE+IC+VSR++FQ IY+R
Sbjct: 269 ISDLQLFYKESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYER 328

Query: 468 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED-RGSIPMTIVKSDGGFT 526
           L++++ ERGESFYQ  M  +V YL  KGLLE D+GR+IMW +D +  IP+TIVKSDGGFT
Sbjct: 329 LDISIKERGESFYQSRMLSVVEYLRGKGLLEADEGREIMWPDDTKTGIPLTIVKSDGGFT 388

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRL 586
           YDTSD+AAIR R+EEE  DWI+YV D GQ  HF  + ++       S +L  L H   R+
Sbjct: 389 YDTSDMAAIRHRVEEELCDWIIYVVDSGQSTHFNTIFKAA----ERSAILNPLTH---RV 441

Query: 587 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +HV     QFG+++     KF      +  +ADL
Sbjct: 442 DHV-----QFGVVLGEDGKKFKTRSGDTVKLADL 470



 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/346 (56%), Positives = 245/346 (70%), Gaps = 43/346 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP+YL +SPPI+DLQ FY
Sbjct: 217 STIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLNESPPISDLQLFY 276

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY  VV+LQ+  P+  KAWE+IC+VSR++FQ IY+RL++++ ER
Sbjct: 277 KESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYERLDISIKER 336

Query: 685 GESFYQKHMEQLVPYLEKKG--------------------NLSLTKKLG----------- 713
           GESFYQ  M  +V YL  KG                     L++ K  G           
Sbjct: 337 GESFYQSRMLSVVEYLRGKGLLEADEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAA 396

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                       I+YV D GQ  HF  + + A+++ ILNP   R+D V FGVVLGED KK
Sbjct: 397 IRHRVEEELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLTHRVDHVQFGVVLGEDGKK 456

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSGDTVKL++LLDEG++RSL +L+ + R   LTP EL +AQ+++AYGCIKY+DL HN
Sbjct: 457 FKTRSGDTVKLADLLDEGMKRSLLQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHN 516

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           R  DY+FSFDKML+DRGNTAVYLLY YTRI SIAR  G +  + PE
Sbjct: 517 RISDYIFSFDKMLEDRGNTAVYLLYTYTRICSIARNCGEDFSNLPE 562



 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 145/191 (75%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++RSL +L+ + R   LTP EL +AQ+++AYGCIKY+DL HNR  DY+FSFDKML+DRG
Sbjct: 474  GMKRSLLQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRG 533

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLY YTRI SIAR  G +  +L    + T + L HEKE+ LAKTLL+++D+L+  
Sbjct: 534  NTAVYLLYTYTRICSIARNCGEDFSNLPEILKKTNIVLAHEKEWKLAKTLLKLHDILIKC 593

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            +R+L LH LCE+ +++ T F+EFYD+CYCIEK+ +G I  V+  R+LL EATA V+++CF
Sbjct: 594  SRELFLHFLCEFCFEVCTVFTEFYDSCYCIEKNKQGDIIAVNHSRILLCEATAAVLRQCF 653

Query: 1109 DILNIRTVHKM 1119
             IL ++ V KM
Sbjct: 654  YILGLKPVSKM 664



 Score =  124 bits (312), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 92/148 (62%), Gaps = 10/148 (6%)

Query: 5   VRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFK 64
           ++D  S+ ++L  VF  A+  AFPE  D    +A  N     KFGD+QCN+AM L K  K
Sbjct: 72  LKDSSSITEHLESVFGQAIASAFPEFRDTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLK 130

Query: 65  DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI 124
           +KG  K P DIA        +EL  +   + +I+K+E A  GFVNVFLS+ YA   + ++
Sbjct: 131 EKGISKAPRDIA--------TELKGHCPPSPLIEKLEIAGAGFVNVFLSKDYAASALSNL 182

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           + NGV PP +NK+ RVLVDFSSPNIA++
Sbjct: 183 LRNGVSPPEVNKR-RVLVDFSSPNIAKQ 209


>gi|195175085|ref|XP_002028293.1| GL14083 [Drosophila persimilis]
 gi|194117430|gb|EDW39473.1| GL14083 [Drosophila persimilis]
          Length = 664

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/447 (52%), Positives = 304/447 (68%), Gaps = 34/447 (7%)

Query: 189 QTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQ 248
           Q+     K  + V++  S+ ++L +VF  A+ +AFPE G+    +A  N     K+GD+Q
Sbjct: 60  QSIAYEAKSAMEVTESFSITEHLENVFARAISLAFPEYGNIPVIIAPVNSASA-KYGDYQ 118

Query: 249 CNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL 308
           CN+AM L K  K+ G  + P DIA        +EL     L+ +I+K+EV   GFVNV+L
Sbjct: 119 CNNAMGLAKKMKEMGVNRTPRDIA--------NELQKCCPLSPIINKLEVGGAGFVNVYL 170

Query: 309 SRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLE 368
           S+ YA + +K+I+ NG++PP + K+ RVLVDFSSPNIAK+MHVGHLRSTIIG+++ RLLE
Sbjct: 171 SKDYAAQSLKNILRNGIKPPRVLKR-RVLVDFSSPNIAKQMHVGHLRSTIIGESVCRLLE 229

Query: 369 YLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIF 428
           +L HDV+R+NH+GDWGTQFGMLIAHL+D+FPD+L KSPPI DLQ+FYKESKKRFD +E F
Sbjct: 230 FLQHDVIRINHLGDWGTQFGMLIAHLEDRFPDFLNKSPPIGDLQSFYKESKKRFDTEEEF 289

Query: 429 KKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLV 488
           KKRAY  VV+LQ  +P+ +KAW++ICDVSR++FQ IYDRL+VTL ERGESFYQ  M  +V
Sbjct: 290 KKRAYNRVVSLQSGEPNSRKAWQLICDVSRQEFQAIYDRLDVTLRERGESFYQSRMLSVV 349

Query: 489 PYLEKKGLLELDDGRKIMW-GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
            +L  K +LE D+GR+IMW  EDR  IP+TIVKSDGGFTYDTSD+AAIR RIEEE   WI
Sbjct: 350 DFLRNKNMLEHDEGRQIMWPNEDRSGIPLTIVKSDGGFTYDTSDMAAIRHRIEEEHCTWI 409

Query: 548 VYVTDLGQGVHFRLL----EESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL 603
           +YV D GQ  HF  +    E   I+  T         H   R++HV     QFG+++   
Sbjct: 410 IYVVDSGQSTHFNTIFKAAERCCILNPT--------AH---RVHHV-----QFGVVLGED 453

Query: 604 QDKFPDYLTKSPPIADLQAFYKESKKR 630
             KF    T+S     L     E  KR
Sbjct: 454 GKKFK---TRSGDTVKLSDLLNEGMKR 477



 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/338 (58%), Positives = 238/338 (70%), Gaps = 43/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FPD+L KSPPI DLQ+FY
Sbjct: 217 STIIGESVCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPDFLNKSPPIGDLQSFY 276

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAY  VV+LQ  +P+ +KAW++ICDVSR++FQ IYDRL+VTL ER
Sbjct: 277 KESKKRFDTEEEFKKRAYNRVVSLQSGEPNSRKAWQLICDVSRQEFQAIYDRLDVTLRER 336

Query: 685 GESFYQKHMEQLVPYLEKKGN--------------------LSLTKKLG----------- 713
           GESFYQ  M  +V +L  K                      L++ K  G           
Sbjct: 337 GESFYQSRMLSVVDFLRNKNMLEHDEGRQIMWPNEDRSGIPLTIVKSDGGFTYDTSDMAA 396

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                       I+YV D GQ  HF  + + A++  ILNP   R+  V FGVVLGED KK
Sbjct: 397 IRHRIEEEHCTWIIYVVDSGQSTHFNTIFKAAERCCILNPTAHRVHHVQFGVVLGEDGKK 456

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSGDTVKLS+LL+EG++RSL++L+ + R   LT  EL EAQ+AVAYGCIKY+DL HN
Sbjct: 457 FKTRSGDTVKLSDLLNEGMKRSLEQLRSRGRDEILTAQELFEAQEAVAYGCIKYSDLCHN 516

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           R  DYVFSFDKMLDDRGNTAVYLLY YTRI SIAR  G
Sbjct: 517 RISDYVFSFDKMLDDRGNTAVYLLYTYTRICSIARNLG 554



 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/243 (48%), Positives = 161/243 (66%), Gaps = 7/243 (2%)

Query: 877  DRCCPSHAKTHRKPPFTYTELIEQALKENGLCWVWRGVGRGQEEVQDSLRGYGLRRSLDK 936
            +RCC  +   HR     +  +    L E+G  +  R    G       L   G++RSL++
Sbjct: 429  ERCCILNPTAHRVHHVQFGVV----LGEDGKKFKTRS---GDTVKLSDLLNEGMKRSLEQ 481

Query: 937  LKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLY 996
            L+ + R   LT  EL EAQ+AVAYGCIKY+DL HNR  DYVFSFDKMLDDRGNTAVYLLY
Sbjct: 482  LRSRGRDEILTAQELFEAQEAVAYGCIKYSDLCHNRISDYVFSFDKMLDDRGNTAVYLLY 541

Query: 997  AYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHH 1056
             YTRI SIAR  G +   L     +  + L HEKE+ LAKTLL+M+D+++  ++DL LH 
Sbjct: 542  TYTRICSIARNLGDDFCYLLKVLDTVEIVLNHEKEWKLAKTLLKMHDIMIKCSKDLFLHF 601

Query: 1057 LCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTV 1116
            LCE+ Y++ T F+EFYD+CYCI+K+ +G+I  V+  R+L+ EATA V+++CF IL ++ V
Sbjct: 602  LCEFCYEVCTVFTEFYDSCYCIKKNKDGEIIEVNRSRVLMCEATAAVLRQCFYILGLKPV 661

Query: 1117 HKM 1119
             K+
Sbjct: 662  SKL 664



 Score =  122 bits (307), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 95/150 (63%), Gaps = 10/150 (6%)

Query: 3   VPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKI 62
           + V +  S+ ++L +VF  A+ +AFPE G+    +A  N     K+GD+QCN+AM L K 
Sbjct: 70  MEVTESFSITEHLENVFARAISLAFPEYGNIPVIIAPVNSASA-KYGDYQCNNAMGLAKK 128

Query: 63  FKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK 122
            K+ G  + P DIA        +EL     L+ +I+K+E    GFVNV+LS+ YA + +K
Sbjct: 129 MKEMGVNRTPRDIA--------NELQKCCPLSPIINKLEVGGAGFVNVYLSKDYAAQSLK 180

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           +I+ NG++PP + K+ RVLVDFSSPNIA++
Sbjct: 181 NILRNGIKPPRVLKR-RVLVDFSSPNIAKQ 209


>gi|307193340|gb|EFN76202.1| Arginyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]
          Length = 683

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/470 (51%), Positives = 315/470 (67%), Gaps = 38/470 (8%)

Query: 165 HDILISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFP 224
           H I I K   E ++ + +SS S+S +  +        SD +S+ + L D+F  A+ +A+P
Sbjct: 61  HRIAILKRTIEAQRAK-VSSDSTSLSVVSQD------SDVISINNTLCDIFREAIHLAYP 113

Query: 225 ELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELA 284
           ++ D    V ++N     KFGD+QCN AM L +     G K  P ++A +I S +     
Sbjct: 114 DISDPPVIVTTSNNL---KFGDYQCNSAMPLAQHLSSSGIKVIPRNVANNIISKLEESF- 169

Query: 285 TNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPN 344
                  ++DK E+A PGF+N++L R +    +   +  G  PP   ++ RV+VDFSSPN
Sbjct: 170 -------LVDKYEIAGPGFINIYLKRDFGQYTLNSWLKKGDVPPPCVQRKRVIVDFSSPN 222

Query: 345 IAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 404
           IAKEMHVGHLRSTIIGD+ISRLLEYLGHDV+R+NH+GDWGTQFGMLIAHLQDKFP+Y T 
Sbjct: 223 IAKEMHVGHLRSTIIGDSISRLLEYLGHDVLRINHIGDWGTQFGMLIAHLQDKFPNYSTV 282

Query: 405 SPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKI 464
           +PPI DLQAFYKESK RFD DE FKKRAY+CVV LQ  +P+  KAW+MICDVSR++FQK+
Sbjct: 283 APPIQDLQAFYKESKTRFDTDENFKKRAYECVVKLQALEPEITKAWQMICDVSRQEFQKL 342

Query: 465 YDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-IPMTIVKSDG 523
           Y RL++ + ERGESFYQKHME +V  LE K +LE D+GRKIMWGE R S IP+TIVKSDG
Sbjct: 343 YTRLDIKIIERGESFYQKHMELVVKKLESKNMLEEDNGRKIMWGEKRDSGIPLTIVKSDG 402

Query: 524 GFTYDTSDLAAIRQRIEEEKADW---IVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLG 580
           GFTYDTSD+AA++QRIE+E+ADW   ++YVTD GQ +HF++LE       +  R    L 
Sbjct: 403 GFTYDTSDMAALKQRIEDERADWASILIYVTDAGQSLHFQMLE-------SCGRRAGILK 455

Query: 581 HDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            +  R++HVG     FG+++   + KF    T+S     L     E  KR
Sbjct: 456 SN-HRMDHVG-----FGVVLGEDKKKFK---TRSGDTVKLIELLDEGLKR 496



 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/346 (60%), Positives = 250/346 (72%), Gaps = 47/346 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+ISRLLEYLGHDV+R+NH+GDWGTQFGMLIAHLQDKFP+Y T +PPI DLQAFY
Sbjct: 234 STIIGDSISRLLEYLGHDVLRINHIGDWGTQFGMLIAHLQDKFPNYSTVAPPIQDLQAFY 293

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD DE FKKRAY+CVV LQ  +P+  KAW+MICDVSR++FQK+Y RL++ + ER
Sbjct: 294 KESKTRFDTDENFKKRAYECVVKLQALEPEITKAWQMICDVSRQEFQKLYTRLDIKIIER 353

Query: 685 GESFYQKHMEQLVPYLEKKGN--------------------LSLTKKLG----------- 713
           GESFYQKHME +V  LE K                      L++ K  G           
Sbjct: 354 GESFYQKHMELVVKKLESKNMLEEDNGRKIMWGEKRDSGIPLTIVKSDGGFTYDTSDMAA 413

Query: 714 ---------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGED 758
                          ++YVTD GQ +HF++LE C ++AGIL  N  RMD VGFGVVLGED
Sbjct: 414 LKQRIEDERADWASILIYVTDAGQSLHFQMLESCGRRAGILKSNH-RMDHVGFGVVLGED 472

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADL 818
           +KKFKTRSGDTVKL ELLDEGL+R+L KLK+K R   L+  EL  AQ++VAYGCIKYADL
Sbjct: 473 KKKFKTRSGDTVKLIELLDEGLKRALQKLKEKERDKVLSEEELKMAQESVAYGCIKYADL 532

Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
            HNRN +Y+FSFDKML+D+GNTAVYLLYA TRI SIAR A +  ++
Sbjct: 533 VHNRNHEYIFSFDKMLEDKGNTAVYLLYALTRIRSIARMANVTQDE 578



 Score =  244 bits (622), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 147/191 (76%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R+L KLK+K R   L+  EL  AQ++VAYGCIKYADL HNRN +Y+FSFDKML+D+G
Sbjct: 493  GLKRALQKLKEKERDKVLSEEELKMAQESVAYGCIKYADLVHNRNHEYIFSFDKMLEDKG 552

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYA TRI SIAR A +  ++LR  A  T VSLEHEKE+ LAK LL+  DVL+ +
Sbjct: 553  NTAVYLLYALTRIRSIARMANVTQDELRKHAHDTLVSLEHEKEWKLAKVLLKFPDVLLNI 612

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            ++D+ LH LCE+ Y+IS AF+EFYD CYC+EK+  G+I  V+ GRLLL EATA VM KCF
Sbjct: 613  SQDMYLHQLCEFCYEISCAFTEFYDKCYCVEKNQAGEIVKVNMGRLLLTEATAIVMGKCF 672

Query: 1109 DILNIRTVHKM 1119
             +L ++ V +M
Sbjct: 673  ALLGLKPVTRM 683



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 11/146 (7%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           D +S+ + L D+F  A+ +A+P++ D    V ++N     KFGD+QCN AM L +     
Sbjct: 92  DVISINNTLCDIFREAIHLAYPDISDPPVIVTTSNNL---KFGDYQCNSAMPLAQHLSSS 148

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
           G K  P ++A +I S +            ++DK E A PGF+N++L R +    +   + 
Sbjct: 149 GIKVIPRNVANNIISKLEESF--------LVDKYEIAGPGFINIYLKRDFGQYTLNSWLK 200

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIARK 152
            G  PP   ++ RV+VDFSSPNIA++
Sbjct: 201 KGDVPPPCVQRKRVIVDFSSPNIAKE 226


>gi|195553723|ref|XP_002076727.1| GD24677 [Drosophila simulans]
 gi|194202717|gb|EDX16293.1| GD24677 [Drosophila simulans]
          Length = 665

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/454 (51%), Positives = 310/454 (68%), Gaps = 37/454 (8%)

Query: 168 LISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELG 227
           ++ K+IAEE    G ++S   ++               S+ ++L  VF  A+  AFPE  
Sbjct: 54  ILKKSIAEESNAGGGAASKPKESS--------------SITEHLESVFGQAIASAFPEFR 99

Query: 228 DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNP 287
           D    +A  N     KFGD+QCN+AM L K  K+KG  K P DIA        +EL  + 
Sbjct: 100 DTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLKEKGINKAPRDIA--------TELKGHC 150

Query: 288 SLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAK 347
             + +I+K+E+A  GFVNVFLS+ YA   + +++ NGV PP + KK RVLVDFSSPNIAK
Sbjct: 151 PASPIIEKLEIAGAGFVNVFLSKDYASSALSNLLRNGVTPPEVIKK-RVLVDFSSPNIAK 209

Query: 348 EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 407
           +MHVGHLRSTIIG+++ RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP+YL +SPP
Sbjct: 210 QMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLNESPP 269

Query: 408 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 467
           I+DLQ FYKESKKRFDEDE FKKRAY  VV+LQ+  P+  KAWE+IC+VSR++FQ IY+R
Sbjct: 270 ISDLQLFYKESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYER 329

Query: 468 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED-RGSIPMTIVKSDGGFT 526
           L++++ ERGESFYQ  M  +V YL  KGLLE+D+GR+IMW +D +  IP+TIVKSDGGFT
Sbjct: 330 LDISVKERGESFYQSRMLSVVEYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFT 389

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRL 586
           YDTSD+AAIR R+EEE  DWI+YV D GQ  HF  + ++       S +L  L H   R+
Sbjct: 390 YDTSDMAAIRHRLEEELCDWIIYVVDSGQSTHFNTIFKAA----ERSAILNPLSH---RV 442

Query: 587 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +HV     QFG+++     KF      +  +ADL
Sbjct: 443 DHV-----QFGVVLGEDGKKFKTRSGDTVKLADL 471



 Score =  394 bits (1013), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/346 (56%), Positives = 246/346 (71%), Gaps = 43/346 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP+YL +SPPI+DLQ FY
Sbjct: 218 STIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLNESPPISDLQLFY 277

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY  VV+LQ+  P+  KAWE+IC+VSR++FQ IY+RL++++ ER
Sbjct: 278 KESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYERLDISVKER 337

Query: 685 GESFYQKHMEQLVPYLEKKG--------------------NLSLTKKLG----------- 713
           GESFYQ  M  +V YL  KG                     L++ K  G           
Sbjct: 338 GESFYQSRMLSVVEYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAA 397

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                       I+YV D GQ  HF  + + A+++ ILNP   R+D V FGVVLGED KK
Sbjct: 398 IRHRLEEELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLSHRVDHVQFGVVLGEDGKK 457

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSGDTVKL++LLDEG++RSL +L+ + R   LTP EL +AQ+++AYGCIKY+DL HN
Sbjct: 458 FKTRSGDTVKLADLLDEGMKRSLQQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHN 517

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           R  DY+FSFDKML+DRGNTAVYLLY YTRI SIAR +G +  + PE
Sbjct: 518 RISDYIFSFDKMLEDRGNTAVYLLYTYTRICSIARNSGEDFTNLPE 563



 Score =  229 bits (584), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 146/191 (76%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++RSL +L+ + R   LTP EL +AQ+++AYGCIKY+DL HNR  DY+FSFDKML+DRG
Sbjct: 475  GMKRSLQQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRG 534

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLY YTRI SIAR +G +  +L    + T + L HEKE+ LAKTLL+++D+L+  
Sbjct: 535  NTAVYLLYTYTRICSIARNSGEDFTNLPEILKKTNIVLAHEKEWKLAKTLLKLHDILIKC 594

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            +++L LH LCE+ +++ T F+EFYD+CYCIEK+ +G I  V+  R+L+ EATA V+++CF
Sbjct: 595  SKELFLHFLCEFCFEVCTVFTEFYDSCYCIEKNKQGDIIAVNHSRILMCEATAAVLRQCF 654

Query: 1109 DILNIRTVHKM 1119
             IL ++ V KM
Sbjct: 655  YILGLKPVSKM 665



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 90/147 (61%), Gaps = 10/147 (6%)

Query: 6   RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           ++  S+ ++L  VF  A+  AFPE  D    +A  N     KFGD+QCN+AM L K  K+
Sbjct: 74  KESSSITEHLESVFGQAIASAFPEFRDTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLKE 132

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           KG  K P DIA        +EL  +   + +I+K+E A  GFVNVFLS+ YA   + +++
Sbjct: 133 KGINKAPRDIA--------TELKGHCPASPIIEKLEIAGAGFVNVFLSKDYASSALSNLL 184

Query: 126 VNGVQPPTLNKKLRVLVDFSSPNIARK 152
            NGV PP + KK RVLVDFSSPNIA++
Sbjct: 185 RNGVTPPEVIKK-RVLVDFSSPNIAKQ 210


>gi|195355443|ref|XP_002044201.1| GM22521 [Drosophila sechellia]
 gi|194129490|gb|EDW51533.1| GM22521 [Drosophila sechellia]
          Length = 665

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/454 (51%), Positives = 310/454 (68%), Gaps = 37/454 (8%)

Query: 168 LISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELG 227
           ++ K+IAEE    G +++   ++               S+ ++L  VF  A+  AFPE  
Sbjct: 54  ILKKSIAEESNAGGGAAAKPKESS--------------SITEHLESVFGQAIASAFPEFR 99

Query: 228 DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNP 287
           D    +A  N     KFGD+QCN+AM L K  K+KG  K P DIA        +EL  + 
Sbjct: 100 DTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLKEKGINKAPRDIA--------TELKGHC 150

Query: 288 SLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAK 347
             + +I+K+E+A  GFVNVFLS+ YA   + +++ NGV PP + KK RVLVDFSSPNIAK
Sbjct: 151 PASPIIEKLEIAGAGFVNVFLSKDYASSALSNLLRNGVTPPEVIKK-RVLVDFSSPNIAK 209

Query: 348 EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 407
           +MHVGHLRSTIIG+++ RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP+YL +SPP
Sbjct: 210 QMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLNESPP 269

Query: 408 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 467
           I+DLQ FYKESKKRFDEDE FKKRAY  VV+LQ+  P+  KAWE+IC+VSR++FQ IY+R
Sbjct: 270 ISDLQLFYKESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYER 329

Query: 468 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED-RGSIPMTIVKSDGGFT 526
           L++++ ERGESFYQ  M  +V YL  KGLLE+D+GR+IMW +D +  IP+TIVKSDGGFT
Sbjct: 330 LDISVKERGESFYQSRMLSVVEYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFT 389

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRL 586
           YDTSD+AAIR R+EEE  DWI+YV D GQ  HF  + ++       S +L  L H   R+
Sbjct: 390 YDTSDMAAIRHRLEEELCDWIIYVVDSGQSTHFNTIFKAA----ERSAILNPLSH---RV 442

Query: 587 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +HV     QFG+++     KF      +  +ADL
Sbjct: 443 DHV-----QFGVVLGEDGKKFKTRSGDTVKLADL 471



 Score =  394 bits (1013), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/346 (56%), Positives = 246/346 (71%), Gaps = 43/346 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP+YL +SPPI+DLQ FY
Sbjct: 218 STIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLNESPPISDLQLFY 277

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY  VV+LQ+  P+  KAWE+IC+VSR++FQ IY+RL++++ ER
Sbjct: 278 KESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYERLDISVKER 337

Query: 685 GESFYQKHMEQLVPYLEKKG--------------------NLSLTKKLG----------- 713
           GESFYQ  M  +V YL  KG                     L++ K  G           
Sbjct: 338 GESFYQSRMLSVVEYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAA 397

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                       I+YV D GQ  HF  + + A+++ ILNP   R+D V FGVVLGED KK
Sbjct: 398 IRHRLEEELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLSHRVDHVQFGVVLGEDGKK 457

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSGDTVKL++LLDEG++RSL +L+ + R   LTP EL +AQ+++AYGCIKY+DL HN
Sbjct: 458 FKTRSGDTVKLADLLDEGMKRSLQQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHN 517

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           R  DY+FSFDKML+DRGNTAVYLLY YTRI SIAR +G +  + PE
Sbjct: 518 RISDYIFSFDKMLEDRGNTAVYLLYTYTRICSIARNSGEDFTNLPE 563



 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 146/191 (76%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++RSL +L+ + R   LTP EL +AQ+++AYGCIKY+DL HNR  DY+FSFDKML+DRG
Sbjct: 475  GMKRSLQQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRG 534

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLY YTRI SIAR +G +  +L    + T + L HEKE+ LAKTLL+++D+L+  
Sbjct: 535  NTAVYLLYTYTRICSIARNSGEDFTNLPEILKKTNIVLAHEKEWKLAKTLLKLHDILIKC 594

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            +++L LH LCE+ +++ T F+EFYD+CYCIEK+ +G I  V+  R+L+ EATA V+++CF
Sbjct: 595  SKELFLHFLCEFCFEVCTVFTEFYDSCYCIEKNKQGDIIAVNHSRILMCEATAAVLRQCF 654

Query: 1109 DILNIRTVHKM 1119
             IL ++ V KM
Sbjct: 655  YILGLKPVSKM 665



 Score =  120 bits (302), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 90/147 (61%), Gaps = 10/147 (6%)

Query: 6   RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           ++  S+ ++L  VF  A+  AFPE  D    +A  N     KFGD+QCN+AM L K  K+
Sbjct: 74  KESSSITEHLESVFGQAIASAFPEFRDTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLKE 132

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           KG  K P DIA        +EL  +   + +I+K+E A  GFVNVFLS+ YA   + +++
Sbjct: 133 KGINKAPRDIA--------TELKGHCPASPIIEKLEIAGAGFVNVFLSKDYASSALSNLL 184

Query: 126 VNGVQPPTLNKKLRVLVDFSSPNIARK 152
            NGV PP + KK RVLVDFSSPNIA++
Sbjct: 185 RNGVTPPEVIKK-RVLVDFSSPNIAKQ 210


>gi|47221361|emb|CAF97279.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 697

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/393 (56%), Positives = 290/393 (73%), Gaps = 20/393 (5%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++   L +VF  A++ +FPEL +   ++A   +    KFGD+QCN AMA+ ++ K KG 
Sbjct: 74  VNINQRLQEVFGLAIRTSFPELENPPLALAPNQQP---KFGDYQCNSAMAMAQMLKAKGV 130

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K NP +IA+ I    T  L  N    ++I K E+A PGF+N+ L R +  + +  +++NG
Sbjct: 131 KVNPREIAERI----TRNLPDN----ELIQKTEIAGPGFINIHLKRSFVSKLLSKLLING 182

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           V+PP L  + RV+VDFSSPNIAKEMHVGHLRSTIIGD++SRL E+LGHDV+RLNHVGDWG
Sbjct: 183 VKPPPLASRKRVVVDFSSPNIAKEMHVGHLRSTIIGDSMSRLFEFLGHDVLRLNHVGDWG 242

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFDEDE FKKRAYQCVV LQ  +P
Sbjct: 243 TQFGMLIAHLQDKFPDYLTASPPIGDLQAFYKESKKRFDEDEAFKKRAYQCVVKLQSKEP 302

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           D+ KAW +ICDVSR++FQKIYD L++ + ERGES+YQ  M  +V   E +G ++LD+GRK
Sbjct: 303 DFIKAWNLICDVSRQEFQKIYDCLDIKIIERGESYYQDLMTDVVKEAEDRGFVQLDEGRK 362

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           I++   + S+P+T+VKSDGG+TYDTSDLAA+RQR+ EEKAD I+YVTD GQG HF+++  
Sbjct: 363 IIFAPGQ-SLPLTVVKSDGGYTYDTSDLAALRQRLFEEKADTIIYVTDSGQGSHFQVVFA 421

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
           +       +++L +    V R+ H G +G   G
Sbjct: 422 A-------AQMLGWYDPKVTRVEHAG-FGVVLG 446



 Score =  358 bits (920), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 199/375 (53%), Positives = 235/375 (62%), Gaps = 78/375 (20%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++SRL E+LGHDV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGDSMSRLFEFLGHDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTASPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAYQCVV LQ  +PD+ KAW +ICDVSR++FQKIYD L++ + ER
Sbjct: 274 KESKKRFDEDEAFKKRAYQCVVKLQSKEPDFIKAWNLICDVSRQEFQKIYDCLDIKIIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG----------------NLSLT------------------- 709
           GES+YQ  M  +V   E +G                +L LT                   
Sbjct: 334 GESYYQDLMTDVVKEAEDRGFVQLDEGRKIIFAPGQSLPLTVVKSDGGYTYDTSDLAALR 393

Query: 710 ------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGED----- 758
                 K   I+YVTD GQG HF+++   A+  G  +P  TR++  GFGVVLGED     
Sbjct: 394 QRLFEEKADTIIYVTDSGQGSHFQVVFAAAQMLGWYDPKVTRVEHAGFGVVLGEDKRLQR 453

Query: 759 -------------------------------RKKFKTRSGDTVKLSELLDEGLRRSLDKL 787
                                          RKKFKTRSG+TV+L +LLDEGL+RS+DKL
Sbjct: 454 SRNRIRHRYPAPTSVLGLRAADVSSALPNLPRKKFKTRSGETVRLMDLLDEGLKRSMDKL 513

Query: 788 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNL-DYVFSFDKMLDDRGNTAVYLLY 846
           K+K R   LT  EL +AQ+AVA    +        +L  YVFSFDKMLDDRGNTA YLLY
Sbjct: 514 KEKERDQVLTADELVKAQRAVALRLHQVRRPFPQPHLTTYVFSFDKMLDDRGNTAAYLLY 573

Query: 847 AYTRIASIARTAGIN 861
           A+TRI SIAR A I+
Sbjct: 574 AFTRIRSIARLANID 588



 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/193 (52%), Positives = 135/193 (69%), Gaps = 2/193 (1%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLD-YVFSFDKMLDDR 987
            GL+RS+DKLK+K R   LT  EL +AQ+AVA    +        +L  YVFSFDKMLDDR
Sbjct: 505  GLKRSMDKLKEKERDQVLTADELVKAQRAVALRLHQVRRPFPQPHLTTYVFSFDKMLDDR 564

Query: 988  GNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLML 1047
            GNTA YLLYA+TRI SIAR A I+   LR  A ST + LEHEKE+ L K +LR  ++L+ 
Sbjct: 565  GNTAAYLLYAFTRIRSIARLANIDEATLRKEAASTEILLEHEKEWKLGKCILRFPEILVK 624

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKK 1106
            +  DL LH LC+YLY+++T F+EFYD+CYC+EKD + G++  V+  R+LL +ATA +M +
Sbjct: 625  ILDDLLLHSLCDYLYELATTFTEFYDSCYCVEKDRQTGEVVKVNMWRMLLCDATAAIMAQ 684

Query: 1107 CFDILNIRTVHKM 1119
            CF IL +  V +M
Sbjct: 685  CFHILGLNPVERM 697



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 90/144 (62%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +++   L +VF  A++ +FPEL +   ++A   +    KFGD+QCN AMA+ ++ K KG 
Sbjct: 74  VNINQRLQEVFGLAIRTSFPELENPPLALAPNQQP---KFGDYQCNSAMAMAQMLKAKGV 130

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K NP +IA+ I    T  L  N    ++I K E A PGF+N+ L R +  + +  +++NG
Sbjct: 131 KVNPREIAERI----TRNLPDN----ELIQKTEIAGPGFINIHLKRSFVSKLLSKLLING 182

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           V+PP L  + RV+VDFSSPNIA++
Sbjct: 183 VKPPPLASRKRVVVDFSSPNIAKE 206


>gi|18859963|ref|NP_573081.1| Arginyl-tRNA synthetase [Drosophila melanogaster]
 gi|20178140|sp|Q9VXN4.1|SYRC_DROME RecName: Full=Probable arginine--tRNA ligase, cytoplasmic; AltName:
           Full=Arginyl-tRNA synthetase; Short=ArgRS
 gi|7293140|gb|AAF48524.1| Arginyl-tRNA synthetase [Drosophila melanogaster]
 gi|17944966|gb|AAL48546.1| RE02962p [Drosophila melanogaster]
 gi|220947778|gb|ACL86432.1| Aats-arg-PA [synthetic construct]
          Length = 665

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/464 (51%), Positives = 311/464 (67%), Gaps = 40/464 (8%)

Query: 168 LISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELG 227
           ++ K+IAEE    G   S   ++               S+ ++L  VF  A+  AFPE  
Sbjct: 54  ILKKSIAEESTAAGGDVSKPKESS--------------SITEHLESVFRQAIASAFPEFR 99

Query: 228 DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNP 287
           D    +A  N     KFGD+QCN+AM L K  K+KG  K P DIA        +EL  + 
Sbjct: 100 DTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLKEKGINKAPRDIA--------TELKGHC 150

Query: 288 SLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAK 347
             + +I+K+E+A  GFVNVFLS+ YA   + +++ NGV+PP + KK RVLVDFSSPNIAK
Sbjct: 151 PASPIIEKLEIAGAGFVNVFLSKDYASLALSNLLRNGVKPPEVIKK-RVLVDFSSPNIAK 209

Query: 348 EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 407
           +MHVGHLRSTIIG+++ RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP+YL +SPP
Sbjct: 210 QMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLNESPP 269

Query: 408 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 467
           I+DLQ FYKESKKRFDEDE FKKRAY  VV+LQ+  P+  KAWE+IC+VSR++FQ IY+R
Sbjct: 270 ISDLQLFYKESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYER 329

Query: 468 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED-RGSIPMTIVKSDGGFT 526
           L++++ ERGESFYQ  M  +V YL  KGLLE+D+GR+IMW +D +  IP+TIVKSDGGFT
Sbjct: 330 LDISVKERGESFYQSRMLSVVEYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFT 389

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRL 586
           YDTSD+AAIR R+EEE  DWI+YV D GQ  HF  + ++       S +L  L H   R+
Sbjct: 390 YDTSDMAAIRHRLEEELCDWIIYVVDSGQSTHFNTIFKAA----ERSAILNPLSH---RV 442

Query: 587 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           +HV     QFG+++     KF    T+S     L     E  KR
Sbjct: 443 DHV-----QFGVVLGEDGKKFK---TRSGDTVKLSDLLDEGMKR 478



 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/346 (56%), Positives = 246/346 (71%), Gaps = 43/346 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP+YL +SPPI+DLQ FY
Sbjct: 218 STIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLNESPPISDLQLFY 277

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY  VV+LQ+  P+  KAWE+IC+VSR++FQ IY+RL++++ ER
Sbjct: 278 KESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYERLDISVKER 337

Query: 685 GESFYQKHMEQLVPYLEKKG--------------------NLSLTKKLG----------- 713
           GESFYQ  M  +V YL  KG                     L++ K  G           
Sbjct: 338 GESFYQSRMLSVVEYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAA 397

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                       I+YV D GQ  HF  + + A+++ ILNP   R+D V FGVVLGED KK
Sbjct: 398 IRHRLEEELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLSHRVDHVQFGVVLGEDGKK 457

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSGDTVKLS+LLDEG++RSL +L+ + R   LTP EL +AQ+++AYGCIKY+DL HN
Sbjct: 458 FKTRSGDTVKLSDLLDEGMKRSLQQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHN 517

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           R  DY+FSFDKML+DRGNTAVYLLY YTRI SIAR +G +  + PE
Sbjct: 518 RISDYIFSFDKMLEDRGNTAVYLLYTYTRICSIARNSGEDFTNLPE 563



 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/191 (54%), Positives = 147/191 (76%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++RSL +L+ + R   LTP EL +AQ+++AYGCIKY+DL HNR  DY+FSFDKML+DRG
Sbjct: 475  GMKRSLQQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRG 534

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLY YTRI SIAR +G +  +L    + T + L+HEKE+ LAKTLL+++D+L+  
Sbjct: 535  NTAVYLLYTYTRICSIARNSGEDFTNLPEILKKTNIVLDHEKEWKLAKTLLKLHDILIKC 594

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            +++L LH LCE+ +++ T F+EFYD+CYCIEK+ +G I  V+  R+LL EATA V+++CF
Sbjct: 595  SKELFLHFLCEFCFEVCTVFTEFYDSCYCIEKNKQGDIIGVNHSRILLCEATAAVLRQCF 654

Query: 1109 DILNIRTVHKM 1119
             IL ++ V KM
Sbjct: 655  YILGLKPVSKM 665



 Score =  120 bits (301), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 91/147 (61%), Gaps = 10/147 (6%)

Query: 6   RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           ++  S+ ++L  VF  A+  AFPE  D    +A  N     KFGD+QCN+AM L K  K+
Sbjct: 74  KESSSITEHLESVFRQAIASAFPEFRDTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLKE 132

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           KG  K P DIA        +EL  +   + +I+K+E A  GFVNVFLS+ YA   + +++
Sbjct: 133 KGINKAPRDIA--------TELKGHCPASPIIEKLEIAGAGFVNVFLSKDYASLALSNLL 184

Query: 126 VNGVQPPTLNKKLRVLVDFSSPNIARK 152
            NGV+PP + KK RVLVDFSSPNIA++
Sbjct: 185 RNGVKPPEVIKK-RVLVDFSSPNIAKQ 210


>gi|47208421|emb|CAF89939.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 696

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/393 (56%), Positives = 290/393 (73%), Gaps = 20/393 (5%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++   L +VF  A++ +FPEL +   ++A   +    KFGD+QCN AMA+ ++ K KG 
Sbjct: 74  VNINQRLQEVFGLAIRTSFPELENPPLALAPNQQP---KFGDYQCNSAMAMAQMLKAKGV 130

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K NP +IA+ I    T  L  N    ++I K E+A PGF+N+ L R +  + +  +++NG
Sbjct: 131 KVNPREIAERI----TRNLPDN----ELIQKTEIAGPGFINIHLKRSFVSKLLSKLLING 182

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           V+PP L  + RV+VDFSSPNIAKEMHVGHLRSTIIGD++SRL E+LGHDV+RLNHVGDWG
Sbjct: 183 VKPPPLASRKRVVVDFSSPNIAKEMHVGHLRSTIIGDSMSRLFEFLGHDVLRLNHVGDWG 242

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFDEDE FKKRAYQCVV LQ  +P
Sbjct: 243 TQFGMLIAHLQDKFPDYLTASPPIGDLQAFYKESKKRFDEDEAFKKRAYQCVVKLQSKEP 302

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           D+ KAW +ICDVSR++FQKIYD L++ + ERGES+YQ  M  +V   E +G ++LD+GRK
Sbjct: 303 DFIKAWNLICDVSRQEFQKIYDCLDIKIIERGESYYQDLMTDVVKEAEDRGFVQLDEGRK 362

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           I++   + S+P+T+VKSDGG+TYDTSDLAA+RQR+ EEKAD I+YVTD GQG HF+++  
Sbjct: 363 IIFAPGQ-SLPLTVVKSDGGYTYDTSDLAALRQRLFEEKADTIIYVTDSGQGSHFQVVFA 421

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
           +       +++L +    V R+ H G +G   G
Sbjct: 422 A-------AQMLGWYDPKVTRVEHAG-FGVVLG 446



 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/374 (56%), Positives = 246/374 (65%), Gaps = 77/374 (20%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++SRL E+LGHDV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGDSMSRLFEFLGHDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTASPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAYQCVV LQ  +PD+ KAW +ICDVSR++FQKIYD L++ + ER
Sbjct: 274 KESKKRFDEDEAFKKRAYQCVVKLQSKEPDFIKAWNLICDVSRQEFQKIYDCLDIKIIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG----------------NLSLT------------------- 709
           GES+YQ  M  +V   E +G                +L LT                   
Sbjct: 334 GESYYQDLMTDVVKEAEDRGFVQLDEGRKIIFAPGQSLPLTVVKSDGGYTYDTSDLAALR 393

Query: 710 ------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGED----- 758
                 K   I+YVTD GQG HF+++   A+  G  +P  TR++  GFGVVLGED     
Sbjct: 394 QRLFEEKADTIIYVTDSGQGSHFQVVFAAAQMLGWYDPKVTRVEHAGFGVVLGEDKRLQR 453

Query: 759 -------------------------------RKKFKTRSGDTVKLSELLDEGLRRSLDKL 787
                                          RKKFKTRSG+TV+L +LLDEGL+RS+DKL
Sbjct: 454 SRNRIRHRYPAPTSVLGLRAADVSSALPNLPRKKFKTRSGETVRLMDLLDEGLKRSMDKL 513

Query: 788 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYA 847
           K+K R   LT  EL +AQ+AVA+GCIKYADLSHNR  DYVFSFDKMLDDRGNTA YLLYA
Sbjct: 514 KEKERDQVLTADELVKAQRAVAFGCIKYADLSHNRINDYVFSFDKMLDDRGNTAAYLLYA 573

Query: 848 YTRIASIARTAGIN 861
           +TRI SIAR A I+
Sbjct: 574 FTRIRSIARLANID 587



 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 146/192 (76%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL +AQ+AVA+GCIKYADLSHNR  DYVFSFDKMLDDRG
Sbjct: 505  GLKRSMDKLKEKERDQVLTADELVKAQRAVAFGCIKYADLSHNRINDYVFSFDKMLDDRG 564

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   LR  A ST + LEHEKE+ L K +LR  ++L+ +
Sbjct: 565  NTAAYLLYAFTRIRSIARLANIDEATLRKEAASTEILLEHEKEWKLGKCILRFPEILVKI 624

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+YLY+++T F+EFYD+CYC+EKD + G++  V+  R+LL +ATA +M +C
Sbjct: 625  LDDLLLHSLCDYLYELATTFTEFYDSCYCVEKDRQTGEVVKVNMWRMLLCDATAAIMAQC 684

Query: 1108 FDILNIRTVHKM 1119
            F IL +  V +M
Sbjct: 685  FHILGLNPVERM 696



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 90/144 (62%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +++   L +VF  A++ +FPEL +   ++A   +    KFGD+QCN AMA+ ++ K KG 
Sbjct: 74  VNINQRLQEVFGLAIRTSFPELENPPLALAPNQQP---KFGDYQCNSAMAMAQMLKAKGV 130

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K NP +IA+ I    T  L  N    ++I K E A PGF+N+ L R +  + +  +++NG
Sbjct: 131 KVNPREIAERI----TRNLPDN----ELIQKTEIAGPGFINIHLKRSFVSKLLSKLLING 182

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           V+PP L  + RV+VDFSSPNIA++
Sbjct: 183 VKPPPLASRKRVVVDFSSPNIAKE 206


>gi|432952270|ref|XP_004085032.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Oryzias
           latipes]
          Length = 660

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/442 (52%), Positives = 311/442 (70%), Gaps = 28/442 (6%)

Query: 200 PVSDRMS-VRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKI 258
           P S  M+ +   L  VF  A++ +FPEL +   +V    +    KFGD+QCN AMA+ ++
Sbjct: 68  PCSKSMTNINQRLQQVFGRAIRTSFPELDNPPLAVTPNQQA---KFGDYQCNSAMAIAQM 124

Query: 259 FKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK 318
            K K +K NP +IA+ I       L  N    ++I + E+A PGF+N+ L + +  + + 
Sbjct: 125 LKAKEQKVNPREIAERI----LQNLPDN----ELIQRTEIAGPGFINIHLKKSFVSKLLS 176

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
           +++VNGVQPP L  + +V+VDFSSPNIAKEMHVGHLRSTIIGD++ RL E+LG+DV+RLN
Sbjct: 177 NLLVNGVQPPPLPSRKKVVVDFSSPNIAKEMHVGHLRSTIIGDSMCRLFEFLGYDVLRLN 236

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIAHLQDKFPDYL+ SPPI+DLQAFYKESKKRFDEDE FKKRAY+CVV 
Sbjct: 237 HVGDWGTQFGMLIAHLQDKFPDYLSVSPPISDLQAFYKESKKRFDEDEDFKKRAYRCVVR 296

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ  +PD+ +AW++ICDVSR++FQK+YD L+V L ERGESFYQ+ M Q+V   E KGL+E
Sbjct: 297 LQSKEPDFLRAWKLICDVSRKEFQKVYDCLDVKLIERGESFYQELMTQVVKEFEDKGLVE 356

Query: 499 LDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           LD+GRK+++   + SIP+TIVKSDGG+TYDTSDLAA+ QRI +EKAD I+YVTD GQ VH
Sbjct: 357 LDEGRKLVFCPGQ-SIPLTIVKSDGGYTYDTSDLAALHQRIFQEKADIIIYVTDSGQAVH 415

Query: 559 FRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 618
           F+++         ++R++ +    V R+ H G     FG+++   + KF    T+S    
Sbjct: 416 FQVVF-------AVARMIGWYDPQVTRVEHAG-----FGVVLGEDKKKFK---TRSGDTV 460

Query: 619 DLQAFYKESKKRFDEDEIFKKR 640
            L    +E  KR  +  + K+R
Sbjct: 461 RLMDLLEEGLKRCKDKLLEKER 482



 Score =  411 bits (1057), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/338 (61%), Positives = 248/338 (73%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ RL E+LG+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYL+ SPPI+DLQAFY
Sbjct: 214 STIIGDSMCRLFEFLGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLSVSPPISDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY+CVV LQ  +PD+ +AW++ICDVSR++FQK+YD L+V L ER
Sbjct: 274 KESKKRFDEDEDFKKRAYRCVVRLQSKEPDFLRAWKLICDVSRKEFQKVYDCLDVKLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ+ M Q+V   E KG                   L++ K  G             
Sbjct: 334 GESFYQELMTQVVKEFEDKGLVELDEGRKLVFCPGQSIPLTIVKSDGGYTYDTSDLAALH 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YVTD GQ VHF+++   A+  G  +P  TR++  GFGVVLGED+KKFK
Sbjct: 394 QRIFQEKADIIIYVTDSGQAVHFQVVFAVARMIGWYDPQVTRVEHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+R  DKL +K R   LTP EL++AQ+AVA+GCIKYADLSHNR 
Sbjct: 454 TRSGDTVRLMDLLEEGLKRCKDKLLEKERDKVLTPQELAKAQRAVAFGCIKYADLSHNRI 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DYVFSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 514 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 551



 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R  DKL +K R   LTP EL++AQ+AVA+GCIKYADLSHNR  DYVFSFDKMLDDRG
Sbjct: 469  GLKRCKDKLLEKERDKVLTPQELAKAQRAVAFGCIKYADLSHNRINDYVFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   LR AA++T + L+HEKE+ L K +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEAALRRAAETTEILLDHEKEWKLGKCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC++LY+++T F+EFYD+CYC+EKD   G++  ++  R+LL EATA +M + 
Sbjct: 589  LDDLLLHALCDFLYELATTFTEFYDSCYCVEKDRRTGEVMKINMWRMLLCEATAAIMAQG 648

Query: 1108 FDILNIRTVHKM 1119
            F IL I  V +M
Sbjct: 649  FAILGISPVERM 660



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 11/143 (7%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           ++   L  VF  A++ +FPEL +   +V    +    KFGD+QCN AMA+ ++ K K +K
Sbjct: 75  NINQRLQQVFGRAIRTSFPELDNPPLAVTPNQQA---KFGDYQCNSAMAIAQMLKAKEQK 131

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
            NP +IA+ I       L  N    ++I + E A PGF+N+ L + +  + + +++VNGV
Sbjct: 132 VNPREIAERI----LQNLPDN----ELIQRTEIAGPGFINIHLKKSFVSKLLSNLLVNGV 183

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
           QPP L  + +V+VDFSSPNIA++
Sbjct: 184 QPPPLPSRKKVVVDFSSPNIAKE 206


>gi|118790236|ref|XP_318119.3| AGAP004708-PA [Anopheles gambiae str. PEST]
 gi|116122419|gb|EAA13294.3| AGAP004708-PA [Anopheles gambiae str. PEST]
          Length = 663

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 228/440 (51%), Positives = 303/440 (68%), Gaps = 29/440 (6%)

Query: 202 SDRMSVRDYLSDVFTHAVQVAFPE-LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFK 260
           S   S+   L  VFT A+Q AFP  L +   +++S+      KFGD+QCN AM + +  K
Sbjct: 74  SGNQSIVGELQQVFTEAIQKAFPSVLVEAVITISSSP-----KFGDYQCNSAMQIAQHLK 128

Query: 261 DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI 320
               K +P ++AQ + + +   +         +D++E+A  G+VN+FLSR Y  ++I  I
Sbjct: 129 QLSVKSSPREVAQKLVAELQKPIPC-------VDRLEIAGAGYVNIFLSRSYGEQRIMSI 181

Query: 321 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
           + +G+  P + KK RV+VDFSSPN+AKEMHVGHLRSTIIGD+I R LEYLGHDV+R+NH+
Sbjct: 182 LRHGIVVPLIEKK-RVIVDFSSPNVAKEMHVGHLRSTIIGDSICRFLEYLGHDVLRINHI 240

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGMLIAHLQD+FP++ T+SPPI+DLQAFYKESK RFD DE+FKKRAY+CVV LQ
Sbjct: 241 GDWGTQFGMLIAHLQDRFPNFQTESPPISDLQAFYKESKVRFDSDEVFKKRAYECVVKLQ 300

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
             +  Y KAW +ICDVSR++FQ IY+RL+V L ERGESFYQ  ME++V  L++ G LE D
Sbjct: 301 SGELSYLKAWNLICDVSRKEFQTIYNRLDVKLVERGESFYQSRMEKIVEELKQDGFLEED 360

Query: 501 DGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +GR IMWGE+R  IP+TIVKSDGGFTYDTSD+AAI+QR++EEKADW++YVTD GQ  HF+
Sbjct: 361 EGRLIMWGENRAGIPLTIVKSDGGFTYDTSDMAAIKQRLQEEKADWLIYVTDAGQATHFQ 420

Query: 561 LLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                TI   + ++  + L     R++HVG     FG+++     KF    T+S     L
Sbjct: 421 -----TIF--SCAKRAKILQESKHRVDHVG-----FGVVLGEDGKKFK---TRSGDTVKL 465

Query: 621 QAFYKESKKRFDEDEIFKKR 640
                E  +R  E  + K+R
Sbjct: 466 TELLNEGLRRAMEKLVQKER 485



 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/337 (60%), Positives = 246/337 (72%), Gaps = 42/337 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I R LEYLGHDV+R+NH+GDWGTQFGMLIAHLQD+FP++ T+SPPI+DLQAFY
Sbjct: 216 STIIGDSICRFLEYLGHDVLRINHIGDWGTQFGMLIAHLQDRFPNFQTESPPISDLQAFY 275

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD DE+FKKRAY+CVV LQ  +  Y KAW +ICDVSR++FQ IY+RL+V L ER
Sbjct: 276 KESKVRFDSDEVFKKRAYECVVKLQSGELSYLKAWNLICDVSRKEFQTIYNRLDVKLVER 335

Query: 685 GESFYQKHMEQLVPYLEKKG-------------------NLSLTKKLG------------ 713
           GESFYQ  ME++V  L++ G                    L++ K  G            
Sbjct: 336 GESFYQSRMEKIVEELKQDGFLEEDEGRLIMWGENRAGIPLTIVKSDGGFTYDTSDMAAI 395

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      ++YVTD GQ  HF+ +  CAK+A IL  +K R+D VGFGVVLGED KKF
Sbjct: 396 KQRLQEEKADWLIYVTDAGQATHFQTIFSCAKRAKILQESKHRVDHVGFGVVLGEDGKKF 455

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTVKL+ELL+EGLRR+++KL  K R+  LT  EL  AQ++VAYGCIKYADLSHNR
Sbjct: 456 KTRSGDTVKLTELLNEGLRRAMEKLVQKERNLVLTQEELVAAQESVAYGCIKYADLSHNR 515

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           N +YVFSFDKML+D+GNTAVYLLYAYTRI SIAR  G
Sbjct: 516 NNEYVFSFDKMLEDKGNTAVYLLYAYTRIRSIARKCG 552



 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 156/192 (81%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GLRR+++KL  K R+  LT  EL  AQ++VAYGCIKYADLSHNRN +YVFSFDKML+D+G
Sbjct: 472  GLRRAMEKLVQKERNLVLTQEELVAAQESVAYGCIKYADLSHNRNNEYVFSFDKMLEDKG 531

Query: 989  NTAVYLLYAYTRIASIARTAGIN-SEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLML 1047
            NTAVYLLYAYTRI SIAR  G + + D++    ST + L+HEKE+ LAK LLR  DV++L
Sbjct: 532  NTAVYLLYAYTRIRSIARKCGGDFANDMQKVIDSTVIKLDHEKEWKLAKVLLRFTDVMLL 591

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
            + ++L LHHLCE++Y+I TAFSEFYD+CYCIEK+ +G+I TV+  R+LL EAT+KV++KC
Sbjct: 592  IMKNLSLHHLCEFVYEICTAFSEFYDSCYCIEKNKQGEIITVYPSRVLLCEATSKVLEKC 651

Query: 1108 FDILNIRTVHKM 1119
            FDIL ++ VHK+
Sbjct: 652  FDILGLKPVHKI 663



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 16/156 (10%)

Query: 10  SVRDYLSDVFTHAVQVAFPE-LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           S+   L  VFT A+Q AFP  L +   +++S+      KFGD+QCN AM + +  K    
Sbjct: 78  SIVGELQQVFTEAIQKAFPSVLVEAVITISSSP-----KFGDYQCNSAMQIAQHLKQLSV 132

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K +P ++AQ + + +   +         +D++E A  G+VN+FLSR Y  +++  I+ +G
Sbjct: 133 KSSPREVAQKLVAELQKPIPC-------VDRLEIAGAGYVNIFLSRSYGEQRIMSILRHG 185

Query: 129 VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           +  P + KK RV+VDFSSPN+A++      HL S I
Sbjct: 186 IVVPLIEKK-RVIVDFSSPNVAKE--MHVGHLRSTI 218


>gi|348533015|ref|XP_003454001.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Oreochromis
           niloticus]
          Length = 661

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/403 (54%), Positives = 296/403 (73%), Gaps = 24/403 (5%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++   L +VF  A++ + PEL +   S+A + +    KFGD+QCN AM++ ++ K KG 
Sbjct: 75  LNINQRLQEVFGEAIRASCPELDNPPLSIAPSQQA---KFGDYQCNSAMSMSQMLKAKGT 131

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K NP +IA+ I       L  N    +++ K EVA PGF+N++L + +  +Q+ ++++NG
Sbjct: 132 KMNPREIAEKI----IKNLPDN----ELVQKTEVAGPGFINIYLQKTFVSKQLSNLLING 183

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           VQPP L  K +V+VDFSSPNIAKEMHVGHLRSTIIGD++ RL E+LG++V+RLNHVGDWG
Sbjct: 184 VQPPPLPSKKKVVVDFSSPNIAKEMHVGHLRSTIIGDSMCRLFEFLGYEVLRLNHVGDWG 243

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHLQD FPDYLT SPPI+DLQAFYKESKKRFD +E FKKRAYQCVV LQ  +P
Sbjct: 244 TQFGMLIAHLQDMFPDYLTVSPPISDLQAFYKESKKRFDTEEEFKKRAYQCVVKLQSKEP 303

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           ++ K W +ICDVSR++FQKIYD L++ L ERGES+YQ  M ++V   EKKGL+ELD+GRK
Sbjct: 304 EFIKGWNLICDVSRKEFQKIYDCLDIKLIERGESYYQDLMVEVVKEFEKKGLVELDEGRK 363

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           +++  ++  IP+TIVKSDGG+TYDTSDLAAIRQRI EEKAD I+YVTD GQ  HF+++  
Sbjct: 364 VVFPPEQ-PIPLTIVKSDGGYTYDTSDLAAIRQRIFEEKADIIIYVTDSGQSTHFQVVFA 422

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +       ++L+ +    V R+ H G     FG+++   + KF
Sbjct: 423 A-------AQLIGWYNPKVTRVEHAG-----FGVVLGEDKKKF 453



 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/338 (60%), Positives = 246/338 (72%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ RL E+LG++V+RLNHVGDWGTQFGMLIAHLQD FPDYLT SPPI+DLQAFY
Sbjct: 215 STIIGDSMCRLFEFLGYEVLRLNHVGDWGTQFGMLIAHLQDMFPDYLTVSPPISDLQAFY 274

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +P++ K W +ICDVSR++FQKIYD L++ L ER
Sbjct: 275 KESKKRFDTEEEFKKRAYQCVVKLQSKEPEFIKGWNLICDVSRKEFQKIYDCLDIKLIER 334

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GES+YQ  M ++V   EKKG                   L++ K  G             
Sbjct: 335 GESYYQDLMVEVVKEFEKKGLVELDEGRKVVFPPEQPIPLTIVKSDGGYTYDTSDLAAIR 394

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YVTD GQ  HF+++   A+  G  NP  TR++  GFGVVLGED+KKFK
Sbjct: 395 QRIFEEKADIIIYVTDSGQSTHFQVVFAAAQLIGWYNPKVTRVEHAGFGVVLGEDKKKFK 454

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LLDEGL+RS+DKLK+K R   LTP EL++AQ+AVA+GCIKYADLSHNRN
Sbjct: 455 TRSGDTVRLMDLLDEGLKRSMDKLKEKERDKVLTPEELTKAQRAVAFGCIKYADLSHNRN 514

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DYVFSFDKMLDDRGNTA YLLYA+TRI SI R A I+
Sbjct: 515 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRSITRLAKID 552



 Score =  239 bits (611), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 148/192 (77%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LTP EL++AQ+AVA+GCIKYADLSHNRN DYVFSFDKMLDDRG
Sbjct: 470  GLKRSMDKLKEKERDKVLTPEELTKAQRAVAFGCIKYADLSHNRNNDYVFSFDKMLDDRG 529

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SI R A I+   L+ AA++T + L+HEKE+ L K + R  ++L  +
Sbjct: 530  NTAAYLLYAFTRIRSITRLAKIDEATLKKAAETTEILLDHEKEWKLGKCIQRFPEILQKI 589

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+YLY+++T F+EFYD+CYC+EKD + G++  ++  R+LL EATA +M K 
Sbjct: 590  LDDLLLHTLCDYLYELATTFTEFYDSCYCVEKDRQTGEVIKINMWRMLLCEATAAIMAKG 649

Query: 1108 FDILNIRTVHKM 1119
            FDIL +  V +M
Sbjct: 650  FDILGLTPVERM 661



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 92/144 (63%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +++   L +VF  A++ + PEL +   S+A + +    KFGD+QCN AM++ ++ K KG 
Sbjct: 75  LNINQRLQEVFGEAIRASCPELDNPPLSIAPSQQA---KFGDYQCNSAMSMSQMLKAKGT 131

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K NP +IA+ I       L  N    +++ K E A PGF+N++L + +  +Q+ ++++NG
Sbjct: 132 KMNPREIAEKI----IKNLPDN----ELVQKTEVAGPGFINIYLQKTFVSKQLSNLLING 183

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           VQPP L  K +V+VDFSSPNIA++
Sbjct: 184 VQPPPLPSKKKVVVDFSSPNIAKE 207


>gi|387916052|gb|AFK11635.1| Arginyl-tRNA synthetase, cytoplasmic [Callorhinchus milii]
          Length = 660

 Score =  451 bits (1160), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/446 (51%), Positives = 311/446 (69%), Gaps = 28/446 (6%)

Query: 195 KKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMA 254
           +KMN P +   ++ + L  +F  A+ VAFP+L +    VA   +    KFGD+QCN AMA
Sbjct: 65  EKMN-PGACLTNINETLQTIFRVAINVAFPDLENPPLVVAPNQQP---KFGDYQCNSAMA 120

Query: 255 LCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAG 314
           + ++ K KG+K NP +IAQ+I + +           +VI+K+E+A PGF+NV L + +  
Sbjct: 121 IAQLLKSKGQKVNPREIAQNIVNSIPQN--------EVIEKLEIAGPGFINVHLKKDFVS 172

Query: 315 EQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDV 374
           + +  ++ +GVQPP++  K +V+VDFSSPNIAKEMHVGHLRSTIIGD++ RL E++GHDV
Sbjct: 173 KLLTSLLKHGVQPPSIGPKKKVVVDFSSPNIAKEMHVGHLRSTIIGDSMCRLFEFVGHDV 232

Query: 375 VRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQ 434
           +RLNHVGDWGTQFGMLIAHLQD+FP+Y   SPPI DLQAFYKESKKRFDE+E FKKRAYQ
Sbjct: 233 LRLNHVGDWGTQFGMLIAHLQDQFPNYQIISPPIGDLQAFYKESKKRFDEEEAFKKRAYQ 292

Query: 435 CVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKK 494
           CVV LQ  DP+  KAW +IC+VSR++FQKIYDRL++TL ERGES+YQ  M+++V   E+ 
Sbjct: 293 CVVQLQAHDPNIIKAWNLICNVSRKEFQKIYDRLDITLIERGESYYQSMMKEVVKLFEEN 352

Query: 495 GLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLG 554
           G++ELD+GRKI++     S+P+TI KSDGG+TYDTSDLAA+RQRI +EKAD I+YV D G
Sbjct: 353 GIVELDEGRKIVFPPG-CSLPLTIEKSDGGYTYDTSDLAALRQRIFDEKADIIIYVVDNG 411

Query: 555 QGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKS 614
           Q VHF+ +  +       +RL+ +   +  R+ H G     FG+++   + KF    T+S
Sbjct: 412 QSVHFQTVFAA-------ARLIGWFDSEKTRVEHAG-----FGVVLGEDKKKFK---TRS 456

Query: 615 PPIADLQAFYKESKKRFDEDEIFKKR 640
                L     E  KR  +  + KKR
Sbjct: 457 GETVRLIDLLNEGLKRSMDKLVEKKR 482



 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/338 (59%), Positives = 242/338 (71%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ RL E++GHDV+RLNHVGDWGTQFGMLIAHLQD+FP+Y   SPPI DLQAFY
Sbjct: 214 STIIGDSMCRLFEFVGHDVLRLNHVGDWGTQFGMLIAHLQDQFPNYQIISPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDE+E FKKRAYQCVV LQ  DP+  KAW +IC+VSR++FQKIYDRL++TL ER
Sbjct: 274 KESKKRFDEEEAFKKRAYQCVVQLQAHDPNIIKAWNLICNVSRKEFQKIYDRLDITLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GES+YQ  M+++V   E+ G                   L++ K  G             
Sbjct: 334 GESYYQSMMKEVVKLFEENGIVELDEGRKIVFPPGCSLPLTIEKSDGGYTYDTSDLAALR 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +  KTR++  GFGVVLGED+KKFK
Sbjct: 394 QRIFDEKADIIIYVVDNGQSVHFQTVFAAARLIGWFDSEKTRVEHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKL +K R   LTP EL  AQ+AVA+GCIKYADLSHNR 
Sbjct: 454 TRSGETVRLIDLLNEGLKRSMDKLVEKKRDKVLTPAELKAAQEAVAFGCIKYADLSHNRT 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DYVF FDKMLDDRGNTA YLLYA+TRI SI RTA I+
Sbjct: 514 NDYVFCFDKMLDDRGNTAAYLLYAFTRIRSITRTANIS 551



 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKL +K R   LTP EL  AQ+AVA+GCIKYADLSHNR  DYVF FDKMLDDRG
Sbjct: 469  GLKRSMDKLVEKKRDKVLTPAELKAAQEAVAFGCIKYADLSHNRTNDYVFCFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SI RTA I+   L+ AA  T + L+HEKE+ L K +LR  +VL  +
Sbjct: 529  NTAAYLLYAFTRIRSITRTANISPTTLQKAAAETTILLDHEKEWKLGKCILRFPEVLQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+YLYD++T F+EFYDNCYC+EKD + G++  V+  R+LL EATA VM+K 
Sbjct: 589  LEDLYLHSLCDYLYDLATTFTEFYDNCYCVEKDRQTGEVVKVNMWRMLLCEATAAVMEKS 648

Query: 1108 FDILNIRTVHKM 1119
            F IL +R V +M
Sbjct: 649  FHILGLRHVERM 660



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 91/143 (63%), Gaps = 11/143 (7%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           ++ + L  +F  A+ VAFP+L +    VA   +    KFGD+QCN AMA+ ++ K KG+K
Sbjct: 75  NINETLQTIFRVAINVAFPDLENPPLVVAPNQQP---KFGDYQCNSAMAIAQLLKSKGQK 131

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
            NP +IAQ+I + +           +VI+K+E A PGF+NV L + +  + +  ++ +GV
Sbjct: 132 VNPREIAQNIVNSIPQN--------EVIEKLEIAGPGFINVHLKKDFVSKLLTSLLKHGV 183

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
           QPP++  K +V+VDFSSPNIA++
Sbjct: 184 QPPSIGPKKKVVVDFSSPNIAKE 206


>gi|194894171|ref|XP_001978023.1| GG19367 [Drosophila erecta]
 gi|190649672|gb|EDV46950.1| GG19367 [Drosophila erecta]
          Length = 664

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/458 (52%), Positives = 308/458 (67%), Gaps = 46/458 (10%)

Query: 168 LISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELG 227
           ++ K+IAEE           S   G A K+     +  S+ ++L  VF  A+  AFPE  
Sbjct: 54  ILKKSIAEE-----------SNAAGGAPKLK----ESSSITEHLESVFGQAIASAFPEFR 98

Query: 228 DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNP 287
           D    +A  N     KFGD+QCN+AM L K  K+KG  K P DIA        +EL  + 
Sbjct: 99  DTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLKEKGISKAPRDIA--------TELKGHC 149

Query: 288 SLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAK 347
             + +I+K+E+A  GFVNVFLS+ YA   + +++  GV+PP + KK RVLVDFSSPNIAK
Sbjct: 150 PPSPLIEKLEIAGAGFVNVFLSKDYAASALSNLLRYGVEPPEV-KKRRVLVDFSSPNIAK 208

Query: 348 EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 407
           +MHVGHLRSTIIG+++ RLLE+L HDV+R NH+GDWGTQFGMLIAHL+D+FP+YL +SPP
Sbjct: 209 QMHVGHLRSTIIGESLCRLLEFLQHDVIRTNHLGDWGTQFGMLIAHLEDRFPNYLNESPP 268

Query: 408 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 467
           I+DLQ FYKESKKRFDEDE FKKRAY  VV+LQ+  P+  KAWE+IC+VSR++FQ IY+R
Sbjct: 269 ISDLQLFYKESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYER 328

Query: 468 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED-RGSIPMTIVKSDGGFT 526
           L++++ ERGESFYQ  M  +V YL  KGLLE D+GRKIMW +D +  IP+TIVKSDGGFT
Sbjct: 329 LDISIKERGESFYQSRMLSVVEYLRGKGLLEEDEGRKIMWPDDTKTGIPLTIVKSDGGFT 388

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL----EESTIIGDTISRLLEYLGHD 582
           YDTSD+AAIR R+EEE  DWI+YV D GQ  HF  +    E STI        L  L H 
Sbjct: 389 YDTSDMAAIRYRLEEELCDWIIYVVDAGQSTHFNTIFKAAERSTI--------LNPLTH- 439

Query: 583 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
             R++HV     QFG+++     KF      +  +ADL
Sbjct: 440 --RVDHV-----QFGVVLGEDGKKFKTRSGDTVKLADL 470



 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/346 (56%), Positives = 244/346 (70%), Gaps = 43/346 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RLLE+L HDV+R NH+GDWGTQFGMLIAHL+D+FP+YL +SPPI+DLQ FY
Sbjct: 217 STIIGESLCRLLEFLQHDVIRTNHLGDWGTQFGMLIAHLEDRFPNYLNESPPISDLQLFY 276

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY  VV+LQ+  P+  KAWE+IC+VSR++FQ IY+RL++++ ER
Sbjct: 277 KESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYERLDISIKER 336

Query: 685 GESFYQKHMEQLVPYLEKKG--------------------NLSLTKKLG----------- 713
           GESFYQ  M  +V YL  KG                     L++ K  G           
Sbjct: 337 GESFYQSRMLSVVEYLRGKGLLEEDEGRKIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAA 396

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                       I+YV D GQ  HF  + + A+++ ILNP   R+D V FGVVLGED KK
Sbjct: 397 IRYRLEEELCDWIIYVVDAGQSTHFNTIFKAAERSTILNPLTHRVDHVQFGVVLGEDGKK 456

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSGDTVKL++LLDEGL+RSL +L+ + R   LTP EL +AQ+++AYGCIKY+DL HN
Sbjct: 457 FKTRSGDTVKLADLLDEGLKRSLLQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHN 516

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           R  DY+FSFDKML+DRGNTAVYLLY YTRI SIAR  G +  + PE
Sbjct: 517 RISDYIFSFDKMLEDRGNTAVYLLYTYTRICSIARNCGEDFSNLPE 562



 Score =  229 bits (583), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 145/191 (75%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RSL +L+ + R   LTP EL +AQ+++AYGCIKY+DL HNR  DY+FSFDKML+DRG
Sbjct: 474  GLKRSLLQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRG 533

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLY YTRI SIAR  G +  +L    + T + L HEKE+ LAKTLL+++D+L+  
Sbjct: 534  NTAVYLLYTYTRICSIARNCGEDFSNLPEILKKTNIVLAHEKEWKLAKTLLKLHDILIKC 593

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            +++L LH LCE+ +++ T F+EFYD+CYCIEK+ +G I  V+  R+LL EATA V+++CF
Sbjct: 594  SKELFLHFLCEFCFEVCTVFTEFYDSCYCIEKNKQGDIIAVNHSRILLCEATAAVLRQCF 653

Query: 1109 DILNIRTVHKM 1119
             IL ++ V KM
Sbjct: 654  YILGLKPVSKM 664



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 91/148 (61%), Gaps = 10/148 (6%)

Query: 5   VRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFK 64
           +++  S+ ++L  VF  A+  AFPE  D    +A  N     KFGD+QCN+AM L K  K
Sbjct: 72  LKESSSITEHLESVFGQAIASAFPEFRDTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLK 130

Query: 65  DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI 124
           +KG  K P DIA        +EL  +   + +I+K+E A  GFVNVFLS+ YA   + ++
Sbjct: 131 EKGISKAPRDIA--------TELKGHCPPSPLIEKLEIAGAGFVNVFLSKDYAASALSNL 182

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           +  GV+PP + KK RVLVDFSSPNIA++
Sbjct: 183 LRYGVEPPEV-KKRRVLVDFSSPNIAKQ 209


>gi|387542956|gb|AFJ72105.1| arginyl-tRNA synthetase, cytoplasmic [Macaca mulatta]
          Length = 660

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/432 (52%), Positives = 302/432 (69%), Gaps = 24/432 (5%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +   HKFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQ---HKFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P + +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPAVGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESVSRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIERGESFYQDRMNDIVQE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLSEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDSGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFKTR 455

Query: 611 LTKSPPIADLQA 622
             ++  + DL  
Sbjct: 456 AGETVRLMDLMG 467



 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/340 (59%), Positives = 240/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESVSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVQEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLSEEKADMIIYVVDSGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TR+G+TV+L +L+ EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR 
Sbjct: 454 TRAGETVRLMDLMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 96/151 (63%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +   HKFGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQ---HKFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P + +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPAVGENKKVIVDFSSPNIAKE 206


>gi|332030674|gb|EGI70362.1| Arginyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]
          Length = 684

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/434 (52%), Positives = 301/434 (69%), Gaps = 33/434 (7%)

Query: 202 SDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           +D +S+++ +S VF  A+  A+P++ D    V ++      KFGD+QCN AM L +    
Sbjct: 92  ADTISIKNNVSAVFHKAISAAYPDILDPPVIVTTSTNP---KFGDYQCNSAMPLAQQLSS 148

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
            G K +P D+A+ I S +         ++ VI+K E+A  GF+N++L R +    +++ +
Sbjct: 149 SGFKVSPRDVAKEIMSKL--------KVSSVIEKYEIAGAGFINIYLKREFGQSVLRNWL 200

Query: 322 VNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
             G V PP + KK RV+VDFSSPNIAKEMHVGHLRSTIIGD+ISRLLEYLGHDV+RLNHV
Sbjct: 201 WAGEVLPPYVKKK-RVVVDFSSPNIAKEMHVGHLRSTIIGDSISRLLEYLGHDVLRLNHV 259

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGMLIAHLQDKFP+YLT +PPI DLQ FYKESK RFDEDE FKKRAY+CVV LQ
Sbjct: 260 GDWGTQFGMLIAHLQDKFPNYLTITPPIEDLQTFYKESKTRFDEDEEFKKRAYECVVKLQ 319

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
            F+P+  KAW+MICDVSR++F+K+Y RL++ L ERGESFYQK+ME ++  LE K +LE D
Sbjct: 320 AFEPNMTKAWKMICDVSRQEFEKVYTRLDIKLIERGESFYQKYMESIIQELESKNMLEED 379

Query: 501 DGRKIMWGEDRGS-IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADW---IVYVTDLGQG 556
           +GRKIMWGE  GS +P+TIVKSDGGFTYDTSD+A I+ RIE+E+ADW   ++YVTD GQ 
Sbjct: 380 NGRKIMWGEKHGSGVPLTIVKSDGGFTYDTSDMACIKYRIEKERADWASILIYVTDAGQS 439

Query: 557 VHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 616
           +HF++++        +        H   R++HVG     FG ++   + KF    T+S  
Sbjct: 440 LHFQIIKSCAKRAGILKSF-----H---RMDHVG-----FGAVLGEDKKKFK---TRSGD 483

Query: 617 IADLQAFYKESKKR 630
              L     E  KR
Sbjct: 484 TVKLSELLDEGLKR 497



 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/346 (61%), Positives = 253/346 (73%), Gaps = 47/346 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+ISRLLEYLGHDV+RLNHVGDWGTQFGMLIAHLQDKFP+YLT +PPI DLQ FY
Sbjct: 235 STIIGDSISRLLEYLGHDVLRLNHVGDWGTQFGMLIAHLQDKFPNYLTITPPIEDLQTFY 294

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFDEDE FKKRAY+CVV LQ F+P+  KAW+MICDVSR++F+K+Y RL++ L ER
Sbjct: 295 KESKTRFDEDEEFKKRAYECVVKLQAFEPNMTKAWKMICDVSRQEFEKVYTRLDIKLIER 354

Query: 685 GESFYQKHMEQLVPYLEKKGN--------------------LSLTKKLG----------- 713
           GESFYQK+ME ++  LE K                      L++ K  G           
Sbjct: 355 GESFYQKYMESIIQELESKNMLEEDNGRKIMWGEKHGSGVPLTIVKSDGGFTYDTSDMAC 414

Query: 714 ---------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGED 758
                          ++YVTD GQ +HF++++ CAK+AGIL     RMD VGFG VLGED
Sbjct: 415 IKYRIEKERADWASILIYVTDAGQSLHFQIIKSCAKRAGILKSFH-RMDHVGFGAVLGED 473

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADL 818
           +KKFKTRSGDTVKLSELLDEGL+R+L KLK+K R   L+  EL  AQ++VAYGCIKYADL
Sbjct: 474 KKKFKTRSGDTVKLSELLDEGLKRALQKLKEKERDKVLSQEELKAAQESVAYGCIKYADL 533

Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
            HNRN +YVFSFDKML+D+GNTAVYLLYA TRI SIARTA I  ++
Sbjct: 534 LHNRNHEYVFSFDKMLEDKGNTAVYLLYALTRIRSIARTANITKDE 579



 Score =  246 bits (627), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 149/191 (78%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R+L KLK+K R   L+  EL  AQ++VAYGCIKYADL HNRN +YVFSFDKML+D+G
Sbjct: 494  GLKRALQKLKEKERDKVLSQEELKAAQESVAYGCIKYADLLHNRNHEYVFSFDKMLEDKG 553

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYA TRI SIARTA I  ++LR  +   P+SLEHEKE+ LAK LL+  DV++ V
Sbjct: 554  NTAVYLLYALTRIRSIARTANITKDELRQRSHEVPISLEHEKEWKLAKVLLKFPDVILGV 613

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            T DL L+ LCE+ Y++S AF+EFYD CYC+EKD  G+I  ++ GRLLL EATA +++KCF
Sbjct: 614  TEDLYLNPLCEFCYEVSCAFTEFYDKCYCVEKDQSGEIVKINMGRLLLMEATALILEKCF 673

Query: 1109 DILNIRTVHKM 1119
             +L +++V +M
Sbjct: 674  SLLGLKSVAQM 684



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 13/147 (8%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           D +S+++ +S VF  A+  A+P++ D    V ++      KFGD+QCN AM L +     
Sbjct: 93  DTISIKNNVSAVFHKAISAAYPDILDPPVIVTTSTNP---KFGDYQCNSAMPLAQQLSSS 149

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
           G K +P D+A+ I S +         ++ VI+K E A  GF+N++L R +    +++ + 
Sbjct: 150 GFKVSPRDVAKEIMSKL--------KVSSVIEKYEIAGAGFINIYLKREFGQSVLRNWLW 201

Query: 127 NG-VQPPTLNKKLRVLVDFSSPNIARK 152
            G V PP + KK RV+VDFSSPNIA++
Sbjct: 202 AGEVLPPYVKKK-RVVVDFSSPNIAKE 227


>gi|195457058|ref|XP_002075407.1| GK15297 [Drosophila willistoni]
 gi|194171492|gb|EDW86393.1| GK15297 [Drosophila willistoni]
          Length = 649

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/454 (51%), Positives = 307/454 (67%), Gaps = 38/454 (8%)

Query: 168 LISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELG 227
           ++++AI++E  K G ++ S S              D +S+ ++L  V   A+  AFP+L 
Sbjct: 62  ILNQAISDESGKGGSTARSFSLN-----------DDSLSIIEHLRSVLAIAITTAFPQLS 110

Query: 228 DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNP 287
                +  +      KFGD+QCN+AMAL K  KD G  K+P D+A        +EL  + 
Sbjct: 111 HTPVLLTPSI-----KFGDYQCNNAMALAKKLKDIGIGKSPRDVA--------TELINSC 157

Query: 288 SLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAK 347
            ++  I K+EVA PGF+N+FL++ Y    I D++ NGV+PP + KK RVLVDFSSPNIAK
Sbjct: 158 PVSPRIGKLEVAGPGFINIFLNKDYGVRAITDLLRNGVKPPKVPKK-RVLVDFSSPNIAK 216

Query: 348 EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 407
           +MHVGHLRSTIIG++I RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP++L +SPP
Sbjct: 217 QMHVGHLRSTIIGESICRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNFLNESPP 276

Query: 408 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 467
           I DLQAFYKESKKRFDEDE+FKKRAY  VVALQ  DP+  KAW++ICDVSR++F+ IYDR
Sbjct: 277 IGDLQAFYKESKKRFDEDEVFKKRAYNAVVALQGGDPNSIKAWQLICDVSRKEFKTIYDR 336

Query: 468 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-GEDRGSIPMTIVKSDGGFT 526
           L + + ERGESFYQ  M  +V +L K+ +LE+DDGR+IMW  E +  IP+TIVKSDGGFT
Sbjct: 337 LEINVKERGESFYQSRMLTVVDFLRKQNMLEVDDGREIMWPDESKTGIPLTIVKSDGGFT 396

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRL 586
           YDTSD+AAIR RIEEE  DW+VYV D GQ  HF  + ++       ++        V R 
Sbjct: 397 YDTSDMAAIRHRIEEELCDWLVYVVDSGQSTHFATIFKA-------AKRCGIFQPKVHRA 449

Query: 587 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +HV     QFG+++     KF      +  +ADL
Sbjct: 450 DHV-----QFGVVLGEDGKKFKTRSGDTVKLADL 478



 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/338 (58%), Positives = 237/338 (70%), Gaps = 43/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP++L +SPPI DLQAFY
Sbjct: 225 STIIGESICRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNFLNESPPIGDLQAFY 284

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE+FKKRAY  VVALQ  DP+  KAW++ICDVSR++F+ IYDRL + + ER
Sbjct: 285 KESKKRFDEDEVFKKRAYNAVVALQGGDPNSIKAWQLICDVSRKEFKTIYDRLEINVKER 344

Query: 685 GESFYQKHMEQLVPYLEKKGNLSL----------TKKLGI-------------------- 714
           GESFYQ  M  +V +L K+  L +            K GI                    
Sbjct: 345 GESFYQSRMLTVVDFLRKQNMLEVDDGREIMWPDESKTGIPLTIVKSDGGFTYDTSDMAA 404

Query: 715 -------------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                        VYV D GQ  HF  + + AK+ GI  P   R D V FGVVLGED KK
Sbjct: 405 IRHRIEEELCDWLVYVVDSGQSTHFATIFKAAKRCGIFQPKVHRADHVQFGVVLGEDGKK 464

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSGDTVKL++LLDEG++RSL++L+ + R   LTP EL +AQ+AVAYGCIKY DL HN
Sbjct: 465 FKTRSGDTVKLADLLDEGMKRSLEQLRSRGRDQVLTPQELLDAQEAVAYGCIKYTDLCHN 524

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           R  DYVFSFDKMLDDRGNTAVYLLY YTRI SIAR +G
Sbjct: 525 RISDYVFSFDKMLDDRGNTAVYLLYTYTRICSIARNSG 562



 Score =  205 bits (521), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 123/158 (77%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++RSL++L+ + R   LTP EL +AQ+AVAYGCIKY DL HNR  DYVFSFDKMLDDRG
Sbjct: 482  GMKRSLEQLRSRGRDQVLTPQELLDAQEAVAYGCIKYTDLCHNRISDYVFSFDKMLDDRG 541

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLY YTRI SIAR +G +  +L    ++  ++L H+KE+ L  TLL+++DVL+  
Sbjct: 542  NTAVYLLYTYTRICSIARNSGEDFSNLSKILETIDITLTHDKEWKLVSTLLKLHDVLVKC 601

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKI 1086
            +RDL LH LCE+ Y++ TAF+EFYD+CYCIEK+  G+I
Sbjct: 602  SRDLFLHFLCEFCYEVCTAFAEFYDSCYCIEKNKAGQI 639



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 89/146 (60%), Gaps = 14/146 (9%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           D +S+ ++L  V   A+  AFP+L      +  +      KFGD+QCN+AMAL K  KD 
Sbjct: 86  DSLSIIEHLRSVLAIAITTAFPQLSHTPVLLTPSI-----KFGDYQCNNAMALAKKLKDI 140

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
           G  K+P D+A        +EL  +  ++  I K+E A PGF+N+FL++ Y    + D++ 
Sbjct: 141 GIGKSPRDVA--------TELINSCPVSPRIGKLEVAGPGFINIFLNKDYGVRAITDLLR 192

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIARK 152
           NGV+PP + KK RVLVDFSSPNIA++
Sbjct: 193 NGVKPPKVPKK-RVLVDFSSPNIAKQ 217


>gi|90077474|dbj|BAE88417.1| unnamed protein product [Macaca fascicularis]
          Length = 660

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/432 (52%), Positives = 301/432 (69%), Gaps = 24/432 (5%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P + +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPAVGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESVSRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSRR+F KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRREFNKIYDALDVSLIERGESFYQDRMNDIVQE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLSEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDSGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFKTR 455

Query: 611 LTKSPPIADLQA 622
             ++  + DL  
Sbjct: 456 AGETVRLMDLMG 467



 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/340 (59%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESVSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSRR+F KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRREFNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVQEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLSEEKADMIIYVVDSGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TR+G+TV+L +L+ EGL+RS+DKLK+K R   LT  EL+ AQ ++AY CIKYADLSHNR 
Sbjct: 454 TRAGETVRLMDLMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYDCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  235 bits (600), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/196 (58%), Positives = 147/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AY CIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYDCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P + +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPAVGENKKVIVDFSSPNIAKE 206


>gi|90076908|dbj|BAE88134.1| unnamed protein product [Macaca fascicularis]
          Length = 660

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/432 (52%), Positives = 301/432 (69%), Gaps = 24/432 (5%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P + +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPAVGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIERGESFYQDRMNDIVQE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLSEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDSGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFKTR 455

Query: 611 LTKSPPIADLQA 622
             ++  + DL  
Sbjct: 456 AGETVRLMDLMG 467



 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 240/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVQEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLSEEKADMIIYVVDSGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TR+G+TV+L +L+ EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR 
Sbjct: 454 TRAGETVRLMDLMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P + +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPAVGENKKVIVDFSSPNIAKE 206


>gi|395505046|ref|XP_003756857.1| PREDICTED: arginine--tRNA ligase, cytoplasmic [Sarcophilus
           harrisii]
          Length = 661

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/441 (52%), Positives = 308/441 (69%), Gaps = 28/441 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P    +++   L ++F +A++VA+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNRPTKSMININSRLQELFAYAIKVAYPDLENPPLIVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCK-IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLS 309
            AM L K + K K EK NP DIA++IA      L  N    + I+K E+A PGF+NV L 
Sbjct: 117 SAMGLTKMLLKIKEEKINPRDIAENIAR----HLPDN----EYIEKYEIAGPGFINVHLR 168

Query: 310 RVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEY 369
           + +  +Q+  +++NGVQPP L ++ +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+
Sbjct: 169 KDFVSKQLTKLLINGVQPPALGERKKVVVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEF 228

Query: 370 LGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFK 429
           +G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FK
Sbjct: 229 VGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFK 288

Query: 430 KRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVP 489
           KRAYQCVV LQ   PD  KAW +ICDVSR++F+KIYD L+++L ERGESFYQ  M  +V 
Sbjct: 289 KRAYQCVVQLQSKTPDITKAWNLICDVSRQEFKKIYDALDISLIERGESFYQDRMTDIVR 348

Query: 490 YLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
             E+KG +++DDGRKI++  +  SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+Y
Sbjct: 349 EFEEKGFVQVDDGRKIVFVPE-CSIPLTIVKSDGGYTYDTSDLAAIKQRLMEEKADMIIY 407

Query: 550 VTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPD 609
           V D GQ +HF+     TI     ++++ +    V R++H G     FG+++   + KF  
Sbjct: 408 VVDSGQALHFQ-----TIFA--AAQMIGWYDPKVTRVSHAG-----FGVVLGEDKKKFK- 454

Query: 610 YLTKSPPIADLQAFYKESKKR 630
             T+S     L    +E  KR
Sbjct: 455 --TRSGDTVRLIDLLEEGLKR 473



 Score =  401 bits (1030), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 241/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E++G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 215 STIIGESMSRLFEFVGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 274

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ   PD  KAW +ICDVSR++F+KIYD L+++L ER
Sbjct: 275 KESKKRFDTEEEFKKRAYQCVVQLQSKTPDITKAWNLICDVSRQEFKKIYDALDISLIER 334

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E+KG                   L++ K  G             
Sbjct: 335 GESFYQDRMTDIVREFEEKGFVQVDDGRKIVFVPECSIPLTIVKSDGGYTYDTSDLAAIK 394

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 395 QRLMEEKADMIIYVVDSGQALHFQTIFAAAQMIGWYDPKVTRVSHAGFGVVLGEDKKKFK 454

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VA+GCI+YADLSHNR 
Sbjct: 455 TRSGDTVRLIDLLEEGLKRSMDKLKEKERDKVLTLEELKAAQTSVAFGCIRYADLSHNRM 514

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 515 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 554



 Score =  235 bits (599), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 146/192 (76%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VA+GCI+YADLSHNR  DY+FSFDKMLDDRG
Sbjct: 470  GLKRSMDKLKEKERDKVLTLEELKAAQTSVAFGCIRYADLSHNRMNDYIFSFDKMLDDRG 529

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 530  NTAAYLLYAFTRIRSIARLANIDEEMLQKAAKETKIILDHEKEWKLGRCILRFPEILQKI 589

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+YLY+++T F+EFYD+CYC+EKD + G+I  V+  R+LL EATA VM K 
Sbjct: 590  LDDLFLHTLCDYLYELATTFTEFYDSCYCVEKDRQTGEIVKVNMWRMLLCEATAAVMAKG 649

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 650  FDILGIKPVQRM 661



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 96/152 (63%), Gaps = 12/152 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P +  +++   L ++F +A++VA+P+L +    V  + +    KFGD+QCN AM L K
Sbjct: 67  NRPTKSMININSRLQELFAYAIKVAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGLTK 123

Query: 62  -IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQ 120
            + K K EK NP DIA++IA      L  N    + I+K E A PGF+NV L + +  +Q
Sbjct: 124 MLLKIKEEKINPRDIAENIAR----HLPDN----EYIEKYEIAGPGFINVHLRKDFVSKQ 175

Query: 121 MKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           +  +++NGVQPP L ++ +V+VDFSSPNIA++
Sbjct: 176 LTKLLINGVQPPALGERKKVVVDFSSPNIAKE 207


>gi|386781525|ref|NP_001248147.1| arginine--tRNA ligase, cytoplasmic [Macaca mulatta]
 gi|355750404|gb|EHH54742.1| hypothetical protein EGM_15636 [Macaca fascicularis]
 gi|380815268|gb|AFE79508.1| arginyl-tRNA synthetase, cytoplasmic [Macaca mulatta]
 gi|383414153|gb|AFH30290.1| arginyl-tRNA synthetase, cytoplasmic [Macaca mulatta]
          Length = 660

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/432 (52%), Positives = 301/432 (69%), Gaps = 24/432 (5%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P + +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPAVGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESVSRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIERGESFYQDRMNDIVQE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLSEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDSGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFKTR 455

Query: 611 LTKSPPIADLQA 622
             ++  + DL  
Sbjct: 456 AGETVRLMDLMG 467



 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/340 (59%), Positives = 240/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESVSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVQEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLSEEKADMIIYVVDSGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TR+G+TV+L +L+ EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR 
Sbjct: 454 TRAGETVRLMDLMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P + +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPAVGENKKVIVDFSSPNIAKE 206


>gi|586063|sp|P37880.1|SYRC_CRIGR RecName: Full=Arginine--tRNA ligase, cytoplasmic; AltName:
           Full=Arginyl-tRNA synthetase; Short=ArgRS
 gi|478315|pir||JN0870 arginine-tRNA ligase (EC 6.1.1.19) - Chinese hamster
 gi|433544|emb|CAA45012.1| arginine--tRNA ligase [Cricetulus longicaudatus]
          Length = 661

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/427 (53%), Positives = 302/427 (70%), Gaps = 24/427 (5%)

Query: 194 AKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAM 253
           A+K   P  + +++   L DVF  A++ A+P+L +    V  + +    KFGD+QCN AM
Sbjct: 64  AEKRRRPTKNMININSRLQDVFGCAIKAAYPDLDNPPLVVTPSQQP---KFGDYQCNSAM 120

Query: 254 ALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYA 313
            + ++ K K +K NP  IA++I    T  L  N    + ID++E+A PGF+NV L + + 
Sbjct: 121 GISQMLKAKEQKVNPRGIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFV 172

Query: 314 GEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHD 373
            EQ+ +++VNG+Q P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+D
Sbjct: 173 SEQLTNLLVNGIQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYD 232

Query: 374 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAY 433
           V+RLNHVGDWGTQFGMLIAHLQD+FPDYLT SPPI DLQAFYKESKKRFD +E FKKRAY
Sbjct: 233 VLRLNHVGDWGTQFGMLIAHLQDQFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAY 292

Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 493
           QCVV+LQ  DPD+ KAW +ICDVSR +F KIYD L++TL ERGESFYQ  M+ +V   E 
Sbjct: 293 QCVVSLQSKDPDFIKAWNLICDVSRAEFNKIYDALDITLIERGESFYQDRMKDIVKEFED 352

Query: 494 KGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
           KG +++DDGRKI++     SIP+TIVKSDGGFTYDTSDLAAI+QR+ EEKA+ I+YV D 
Sbjct: 353 KGYVQVDDGRKIVFVPG-CSIPLTIVKSDGGFTYDTSDLAAIKQRLFEEKANKIIYVVDN 411

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 613
           GQ VHF+     TI     ++++ +    V ++ HVG     FG+++   + KF     +
Sbjct: 412 GQAVHFQ-----TIFA--AAQMIGWYDPKVTQVTHVG-----FGVVLGEDKKKFKTRSGE 459

Query: 614 SPPIADL 620
           +  + DL
Sbjct: 460 TVRLVDL 466



 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 242/340 (71%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQD+FPDYLT SPPI DLQAFY
Sbjct: 215 STIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDQFPDYLTVSPPIGDLQAFY 274

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV+LQ  DPD+ KAW +ICDVSR +F KIYD L++TL ER
Sbjct: 275 KESKKRFDTEEEFKKRAYQCVVSLQSKDPDFIKAWNLICDVSRAEFNKIYDALDITLIER 334

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 335 GESFYQDRMKDIVKEFEDKGYVQVDDGRKIVFVPGCSIPLTIVKSDGGFTYDTSDLAAIK 394

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  T++  VGFGVVLGED+KKFK
Sbjct: 395 QRLFEEKANKIIYVVDNGQAVHFQTIFAAAQMIGWYDPKVTQVTHVGFGVVLGEDKKKFK 454

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR 
Sbjct: 455 TRSGETVRLVDLLGEGLKRSMDKLKEKERDKVLTEEELTAAQTSIAYGCIKYADLSHNRL 514

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A ++ E
Sbjct: 515 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANVDEE 554



 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 466  LLGEGLKRSMDKLKEKERDKVLTEEELTAAQTSIAYGCIKYADLSHNRLNDYIFSFDKML 525

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A ++ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 526  DDRGNTAAYLLYAFTRIRSIARLANVDEEMLQKAARETKIVLDHEKEWKLGRCILRFPEI 585

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A V
Sbjct: 586  LQKMLDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAV 645

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 646  MAKGFDILGIKPVQRM 661



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 93/149 (62%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L DVF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 70  PTKNMININSRLQDVFGCAIKAAYPDLDNPPLVVTPSQQP---KFGDYQCNSAMGISQML 126

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K NP  IA++I    T  L  N    + ID++E A PGF+NV L + +  EQ+ +
Sbjct: 127 KAKEQKVNPRGIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFVSEQLTN 178

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNG+Q P L +  +V+VDFSSPNIA++
Sbjct: 179 LLVNGIQLPALGENKKVIVDFSSPNIAKE 207


>gi|355691828|gb|EHH27013.1| hypothetical protein EGK_17110 [Macaca mulatta]
          Length = 660

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/432 (52%), Positives = 301/432 (69%), Gaps = 24/432 (5%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P + +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPAVGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESVSRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIERGESFYQDRMNDIVQE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFIPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLSEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDSGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFKTR 455

Query: 611 LTKSPPIADLQA 622
             ++  + DL  
Sbjct: 456 AGETVRLMDLMG 467



 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/340 (59%), Positives = 240/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESVSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVQEFEDRGFVQVDDGRKIVFIPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLSEEKADMIIYVVDSGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TR+G+TV+L +L+ EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR 
Sbjct: 454 TRAGETVRLMDLMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P + +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPAVGENKKVIVDFSSPNIAKE 206


>gi|402873343|ref|XP_003900538.1| PREDICTED: arginine--tRNA ligase, cytoplasmic [Papio anubis]
          Length = 660

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/432 (52%), Positives = 300/432 (69%), Gaps = 24/432 (5%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+++E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEQVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P + +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPAVGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIERGESFYQDRMNDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLSEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     + ++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDSGQSVHFQ-----TIFA--AAHMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFKTR 455

Query: 611 LTKSPPIADLQA 622
             ++  + DL  
Sbjct: 456 AGETVRLMDLMG 467



 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A   G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLSEEKADMIIYVVDSGQSVHFQTIFAAAHMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TR+G+TV+L +L+ EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR 
Sbjct: 454 TRAGETVRLMDLMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+++E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEQVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P + +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPAVGENKKVIVDFSSPNIAKE 206


>gi|354468259|ref|XP_003496584.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Cricetulus
           griseus]
          Length = 648

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/427 (53%), Positives = 302/427 (70%), Gaps = 24/427 (5%)

Query: 194 AKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAM 253
           A+K   P  + +++   L DVF  A++ A+P+L +    V  + +    KFGD+QCN AM
Sbjct: 51  AEKRRRPTKNLININSRLQDVFGCAIKAAYPDLDNPPLVVTPSQQP---KFGDYQCNSAM 107

Query: 254 ALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYA 313
            + ++ K K +K NP  IA++I    T  L  N    + ID++E+A PGF+NV L + + 
Sbjct: 108 GISQMLKAKEQKVNPRGIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFV 159

Query: 314 GEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHD 373
            EQ+ +++VNG+Q P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+D
Sbjct: 160 SEQLTNLLVNGIQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYD 219

Query: 374 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAY 433
           V+RLNHVGDWGTQFGMLIAHLQD+FPDYLT SPPI DLQAFYKESKKRFD +E FKKRAY
Sbjct: 220 VLRLNHVGDWGTQFGMLIAHLQDQFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAY 279

Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 493
           QCVV+LQ  DPD+ KAW +ICDVSR +F KIYD L++TL ERGESFYQ  M+ +V   E 
Sbjct: 280 QCVVSLQSKDPDFIKAWNLICDVSRAEFNKIYDALDITLIERGESFYQDRMKDIVKEFED 339

Query: 494 KGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
           KG +++DDGRKI++     SIP+TIVKSDGGFTYDTSDLAAI+QR+ EEKA+ I+YV D 
Sbjct: 340 KGYVQVDDGRKIVFVPG-CSIPLTIVKSDGGFTYDTSDLAAIKQRLFEEKANKIIYVVDN 398

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 613
           GQ VHF+     TI     ++++ +    V ++ HVG     FG+++   + KF     +
Sbjct: 399 GQAVHFQ-----TIFA--AAQMIGWYDPKVTQVTHVG-----FGVVLGEDKKKFKTRSGE 446

Query: 614 SPPIADL 620
           +  + DL
Sbjct: 447 TVRLVDL 453



 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 242/340 (71%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQD+FPDYLT SPPI DLQAFY
Sbjct: 202 STIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDQFPDYLTVSPPIGDLQAFY 261

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV+LQ  DPD+ KAW +ICDVSR +F KIYD L++TL ER
Sbjct: 262 KESKKRFDTEEEFKKRAYQCVVSLQSKDPDFIKAWNLICDVSRAEFNKIYDALDITLIER 321

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 322 GESFYQDRMKDIVKEFEDKGYVQVDDGRKIVFVPGCSIPLTIVKSDGGFTYDTSDLAAIK 381

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  T++  VGFGVVLGED+KKFK
Sbjct: 382 QRLFEEKANKIIYVVDNGQAVHFQTIFAAAQMIGWYDPKVTQVTHVGFGVVLGEDKKKFK 441

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR 
Sbjct: 442 TRSGETVRLVDLLGEGLKRSMDKLKEKERDKVLTEEELTAAQTSIAYGCIKYADLSHNRL 501

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A ++ E
Sbjct: 502 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANVDEE 541



 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 453  LLGEGLKRSMDKLKEKERDKVLTEEELTAAQTSIAYGCIKYADLSHNRLNDYIFSFDKML 512

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A ++ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 513  DDRGNTAAYLLYAFTRIRSIARLANVDEEMLQKAARETKIVLDHEKEWKLGRCILRFPEI 572

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A V
Sbjct: 573  LQKMLDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAV 632

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 633  MAKGFDILGIKPVQRM 648



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 93/149 (62%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L DVF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 57  PTKNLININSRLQDVFGCAIKAAYPDLDNPPLVVTPSQQP---KFGDYQCNSAMGISQML 113

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K NP  IA++I    T  L  N    + ID++E A PGF+NV L + +  EQ+ +
Sbjct: 114 KAKEQKVNPRGIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFVSEQLTN 165

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNG+Q P L +  +V+VDFSSPNIA++
Sbjct: 166 LLVNGIQLPALGENKKVIVDFSSPNIAKE 194


>gi|410914836|ref|XP_003970893.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Takifugu
           rubripes]
          Length = 660

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/426 (52%), Positives = 297/426 (69%), Gaps = 27/426 (6%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++   L ++F  A++ ++PEL +   ++A   +    KFGD+QCN AMA+ ++ K KG 
Sbjct: 74  LNISQRLQEIFGLAIRTSYPELENPPLALAPNQQP---KFGDYQCNSAMAMAQMLKAKGM 130

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K NP +IA+ I       L  N    ++I K E+A PGF+N+ L R +  + +  +++ G
Sbjct: 131 KANPREIAERI----IRNLPDN----ELIQKTEIAGPGFINIHLKRAFVSKLLSKLLIKG 182

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           V PP L  + RV+VDFSSPNIAKEMHVGHLRSTIIGD++SRL E+LGHDV+RLNHVGDWG
Sbjct: 183 VTPPPLTSRKRVVVDFSSPNIAKEMHVGHLRSTIIGDSMSRLFEFLGHDVLRLNHVGDWG 242

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHLQDKFPDYLT SPPI+DLQ FYKESKKRFDED+ FKKRAYQCVV LQ  +P
Sbjct: 243 TQFGMLIAHLQDKFPDYLTVSPPISDLQGFYKESKKRFDEDDGFKKRAYQCVVKLQSKEP 302

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           D+ KAW +ICDVSR++FQKIYD L++ L ERGES+YQ  M Q+V   E +G  +LD+GRK
Sbjct: 303 DFIKAWNLICDVSRQEFQKIYDCLDIKLIERGESYYQDLMTQVVKEAEDRGFAQLDEGRK 362

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           I++   + S+P+TIVKSDGG+TYDTSDLAAI QR+ EEKAD I+YVTD GQ  HF+++  
Sbjct: 363 IIFAPGQ-SLPLTIVKSDGGYTYDTSDLAAIHQRLFEEKADIIIYVTDSGQSSHFQVVFA 421

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +       +++L +    V R+ H G     FG+++   + KF    T+S     L    
Sbjct: 422 A-------AQMLGWYDPKVTRVEHAG-----FGVVLGEDKKKFK---TRSGDTVRLMDLL 466

Query: 625 KESKKR 630
            E  KR
Sbjct: 467 GEGLKR 472



 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/338 (61%), Positives = 246/338 (72%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++SRL E+LGHDV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI+DLQ FY
Sbjct: 214 STIIGDSMSRLFEFLGHDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPISDLQGFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDED+ FKKRAYQCVV LQ  +PD+ KAW +ICDVSR++FQKIYD L++ L ER
Sbjct: 274 KESKKRFDEDDGFKKRAYQCVVKLQSKEPDFIKAWNLICDVSRQEFQKIYDCLDIKLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GES+YQ  M Q+V   E +G                   L++ K  G             
Sbjct: 334 GESYYQDLMTQVVKEAEDRGFAQLDEGRKIIFAPGQSLPLTIVKSDGGYTYDTSDLAAIH 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YVTD GQ  HF+++   A+  G  +P  TR++  GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADIIIYVTDSGQSSHFQVVFAAAQMLGWYDPKVTRVEHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL EGL+RS+DKLK+K R   L+P EL +AQ+AVA+GCIKYADLSHNR 
Sbjct: 454 TRSGDTVRLMDLLGEGLKRSMDKLKEKERDKVLSPDELVKAQRAVAFGCIKYADLSHNRI 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DYVFSFDKMLDDRGNTA YLLYA+TRI SIAR A IN
Sbjct: 514 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIN 551



 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 149/196 (76%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   L+P EL +AQ+AVA+GCIKYADLSHNR  DYVFSFDKML
Sbjct: 465  LLGEGLKRSMDKLKEKERDKVLSPDELVKAQRAVAFGCIKYADLSHNRINDYVFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A IN   LR  A+ST + L+HEKE+ L K +LR  +V
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANINEATLRKEAESTEILLDHEKEWKLGKCILRFPEV 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + G++  V+  R+LL +ATA +
Sbjct: 585  LQKIQDDLLLHSLCDYVYELATTFTEFYDSCYCVEKDRQTGEVVKVNMWRMLLCDATAAI 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M +CF IL +  V +M
Sbjct: 645  MAQCFHILGLNPVERM 660



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +++   L ++F  A++ ++PEL +   ++A   +    KFGD+QCN AMA+ ++ K KG 
Sbjct: 74  LNISQRLQEIFGLAIRTSYPELENPPLALAPNQQP---KFGDYQCNSAMAMAQMLKAKGM 130

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K NP +IA+ I       L  N    ++I K E A PGF+N+ L R +  + +  +++ G
Sbjct: 131 KANPREIAERI----IRNLPDN----ELIQKTEIAGPGFINIHLKRAFVSKLLSKLLIKG 182

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           V PP L  + RV+VDFSSPNIA++
Sbjct: 183 VTPPPLTSRKRVVVDFSSPNIAKE 206


>gi|403290213|ref|XP_003936222.1| PREDICTED: arginine--tRNA ligase, cytoplasmic [Saimiri boliviensis
           boliviensis]
          Length = 660

 Score =  444 bits (1143), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/440 (52%), Positives = 304/440 (69%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMININSRLQEVFGHAIKAAYPDLENPPLIVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K N  +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNTREIAENI----TKHLPDN----EYIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+ +++VNGV+ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG++I RL E+ 
Sbjct: 169 DFVSEQLTNLLVNGVKLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESICRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW +ICDVSR++F KIYD L+VTL ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDIIKAWNLICDVSRQEFNKIYDALDVTLIERGESFYQDRMNDVVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           LE +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 LEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+ +  +       ++++ +    V R++H G     FG+++   + KF   
Sbjct: 408 VDSGQSVHFQTVFAA-------AQMIGWYDPKVTRVSHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L    +E  KR
Sbjct: 454 -TRSGETVRLMDLLEEGLKR 472



 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/340 (60%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I RL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESICRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW +ICDVSR++F KIYD L+VTL ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDIIKAWNLICDVSRQEFNKIYDALDVTLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V  LE +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDVVKELEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDSGQSVHFQTVFAAAQMIGWYDPKVTRVSHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLEEGLKRSMDKLKEKQRDKVLTAEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  236 bits (602), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 145/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKQRDKVLTAEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQEVFGHAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K N  +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNTREIAENI----TKHLPDN----EYIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            +++VNGV+ P L +  +V+VDFSSPNIA++
Sbjct: 176 TNLLVNGVKLPALGENKKVVVDFSSPNIAKE 206


>gi|41053407|ref|NP_956342.1| arginine--tRNA ligase, cytoplasmic [Danio rerio]
 gi|28277820|gb|AAH45884.1| Arginyl-tRNA synthetase [Danio rerio]
          Length = 661

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/440 (50%), Positives = 307/440 (69%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           +   ++MN      +++   L  +F  A+  A+P+L +   SV  + +    KFGD+QCN
Sbjct: 61  RSLQEEMNHNGKTMLNINQLLQQIFGEAISSAYPDLENPPLSVTPSQQA---KFGDYQCN 117

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AMA+ ++ K KG K +P +IA+ I   + +          +I+K E+A PGF+NV L R
Sbjct: 118 SAMAMSQMMKAKGLKVSPREIAEKIVQNIPNN--------DLIEKTEIAGPGFINVHLKR 169

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  + + +++VNGVQPP L KK +V+VDFSSPNIAKEMHVGHLRSTIIGD++ RL E+L
Sbjct: 170 NFVSKLLSNVLVNGVQPPPLQKKKKVIVDFSSPNIAKEMHVGHLRSTIIGDSMCRLFEFL 229

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G++V+RLNHVGDWGTQFGMLIAHLQDKFP+YL+ SPPI DLQAFYKESKKRFDEDE FKK
Sbjct: 230 GYEVLRLNHVGDWGTQFGMLIAHLQDKFPNYLSVSPPIGDLQAFYKESKKRFDEDEEFKK 289

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAY+CVV LQ  + D+ KAW +ICDVSR++FQK+Y+ L++++ ERGES+YQ  M  +V  
Sbjct: 290 RAYKCVVKLQSKEADFIKAWNLICDVSRKEFQKVYNCLDISIKERGESYYQDMMTAVVKE 349

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E+KGL+E+D+GRKI++   + SIP+TIVKSDGG+TYDTSDLAAIR R+ +EKAD I+YV
Sbjct: 350 FEEKGLVEVDEGRKIVFAPGQ-SIPLTIVKSDGGYTYDTSDLAAIRNRLFDEKADIIIYV 408

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
           TD GQ +HF+++  +       ++L+ +    V R+ H G     FG+++   + KF   
Sbjct: 409 TDSGQAMHFQVIFAA-------AQLIGWYDPKVTRVEHAG-----FGVVLGEDKKKFK-- 454

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L    +E  KR
Sbjct: 455 -TRSGDTVRLMDLLEEGLKR 473



 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/337 (59%), Positives = 246/337 (72%), Gaps = 41/337 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ RL E+LG++V+RLNHVGDWGTQFGMLIAHLQDKFP+YL+ SPPI DLQAFY
Sbjct: 215 STIIGDSMCRLFEFLGYEVLRLNHVGDWGTQFGMLIAHLQDKFPNYLSVSPPIGDLQAFY 274

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY+CVV LQ  + D+ KAW +ICDVSR++FQK+Y+ L++++ ER
Sbjct: 275 KESKKRFDEDEEFKKRAYKCVVKLQSKEADFIKAWNLICDVSRKEFQKVYNCLDISIKER 334

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GES+YQ  M  +V   E+KG                   L++ K  G             
Sbjct: 335 GESYYQDMMTAVVKEFEEKGLVEVDEGRKIVFAPGQSIPLTIVKSDGGYTYDTSDLAAIR 394

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YVTD GQ +HF+++   A+  G  +P  TR++  GFGVVLGED+KKFK
Sbjct: 395 NRLFDEKADIIIYVTDSGQAMHFQVIFAAAQLIGWYDPKVTRVEHAGFGVVLGEDKKKFK 454

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+RS+DKLK+K R   LTP EL +AQ+AVA+GCIKYADLSHNR 
Sbjct: 455 TRSGDTVRLMDLLEEGLKRSMDKLKEKERDKVLTPEELEKAQRAVAFGCIKYADLSHNRI 514

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            DYVFSFDKMLDDRGNTA YLLYA+TRI SIAR A I
Sbjct: 515 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANI 551



 Score =  246 bits (627), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 148/192 (77%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LTP EL +AQ+AVA+GCIKYADLSHNR  DYVFSFDKMLDDRG
Sbjct: 470  GLKRSMDKLKEKERDKVLTPEELEKAQRAVAFGCIKYADLSHNRINDYVFSFDKMLDDRG 529

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I    LR AA++T V L+HEKE+ L K +LR  ++L  +
Sbjct: 530  NTAAYLLYAFTRIRSIARLANIQEAALRKAAETTDVILDHEKEWKLGKCILRFPEILQKI 589

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
            T DL LH LC+YLY+++T F+EFYD+CYC+EKD + G++  V+  R+LL EATA VM K 
Sbjct: 590  TDDLLLHTLCDYLYELATTFTEFYDSCYCVEKDRQTGEVVKVNMWRMLLCEATAAVMAKG 649

Query: 1108 FDILNIRTVHKM 1119
            FDIL I  V +M
Sbjct: 650  FDILGINPVQRM 661



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 92/152 (60%), Gaps = 11/152 (7%)

Query: 1   MNVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALC 60
           MN   +  +++   L  +F  A+  A+P+L +   SV  + +    KFGD+QCN AMA+ 
Sbjct: 67  MNHNGKTMLNINQLLQQIFGEAISSAYPDLENPPLSVTPSQQA---KFGDYQCNSAMAMS 123

Query: 61  KIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQ 120
           ++ K KG K +P +IA+ I   + +          +I+K E A PGF+NV L R +  + 
Sbjct: 124 QMMKAKGLKVSPREIAEKIVQNIPNN--------DLIEKTEIAGPGFINVHLKRNFVSKL 175

Query: 121 MKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           + +++VNGVQPP L KK +V+VDFSSPNIA++
Sbjct: 176 LSNVLVNGVQPPPLQKKKKVIVDFSSPNIAKE 207


>gi|182892034|gb|AAI65718.1| Rars protein [Danio rerio]
          Length = 661

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/440 (50%), Positives = 307/440 (69%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           +   ++MN      +++   L  +F  A+  A+P+L +   SV  + +    KFGD+QCN
Sbjct: 61  RSLQEEMNHNGKTMLNINQLLQQIFGEAISSAYPDLENPPLSVTPSQQA---KFGDYQCN 117

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AMA+ ++ K KG K +P +IA+ I   + +          +I+K E+A PGF+NV L R
Sbjct: 118 SAMAMSQMMKAKGLKVSPREIAEKIVQNIPNN--------DLIEKTEIAGPGFINVHLKR 169

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  + + +++VNGVQPP L KK +V+VDFSSPNIAKEMHVGHLRSTIIGD++ RL E+L
Sbjct: 170 NFVSKLLSNVLVNGVQPPPLQKKKKVIVDFSSPNIAKEMHVGHLRSTIIGDSMCRLFEFL 229

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G++V+RLNHVGDWGTQFGMLIAHLQDKFP+YL+ SPPI DLQAFYKESKKRFDEDE FKK
Sbjct: 230 GYEVLRLNHVGDWGTQFGMLIAHLQDKFPNYLSVSPPIGDLQAFYKESKKRFDEDEEFKK 289

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAY+CVV LQ  + D+ KAW +ICDVSR++FQK+Y+ L++++ ERGES+YQ  M  +V  
Sbjct: 290 RAYKCVVKLQSREADFIKAWNLICDVSRKEFQKVYNCLDISIKERGESYYQDMMTAVVKE 349

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E+KGL+E+D+GRKI++   + SIP+TIVKSDGG+TYDTSDLAAIR R+ +EKAD I+YV
Sbjct: 350 FEEKGLVEVDEGRKIVFAPGQ-SIPLTIVKSDGGYTYDTSDLAAIRNRLFDEKADIIIYV 408

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
           TD GQ +HF+++  +       ++L+ +    V R+ H G     FG+++   + KF   
Sbjct: 409 TDSGQAMHFQVIFAA-------AQLIGWYDPKVTRVEHAG-----FGVVLGEDKKKFK-- 454

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L    +E  KR
Sbjct: 455 -TRSGDTVRLMDLLEEGLKR 473



 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/337 (59%), Positives = 246/337 (72%), Gaps = 41/337 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ RL E+LG++V+RLNHVGDWGTQFGMLIAHLQDKFP+YL+ SPPI DLQAFY
Sbjct: 215 STIIGDSMCRLFEFLGYEVLRLNHVGDWGTQFGMLIAHLQDKFPNYLSVSPPIGDLQAFY 274

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY+CVV LQ  + D+ KAW +ICDVSR++FQK+Y+ L++++ ER
Sbjct: 275 KESKKRFDEDEEFKKRAYKCVVKLQSREADFIKAWNLICDVSRKEFQKVYNCLDISIKER 334

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GES+YQ  M  +V   E+KG                   L++ K  G             
Sbjct: 335 GESYYQDMMTAVVKEFEEKGLVEVDEGRKIVFAPGQSIPLTIVKSDGGYTYDTSDLAAIR 394

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YVTD GQ +HF+++   A+  G  +P  TR++  GFGVVLGED+KKFK
Sbjct: 395 NRLFDEKADIIIYVTDSGQAMHFQVIFAAAQLIGWYDPKVTRVEHAGFGVVLGEDKKKFK 454

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+RS+DKLK+K R   LTP EL +AQ+AVA+GCIKYADLSHNR 
Sbjct: 455 TRSGDTVRLMDLLEEGLKRSMDKLKEKERDKVLTPEELEKAQRAVAFGCIKYADLSHNRI 514

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            DYVFSFDKMLDDRGNTA YLLYA+TRI SIAR A I
Sbjct: 515 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANI 551



 Score =  246 bits (627), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 148/192 (77%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LTP EL +AQ+AVA+GCIKYADLSHNR  DYVFSFDKMLDDRG
Sbjct: 470  GLKRSMDKLKEKERDKVLTPEELEKAQRAVAFGCIKYADLSHNRINDYVFSFDKMLDDRG 529

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I    LR AA++T V L+HEKE+ L K +LR  ++L  +
Sbjct: 530  NTAAYLLYAFTRIRSIARLANIQEAALRKAAETTDVILDHEKEWKLGKCILRFPEILQKI 589

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
            T DL LH LC+YLY+++T F+EFYD+CYC+EKD + G++  V+  R+LL EATA VM K 
Sbjct: 590  TDDLLLHTLCDYLYELATTFTEFYDSCYCVEKDRQTGEVVKVNMWRMLLCEATAAVMAKG 649

Query: 1108 FDILNIRTVHKM 1119
            FDIL I  V +M
Sbjct: 650  FDILGINPVQRM 661



 Score =  116 bits (290), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 92/152 (60%), Gaps = 11/152 (7%)

Query: 1   MNVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALC 60
           MN   +  +++   L  +F  A+  A+P+L +   SV  + +    KFGD+QCN AMA+ 
Sbjct: 67  MNHNGKTMLNINQLLQQIFGEAISSAYPDLENPPLSVTPSQQA---KFGDYQCNSAMAMS 123

Query: 61  KIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQ 120
           ++ K KG K +P +IA+ I   + +          +I+K E A PGF+NV L R +  + 
Sbjct: 124 QMMKAKGLKVSPREIAEKIVQNIPNN--------DLIEKTEIAGPGFINVHLKRNFVSKL 175

Query: 121 MKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           + +++VNGVQPP L KK +V+VDFSSPNIA++
Sbjct: 176 LSNVLVNGVQPPPLQKKKKVIVDFSSPNIAKE 207


>gi|156383395|ref|XP_001632819.1| predicted protein [Nematostella vectensis]
 gi|156219881|gb|EDO40756.1| predicted protein [Nematostella vectensis]
          Length = 588

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/410 (53%), Positives = 294/410 (71%), Gaps = 24/410 (5%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           L+++F  A++VAFP + D    V ST      KFGD+QCN AM L +I K+ G+K NP  
Sbjct: 8   LNELFKQAIRVAFPAVTDPPILVQSTQND---KFGDYQCNSAMGLSQILKNNGQKANP-- 62

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTL 330
             Q+IA  + + L  N     +I+K+++A PGF+NV +++ +  + ++D++ NGV PP +
Sbjct: 63  --QAIAKSIIASLPPN----DLIEKVDIAGPGFINVHMNKKFIKDILRDVVANGVHPPAI 116

Query: 331 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 390
             + R +VDFSSPNIAKEMHVGHLRSTIIG++I RLLEY+GHDV+RLNH+GDWGTQFGML
Sbjct: 117 RSRQRCIVDFSSPNIAKEMHVGHLRSTIIGESICRLLEYVGHDVLRLNHIGDWGTQFGML 176

Query: 391 IAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAW 450
           IAHLQD+FPDYL KSPPI DLQAFYKESK  FD DE FKKRAY+ VV LQ+ +P+ +KAW
Sbjct: 177 IAHLQDEFPDYLEKSPPIEDLQAFYKESKTLFDSDEQFKKRAYERVVQLQQGEPNVRKAW 236

Query: 451 EMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED 510
           EMICDVSR++F+K+Y+RL VT+ ERGESFYQ  M QLV  LE KG + ++DGRK+++ E 
Sbjct: 237 EMICDVSRKEFEKLYERLGVTIIERGESFYQPMMPQLVELLESKGKVLVEDGRKVVFVEG 296

Query: 511 RGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGD 570
              +P+T+VKSDGG+TYDTSDLAA+RQR+E+E+ DWI+YVTD GQ  HF L+  +     
Sbjct: 297 Y-KVPLTVVKSDGGYTYDTSDLAALRQRVEDERGDWIIYVTDAGQSGHFDLVFGA----- 350

Query: 571 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
             +R          R++HVG     FG+++   + KF     ++  + DL
Sbjct: 351 --AREAGIYDPKRTRVDHVG-----FGVVLGEDRKKFKTRSGETVRLVDL 393



 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/338 (62%), Positives = 250/338 (73%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I RLLEY+GHDV+RLNH+GDWGTQFGMLIAHLQD+FPDYL KSPPI DLQAFY
Sbjct: 142 STIIGESICRLLEYVGHDVLRLNHIGDWGTQFGMLIAHLQDEFPDYLEKSPPIEDLQAFY 201

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK  FD DE FKKRAY+ VV LQ+ +P+ +KAWEMICDVSR++F+K+Y+RL VT+ ER
Sbjct: 202 KESKTLFDSDEQFKKRAYERVVQLQQGEPNVRKAWEMICDVSRKEFEKLYERLGVTIIER 261

Query: 685 GESFYQKHMEQLVPYLEKKGN------------------LSLTKKLG------------- 713
           GESFYQ  M QLV  LE KG                   L++ K  G             
Sbjct: 262 GESFYQPMMPQLVELLESKGKVLVEDGRKVVFVEGYKVPLTVVKSDGGYTYDTSDLAALR 321

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YVTD GQ  HF L+   A++AGI +P +TR+D VGFGVVLGEDRKKFK
Sbjct: 322 QRVEDERGDWIIYVTDAGQSGHFDLVFGAAREAGIYDPKRTRVDHVGFGVVLGEDRKKFK 381

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +L+DEG+RRS+DKLK+K R   L+  EL  A +AVAYGCIKYADLSHNR 
Sbjct: 382 TRSGETVRLVDLMDEGIRRSVDKLKEKGRDQALSEDELRAASEAVAYGCIKYADLSHNRV 441

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DYVFSFDKMLDD+GNTAVYLLYAYTRI SI RTAG++
Sbjct: 442 GDYVFSFDKMLDDKGNTAVYLLYAYTRIRSIMRTAGMD 479



 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 142/192 (73%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G+RRS+DKLK+K R   L+  EL  A +AVAYGCIKYADLSHNR  DYVFSFDKMLDD+G
Sbjct: 397  GIRRSVDKLKEKGRDQALSEDELRAASEAVAYGCIKYADLSHNRVGDYVFSFDKMLDDKG 456

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYAYTRI SI RTAG++   L  A  +T +SLEH KE+ L K + R   VL  +
Sbjct: 457  NTAVYLLYAYTRIRSIMRTAGMDRASLEQAIHNTEISLEHPKEWKLGKCITRFPQVLSRI 516

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL +H LCE+LY+++T  +EFYD+CYC+EKD + G I  V+  RLLL EATA++M+  
Sbjct: 517  LEDLLMHPLCEFLYELATTTTEFYDSCYCVEKDRQTGDIVKVNVDRLLLLEATARIMETG 576

Query: 1108 FDILNIRTVHKM 1119
            F IL I TV+KM
Sbjct: 577  FHILGINTVNKM 588



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 88/138 (63%), Gaps = 11/138 (7%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           L+++F  A++VAFP + D    V ST      KFGD+QCN AM L +I K+ G+K NP  
Sbjct: 8   LNELFKQAIRVAFPAVTDPPILVQSTQND---KFGDYQCNSAMGLSQILKNNGQKANP-- 62

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTL 134
             Q+IA  + + L  N     +I+K++ A PGF+NV +++ +  + ++D++ NGV PP +
Sbjct: 63  --QAIAKSIIASLPPN----DLIEKVDIAGPGFINVHMNKKFIKDILRDVVANGVHPPAI 116

Query: 135 NKKLRVLVDFSSPNIARK 152
             + R +VDFSSPNIA++
Sbjct: 117 RSRQRCIVDFSSPNIAKE 134


>gi|345490499|ref|XP_001604592.2| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Nasonia
           vitripennis]
          Length = 676

 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/380 (55%), Positives = 285/380 (75%), Gaps = 17/380 (4%)

Query: 189 QTKGTAKKMNVPVSDRM-SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDF 247
           ++K  A   N+  S  M S+ D L  +F  A+  A+P+L D    ++S+N     KFGD+
Sbjct: 71  KSKHLAVSTNMSESGHMVSIYDTLYTLFEKAIIEAYPDLTDPPVVISSSNNP---KFGDY 127

Query: 248 QCNDAMALCKIF--KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVN 305
           QCN A+ LCK+     +G+K +P +IA  I      ++A++P    +++K+EVA  GF+N
Sbjct: 128 QCNSALPLCKLLGSASQGKKVSPREIADKI----ILKVASSP----LVEKLEVAGAGFIN 179

Query: 306 VFLSRVYAGEQIKDIIVNG--VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 363
           ++L R +    + +I+ +G  + PP + K+ R+LVDFSSPN+AKEMHVGHLRSTIIGD+I
Sbjct: 180 IYLKREFGQAILANILKHGKVLSPPVVQKR-RILVDFSSPNVAKEMHVGHLRSTIIGDSI 238

Query: 364 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 423
           +RLLE+LGHDV+R+NH+GDWGTQFGMLIAHL+DKFP+Y T+SPPI+DLQ+FYKESK RFD
Sbjct: 239 ARLLEFLGHDVLRINHIGDWGTQFGMLIAHLEDKFPNYTTESPPISDLQSFYKESKVRFD 298

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKH 483
           EDE FKKRAY CVV LQ  +P Y +AW++ICDVSR++FQ IY+RL++ L ERGESFY   
Sbjct: 299 EDEEFKKRAYACVVKLQAHEPKYIQAWKLICDVSRKEFQSIYNRLDIKLIERGESFYHSR 358

Query: 484 MEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEK 543
           M+ +V  LE+K  LE D+GRKIMWGE+R  IP+TIVK DGGFTYDTSD+AAI+ RI EEK
Sbjct: 359 MKDIVKELEEKNFLEEDEGRKIMWGENREGIPLTIVKRDGGFTYDTSDMAAIKHRIVEEK 418

Query: 544 ADWIVYVTDLGQGVHFRLLE 563
           A+W++YV D GQ  HF+++E
Sbjct: 419 AEWVIYVVDAGQATHFQIME 438



 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/345 (57%), Positives = 250/345 (72%), Gaps = 43/345 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I+RLLE+LGHDV+R+NH+GDWGTQFGMLIAHL+DKFP+Y T+SPPI+DLQ+FY
Sbjct: 231 STIIGDSIARLLEFLGHDVLRINHIGDWGTQFGMLIAHLEDKFPNYTTESPPISDLQSFY 290

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFDEDE FKKRAY CVV LQ  +P Y +AW++ICDVSR++FQ IY+RL++ L ER
Sbjct: 291 KESKVRFDEDEEFKKRAYACVVKLQAHEPKYIQAWKLICDVSRKEFQSIYNRLDIKLIER 350

Query: 685 GESFYQKHMEQLVPYLEKKG-------------------NLSLTKKLG------------ 713
           GESFY   M+ +V  LE+K                     L++ K+ G            
Sbjct: 351 GESFYHSRMKDIVKELEEKNFLEEDEGRKIMWGENREGIPLTIVKRDGGFTYDTSDMAAI 410

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      ++YV D GQ  HF+++E CA++A I+      +DFVGFGVVLGED+KKF
Sbjct: 411 KHRIVEEKAEWVIYVVDAGQATHFQIMESCARRARIVLSCHN-IDFVGFGVVLGEDKKKF 469

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTVKLS+LLDEGL+R+  KL +K R   LT  E ++A++++AYGCIKYADL HNR
Sbjct: 470 KTRSGDTVKLSQLLDEGLKRAEQKLMEKERDKVLTKEEFNKAKESIAYGCIKYADLCHNR 529

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           N DYVFSFDKM +D+GNTAVYLLYA TRI SIARTA ++ E+  E
Sbjct: 530 NHDYVFSFDKMTEDKGNTAVYLLYALTRIRSIARTANVSREEMQE 574



 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/191 (58%), Positives = 149/191 (78%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R+  KL +K R   LT  E ++A++++AYGCIKYADL HNRN DYVFSFDKM +D+G
Sbjct: 486  GLKRAEQKLMEKERDKVLTKEEFNKAKESIAYGCIKYADLCHNRNHDYVFSFDKMTEDKG 545

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYA TRI SIARTA ++ E+++ A   TP+SLEHEKE+ LAK LL+  DV++ +
Sbjct: 546  NTAVYLLYALTRIRSIARTANVSREEMQEAIGKTPISLEHEKEWKLAKVLLKFPDVILKI 605

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            T+DLCLH LCE  Y+I+ AF+EFYDNCYC+EK+  G+I  V+ GR+LL E TA ++++CF
Sbjct: 606  TKDLCLHTLCELCYEIACAFTEFYDNCYCVEKNQTGEIVKVNMGRILLTEVTAMMLEQCF 665

Query: 1109 DILNIRTVHKM 1119
             +L ++ V KM
Sbjct: 666  ALLGLKPVEKM 676



 Score = 96.3 bits (238), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 92/148 (62%), Gaps = 16/148 (10%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF--KDK 66
           +S+ D L  +F  A+  A+P+L D    ++S+N     KFGD+QCN A+ LCK+     +
Sbjct: 88  VSIYDTLYTLFEKAIIEAYPDLTDPPVVISSSNNP---KFGDYQCNSALPLCKLLGSASQ 144

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
           G+K +P +IA  I      ++A++P    +++K+E A  GF+N++L R +    + +I+ 
Sbjct: 145 GKKVSPREIADKI----ILKVASSP----LVEKLEVAGAGFINIYLKREFGQAILANILK 196

Query: 127 NG--VQPPTLNKKLRVLVDFSSPNIARK 152
           +G  + PP + K+ R+LVDFSSPN+A++
Sbjct: 197 HGKVLSPPVVQKR-RILVDFSSPNVAKE 223


>gi|213514264|ref|NP_001133937.1| Arginyl-tRNA synthetase, cytoplasmic [Salmo salar]
 gi|209155884|gb|ACI34174.1| Arginyl-tRNA synthetase, cytoplasmic [Salmo salar]
          Length = 660

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/426 (51%), Positives = 299/426 (70%), Gaps = 27/426 (6%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++   L ++F  A++ A+P+L +   +V    +    KFGD+QCN AMA+ ++ K KG 
Sbjct: 74  MNINQRLQEIFGEAIREAWPDLENPPLAVTPNQQA---KFGDYQCNSAMAMAQMMKSKGL 130

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K NP +IA+ I   +           ++I+K E+A PGF+NV L R +  + + ++++NG
Sbjct: 131 KVNPREIAEKIQQNIPDN--------ELIEKTEIAGPGFINVHLKRSFVSKLLTNLLLNG 182

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           VQPP L +K +V+VDFSSPNIAKEMHVGHLRSTIIGD++ RL E+LG+DV+RLNHVGDWG
Sbjct: 183 VQPPPLERKKKVVVDFSSPNIAKEMHVGHLRSTIIGDSMCRLFEFLGYDVLRLNHVGDWG 242

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHLQDKFP+YLT SPPI DLQAFYKESKKRFDE+E FKKRAYQCVV LQ  DP
Sbjct: 243 TQFGMLIAHLQDKFPNYLTVSPPIGDLQAFYKESKKRFDEEEDFKKRAYQCVVKLQSKDP 302

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
            + K W +ICDVSR++FQK+Y+ L++ + ERGESFYQ+ M  +V   E KGL+E+D+GRK
Sbjct: 303 AFIKGWNLICDVSRKEFQKVYNCLDIQIIERGESFYQEKMIAVVKEFEAKGLVEMDEGRK 362

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           I++   +  IP+T+VKSDGG+TYDTSDLAA+RQR+ +EKAD I+YVTD GQ  HF+++  
Sbjct: 363 IVFAPGQ-QIPLTVVKSDGGYTYDTSDLAALRQRLFDEKADIIIYVTDSGQATHFQVVFA 421

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +       ++++ +    V R+ H G     FG+++   + KF    T+S     L    
Sbjct: 422 A-------AQMIGWYDPKVTRVEHAG-----FGVVLGEDKKKFK---TRSGDTVRLMDLL 466

Query: 625 KESKKR 630
            E  KR
Sbjct: 467 DEGLKR 472



 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/338 (59%), Positives = 244/338 (72%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ RL E+LG+DV+RLNHVGDWGTQFGMLIAHLQDKFP+YLT SPPI DLQAFY
Sbjct: 214 STIIGDSMCRLFEFLGYDVLRLNHVGDWGTQFGMLIAHLQDKFPNYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDE+E FKKRAYQCVV LQ  DP + K W +ICDVSR++FQK+Y+ L++ + ER
Sbjct: 274 KESKKRFDEEEDFKKRAYQCVVKLQSKDPAFIKGWNLICDVSRKEFQKVYNCLDIQIIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ+ M  +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQEKMIAVVKEFEAKGLVEMDEGRKIVFAPGQQIPLTVVKSDGGYTYDTSDLAALR 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YVTD GQ  HF+++   A+  G  +P  TR++  GFGVVLGED+KKFK
Sbjct: 394 QRLFDEKADIIIYVTDSGQATHFQVVFAAAQMIGWYDPKVTRVEHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LLDEGL+RS+DKLK+K+R   L+  EL++AQ +VA+GCIKYADLSHNR 
Sbjct: 454 TRSGDTVRLMDLLDEGLKRSMDKLKEKDRDKVLSTEELTKAQHSVAFGCIKYADLSHNRI 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DYVFSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 514 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 551



 Score =  235 bits (600), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 148/192 (77%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K+R   L+  EL++AQ +VA+GCIKYADLSHNR  DYVFSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKDRDKVLSTEELTKAQHSVAFGCIKYADLSHNRINDYVFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   LR AA++T V L+H+KE+ L K L+R  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEVALRKAAETTDVLLQHDKEWKLGKCLMRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+YLY+++T F+EFYD+CYCIEKD + G++  V+  R+LL +ATA +M K 
Sbjct: 589  LDDLLLHTLCDYLYELATTFTEFYDSCYCIEKDRQTGEVVKVNMWRMLLCDATAAIMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I  V +M
Sbjct: 649  FDILGINPVSRM 660



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 90/144 (62%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++   L ++F  A++ A+P+L +   +V    +    KFGD+QCN AMA+ ++ K KG 
Sbjct: 74  MNINQRLQEIFGEAIREAWPDLENPPLAVTPNQQA---KFGDYQCNSAMAMAQMMKSKGL 130

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K NP +IA+ I   +           ++I+K E A PGF+NV L R +  + + ++++NG
Sbjct: 131 KVNPREIAEKIQQNIPDN--------ELIEKTEIAGPGFINVHLKRSFVSKLLTNLLLNG 182

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           VQPP L +K +V+VDFSSPNIA++
Sbjct: 183 VQPPPLERKKKVVVDFSSPNIAKE 206


>gi|74212414|dbj|BAE30955.1| unnamed protein product [Mus musculus]
          Length = 660

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/431 (53%), Positives = 300/431 (69%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K +P +IA++I    T  L  N    K IDK+E+A PGF+NV L + +  EQ+  
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGVQ P L  K +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+DV+RLNH
Sbjct: 178 LLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD DE FKKRAYQCVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW +ICDVSR +F+KIYD L++TL ERGESFYQ  M+ +V   E KG +++
Sbjct: 298 QSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+YV D GQ +HF
Sbjct: 358 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHF 416

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +     TI     ++++ +    V  + HVG     FG+++   + KF    T+S     
Sbjct: 417 Q-----TIFA--AAQMIGWYDPKVTLVTHVG-----FGVVLGEDKKKFK---TRSGETVR 461

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 462 LMDLLEEGLKR 472



 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/338 (60%), Positives = 239/338 (70%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD DE FKKRAYQCVV LQ  +PD  KAW +ICDVSR +F+KIYD L++TL ER
Sbjct: 274 KESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+ +   A+  G  +P  T +  VGFGVVLGED+KKFK
Sbjct: 394 QRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLEEGLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 551



 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEAMLQRAARETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K +P +IA++I    T  L  N    K IDK+E A PGF+NV L + +  EQ+  
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGVQ P L  K +V+VDFSSPNIA++
Sbjct: 178 LLVNGVQLPVLGDKEKVIVDFSSPNIAKE 206


>gi|262118273|ref|NP_080212.2| arginine--tRNA ligase, cytoplasmic [Mus musculus]
 gi|20178137|sp|Q9D0I9.2|SYRC_MOUSE RecName: Full=Arginine--tRNA ligase, cytoplasmic; AltName:
           Full=Arginyl-tRNA synthetase; Short=ArgRS
 gi|18043638|gb|AAH20132.1| Arginyl-tRNA synthetase [Mus musculus]
 gi|26345154|dbj|BAC36226.1| unnamed protein product [Mus musculus]
 gi|74208028|dbj|BAE29127.1| unnamed protein product [Mus musculus]
 gi|148684328|gb|EDL16275.1| arginyl-tRNA synthetase [Mus musculus]
          Length = 660

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/431 (53%), Positives = 300/431 (69%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K +P +IA++I    T  L  N    K IDK+E+A PGF+NV L + +  EQ+  
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGVQ P L  K +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+DV+RLNH
Sbjct: 178 LLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD DE FKKRAYQCVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW +ICDVSR +F+KIYD L++TL ERGESFYQ  M+ +V   E KG +++
Sbjct: 298 QSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+YV D GQ +HF
Sbjct: 358 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHF 416

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +     TI     ++++ +    V  + HVG     FG+++   + KF    T+S     
Sbjct: 417 Q-----TIFA--AAQMIGWYDPKVTLVTHVG-----FGVVLGEDKKKFK---TRSGETVR 461

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 462 LMDLLEEGLKR 472



 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/338 (60%), Positives = 239/338 (70%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD DE FKKRAYQCVV LQ  +PD  KAW +ICDVSR +F+KIYD L++TL ER
Sbjct: 274 KESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+ +   A+  G  +P  T +  VGFGVVLGED+KKFK
Sbjct: 394 QRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLEEGLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 551



 Score =  233 bits (593), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEAMLQRAARETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K +P +IA++I    T  L  N    K IDK+E A PGF+NV L + +  EQ+  
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGVQ P L  K +V+VDFSSPNIA++
Sbjct: 178 LLVNGVQLPVLGDKEKVIVDFSSPNIAKE 206


>gi|53734470|gb|AAH83505.1| Arginyl-tRNA synthetase [Danio rerio]
          Length = 661

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/440 (50%), Positives = 307/440 (69%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           +   ++MN      +++   L  +F  A+  A+P+L +   +V  + +    KFGD+QCN
Sbjct: 61  RSLQEEMNHNGKTMLNINQLLQQIFGEAISSAYPDLENPPLAVTPSQQA---KFGDYQCN 117

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AMA+ ++ K KG K +P +IA+ I   + +          +I+K E+A PGF+NV L R
Sbjct: 118 SAMAMSQMMKAKGLKVSPREIAEKIVQNIPNN--------DLIEKTEIAGPGFINVHLKR 169

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  + + +++VNGVQPP L KK +V+VDFSSPNIAKEMHVGHLRSTIIGD++ RL E+L
Sbjct: 170 NFVSKLLSNVLVNGVQPPPLQKKKKVIVDFSSPNIAKEMHVGHLRSTIIGDSMCRLFEFL 229

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G++V+RLNHVGDWGTQFGMLIAHLQDKFP+YL+ SPPI DLQAFYKESKKRFDEDE FKK
Sbjct: 230 GYEVLRLNHVGDWGTQFGMLIAHLQDKFPNYLSVSPPIGDLQAFYKESKKRFDEDEEFKK 289

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAY+CVV LQ  + D+ KAW +ICDVSR++FQK+Y+ L++++ ERGES+YQ  M  +V  
Sbjct: 290 RAYKCVVKLQSKEADFIKAWNLICDVSRKEFQKVYNCLDISIKERGESYYQDMMTAVVKE 349

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E+KGL+E+D+GRKI++   + SIP+TIVKSDGG+TYDTSDLAAIR R+ +EKAD I+YV
Sbjct: 350 FEEKGLVEVDEGRKIVFAPGQ-SIPLTIVKSDGGYTYDTSDLAAIRNRLFDEKADIIIYV 408

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
           TD GQ +HF+++  +       ++L+ +    V R+ H G     FG+++   + KF   
Sbjct: 409 TDSGQAMHFQVIFAA-------AQLIGWYDPKVTRVEHAG-----FGVVLGEDKKKFK-- 454

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L    +E  KR
Sbjct: 455 -TRSGDTVRLMDLLEEGLKR 473



 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/337 (59%), Positives = 246/337 (72%), Gaps = 41/337 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ RL E+LG++V+RLNHVGDWGTQFGMLIAHLQDKFP+YL+ SPPI DLQAFY
Sbjct: 215 STIIGDSMCRLFEFLGYEVLRLNHVGDWGTQFGMLIAHLQDKFPNYLSVSPPIGDLQAFY 274

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY+CVV LQ  + D+ KAW +ICDVSR++FQK+Y+ L++++ ER
Sbjct: 275 KESKKRFDEDEEFKKRAYKCVVKLQSKEADFIKAWNLICDVSRKEFQKVYNCLDISIKER 334

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GES+YQ  M  +V   E+KG                   L++ K  G             
Sbjct: 335 GESYYQDMMTAVVKEFEEKGLVEVDEGRKIVFAPGQSIPLTIVKSDGGYTYDTSDLAAIR 394

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YVTD GQ +HF+++   A+  G  +P  TR++  GFGVVLGED+KKFK
Sbjct: 395 NRLFDEKADIIIYVTDSGQAMHFQVIFAAAQLIGWYDPKVTRVEHAGFGVVLGEDKKKFK 454

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+RS+DKLK+K R   LTP EL +AQQAVA+GCIKYADLSHNR 
Sbjct: 455 TRSGDTVRLMDLLEEGLKRSMDKLKEKERDKVLTPEELEKAQQAVAFGCIKYADLSHNRI 514

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            DYVFSFDKMLDDRGNTA YLLYA+TRI SIAR A I
Sbjct: 515 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANI 551



 Score =  248 bits (632), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 148/192 (77%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LTP EL +AQQAVA+GCIKYADLSHNR  DYVFSFDKMLDDRG
Sbjct: 470  GLKRSMDKLKEKERDKVLTPEELEKAQQAVAFGCIKYADLSHNRINDYVFSFDKMLDDRG 529

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I    LR AA++T V L+HEKE+ L K +LR  ++L  +
Sbjct: 530  NTAAYLLYAFTRIRSIARLANIQEAALRKAAETTDVILDHEKEWKLGKCILRFPEILQKI 589

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
            T DL LH LC+YLY+++T F+EFYD+CYC+EKD + G++  V+  R+LL EATA VM K 
Sbjct: 590  TDDLLLHTLCDYLYELATTFTEFYDSCYCVEKDRQTGEVVKVNMWRMLLCEATAAVMAKG 649

Query: 1108 FDILNIRTVHKM 1119
            FDIL I  V +M
Sbjct: 650  FDILGINPVQRM 661



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 92/152 (60%), Gaps = 11/152 (7%)

Query: 1   MNVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALC 60
           MN   +  +++   L  +F  A+  A+P+L +   +V  + +    KFGD+QCN AMA+ 
Sbjct: 67  MNHNGKTMLNINQLLQQIFGEAISSAYPDLENPPLAVTPSQQA---KFGDYQCNSAMAMS 123

Query: 61  KIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQ 120
           ++ K KG K +P +IA+ I   + +          +I+K E A PGF+NV L R +  + 
Sbjct: 124 QMMKAKGLKVSPREIAEKIVQNIPNN--------DLIEKTEIAGPGFINVHLKRNFVSKL 175

Query: 121 MKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           + +++VNGVQPP L KK +V+VDFSSPNIA++
Sbjct: 176 LSNVLVNGVQPPPLQKKKKVIVDFSSPNIAKE 207


>gi|74141610|dbj|BAE38569.1| unnamed protein product [Mus musculus]
          Length = 660

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/431 (52%), Positives = 300/431 (69%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K +P +IA++I    T  L  N    K IDK+E+A PGF+NV L + +  EQ+  
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGVQ P L  K +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+DV+RLNH
Sbjct: 178 LLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAH+QDKFPDYLT SPPI DLQAFYKESKKRFD DE FKKRAYQCVV L
Sbjct: 238 VGDWGTQFGMLIAHMQDKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW +ICDVSR +F+KIYD L++TL ERGESFYQ  M+ +V   E KG +++
Sbjct: 298 QSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+YV D GQ +HF
Sbjct: 358 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHF 416

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +     TI     ++++ +    V  + HVG     FG+++   + KF    T+S     
Sbjct: 417 Q-----TIFA--AAQMIGWYDPKVTLVTHVG-----FGVVLGEDKKKFK---TRSGETVR 461

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 462 LMDLLEEGLKR 472



 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/338 (60%), Positives = 239/338 (70%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAH+QDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHMQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD DE FKKRAYQCVV LQ  +PD  KAW +ICDVSR +F+KIYD L++TL ER
Sbjct: 274 KESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+ +   A+  G  +P  T +  VGFGVVLGED+KKFK
Sbjct: 394 QRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLEEGLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 551



 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEAMLQRAARETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              +L LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 589  LDNLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K +P +IA++I    T  L  N    K IDK+E A PGF+NV L + +  EQ+  
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGVQ P L  K +V+VDFSSPNIA++
Sbjct: 178 LLVNGVQLPVLGDKEKVIVDFSSPNIAKE 206


>gi|350537957|ref|NP_001233498.1| arginyl-tRNA synthetase, cytoplasmic [Pan troglodytes]
 gi|397479297|ref|XP_003810961.1| PREDICTED: arginine--tRNA ligase, cytoplasmic [Pan paniscus]
 gi|343960971|dbj|BAK62075.1| arginyl-tRNA synthetase [Pan troglodytes]
 gi|410307502|gb|JAA32351.1| arginyl-tRNA synthetase [Pan troglodytes]
          Length = 660

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/440 (52%), Positives = 301/440 (68%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDRMNDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDNGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E  KR
Sbjct: 454 -TRSGETVRLMDLLGEGLKR 472



 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 238/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 206


>gi|410217174|gb|JAA05806.1| arginyl-tRNA synthetase [Pan troglodytes]
 gi|410264500|gb|JAA20216.1| arginyl-tRNA synthetase [Pan troglodytes]
 gi|410333159|gb|JAA35526.1| arginyl-tRNA synthetase [Pan troglodytes]
          Length = 660

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/440 (52%), Positives = 301/440 (68%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDRMNDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDNGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E  KR
Sbjct: 454 -TRSGETVRLMDLLGEGLKR 472



 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 238/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  239 bits (609), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 206


>gi|15149476|ref|NP_002878.2| arginine--tRNA ligase, cytoplasmic [Homo sapiens]
 gi|20178331|sp|P54136.2|SYRC_HUMAN RecName: Full=Arginine--tRNA ligase, cytoplasmic; AltName:
           Full=Arginyl-tRNA synthetase; Short=ArgRS
 gi|12653513|gb|AAH00528.1| Arginyl-tRNA synthetase [Homo sapiens]
 gi|15779108|gb|AAH14619.1| Arginyl-tRNA synthetase [Homo sapiens]
 gi|30583627|gb|AAP36058.1| arginyl-tRNA synthetase [Homo sapiens]
 gi|61359156|gb|AAX41676.1| arginyl-tRNA synthetase [synthetic construct]
          Length = 660

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/440 (52%), Positives = 301/440 (68%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDRMNDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDNGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E  KR
Sbjct: 454 -TRSGETVRLMDLLGEGLKR 472



 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 238/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/196 (60%), Positives = 149/196 (76%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++TAF+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATAFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 206


>gi|426350931|ref|XP_004043016.1| PREDICTED: arginine--tRNA ligase, cytoplasmic [Gorilla gorilla
           gorilla]
          Length = 624

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/469 (50%), Positives = 315/469 (67%), Gaps = 38/469 (8%)

Query: 166 DILISKAIA----EEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQV 221
           D+L+S+  A    +E++ QG   S  ++        N P  + +++   L +VF HA++ 
Sbjct: 2   DVLVSECSARLLQQEDQIQGPLQSLQAER-------NKPTKNMINIISRLQEVFGHAIKA 54

Query: 222 AFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTS 281
           A+P+L +    V  + +    KFGD+QCN AM + ++ K K +K NP +IA++I    T 
Sbjct: 55  AYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQMLKTKEQKVNPREIAENI----TK 107

Query: 282 ELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFS 341
            L  N    + I+K+E+A PGF+NV L + +  EQ+  ++VNGVQ P L +  +V+VDFS
Sbjct: 108 HLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQLTSLLVNGVQLPALGENKKVIVDFS 163

Query: 342 SPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 401
           SPNIAKEMHVGHLRSTIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDY
Sbjct: 164 SPNIAKEMHVGHLRSTIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDY 223

Query: 402 LTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDF 461
           LT SPPI DLQ FYKESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++ 
Sbjct: 224 LTVSPPIGDLQVFYKESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQEL 283

Query: 462 QKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKS 521
            KIYD L+V+L ERGESFYQ  M  +V   E +G +++DDGRKI++     SIP+TIVKS
Sbjct: 284 NKIYDVLDVSLIERGESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPG-CSIPLTIVKS 342

Query: 522 DGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGH 581
           DGG+TYDTSDLAAI+QR+ EEKAD I+YV D GQ VHF+     TI     ++++ +   
Sbjct: 343 DGGYTYDTSDLAAIKQRLFEEKADTIIYVVDNGQSVHFQ-----TIFA--AAQMIGWYDP 395

Query: 582 DVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            V R+ H G     FG+++   + KF    T+S     L     E  KR
Sbjct: 396 KVTRVFHAG-----FGVVLGEDKKKFK---TRSGETVRLMDLLGEGLKR 436



 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 238/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 178 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 237

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ER
Sbjct: 238 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDVLDVSLIER 297

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 298 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 357

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 358 QRLFEEKADTIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 417

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR 
Sbjct: 418 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRL 477

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 478 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 517



 Score =  239 bits (609), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 429  LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKML 488

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 489  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 548

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 549  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 608

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 609  MAKGFDILGIKPVQRM 624



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 31  NKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 87

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 88  MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 139

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 140 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 170


>gi|119581911|gb|EAW61507.1| arginyl-tRNA synthetase [Homo sapiens]
          Length = 660

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/440 (52%), Positives = 301/440 (68%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDRMNDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDNGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E  KR
Sbjct: 454 -TRSGETVRLMDLLGEGLKR 472



 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 238/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/196 (60%), Positives = 149/196 (76%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++TAF+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATAFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 206


>gi|261858632|dbj|BAI45838.1| arginyl-tRNA synthetase [synthetic construct]
          Length = 660

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/440 (52%), Positives = 301/440 (68%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDRMNDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDNGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E  KR
Sbjct: 454 -TRSGETVRLMDLLGEGLKR 472



 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 237/340 (69%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ +VAYG IKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGYIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  236 bits (601), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ +VAYG IKYADLSHNR  DY+FSFDKML
Sbjct: 465  LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGYIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++TAF+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATAFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 206


>gi|74207302|dbj|BAE30837.1| unnamed protein product [Mus musculus]
          Length = 608

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/431 (53%), Positives = 300/431 (69%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 17  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 73

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K +P +IA++I    T  L  N    K IDK+E+A PGF+NV L + +  EQ+  
Sbjct: 74  KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 125

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGVQ P L  K +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+DV+RLNH
Sbjct: 126 LLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNH 185

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD DE FKKRAYQCVV L
Sbjct: 186 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLL 245

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW +ICDVSR +F+KIYD L++TL ERGESFYQ  M+ +V   E KG +++
Sbjct: 246 QSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQV 305

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+YV D GQ +HF
Sbjct: 306 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHF 364

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +     TI     ++++ +    V  + HVG     FG+++   + KF    T+S     
Sbjct: 365 Q-----TIFA--AAQMIGWYDPKVTLVTHVG-----FGVVLGEDKKKFK---TRSGETVR 409

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 410 LMDLLEEGLKR 420



 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/338 (60%), Positives = 239/338 (70%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 162 STIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 221

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD DE FKKRAYQCVV LQ  +PD  KAW +ICDVSR +F+KIYD L++TL ER
Sbjct: 222 KESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIER 281

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 282 GESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 341

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+ +   A+  G  +P  T +  VGFGVVLGED+KKFK
Sbjct: 342 QRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGVVLGEDKKKFK 401

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 402 TRSGETVRLMDLLEEGLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRL 461

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 462 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 499



 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 417  GLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 476

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 477  NTAAYLLYAFTRIRSIARLANIDEAMLQRAARETKIILDHEKEWKLGRCILRFPEILQKI 536

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 537  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 596

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 597  FDILGIKPVQRM 608



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 17  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 73

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K +P +IA++I    T  L  N    K IDK+E A PGF+NV L + +  EQ+  
Sbjct: 74  KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 125

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGVQ P L  K +V+VDFSSPNIA++
Sbjct: 126 LLVNGVQLPVLGDKEKVIVDFSSPNIAKE 154


>gi|62897153|dbj|BAD96517.1| arginyl-tRNA synthetase variant [Homo sapiens]
          Length = 660

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/440 (52%), Positives = 301/440 (68%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDGMNDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDNGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E  KR
Sbjct: 454 -TRSGETVRLMDLLGEGLKR 472



 Score =  394 bits (1013), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 237/340 (69%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDGMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   L   EL+ AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLAAEELNAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   L   EL+ AQ +VAYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LLGEGLKRSMDKLKEKERDKVLAAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++TAF+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATAFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 206


>gi|90077298|dbj|BAE88329.1| unnamed protein product [Macaca fascicularis]
          Length = 588

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/418 (53%), Positives = 296/418 (70%), Gaps = 24/418 (5%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + ++ K K +
Sbjct: 2   ININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCNSAMGISQMLKTKEQ 58

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L + +  EQ+  ++VNG
Sbjct: 59  KVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQLTSLLVNG 110

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           VQ P + +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ G+DV+RLNHVGDWG
Sbjct: 111 VQLPAVGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFAGYDVLRLNHVGDWG 170

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV LQ  +P
Sbjct: 171 TQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAYQCVVLLQGKNP 230

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           D  KAW++ICDVSR++F KIYD L+V+L ERGESFYQ  M  +V   E +G +++DDGRK
Sbjct: 231 DITKAWKLICDVSRQEFNKIYDALDVSLIERGESFYQDRMNDIVQEFEDRGFVQVDDGRK 290

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           I++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV D GQ VHF+ +  
Sbjct: 291 IVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLSEEKADMIIYVVDSGQSVHFQTIFA 349

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 622
           +       ++++ +    V R+ H G     FG+++   + KF     ++  + DL  
Sbjct: 350 A-------AQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFKTRAGETVRLMDLMG 395



 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 240/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 142 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 201

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ER
Sbjct: 202 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIER 261

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 262 GESFYQDRMNDIVQEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 321

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 322 QRLSEEKADMIIYVVDSGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 381

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TR+G+TV+L +L+ EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR 
Sbjct: 382 TRAGETVRLMDLMGEGLKRSMDKLKEKERDKVLTAEELNVAQTSIAYGCIKYADLSHNRL 441

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 442 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 481



 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 393  LMGEGLKRSMDKLKEKERDKVLTAEELNVAQTSIAYGCIKYADLSHNRLNDYIFSFDKML 452

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 453  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 512

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 513  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 572

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 573  MAKGFDILGIKPVQRM 588



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 91/144 (63%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + ++ K K +
Sbjct: 2   ININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCNSAMGISQMLKTKEQ 58

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+  ++VNG
Sbjct: 59  KVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQLTSLLVNG 110

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           VQ P + +  +V+VDFSSPNIA++
Sbjct: 111 VQLPAVGENKKVIVDFSSPNIAKE 134


>gi|431918122|gb|ELK17350.1| Protein WWC1 [Pteropus alecto]
          Length = 1777

 Score =  441 bits (1134), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/417 (52%), Positives = 294/417 (70%), Gaps = 24/417 (5%)

Query: 191  KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
            K    + N P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 1177 KSLQAERNRPTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCN 1233

Query: 251  DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
             AM + ++ K K +K NP +IA+SI    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 1234 SAMGISQMLKTKEQKVNPREIAESI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 1285

Query: 311  VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
             +   Q+ +++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ 
Sbjct: 1286 DFVSGQLTNLLVNGVQLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFA 1345

Query: 371  GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
            G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 1346 GYDVLRLNHIGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 1405

Query: 431  RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
            RAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+++L ERGESFYQ  M  +V  
Sbjct: 1406 RAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNKIYDALDISLIERGESFYQDRMNDIVKE 1465

Query: 491  LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
             E KG +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAA++QR+ EEKA  I+YV
Sbjct: 1466 FEDKGFVQVDDGRKIIFVPG-CSIPLTIVKSDGGYTYDTSDLAALKQRLFEEKAHMIIYV 1524

Query: 551  TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
             D GQ VHF+     TI     ++++ +    V R++H G     FG+++   + KF
Sbjct: 1525 VDSGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVSHAG-----FGVVLGEDKKKF 1569



 Score =  401 bits (1031), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/340 (59%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565  STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
            STIIG+++ RL E+ G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 1331 STIIGESMCRLFEFAGYDVLRLNHIGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 1390

Query: 625  KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
            KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+++L ER
Sbjct: 1391 KESKKRFDTEEEFKKRAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNKIYDALDISLIER 1450

Query: 685  GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
            GESFYQ  M  +V   E KG                   L++ K  G             
Sbjct: 1451 GESFYQDRMNDIVKEFEDKGFVQVDDGRKIIFVPGCSIPLTIVKSDGGYTYDTSDLAALK 1510

Query: 714  ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                      I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 1511 QRLFEEKAHMIIYVVDSGQSVHFQTIFAAAQMIGWYDPKVTRVSHAGFGVVLGEDKKKFK 1570

Query: 764  TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
            TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 1571 TRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTAEELKTAQTSVAYGCIKYADLSHNRL 1630

Query: 824  LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
             DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A ++ E
Sbjct: 1631 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANVDEE 1670



 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 145/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 1586 GLKRSMDKLKEKERDKVLTAEELKTAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 1645

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A ++ E L+ AAQ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 1646 NTAAYLLYAFTRIRSIARLANVDEEMLQKAAQETKIILDHEKEWKLGRCILRFPEILQKI 1705

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 1706 LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 1765

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 1766 FDILGIKPVQRM 1777



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 94/151 (62%), Gaps = 11/151 (7%)

Query: 2    NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
            N P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 1184 NRPTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQ 1240

Query: 62   IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
            + K K +K NP +IA+SI    T  L  N    + I+K+E A PGF+NV L + +   Q+
Sbjct: 1241 MLKTKEQKVNPREIAESI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSGQL 1292

Query: 122  KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             +++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 1293 TNLLVNGVQLPALGENKKVVVDFSSPNIAKE 1323


>gi|195384810|ref|XP_002051105.1| GJ14045 [Drosophila virilis]
 gi|194147562|gb|EDW63260.1| GJ14045 [Drosophila virilis]
          Length = 594

 Score =  441 bits (1134), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/419 (52%), Positives = 293/419 (69%), Gaps = 24/419 (5%)

Query: 203 DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 262
           D  ++ ++L  VFT A+  A+P   +  A +A+ N     KFGD+QCN+AM L K  KD+
Sbjct: 5   DTFAITEHLEKVFTQAIATAYPRFSNVPAIIAAVNAS--PKFGDYQCNNAMGLSKKMKDE 62

Query: 263 GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV 322
           G  K+P DI   I     +        + +I+KIEVA PGFVN+FLS+ +A   +  ++ 
Sbjct: 63  GINKSPRDIGLEIQRCCPA--------SPIIEKIEVAGPGFVNIFLSKEFAVSSLTRMLR 114

Query: 323 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
            GV+PP + +K R+LVDFSSPNIAK+MHVGHLRSTIIG++ISRLLE+L HDV+R+NH+GD
Sbjct: 115 EGVKPPKVPRK-RILVDFSSPNIAKQMHVGHLRSTIIGESISRLLEFLQHDVIRINHLGD 173

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           WGTQFGMLIAHL+D+FP++L +SPPI DLQ FYKESKKRFD DE FKKRAY  VV LQ  
Sbjct: 174 WGTQFGMLIAHLEDRFPNFLNESPPIGDLQEFYKESKKRFDADESFKKRAYNRVVTLQSG 233

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           +P   KAW+ ICDVSR++FQKIYDRL+VT+ ERGES+YQ  M  +V +L  KGLLELDDG
Sbjct: 234 EPAATKAWQQICDVSRKEFQKIYDRLDVTIQERGESYYQSRMLTVVEFLRNKGLLELDDG 293

Query: 503 RKIMWGE-DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           R+IMW + ++  IP+TIVKSDGGFTYDTSD+AAIR R+EE+ A W++YV D GQ  HF  
Sbjct: 294 REIMWPDVNKSGIPLTIVKSDGGFTYDTSDMAAIRCRLEEDLATWLIYVVDAGQSTHFHG 353

Query: 562 LEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           + ++       +     L  ++ R++HV     QFG+++     KF      +  ++DL
Sbjct: 354 IFKA-------AERAGILNPNIHRVDHV-----QFGVVLGEDGKKFKTRSGDTVKLSDL 400



 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/338 (60%), Positives = 239/338 (70%), Gaps = 43/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP++L +SPPI DLQ FY
Sbjct: 147 STIIGESISRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNFLNESPPIGDLQEFY 206

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD DE FKKRAY  VV LQ  +P   KAW+ ICDVSR++FQKIYDRL+VT+ ER
Sbjct: 207 KESKKRFDADESFKKRAYNRVVTLQSGEPAATKAWQQICDVSRKEFQKIYDRLDVTIQER 266

Query: 685 GESFYQKHMEQLVPYLEKKGNLSL----------TKKLGI-------------------- 714
           GES+YQ  M  +V +L  KG L L            K GI                    
Sbjct: 267 GESYYQSRMLTVVEFLRNKGLLELDDGREIMWPDVNKSGIPLTIVKSDGGFTYDTSDMAA 326

Query: 715 -------------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                        +YV D GQ  HF  + + A++AGILNPN  R+D V FGVVLGED KK
Sbjct: 327 IRCRLEEDLATWLIYVVDAGQSTHFHGIFKAAERAGILNPNIHRVDHVQFGVVLGEDGKK 386

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSGDTVKLS+LLDEGL+ SL +L+++ R   LTP EL EAQ+AVAYGCIKY DL HN
Sbjct: 387 FKTRSGDTVKLSDLLDEGLKYSLKQLQERGRDQILTPNELVEAQEAVAYGCIKYTDLCHN 446

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           R  DY+FSFDKMLDDRGNTAVYLLY YTRI SIAR +G
Sbjct: 447 RISDYIFSFDKMLDDRGNTAVYLLYTYTRICSIARNSG 484



 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 109/191 (57%), Positives = 139/191 (72%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+ SL +L+++ R   LTP EL EAQ+AVAYGCIKY DL HNR  DY+FSFDKMLDDRG
Sbjct: 404  GLKYSLKQLQERGRDQILTPNELVEAQEAVAYGCIKYTDLCHNRISDYIFSFDKMLDDRG 463

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLY YTRI SIAR +G +  +L        + LEHEKE+ L KTLL+++DVLM  
Sbjct: 464  NTAVYLLYTYTRICSIARNSGEDFSNLAEILDKFQIVLEHEKEWKLVKTLLKLHDVLMKC 523

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
               L LH LCE+ Y++ T F+EFYDNCYCIEK+  G+I  ++  R+L+ EATA V++ CF
Sbjct: 524  ANGLFLHFLCEFCYEVCTVFAEFYDNCYCIEKNKAGEICKINHSRILICEATAAVLRTCF 583

Query: 1109 DILNIRTVHKM 1119
             IL ++ V K+
Sbjct: 584  HILGLKPVAKI 594



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 11/146 (7%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           D  ++ ++L  VFT A+  A+P   +  A +A+ N     KFGD+QCN+AM L K  KD+
Sbjct: 5   DTFAITEHLEKVFTQAIATAYPRFSNVPAIIAAVNAS--PKFGDYQCNNAMGLSKKMKDE 62

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
           G  K+P DI   I     +        + +I+KIE A PGFVN+FLS+ +A   +  ++ 
Sbjct: 63  GINKSPRDIGLEIQRCCPA--------SPIIEKIEVAGPGFVNIFLSKEFAVSSLTRMLR 114

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIARK 152
            GV+PP + +K R+LVDFSSPNIA++
Sbjct: 115 EGVKPPKVPRK-RILVDFSSPNIAKQ 139


>gi|198282039|ref|NP_001127107.1| arginine--tRNA ligase, cytoplasmic [Pongo abelii]
 gi|75041818|sp|Q5RA20.1|SYRC_PONAB RecName: Full=Arginine--tRNA ligase, cytoplasmic; AltName:
           Full=Arginyl-tRNA synthetase; Short=ArgRS
 gi|55729309|emb|CAH91390.1| hypothetical protein [Pongo abelii]
          Length = 660

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/440 (51%), Positives = 301/440 (68%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + ++V   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMINVISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+N+ L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINIHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHIGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDMMNDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TI+KSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTILKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDNGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E  KR
Sbjct: 454 -TRSGETVRLMDLLGEGLKR 472



 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/340 (58%), Positives = 238/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHIGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDMMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTILKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGC+KYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCVKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDD+GNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDKGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  236 bits (602), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGC+KYADLSHNR  DY+FSFDKML
Sbjct: 465  LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCVKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DD+GNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDKGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ ++V   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMINVISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+N+ L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINIHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 206


>gi|334311444|ref|XP_003339619.1| PREDICTED: LOW QUALITY PROTEIN: arginyl-tRNA synthetase,
           cytoplasmic-like [Monodelphis domestica]
          Length = 662

 Score =  441 bits (1133), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/421 (53%), Positives = 299/421 (71%), Gaps = 28/421 (6%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK-IFKDKGEKKNPF 269
           L ++F  A++ A+PELG     V  + +    KFGD+QCN AM L K + K + +K NP 
Sbjct: 81  LQELFACAIRGAYPELGSPPLIVTPSQQP---KFGDYQCNSAMGLSKMLLKTQEQKVNPR 137

Query: 270 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT 329
           +IA++I    T  L  N    + I+K+E+A PGF+NV L + +  +Q+  +++NGVQPP 
Sbjct: 138 EIAENI----TRHLPDN----EYIEKVEIAGPGFINVHLRKDFVSKQLTKLLLNGVQPPA 189

Query: 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
           L ++ +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E++G+DV+RLNHVGDWGTQFGM
Sbjct: 190 LGERKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFVGYDVLRLNHVGDWGTQFGM 249

Query: 390 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA 449
           LIAHLQDKFPDY+T SPPI DLQAFYKESKKRFD +E FKKRAYQCVV LQ   PD  KA
Sbjct: 250 LIAHLQDKFPDYITVSPPIGDLQAFYKESKKRFDTEEEFKKRAYQCVVQLQSKMPDITKA 309

Query: 450 WEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE 509
           W +ICDVSRR+FQKIYD L+++L ERGESFYQ  M  +V   E+KG +++DDGRKI++  
Sbjct: 310 WNLICDVSRREFQKIYDALDISLIERGESFYQDRMTDIVKEFEEKGFVQVDDGRKIVFVP 369

Query: 510 DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIG 569
           +  S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV D GQ VHF+ +  +    
Sbjct: 370 E-SSVPLTIVKSDGGYTYDTSDLAAIKQRLMEEKADIIIYVVDSGQAVHFQAIFAA---- 424

Query: 570 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK 629
              ++++ +    V R++H G     FG+++   + KF    T+S     L    +E  K
Sbjct: 425 ---AQMIGWYDPKVTRVSHAG-----FGVVLGEDKKKFK---TRSGDTVRLIDLLEEGLK 473

Query: 630 R 630
           R
Sbjct: 474 R 474



 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/340 (60%), Positives = 241/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E++G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDY+T SPPI DLQAFY
Sbjct: 216 STIIGESMCRLFEFVGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYITVSPPIGDLQAFY 275

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ   PD  KAW +ICDVSRR+FQKIYD L+++L ER
Sbjct: 276 KESKKRFDTEEEFKKRAYQCVVQLQSKMPDITKAWNLICDVSRREFQKIYDALDISLIER 335

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E+KG                   L++ K  G             
Sbjct: 336 GESFYQDRMTDIVKEFEEKGFVQVDDGRKIVFVPESSVPLTIVKSDGGYTYDTSDLAAIK 395

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 396 QRLMEEKADIIIYVVDSGQAVHFQAIFAAAQMIGWYDPKVTRVSHAGFGVVLGEDKKKFK 455

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+RS+DKLK+K R   LTP EL  AQ +VA+GCI+YADLSHNR 
Sbjct: 456 TRSGDTVRLIDLLEEGLKRSMDKLKEKERDKVLTPEELKAAQTSVAFGCIRYADLSHNRM 515

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 516 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 555



 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 147/192 (76%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LTP EL  AQ +VA+GCI+YADLSHNR  DY+FSFDKMLDDRG
Sbjct: 471  GLKRSMDKLKEKERDKVLTPEELKAAQTSVAFGCIRYADLSHNRMNDYIFSFDKMLDDRG 530

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 531  NTAAYLLYAFTRIRSIARLANIDEEMLQKAAKETKIILDHEKEWKLGRCILRFPEILQKI 590

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EATA +M K 
Sbjct: 591  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEATAAIMAKG 650

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V KM
Sbjct: 651  FDILGIKPVQKM 662



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 89/139 (64%), Gaps = 12/139 (8%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK-IFKDKGEKKNPF 73
           L ++F  A++ A+PELG     V  + +    KFGD+QCN AM L K + K + +K NP 
Sbjct: 81  LQELFACAIRGAYPELGSPPLIVTPSQQP---KFGDYQCNSAMGLSKMLLKTQEQKVNPR 137

Query: 74  DIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPT 133
           +IA++I    T  L  N    + I+K+E A PGF+NV L + +  +Q+  +++NGVQPP 
Sbjct: 138 EIAENI----TRHLPDN----EYIEKVEIAGPGFINVHLRKDFVSKQLTKLLLNGVQPPA 189

Query: 134 LNKKLRVLVDFSSPNIARK 152
           L ++ +V+VDFSSPNIA++
Sbjct: 190 LGERKKVVVDFSSPNIAKE 208


>gi|90076998|dbj|BAE88179.1| unnamed protein product [Macaca fascicularis]
          Length = 380

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/403 (54%), Positives = 291/403 (72%), Gaps = 24/403 (5%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + ++ K K +
Sbjct: 2   ININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCNSAMGISQMLKTKEQ 58

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L + +  EQ+  ++VNG
Sbjct: 59  KVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQLTSLLVNG 110

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           VQ P + +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+DV+RLNHVGDWG
Sbjct: 111 VQLPAVGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESVSRLFEFAGYDVLRLNHVGDWG 170

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV LQ  +P
Sbjct: 171 TQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAYQCVVLLQGKNP 230

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           D  KAW++ICDVSR++F KIYD L+V+L ERGESFYQ  M  +V   E +G +++DDGRK
Sbjct: 231 DITKAWKLICDVSRQEFNKIYDALDVSLIERGESFYQDRMNDIVQEFEDRGFVQVDDGRK 290

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           I++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV D GQ VHF+ +  
Sbjct: 291 IVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLSEEKADMIIYVVDSGQSVHFQTIFA 349

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +       ++++ +    V R+ H G     FG+++   + KF
Sbjct: 350 A-------AQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKF 380



 Score =  255 bits (651), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/239 (54%), Positives = 156/239 (65%), Gaps = 41/239 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 142 STIIGESVSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 201

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ER
Sbjct: 202 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIER 261

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 262 GESFYQDRMNDIVQEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 321

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKF
Sbjct: 322 QRLSEEKADMIIYVVDSGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKF 380



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 91/144 (63%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + ++ K K +
Sbjct: 2   ININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCNSAMGISQMLKTKEQ 58

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+  ++VNG
Sbjct: 59  KVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQLTSLLVNG 110

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           VQ P + +  +V+VDFSSPNIA++
Sbjct: 111 VQLPAVGENKKVIVDFSSPNIAKE 134


>gi|410949334|ref|XP_003981378.1| PREDICTED: arginine--tRNA ligase, cytoplasmic [Felis catus]
          Length = 660

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/431 (52%), Positives = 302/431 (70%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K NP +IA++I    T  L  N    + ++K+E+A PGF+NV L + Y  +Q+ +
Sbjct: 126 KTKEQKVNPREIAENI----TKHLPDN----ECVEKVEIAGPGFINVHLRKDYVSQQLTN 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G++V+RLNH
Sbjct: 178 LLVNGVQLPPLGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYEVLRLNH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTISPPIGDLQAFYKESKKRFDTEEEFKKRAYQCVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW++ICDVSR++F KIYD L+++L ERGESFYQ  M  +V   E +G +++
Sbjct: 298 QSKNPDIIKAWKLICDVSRQEFNKIYDALDISLIERGESFYQDRMNDIVKEFEDRGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV D GQ VHF
Sbjct: 358 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDSGQSVHF 416

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +     TI G   ++++ +    V R+ H G     FG+++   + KF    T+S     
Sbjct: 417 Q-----TIFG--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK---TRSGETVR 461

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 462 LIDLLEEGLKR 472



 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 240/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G++V+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMSRLFEFAGYEVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTISPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+++L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNKIYDALDISLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDSGQSVHFQTIFGAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 145/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AAQ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEEMLQKAAQETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + G++  V+  R+LL EA A VM K 
Sbjct: 589  LDDLLLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGQVLKVNMWRMLLCEAVAAVMAKA 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 94/149 (63%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K NP +IA++I    T  L  N    + ++K+E A PGF+NV L + Y  +Q+ +
Sbjct: 126 KTKEQKVNPREIAENI----TKHLPDN----ECVEKVEIAGPGFINVHLRKDYVSQQLTN 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 178 LLVNGVQLPPLGENKKVIVDFSSPNIAKE 206


>gi|74227701|dbj|BAE35694.1| unnamed protein product [Mus musculus]
          Length = 447

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/388 (56%), Positives = 285/388 (73%), Gaps = 15/388 (3%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K +P +IA++I    T  L  N    K IDK+E+A PGF+NV L + +  EQ+  
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGVQ P L  K +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+DV+RLNH
Sbjct: 178 LLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD DE FKKRAYQCVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW +ICDVSR +F+KIYD L++TL ERGESFYQ  M+ +V   E KG +++
Sbjct: 298 QSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+YV D GQ +HF
Sbjct: 358 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHF 416

Query: 560 R-LLEESTIIG--DTISRLLEYLGHDVV 584
           + +   + +IG  D    L+ ++G  VV
Sbjct: 417 QTIFAAAQMIGWYDPKVTLVTHVGFGVV 444



 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 128/234 (54%), Positives = 151/234 (64%), Gaps = 41/234 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD DE FKKRAYQCVV LQ  +PD  KAW +ICDVSR +F+KIYD L++TL ER
Sbjct: 274 KESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGE 757
                     I+YV D GQ +HF+ +   A+  G  +P  T +  VGFGVVLGE
Sbjct: 394 QRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGVVLGE 447



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K +P +IA++I    T  L  N    K IDK+E A PGF+NV L + +  EQ+  
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGVQ P L  K +V+VDFSSPNIA++
Sbjct: 178 LLVNGVQLPVLGDKEKVIVDFSSPNIAKE 206


>gi|296192722|ref|XP_002744196.1| PREDICTED: arginine--tRNA ligase, cytoplasmic [Callithrix jacchus]
          Length = 660

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/440 (51%), Positives = 303/440 (68%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L  VF  A++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMININSRLQQVFGRAIKAAYPDLENPPLIVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K N  +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNTREIAENI----TKHLPDN----EYIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+ +++VNGV+ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ 
Sbjct: 169 DFVSEQLTNLLVNGVKLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESVSRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI+DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPISDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW +ICDVSR++F KIY+ L+VTL ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDIIKAWNLICDVSRQEFNKIYEALDVTLVERGESFYQDRMNDVVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R++H G     FG+++   + KF   
Sbjct: 408 VDSGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVSHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L    +E  KR
Sbjct: 454 -TRSGETVRLMDLLEEGLKR 472



 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/340 (60%), Positives = 240/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI+DLQAFY
Sbjct: 214 STIIGESVSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPISDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW +ICDVSR++F KIY+ L+VTL ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDIIKAWNLICDVSRQEFNKIYEALDVTLVER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDVVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDSGQSVHFQTIFAAAQMIGWYDPKVTRVSHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLEEGLKRSMDKLKEKQRDKVLTAEELDAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  236 bits (603), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 145/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKQRDKVLTAEELDAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  109 bits (273), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L  VF  A++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQQVFGRAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K N  +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNTREIAENI----TKHLPDN----EYIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            +++VNGV+ P L +  +V+VDFSSPNIA++
Sbjct: 176 TNLLVNGVKLPALGENKKVVVDFSSPNIAKE 206


>gi|74211969|dbj|BAE40154.1| unnamed protein product [Mus musculus]
          Length = 660

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/431 (51%), Positives = 300/431 (69%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K +P +IA++I    T  L  N    K IDK+E+A PGF+NV L + +  EQ+  
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGV+ P L  K +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+DV+RLNH
Sbjct: 178 LLVNGVELPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRF  DE FK+RAYQCVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFGADEEFKERAYQCVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW +ICDVSR +F+KIYD L++TL ERGESFYQ  M+ +V   E KG +++
Sbjct: 298 QSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+YV D GQ +HF
Sbjct: 358 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHF 416

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +++  +       ++++ +    V  + HVG     FG+++   + KF    T+S     
Sbjct: 417 QIIFAA-------AQMIGWYDPKVTLVTHVG-----FGVVLGEDKKKFK---TRSGETVR 461

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 462 LMDLLEEGLKR 472



 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/338 (59%), Positives = 239/338 (70%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRF  DE FK+RAYQCVV LQ  +PD  KAW +ICDVSR +F+KIYD L++TL ER
Sbjct: 274 KESKKRFGADEEFKERAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+++   A+  G  +P  T +  VGFGVVLGED+KKFK
Sbjct: 394 QRLFEEKANKIIYVVDNGQAIHFQIIFAAAQMIGWYDPKVTLVTHVGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLEEGLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 551



 Score =  233 bits (593), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEAMLQRAARETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 93/149 (62%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K +P +IA++I    T  L  N    K IDK+E A PGF+NV L + +  EQ+  
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGV+ P L  K +V+VDFSSPNIA++
Sbjct: 178 LLVNGVELPVLGDKEKVIVDFSSPNIAKE 206


>gi|73953488|ref|XP_853102.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic isoform 1 [Canis
           lupus familiaris]
          Length = 660

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/431 (51%), Positives = 302/431 (70%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K NP +IA++I    T  L  N    + ++++E+A PGF+NV L + +  +Q+ +
Sbjct: 126 KTKEQKVNPREIAENI----TKHLPDN----ECVERVEIAGPGFINVHLRKDFVSQQLTN 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ G+DV+RLNH
Sbjct: 178 LLVNGVQLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAYQCVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW++ICDVSR++F KIYD L+++L ERGESFYQ  M  +V   E KG +++
Sbjct: 298 QSKNPDIIKAWKLICDVSRQEFNKIYDALDISLIERGESFYQDRMNDVVKEFEDKGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     S+P+TIVKSDGG+TYDTSDLAA++QR+ EEKAD I+YV D GQ VHF
Sbjct: 358 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAALKQRLFEEKADMIIYVVDNGQSVHF 416

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +     TI G   ++++ +    V R++H G     FG+++   + KF    T+S     
Sbjct: 417 Q-----TIFG--AAQMIGWYDPKVTRVSHAG-----FGVVLGEDKKKFK---TRSGETVR 461

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 462 LIDLLEEGLKR 472



 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/340 (60%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMCRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+++L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNKIYDALDISLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDRMNDVVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAALK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFGAAQMIGWYDPKVTRVSHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A IN E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANINEE 553



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 145/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A IN E L+ AAQ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANINEEMLQKAAQETKIVLDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + G++  V+  R+LL EA A +M K 
Sbjct: 589  LDDLLLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGQVLKVNMWRMLLCEAVAAIMAKA 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 94/149 (63%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K NP +IA++I    T  L  N    + ++++E A PGF+NV L + +  +Q+ +
Sbjct: 126 KTKEQKVNPREIAENI----TKHLPDN----ECVERVEIAGPGFINVHLRKDFVSQQLTN 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 178 LLVNGVQLPALGENKKVVVDFSSPNIAKE 206


>gi|189054553|dbj|BAG37326.1| unnamed protein product [Homo sapiens]
          Length = 660

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/440 (51%), Positives = 299/440 (67%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FYKESK RFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKNRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDRMNDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++ DGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVGDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDNGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E  KR
Sbjct: 454 -TRSGETVRLMDLLGEGLKR 472



 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 237/340 (69%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ER
Sbjct: 274 KESKNRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVKEFEDRGFVQVGDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/196 (60%), Positives = 149/196 (76%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++TAF+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATAFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 206


>gi|395817094|ref|XP_003782010.1| PREDICTED: arginine--tRNA ligase, cytoplasmic [Otolemur garnettii]
          Length = 660

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/452 (49%), Positives = 309/452 (68%), Gaps = 38/452 (8%)

Query: 179 KQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNE 238
           ++ + +  S QTK           + +++   L +VF  A++ A+P+L +    V  + +
Sbjct: 59  RKSLQAERSKQTK-----------NMININSRLQEVFGRAIKAAYPDLENAPLIVTPSQQ 107

Query: 239 KYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEV 298
               KFGD+QCN AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+
Sbjct: 108 P---KFGDYQCNSAMGISQMLKSKEQKVNPREIAENI----TKHLPDN----ECIEKVEI 156

Query: 299 AKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           A PGF+NV L + +  +Q+ +++VNGVQ P L +  +V++DFSSPNIAKEMHVGHLRSTI
Sbjct: 157 AGPGFINVHLRKDFVSQQLSNLLVNGVQLPALGENKKVVIDFSSPNIAKEMHVGHLRSTI 216

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IG+++ RL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKES
Sbjct: 217 IGESMCRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKES 276

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES 478
           KKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+++L ERGES
Sbjct: 277 KKRFDTEEEFKKRAYQCVVLLQGRNPDIIKAWKLICDVSRQEFDKIYDALDISLIERGES 336

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQR 538
           FYQ  M  +V   E KG +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAA++QR
Sbjct: 337 FYQDRMNDIVEEFESKGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAALKQR 395

Query: 539 IEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 598
           + EEKAD I+YV D GQ VHF+ +  +       ++++ +    V R++H G     FG+
Sbjct: 396 LYEEKADIIIYVVDSGQSVHFQTVFAA-------AQMIGWYDPKVTRVSHAG-----FGV 443

Query: 599 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           ++   + KF    T+S     L+   +E  KR
Sbjct: 444 VLGEDKKKFK---TRSGETVRLRDLLEEGLKR 472



 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/338 (59%), Positives = 238/338 (70%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMCRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+++L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGRNPDIIKAWKLICDVSRQEFDKIYDALDISLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVEEFESKGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAALK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLYEEKADIIIYVVDSGQSVHFQTVFAAAQMIGWYDPKVTRVSHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLRDLLEEGLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRM 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 551



 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRMNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   L+ AAQ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEGMLQKAAQDTRIVLDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 93/147 (63%), Gaps = 11/147 (7%)

Query: 6   RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ K 
Sbjct: 71  KNMININSRLQEVFGRAIKAAYPDLENAPLIVTPSQQP---KFGDYQCNSAMGISQMLKS 127

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  +Q+ +++
Sbjct: 128 KEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSQQLSNLL 179

Query: 126 VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           VNGVQ P L +  +V++DFSSPNIA++
Sbjct: 180 VNGVQLPALGENKKVVIDFSSPNIAKE 206


>gi|291387790|ref|XP_002710413.1| PREDICTED: arginyl-tRNA synthetase [Oryctolagus cuniculus]
          Length = 660

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/431 (51%), Positives = 299/431 (69%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM +C++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIKAAYPDLENPPLLVTPSQQP---KFGDYQCNSAMGICQML 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K NP +IA++I    T  +  N    + I+K E+A PGF+N+ L + +  EQ+ +
Sbjct: 126 KAKEQKVNPREIAENI----TKHIPNN----EYIEKTEIAGPGFINIHLRKDFVSEQLSN 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGV  P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+DV+R+NH
Sbjct: 178 LLVNGVHLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRINH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAYQCVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q   PD  KAW++ICDVSR++F KIYD L ++L ERGESFYQ  M  +V   E+KG +++
Sbjct: 298 QSKSPDIIKAWKLICDVSRQEFNKIYDALEISLIERGESFYQDRMNDVVNEFEEKGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV D GQ +HF
Sbjct: 358 DDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDSGQALHF 416

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           + +  +       ++++ +    V R+ H G     FG+++   + KF    T+S     
Sbjct: 417 QAIFAA-------AQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK---TRSGETVR 461

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 462 LVDLLEEGLKR 472



 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+R+NHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMSRLFEFAGYDVLRINHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ   PD  KAW++ICDVSR++F KIYD L ++L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQSKSPDIIKAWKLICDVSRQEFNKIYDALEISLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E+KG                   L++ K  G             
Sbjct: 334 GESFYQDRMNDVVNEFEEKGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDSGQALHFQAIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLVDLLEEGLKRSMDKLKEKERDKVLTAEELQAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  235 bits (599), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 145/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTAEELQAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMSKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 93/149 (62%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM +C++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIKAAYPDLENPPLLVTPSQQP---KFGDYQCNSAMGICQML 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K NP +IA++I    T  +  N    + I+K E A PGF+N+ L + +  EQ+ +
Sbjct: 126 KAKEQKVNPREIAENI----TKHIPNN----EYIEKTEIAGPGFINIHLRKDFVSEQLSN 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGV  P L +  +V+VDFSSPNIA++
Sbjct: 178 LLVNGVHLPALGENKKVIVDFSSPNIAKE 206


>gi|355715394|gb|AES05313.1| arginyl-tRNA synthetase [Mustela putorius furo]
          Length = 659

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/431 (51%), Positives = 300/431 (69%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + +I 
Sbjct: 69  PTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQIL 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L + +  +Q+ +
Sbjct: 126 KTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSQQLTN 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGV+ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ G+DV+RLNH
Sbjct: 178 LLVNGVKLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAYQCVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  K W++ICDVSR++F KIYD L+++L ERGESFYQ  M  +V   E KG +++
Sbjct: 298 QSKNPDITKGWKLICDVSRQEFNKIYDALDISLVERGESFYQDRMNDIVKEFEDKGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     SIP+TIVKSDGG+TYDTSDLAA++QR+ EEKAD ++YV D GQ VHF
Sbjct: 358 DDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAALKQRLFEEKADMVIYVVDSGQSVHF 416

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +     T+ G   +++  +    V R++H G     FG+++   + KF    T+S     
Sbjct: 417 Q-----TVFG--AAQMAGWYDPKVTRVSHAG-----FGVVLGEDKKKFK---TRSGETVR 461

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 462 LIDLLEEGLKR 472



 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/340 (59%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMCRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  K W++ICDVSR++F KIYD L+++L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQSKNPDITKGWKLICDVSRQEFNKIYDALDISLVER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVKEFEDKGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAALK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++YV D GQ VHF+ +   A+ AG  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMVIYVVDSGQSVHFQTVFGAAQMAGWYDPKVTRVSHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTVEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ +
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDED 553



 Score =  234 bits (598), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 144/191 (75%), Gaps = 1/191 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTVEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ + L+ AAQ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEDMLKKAAQETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYDNCYC+EKD + G++  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDNCYCVEKDRQTGQVLKVNMWRMLLCEAVAAVMAKA 648

Query: 1108 FDILNIRTVHK 1118
            FDIL I+ V +
Sbjct: 649  FDILGIKPVQR 659



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 94/149 (63%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + +I 
Sbjct: 69  PTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQIL 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  +Q+ +
Sbjct: 126 KTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSQQLTN 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGV+ P L +  +V+VDFSSPNIA++
Sbjct: 178 LLVNGVKLPALGENKKVVVDFSSPNIAKE 206


>gi|332238981|ref|XP_003268683.1| PREDICTED: arginine--tRNA ligase, cytoplasmic [Nomascus leucogenys]
          Length = 660

 Score =  437 bits (1125), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/380 (56%), Positives = 280/380 (73%), Gaps = 13/380 (3%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGV+ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVRLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQLFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+++L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDTLDISLIERGESFYQDRMYDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G ++LDDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQLDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFR-LLEESTIIG 569
            D GQ VHF+ +   + +IG
Sbjct: 408 VDNGQSVHFQTIFAAAQMIG 427



 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/340 (59%), Positives = 238/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQLFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+++L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDTLDISLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMYDIVKEFEDRGFVQLDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  T +   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTPVFLAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLVDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DYVFSFDKMLDD+GNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYVFSFDKMLDDKGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DYVFSFDKML
Sbjct: 465  LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRLNDYVFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DD+GNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 525  DDKGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 645  MAKGFDILGIKPVQRM 660



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGV+ P L +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVRLPALGENKKVIVDFSSPNIAKE 206


>gi|66912037|gb|AAH97633.1| LOC733251 protein [Xenopus laevis]
          Length = 650

 Score =  437 bits (1125), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/428 (51%), Positives = 300/428 (70%), Gaps = 31/428 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++   L +VF  A++ A+PEL +   +V  + +    KFGD+QCN AM + ++ K   +
Sbjct: 64  ININAQLQEVFGTAIRAAYPELQNAPLAVTPSQQP---KFGDYQCNSAMGITQMLKAMNQ 120

Query: 265 KKNPFDIAQSIA-SVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
           K +P +IA  I  ++ T+EL         ++K+++A PGF+NV L + +  +Q+  ++VN
Sbjct: 121 KVSPREIADKIVKNIPTNEL---------VEKVDIAGPGFINVHLHKDFTSKQLSKLLVN 171

Query: 324 GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
           GVQPP + +K RV+VDFSSPNIAKEMHVGHLRSTIIG++I RL E++GHDV+RLNH+GDW
Sbjct: 172 GVQPPVIEEKKRVVVDFSSPNIAKEMHVGHLRSTIIGESICRLFEFVGHDVLRLNHLGDW 231

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGMLIAHLQDKFPDYLT SPPI DLQ+FYKESKKRFDEDE FKKRAYQCVV LQ   
Sbjct: 232 GTQFGMLIAHLQDKFPDYLTISPPIGDLQSFYKESKKRFDEDEEFKKRAYQCVVQLQNKT 291

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
           PD  +AW +IC+VSRR+FQKIYD L++++ +RGESFYQ  M  +V   E+KGL+++D+GR
Sbjct: 292 PDIIQAWNLICEVSRREFQKIYDNLDISIIDRGESFYQDRMIGVVKEFEEKGLVQVDEGR 351

Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR-LL 562
           K+++     SIP+TIVKSDGGFTYDTSDLAA++QR++EEKAD ++YV D GQ +H + + 
Sbjct: 352 KVVFPPG-CSIPLTIVKSDGGFTYDTSDLAALKQRLQEEKADMLIYVIDSGQAIHMQNVF 410

Query: 563 EESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 622
               +IG        +    V R+ H G     FG+++   + KF    T+S     L  
Sbjct: 411 SAGQMIG--------WYDPKVTRVEHAG-----FGVVLGEDKKKFK---TRSGDTVRLID 454

Query: 623 FYKESKKR 630
             +E  KR
Sbjct: 455 LLEEGLKR 462



 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/341 (59%), Positives = 244/341 (71%), Gaps = 41/341 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I RL E++GHDV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ+FY
Sbjct: 204 STIIGESICRLFEFVGHDVLRLNHLGDWGTQFGMLIAHLQDKFPDYLTISPPIGDLQSFY 263

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAYQCVV LQ   PD  +AW +IC+VSRR+FQKIYD L++++ +R
Sbjct: 264 KESKKRFDEDEEFKKRAYQCVVQLQNKTPDIIQAWNLICEVSRREFQKIYDNLDISIIDR 323

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E+KG                   L++ K  G             
Sbjct: 324 GESFYQDRMIGVVKEFEEKGLVQVDEGRKVVFPPGCSIPLTIVKSDGGFTYDTSDLAALK 383

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++YV D GQ +H + +    +  G  +P  TR++  GFGVVLGED+KKFK
Sbjct: 384 QRLQEEKADMLIYVIDSGQAIHMQNVFSAGQMIGWYDPKVTRVEHAGFGVVLGEDKKKFK 443

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+RS+DKLKDK R T LTP EL  AQ++VA+GCIKYADLSHNR 
Sbjct: 444 TRSGDTVRLIDLLEEGLKRSMDKLKDKGRDTVLTPEELLAAQRSVAFGCIKYADLSHNRM 503

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
            DY+FSFDKMLDDRGNTA YLLYAYTRI SIAR A I+ +D
Sbjct: 504 NDYIFSFDKMLDDRGNTAAYLLYAYTRIRSIARLANISDDD 544



 Score =  252 bits (644), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 150/192 (78%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLKDK R T LTP EL  AQ++VA+GCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 459  GLKRSMDKLKDKGRDTVLTPEELLAAQRSVAFGCIKYADLSHNRMNDYIFSFDKMLDDRG 518

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYAYTRI SIAR A I+ +DL  AA+ T V+LEHEKE+ L+K +LR  ++L  +
Sbjct: 519  NTAAYLLYAYTRIRSIARLANISDDDLHKAAKETEVTLEHEKEWKLSKCILRFPEILQKI 578

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+YLY+++T F+EFYDNCYC+EKD + G+I  V+  RLLL +A A VM K 
Sbjct: 579  LEDLLLHTLCDYLYELATTFTEFYDNCYCVEKDRQTGQIIKVNMSRLLLCDAAAAVMAKG 638

Query: 1108 FDILNIRTVHKM 1119
            FDIL ++ V KM
Sbjct: 639  FDILGLKPVQKM 650



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 93/148 (62%), Gaps = 13/148 (8%)

Query: 6   RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           +  +++   L +VF  A++ A+PEL +   +V  + +    KFGD+QCN AM + ++ K 
Sbjct: 61  KSMININAQLQEVFGTAIRAAYPELQNAPLAVTPSQQP---KFGDYQCNSAMGITQMLKA 117

Query: 66  KGEKKNPFDIAQSIA-SVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI 124
             +K +P +IA  I  ++ T+EL         ++K++ A PGF+NV L + +  +Q+  +
Sbjct: 118 MNQKVSPREIADKIVKNIPTNEL---------VEKVDIAGPGFINVHLHKDFTSKQLSKL 168

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           +VNGVQPP + +K RV+VDFSSPNIA++
Sbjct: 169 LVNGVQPPVIEEKKRVVVDFSSPNIAKE 196


>gi|12847471|dbj|BAB27583.1| unnamed protein product [Mus musculus]
          Length = 660

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/431 (52%), Positives = 298/431 (69%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K +P +IA++I    T  L  N    K IDK+E+A PGF+NV L + +  EQ+  
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
            +VNGVQ P L  K +V+VDFSSPNIAKEMHV HLRSTIIG+++SRL E+ G+DV+RLNH
Sbjct: 178 HLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVVHLRSTIIGESMSRLFEFAGYDVLRLNH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD DE FKKRAYQCVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW +ICDVSR +F+KIYD L++TL ERGESFYQ  M+ +V   E KG +++
Sbjct: 298 QSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+YV D GQ +HF
Sbjct: 358 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHF 416

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +     TI     ++++ +    V  + HVG     FG+++   + KF    T+S     
Sbjct: 417 Q-----TIFA--AAQMIGWYDPKVTLVTHVG-----FGVVLGEDKKKFK---TRSGETVR 461

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 462 LMDLLEEGLKR 472



 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/346 (60%), Positives = 242/346 (69%), Gaps = 45/346 (13%)

Query: 557 VHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 616
           VH R    STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPP
Sbjct: 210 VHLR----STIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPP 265

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           I DLQAFYKESKKRFD DE FKKRAYQCVV LQ  +PD  KAW +ICDVSR +F+KIYD 
Sbjct: 266 IGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDA 325

Query: 677 LNVTLTERGESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG----- 713
           L++TL ERGESFYQ  M+ +V   E KG                   L++ K  G     
Sbjct: 326 LDITLIERGESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYD 385

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YV D GQ +HF+ +   A+  G  +P  T +  VGFGVVL
Sbjct: 386 TSDLAAIKQRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGVVL 445

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           GED+KKFKTRSG+TV+L +LL+EGL+RSLDKLK+K R   LT  EL  AQ +VAYGCIKY
Sbjct: 446 GEDKKKFKTRSGETVRLMDLLEEGLKRSLDKLKEKERDKVLTEEELKAAQTSVAYGCIKY 505

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           ADLSHNR  DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 506 ADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 551



 Score =  233 bits (594), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RSLDKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSLDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEAMLQRAARETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 13/161 (8%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K +P +IA++I    T  L  N    K IDK+E A PGF+NV L + +  EQ+  
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
            +VNGVQ P L  K +V+VDFSSPNIA++   +  HL S I
Sbjct: 178 HLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVV--HLRSTI 216


>gi|195041309|ref|XP_001991229.1| GH12545 [Drosophila grimshawi]
 gi|193900987|gb|EDV99853.1| GH12545 [Drosophila grimshawi]
          Length = 668

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/457 (50%), Positives = 305/457 (66%), Gaps = 30/457 (6%)

Query: 168 LISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELG 227
           LI   +   + KQ ++    S  +       + + D +S+ ++L  VFT A+  A+P   
Sbjct: 44  LIKLQLVNTKLKQRLAIIKQSIVEENKTNPEMHLDDELSITEHLEKVFTKAIATAYPSFS 103

Query: 228 DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNP 287
           +    VA+ N     KFGD+QCN+AM L K  K+ G  K+P +IA  I            
Sbjct: 104 NVPVVVAAVNGP--SKFGDYQCNNAMGLVKKLKEAGINKSPREIAAEIQKCCPD------ 155

Query: 288 SLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAK 347
             + +I KIEVA  GF+NVFLS+ YA   I +++ +GV+PP + +K RVLVDFSSPNIAK
Sbjct: 156 --SPIIKKIEVAGAGFINVFLSKEYAVNSIINMLRDGVKPPRVPRK-RVLVDFSSPNIAK 212

Query: 348 EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 407
           +MHVGHLRSTIIG++ISRLLE++ HDV+R+NH+GDWGTQFGMLIAHL+D FP+++ +SPP
Sbjct: 213 QMHVGHLRSTIIGESISRLLEFMQHDVIRINHLGDWGTQFGMLIAHLEDCFPNFVNESPP 272

Query: 408 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 467
           I DLQ FYKESKKRFD D+ FKKRAY  VV+LQ  DP   KAW++ICDVSR++FQKIYDR
Sbjct: 273 IGDLQEFYKESKKRFDADDNFKKRAYNRVVSLQSGDPKSTKAWQLICDVSRKEFQKIYDR 332

Query: 468 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED-RGSIPMTIVKSDGGFT 526
           L+VT+TERGESFYQ  M  +V  L  K LLELD+GR+IMW +D +  IP+T+VKSDGGFT
Sbjct: 333 LDVTITERGESFYQSRMLAIVELLRSKNLLELDEGREIMWTDDSKSGIPLTVVKSDGGFT 392

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLG---HDV 583
           YDTSD+AAIR RIEE+ A WI+YV D GQ  HF          +TI +  E  G    +V
Sbjct: 393 YDTSDMAAIRHRIEEDLAIWIIYVVDSGQSTHF----------NTIFKAAERCGILNPNV 442

Query: 584 VRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
            R++HV     QFG+++     KF      +  ++DL
Sbjct: 443 HRVDHV-----QFGVVLGEDGKKFKTRSGDTVKLSDL 474



 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/338 (58%), Positives = 238/338 (70%), Gaps = 43/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRLLE++ HDV+R+NH+GDWGTQFGMLIAHL+D FP+++ +SPPI DLQ FY
Sbjct: 221 STIIGESISRLLEFMQHDVIRINHLGDWGTQFGMLIAHLEDCFPNFVNESPPIGDLQEFY 280

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD D+ FKKRAY  VV+LQ  DP   KAW++ICDVSR++FQKIYDRL+VT+TER
Sbjct: 281 KESKKRFDADDNFKKRAYNRVVSLQSGDPKSTKAWQLICDVSRKEFQKIYDRLDVTITER 340

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTK---------------------------------- 710
           GESFYQ  M  +V  L  K  L L +                                  
Sbjct: 341 GESFYQSRMLAIVELLRSKNLLELDEGREIMWTDDSKSGIPLTVVKSDGGFTYDTSDMAA 400

Query: 711 ---------KLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                     + I+YV D GQ  HF  + + A++ GILNPN  R+D V FGVVLGED KK
Sbjct: 401 IRHRIEEDLAIWIIYVVDSGQSTHFNTIFKAAERCGILNPNVHRVDHVQFGVVLGEDGKK 460

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSGDTVKLS+LLDEG++ SL +L+++ R   LT TEL EAQ+AVAYGCIKY DL HN
Sbjct: 461 FKTRSGDTVKLSDLLDEGMKYSLKQLQERGRDQILTHTELVEAQEAVAYGCIKYTDLCHN 520

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           R  DYVFSF+KMLDDRGNTAVYLLY YTRI SIAR +G
Sbjct: 521 RISDYVFSFEKMLDDRGNTAVYLLYTYTRICSIARNSG 558



 Score =  226 bits (577), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 142/191 (74%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++ SL +L+++ R   LT TEL EAQ+AVAYGCIKY DL HNR  DYVFSF+KMLDDRG
Sbjct: 478  GMKYSLKQLQERGRDQILTHTELVEAQEAVAYGCIKYTDLCHNRISDYVFSFEKMLDDRG 537

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLY YTRI SIAR +G +  ++        + L+HEKE+ LAKTLL+ +DVL+  
Sbjct: 538  NTAVYLLYTYTRICSIARNSGEDFSNVAAILDKYNLELDHEKEWKLAKTLLKFHDVLIKC 597

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
               L LH LCE+ Y++ +AF+EFYD+CYCIEK+ +GKI  ++  R+L+ EATA +++ CF
Sbjct: 598  ANGLFLHFLCEFCYEVCSAFTEFYDSCYCIEKNKDGKIIKINHSRILICEATAALLRTCF 657

Query: 1109 DILNIRTVHKM 1119
             IL ++TV KM
Sbjct: 658  KILGLKTVAKM 668



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 88/146 (60%), Gaps = 11/146 (7%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           D +S+ ++L  VFT A+  A+P   +    VA+ N     KFGD+QCN+AM L K  K+ 
Sbjct: 79  DELSITEHLEKVFTKAIATAYPSFSNVPVVVAAVNGP--SKFGDYQCNNAMGLVKKLKEA 136

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
           G  K+P +IA  I              + +I KIE A  GF+NVFLS+ YA   + +++ 
Sbjct: 137 GINKSPREIAAEIQKCCPD--------SPIIKKIEVAGAGFINVFLSKEYAVNSIINMLR 188

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIARK 152
           +GV+PP + +K RVLVDFSSPNIA++
Sbjct: 189 DGVKPPRVPRK-RVLVDFSSPNIAKQ 213


>gi|56403814|emb|CAI29693.1| hypothetical protein [Pongo abelii]
          Length = 659

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/440 (52%), Positives = 301/440 (68%), Gaps = 28/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + ++V   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMINVISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHIGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDMMNDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TI+KSDGG+TYDTSDLAAI+QR+ EEKA  I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTILKSDGGYTYDTSDLAAIKQRLFEEKA-MIIYV 406

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 407 VDNGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 452

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E  KR
Sbjct: 453 -TRSGETVRLMDLLGEGLKR 471



 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/339 (58%), Positives = 240/339 (70%), Gaps = 40/339 (11%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHIGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG----------------NLSLT------------------- 709
           GESFYQ  M  +V   E +G                ++ LT                   
Sbjct: 334 GESFYQDMMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTILKSDGGYTYDTSDLAAIK 393

Query: 710 -----KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKT 764
                +K  I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFKT
Sbjct: 394 QRLFEEKAMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFKT 453

Query: 765 RSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNL 824
           RSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGC+KYADLSHNR  
Sbjct: 454 RSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCVKYADLSHNRLN 513

Query: 825 DYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           DY+FSFDKMLDD+GNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 DYIFSFDKMLDDKGNTAAYLLYAFTRIRSIARLANIDEE 552



 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGC+KYADLSHNR  DY+FSFDKML
Sbjct: 464  LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCVKYADLSHNRLNDYIFSFDKML 523

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DD+GNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 524  DDKGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 583

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 584  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 643

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 644  MAKGFDILGIKPVQRM 659



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 95/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ ++V   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMINVISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 206


>gi|307168598|gb|EFN61656.1| Arginyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]
          Length = 642

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/468 (50%), Positives = 305/468 (65%), Gaps = 46/468 (9%)

Query: 165 HDILISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFP 224
           H I I     E E+ +  + S++SQ            S+ +S+ D L ++F  A+  A+P
Sbjct: 62  HRIAILTRTIEAERNKASAMSNTSQ------------SNIISINDTLCEIFRKAITAAYP 109

Query: 225 ELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELA 284
           ++ +    V ++N     KFGD+QCN AM L +     G K  P +IA +I     S+L 
Sbjct: 110 DVLNPPVIVTTSNNP---KFGDYQCNSAMPLAQQLSSSGNKVIPRNIANNI----MSKLE 162

Query: 285 TNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII-VNGVQPPTLNKKLRVLVDFSSP 343
            +P    ++DK E+A  GF+N++L R +    + + + +  V PP + KK RV+VDFSSP
Sbjct: 163 ESP----LVDKYEIAGAGFINIYLKRDFGQLVLSNWLKIGEVLPPYVKKK-RVIVDFSSP 217

Query: 344 NIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT 403
           NIAKEMHVGHLRSTIIGD+ISRLLEYLGHDV+RLNH+GDWGTQFGMLIAHLQDKFP+Y T
Sbjct: 218 NIAKEMHVGHLRSTIIGDSISRLLEYLGHDVLRLNHIGDWGTQFGMLIAHLQDKFPNYST 277

Query: 404 KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 463
            +P I DLQAFYKESK RFD DE FKKRAY+CVV LQ F+P+  K W+MICDVSR++F+K
Sbjct: 278 VTPAIQDLQAFYKESKIRFDSDEEFKKRAYECVVKLQAFEPNITKGWKMICDVSRKEFEK 337

Query: 464 IYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRG-SIPMTIVKSD 522
           +Y RL++ L ERGESFYQK ME +V  LE K LLE D+GRK+MWGE  G  IP+ IVKSD
Sbjct: 338 LYTRLDIKLIERGESFYQKRMELIVKELESKNLLEEDNGRKVMWGEKHGVGIPLIIVKSD 397

Query: 523 GGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHD 582
           GGFTYDTSD+AAI+QRIEEE+ADW     + GQ +HF++LE        +        H 
Sbjct: 398 GGFTYDTSDMAAIKQRIEEERADW----ANAGQSLHFQMLESCAKKAGILKSF-----H- 447

Query: 583 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
             R++HVG     FG+++   + KF    T+S     L     E  KR
Sbjct: 448 --RVHHVG-----FGVVLGEDKKKFK---TRSGETVKLIELLDEGLKR 485



 Score =  404 bits (1039), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/339 (60%), Positives = 243/339 (71%), Gaps = 40/339 (11%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+ISRLLEYLGHDV+RLNH+GDWGTQFGMLIAHLQDKFP+Y T +P I DLQAFY
Sbjct: 230 STIIGDSISRLLEYLGHDVLRLNHIGDWGTQFGMLIAHLQDKFPNYSTVTPAIQDLQAFY 289

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD DE FKKRAY+CVV LQ F+P+  K W+MICDVSR++F+K+Y RL++ L ER
Sbjct: 290 KESKIRFDSDEEFKKRAYECVVKLQAFEPNITKGWKMICDVSRKEFEKLYTRLDIKLIER 349

Query: 685 GESFYQKHMEQLVPYLEKKGNLS---------------------LTKKLGIVYVT----- 718
           GESFYQK ME +V  LE K  L                      +    G  Y T     
Sbjct: 350 GESFYQKRMELIVKELESKNLLEEDNGRKVMWGEKHGVGIPLIIVKSDGGFTYDTSDMAA 409

Query: 719 -------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTR 765
                        + GQ +HF++LE CAKKAGIL  +  R+  VGFGVVLGED+KKFKTR
Sbjct: 410 IKQRIEEERADWANAGQSLHFQMLESCAKKAGILK-SFHRVHHVGFGVVLGEDKKKFKTR 468

Query: 766 SGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLD 825
           SG+TVKL ELLDEGL+R+L KLK+K R   L+  EL  AQ++VAYGCIKYADL HNRN +
Sbjct: 469 SGETVKLIELLDEGLKRTLQKLKEKERDKVLSEEELKAAQESVAYGCIKYADLLHNRNHE 528

Query: 826 YVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YVFSFDKML+D+GNTAVY+LYA TRI SIAR A I  ++
Sbjct: 529 YVFSFDKMLEDKGNTAVYILYALTRIRSIARMAKITQDE 567



 Score =  183 bits (464), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 97/191 (50%), Positives = 124/191 (64%), Gaps = 30/191 (15%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R+L KLK+K R   L+  EL  AQ++VAYGCIKYADL HNRN +YVFSFDKML+D+G
Sbjct: 482  GLKRTLQKLKEKERDKVLSEEELKAAQESVAYGCIKYADLLHNRNHEYVFSFDKMLEDKG 541

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVY+LYA TRI SIAR A I  ++LR  A+  P+SLEHEKE+ LAK LL+  D+L+  
Sbjct: 542  NTAVYILYALTRIRSIARMAKITQDELRKHARDIPISLEHEKEWKLAKVLLKFPDLLL-- 599

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
                                         I+K+  G+I  VH GRLLL EATA V++KCF
Sbjct: 600  ----------------------------DIKKNQAGEIVKVHIGRLLLTEATAMVLEKCF 631

Query: 1109 DILNIRTVHKM 1119
             +L ++ V +M
Sbjct: 632  TLLGLKPVARM 642



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 13/152 (8%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N    + +S+ D L ++F  A+  A+P++ +    V ++N     KFGD+QCN AM L +
Sbjct: 83  NTSQSNIISINDTLCEIFRKAITAAYPDVLNPPVIVTTSNNP---KFGDYQCNSAMPLAQ 139

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
                G K  P +IA +I     S+L  +P    ++DK E A  GF+N++L R +    +
Sbjct: 140 QLSSSGNKVIPRNIANNI----MSKLEESP----LVDKYEIAGAGFINIYLKRDFGQLVL 191

Query: 122 KDIIVNG-VQPPTLNKKLRVLVDFSSPNIARK 152
            + +  G V PP + KK RV+VDFSSPNIA++
Sbjct: 192 SNWLKIGEVLPPYVKKK-RVIVDFSSPNIAKE 222


>gi|45361659|ref|NP_989403.1| arginine--tRNA ligase, cytoplasmic [Xenopus (Silurana) tropicalis]
 gi|82186176|sp|Q6P1S4.1|SYRC_XENTR RecName: Full=Arginine--tRNA ligase, cytoplasmic; AltName:
           Full=Arginyl-tRNA synthetase; Short=ArgRS
 gi|40787810|gb|AAH64888.1| arginyl-tRNA synthetase [Xenopus (Silurana) tropicalis]
          Length = 660

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/404 (51%), Positives = 294/404 (72%), Gaps = 26/404 (6%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++   + ++F  A+  A+PEL +   +V  + +    KFGD+QCN AMA+ ++ K   +
Sbjct: 74  ININAQIQEIFGTAIGAAYPELQNAPLAVTPSQQP---KFGDYQCNSAMAITQMLKAMNQ 130

Query: 265 KKNPFDIAQSIA-SVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
           K +P +IA  I  ++ T+EL         ++K+++A PGF+NV L + +  +QI  ++VN
Sbjct: 131 KVSPREIADKIVKNIPTNEL---------VEKVDIAGPGFINVHLHKDFTSKQISKLLVN 181

Query: 324 GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
           GVQPP + ++ +V+VDFSSPNIAKEMHVGHLRST+IGD+I RL E++GHDV+RLNH+GDW
Sbjct: 182 GVQPPVIWERKKVVVDFSSPNIAKEMHVGHLRSTVIGDSICRLFEFVGHDVLRLNHLGDW 241

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGMLIAHLQDKFPDYLT SPPI DLQ+FYKESKKRFDEDE FKKRAYQCVV LQ   
Sbjct: 242 GTQFGMLIAHLQDKFPDYLTVSPPIGDLQSFYKESKKRFDEDEEFKKRAYQCVVQLQNKT 301

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
           P++ +AW +ICDVSR++FQKIYD L++++ +RGESFYQ  M  +V   E+KGL+++D+GR
Sbjct: 302 PNFIQAWNLICDVSRKEFQKIYDCLDISIIDRGESFYQDRMIGVVKEFEEKGLVQVDEGR 361

Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           K+++     S+P+TIVKSDGGFTYDTSDLAA++QR++EEKAD I+YV D GQ +H + + 
Sbjct: 362 KVVFPPG-CSVPLTIVKSDGGFTYDTSDLAALKQRLQEEKADMIIYVIDSGQAIHMQNVF 420

Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
            +        R++ +    V R+ H G     FG+++   + KF
Sbjct: 421 SA-------GRMIGWYDPKVTRIEHAG-----FGVVLGEDKKKF 452



 Score =  404 bits (1039), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/341 (59%), Positives = 242/341 (70%), Gaps = 41/341 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD+I RL E++GHDV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ+FY
Sbjct: 214 STVIGDSICRLFEFVGHDVLRLNHLGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQSFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAYQCVV LQ   P++ +AW +ICDVSR++FQKIYD L++++ +R
Sbjct: 274 KESKKRFDEDEEFKKRAYQCVVQLQNKTPNFIQAWNLICDVSRKEFQKIYDCLDISIIDR 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E+KG                   L++ K  G             
Sbjct: 334 GESFYQDRMIGVVKEFEEKGLVQVDEGRKVVFPPGCSVPLTIVKSDGGFTYDTSDLAALK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +H + +    +  G  +P  TR++  GFGVVLGED+KKFK
Sbjct: 394 QRLQEEKADMIIYVIDSGQAIHMQNVFSAGRMIGWYDPKVTRIEHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LLDEGL+RS++KLKDK R   LT  EL  AQ +VA+GCIKYADLSHNR 
Sbjct: 454 TRSGDTVRLIDLLDEGLKRSMEKLKDKGRDKVLTAEELLAAQTSVAFGCIKYADLSHNRM 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
            DY+FSFDKMLDDRGNTA YLLYAYTRI SIAR A I+ ED
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAYTRIRSIARLANISDED 554



 Score =  246 bits (629), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 147/192 (76%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS++KLKDK R   LT  EL  AQ +VA+GCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMEKLKDKGRDKVLTAEELLAAQTSVAFGCIKYADLSHNRMNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYAYTRI SIAR A I+ EDL  AA+ T + LEHEKE+ L+K +LR  ++L  +
Sbjct: 529  NTAAYLLYAYTRIRSIARLANISDEDLHKAAKETEIILEHEKEWKLSKCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+YLY+++T F+EFYDNCYC+EKD + G+I  V+  RLLL +ATA VM K 
Sbjct: 589  LDDLLLHTLCDYLYELATTFTEFYDNCYCVEKDRQTGQIVKVNMSRLLLCDATAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V KM
Sbjct: 649  FDILGIKPVQKM 660



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 93/148 (62%), Gaps = 13/148 (8%)

Query: 6   RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           +  +++   + ++F  A+  A+PEL +   +V  + +    KFGD+QCN AMA+ ++ K 
Sbjct: 71  KSMININAQIQEIFGTAIGAAYPELQNAPLAVTPSQQP---KFGDYQCNSAMAITQMLKA 127

Query: 66  KGEKKNPFDIAQSIA-SVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI 124
             +K +P +IA  I  ++ T+EL         ++K++ A PGF+NV L + +  +Q+  +
Sbjct: 128 MNQKVSPREIADKIVKNIPTNEL---------VEKVDIAGPGFINVHLHKDFTSKQISKL 178

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           +VNGVQPP + ++ +V+VDFSSPNIA++
Sbjct: 179 LVNGVQPPVIWERKKVVVDFSSPNIAKE 206


>gi|149052278|gb|EDM04095.1| arginyl-tRNA synthetase (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 591

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/431 (51%), Positives = 300/431 (69%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L ++F  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQELFGCAIKAAYPDLENPPLVVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K +P +IA++I    T  L  N    + ID++E+A PGF+NV L + +  EQ+ +
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFVSEQLTN 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G++V+RLNH
Sbjct: 178 LLVNGVQLPVLGENEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYNVLRLNH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAY+CVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAYECVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW +ICDVSR +F KIYD L++TL ERGESFYQ  M+ +V   E KG +++
Sbjct: 298 QSKNPDIMKAWNLICDVSREEFNKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+YV D GQ  HF
Sbjct: 358 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQATHF 416

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +     T+     ++++ +    V R+ HVG     FG+++   + KF    T+S     
Sbjct: 417 Q-----TVFA--AAQMIGWYDPKVTRVAHVG-----FGVVLGEDKKKFK---TRSGETVR 461

Query: 620 LQAFYKESKKR 630
           L    +E  +R
Sbjct: 462 LMDLLEEGLRR 472



 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/341 (60%), Positives = 240/341 (70%), Gaps = 42/341 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G++V+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMSRLFEFAGYNVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAY+CVV LQ  +PD  KAW +ICDVSR +F KIYD L++TL ER
Sbjct: 274 KESKKRFDTEEEFKKRAYECVVLLQSKNPDIMKAWNLICDVSREEFNKIYDALDITLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ  HF+ +   A+  G  +P  TR+  VGFGVVLGED+KKFK
Sbjct: 394 QRLFEEKANKIIYVVDNGQATHFQTVFAAAQMIGWYDPKVTRVAHVGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGLRRS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLEEGLRRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIA-SIARTAGINSE 863
            DYVFSFDKMLDDRGNTA YLLYA+TRI+ SIAR A I+ E
Sbjct: 514 NDYVFSFDKMLDDRGNTAAYLLYAFTRISTSIARLANIDEE 554



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/95 (71%), Positives = 76/95 (80%), Gaps = 1/95 (1%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GLRRS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DYVFSFDKMLDDRG
Sbjct: 469  GLRRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYVFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIA-SIARTAGINSEDLRVAAQST 1022
            NTA YLLYA+TRI+ SIAR A I+ E L+ AA+ T
Sbjct: 529  NTAAYLLYAFTRISTSIARLANIDEEMLQRAARET 563



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 94/149 (63%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L ++F  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQELFGCAIKAAYPDLENPPLVVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K +P +IA++I    T  L  N    + ID++E A PGF+NV L + +  EQ+ +
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFVSEQLTN 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 178 LLVNGVQLPVLGENEKVIVDFSSPNIAKE 206


>gi|158631214|ref|NP_001099247.2| arginine--tRNA ligase, cytoplasmic [Rattus norvegicus]
 gi|300669674|sp|P40329.2|SYRC_RAT RecName: Full=Arginine--tRNA ligase, cytoplasmic; AltName:
           Full=Arginyl-tRNA synthetase; Short=ArgRS
 gi|171846737|gb|AAI61929.1| Arginyl-tRNA synthetase [Rattus norvegicus]
          Length = 660

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/431 (51%), Positives = 300/431 (69%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L ++F  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQELFGCAIKAAYPDLENPPLVVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K +P +IA++I    T  L  N    + ID++E+A PGF+NV L + +  EQ+ +
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFVSEQLTN 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G++V+RLNH
Sbjct: 178 LLVNGVQLPVLGENEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYNVLRLNH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAY+CVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAYECVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW +ICDVSR +F KIYD L++TL ERGESFYQ  M+ +V   E KG +++
Sbjct: 298 QSKNPDIMKAWNLICDVSREEFNKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+YV D GQ  HF
Sbjct: 358 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQATHF 416

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +     T+     ++++ +    V R+ HVG     FG+++   + KF    T+S     
Sbjct: 417 Q-----TVFA--AAQMIGWYDPKVTRVAHVG-----FGVVLGEDKKKFK---TRSGETVR 461

Query: 620 LQAFYKESKKR 630
           L    +E  +R
Sbjct: 462 LMDLLEEGLRR 472



 Score =  401 bits (1030), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/340 (60%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G++V+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMSRLFEFAGYNVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAY+CVV LQ  +PD  KAW +ICDVSR +F KIYD L++TL ER
Sbjct: 274 KESKKRFDTEEEFKKRAYECVVLLQSKNPDIMKAWNLICDVSREEFNKIYDALDITLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ  HF+ +   A+  G  +P  TR+  VGFGVVLGED+KKFK
Sbjct: 394 QRLFEEKANKIIYVVDNGQATHFQTVFAAAQMIGWYDPKVTRVAHVGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGLRRS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLEEGLRRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DYVFSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 145/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GLRRS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DYVFSFDKMLDDRG
Sbjct: 469  GLRRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYVFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEEMLQRAARETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 94/149 (63%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L ++F  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 69  PTKNMININSRLQELFGCAIKAAYPDLENPPLVVTPSQQP---KFGDYQCNSAMGISQML 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K +P +IA++I    T  L  N    + ID++E A PGF+NV L + +  EQ+ +
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFVSEQLTN 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 178 LLVNGVQLPVLGENEKVIVDFSSPNIAKE 206


>gi|327260697|ref|XP_003215170.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Anolis
           carolinensis]
          Length = 663

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/432 (51%), Positives = 302/432 (69%), Gaps = 28/432 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK-I 258
           P    +++   L D+F  A++ A+P+L +   +V  + +    KFGD+QCN AM++ + +
Sbjct: 71  PSKGMININSRLQDIFGAAIKAAYPDLENPPLAVTPSQQP---KFGDYQCNSAMSITQML 127

Query: 259 FKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK 318
            K K +K +P +IA  IA  +           + I+K+E+A PGF+NV L + +   Q+ 
Sbjct: 128 LKTKEQKISPREIADKIARNIPDN--------ECIEKVEIAGPGFINVHLKKDFVSRQLS 179

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            ++VNGVQPP + ++ RV+VDFSSPNIAKEMHVGHLRSTIIGD++ RL E++G+DV+RLN
Sbjct: 180 SLLVNGVQPPAIGERKRVVVDFSSPNIAKEMHVGHLRSTIIGDSMCRLFEFVGYDVLRLN 239

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           H+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESK+RFD +E FKKRAYQCVV 
Sbjct: 240 HLGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKRRFDTEEEFKKRAYQCVVL 299

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ  +P++ KAW++ICDVSR++FQKIYD L+++L ERGES+YQ  M  +V  LE+KG+++
Sbjct: 300 LQSKNPEFIKAWKLICDVSRQEFQKIYDCLDISLVERGESYYQDMMPDIVKELEEKGVVQ 359

Query: 499 LDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           LDDGRKI++     SIP+TIVKSDGGFTYDTSDLAAI+QR+ EEKAD I+YV D GQ VH
Sbjct: 360 LDDGRKIVFVPG-CSIPLTIVKSDGGFTYDTSDLAAIKQRLLEEKADSIIYVVDSGQSVH 418

Query: 559 FRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 618
            +     TI     ++++ +    V R+ H       FG+++   + KF    T+S    
Sbjct: 419 LQ-----TIFA--AAQMVGWYDPQVTRVVH-----APFGVVLGEDKKKFK---TRSGDTV 463

Query: 619 DLQAFYKESKKR 630
            L    +E  KR
Sbjct: 464 RLIDLLEEGLKR 475



 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/340 (58%), Positives = 243/340 (71%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ RL E++G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 217 STIIGDSMCRLFEFVGYDVLRLNHLGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 276

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK+RFD +E FKKRAYQCVV LQ  +P++ KAW++ICDVSR++FQKIYD L+++L ER
Sbjct: 277 KESKRRFDTEEEFKKRAYQCVVLLQSKNPEFIKAWKLICDVSRQEFQKIYDCLDISLVER 336

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GES+YQ  M  +V  LE+KG                   L++ K  G             
Sbjct: 337 GESYYQDMMPDIVKELEEKGVVQLDDGRKIVFVPGCSIPLTIVKSDGGFTYDTSDLAAIK 396

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VH + +   A+  G  +P  TR+    FGVVLGED+KKFK
Sbjct: 397 QRLLEEKADSIIYVVDSGQSVHLQTIFAAAQMVGWYDPQVTRVVHAPFGVVLGEDKKKFK 456

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+RS+DKLK+K R   LTP EL  AQ +VA+GCIKY+DLSHNR 
Sbjct: 457 TRSGDTVRLIDLLEEGLKRSMDKLKEKERDKVLTPEELKAAQTSVAFGCIKYSDLSHNRI 516

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ +
Sbjct: 517 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLASIDEK 556



 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 148/192 (77%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LTP EL  AQ +VA+GCIKY+DLSHNR  DY+FSFDKMLDDRG
Sbjct: 472  GLKRSMDKLKEKERDKVLTPEELKAAQTSVAFGCIKYSDLSHNRINDYIFSFDKMLDDRG 531

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ + L+ AA++T + L+HEKE+ L + +LR  +++  +
Sbjct: 532  NTAAYLLYAFTRIRSIARLASIDEKTLQTAARTTEIILDHEKEWKLGRCILRFPEIIQKI 591

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+YLY+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EATA VM K 
Sbjct: 592  LDDLLLHTLCDYLYELATTFTEFYDSCYCVEKDRQTGKIVKVNMWRMLLCEATAAVMAKG 651

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V KM
Sbjct: 652  FDILGIKPVQKM 663



 Score =  110 bits (275), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 92/150 (61%), Gaps = 12/150 (8%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK-I 62
           P +  +++   L D+F  A++ A+P+L +   +V  + +    KFGD+QCN AM++ + +
Sbjct: 71  PSKGMININSRLQDIFGAAIKAAYPDLENPPLAVTPSQQP---KFGDYQCNSAMSITQML 127

Query: 63  FKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK 122
            K K +K +P +IA  IA  +           + I+K+E A PGF+NV L + +   Q+ 
Sbjct: 128 LKTKEQKISPREIADKIARNIPDN--------ECIEKVEIAGPGFINVHLKKDFVSRQLS 179

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            ++VNGVQPP + ++ RV+VDFSSPNIA++
Sbjct: 180 SLLVNGVQPPAIGERKRVVVDFSSPNIAKE 209


>gi|301766472|ref|XP_002918656.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Ailuropoda
           melanoleuca]
          Length = 660

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/431 (51%), Positives = 300/431 (69%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + +I 
Sbjct: 69  PTKNMININSQLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQIL 125

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K NP +IA++I    T  L  N    + ++K+E+A PGF+NV L + +  +Q+ +
Sbjct: 126 KTKEQKVNPREIAENI----TRHLPDN----ECVEKVEIAGPGFINVHLRKDFVSQQLTN 177

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGV+ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ G+DV+RLNH
Sbjct: 178 LLVNGVKLPALGEYKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNH 237

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEDFKKRAYQCVVLL 297

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW++ICDVSR++F +IY  L+++L ERGESFYQ  M  +V   E KG +++
Sbjct: 298 QSKNPDIIKAWKLICDVSRQEFNRIYGALDISLIERGESFYQDRMNDIVEEFEDKGFVQV 357

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     SIP+TIVKSDGG+TYDTSDLAA++QR+ EEKAD I+YV D GQ VHF
Sbjct: 358 DDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAALKQRLFEEKADMIIYVVDSGQSVHF 416

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +     TI G   +++  +    V R++H G     FG+++   + KF    T+S     
Sbjct: 417 Q-----TIFG--AAQMAGWYDPKVTRVSHAG-----FGVVLGEDKKKFK---TRSGETVR 461

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 462 LIDLLEEGLKR 472



 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/338 (59%), Positives = 238/338 (70%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMCRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F +IY  L+++L ER
Sbjct: 274 KESKKRFDTEEDFKKRAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNRIYGALDISLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVEEFEDKGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAALK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+ AG  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDSGQSVHFQTIFGAAQMAGWYDPKVTRVSHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 551



 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   L+ AAQ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEGMLQKAAQETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + G++  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGQVLKVNMWRMLLCEAVAAVMAKA 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 94/149 (63%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + +I 
Sbjct: 69  PTKNMININSQLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQIL 125

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K NP +IA++I    T  L  N    + ++K+E A PGF+NV L + +  +Q+ +
Sbjct: 126 KTKEQKVNPREIAENI----TRHLPDN----ECVEKVEIAGPGFINVHLRKDFVSQQLTN 177

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGV+ P L +  +V+VDFSSPNIA++
Sbjct: 178 LLVNGVKLPALGEYKKVVVDFSSPNIAKE 206


>gi|417412168|gb|JAA52495.1| Putative arginyl-trna synthetase, partial [Desmodus rotundus]
          Length = 659

 Score =  434 bits (1117), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/433 (51%), Positives = 299/433 (69%), Gaps = 27/433 (6%)

Query: 198 NVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 257
           N P  + +++   L ++F  A++ A P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 66  NKPTENMININSRLQEIFGWAIRAAHPDLENPPLVVTPSQQP---KFGDYQCNSAMGISQ 122

Query: 258 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 317
           + K K ++ NP +IA++I    T  L  N      I+K+E+A PGF+NV L + +  +Q+
Sbjct: 123 MLKTKEQRVNPREIAENI----TKHLPDN----DCIEKVEIAGPGFINVHLRKDFVSKQL 174

Query: 318 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
            +++VNG + P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ G+DV+RL
Sbjct: 175 TNLLVNGARLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRL 234

Query: 378 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           NHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV
Sbjct: 235 NHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAYQCVV 294

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
            LQ  DPD  KAW++ICDVSR++F KIYD L+++L ERGESFYQ  M  +V   E +G +
Sbjct: 295 LLQSKDPDIIKAWKLICDVSRQEFNKIYDALDISLIERGESFYQDRMNDVVKEFEDRGFV 354

Query: 498 ELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGV 557
           ++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV D GQ V
Sbjct: 355 QVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLHEEKADMIIYVVDNGQSV 413

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           HF+     TI     ++++ +    V R++H G     FG+++   + KF    T+S   
Sbjct: 414 HFQ-----TIFA--AAQMIGWYDPKVTRVSHAG-----FGVVLGEDKKKFK---TRSGET 458

Query: 618 ADLQAFYKESKKR 630
             L    +E  KR
Sbjct: 459 VRLIDLLEEGLKR 471



 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 213 STIIGESMCRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 272

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  DPD  KAW++ICDVSR++F KIYD L+++L ER
Sbjct: 273 KESKKRFDTEEEFKKRAYQCVVLLQSKDPDIIKAWKLICDVSRQEFNKIYDALDISLIER 332

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 333 GESFYQDRMNDVVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 392

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 393 QRLHEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVSHAGFGVVLGEDKKKFK 452

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 453 TRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRL 512

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 513 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLASIDEE 552



 Score =  235 bits (599), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 145/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 468  GLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 527

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 528  NTAAYLLYAFTRIRSIARLASIDEEMLQKAARETKIILDHEKEWKLGRCILRFPEILQKI 587

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 588  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMCRMLLCEAVATVMAKG 647

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 648  FDILGIKPVQRM 659



 Score =  106 bits (264), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P  + +++   L ++F  A++ A P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 66  NKPTENMININSRLQEIFGWAIRAAHPDLENPPLVVTPSQQP---KFGDYQCNSAMGISQ 122

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K ++ NP +IA++I    T  L  N      I+K+E A PGF+NV L + +  +Q+
Sbjct: 123 MLKTKEQRVNPREIAENI----TKHLPDN----DCIEKVEIAGPGFINVHLRKDFVSKQL 174

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            +++VNG + P L +  +V+VDFSSPNIA++
Sbjct: 175 TNLLVNGARLPALGENKKVVVDFSSPNIAKE 205


>gi|349603011|gb|AEP98973.1| Arginyl-tRNA synthetase, cytoplasmic-like protein, partial [Equus
           caballus]
          Length = 476

 Score =  434 bits (1117), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/426 (52%), Positives = 297/426 (69%), Gaps = 27/426 (6%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ K K +
Sbjct: 67  ININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQMLKSKEQ 123

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L + +  EQ+  ++VNG
Sbjct: 124 KVNPREIAENI----TKHLPGN----ECIEKVEIAGPGFINVHLRKDFVSEQLTSLLVNG 175

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           VQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ G+DV+RLNH+GDWG
Sbjct: 176 VQLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNHLGDWG 235

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV LQ  +P
Sbjct: 236 TQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAYQCVVLLQSKNP 295

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           D  KAW++ICDVSR++F KIYD L+++L ERGESFYQ  M  +V   E +G +++DDGRK
Sbjct: 296 DITKAWKLICDVSRQEFNKIYDALDISLIERGESFYQDRMNDIVKEFEDRGFVQVDDGRK 355

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           I++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV D GQ VH +    
Sbjct: 356 IVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDNGQSVHLQ---- 410

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
            TI     ++++ +    V R++H G     FG+++   + KF    T+S     L    
Sbjct: 411 -TIFA--AAQMIGWYDPKVTRVSHAG-----FGVVLGEDKKKFK---TRSGETVRLIDLL 459

Query: 625 KESKKR 630
           +E  KR
Sbjct: 460 EEGLKR 465



 Score =  291 bits (746), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 147/269 (54%), Positives = 182/269 (67%), Gaps = 41/269 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 207 STIIGESMCRLFEFAGYDVLRLNHLGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 266

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+++L ER
Sbjct: 267 KESKKRFDTEEEFKKRAYQCVVLLQSKNPDITKAWKLICDVSRQEFNKIYDALDISLIER 326

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 327 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 386

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VH + +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 387 QRLFEEKADMIIYVVDNGQSVHLQTIFAAAQMIGWYDPKVTRVSHAGFGVVLGEDKKKFK 446

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNR 792
           TRSG+TV+L +LL+EGL+RS+DKL++K R
Sbjct: 447 TRSGETVRLIDLLEEGLKRSMDKLREKER 475



 Score =  110 bits (274), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 90/144 (62%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ K K +
Sbjct: 67  ININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQMLKSKEQ 123

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+  ++VNG
Sbjct: 124 KVNPREIAENI----TKHLPGN----ECIEKVEIAGPGFINVHLRKDFVSEQLTSLLVNG 175

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           VQ P L +  +V+VDFSSPNIA++
Sbjct: 176 VQLPALGENKKVVVDFSSPNIAKE 199


>gi|281338995|gb|EFB14579.1| hypothetical protein PANDA_007149 [Ailuropoda melanoleuca]
          Length = 645

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/431 (51%), Positives = 300/431 (69%), Gaps = 27/431 (6%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
           P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + +I 
Sbjct: 54  PTKNMININSQLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQIL 110

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K NP +IA++I    T  L  N    + ++K+E+A PGF+NV L + +  +Q+ +
Sbjct: 111 KTKEQKVNPREIAENI----TRHLPDN----ECVEKVEIAGPGFINVHLRKDFVSQQLTN 162

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGV+ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ G+DV+RLNH
Sbjct: 163 LLVNGVKLPALGEYKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNH 222

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV L
Sbjct: 223 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEDFKKRAYQCVVLL 282

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  +PD  KAW++ICDVSR++F +IY  L+++L ERGESFYQ  M  +V   E KG +++
Sbjct: 283 QSKNPDIIKAWKLICDVSRQEFNRIYGALDISLIERGESFYQDRMNDIVEEFEDKGFVQV 342

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     SIP+TIVKSDGG+TYDTSDLAA++QR+ EEKAD I+YV D GQ VHF
Sbjct: 343 DDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAALKQRLFEEKADMIIYVVDSGQSVHF 401

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           +     TI G   +++  +    V R++H G     FG+++   + KF    T+S     
Sbjct: 402 Q-----TIFG--AAQMAGWYDPKVTRVSHAG-----FGVVLGEDKKKFK---TRSGETVR 446

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 447 LIDLLEEGLKR 457



 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/338 (59%), Positives = 238/338 (70%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 199 STIIGESMCRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 258

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F +IY  L+++L ER
Sbjct: 259 KESKKRFDTEEDFKKRAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNRIYGALDISLIER 318

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E KG                   L++ K  G             
Sbjct: 319 GESFYQDRMNDIVEEFEDKGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAALK 378

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+ AG  +P  TR+   GFGVVLGED+KKFK
Sbjct: 379 QRLFEEKADMIIYVVDSGQSVHFQTIFGAAQMAGWYDPKVTRVSHAGFGVVLGEDKKKFK 438

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 439 TRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRL 498

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 499 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 536



 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 454  GLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 513

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   L+ AAQ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 514  NTAAYLLYAFTRIRSIARLANIDEGMLQKAAQETKIILDHEKEWKLGRCILRFPEILQKI 573

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + G++  V+  R+LL EA A VM K 
Sbjct: 574  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGQVLKVNMWRMLLCEAVAAVMAKA 633

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 634  FDILGIKPVQRM 645



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 94/149 (63%), Gaps = 11/149 (7%)

Query: 4   PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
           P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + +I 
Sbjct: 54  PTKNMININSQLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQIL 110

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K NP +IA++I    T  L  N    + ++K+E A PGF+NV L + +  +Q+ +
Sbjct: 111 KTKEQKVNPREIAENI----TRHLPDN----ECVEKVEIAGPGFINVHLRKDFVSQQLTN 162

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGV+ P L +  +V+VDFSSPNIA++
Sbjct: 163 LLVNGVKLPALGEYKKVVVDFSSPNIAKE 191


>gi|440898441|gb|ELR49939.1| Arginyl-tRNA synthetase, cytoplasmic [Bos grunniens mutus]
          Length = 660

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/440 (50%), Positives = 304/440 (69%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P    +++   L +VF  A++ A+P L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKTMININSCLEEVFGCAIKAAYPVLENPPLIVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM +C++ K K +K NP +IA++I       L  N    + I+K+E+A PGF+N+ L +
Sbjct: 117 SAMGICQMLKTKEQKVNPREIAENI----VKHLPDN----EYIEKVEIAGPGFINIHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  +Q+ +++VNGV+ P++ +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ 
Sbjct: 169 GFVSQQLTNLLVNGVKIPSIGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G++V+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYNVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++F KIY+ L+++L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNKIYEALDISLIERGESFYQDRMHDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ +HF+     T+ G   ++++ +    V R++H G     FG+++   + KF   
Sbjct: 408 VDNGQSLHFQ-----TVFG--AAQMIGWYDPAVTRVSHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L    +E  KR
Sbjct: 454 -TRSGETVRLIDLLEEGLKR 472



 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/340 (58%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G++V+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMCRLFEFAGYNVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIY+ L+++L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNKIYEALDISLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMHDIVKEFEDRGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSLHFQTVFGAAQMIGWYDPAVTRVSHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTTEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  236 bits (601), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTTEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E LR AA  T + L+HEKE+ L + +LR  +VL  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEEMLRKAAHETEIILDHEKEWKLGRCILRFPEVLQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + G++  V+  R+LL EA A VM K 
Sbjct: 589  LDDLLLHTLCDYIYELATTFTEFYDSCYCVEKDRQSGEVLKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 94/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P +  +++   L +VF  A++ A+P L +    V  + +    KFGD+QCN AM +C+
Sbjct: 67  NKPTKTMININSCLEEVFGCAIKAAYPVLENPPLIVTPSQQP---KFGDYQCNSAMGICQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I       L  N    + I+K+E A PGF+N+ L + +  +Q+
Sbjct: 124 MLKTKEQKVNPREIAENI----VKHLPDN----EYIEKVEIAGPGFINIHLRKGFVSQQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            +++VNGV+ P++ +  +V+VDFSSPNIA++
Sbjct: 176 TNLLVNGVKIPSIGENKKVIVDFSSPNIAKE 206


>gi|157427804|ref|NP_001098808.1| arginine--tRNA ligase, cytoplasmic [Bos taurus]
 gi|300681170|sp|A7YW98.1|SYRC_BOVIN RecName: Full=Arginine--tRNA ligase, cytoplasmic; AltName:
           Full=Arginyl-tRNA synthetase; Short=ArgRS
 gi|157278917|gb|AAI34469.1| RARS protein [Bos taurus]
 gi|296485074|tpg|DAA27189.1| TPA: arginyl-tRNA synthetase [Bos taurus]
          Length = 660

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/440 (50%), Positives = 304/440 (69%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P    +++   L +VF  A++ A+P L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKTMININSCLEEVFGCAIKAAYPVLENPPLIVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM +C++ K K +K NP +IA++I       L  N    + I+K+E+A PGF+N+ L +
Sbjct: 117 SAMGICQMLKTKEQKVNPREIAENI----VKHLPDN----EYIEKVEIAGPGFINIHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  +Q+ +++VNGV+ P++ +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ 
Sbjct: 169 GFVSQQLTNLLVNGVKIPSIGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G++V+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYNVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++F KIY+ L+++L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNKIYEALDISLIERGESFYQDRMHDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ +HF+     T+ G   ++++ +    V R++H G     FG+++   + KF   
Sbjct: 408 VDNGQSLHFQ-----TVFG--AAQMIGWYDPAVTRVSHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L    +E  KR
Sbjct: 454 -TRSGETVRLIDLLEEGLKR 472



 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/340 (58%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G++V+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMCRLFEFAGYNVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIY+ L+++L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNKIYEALDISLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMHDIVKEFEDRGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSLHFQTVFGAAQMIGWYDPAVTRVSHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTTEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  236 bits (601), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTTEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E LR AA  T + L+HEKE+ L + +LR  +VL  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEEMLRKAAHETEIILDHEKEWKLGRCILRFPEVLQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + G++  V+  R+LL EA A VM K 
Sbjct: 589  LDDLLLHTLCDYIYELATTFTEFYDSCYCVEKDRQSGEVLKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 94/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P +  +++   L +VF  A++ A+P L +    V  + +    KFGD+QCN AM +C+
Sbjct: 67  NKPTKTMININSCLEEVFGCAIKAAYPVLENPPLIVTPSQQP---KFGDYQCNSAMGICQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I       L  N    + I+K+E A PGF+N+ L + +  +Q+
Sbjct: 124 MLKTKEQKVNPREIAENI----VKHLPDN----EYIEKVEIAGPGFINIHLRKGFVSQQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            +++VNGV+ P++ +  +V+VDFSSPNIA++
Sbjct: 176 TNLLVNGVKIPSIGENKKVIVDFSSPNIAKE 206


>gi|149726104|ref|XP_001503321.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic [Equus caballus]
          Length = 658

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/426 (52%), Positives = 297/426 (69%), Gaps = 27/426 (6%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ K K +
Sbjct: 72  ININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQMLKSKEQ 128

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L + +  EQ+  ++VNG
Sbjct: 129 KVNPREIAENI----TKHLPGN----ECIEKVEIAGPGFINVHLRKDFVSEQLTSLLVNG 180

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           VQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ G+DV+RLNH+GDWG
Sbjct: 181 VQLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNHLGDWG 240

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV LQ  +P
Sbjct: 241 TQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAYQCVVLLQSKNP 300

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           D  KAW++ICDVSR++F KIYD L+++L ERGESFYQ  M  +V   E +G +++DDGRK
Sbjct: 301 DITKAWKLICDVSRQEFNKIYDALDISLIERGESFYQDRMNDIVKEFEDRGFVQVDDGRK 360

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           I++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV D GQ VH +    
Sbjct: 361 IVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDNGQSVHLQ---- 415

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
            TI     ++++ +    V R++H G     FG+++   + KF    T+S     L    
Sbjct: 416 -TIFA--AAQMIGWYDPKVTRVSHAG-----FGVVLGEDKKKFK---TRSGETVRLIDLL 464

Query: 625 KESKKR 630
           +E  KR
Sbjct: 465 EEGLKR 470



 Score =  395 bits (1014), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/340 (58%), Positives = 238/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 212 STIIGESMCRLFEFAGYDVLRLNHLGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 271

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+++L ER
Sbjct: 272 KESKKRFDTEEEFKKRAYQCVVLLQSKNPDITKAWKLICDVSRQEFNKIYDALDISLIER 331

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 332 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 391

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VH + +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 392 QRLFEEKADMIIYVVDNGQSVHLQTIFAAAQMIGWYDPKVTRVSHAGFGVVLGEDKKKFK 451

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKL++K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 452 TRSGETVRLIDLLEEGLKRSMDKLREKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRL 511

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 512 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 551



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 145/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKL++K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 467  GLKRSMDKLREKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 526

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 527  NTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKIILDHEKEWKLGRCILRFPEILQKI 586

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 587  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 646

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 647  FDILGIKPVQRM 658



 Score =  109 bits (273), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 90/144 (62%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + ++ K K +
Sbjct: 72  ININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQMLKSKEQ 128

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+  ++VNG
Sbjct: 129 KVNPREIAENI----TKHLPGN----ECIEKVEIAGPGFINVHLRKDFVSEQLTSLLVNG 180

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           VQ P L +  +V+VDFSSPNIA++
Sbjct: 181 VQLPALGENKKVVVDFSSPNIAKE 204


>gi|326928305|ref|XP_003210321.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Meleagris
           gallopavo]
          Length = 648

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/431 (51%), Positives = 298/431 (69%), Gaps = 28/431 (6%)

Query: 201 VSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF- 259
           V   +++   L ++F  A+Q A+PEL +    V  + +    KFGD+QCN AM + +I  
Sbjct: 57  VKSMININSRLQEIFGAAIQAAYPELENPPLVVTPSQQP---KFGDYQCNSAMGITQILL 113

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K + +K +P +IA+ I    T  +  N    + I+K+E+A PGF+NV L + +  +Q+  
Sbjct: 114 KTREQKVSPREIAEKI----TKHIPAN----ECIEKVEIAGPGFINVHLRKDFVSKQLSS 165

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGVQPP + K+ RV++DFSSPNIAKEMHVGHLRSTIIG+++ RL E+ G+DV+RLNH
Sbjct: 166 LLVNGVQPPAIGKRKRVILDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNH 225

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           +GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESK+RFD +E FKKRAYQCVV L
Sbjct: 226 LGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKRRFDTEEEFKKRAYQCVVLL 285

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  DPD+ KAWE+ICDVSR++FQKIY+ L+VTLTERGESFYQ  M+ +V   E KG +++
Sbjct: 286 QSKDPDFIKAWELICDVSRKEFQKIYNCLDVTLTERGESFYQDMMKDIVKEFEDKGFVQV 345

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRK+++     S+P+TIVKSDGG+TYDTSDLAA+R R+ EEK D ++YV D GQ VH 
Sbjct: 346 DDGRKVVFVPG-FSVPLTIVKSDGGYTYDTSDLAALRHRLLEEKGDILIYVVDSGQSVHL 404

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           + +  +        +++ +    V R+ H       FG+++   + KF    T+S     
Sbjct: 405 QTVFAA-------GQMIGWYDPTVTRITHAA-----FGVVLGEDKKKFK---TRSGDAVR 449

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 450 LMDLLEEGLKR 460



 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 240/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 202 STIIGESMCRLFEFAGYDVLRLNHLGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 261

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK+RFD +E FKKRAYQCVV LQ  DPD+ KAWE+ICDVSR++FQKIY+ L+VTLTER
Sbjct: 262 KESKRRFDTEEEFKKRAYQCVVLLQSKDPDFIKAWELICDVSRKEFQKIYNCLDVTLTER 321

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 322 GESFYQDMMKDIVKEFEDKGFVQVDDGRKVVFVPGFSVPLTIVKSDGGYTYDTSDLAALR 381

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++YV D GQ VH + +    +  G  +P  TR+    FGVVLGED+KKFK
Sbjct: 382 HRLLEEKGDILIYVVDSGQSVHLQTVFAAGQMIGWYDPTVTRITHAAFGVVLGEDKKKFK 441

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGD V+L +LL+EGL+R++DKLKDK R   LTP EL  AQ +VA+GCIKYADLSHNR 
Sbjct: 442 TRSGDAVRLMDLLEEGLKRAMDKLKDKERDKVLTPEELKAAQVSVAFGCIKYADLSHNRL 501

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DYVFSFDKMLDDRGNTA YLLYA+TRI +IAR A I+ E
Sbjct: 502 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRAIARLANIDEE 541



 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 146/192 (76%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R++DKLKDK R   LTP EL  AQ +VA+GCIKYADLSHNR  DYVFSFDKMLDDRG
Sbjct: 457  GLKRAMDKLKDKERDKVLTPEELKAAQVSVAFGCIKYADLSHNRLNDYVFSFDKMLDDRG 516

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI +IAR A I+ E LR AA+   + L+HEKE+ L K +LR  ++L  +
Sbjct: 517  NTAAYLLYAFTRIRAIARLANIDEEMLRKAAREEALVLDHEKEWKLGKCILRFPEILQKI 576

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+YLY+++T F+EFYDNCYC+EKD + G+I  V+  RLLL EATA +M K 
Sbjct: 577  LDDLLLHTLCDYLYELATTFTEFYDNCYCVEKDRQSGQIVKVNMWRLLLCEATATIMAKG 636

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 637  FDILGIKPVERM 648



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 93/149 (62%), Gaps = 12/149 (8%)

Query: 5   VRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF- 63
           V+  +++   L ++F  A+Q A+PEL +    V  + +    KFGD+QCN AM + +I  
Sbjct: 57  VKSMININSRLQEIFGAAIQAAYPELENPPLVVTPSQQP---KFGDYQCNSAMGITQILL 113

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K + +K +P +IA+ I    T  +  N    + I+K+E A PGF+NV L + +  +Q+  
Sbjct: 114 KTREQKVSPREIAEKI----TKHIPAN----ECIEKVEIAGPGFINVHLRKDFVSKQLSS 165

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGVQPP + K+ RV++DFSSPNIA++
Sbjct: 166 LLVNGVQPPAIGKRKRVILDFSSPNIAKE 194


>gi|426231133|ref|XP_004009597.1| PREDICTED: arginine--tRNA ligase, cytoplasmic [Ovis aries]
          Length = 626

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/407 (52%), Positives = 292/407 (71%), Gaps = 20/407 (4%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF  A++ A+P L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMININSCLEEVFGCAIKAAYPVLENPPLIVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM +C++ K K +K NP +IA++I       L  N    + I+K+E+A PGF+N+ L +
Sbjct: 117 SAMGICQMLKTKEQKVNPREIAENI----VKHLPDN----EYIEKVEIAGPGFINIHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  +Q+ +++VNGV+ P + +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ 
Sbjct: 169 GFVSQQLTNLLVNGVKIPAIGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESVCRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G++V+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYNVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++F KIY+ L+++L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNKIYEALDISLVERGESFYQDKMHDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            D GQ +HF+     TI G   ++++ +   +V R++H G +G   G
Sbjct: 408 VDNGQSLHFQ-----TIFG--AAQMIGWYDPEVTRVSHAG-FGVVLG 446



 Score =  328 bits (842), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 175/340 (51%), Positives = 208/340 (61%), Gaps = 75/340 (22%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G++V+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESVCRLFEFAGYNVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIY+ L+++L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNKIYEALDISLVER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDKMHDIVKEFEDRGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+ +   A+  G  +P  TR+   GFGVVLGED+    
Sbjct: 394 QRLFEEKADMIIYVVDNGQSLHFQTIFGAAQMIGWYDPEVTRVSHAGFGVVLGEDK---- 449

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
                                           LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 450 ------------------------------LVLTTEELKAAQTSVAYGCIKYADLSHNRL 479

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 480 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 519



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/194 (56%), Positives = 139/194 (71%), Gaps = 8/194 (4%)

Query: 927  GYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
            G+G+    DKL        LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDD
Sbjct: 440  GFGVVLGEDKLV-------LTTEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDD 492

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
            RGNTA YLLYA+TRI SIAR A I+ E LR AA+ T + L+HEKE+ L + +LR  +VL 
Sbjct: 493  RGNTAAYLLYAFTRIRSIARLANIDEEMLRKAARETKIILDHEKEWKLGRCILRFPEVLQ 552

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMK 1105
             +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + G++  V+  R+LL EA A VM 
Sbjct: 553  KILDDLLLHTLCDYIYELATTFTEFYDSCYCVEKDRQSGEVLKVNMWRMLLCEAVAAVMA 612

Query: 1106 KCFDILNIRTVHKM 1119
            K FDIL I+ V +M
Sbjct: 613  KGFDILGIKPVQRM 626



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 94/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF  A++ A+P L +    V  + +    KFGD+QCN AM +C+
Sbjct: 67  NKPTKNMININSCLEEVFGCAIKAAYPVLENPPLIVTPSQQP---KFGDYQCNSAMGICQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I       L  N    + I+K+E A PGF+N+ L + +  +Q+
Sbjct: 124 MLKTKEQKVNPREIAENI----VKHLPDN----EYIEKVEIAGPGFINIHLRKGFVSQQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            +++VNGV+ P + +  +V+VDFSSPNIA++
Sbjct: 176 TNLLVNGVKIPAIGENKKVIVDFSSPNIAKE 206


>gi|196006025|ref|XP_002112879.1| hypothetical protein TRIADDRAFT_56467 [Trichoplax adhaerens]
 gi|190584920|gb|EDV24989.1| hypothetical protein TRIADDRAFT_56467 [Trichoplax adhaerens]
          Length = 668

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/415 (51%), Positives = 292/415 (70%), Gaps = 25/415 (6%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           +++  +  +F  A+  AFP++       +ST E+    FGD+QCN+AM L K+ K+ G+ 
Sbjct: 84  NIQKVVQGIFEQAIVKAFPDVSISAIVHSSTQER----FGDYQCNNAMILSKVLKENGKS 139

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
            +P    +S+A  +   L  N     V++K E+A PGF+N+ + + +    + DII+ GV
Sbjct: 140 LSP----RSVAEQIIQHLPAND----VLEKTEIAGPGFINITIKKHFILSLLSDIIMYGV 191

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
           +PP +N+K+RVLVDFSSPN+AKEMHVGHLRSTIIGD+ISRLLE++GHDVVR++H+GDWGT
Sbjct: 192 RPPVMNRKMRVLVDFSSPNVAKEMHVGHLRSTIIGDSISRLLEFVGHDVVRISHLGDWGT 251

Query: 386 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445
           QFGMLIAHL+D FP YL +SPPIADLQAFYK +K RFDED +FKKRAY+ VV LQ  + D
Sbjct: 252 QFGMLIAHLRDTFPKYLNQSPPIADLQAFYKAAKVRFDEDAVFKKRAYEAVVKLQARESD 311

Query: 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
           Y KAWEMICDVS+ +F+KIY RL V +  RGESFYQ  M  +V  L+ +GLLELD+GRKI
Sbjct: 312 YFKAWEMICDVSKNEFEKIYQRLGVKVVNRGESFYQDMMIDVVKDLDTRGLLELDEGRKI 371

Query: 506 MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEES 565
           +   +   +P+TIVKSDGGFTYDTSD+AA+RQR+ +EKADW++Y+TD GQG+HF ++  +
Sbjct: 372 LKVPNI-KVPLTIVKSDGGFTYDTSDMAAMRQRVMDEKADWLIYITDGGQGLHFEIIFSA 430

Query: 566 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  S  + Y+    VR+ HV      FG+++   + KF    T +  + DL
Sbjct: 431 -------SEAVGYVNRKHVRVVHV-----PFGVVLGEDKKKFKTRSTDTVRLVDL 473



 Score =  375 bits (962), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/350 (55%), Positives = 235/350 (67%), Gaps = 41/350 (11%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+ISRLLE++GHDVVR++H+GDWGTQFGMLIAHL+D FP YL +SPPIADLQAFY
Sbjct: 222 STIIGDSISRLLEFVGHDVVRISHLGDWGTQFGMLIAHLRDTFPKYLNQSPPIADLQAFY 281

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K +K RFDED +FKKRAY+ VV LQ  + DY KAWEMICDVS+ +F+KIY RL V +  R
Sbjct: 282 KAAKVRFDEDAVFKKRAYEAVVKLQARESDYFKAWEMICDVSKNEFEKIYQRLGVKVVNR 341

Query: 685 GESFYQKHMEQLVPYLEKKGNLSL------------------------------------ 708
           GESFYQ  M  +V  L+ +G L L                                    
Sbjct: 342 GESFYQDMMIDVVKDLDTRGLLELDEGRKILKVPNIKVPLTIVKSDGGFTYDTSDMAAMR 401

Query: 709 -----TKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                 K   ++Y+TD GQG+HF ++   ++  G +N    R+  V FGVVLGED+KKFK
Sbjct: 402 QRVMDEKADWLIYITDGGQGLHFEIIFSASEAVGYVNRKHVRVVHVPFGVVLGEDKKKFK 461

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRS DTV+L +LLDEG+RR+  KL DK R   L+  EL  A +AVAYGCIKYADLS NR 
Sbjct: 462 TRSTDTVRLVDLLDEGIRRAKAKLIDKGRDKVLSKEELEVAAKAVAYGCIKYADLSRNRT 521

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQS 873
            DY+FSFDKMLDD+GNTAVYLLYA TRI SIAR A ++S +  +   S S
Sbjct: 522 GDYIFSFDKMLDDKGNTAVYLLYALTRIRSIARLANVSSSELTKVAESAS 571



 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/192 (55%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G+RR+  KL DK R   L+  EL  A +AVAYGCIKYADLS NR  DY+FSFDKMLDD+G
Sbjct: 477  GIRRAKAKLIDKGRDKVLSKEELEVAAKAVAYGCIKYADLSRNRTGDYIFSFDKMLDDKG 536

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYA TRI SIAR A ++S +L   A+S  +  +H KE+ LAK +LR  ++L  +
Sbjct: 537  NTAVYLLYALTRIRSIARLANVSSSELTKVAESASIEFDHPKEWKLAKLILRFPEILEKI 596

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+++Y++S  F+EFYD CYCIEKD + G+I  ++  RL+L EATA +M+K 
Sbjct: 597  LDDLLLHPLCDFMYELSCTFTEFYDTCYCIEKDRKTGEILKINMNRLILCEATAMIMEKS 656

Query: 1108 FDILNIRTVHKM 1119
            F +L I  V KM
Sbjct: 657  FHLLGIDGVDKM 668



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 88/143 (61%), Gaps = 12/143 (8%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           +++  +  +F  A+  AFP++       +ST E+    FGD+QCN+AM L K+ K+ G+ 
Sbjct: 84  NIQKVVQGIFEQAIVKAFPDVSISAIVHSSTQER----FGDYQCNNAMILSKVLKENGKS 139

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
            +P    +S+A  +   L  N     V++K E A PGF+N+ + + +    + DII+ GV
Sbjct: 140 LSP----RSVAEQIIQHLPAND----VLEKTEIAGPGFINITIKKHFILSLLSDIIMYGV 191

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
           +PP +N+K+RVLVDFSSPN+A++
Sbjct: 192 RPPVMNRKMRVLVDFSSPNVAKE 214


>gi|405968921|gb|EKC33945.1| Arginyl-tRNA synthetase, cytoplasmic, partial [Crassostrea gigas]
          Length = 436

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/356 (57%), Positives = 266/356 (74%), Gaps = 14/356 (3%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +S+   + DVF  A++ AFP++ +    +  ++     KF D+QCN AM + KI K+KG+
Sbjct: 63  ISISSLVEDVFGLAIRKAFPDVDNPPVMIQGSS-----KFADYQCNSAMNIAKILKEKGQ 117

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP DIA  I   +          +   +K+EV  PGF+N+FL++ +  +Q+ +++  G
Sbjct: 118 GANPRDIADKIIQHLPQ--------SDYFEKVEVQGPGFINIFLNKEFVADQVGELLNRG 169

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           V+PP L  K R LVDFSSPNIAKEMHVGHLRSTIIG++I RLLE++GHDVVR+NH+GDWG
Sbjct: 170 VRPPRLGVKRRALVDFSSPNIAKEMHVGHLRSTIIGESICRLLEWVGHDVVRINHLGDWG 229

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHL+DKFP+Y   SPPI DLQAFYKESK RFD DE FKK+AY+ VV LQ +D 
Sbjct: 230 TQFGMLIAHLKDKFPNYKVVSPPIGDLQAFYKESKARFDSDEAFKKKAYEAVVQLQSYDK 289

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           D+  AW++ICDVSR++FQKIYDRL V++ ERGESFYQ+ M+ +V  LE+KG LELDDGRK
Sbjct: 290 DHINAWKLICDVSRKEFQKIYDRLGVSIIERGESFYQELMKDVVKLLEEKGKLELDDGRK 349

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           IM+     S+PMTIVKSDGGFTYDTSD+AAIR R+ +EKADW++YV D GQG H +
Sbjct: 350 IMFVPG-CSVPMTIVKSDGGFTYDTSDMAAIRHRLFDEKADWLIYVVDAGQGSHLQ 404



 Score =  243 bits (620), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 122/236 (51%), Positives = 152/236 (64%), Gaps = 41/236 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I RLLE++GHDVVR+NH+GDWGTQFGMLIAHL+DKFP+Y   SPPI DLQAFY
Sbjct: 201 STIIGESICRLLEWVGHDVVRINHLGDWGTQFGMLIAHLKDKFPNYKVVSPPIGDLQAFY 260

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD DE FKK+AY+ VV LQ +D D+  AW++ICDVSR++FQKIYDRL V++ ER
Sbjct: 261 KESKARFDSDEAFKKKAYEAVVQLQSYDKDHINAWKLICDVSRKEFQKIYDRLGVSIIER 320

Query: 685 GESFYQKHMEQLVPYLEKKGNLSL------------------------------------ 708
           GESFYQ+ M+ +V  LE+KG L L                                    
Sbjct: 321 GESFYQELMKDVVKLLEEKGKLELDDGRKIMFVPGCSVPMTIVKSDGGFTYDTSDMAAIR 380

Query: 709 -----TKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR 759
                 K   ++YV D GQG H + +   A+  G  N   TR++ V FGVVLGED+
Sbjct: 381 HRLFDEKADWLIYVVDAGQGSHLQQVFAAAEDLGWYNKKLTRVEHVAFGVVLGEDK 436



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 85/144 (59%), Gaps = 13/144 (9%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +S+   + DVF  A++ AFP++ +    +  ++     KF D+QCN AM + KI K+KG+
Sbjct: 63  ISISSLVEDVFGLAIRKAFPDVDNPPVMIQGSS-----KFADYQCNSAMNIAKILKEKGQ 117

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP DIA  I   +          +   +K+E   PGF+N+FL++ +  +Q+ +++  G
Sbjct: 118 GANPRDIADKIIQHLPQ--------SDYFEKVEVQGPGFINIFLNKEFVADQVGELLNRG 169

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           V+PP L  K R LVDFSSPNIA++
Sbjct: 170 VRPPRLGVKRRALVDFSSPNIAKE 193


>gi|241121693|ref|XP_002403306.1| arginyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215493415|gb|EEC03056.1| arginyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 662

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/404 (54%), Positives = 283/404 (70%), Gaps = 27/404 (6%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASV-ASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           S RD L  +F  AV+ AFP++ D    V  S+NEK    FGD+QCN AM L +  K  G+
Sbjct: 80  SPRDVLLKLFRQAVRAAFPDVEDPLVPVLPSSNEK----FGDYQCNAAMPLSQALKKAGK 135

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             +P ++A+ I + V +          V+ ++ +A PGF+NV LS  Y     + I+ +G
Sbjct: 136 PMSPVEVAKRIVAEVPAN--------DVVAEMSLAGPGFINVTLSGSYVAASARRILTDG 187

Query: 325 V-QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
           V  PP    + RV+VD SSPNIAKEMHVGHLRSTIIG+++SRLLE++GHDV+RLNHVGDW
Sbjct: 188 VLPPPQAGPRKRVIVDLSSPNIAKEMHVGHLRSTIIGESLSRLLEFVGHDVLRLNHVGDW 247

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGMLIAHL+D+FPDYL  SPPI DLQAFYKESK RFD DE FKKRAY CVV LQ  D
Sbjct: 248 GTQFGMLIAHLKDRFPDYLVHSPPIGDLQAFYKESKVRFDSDEEFKKRAYACVVKLQSHD 307

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
           PD   AW++ICDVSR++FQKIY+RL+V+L ERGESFYQ  M ++V  L+++G LE DDGR
Sbjct: 308 PDMMSAWKLICDVSRQEFQKIYERLDVSLIERGESFYQDMMTEVVKDLDERGFLEEDDGR 367

Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           K+M+G  +  +P+T+VKSDGGFTYDTSD+A IR R+++E+ADWIVYVTD GQ  HF    
Sbjct: 368 KVMFGPGQ-PVPLTVVKSDGGFTYDTSDMATIRHRVQQERADWIVYVTDAGQAQHF---- 422

Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
            +TI     ++   Y+    VRL+H       FG+++   + KF
Sbjct: 423 -NTIFA--CAKKAGYVDTSKVRLDH-----CVFGVVLGEDKKKF 458



 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/390 (56%), Positives = 266/390 (68%), Gaps = 55/390 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRLLE++GHDV+RLNHVGDWGTQFGMLIAHL+D+FPDYL  SPPI DLQAFY
Sbjct: 220 STIIGESLSRLLEFVGHDVLRLNHVGDWGTQFGMLIAHLKDRFPDYLVHSPPIGDLQAFY 279

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD DE FKKRAY CVV LQ  DPD   AW++ICDVSR++FQKIY+RL+V+L ER
Sbjct: 280 KESKVRFDSDEEFKKRAYACVVKLQSHDPDMMSAWKLICDVSRQEFQKIYERLDVSLIER 339

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M ++V  L+++G                   L++ K  G             
Sbjct: 340 GESFYQDMMTEVVKDLDERGFLEEDDGRKVMFGPGQPVPLTVVKSDGGFTYDTSDMATIR 399

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     IVYVTD GQ  HF  +  CAKKAG ++ +K R+D   FGVVLGED+KKFK
Sbjct: 400 HRVQQERADWIVYVTDAGQAQHFNTIFACAKKAGYVDTSKVRLDHCVFGVVLGEDKKKFK 459

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTVKL++LLDEGLRRSL KL +K R   LTP EL  AQ+AVAYGCIKYADLSHNR 
Sbjct: 460 TRSGDTVKLTDLLDEGLRRSLQKLHEKEREKVLTPEELKRAQEAVAYGCIKYADLSHNRV 519

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN-----SEDPPEPDPSQSEVEDR 878
            +YVFSFD+MLDDRGNTA YLLYA TRI SIAR  G++      E+ P   P + ++   
Sbjct: 520 HEYVFSFDRMLDDRGNTAAYLLYALTRIRSIARNVGMSVDALKDEEVPVEHPKERKL--- 576

Query: 879 CCPSHAKTHRKPPFTYTELIEQALKENGLC 908
                AKT  + P   + ++E+ L  + LC
Sbjct: 577 -----AKTLLRFPEVISTMLEE-LHVHPLC 600



 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 141/192 (73%), Gaps = 5/192 (2%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GLRRSL KL +K R   LTP EL  AQ+AVAYGCIKYADLSHNR  +YVFSFD+MLDDRG
Sbjct: 475  GLRRSLQKLHEKEREKVLTPEELKRAQEAVAYGCIKYADLSHNRVHEYVFSFDRMLDDRG 534

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA TRI SIAR  G++ + L+       V +EH KE  LAKTLLR  +V+  +
Sbjct: 535  NTAAYLLYALTRIRSIARNVGMSVDALK----DEEVPVEHPKERKLAKTLLRFPEVISTM 590

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKD-AEGKIKTVHTGRLLLAEATAKVMKKC 1107
              +L +H LC+YL+++S  FSEFYDNCYCIEKD A G++  V+ GRLLL EATA VM K 
Sbjct: 591  LEELHVHPLCDYLFELSQTFSEFYDNCYCIEKDKATGQVVKVNKGRLLLCEATAAVMTKG 650

Query: 1108 FDILNIRTVHKM 1119
            F IL I+TV +M
Sbjct: 651  FHILGIKTVERM 662



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 81/145 (55%), Gaps = 14/145 (9%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASV-ASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           S RD L  +F  AV+ AFP++ D    V  S+NEK    FGD+QCN AM L +  K  G+
Sbjct: 80  SPRDVLLKLFRQAVRAAFPDVEDPLVPVLPSSNEK----FGDYQCNAAMPLSQALKKAGK 135

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             +P ++A+ I + V +          V+ ++  A PGF+NV LS  Y     + I+ +G
Sbjct: 136 PMSPVEVAKRIVAEVPAN--------DVVAEMSLAGPGFINVTLSGSYVAASARRILTDG 187

Query: 129 V-QPPTLNKKLRVLVDFSSPNIARK 152
           V  PP    + RV+VD SSPNIA++
Sbjct: 188 VLPPPQAGPRKRVIVDLSSPNIAKE 212


>gi|346472213|gb|AEO35951.1| hypothetical protein [Amblyomma maculatum]
          Length = 664

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/417 (53%), Positives = 285/417 (68%), Gaps = 27/417 (6%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASV-ASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           S RD L  +F HAV+ AFPE+ D    V  S+NEK    FGD+QCN AM L +  K  G+
Sbjct: 80  SPRDTLLKLFVHAVRTAFPEIEDPFVPVLPSSNEK----FGDYQCNAAMPLSQALKKAGK 135

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             +P ++A+ I       LA  P+ ++VI +  +A PGF+NV L+  Y    +  I+  G
Sbjct: 136 PMSPIEVAKRI-------LAELPA-SEVIGETSLAGPGFINVTLNPTYVASSVHRILTEG 187

Query: 325 V-QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
           V  PP    K RV+VDFSSPNIAK+MHVGHLRSTIIG++I RLLE++GHDV+RLNHVGDW
Sbjct: 188 VLPPPQAGPKKRVIVDFSSPNIAKQMHVGHLRSTIIGESICRLLEFVGHDVLRLNHVGDW 247

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGMLIAHLQD+FPDYL  SPPI DLQAFYKESK RFD DE FKKRAY CVV LQ  D
Sbjct: 248 GTQFGMLIAHLQDRFPDYLVHSPPIGDLQAFYKESKVRFDSDEEFKKRAYACVVKLQSHD 307

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
            D   AW++ICDVSR++FQ IY+RL+ TL ERGESFYQ+ M ++V  L ++G LE D+GR
Sbjct: 308 QDMISAWKLICDVSRKEFQTIYERLDTTLIERGESFYQEMMGEVVKDLTERGFLEEDEGR 367

Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           K+M+  D  S+P+TIVKSDGG+TYDTSD+AA+R R+++EKADWIVYV D GQ  HF    
Sbjct: 368 KVMFA-DGMSVPLTIVKSDGGYTYDTSDMAALRHRVQQEKADWIVYVVDAGQAQHF---- 422

Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
            +T+          Y+    VRL+H       FG+++   + KF      +  +ADL
Sbjct: 423 -NTVFA--CGHKAGYVDTSKVRLDHCC-----FGVVLGEDKKKFKTRSGDTVKLADL 471



 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/338 (60%), Positives = 238/338 (70%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I RLLE++GHDV+RLNHVGDWGTQFGMLIAHLQD+FPDYL  SPPI DLQAFY
Sbjct: 220 STIIGESICRLLEFVGHDVLRLNHVGDWGTQFGMLIAHLQDRFPDYLVHSPPIGDLQAFY 279

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD DE FKKRAY CVV LQ  D D   AW++ICDVSR++FQ IY+RL+ TL ER
Sbjct: 280 KESKVRFDSDEEFKKRAYACVVKLQSHDQDMISAWKLICDVSRKEFQTIYERLDTTLIER 339

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ+ M ++V  L ++G                   L++ K  G             
Sbjct: 340 GESFYQEMMGEVVKDLTERGFLEEDEGRKVMFADGMSVPLTIVKSDGGYTYDTSDMAALR 399

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     IVYV D GQ  HF  +  C  KAG ++ +K R+D   FGVVLGED+KKFK
Sbjct: 400 HRVQQEKADWIVYVVDAGQAQHFNTVFACGHKAGYVDTSKVRLDHCCFGVVLGEDKKKFK 459

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTVKL++LLDEGL+RSL KL +K R   L+P EL  AQ+AVAYGCIKYADLSHNR 
Sbjct: 460 TRSGDTVKLADLLDEGLQRSLQKLHEKEREKVLSPEELKRAQEAVAYGCIKYADLSHNRI 519

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            +YVFSFD+MLDDRGNTA YLLYA TRI SIAR  G++
Sbjct: 520 HEYVFSFDRMLDDRGNTAAYLLYALTRIRSIARNVGLS 557



 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 141/192 (73%), Gaps = 3/192 (1%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RSL KL +K R   L+P EL  AQ+AVAYGCIKYADLSHNR  +YVFSFD+MLDDRG
Sbjct: 475  GLQRSLQKLHEKEREKVLSPEELKRAQEAVAYGCIKYADLSHNRIHEYVFSFDRMLDDRG 534

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA TRI SIAR  G++   L   +++  V +EH KE  LAK LLR  +VL  +
Sbjct: 535  NTAAYLLYALTRIRSIARNVGLSLNSL--MSENVTVPVEHPKERKLAKALLRFPEVLATM 592

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKD-AEGKIKTVHTGRLLLAEATAKVMKKC 1107
              +L LH LCEYL+++S  FSEFYDNCYCIEKD   G++ +++ GRLLL EATA +M K 
Sbjct: 593  LEELYLHPLCEYLFELSQTFSEFYDNCYCIEKDRTTGEVVSINKGRLLLCEATAAIMTKG 652

Query: 1108 FDILNIRTVHKM 1119
            F IL IRTV KM
Sbjct: 653  FFILGIRTVEKM 664



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 84/145 (57%), Gaps = 14/145 (9%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASV-ASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           S RD L  +F HAV+ AFPE+ D    V  S+NEK    FGD+QCN AM L +  K  G+
Sbjct: 80  SPRDTLLKLFVHAVRTAFPEIEDPFVPVLPSSNEK----FGDYQCNAAMPLSQALKKAGK 135

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             +P ++A+ I       LA  P+ ++VI +   A PGF+NV L+  Y    +  I+  G
Sbjct: 136 PMSPIEVAKRI-------LAELPA-SEVIGETSLAGPGFINVTLNPTYVASSVHRILTEG 187

Query: 129 V-QPPTLNKKLRVLVDFSSPNIARK 152
           V  PP    K RV+VDFSSPNIA++
Sbjct: 188 VLPPPQAGPKKRVIVDFSSPNIAKQ 212


>gi|345307895|ref|XP_001509403.2| PREDICTED: arginyl-tRNA synthetase, cytoplasmic [Ornithorhynchus
           anatinus]
          Length = 696

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/441 (50%), Positives = 303/441 (68%), Gaps = 28/441 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K   ++ N P    +++   L ++F +A++ A+P+L +   +V  + +    KFGD+QCN
Sbjct: 95  KSLQEERNKPTKSMININSRLQEIFGYAIKAAYPDLENPPLAVTPSQQ---SKFGDYQCN 151

Query: 251 DAMALCKIF-KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLS 309
            AM++ ++  K K +K +P +IA+ I    T  L  N      IDK+E+A PGF+NV LS
Sbjct: 152 SAMSITQMLQKTKEQKVSPREIAEKI----TKNLPDN----DYIDKVEIAGPGFINVHLS 203

Query: 310 RVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEY 369
           + +  +Q+ +++VNGVQPP L +  +V+VDFSSPNIAKEMHVGHLRSTIIGD++ RL E+
Sbjct: 204 KSFVSKQLTNLLVNGVQPPALGEIKKVVVDFSSPNIAKEMHVGHLRSTIIGDSMCRLFEF 263

Query: 370 LGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFK 429
           +G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FK
Sbjct: 264 VGYDVLRLNHLGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFK 323

Query: 430 KRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVP 489
           KRAYQCVV LQ   P+  KAW+MICDVSR++F KIYD L++++ ERGESFYQ  M  +V 
Sbjct: 324 KRAYQCVVLLQSKTPEITKAWKMICDVSRQEFNKIYDALDISIIERGESFYQDRMNDVVK 383

Query: 490 YLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
             E +G +E+DDGRKI++      +P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+Y
Sbjct: 384 EFEDRGFVEVDDGRKIVFVPG-CPVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANIIIY 442

Query: 550 VTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPD 609
           V D GQ VH + +  +       ++++ +      R+ H G     FG+++   + KF  
Sbjct: 443 VVDSGQSVHLQTVFAA-------AKMIGWYDPQETRVVHAG-----FGVVLGEDKKKFK- 489

Query: 610 YLTKSPPIADLQAFYKESKKR 630
             T+S     L    +E  KR
Sbjct: 490 --TRSGDTVRLIDLLEEGLKR 508



 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 240/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ RL E++G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 250 STIIGDSMCRLFEFVGYDVLRLNHLGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 309

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ   P+  KAW+MICDVSR++F KIYD L++++ ER
Sbjct: 310 KESKKRFDTEEEFKKRAYQCVVLLQSKTPEITKAWKMICDVSRQEFNKIYDALDISIIER 369

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 370 GESFYQDRMNDVVKEFEDRGFVEVDDGRKIVFVPGCPVPLTIVKSDGGYTYDTSDLAAIK 429

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VH + +   AK  G  +P +TR+   GFGVVLGED+KKFK
Sbjct: 430 QRLFEEKANIIIYVVDSGQSVHLQTVFAAAKMIGWYDPQETRVVHAGFGVVLGEDKKKFK 489

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+RS+DKLK+K R   LTP EL  AQ +VA+GCIKYADLSHNR 
Sbjct: 490 TRSGDTVRLIDLLEEGLKRSMDKLKEKERDKVLTPEELRTAQTSVAFGCIKYADLSHNRM 549

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 550 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 589



 Score =  244 bits (622), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 147/192 (76%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LTP EL  AQ +VA+GCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 505  GLKRSMDKLKEKERDKVLTPEELRTAQTSVAFGCIKYADLSHNRMNDYIFSFDKMLDDRG 564

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E LR AAQ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 565  NTAAYLLYAFTRIRSIARLANIDEEMLRKAAQETEILLDHEKEWKLGRCILRFPEILQKI 624

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EATA +M K 
Sbjct: 625  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKIVKVNMWRMLLCEATAAIMAKG 684

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 685  FDILGIKPVQRM 696



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 97/152 (63%), Gaps = 12/152 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P +  +++   L ++F +A++ A+P+L +   +V  + +    KFGD+QCN AM++ +
Sbjct: 102 NKPTKSMININSRLQEIFGYAIKAAYPDLENPPLAVTPSQQ---SKFGDYQCNSAMSITQ 158

Query: 62  IF-KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQ 120
           +  K K +K +P +IA+ I    T  L  N      IDK+E A PGF+NV LS+ +  +Q
Sbjct: 159 MLQKTKEQKVSPREIAEKI----TKNLPDN----DYIDKVEIAGPGFINVHLSKSFVSKQ 210

Query: 121 MKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           + +++VNGVQPP L +  +V+VDFSSPNIA++
Sbjct: 211 LTNLLVNGVQPPALGEIKKVVVDFSSPNIAKE 242


>gi|71895355|ref|NP_001025778.1| arginine--tRNA ligase, cytoplasmic [Gallus gallus]
 gi|82082785|sp|Q5ZM11.1|SYRC_CHICK RecName: Full=Arginine--tRNA ligase, cytoplasmic; AltName:
           Full=Arginyl-tRNA synthetase; Short=ArgRS
 gi|53127806|emb|CAG31232.1| hypothetical protein RCJMB04_3h11 [Gallus gallus]
          Length = 661

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/431 (50%), Positives = 298/431 (69%), Gaps = 28/431 (6%)

Query: 201 VSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF- 259
           V   +++   L ++F  A+Q A+PEL +    V  + +    KFGD+QCN AM + +I  
Sbjct: 70  VKSMININSRLQEIFGAAIQAAYPELENPPLVVTPSQQP---KFGDYQCNSAMGITQILL 126

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K K +K +P +IA+ I    T  +  N    + I+K+E+A PGF+NV L + +  +Q+  
Sbjct: 127 KTKEQKVSPREIAEKI----TKHIPAN----ECIEKVEIAGPGFINVHLRKDFVSKQLSS 178

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           ++VNGVQPP + K+ +V++DFSSPNIAKEMHVGHLRSTIIG+++ RL E+ G+DV+RLNH
Sbjct: 179 LLVNGVQPPAIGKRKKVILDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNH 238

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           +GDWGTQFGMLIAHLQD+FPDYLT SPPI DLQAFYKESK+RFD +E FKKRAYQCVV L
Sbjct: 239 LGDWGTQFGMLIAHLQDRFPDYLTVSPPIGDLQAFYKESKRRFDTEEEFKKRAYQCVVLL 298

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  DPD+ KAWE+ICDVSR++FQKIY+ L+VTLTERGESFYQ  M+ +V   E KG +++
Sbjct: 299 QSKDPDFIKAWELICDVSRKEFQKIYNCLDVTLTERGESFYQDMMKDIVKEFEDKGFVQV 358

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DDGRKI++     S+P+TI+KSDGG+TYDTSDLAA+R R+ EEK D ++YV D GQ VH 
Sbjct: 359 DDGRKIVFVPGF-SVPLTIMKSDGGYTYDTSDLAALRHRLLEEKGDILIYVVDSGQSVHL 417

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
           + +  +        +++ +    V R+ H       FG+++   + KF    T+S     
Sbjct: 418 QTVFAA-------GQMIGWYDPKVTRITHAA-----FGVVLGEDKKKFK---TRSGDTVR 462

Query: 620 LQAFYKESKKR 630
           L    +E  KR
Sbjct: 463 LMDLLEEGLKR 473



 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/338 (59%), Positives = 240/338 (71%), Gaps = 41/338 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G+DV+RLNH+GDWGTQFGMLIAHLQD+FPDYLT SPPI DLQAFY
Sbjct: 215 STIIGESMCRLFEFAGYDVLRLNHLGDWGTQFGMLIAHLQDRFPDYLTVSPPIGDLQAFY 274

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK+RFD +E FKKRAYQCVV LQ  DPD+ KAWE+ICDVSR++FQKIY+ L+VTLTER
Sbjct: 275 KESKRRFDTEEEFKKRAYQCVVLLQSKDPDFIKAWELICDVSRKEFQKIYNCLDVTLTER 334

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 335 GESFYQDMMKDIVKEFEDKGFVQVDDGRKIVFVPGFSVPLTIMKSDGGYTYDTSDLAALR 394

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++YV D GQ VH + +    +  G  +P  TR+    FGVVLGED+KKFK
Sbjct: 395 HRLLEEKGDILIYVVDSGQSVHLQTVFAAGQMIGWYDPKVTRITHAAFGVVLGEDKKKFK 454

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+R++DKLKDK R   LTP EL  AQ +VA+GCIKYADLSHNR 
Sbjct: 455 TRSGDTVRLMDLLEEGLKRAMDKLKDKERDKVLTPEELKAAQMSVAFGCIKYADLSHNRL 514

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DYVFSFDKMLDDRGNTA YLLYA+TRI +IAR A I+
Sbjct: 515 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRAIARLANID 552



 Score =  242 bits (618), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 146/192 (76%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R++DKLKDK R   LTP EL  AQ +VA+GCIKYADLSHNR  DYVFSFDKMLDDRG
Sbjct: 470  GLKRAMDKLKDKERDKVLTPEELKAAQMSVAFGCIKYADLSHNRLNDYVFSFDKMLDDRG 529

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI +IAR A I+   LR AA+   + L+HEKE+ L K +LR  ++L  +
Sbjct: 530  NTAAYLLYAFTRIRAIARLANIDEGMLRKAAREEVIVLDHEKEWKLGKCILRFPEILQKI 589

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+YLY+++T F+EFYDNCYC+EKD + G+I  V+T RLLL EATA +M K 
Sbjct: 590  LDDLLLHTLCDYLYELATTFTEFYDNCYCVEKDRQSGQIMKVNTWRLLLCEATATIMAKG 649

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 650  FDILGIKPVERM 661



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 93/149 (62%), Gaps = 12/149 (8%)

Query: 5   VRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF- 63
           V+  +++   L ++F  A+Q A+PEL +    V  + +    KFGD+QCN AM + +I  
Sbjct: 70  VKSMININSRLQEIFGAAIQAAYPELENPPLVVTPSQQP---KFGDYQCNSAMGITQILL 126

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
           K K +K +P +IA+ I    T  +  N    + I+K+E A PGF+NV L + +  +Q+  
Sbjct: 127 KTKEQKVSPREIAEKI----TKHIPAN----ECIEKVEIAGPGFINVHLRKDFVSKQLSS 178

Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++VNGVQPP + K+ +V++DFSSPNIA++
Sbjct: 179 LLVNGVQPPAIGKRKKVILDFSSPNIAKE 207


>gi|348574911|ref|XP_003473233.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Cavia
           porcellus]
          Length = 660

 Score =  431 bits (1108), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/440 (48%), Positives = 304/440 (69%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L ++F  A++ A+P L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAEKNKPTKNMININSCLQEIFGCAIKAAYPGLENPPLIVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K +P +IA++I   + +         + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKAKDQKVSPREIAENITKHLPN--------TEYIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  +Q+  +++NGVQ P + +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ 
Sbjct: 169 DFVSQQLTSLLLNGVQLPAIGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESVSRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+R+NHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ+FYKESKKRFD +E FKK
Sbjct: 229 GYDVLRINHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQSFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  DPD+ +AW++ICDVSR++F KIY+ L+++L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVRLQSKDPDFLQAWKLICDVSRQEFNKIYEALDISLIERGESFYQDRMPDVVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           LE++G +++DDGRKI++     SIP+TIVKSDGG+TYDTSD+AAI+QR+ EEKAD I+YV
Sbjct: 349 LEERGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDMAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ +HF+ +  +       ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDSGQAMHFQTVFAA-------AQMMGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L    +E  KR
Sbjct: 454 -TRSGETVRLIDLLEEGLKR 472



 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 244/340 (71%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+R+NHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ+FY
Sbjct: 214 STIIGESVSRLFEFAGYDVLRINHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQSFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  DPD+ +AW++ICDVSR++F KIY+ L+++L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVRLQSKDPDFLQAWKLICDVSRQEFNKIYEALDISLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V  LE++G                   L++ K  G             
Sbjct: 334 GESFYQDRMPDVVKELEERGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDMAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDSGQAMHFQTVFAAAQMMGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RSLDKLK+K R   LTP EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLIDLLEEGLKRSLDKLKEKERDKVLTPEELKAAQTSVAYGCIKYADLSHNRM 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  242 bits (617), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 146/192 (76%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RSLDKLK+K R   LTP EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSLDKLKEKERDKVLTPEELKAAQTSVAYGCIKYADLSHNRMNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E LR AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEEMLRKAARETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYDNCYC+EKD + G+I  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDNCYCVEKDRQTGEILKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            F+IL I+ V +M
Sbjct: 649  FEILGIKPVQRM 660



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 92/151 (60%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L ++F  A++ A+P L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMININSCLQEIFGCAIKAAYPGLENPPLIVTPSQQP---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K +P +IA++I   + +         + I+K+E A PGF+NV L + +  +Q+
Sbjct: 124 MLKAKDQKVSPREIAENITKHLPN--------TEYIEKVEIAGPGFINVHLRKDFVSQQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             +++NGVQ P + +  +V+VDFSSPNIA++
Sbjct: 176 TSLLLNGVQLPAIGENKKVIVDFSSPNIAKE 206


>gi|351708139|gb|EHB11058.1| Arginyl-tRNA synthetase, cytoplasmic [Heterocephalus glaber]
          Length = 660

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/433 (50%), Positives = 300/433 (69%), Gaps = 27/433 (6%)

Query: 198 NVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 257
           N P  + +++   L ++F  A++ A+P+L     +V  + +    +FGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQEIFGCAIKAAYPDLESPPLTVTPSQQP---RFGDYQCNSAMGISQ 123

Query: 258 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 317
           + K K +K NP +IA++I    T  L  N      I+K+E+A PGF+NV L + +  EQ+
Sbjct: 124 MLKAKDQKVNPREIAENI----TKHLPNN----DCIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 318 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
            +++VNG+Q P + +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+DV+R+
Sbjct: 176 TNLLVNGIQLPAVGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRI 235

Query: 378 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           NHVGDWGTQFGMLIAHLQDKFPDYLT SP I DLQ FYKESKKRFD +E FK+RAYQCVV
Sbjct: 236 NHVGDWGTQFGMLIAHLQDKFPDYLTVSPTIGDLQGFYKESKKRFDTEEEFKRRAYQCVV 295

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
            LQ  DPD  +AW++ICDVSR++F KIY+ L+++L ERGESFYQ  M  +V   E KG +
Sbjct: 296 RLQGKDPDITQAWKLICDVSRQEFNKIYEALDISLIERGESFYQDGMPLVVKEFEDKGFV 355

Query: 498 ELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGV 557
           ++DDGRKI++     SIP+TIVKSDGG+TYDTSD+AAI+QR+ EEKAD I+YV D GQ V
Sbjct: 356 QVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDMAAIKQRLFEEKADMIIYVVDNGQAV 414

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           HF+ +  +       ++++ +    V R++H G     FG+++   + KF    T+S   
Sbjct: 415 HFQTVFAA-------AQMIGWYDPKVTRVSHAG-----FGVVLGEDKKKFK---TRSGET 459

Query: 618 ADLQAFYKESKKR 630
             L    +E  KR
Sbjct: 460 VRLIDLLEEGLKR 472



 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/340 (58%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+R+NHVGDWGTQFGMLIAHLQDKFPDYLT SP I DLQ FY
Sbjct: 214 STIIGESMSRLFEFAGYDVLRINHVGDWGTQFGMLIAHLQDKFPDYLTVSPTIGDLQGFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FK+RAYQCVV LQ  DPD  +AW++ICDVSR++F KIY+ L+++L ER
Sbjct: 274 KESKKRFDTEEEFKRRAYQCVVRLQGKDPDITQAWKLICDVSRQEFNKIYEALDISLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDGMPLVVKEFEDKGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDMAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQAVHFQTVFAAAQMIGWYDPKVTRVSHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LTP EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTPEELKAAQTSVAYGCIKYADLSHNRM 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLASIDEE 553



 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 146/192 (76%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LTP EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTPEELKAAQTSVAYGCIKYADLSHNRMNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLASIDEEMLQKAARETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYDNCYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDNCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 94/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L ++F  A++ A+P+L     +V  + +    +FGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQEIFGCAIKAAYPDLESPPLTVTPSQQP---RFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N      I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKAKDQKVNPREIAENI----TKHLPNN----DCIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            +++VNG+Q P + +  +V+VDFSSPNIA++
Sbjct: 176 TNLLVNGIQLPAVGENKKVIVDFSSPNIAKE 206


>gi|346716348|ref|NP_001231189.1| arginine--tRNA ligase, cytoplasmic [Sus scrofa]
          Length = 660

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/440 (49%), Positives = 302/440 (68%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPSKNMINIISGLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+N+ L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKNLPDN----EYIEKVEIAGPGFINIHLKK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  +Q+ +++VNGVQ P +    +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ 
Sbjct: 169 SFVSQQLTNLLVNGVQLPAIGANKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+R+NHVGDWGTQFGMLIAHLQDKFPDYL  SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYDVLRINHVGDWGTQFGMLIAHLQDKFPDYLRVSPPIGDLQAFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++F KIY+ L+++L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQSKNPDILKAWKLICDVSRQEFSKIYEALDISLIERGESFYQDRMNDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++      +P+TIVKSDGG+TYDTSDLA I+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CPVPLTIVKSDGGYTYDTSDLATIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ +HF+      + G   ++++ +   +V R++H G     FG+++   + KF   
Sbjct: 408 VDSGQSLHFQ-----AVFG--AAQMMGWYDPEVTRVSHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L    +E  KR
Sbjct: 454 -TRSGETVRLIDLLEEGLKR 472



 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/340 (58%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+R+NHVGDWGTQFGMLIAHLQDKFPDYL  SPPI DLQAFY
Sbjct: 214 STIIGESMSRLFEFAGYDVLRINHVGDWGTQFGMLIAHLQDKFPDYLRVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIY+ L+++L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQSKNPDILKAWKLICDVSRQEFSKIYEALDISLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCPVPLTIVKSDGGYTYDTSDLATIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDSGQSLHFQAVFGAAQMMGWYDPEVTRVSHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 145/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  +VL  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKIILDHEKEWKLGRCILRFPEVLQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + G++  V+  RLLL +A A VM K 
Sbjct: 589  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGEVLKVNMWRLLLCKAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVQRM 660



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPSKNMINIISGLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+N+ L + +  +Q+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKNLPDN----EYIEKVEIAGPGFINIHLKKSFVSQQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            +++VNGVQ P +    +V+VDFSSPNIA++
Sbjct: 176 TNLLVNGVQLPAIGANKKVIVDFSSPNIAKE 206


>gi|357624515|gb|EHJ75259.1| putative arginyl-tRNA synthetase [Danaus plexippus]
          Length = 681

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/468 (48%), Positives = 307/468 (65%), Gaps = 30/468 (6%)

Query: 165 HDILISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFP 224
           H + I +   E E+  G S  +S +       +N  +   + + D L ++F  A+  A+P
Sbjct: 55  HRLAILQNAIEVERSVGSSKKTSKKRPNLLNDIN-SIEGTICILDELKNIFEIAITSAYP 113

Query: 225 ELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELA 284
           EL D    +  +      KFGD+QCN AM + ++ K K  K NP ++A +I     +++ 
Sbjct: 114 ELEDPPVVLTLSGNN--PKFGDYQCNSAMPISQLLKSKNIKTNPREVANNI----LNKMP 167

Query: 285 TNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPN 344
            +P    +I+K EVA  GF+N++L+R +A   +  I+  GV+PP + K+ R++VDFSSPN
Sbjct: 168 ASP----LIEKTEVAGAGFLNIYLNRAFAEHVLSCILRLGVKPPPV-KRERIIVDFSSPN 222

Query: 345 IAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 404
           IAKEMHVGHLRSTIIGD+I R LE+L HDV+RLNH+GDWGTQFGMLIAHLQDK+P++ T 
Sbjct: 223 IAKEMHVGHLRSTIIGDSICRALEFLDHDVLRLNHLGDWGTQFGMLIAHLQDKYPNFKTH 282

Query: 405 SPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKI 464
           SPPI+DLQAFYKESKKRFDEDE FKKRAY CVV LQ  DPDY  AW++IC+VSR++FQKI
Sbjct: 283 SPPISDLQAFYKESKKRFDEDEEFKKRAYSCVVKLQSGDPDYISAWKLICEVSRQEFQKI 342

Query: 465 YDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE--DRGSIPMTIVKSD 522
           YDRL++ + +RGESFYQ  ME++V  L+  G LE D+GR IMW +  +   IP+TIVKSD
Sbjct: 343 YDRLDIKIEDRGESFYQSRMEKIVKELKDGGYLEEDEGRLIMWSDPNNHDGIPLTIVKSD 402

Query: 523 GGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHD 582
           GG+TYDTSD+A IR R+EEEK D  +YVTD+GQ  HF L+E         +R    L  D
Sbjct: 403 GGYTYDTSDMATIRNRVEEEKGDRFIYVTDVGQYTHFVLIE-------ACARRFGIL-KD 454

Query: 583 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
             ++ HVG     FG+++   + KF    T+S     L     E  KR
Sbjct: 455 GKKIEHVG-----FGVVLGEDKKKFK---TRSGDTIKLIQLLDEGLKR 494



 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/343 (60%), Positives = 251/343 (73%), Gaps = 45/343 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I R LE+L HDV+RLNH+GDWGTQFGMLIAHLQDK+P++ T SPPI+DLQAFY
Sbjct: 234 STIIGDSICRALEFLDHDVLRLNHLGDWGTQFGMLIAHLQDKYPNFKTHSPPISDLQAFY 293

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY CVV LQ  DPDY  AW++IC+VSR++FQKIYDRL++ + +R
Sbjct: 294 KESKKRFDEDEEFKKRAYSCVVKLQSGDPDYISAWKLICEVSRQEFQKIYDRLDIKIEDR 353

Query: 685 GESFYQKHMEQLVPYLEKKG---------------------NLSLTKKLG---------- 713
           GESFYQ  ME++V  L+  G                      L++ K  G          
Sbjct: 354 GESFYQSRMEKIVKELKDGGYLEEDEGRLIMWSDPNNHDGIPLTIVKSDGGYTYDTSDMA 413

Query: 714 -------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 760
                         +YVTD+GQ  HF L+E CA++ GIL   K +++ VGFGVVLGED+K
Sbjct: 414 TIRNRVEEEKGDRFIYVTDVGQYTHFVLIEACARRFGILKDGK-KIEHVGFGVVLGEDKK 472

Query: 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH 820
           KFKTRSGDT+KL +LLDEGL+R+LDKL +K R   LTP EL +AQ+AVAYGCIKYADLSH
Sbjct: 473 KFKTRSGDTIKLIQLLDEGLKRALDKLVEKGRDKVLTPEELKQAQEAVAYGCIKYADLSH 532

Query: 821 NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           NR  DY+FSFDKMLDD+GNTAVYLLYA TRI SIARTA I+++
Sbjct: 533 NRINDYIFSFDKMLDDKGNTAVYLLYALTRIRSIARTAQISTD 575



 Score =  239 bits (610), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 143/191 (74%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R+LDKL +K R   LTP EL +AQ+AVAYGCIKYADLSHNR  DY+FSFDKMLDD+G
Sbjct: 491  GLKRALDKLVEKGRDKVLTPEELKQAQEAVAYGCIKYADLSHNRINDYIFSFDKMLDDKG 550

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYA TRI SIARTA I+++ L      +   L H+ E+ L K LLR  +V++ V
Sbjct: 551  NTAVYLLYALTRIRSIARTAQISTDKLLEEVHKSGFKLVHDAEWKLGKVLLRFPEVILKV 610

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
              DL LH LCEYLY+IS+AF++FYD CYC+EKD  G +  +   RL+L E TA+VM++C 
Sbjct: 611  ANDLYLHSLCEYLYEISSAFTDFYDKCYCVEKDKSGNVVKILYERLMLCEVTARVMERCL 670

Query: 1109 DILNIRTVHKM 1119
            DIL I+TV KM
Sbjct: 671  DILGIKTVSKM 681



 Score = 97.1 bits (240), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 13/165 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           + + D L ++F  A+  A+PEL D    +  +      KFGD+QCN AM + ++ K K  
Sbjct: 94  ICILDELKNIFEIAITSAYPELEDPPVVLTLSGNN--PKFGDYQCNSAMPISQLLKSKNI 151

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K NP ++A +I     +++  +P    +I+K E A  GF+N++L+R +A   +  I+  G
Sbjct: 152 KTNPREVANNI----LNKMPASP----LIEKTEVAGAGFLNIYLNRAFAEHVLSCILRLG 203

Query: 129 VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAI 173
           V+PP + K+ R++VDFSSPNIA++      HL S I    I +A+
Sbjct: 204 VKPPPV-KRERIIVDFSSPNIAKE--MHVGHLRSTIIGDSICRAL 245


>gi|344265245|ref|XP_003404695.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic [Loxodonta
           africana]
          Length = 660

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/433 (50%), Positives = 299/433 (69%), Gaps = 27/433 (6%)

Query: 198 NVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 257
           N P  + +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQ 123

Query: 258 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 317
           + + K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L + +  EQ+
Sbjct: 124 MLRTKEQKVNPREIAENI----TKHLPPN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 318 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
             ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ G+ V+RL
Sbjct: 176 TSLLVNGVQLPALGENKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYSVLRL 235

Query: 378 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           NH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY+ESKKRFD +E FK+RAYQCVV
Sbjct: 236 NHIGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYRESKKRFDTEEEFKRRAYQCVV 295

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
            LQ  + D  KAW++ICDVSR++F KIY+ L+++L ERGESFYQ  M  +V   E KG +
Sbjct: 296 LLQSKNLDIIKAWKLICDVSRQEFNKIYNALDISLIERGESFYQDRMNDVVKEFEDKGFV 355

Query: 498 ELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGV 557
           ++DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV D GQ +
Sbjct: 356 QVDDGRKIVFVPGY-SVPLTIVKSDGGYTYDTSDLAAIKQRLLEEKADMIIYVVDNGQSM 414

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           HF+     TI     ++++ +    V R++H G     FG+++   + KF    T+S   
Sbjct: 415 HFQ-----TIFA--AAQMIGWYDPKVTRVSHAG-----FGVVLGEDKKKFK---TRSGET 459

Query: 618 ADLQAFYKESKKR 630
             L    +E  KR
Sbjct: 460 VRLMDLLEEGLKR 472



 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/340 (57%), Positives = 238/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G+ V+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMCRLFEFAGYSVLRLNHIGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKKRFD +E FK+RAYQCVV LQ  + D  KAW++ICDVSR++F KIY+ L+++L ER
Sbjct: 274 RESKKRFDTEEEFKRRAYQCVVLLQSKNLDIIKAWKLICDVSRQEFNKIYNALDISLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E KG                   L++ K  G             
Sbjct: 334 GESFYQDRMNDVVKEFEDKGFVQVDDGRKIVFVPGYSVPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLLEEKADMIIYVVDNGQSMHFQTIFAAAQMIGWYDPKVTRVSHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL+EGL+RS+DKLK+K R   LTP EL  AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLEEGLKRSMDKLKEKERDKVLTPEELKAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLASIDDE 553



 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 146/192 (76%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LTP EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 469  GLKRSMDKLKEKERDKVLTPEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AAQ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 529  NTAAYLLYAFTRIRSIARLASIDDEMLQKAAQETKIILDHEKEWKLGRCILRFPEILQKI 588

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 589  LDDLLLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 648

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 649  FDILGIKPVERM 660



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 94/151 (62%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF  A++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQEVFGCAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + + K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLRTKEQKVNPREIAENI----TKHLPPN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVVVDFSSPNIAKE 206


>gi|328698469|ref|XP_001949420.2| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon
           pisum]
          Length = 592

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/434 (49%), Positives = 291/434 (67%), Gaps = 28/434 (6%)

Query: 197 MNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALC 256
           +NV     +++   L  +F+ A++ A+P L D      S   K    F D+QCN +M +C
Sbjct: 4   INVEEHAFINLHSILISLFSKAIKTAYPALEDFGKPAVSAGSK----FADYQCNASMQIC 59

Query: 257 KIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ 316
           K+ K KGE  +P        +VV  +L        +I+K++V+  GF+NV+LSR    + 
Sbjct: 60  KLLKAKGENVSP--------NVVAKKLVDCLGQCNIIEKVDVSGQGFINVWLSRNKLRDI 111

Query: 317 IKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 376
           ++ ++ N ++P  L    +++VDFS+PN+AKEMHVGHLRSTIIG+++SR+ E++GHDV+R
Sbjct: 112 LQYVLENKLKPKPLTNPQKIIVDFSAPNVAKEMHVGHLRSTIIGESLSRVFEFIGHDVLR 171

Query: 377 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 436
           +NH+GDWGTQFGMLIA LQDKFP+Y T+SPPI DLQ FYK+SK  FD D  FKKRAY CV
Sbjct: 172 INHIGDWGTQFGMLIALLQDKFPNYKTESPPIKDLQQFYKQSKVLFDSDLEFKKRAYDCV 231

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 496
           V LQ   PD+ +AW++ICDVSR++FQKIY+RLN+++ ERGESFYQ  ME +V  LE+KG 
Sbjct: 232 VKLQSMSPDHVQAWKLICDVSRKEFQKIYERLNISIIERGESFYQSRMETVVKDLEEKGF 291

Query: 497 LELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           LE DDGRKIMW  +  SIP+T+VKSDGGFTYDTSD+A ++QRIEEEKADWI+YV D GQ 
Sbjct: 292 LENDDGRKIMWSPE-SSIPLTVVKSDGGFTYDTSDIATLKQRIEEEKADWIIYVVDAGQS 350

Query: 557 VHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 616
           +HF  L++  I          +L    VR++ VG     FG+++   + KF    T+S  
Sbjct: 351 LHFETLKKCAIHSG-------FLDPSKVRMDFVG-----FGVVLGEDKKKFK---TRSGD 395

Query: 617 IADLQAFYKESKKR 630
              L +   E  KR
Sbjct: 396 TVRLASLLDEGIKR 409



 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/345 (57%), Positives = 245/345 (71%), Gaps = 41/345 (11%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SR+ E++GHDV+R+NH+GDWGTQFGMLIA LQDKFP+Y T+SPPI DLQ FY
Sbjct: 151 STIIGESLSRVFEFIGHDVLRINHIGDWGTQFGMLIALLQDKFPNYKTESPPIKDLQQFY 210

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K+SK  FD D  FKKRAY CVV LQ   PD+ +AW++ICDVSR++FQKIY+RLN+++ ER
Sbjct: 211 KQSKVLFDSDLEFKKRAYDCVVKLQSMSPDHVQAWKLICDVSRKEFQKIYERLNISIIER 270

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  ME +V  LE+KG                   L++ K  G             
Sbjct: 271 GESFYQSRMETVVKDLEEKGFLENDDGRKIMWSPESSIPLTVVKSDGGFTYDTSDIATLK 330

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF  L++CA  +G L+P+K RMDFVGFGVVLGED+KKFK
Sbjct: 331 QRIEEEKADWIIYVVDAGQSLHFETLKKCAIHSGFLDPSKVRMDFVGFGVVLGEDKKKFK 390

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L+ LLDEG++R+ DKL +K R   LT  EL  A+ A+AYGCIKYADL HNRN
Sbjct: 391 TRSGDTVRLASLLDEGIKRTRDKLVEKGRDKVLTDEELKLAETALAYGCIKYADLCHNRN 450

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
            DYVFSFDKMLDD+GNTAVYLLYA TRI SI    G  ++D  EP
Sbjct: 451 HDYVFSFDKMLDDKGNTAVYLLYALTRIRSIINNLGTYTQDLNEP 495



 Score =  232 bits (591), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 116/197 (58%), Positives = 145/197 (73%), Gaps = 6/197 (3%)

Query: 924  SLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            SL   G++R+ DKL +K R   LT  EL  A+ A+AYGCIKYADL HNRN DYVFSFDKM
Sbjct: 401  SLLDEGIKRTRDKLVEKGRDKVLTDEELKLAETALAYGCIKYADLCHNRNHDYVFSFDKM 460

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            LDD+GNTAVYLLYA TRI SI    G  ++DL     + P+SL+H+KE+ LAKTLLR  +
Sbjct: 461  LDDKGNTAVYLLYALTRIRSIINNLGTYTQDL-----NEPISLDHDKEWKLAKTLLRFPE 515

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAK 1102
            V+  +T D CLHHLCEYLYD++T FSEFYDNCYCIEK+ + G+I  V TGR+LL + TA+
Sbjct: 516  VISKITDDFCLHHLCEYLYDVATTFSEFYDNCYCIEKNPQTGEIVKVFTGRILLCKVTAE 575

Query: 1103 VMKKCFDILNIRTVHKM 1119
             M+   ++L I TV +M
Sbjct: 576  YMETGLNLLGISTVSRM 592



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 12/152 (7%)

Query: 1   MNVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALC 60
           +NV     +++   L  +F+ A++ A+P L D      S   K    F D+QCN +M +C
Sbjct: 4   INVEEHAFINLHSILISLFSKAIKTAYPALEDFGKPAVSAGSK----FADYQCNASMQIC 59

Query: 61  KIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQ 120
           K+ K KGE  +P        +VV  +L        +I+K++ +  GF+NV+LSR    + 
Sbjct: 60  KLLKAKGENVSP--------NVVAKKLVDCLGQCNIIEKVDVSGQGFINVWLSRNKLRDI 111

Query: 121 MKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++ ++ N ++P  L    +++VDFS+PN+A++
Sbjct: 112 LQYVLENKLKPKPLTNPQKIIVDFSAPNVAKE 143


>gi|328698412|ref|XP_001947348.2| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon
           pisum]
          Length = 592

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/434 (49%), Positives = 291/434 (67%), Gaps = 28/434 (6%)

Query: 197 MNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALC 256
           +NV     +++   L  +F++A++ A+P L D      S   K    F D+QCN +M +C
Sbjct: 4   VNVEEHAFINLHSILISLFSNAIKTAYPALEDFGKPAVSAGSK----FADYQCNASMQIC 59

Query: 257 KIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ 316
           K+ K KGE  +P        +VV  +L        +I+K++V+  GF+NV+LSR    + 
Sbjct: 60  KLLKAKGENVSP--------NVVAKKLVDCLGQCNIIEKVDVSGQGFINVWLSRNKLRDI 111

Query: 317 IKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 376
           ++ ++ N ++P  L    +++VDFS+PN+AKEMHVGHLRSTIIG+++SR+ E++GHDV+R
Sbjct: 112 LQYVLENKLKPKPLTNPQKIIVDFSAPNVAKEMHVGHLRSTIIGESLSRVFEFIGHDVLR 171

Query: 377 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 436
           +NH+GDWGTQFGMLIA LQDKFP+Y T+SPPI DLQ FYK+SK  FD D  FKKRAY CV
Sbjct: 172 INHIGDWGTQFGMLIALLQDKFPNYKTESPPIKDLQQFYKQSKVLFDSDLEFKKRAYDCV 231

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 496
           V LQ   PD+ +AW++ICDVSR++FQKIY+RLN+++ ERGESFYQ  ME +V  LE KG 
Sbjct: 232 VKLQSMSPDHVQAWKLICDVSRKEFQKIYERLNISIIERGESFYQSRMETVVKDLEDKGF 291

Query: 497 LELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           LE DDGRKIMW  +  SIP+T+VKSDGGFTYDTSD+A ++QRIEEEKADWI+YV D GQ 
Sbjct: 292 LENDDGRKIMWSPE-SSIPLTVVKSDGGFTYDTSDIATLKQRIEEEKADWIIYVVDAGQS 350

Query: 557 VHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 616
           +HF  L++  I          +L    VR++ VG     FG+++   + KF    T+S  
Sbjct: 351 LHFETLKKCAIHSG-------FLDPSKVRMDFVG-----FGVVLGEDKKKFK---TRSGD 395

Query: 617 IADLQAFYKESKKR 630
              L +   E  KR
Sbjct: 396 TVRLASLLDEGIKR 409



 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/344 (57%), Positives = 243/344 (70%), Gaps = 41/344 (11%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SR+ E++GHDV+R+NH+GDWGTQFGMLIA LQDKFP+Y T+SPPI DLQ FY
Sbjct: 151 STIIGESLSRVFEFIGHDVLRINHIGDWGTQFGMLIALLQDKFPNYKTESPPIKDLQQFY 210

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K+SK  FD D  FKKRAY CVV LQ   PD+ +AW++ICDVSR++FQKIY+RLN+++ ER
Sbjct: 211 KQSKVLFDSDLEFKKRAYDCVVKLQSMSPDHVQAWKLICDVSRKEFQKIYERLNISIIER 270

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  ME +V  LE KG                   L++ K  G             
Sbjct: 271 GESFYQSRMETVVKDLEDKGFLENDDGRKIMWSPESSIPLTVVKSDGGFTYDTSDIATLK 330

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +HF  L++CA  +G L+P+K RMDFVGFGVVLGED+KKFK
Sbjct: 331 QRIEEEKADWIIYVVDAGQSLHFETLKKCAIHSGFLDPSKVRMDFVGFGVVLGEDKKKFK 390

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L+ LLDEG++R+ DKL +K R   LT  EL  A+ A+AYGCIKYADL HNRN
Sbjct: 391 TRSGDTVRLASLLDEGIKRTRDKLVEKGRDKVLTDEELKLAETALAYGCIKYADLCHNRN 450

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
            DYVFSFDKMLDD+GNTAVYLLYA TRI SI    G  ++D  E
Sbjct: 451 HDYVFSFDKMLDDKGNTAVYLLYALTRIRSIINNLGTYTQDLNE 494



 Score =  229 bits (583), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 144/197 (73%), Gaps = 6/197 (3%)

Query: 924  SLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            SL   G++R+ DKL +K R   LT  EL  A+ A+AYGCIKYADL HNRN DYVFSFDKM
Sbjct: 401  SLLDEGIKRTRDKLVEKGRDKVLTDEELKLAETALAYGCIKYADLCHNRNHDYVFSFDKM 460

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            LDD+GNTAVYLLYA TRI SI    G  ++DL     +  +SL+H+KE+ LAKTLLR  +
Sbjct: 461  LDDKGNTAVYLLYALTRIRSIINNLGTYTQDL-----NESISLDHDKEWKLAKTLLRFPE 515

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAK 1102
            V+  +T D CLHHLCEYLYD++T FSEFYDNCYCIEK+ + G+I  V TGR+LL + TA+
Sbjct: 516  VISKITDDFCLHHLCEYLYDVATTFSEFYDNCYCIEKNPQTGEIVKVFTGRILLCKVTAE 575

Query: 1103 VMKKCFDILNIRTVHKM 1119
             M+   ++L I TV +M
Sbjct: 576  YMETGLNLLGISTVSRM 592



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 12/152 (7%)

Query: 1   MNVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALC 60
           +NV     +++   L  +F++A++ A+P L D      S   K    F D+QCN +M +C
Sbjct: 4   VNVEEHAFINLHSILISLFSNAIKTAYPALEDFGKPAVSAGSK----FADYQCNASMQIC 59

Query: 61  KIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQ 120
           K+ K KGE  +P        +VV  +L        +I+K++ +  GF+NV+LSR    + 
Sbjct: 60  KLLKAKGENVSP--------NVVAKKLVDCLGQCNIIEKVDVSGQGFINVWLSRNKLRDI 111

Query: 121 MKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++ ++ N ++P  L    +++VDFS+PN+A++
Sbjct: 112 LQYVLENKLKPKPLTNPQKIIVDFSAPNVAKE 143


>gi|402593822|gb|EJW87749.1| hypothetical protein WUBG_01338 [Wuchereria bancrofti]
          Length = 964

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/353 (57%), Positives = 266/353 (75%), Gaps = 16/353 (4%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           L  +F+ +V   +PE+   T  +  T  + V KFGD+Q N +M++ +     G+K +P +
Sbjct: 143 LRALFSESVSKLYPEMS--TIPILITEAQQV-KFGDYQFNSSMSIAQKLLRNGQKISPQE 199

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTL 330
           +A+ I       L   P   + I+K+EV+ PG++N+FL+R +    I +I + G++ P +
Sbjct: 200 VARKI-------LDNLPKCDR-IEKMEVSGPGYINIFLNRSWIATSITNIALKGIEVPVI 251

Query: 331 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 390
            K+ R LVDFSSPNIAK+MHVGHLRSTIIGD+ISRLL Y+G DV+RLNH+GDWGTQFGML
Sbjct: 252 EKR-RALVDFSSPNIAKQMHVGHLRSTIIGDSISRLLTYVGFDVLRLNHIGDWGTQFGML 310

Query: 391 IAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAW 450
           IAHLQD FP+++ + PPI+DLQAFYKESKKRFDEDE FK RAYQCV  LQ FDPD+ KAW
Sbjct: 311 IAHLQDCFPNFINEVPPISDLQAFYKESKKRFDEDEAFKARAYQCVTKLQSFDPDFVKAW 370

Query: 451 EMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIM-WGE 509
           +MICDVSR+DF +IYDRL++T+ ERGESFYQKHM +LV   +K G+LELD+GRKI+  GE
Sbjct: 371 QMICDVSRKDFSQIYDRLDITIVERGESFYQKHMVELVDEFDKLGVLELDEGRKILKLGE 430

Query: 510 DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
               +P+T+VKSDGGFTYDTSDLAA++ R+  +KADWI+YV D GQ +HF LL
Sbjct: 431 ---GVPLTVVKSDGGFTYDTSDLAALKYRLFVDKADWIIYVVDAGQSLHFELL 480



 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/340 (58%), Positives = 245/340 (72%), Gaps = 40/340 (11%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+ISRLL Y+G DV+RLNH+GDWGTQFGMLIAHLQD FP+++ + PPI+DLQAFY
Sbjct: 276 STIIGDSISRLLTYVGFDVLRLNHIGDWGTQFGMLIAHLQDCFPNFINEVPPISDLQAFY 335

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FK RAYQCV  LQ FDPD+ KAW+MICDVSR+DF +IYDRL++T+ ER
Sbjct: 336 KESKKRFDEDEAFKARAYQCVTKLQSFDPDFVKAWQMICDVSRKDFSQIYDRLDITIVER 395

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTK-----KLG-------------------------- 713
           GESFYQKHM +LV   +K G L L +     KLG                          
Sbjct: 396 GESFYQKHMVELVDEFDKLGVLELDEGRKILKLGEGVPLTVVKSDGGFTYDTSDLAALKY 455

Query: 714 ---------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKT 764
                    I+YV D GQ +HF LL    +K G  +P++ R++ V FG+VLGED+KKFKT
Sbjct: 456 RLFVDKADWIIYVVDAGQSLHFELLYAAGQKLGWYSPSEKRVELVTFGLVLGEDKKKFKT 515

Query: 765 RSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNL 824
           RSGD+V+L++LLDEG++R+  KL++K R   + P EL  A+ AVAYGC+KYADLS  R  
Sbjct: 516 RSGDSVRLTDLLDEGVKRAEAKLQEKERDKVMIPEELVLARDAVAYGCVKYADLSQTRTQ 575

Query: 825 DYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           DYVFSFD+MLDDRGNTAVYLLYA+ RI SI R +G++ ED
Sbjct: 576 DYVFSFDRMLDDRGNTAVYLLYAFARIQSICRNSGVSEED 615



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 89/131 (67%), Gaps = 3/131 (2%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++R+  KL++K R   + P EL  A+ AVAYGC+KYADLS  R  DYVFSFD+MLDDRG
Sbjct: 530  GVKRAEAKLQEKERDKVMIPEELVLARDAVAYGCVKYADLSQTRTQDYVFSFDRMLDDRG 589

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTP---VSLEHEKEFALAKTLLRMNDVL 1045
            NTAVYLLYA+ RI SI R +G++ ED+     S P   + LEH+ EF LAKT+L+  D +
Sbjct: 590  NTAVYLLYAFARIQSICRNSGVSEEDIHNYLHSLPNGLLPLEHKSEFRLAKTILKFTDCI 649

Query: 1046 MLVTRDLCLHH 1056
            +    +  LH 
Sbjct: 650  LNTLDNFLLHQ 660



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 12/138 (8%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           L  +F+ +V   +PE+   T  +  T  + V KFGD+Q N +M++ +     G+K +P +
Sbjct: 143 LRALFSESVSKLYPEMS--TIPILITEAQQV-KFGDYQFNSSMSIAQKLLRNGQKISPQE 199

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTL 134
           +A+ I       L   P   + I+K+E + PG++N+FL+R +    + +I + G++ P +
Sbjct: 200 VARKI-------LDNLPKCDR-IEKMEVSGPGYINIFLNRSWIATSITNIALKGIEVPVI 251

Query: 135 NKKLRVLVDFSSPNIARK 152
            K+ R LVDFSSPNIA++
Sbjct: 252 EKR-RALVDFSSPNIAKQ 268


>gi|449267240|gb|EMC78206.1| Arginyl-tRNA synthetase, cytoplasmic, partial [Columba livia]
          Length = 613

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/427 (49%), Positives = 295/427 (69%), Gaps = 28/427 (6%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF-KDKG 263
           +++   L ++F  A+Q A+P+L +    V  + +    KFGD+QCN AM + +I  K K 
Sbjct: 60  ININSCLQEIFGAAIQAAYPDLENPPLVVTPSQQP---KFGDYQCNSAMGITQILLKTKE 116

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
           +K +P +IA+ IA  + +         + I ++++A PGF+NV L + +  +Q++ +++N
Sbjct: 117 QKVSPREIAEKIAKNIPAN--------EYIAQVDIAGPGFINVHLRKDFVSKQLRSLLIN 168

Query: 324 GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
           GVQPP L K+ +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+ G+DV+RLNH+GDW
Sbjct: 169 GVQPPALGKRKKVVVDFSSPNIAKEMHVGHLRSTIIGESMGRLFEFAGYDVLRLNHLGDW 228

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV LQ  +
Sbjct: 229 GTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAYQCVVLLQSKN 288

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
           PD+ KAW++ICDVSR++FQKIY+ L++TL ERGESFY + M+ +V   E KG +++D GR
Sbjct: 289 PDFIKAWQLICDVSRKEFQKIYNCLDITLIERGESFYHEMMKDIVKEFEDKGFVQVDGGR 348

Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           KI++     S+P+TI KSDGG+TYDTSDLAA+R R+ EEKAD ++YV D GQ VH +   
Sbjct: 349 KIVFVPGF-SVPLTITKSDGGYTYDTSDLAALRHRLCEEKADILIYVVDSGQSVHLQ--- 404

Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 623
             T+      +++ +    V R+ H       FG+++   + KF    T+S     L   
Sbjct: 405 --TVFA--AGQMIGWYDPKVTRVAHAA-----FGVVLGEDKKKFK---TRSGDTVRLLDL 452

Query: 624 YKESKKR 630
            +E  KR
Sbjct: 453 LEEGLKR 459



 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/340 (57%), Positives = 241/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E+ G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 201 STIIGESMGRLFEFAGYDVLRLNHLGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 260

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD+ KAW++ICDVSR++FQKIY+ L++TL ER
Sbjct: 261 KESKKRFDTEEEFKKRAYQCVVLLQSKNPDFIKAWQLICDVSRKEFQKIYNCLDITLIER 320

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFY + M+ +V   E KG                   L++TK  G             
Sbjct: 321 GESFYHEMMKDIVKEFEDKGFVQVDGGRKIVFVPGFSVPLTITKSDGGYTYDTSDLAALR 380

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++YV D GQ VH + +    +  G  +P  TR+    FGVVLGED+KKFK
Sbjct: 381 HRLCEEKADILIYVVDSGQSVHLQTVFAAGQMIGWYDPKVTRVAHAAFGVVLGEDKKKFK 440

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+R++DKLKDK R   LTP EL  AQ ++A+GCIKYADLSHNR 
Sbjct: 441 TRSGDTVRLLDLLEEGLKRAMDKLKDKERDKVLTPEELKAAQTSIAFGCIKYADLSHNRL 500

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DYVFSFDKMLDDRGNTA YLLYA+TRI +IAR A ++ +
Sbjct: 501 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRAIARLASVDEQ 540



 Score =  208 bits (530), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/155 (61%), Positives = 122/155 (78%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R++DKLKDK R   LTP EL  AQ ++A+GCIKYADLSHNR  DYVFSFDKMLDDRG
Sbjct: 456  GLKRAMDKLKDKERDKVLTPEELKAAQTSIAFGCIKYADLSHNRLNDYVFSFDKMLDDRG 515

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI +IAR A ++ + LR AA+   ++L+HEKE+ L K +LR  ++L  +
Sbjct: 516  NTAAYLLYAFTRIRAIARLASVDEQMLRKAAREEVLTLDHEKEWKLGKCILRFPEILQKI 575

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE 1083
              DL LH LC+YLY+++T F+EFYDNCYC+EKD +
Sbjct: 576  LEDLLLHTLCDYLYELATTFTEFYDNCYCVEKDRQ 610



 Score =  107 bits (267), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 92/148 (62%), Gaps = 12/148 (8%)

Query: 6   RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF-K 64
           +  +++   L ++F  A+Q A+P+L +    V  + +    KFGD+QCN AM + +I  K
Sbjct: 57  KSMININSCLQEIFGAAIQAAYPDLENPPLVVTPSQQP---KFGDYQCNSAMGITQILLK 113

Query: 65  DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI 124
            K +K +P +IA+ IA  + +         + I +++ A PGF+NV L + +  +Q++ +
Sbjct: 114 TKEQKVSPREIAEKIAKNIPAN--------EYIAQVDIAGPGFINVHLRKDFVSKQLRSL 165

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++NGVQPP L K+ +V+VDFSSPNIA++
Sbjct: 166 LINGVQPPALGKRKKVVVDFSSPNIAKE 193


>gi|170584080|ref|XP_001896849.1| arginyl aa-tRNA synthetase protein 1, isoform b [Brugia malayi]
 gi|158595812|gb|EDP34311.1| arginyl aa-tRNA synthetase protein 1, isoform b, putative [Brugia
           malayi]
          Length = 732

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/388 (54%), Positives = 275/388 (70%), Gaps = 13/388 (3%)

Query: 178 KKQGISSSSSSQTKGTAKKMN-VPVSD-RMSVRDYLSDVFTHAVQVAFPELGDKTASVAS 235
           K  G  S+   +    +KK N V V D   S+   L  +F  +V   +PE+ D    +  
Sbjct: 108 KNDGDKSAGDKRPSKESKKYNYVIVKDFGSSLLCMLRAIFLESVSKLYPEMSDIPILITE 167

Query: 236 TNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDK 295
           T +    KFGD+Q N +M++ +     G+K +P    Q +A  +   L     + K I  
Sbjct: 168 TQQ---IKFGDYQFNSSMSIAQKLLRNGQKISP----QEVARKILDNLPECDRIEKAIKL 220

Query: 296 I-EVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHL 354
           I EV+ PG++N+FL+R +    I +I + G++ P + K+ RVLVDFSSPNIAK+MHVGHL
Sbjct: 221 IMEVSGPGYINIFLNRSWIATSITNIALKGIEVPVIEKR-RVLVDFSSPNIAKQMHVGHL 279

Query: 355 RSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 414
           RSTIIGD+ISRLL Y+G DV+RLNH+GDWGTQFGMLIAHLQD FP+++ + PPI+DLQAF
Sbjct: 280 RSTIIGDSISRLLTYVGFDVLRLNHIGDWGTQFGMLIAHLQDCFPNFINEVPPISDLQAF 339

Query: 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 474
           YKESKKRFDEDE FK RAYQCV  LQ FDPD+ KAW+MICDVSR+DF +IYDRL++ + E
Sbjct: 340 YKESKKRFDEDEAFKARAYQCVTKLQSFDPDFLKAWQMICDVSRKDFSQIYDRLDINIVE 399

Query: 475 RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           RGESFYQKHM +LV  L+K G+LELD+GRKI+   +   +P+T+VKSDGGFTYDTSDLAA
Sbjct: 400 RGESFYQKHMVELVEELDKLGVLELDEGRKILKLSE--GVPLTVVKSDGGFTYDTSDLAA 457

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           ++ R+  +KADWI+YV D GQ +HF LL
Sbjct: 458 LKYRLFVDKADWIIYVVDAGQSLHFELL 485



 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/340 (58%), Positives = 244/340 (71%), Gaps = 40/340 (11%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+ISRLL Y+G DV+RLNH+GDWGTQFGMLIAHLQD FP+++ + PPI+DLQAFY
Sbjct: 281 STIIGDSISRLLTYVGFDVLRLNHIGDWGTQFGMLIAHLQDCFPNFINEVPPISDLQAFY 340

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FK RAYQCV  LQ FDPD+ KAW+MICDVSR+DF +IYDRL++ + ER
Sbjct: 341 KESKKRFDEDEAFKARAYQCVTKLQSFDPDFLKAWQMICDVSRKDFSQIYDRLDINIVER 400

Query: 685 GESFYQKHMEQLVPYLEKKGNLSL---------------------------TKKLG---- 713
           GESFYQKHM +LV  L+K G L L                           T  L     
Sbjct: 401 GESFYQKHMVELVEELDKLGVLELDEGRKILKLSEGVPLTVVKSDGGFTYDTSDLAALKY 460

Query: 714 ---------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKT 764
                    I+YV D GQ +HF LL    +K G  +P++ R++ V FG+VLGED+KKFKT
Sbjct: 461 RLFVDKADWIIYVVDAGQSLHFELLYAAGQKLGWYSPSEKRVELVSFGLVLGEDKKKFKT 520

Query: 765 RSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNL 824
           RSGD+V+L++LLDEG++R+  KL++K R   + P EL+ A+ AVAYGC+KYADLS  R  
Sbjct: 521 RSGDSVRLTDLLDEGVKRAEAKLQEKERDKVMIPEELALARDAVAYGCVKYADLSQTRTQ 580

Query: 825 DYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           DYVFSFD+MLDDRGNTAVYLLYA+ RI SI R +G++ ED
Sbjct: 581 DYVFSFDRMLDDRGNTAVYLLYAFARIQSICRNSGVSEED 620



 Score =  203 bits (516), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 98/198 (49%), Positives = 133/198 (67%), Gaps = 7/198 (3%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++R+  KL++K R   + P EL+ A+ AVAYGC+KYADLS  R  DYVFSFD+MLDDRG
Sbjct: 535  GVKRAEAKLQEKERDKVMIPEELALARDAVAYGCVKYADLSQTRTQDYVFSFDRMLDDRG 594

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTP---VSLEHEKEFALAKTLLRMNDVL 1045
            NTAVYLLYA+ RI SI R +G++ ED+    QS P   + LEH+ EF LAKT+L+  D +
Sbjct: 595  NTAVYLLYAFARIQSICRNSGVSEEDIHNYLQSLPNGLLPLEHKSEFRLAKTILKFTDCI 654

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGK----IKTVHTGRLLLAEATA 1101
            +    +  LH LC+Y+Y ++T F +FY+ CY I+KD +G     I      RL+L + TA
Sbjct: 655  LNTLDNFLLHQLCDYVYSLATTFHDFYNECYVIQKDTDGMYFALISLAINTRLVLCKVTA 714

Query: 1102 KVMKKCFDILNIRTVHKM 1119
             +M  CF IL ++TV KM
Sbjct: 715  AIMADCFKILGLKTVEKM 732



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 9/139 (6%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           L  +F  +V   +PE+ D    +  T +    KFGD+Q N +M++ +     G+K +P  
Sbjct: 143 LRAIFLESVSKLYPEMSDIPILITETQQ---IKFGDYQFNSSMSIAQKLLRNGQKISP-- 197

Query: 75  IAQSIASVVTSELATNPSLAKVIDKI-EAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPT 133
             Q +A  +   L     + K I  I E + PG++N+FL+R +    + +I + G++ P 
Sbjct: 198 --QEVARKILDNLPECDRIEKAIKLIMEVSGPGYINIFLNRSWIATSITNIALKGIEVPV 255

Query: 134 LNKKLRVLVDFSSPNIARK 152
           + K+ RVLVDFSSPNIA++
Sbjct: 256 IEKR-RVLVDFSSPNIAKQ 273


>gi|1217668|gb|AAB35627.1| arginyl-tRNA synthetase [Homo sapiens]
          Length = 659

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/440 (50%), Positives = 295/440 (67%), Gaps = 27/440 (6%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K  + NP + A++I   +       P++  V+ ++E A PGF+N  L +
Sbjct: 117 SAMGISQMLKTKEPEVNPGEFAENITKHL-------PAM-DVLKRVEFAGPGFINGHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+ 
Sbjct: 169 DFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKK 288

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KA+ ++ DVSR++  KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 289 RAYQCVVLLQGKNPDITKAYLLMSDVSRQELNKIYDALDVSLIERGESFYQDRMNDIVKE 348

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 408 VDNGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 453

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E  KR
Sbjct: 454 -TRSGETVRLMDLLGEGLKR 472



 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/340 (58%), Positives = 236/340 (69%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 273

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KA+ ++ DVSR++  KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAYLLMSDVSRQELNKIYDALDVSLIER 333

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 334 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR 
Sbjct: 454 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRL 513

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 142/191 (74%), Gaps = 2/191 (1%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 465  LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKML 524

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L HEKE+ L + +LR  ++
Sbjct: 525  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLVHEKEWKLGRCILRFPEI 584

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++TAF+EFYD+CYC+EKD + GKI  V+  R +L E  A V
Sbjct: 585  LQKILDDLFLHTLCDYIYELATAFTEFYDSCYCVEKDRQTGKILKVNMWR-ILCETVAAV 643

Query: 1104 MKKCFDILNIR 1114
            M K FD L I+
Sbjct: 644  MAKGFDTLGIK 654



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 92/151 (60%), Gaps = 11/151 (7%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K  + NP + A++I   +       P++  V+ ++E A PGF+N  L + +  EQ+
Sbjct: 124 MLKTKEPEVNPGEFAENITKHL-------PAM-DVLKRVEFAGPGFINGHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             ++VNGVQ P L +  +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 206


>gi|291230340|ref|XP_002735133.1| PREDICTED: Arginyl-tRNA synthetase-like [Saccoglossus kowalevskii]
          Length = 666

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/413 (51%), Positives = 289/413 (69%), Gaps = 30/413 (7%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVA-STNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 269
           L+ VF  A++ A PEL D   +++ ST EK    FG++QCN AM + +  K  G KK+P 
Sbjct: 86  LNSVFEGAIKAAAPELADPPIAISLSTAEK----FGEYQCNSAMGISQQLKGLGIKKSPR 141

Query: 270 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT 329
           +IA++I           PS  ++I+K+E+A PGF+N+ L++ +   ++ +++V GV+PP 
Sbjct: 142 EIAETIVK------GLPPS--EMIEKVEIAGPGFINIHLTKSFVSHKLNELLVIGVRPPP 193

Query: 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
           + +K RV+VD SSPNIAKEMHVGHLRSTIIGD+ISRL E+LGHDV+RLNH+GDWGTQFGM
Sbjct: 194 IGRKKRVVVDMSSPNIAKEMHVGHLRSTIIGDSISRLYEFLGHDVLRLNHIGDWGTQFGM 253

Query: 390 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA 449
           LIAHL DKFP+Y+ +SPPI DLQ FYKESK RFD +E FKKRAY  VV LQ  +PD  KA
Sbjct: 254 LIAHLMDKFPNYVAESPPIGDLQDFYKESKIRFDNEEEFKKRAYSLVVKLQAKEPDITKA 313

Query: 450 WEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-- 507
           W +ICDVSRR+FQKIYDRL++ + ERGESFYQ  M   V  LE KG++E+DDGRK+++  
Sbjct: 314 WNLICDVSRREFQKIYDRLDIKIVERGESFYQDMMGDTVRALEAKGVVEVDDGRKVVFVP 373

Query: 508 GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTI 567
           G D   +P+T+VKSDGG TYDTSD+AA+  R+ +E AD I+YV D GQG+HF L+  +  
Sbjct: 374 GHD---VPLTVVKSDGGNTYDTSDMAALHHRLFDEHADVILYVVDAGQGLHFNLIFAA-- 428

Query: 568 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                 +L+ +      R+ H+G     FG+++   + KF     ++  +ADL
Sbjct: 429 -----GKLVGWYDPSSTRVEHIG-----FGVVLGEDKKKFKTRSGETIRLADL 471



 Score =  404 bits (1039), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 242/340 (71%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+ISRL E+LGHDV+RLNH+GDWGTQFGMLIAHL DKFP+Y+ +SPPI DLQ FY
Sbjct: 220 STIIGDSISRLYEFLGHDVLRLNHIGDWGTQFGMLIAHLMDKFPNYVAESPPIGDLQDFY 279

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD +E FKKRAY  VV LQ  +PD  KAW +ICDVSRR+FQKIYDRL++ + ER
Sbjct: 280 KESKIRFDNEEEFKKRAYSLVVKLQAKEPDITKAWNLICDVSRREFQKIYDRLDIKIVER 339

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M   V  LE KG                   L++ K  G             
Sbjct: 340 GESFYQDMMGDTVRALEAKGVVEVDDGRKVVFVPGHDVPLTVVKSDGGNTYDTSDMAALH 399

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQG+HF L+    K  G  +P+ TR++ +GFGVVLGED+KKFK
Sbjct: 400 HRLFDEHADVILYVVDAGQGLHFNLIFAAGKLVGWYDPSSTRVEHIGFGVVLGEDKKKFK 459

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+T++L++LL+EGL+RSL KLKDKNRH  LT  EL  AQ++VAYGCIKY+DLSHNR 
Sbjct: 460 TRSGETIRLADLLEEGLKRSLQKLKDKNRHEILTAEELKAAQESVAYGCIKYSDLSHNRV 519

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DYVFSFDKMLDD+GNTA YLLYA+TRI SIAR A I+ +
Sbjct: 520 NDYVFSFDKMLDDKGNTAAYLLYAFTRIRSIARLANIDRD 559



 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 148/192 (77%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RSL KLKDKNRH  LT  EL  AQ++VAYGCIKY+DLSHNR  DYVFSFDKMLDD+G
Sbjct: 475  GLKRSLQKLKDKNRHEILTAEELKAAQESVAYGCIKYSDLSHNRVNDYVFSFDKMLDDKG 534

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ + L+ AA++T V L+H KE+ L K LLR+ D+L+ V
Sbjct: 535  NTAAYLLYAFTRIRSIARLANIDRDTLKKAAETTAVDLDHPKEWKLGKCLLRLPDILLRV 594

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGK-IKTVHTGRLLLAEATAKVMKKC 1107
              DLC+H LC+YLY+IST F+EFYD+CYC+EKD + K I  V+  RLLL EATA VM+  
Sbjct: 595  LDDLCMHTLCDYLYEISTTFTEFYDHCYCVEKDRQTKEIIKVNMSRLLLCEATANVMECG 654

Query: 1108 FDILNIRTVHKM 1119
            F IL I  V KM
Sbjct: 655  FSILGINPVEKM 666



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 89/139 (64%), Gaps = 13/139 (9%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVA-STNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 73
           L+ VF  A++ A PEL D   +++ ST EK    FG++QCN AM + +  K  G KK+P 
Sbjct: 86  LNSVFEGAIKAAAPELADPPIAISLSTAEK----FGEYQCNSAMGISQQLKGLGIKKSPR 141

Query: 74  DIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPT 133
           +IA++I           PS  ++I+K+E A PGF+N+ L++ +   ++ +++V GV+PP 
Sbjct: 142 EIAETIVK------GLPPS--EMIEKVEIAGPGFINIHLTKSFVSHKLNELLVIGVRPPP 193

Query: 134 LNKKLRVLVDFSSPNIARK 152
           + +K RV+VD SSPNIA++
Sbjct: 194 IGRKKRVVVDMSSPNIAKE 212


>gi|321455642|gb|EFX66770.1| hypothetical protein DAPPUDRAFT_302451 [Daphnia pulex]
          Length = 632

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/430 (49%), Positives = 289/430 (67%), Gaps = 28/430 (6%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           L ++F  A++ AFP++ D    V ST       FGD+Q N AM+L K+ K  G+  NP +
Sbjct: 54  LEELFDSAIKKAFPDIKDFQVVVVSTTPN----FGDYQFNGAMSLSKLLKTLGKSLNPRE 109

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTL 330
           +A ++   V           +VI+ +++A PGF+N+ L   +  EQ+  ++  G++PP  
Sbjct: 110 VAAAVQKCVPPN--------EVIETLDLAGPGFINIKLKASFVQEQLSLLVTRGIRPPCG 161

Query: 331 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 390
            +K RV+VDFSSPNIAKEMHVGHLRSTIIGD+I RLLE+LGHDV+R+NHVGDWGTQFGML
Sbjct: 162 VEKKRVMVDFSSPNIAKEMHVGHLRSTIIGDSICRLLEFLGHDVLRINHVGDWGTQFGML 221

Query: 391 IAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAW 450
           +AHL+D+FP++  ++PPI DLQ+FYKESK RFD D  FKKRAY CVV LQ  DP Y K W
Sbjct: 222 LAHLEDRFPNFAEETPPIGDLQSFYKESKIRFDSDADFKKRAYACVVKLQSHDPVYIKGW 281

Query: 451 EMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED 510
           + ICDVSRR+FQKIYDRL++ + ERGESFYQ  M++ V  LE+ G+L+ D+GRK+M+   
Sbjct: 282 QAICDVSRREFQKIYDRLDIKIKERGESFYQDLMKKTVMLLEEAGVLKEDEGRKVMFAPG 341

Query: 511 RGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGD 570
             ++P+TIVKSDGG+TYDTSD+AAIRQR+ +E ADW+VYV DLGQ  HF      TI   
Sbjct: 342 I-AVPLTIVKSDGGYTYDTSDMAAIRQRVHDEAADWVVYVVDLGQSGHF-----ETIFA- 394

Query: 571 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
             +    +L     R+ HVG     FG+++   + KF    +++  + DL     E  +R
Sbjct: 395 -CAEFAGWLDRKKTRVEHVG-----FGVVLGEDRKKFKSRSSETVRLVDL---LDEGLRR 445

Query: 631 FDEDEIFKKR 640
             E  I K+R
Sbjct: 446 AKEKLIEKER 455



 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 243/340 (71%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I RLLE+LGHDV+R+NHVGDWGTQFGML+AHL+D+FP++  ++PPI DLQ+FY
Sbjct: 187 STIIGDSICRLLEFLGHDVLRINHVGDWGTQFGMLLAHLEDRFPNFAEETPPIGDLQSFY 246

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD D  FKKRAY CVV LQ  DP Y K W+ ICDVSRR+FQKIYDRL++ + ER
Sbjct: 247 KESKIRFDSDADFKKRAYACVVKLQSHDPVYIKGWQAICDVSRREFQKIYDRLDIKIKER 306

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M++ V  LE+ G                   L++ K  G             
Sbjct: 307 GESFYQDLMKKTVMLLEEAGVLKEDEGRKVMFAPGIAVPLTIVKSDGGYTYDTSDMAAIR 366

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     +VYV DLGQ  HF  +  CA+ AG L+  KTR++ VGFGVVLGEDRKKFK
Sbjct: 367 QRVHDEAADWVVYVVDLGQSGHFETIFACAEFAGWLDRKKTRVEHVGFGVVLGEDRKKFK 426

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           +RS +TV+L +LLDEGLRR+ +KL +K R   LTP EL  AQQAVAYGCIKY+DL+HNRN
Sbjct: 427 SRSSETVRLVDLLDEGLRRAKEKLIEKERDKVLTPEELESAQQAVAYGCIKYSDLAHNRN 486

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DYVFSFDKML+D+GNTAVYLLYAYTRI SIARTA +  E
Sbjct: 487 GDYVFSFDKMLEDKGNTAVYLLYAYTRIRSIARTANVTDE 526



 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 145/192 (75%), Gaps = 2/192 (1%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GLRR+ +KL +K R   LTP EL  AQQAVAYGCIKY+DL+HNRN DYVFSFDKML+D+G
Sbjct: 442  GLRRAKEKLIEKERDKVLTPEELESAQQAVAYGCIKYSDLAHNRNGDYVFSFDKMLEDKG 501

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYAYTRI SIARTA +  E ++ AA +  + L HEKE  LAK LLR  + ++ +
Sbjct: 502  NTAVYLLYAYTRIRSIARTANVTDEQIKKAA-ADGIPLSHEKEMKLAKLLLRFPETIVRL 560

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKD-AEGKIKTVHTGRLLLAEATAKVMKKC 1107
            T DLCLH LCE+LY++ST F+EFYD CYC+EKD   G+I  ++  R+ L EATA VM +C
Sbjct: 561  TFDLCLHPLCEFLYEVSTTFTEFYDVCYCVEKDRTTGQIVHINMDRMALCEATANVMAQC 620

Query: 1108 FDILNIRTVHKM 1119
            F +L ++ + KM
Sbjct: 621  FSLLGLKPIQKM 632



 Score = 94.7 bits (234), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 12/138 (8%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           L ++F  A++ AFP++ D    V ST       FGD+Q N AM+L K+ K  G+  NP +
Sbjct: 54  LEELFDSAIKKAFPDIKDFQVVVVSTTPN----FGDYQFNGAMSLSKLLKTLGKSLNPRE 109

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTL 134
           +A ++   V           +VI+ ++ A PGF+N+ L   +  EQ+  ++  G++PP  
Sbjct: 110 VAAAVQKCVPPN--------EVIETLDLAGPGFINIKLKASFVQEQLSLLVTRGIRPPCG 161

Query: 135 NKKLRVLVDFSSPNIARK 152
            +K RV+VDFSSPNIA++
Sbjct: 162 VEKKRVMVDFSSPNIAKE 179


>gi|449475219|ref|XP_002189938.2| PREDICTED: arginine--tRNA ligase, cytoplasmic [Taeniopygia guttata]
          Length = 617

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/427 (48%), Positives = 294/427 (68%), Gaps = 28/427 (6%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF-KDKG 263
           +++   L ++F  A+Q A+P+L +    V  + +    KFGD+QCN AM + ++  K + 
Sbjct: 64  ININSCLQEIFGAAIQAAYPDLENPPLVVTPSQQP---KFGDYQCNSAMGISQVLLKTRE 120

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
           +K +P +IA+ I   + +         + I+K+E+A PGF+NV L + +  +Q+  +++N
Sbjct: 121 QKVSPREIAEKIVKSIPAN--------ECIEKVEIAGPGFINVHLRKDFVSKQLSSLLIN 172

Query: 324 GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
           GVQPP + K+ +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E++G+DV+RLNH+GDW
Sbjct: 173 GVQPPAIGKRKKVVVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFVGYDVLRLNHLGDW 232

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGMLIAHLQDKFPDYL+ SPPI DLQAFYKESK+RFD +E FKKRAYQCVV LQ  +
Sbjct: 233 GTQFGMLIAHLQDKFPDYLSVSPPIGDLQAFYKESKQRFDTEEEFKKRAYQCVVLLQSKN 292

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
           PD+ KAW +ICDVSRR+FQKIY+ L++TL ERGESFY + M+ +V   E KG +++DDGR
Sbjct: 293 PDFIKAWNLICDVSRREFQKIYNCLDITLIERGESFYHEMMKDIVKEFEDKGFVQVDDGR 352

Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           K+++      +P+TI+KSDGGFTYDTSDLAA++ R+ EEK D ++YV D GQ VH + + 
Sbjct: 353 KVVFVPG-FPVPLTIMKSDGGFTYDTSDLAALKHRLCEEKGDILIYVVDSGQSVHLQTVF 411

Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 623
            +        +++ +    V R+ H       FG+++   + KF    T+S     L   
Sbjct: 412 AA-------GQMIGWYDPKVTRVAHAA-----FGVVLGEDKKKFK---TRSGDTVRLIDL 456

Query: 624 YKESKKR 630
            +E  KR
Sbjct: 457 LEEGLKR 463



 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/340 (57%), Positives = 240/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RL E++G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYL+ SPPI DLQAFY
Sbjct: 205 STIIGESMCRLFEFVGYDVLRLNHLGDWGTQFGMLIAHLQDKFPDYLSVSPPIGDLQAFY 264

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK+RFD +E FKKRAYQCVV LQ  +PD+ KAW +ICDVSRR+FQKIY+ L++TL ER
Sbjct: 265 KESKQRFDTEEEFKKRAYQCVVLLQSKNPDFIKAWNLICDVSRREFQKIYNCLDITLIER 324

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFY + M+ +V   E KG                   L++ K  G             
Sbjct: 325 GESFYHEMMKDIVKEFEDKGFVQVDDGRKVVFVPGFPVPLTIMKSDGGFTYDTSDLAALK 384

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++YV D GQ VH + +    +  G  +P  TR+    FGVVLGED+KKFK
Sbjct: 385 HRLCEEKGDILIYVVDSGQSVHLQTVFAAGQMIGWYDPKVTRVAHAAFGVVLGEDKKKFK 444

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+R++DKLKDK R   LTP EL  AQ +VA+GCIKYADLSHNR 
Sbjct: 445 TRSGDTVRLIDLLEEGLKRAMDKLKDKERDKVLTPEELKAAQTSVAFGCIKYADLSHNRL 504

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DYVFSFDKMLDDRGNTA YLLYA+TRI +IAR A I+ +
Sbjct: 505 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRAIARLANIDEQ 544



 Score =  204 bits (520), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/155 (61%), Positives = 121/155 (78%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R++DKLKDK R   LTP EL  AQ +VA+GCIKYADLSHNR  DYVFSFDKMLDDRG
Sbjct: 460  GLKRAMDKLKDKERDKVLTPEELKAAQTSVAFGCIKYADLSHNRLNDYVFSFDKMLDDRG 519

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI +IAR A I+ + L+ AA+   + L+HEKE+ L K +LR  ++L  +
Sbjct: 520  NTAAYLLYAFTRIRAIARLANIDEQMLQKAAREEVLVLDHEKEWKLGKCILRFPEILQKI 579

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE 1083
              DL LH LC+YLY+++T F+EFYD+CYC+EKD +
Sbjct: 580  LEDLLLHTLCDYLYELATTFTEFYDSCYCVEKDRQ 614



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 91/148 (61%), Gaps = 12/148 (8%)

Query: 6   RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF-K 64
           +  +++   L ++F  A+Q A+P+L +    V  + +    KFGD+QCN AM + ++  K
Sbjct: 61  KSMININSCLQEIFGAAIQAAYPDLENPPLVVTPSQQP---KFGDYQCNSAMGISQVLLK 117

Query: 65  DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI 124
            + +K +P +IA+ I   + +         + I+K+E A PGF+NV L + +  +Q+  +
Sbjct: 118 TREQKVSPREIAEKIVKSIPAN--------ECIEKVEIAGPGFINVHLRKDFVSKQLSSL 169

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++NGVQPP + K+ +V+VDFSSPNIA++
Sbjct: 170 LINGVQPPAIGKRKKVVVDFSSPNIAKE 197


>gi|340369649|ref|XP_003383360.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Amphimedon
           queenslandica]
          Length = 435

 Score =  417 bits (1073), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/402 (51%), Positives = 270/402 (67%), Gaps = 24/402 (5%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           +VR  ++ +F  A+   +P      A + ++  +   +FGD++C  AM L    K  GE 
Sbjct: 3   NVRSVITAIFRTALCKCYPSFNTTRAIIQASGAE---RFGDYKCVAAMPLANTLKQSGEV 59

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
            +P D+AQ I       L   PS   VI+K EVA PGF+NV++ R Y  E + DI+V GV
Sbjct: 60  LSPRDVAQKI-------LNNLPSTPFVIEKCEVAGPGFINVYVKRSYISELVSDILVKGV 112

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
           +PP + +KLRV+VDFSSPN+AKEMHVGHLRSTIIG+TI RLLE+ GHDV+RLNHVGDWGT
Sbjct: 113 RPPPVERKLRVIVDFSSPNVAKEMHVGHLRSTIIGETICRLLEFFGHDVLRLNHVGDWGT 172

Query: 386 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445
           QFGMLIAHLQD+FPDY T SPPI DLQ FY+ESKKRFD DE FKKRAY CVV LQ  DP+
Sbjct: 173 QFGMLIAHLQDQFPDYSTVSPPIGDLQKFYRESKKRFDNDENFKKRAYNCVVKLQGNDPE 232

Query: 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
             +AW++ICDVSR++F  IYDRL V   ERGESFY+  M  +V  L  KGL  ++DG  +
Sbjct: 233 VHQAWKLICDVSRKEFLLIYDRLGVKNQERGESFYEPMMPGIVKDLRGKGLAVIEDGATV 292

Query: 506 MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEES 565
           M    +  +P+ + KSDG  TYDTSD+AA+R RIEEEK DW++YV D GQG+HF  + E 
Sbjct: 293 MHIPGK-LVPLMLAKSDGAHTYDTSDMAALRHRIEEEKGDWLIYVVDAGQGLHFETVFEG 351

Query: 566 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
             +   ++        D VR++HVG     FG+++   + K 
Sbjct: 352 GCMAGYVA--------DGVRIDHVG-----FGVVLGEDKKKL 380



 Score =  283 bits (724), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 150/269 (55%), Positives = 176/269 (65%), Gaps = 42/269 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+TI RLLE+ GHDV+RLNHVGDWGTQFGMLIAHLQD+FPDY T SPPI DLQ FY
Sbjct: 143 STIIGETICRLLEFFGHDVLRLNHVGDWGTQFGMLIAHLQDQFPDYSTVSPPIGDLQKFY 202

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKKRFD DE FKKRAY CVV LQ  DP+  +AW++ICDVSR++F  IYDRL V   ER
Sbjct: 203 RESKKRFDNDENFKKRAYNCVVKLQGNDPEVHQAWKLICDVSRKEFLLIYDRLGVKNQER 262

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFY+  M  +V  L  KG                   L L K  G             
Sbjct: 263 GESFYEPMMPGIVKDLRGKGLAVIEDGATVMHIPGKLVPLMLAKSDGAHTYDTSDMAALR 322

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++YV D GQG+HF  + E    AG +  +  R+D VGFGVVLGED+KK K
Sbjct: 323 HRIEEEKGDWLIYVVDAGQGLHFETVFEGGCMAGYV-ADGVRIDHVGFGVVLGEDKKKLK 381

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNR 792
           TRSGDTV+L +LLDEGL RSL++LK+K R
Sbjct: 382 TRSGDTVRLKDLLDEGLERSLERLKEKGR 410



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 10/143 (6%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           +VR  ++ +F  A+   +P      A + ++  +   +FGD++C  AM L    K  GE 
Sbjct: 3   NVRSVITAIFRTALCKCYPSFNTTRAIIQASGAE---RFGDYKCVAAMPLANTLKQSGEV 59

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
            +P D+AQ I       L   PS   VI+K E A PGF+NV++ R Y  E + DI+V GV
Sbjct: 60  LSPRDVAQKI-------LNNLPSTPFVIEKCEVAGPGFINVYVKRSYISELVSDILVKGV 112

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
           +PP + +KLRV+VDFSSPN+A++
Sbjct: 113 RPPPVERKLRVIVDFSSPNVAKE 135


>gi|387014662|gb|AFJ49450.1| Arginyl-tRNA synthetase, cytoplasmic-like [Crotalus adamanteus]
          Length = 663

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/361 (55%), Positives = 267/361 (73%), Gaps = 14/361 (3%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF-KDKGEKKNPF 269
           + ++F  A++ A+P+L     +V  + +    +FGD+QCN AM++ ++  K K +K +P 
Sbjct: 82  IQELFKAAIKAAYPDLESPPLAVTPSQQS---RFGDYQCNSAMSISQLLLKTKEQKVSPR 138

Query: 270 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT 329
           DIA  IA  +           + I+K E+A PGF+NV L + +   Q+  +++NGVQPP 
Sbjct: 139 DIADKIARNIPDN--------ECIEKTEIAGPGFINVHLKKDFVSGQLSSMLMNGVQPPA 190

Query: 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
             ++ +V++DFSSPNIAKEMHVGHLRSTIIGD++ RL E++GHDV+RLNH+GDWGTQFGM
Sbjct: 191 AGERKKVVIDFSSPNIAKEMHVGHLRSTIIGDSMCRLFEFMGHDVLRLNHLGDWGTQFGM 250

Query: 390 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA 449
           LIAHLQDKFPDYLT SPPI DLQAFYKESK+RFD +E FKK AY CVV LQ   PD  KA
Sbjct: 251 LIAHLQDKFPDYLTVSPPIGDLQAFYKESKRRFDTEEEFKKHAYHCVVLLQSKSPDIIKA 310

Query: 450 WEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE 509
           W +ICDVSR++FQKIYD L+V++ +RGES+YQ  M  +V  LE+KG++++DDGRKI++  
Sbjct: 311 WNLICDVSRKEFQKIYDCLDVSIIDRGESYYQDRMHGIVKELEEKGVVQVDDGRKIVFVP 370

Query: 510 DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR-LLEESTII 568
              S+P+TIVKSDGGFTYDTSDLAAI+QRI EEKA +++YV D GQ  H + +   + +I
Sbjct: 371 G-CSVPLTIVKSDGGFTYDTSDLAAIKQRIFEEKAHYVIYVVDSGQSTHLQTIFAAAQMI 429

Query: 569 G 569
           G
Sbjct: 430 G 430



 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/340 (57%), Positives = 236/340 (69%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ RL E++GHDV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 217 STIIGDSMCRLFEFMGHDVLRLNHLGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 276

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK+RFD +E FKK AY CVV LQ   PD  KAW +ICDVSR++FQKIYD L+V++ +R
Sbjct: 277 KESKRRFDTEEEFKKHAYHCVVLLQSKSPDIIKAWNLICDVSRKEFQKIYDCLDVSIIDR 336

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GES+YQ  M  +V  LE+KG                   L++ K  G             
Sbjct: 337 GESYYQDRMHGIVKELEEKGVVQVDDGRKIVFVPGCSVPLTIVKSDGGFTYDTSDLAAIK 396

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++YV D GQ  H + +   A+  G  +P  T++    FGVVLGED+KKFK
Sbjct: 397 QRIFEEKAHYVIYVVDSGQSTHLQTIFAAAQMIGWYDPKVTKVIHAPFGVVLGEDKKKFK 456

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VA+GCIKYADLSH+R 
Sbjct: 457 TRSGDTVRLIDLLEEGLKRSMDKLKEKERDKVLTAEELKAAQTSVAFGCIKYADLSHHRI 516

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A IN +
Sbjct: 517 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANINED 556



 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 146/192 (76%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VA+GCIKYADLSH+R  DY+FSFDKMLDDRG
Sbjct: 472  GLKRSMDKLKEKERDKVLTAEELKAAQTSVAFGCIKYADLSHHRINDYIFSFDKMLDDRG 531

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A IN + L+ AA++T + L+HEKE+ L K +LR  +++   
Sbjct: 532  NTAAYLLYAFTRIRSIARLANINEDKLQKAARTTKIILDHEKEWKLGKCILRFPEIIQKC 591

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+YLY+++T F+EFYDNCYC+EKD + G+I  V+  R+LL EATA VM K 
Sbjct: 592  LDDLLLHTLCDYLYELATTFTEFYDNCYCVEKDRQTGEIVNVNMWRMLLCEATAAVMAKG 651

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V KM
Sbjct: 652  FDILGIKPVQKM 663



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 84/139 (60%), Gaps = 12/139 (8%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF-KDKGEKKNPF 73
           + ++F  A++ A+P+L     +V  + +    +FGD+QCN AM++ ++  K K +K +P 
Sbjct: 82  IQELFKAAIKAAYPDLESPPLAVTPSQQS---RFGDYQCNSAMSISQLLLKTKEQKVSPR 138

Query: 74  DIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPT 133
           DIA  IA  +           + I+K E A PGF+NV L + +   Q+  +++NGVQPP 
Sbjct: 139 DIADKIARNIPDN--------ECIEKTEIAGPGFINVHLKKDFVSGQLSSMLMNGVQPPA 190

Query: 134 LNKKLRVLVDFSSPNIARK 152
             ++ +V++DFSSPNIA++
Sbjct: 191 AGERKKVVIDFSSPNIAKE 209


>gi|393909968|gb|EFO27684.2| arginyl-tRNA synthetase [Loa loa]
          Length = 583

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/349 (56%), Positives = 257/349 (73%), Gaps = 14/349 (4%)

Query: 214 VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 273
           +F  +V   +PE+      +  T +    KFGD+Q N +M++ +     G+K +P ++A+
Sbjct: 49  LFLESVSKLYPEMSTIPILITETQQA---KFGDYQFNSSMSIAQKLGRNGQKISPQEVAR 105

Query: 274 SIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKK 333
            I          N      I+K+EVA PG++N+FL++ +    I +I + G++ P + K+
Sbjct: 106 RIMD--------NLPKCDRIEKMEVAGPGYINIFLNKNWIAASIANIALKGIEIPVIEKR 157

Query: 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAH 393
            RV+VDFSSPNIAK+MHVGHLRSTIIGD+ISRLL Y+G DV+RLNH+GDWGTQFGMLIAH
Sbjct: 158 -RVVVDFSSPNIAKQMHVGHLRSTIIGDSISRLLTYVGFDVLRLNHIGDWGTQFGMLIAH 216

Query: 394 LQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMI 453
           LQD FP+++ + PPI+DLQ FYKESKKRFDEDE FK RAYQCV  LQ FDPDY KAW+MI
Sbjct: 217 LQDCFPNFINEVPPISDLQTFYKESKKRFDEDEAFKARAYQCVTKLQSFDPDYVKAWQMI 276

Query: 454 CDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS 513
           CDVSR+DF +IYDRL +T+ ERGESFYQKHM +LV  L+K G+LELD+GRKI+     G 
Sbjct: 277 CDVSRKDFNQIYDRLGITIVERGESFYQKHMIELVEELDKLGVLELDEGRKIL--RVGGR 334

Query: 514 IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           +P+T+VKSDG FTYDTSDLA ++ R+  +KADWI+YV D GQ +HF L+
Sbjct: 335 VPLTVVKSDGAFTYDTSDLATLKYRLFVDKADWIIYVVDAGQSLHFELV 383



 Score =  401 bits (1031), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/340 (57%), Positives = 241/340 (70%), Gaps = 40/340 (11%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+ISRLL Y+G DV+RLNH+GDWGTQFGMLIAHLQD FP+++ + PPI+DLQ FY
Sbjct: 179 STIIGDSISRLLTYVGFDVLRLNHIGDWGTQFGMLIAHLQDCFPNFINEVPPISDLQTFY 238

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FK RAYQCV  LQ FDPDY KAW+MICDVSR+DF +IYDRL +T+ ER
Sbjct: 239 KESKKRFDEDEAFKARAYQCVTKLQSFDPDYVKAWQMICDVSRKDFNQIYDRLGITIVER 298

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTK-----KLG-------------------------- 713
           GESFYQKHM +LV  L+K G L L +     ++G                          
Sbjct: 299 GESFYQKHMIELVEELDKLGVLELDEGRKILRVGGRVPLTVVKSDGAFTYDTSDLATLKY 358

Query: 714 ---------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKT 764
                    I+YV D GQ +HF L+    +K G  +  + R++FV  G+VLGED+KKFKT
Sbjct: 359 RLFVDKADWIIYVVDAGQSLHFELVYAAGQKLGWYSQTEKRVEFVSLGLVLGEDKKKFKT 418

Query: 765 RSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNL 824
           RSGDTV+L++LLDEG++R+  KL++K R   +   EL+ A+ AVAYGC+KYADLS  R  
Sbjct: 419 RSGDTVRLTDLLDEGVKRAEIKLQEKERDKVMISEELTLARDAVAYGCVKYADLSQTRTQ 478

Query: 825 DYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           DYVFSFD+MLDDRGNTAVYLLYA+ RI SI R  G++ ED
Sbjct: 479 DYVFSFDRMLDDRGNTAVYLLYAFARIKSICRNTGVSDED 518



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 3/121 (2%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++R+  KL++K R   +   EL+ A+ AVAYGC+KYADLS  R  DYVFSFD+MLDDRG
Sbjct: 433  GVKRAEIKLQEKERDKVMISEELTLARDAVAYGCVKYADLSQTRTQDYVFSFDRMLDDRG 492

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTP---VSLEHEKEFALAKTLLRMNDVL 1045
            NTAVYLLYA+ RI SI R  G++ ED+     S P   + LEH+ EF LAKT+L+  D +
Sbjct: 493  NTAVYLLYAFARIKSICRNTGVSDEDIHNYLCSLPNGVLPLEHKSEFRLAKTILKFTDSI 552

Query: 1046 M 1046
            +
Sbjct: 553  L 553



 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 12/135 (8%)

Query: 18  VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 77
           +F  +V   +PE+      +  T +    KFGD+Q N +M++ +     G+K +P ++A+
Sbjct: 49  LFLESVSKLYPEMSTIPILITETQQA---KFGDYQFNSSMSIAQKLGRNGQKISPQEVAR 105

Query: 78  SIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKK 137
            I          N      I+K+E A PG++N+FL++ +    + +I + G++ P + K+
Sbjct: 106 RIMD--------NLPKCDRIEKMEVAGPGYINIFLNKNWIAASIANIALKGIEIPVIEKR 157

Query: 138 LRVLVDFSSPNIARK 152
            RV+VDFSSPNIA++
Sbjct: 158 -RVVVDFSSPNIAKQ 171


>gi|391337504|ref|XP_003743107.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Metaseiulus
           occidentalis]
          Length = 668

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/508 (43%), Positives = 298/508 (58%), Gaps = 68/508 (13%)

Query: 135 NKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSSSQTKGTA 194
           N +LR  ++F   +IAR+GG   P                              Q  G  
Sbjct: 51  NAELRYHINFLKKSIAREGGECAPM-----------------------------QENGNT 81

Query: 195 KKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKT--ASVASTNEKYVHKFGDFQCNDA 252
            K  + +         LS++F+ A   AFPE   +       STNEK    FGD+QCN A
Sbjct: 82  SKCALTL---------LSEIFSKAFNAAFPEASGQVQVGVTPSTNEK----FGDYQCNVA 128

Query: 253 MALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVY 312
           M   K FK  G+  +  +IA+ +   +            +I    +A PGF+N+ L+  +
Sbjct: 129 MPATKYFKKVGKNISSVEIAERVVEKLVP--------GSLIGSTSIAGPGFINIKLNLDF 180

Query: 313 AGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGH 372
             +    I+ NGV PP +++KLRV+VDFSSPNIAK+MHVGHLRSTIIG++ISRLLE++GH
Sbjct: 181 VRDATLCILKNGVSPPRVDRKLRVVVDFSSPNIAKQMHVGHLRSTIIGESISRLLEFVGH 240

Query: 373 DVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRA 432
           DV+RLNH+GDWGTQFGMLIAHL DKFPDY    PP+ADLQ FYKESK RFD D  FK RA
Sbjct: 241 DVLRLNHIGDWGTQFGMLIAHLMDKFPDYKENVPPVADLQEFYKESKMRFDSDPAFKSRA 300

Query: 433 YQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLE 492
           Y+ VV LQ  + D  KAW++ICDVSR++ Q +YDRL++TL ERGESFY + M  +V  L+
Sbjct: 301 YEAVVRLQSKEKDIVKAWQLICDVSRKEMQSVYDRLDITLLERGESFYNELMIDVVKDLD 360

Query: 493 KKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
           ++GLL L+DGRK+M+ ++   +PMTIVKSDGGFTYDTSD+A+IR R+  EK DW++YV D
Sbjct: 361 RRGLLSLEDGRKVMYPQEENLVPMTIVKSDGGFTYDTSDMASIRHRVGVEKGDWLIYVVD 420

Query: 553 LGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT 612
            GQ  HF+ L +   I   +         +  RL+ VG     FG+++   + K     T
Sbjct: 421 SGQSSHFKQLFKCAQIAGYVD--------EKTRLSFVG-----FGLVLGEDRKKLK---T 464

Query: 613 KSPPIADLQAFYKESKKRFDEDEIFKKR 640
           +S     L     E  +R  E  + K R
Sbjct: 465 RSGETVKLNDLLDEGLQRCREKLLAKGR 492



 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/342 (55%), Positives = 238/342 (69%), Gaps = 43/342 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRLLE++GHDV+RLNH+GDWGTQFGMLIAHL DKFPDY    PP+ADLQ FY
Sbjct: 224 STIIGESISRLLEFVGHDVLRLNHIGDWGTQFGMLIAHLMDKFPDYKENVPPVADLQEFY 283

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESK RFD D  FK RAY+ VV LQ  + D  KAW++ICDVSR++ Q +YDRL++TL ER
Sbjct: 284 KESKMRFDSDPAFKSRAYEAVVRLQSKEKDIVKAWQLICDVSRKEMQSVYDRLDITLLER 343

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLT----------------------------------- 709
           GESFY + M  +V  L+++G LSL                                    
Sbjct: 344 GESFYNELMIDVVKDLDRRGLLSLEDGRKVMYPQEENLVPMTIVKSDGGFTYDTSDMASI 403

Query: 710 -KKLGI------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
             ++G+      +YV D GQ  HF+ L +CA+ AG ++  KTR+ FVGFG+VLGEDRKK 
Sbjct: 404 RHRVGVEKGDWLIYVVDSGQSSHFKQLFKCAQIAGYVD-EKTRLSFVGFGLVLGEDRKKL 462

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSG+TVKL++LLDEGL+R  +KL  K R  ELTP EL  AQ+AVAYGCIK+ADL ++R
Sbjct: 463 KTRSGETVKLNDLLDEGLQRCREKLLAKGRDKELTPEELKRAQEAVAYGCIKFADLVNSR 522

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
             DY+ SFD+MLDDRG TA YLLY+ TRI SIAR AG+++ +
Sbjct: 523 TNDYICSFDRMLDDRGKTAAYLLYSLTRIRSIARQAGVDTAE 564



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 142/192 (73%), Gaps = 3/192 (1%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+R  +KL  K R  ELTP EL  AQ+AVAYGCIK+ADL ++R  DY+ SFD+MLDDRG
Sbjct: 479  GLQRCREKLLAKGRDKELTPEELKRAQEAVAYGCIKFADLVNSRTNDYICSFDRMLDDRG 538

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
             TA YLLY+ TRI SIAR AG+++ +LR +   T + L+H KE  LAK LL+  ++L+ +
Sbjct: 539  KTAAYLLYSLTRIRSIARQAGVDTAELRKSI--TKLDLDHPKEIKLAKQLLKYPEILLTI 596

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKD-AEGKIKTVHTGRLLLAEATAKVMKKC 1107
              DL +H LC+YLYD+S+ FSEFYDNCYCI K+   G+I++V+  RL L EATA+VM+ C
Sbjct: 597  LEDLYIHPLCDYLYDLSSTFSEFYDNCYCIVKNRTTGEIESVNMSRLALCEATAQVMEMC 656

Query: 1108 FDILNIRTVHKM 1119
            F IL IRTV +M
Sbjct: 657  FKILGIRTVDRM 668



 Score = 93.6 bits (231), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 16/161 (9%)

Query: 15  LSDVFTHAVQVAFPELGDKT--ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
           LS++F+ A   AFPE   +       STNEK    FGD+QCN AM   K FK  G+  + 
Sbjct: 89  LSEIFSKAFNAAFPEASGQVQVGVTPSTNEK----FGDYQCNVAMPATKYFKKVGKNISS 144

Query: 73  FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPP 132
            +IA+ +   +            +I     A PGF+N+ L+  +  +    I+ NGV PP
Sbjct: 145 VEIAERVVEKLVP--------GSLIGSTSIAGPGFINIKLNLDFVRDATLCILKNGVSPP 196

Query: 133 TLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAI 173
            +++KLRV+VDFSSPNIA++      HL S I    IS+ +
Sbjct: 197 RVDRKLRVVVDFSSPNIAKQ--MHVGHLRSTIIGESISRLL 235


>gi|344240202|gb|EGV96305.1| Arginyl-tRNA synthetase, cytoplasmic [Cricetulus griseus]
          Length = 542

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/368 (55%), Positives = 269/368 (73%), Gaps = 21/368 (5%)

Query: 253 MALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVY 312
           M + ++ K K +K NP  IA++I    T  L  N    + ID++E+A PGF+NV L + +
Sbjct: 1   MGISQMLKAKEQKVNPRGIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDF 52

Query: 313 AGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGH 372
             EQ+ +++VNG+Q P L +  +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+
Sbjct: 53  VSEQLTNLLVNGIQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGY 112

Query: 373 DVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRA 432
           DV+RLNHVGDWGTQFGMLIAHLQD+FPDYLT SPPI DLQAFYKESKKRFD +E FKKRA
Sbjct: 113 DVLRLNHVGDWGTQFGMLIAHLQDQFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRA 172

Query: 433 YQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLE 492
           YQCVV+LQ  DPD+ KAW +ICDVSR +F KIYD L++TL ERGESFYQ  M+ +V   E
Sbjct: 173 YQCVVSLQSKDPDFIKAWNLICDVSRAEFNKIYDALDITLIERGESFYQDRMKDIVKEFE 232

Query: 493 KKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
            KG +++DDGRKI++     SIP+TIVKSDGGFTYDTSDLAAI+QR+ EEKA+ I+YV D
Sbjct: 233 DKGYVQVDDGRKIVFVPG-CSIPLTIVKSDGGFTYDTSDLAAIKQRLFEEKANKIIYVVD 291

Query: 553 LGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT 612
            GQ VHF+ +  +       ++++ +    V ++ HVG     FG+++   + KF     
Sbjct: 292 NGQAVHFQTIFAA-------AQMIGWYDPKVTQVTHVG-----FGVVLGEDKKKFKTRSG 339

Query: 613 KSPPIADL 620
           ++  + DL
Sbjct: 340 ETVRLVDL 347



 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 242/340 (71%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQD+FPDYLT SPPI DLQAFY
Sbjct: 96  STIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDQFPDYLTVSPPIGDLQAFY 155

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV+LQ  DPD+ KAW +ICDVSR +F KIYD L++TL ER
Sbjct: 156 KESKKRFDTEEEFKKRAYQCVVSLQSKDPDFIKAWNLICDVSRAEFNKIYDALDITLIER 215

Query: 685 GESFYQKHMEQLVPYLEKKGN------------------LSLTKKLG------------- 713
           GESFYQ  M+ +V   E KG                   L++ K  G             
Sbjct: 216 GESFYQDRMKDIVKEFEDKGYVQVDDGRKIVFVPGCSIPLTIVKSDGGFTYDTSDLAAIK 275

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  T++  VGFGVVLGED+KKFK
Sbjct: 276 QRLFEEKANKIIYVVDNGQAVHFQTIFAAAQMIGWYDPKVTQVTHVGFGVVLGEDKKKFK 335

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR 
Sbjct: 336 TRSGETVRLVDLLGEGLKRSMDKLKEKERDKVLTEEELTAAQTSIAYGCIKYADLSHNRL 395

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A ++ E
Sbjct: 396 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANVDEE 435



 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 347  LLGEGLKRSMDKLKEKERDKVLTEEELTAAQTSIAYGCIKYADLSHNRLNDYIFSFDKML 406

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A ++ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 407  DDRGNTAAYLLYAFTRIRSIARLANVDEEMLQKAARETKIVLDHEKEWKLGRCILRFPEI 466

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A V
Sbjct: 467  LQKMLDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAV 526

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 527  MAKGFDILGIKPVQRM 542



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 8/96 (8%)

Query: 57  MALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVY 116
           M + ++ K K +K NP  IA++I    T  L  N    + ID++E A PGF+NV L + +
Sbjct: 1   MGISQMLKAKEQKVNPRGIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDF 52

Query: 117 AGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             EQ+ +++VNG+Q P L +  +V+VDFSSPNIA++
Sbjct: 53  VSEQLTNLLVNGIQLPALGENKKVIVDFSSPNIAKE 88


>gi|324507191|gb|ADY43051.1| Arginyl-tRNA synthetase, partial [Ascaris suum]
          Length = 756

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/402 (52%), Positives = 279/402 (69%), Gaps = 25/402 (6%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           S+   L  +FT AV  A+P+L D   ++  T+   + KFGD+Q N +M + +    +G K
Sbjct: 171 SIVGILKQLFTEAVHKAYPDLLDIPITITETS---IAKFGDYQFNSSMVISQKLGQRGIK 227

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
             P D+A+ I       L   P   K I+K+EVA PG+VNVFL++      I    + GV
Sbjct: 228 TPPRDVAKVI-------LDNIPPCEK-IEKVEVAGPGYVNVFLNKKAIAAIIARTAIKGV 279

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
             P ++K+ RV+VDFSSPNIAKEMHVGHLRSTIIGD+I RL E +G DV+RLNH+GDWGT
Sbjct: 280 SMPRISKR-RVVVDFSSPNIAKEMHVGHLRSTIIGDSICRLFELVGFDVIRLNHIGDWGT 338

Query: 386 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445
           QFGMLIAHLQ++FP++LT++PPIADLQAFYKESKKRFDEDE FK RA+ CVV LQ +D D
Sbjct: 339 QFGMLIAHLQNRFPNFLTETPPIADLQAFYKESKKRFDEDEKFKARAHDCVVKLQSYDAD 398

Query: 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
           + KAW+MICDVSR+DF +IYDRL++ + ERGESFY+  M  +V  L++KG+L+LDDGRK+
Sbjct: 399 FVKAWQMICDVSRKDFTRIYDRLDIRIIERGESFYRNMMADVVRELDEKGVLKLDDGRKL 458

Query: 506 MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEES 565
           M+      IP+T+VKSDGG TYDTSDLAAI+ R+E EKADWI+YV D GQ +H       
Sbjct: 459 MFPSG-CEIPLTVVKSDGGNTYDTSDLAAIKHRLEVEKADWIIYVVDSGQSLHL-----E 512

Query: 566 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           TI     +R L +   +  R+ HV      FG+++   + KF
Sbjct: 513 TIFA--AARDLGWYKCEEKRVEHVS-----FGLVLGEDRKKF 547



 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/340 (56%), Positives = 237/340 (69%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I RL E +G DV+RLNH+GDWGTQFGMLIAHLQ++FP++LT++PPIADLQAFY
Sbjct: 309 STIIGDSICRLFELVGFDVIRLNHIGDWGTQFGMLIAHLQNRFPNFLTETPPIADLQAFY 368

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FK RA+ CVV LQ +D D+ KAW+MICDVSR+DF +IYDRL++ + ER
Sbjct: 369 KESKKRFDEDEKFKARAHDCVVKLQSYDADFVKAWQMICDVSRKDFTRIYDRLDIRIIER 428

Query: 685 GESFYQKHMEQLVPYLEKKGNLSL----------------------------TKKLG--- 713
           GESFY+  M  +V  L++KG L L                            T  L    
Sbjct: 429 GESFYRNMMADVVRELDEKGVLKLDDGRKLMFPSGCEIPLTVVKSDGGNTYDTSDLAAIK 488

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +H   +   A+  G     + R++ V FG+VLGEDRKKFK
Sbjct: 489 HRLEVEKADWIIYVVDSGQSLHLETIFAAARDLGWYKCEEKRVEHVSFGLVLGEDRKKFK 548

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDT++L++LLDEG+RR+  KL++K R   ++P EL EA+ AVAYGC+KYADLS  R 
Sbjct: 549 TRSGDTIRLTDLLDEGIRRAAAKLQEKERDKVMSPQELEEARDAVAYGCVKYADLSQTRT 608

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DYVFSFDKMLDDRGNTAVYLLYAY RI SI R AGI+ E
Sbjct: 609 QDYVFSFDKMLDDRGNTAVYLLYAYARIRSICRNAGISRE 648



 Score =  217 bits (552), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 106/194 (54%), Positives = 137/194 (70%), Gaps = 4/194 (2%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G+RR+  KL++K R   ++P EL EA+ AVAYGC+KYADLS  R  DYVFSFDKMLDDRG
Sbjct: 564  GIRRAAAKLQEKERDKVMSPQELEEARDAVAYGCVKYADLSQTRTQDYVFSFDKMLDDRG 623

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTP---VSLEHEKEFALAKTLLRMNDVL 1045
            NTAVYLLYAY RI SI R AGI+ E +   AQ+ P   + LEHE E+ LAKT+L+ +D +
Sbjct: 624  NTAVYLLYAYARIRSICRNAGISREQIIDYAQNLPEGALPLEHEAEYKLAKTILKFSDCI 683

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
            + V   L LH +C+Y+Y ++T F +FY++CY I KD EG   T++  RL+L + TA VM 
Sbjct: 684  LTVLDTLFLHQVCDYVYSLATTFHDFYNDCYVIHKDREGNT-TIYYHRLVLCQVTADVMA 742

Query: 1106 KCFDILNIRTVHKM 1119
             CF IL IR V +M
Sbjct: 743  NCFQILGIRNVQRM 756



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 12/143 (8%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+   L  +FT AV  A+P+L D   ++  T+   + KFGD+Q N +M + +    +G K
Sbjct: 171 SIVGILKQLFTEAVHKAYPDLLDIPITITETS---IAKFGDYQFNSSMVISQKLGQRGIK 227

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
             P D+A+ I       L   P   K I+K+E A PG+VNVFL++      +    + GV
Sbjct: 228 TPPRDVAKVI-------LDNIPPCEK-IEKVEVAGPGYVNVFLNKKAIAAIIARTAIKGV 279

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
             P ++K+ RV+VDFSSPNIA++
Sbjct: 280 SMPRISKR-RVVVDFSSPNIAKE 301


>gi|312066682|ref|XP_003136386.1| arginyl aa-tRNA synthetase 1 [Loa loa]
          Length = 513

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/340 (57%), Positives = 241/340 (70%), Gaps = 40/340 (11%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+ISRLL Y+G DV+RLNH+GDWGTQFGMLIAHLQD FP+++ + PPI+DLQ FY
Sbjct: 129 STIIGDSISRLLTYVGFDVLRLNHIGDWGTQFGMLIAHLQDCFPNFINEVPPISDLQTFY 188

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FK RAYQCV  LQ FDPDY KAW+MICDVSR+DF +IYDRL +T+ ER
Sbjct: 189 KESKKRFDEDEAFKARAYQCVTKLQSFDPDYVKAWQMICDVSRKDFNQIYDRLGITIVER 248

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTK-----KLG-------------------------- 713
           GESFYQKHM +LV  L+K G L L +     ++G                          
Sbjct: 249 GESFYQKHMIELVEELDKLGVLELDEGRKILRVGGRVPLTVVKSDGAFTYDTSDLATLKY 308

Query: 714 ---------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKT 764
                    I+YV D GQ +HF L+    +K G  +  + R++FV  G+VLGED+KKFKT
Sbjct: 309 RLFVDKADWIIYVVDAGQSLHFELVYAAGQKLGWYSQTEKRVEFVSLGLVLGEDKKKFKT 368

Query: 765 RSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNL 824
           RSGDTV+L++LLDEG++R+  KL++K R   +   EL+ A+ AVAYGC+KYADLS  R  
Sbjct: 369 RSGDTVRLTDLLDEGVKRAEIKLQEKERDKVMISEELTLARDAVAYGCVKYADLSQTRTQ 428

Query: 825 DYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           DYVFSFD+MLDDRGNTAVYLLYA+ RI SI R  G++ ED
Sbjct: 429 DYVFSFDRMLDDRGNTAVYLLYAFARIKSICRNTGVSDED 468



 Score =  391 bits (1005), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/344 (54%), Positives = 241/344 (70%), Gaps = 44/344 (12%)

Query: 219 VQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASV 278
           +Q  +PE+      +  T +    KFGD+Q N +M+                        
Sbjct: 34  LQTLYPEMSTIPILITETQQA---KFGDYQFNSSMS------------------------ 66

Query: 279 VTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLV 338
                         I ++EVA PG++N+FL++ +    I +I + G++ P + K+ RV+V
Sbjct: 67  --------------IAQMEVAGPGYINIFLNKNWIAASIANIALKGIEIPVIEKR-RVVV 111

Query: 339 DFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 398
           DFSSPNIAK+MHVGHLRSTIIGD+ISRLL Y+G DV+RLNH+GDWGTQFGMLIAHLQD F
Sbjct: 112 DFSSPNIAKQMHVGHLRSTIIGDSISRLLTYVGFDVLRLNHIGDWGTQFGMLIAHLQDCF 171

Query: 399 PDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSR 458
           P+++ + PPI+DLQ FYKESKKRFDEDE FK RAYQCV  LQ FDPDY KAW+MICDVSR
Sbjct: 172 PNFINEVPPISDLQTFYKESKKRFDEDEAFKARAYQCVTKLQSFDPDYVKAWQMICDVSR 231

Query: 459 RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTI 518
           +DF +IYDRL +T+ ERGESFYQKHM +LV  L+K G+LELD+GRKI+     G +P+T+
Sbjct: 232 KDFNQIYDRLGITIVERGESFYQKHMIELVEELDKLGVLELDEGRKIL--RVGGRVPLTV 289

Query: 519 VKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           VKSDG FTYDTSDLA ++ R+  +KADWI+YV D GQ +HF L+
Sbjct: 290 VKSDGAFTYDTSDLATLKYRLFVDKADWIIYVVDAGQSLHFELV 333



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 3/121 (2%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++R+  KL++K R   +   EL+ A+ AVAYGC+KYADLS  R  DYVFSFD+MLDDRG
Sbjct: 383  GVKRAEIKLQEKERDKVMISEELTLARDAVAYGCVKYADLSQTRTQDYVFSFDRMLDDRG 442

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTP---VSLEHEKEFALAKTLLRMNDVL 1045
            NTAVYLLYA+ RI SI R  G++ ED+     S P   + LEH+ EF LAKT+L+  D +
Sbjct: 443  NTAVYLLYAFARIKSICRNTGVSDEDIHNYLCSLPNGVLPLEHKSEFRLAKTILKFTDSI 502

Query: 1046 M 1046
            +
Sbjct: 503  L 503



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 42/130 (32%)

Query: 23  VQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASV 82
           +Q  +PE+      +  T +    KFGD+Q N +M+                        
Sbjct: 34  LQTLYPEMSTIPILITETQQA---KFGDYQFNSSMS------------------------ 66

Query: 83  VTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLV 142
                         I ++E A PG++N+FL++ +    + +I + G++ P + K+ RV+V
Sbjct: 67  --------------IAQMEVAGPGYINIFLNKNWIAASIANIALKGIEIPVIEKR-RVVV 111

Query: 143 DFSSPNIARK 152
           DFSSPNIA++
Sbjct: 112 DFSSPNIAKQ 121


>gi|443718168|gb|ELU08913.1| hypothetical protein CAPTEDRAFT_159812 [Capitella teleta]
          Length = 543

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/356 (55%), Positives = 255/356 (71%), Gaps = 22/356 (6%)

Query: 253 MALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVY 312
           M L K+ KDKG K NP +IAQ+IA+ V      NP    +I+K++VA PGF+NV+L++ Y
Sbjct: 1   MGLVKMLKDKGVKANPREIAQNIANNVPE----NP----LIEKVDVAGPGFINVYLTKAY 52

Query: 313 AGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGH 372
             ++I +++  GV+PP +  + RVLVD SSPNIAKEMHVGHLRSTIIGD I RL E++GH
Sbjct: 53  VIDEINNLLSMGVRPPHVGARKRVLVDMSSPNIAKEMHVGHLRSTIIGDAICRLCEFVGH 112

Query: 373 DVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRA 432
           DV+RLNH+GDWGTQFGMLIAHLQDKFP+YL+ SPPI DL AFY+ESK+RFD +E FK RA
Sbjct: 113 DVLRLNHLGDWGTQFGMLIAHLQDKFPNYLSVSPPIQDLMAFYRESKQRFDNEEEFKVRA 172

Query: 433 YQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV-TLTERGESFYQKHMEQLVPYL 491
           Y  VV LQ +DPD  KAW +ICDVSR +F KIY RL++  L +RGES+YQ  M ++V  L
Sbjct: 173 YASVVKLQSYDPDCVKAWTLICDVSRNEFSKIYKRLDIKNLVDRGESYYQPIMPKVVEIL 232

Query: 492 EKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT 551
           +K GL +++DGRKI W     S+P+TIVKSDGGFTYDTSD+AA+ QR+ EEKADW++YV 
Sbjct: 233 DKLGLTKVEDGRKICWVPGH-SVPLTIVKSDGGFTYDTSDMAALHQRLFEEKADWLLYVV 291

Query: 552 DLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           DLGQ VH     ++        R          R+ HVG     FG+++   + KF
Sbjct: 292 DLGQNVHLETCYDAAAAAGWCDR-------KTTRIEHVG-----FGVVLGEDKKKF 335



 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 192/342 (56%), Positives = 231/342 (67%), Gaps = 42/342 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD I RL E++GHDV+RLNH+GDWGTQFGMLIAHLQDKFP+YL+ SPPI DL AFY
Sbjct: 96  STIIGDAICRLCEFVGHDVLRLNHLGDWGTQFGMLIAHLQDKFPNYLSVSPPIQDLMAFY 155

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV-TLTE 683
           +ESK+RFD +E FK RAY  VV LQ +DPD  KAW +ICDVSR +F KIY RL++  L +
Sbjct: 156 RESKQRFDNEEEFKVRAYASVVKLQSYDPDCVKAWTLICDVSRNEFSKIYKRLDIKNLVD 215

Query: 684 RGESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------ 713
           RGES+YQ  M ++V  L+K G                   L++ K  G            
Sbjct: 216 RGESYYQPIMPKVVEILDKLGLTKVEDGRKICWVPGHSVPLTIVKSDGGFTYDTSDMAAL 275

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      ++YV DLGQ VH     + A  AG  +   TR++ VGFGVVLGED+KKF
Sbjct: 276 HQRLFEEKADWLLYVVDLGQNVHLETCYDAAAAAGWCDRKTTRIEHVGFGVVLGEDKKKF 335

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTV+L ELLDEG+RRS  +L+++ R   L   E + A++AVAYGCIKYADLSHNR
Sbjct: 336 KTRSGDTVRLVELLDEGIRRSEARLREEGRDKVLNEEEFNAAKEAVAYGCIKYADLSHNR 395

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
             DYVFSFDKMLD +GNTAVYL YAY RI SIAR A +  ED
Sbjct: 396 VHDYVFSFDKMLDSKGNTAVYLQYAYMRIQSIARAANVKPED 437



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/192 (54%), Positives = 132/192 (68%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G+RRS  +L+++ R   L   E + A++AVAYGCIKYADLSHNR  DYVFSFDKMLD +G
Sbjct: 352  GIRRSEARLREEGRDKVLNEEEFNAAKEAVAYGCIKYADLSHNRVHDYVFSFDKMLDSKG 411

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYL YAY RI SIAR A +  ED+  A     +SL+H KE+ LAK LLR  D+++  
Sbjct: 412  NTAVYLQYAYMRIQSIARAANVKPEDIEAAIGKVQLSLDHPKEWKLAKCLLRFPDIVLRN 471

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKD-AEGKIKTVHTGRLLLAEATAKVMKKC 1107
              D  +H LCEYLY++   F+EF+D CY +EKD   G +  V+  RLLL  ATA++M+  
Sbjct: 472  MDDFLMHILCEYLYELCGCFTEFWDACYVVEKDKTTGNVVKVNMDRLLLCTATARIMEAG 531

Query: 1108 FDILNIRTVHKM 1119
            F IL IRTV KM
Sbjct: 532  FRILGIRTVAKM 543



 Score = 86.7 bits (213), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 66/96 (68%), Gaps = 8/96 (8%)

Query: 57  MALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVY 116
           M L K+ KDKG K NP +IAQ+IA+ V      NP    +I+K++ A PGF+NV+L++ Y
Sbjct: 1   MGLVKMLKDKGVKANPREIAQNIANNVPE----NP----LIEKVDVAGPGFINVYLTKAY 52

Query: 117 AGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             +++ +++  GV+PP +  + RVLVD SSPNIA++
Sbjct: 53  VIDEINNLLSMGVRPPHVGARKRVLVDMSSPNIAKE 88


>gi|449663743|ref|XP_002169247.2| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Hydra
           magnipapillata]
          Length = 589

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/342 (59%), Positives = 245/342 (71%), Gaps = 44/342 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIG++++RLLE+L HDV+RLNHVGDWGTQFGMLIAHL+DKFP++   SPPI DLQ+FY
Sbjct: 142 SSIIGESLARLLEFLNHDVLRLNHVGDWGTQFGMLIAHLEDKFPNFKEVSPPIEDLQSFY 201

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K SKKRFDED  FKKRAYQ VV LQ  +PD K AW++ICDVSR++FQ+IYDRL++TL ER
Sbjct: 202 KASKKRFDEDGEFKKRAYQRVVDLQGGNPDVKNAWKLICDVSRKEFQRIYDRLDITLIER 261

Query: 685 GESFYQKHMEQLVPYLEKKGN--------------------LSLTKKLG----------- 713
           GES+Y   M ++V  L KKGN                    L L K  G           
Sbjct: 262 GESYYNDLMPKIVEDL-KKGNICEKADDGRWIAWAPNMKIPLILVKSDGGFTYDTSDLAA 320

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                       ++YV D GQG HF+ +   A+KAG  NP+ TR+D V FGVVLGED+KK
Sbjct: 321 LHQRLKDEHGEWVIYVVDAGQGDHFKQVFGLAQKAGWYNPSITRVDHVAFGVVLGEDKKK 380

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSGDTV+LSELLDEGL+RS+DKL +K R  EL+P EL  AQ + AYGCIKYADL HN
Sbjct: 381 FKTRSGDTVRLSELLDEGLKRSMDKLLEKERDKELSPDELKAAQSSTAYGCIKYADLCHN 440

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           R +DYVFSFDKMLDD+GNTAVYLLYAYTRI SI R A ++ +
Sbjct: 441 RLMDYVFSFDKMLDDKGNTAVYLLYAYTRIRSIQRKAKVDEQ 482



 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/427 (47%), Positives = 283/427 (66%), Gaps = 28/427 (6%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++++  L+ +F  A+  AFPE  +   S+          FGD+QCN AMA+ K+ K  G+
Sbjct: 2   INIQTALNLLFETAICNAFPEFINPPVSLTVAQNS---NFGDYQCNSAMAIAKVEKKHGK 58

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K +P  IA+ I       L +NP    V+ ++ +A PGF+N+ L + +  + +  ++   
Sbjct: 59  KLSPVVIAEKI----LENLPSNP----VVKEVSIAGPGFINITLEKRFVCDILNKVLHEK 110

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           V PP + KK +V++DFSSPNIAKEMHVGHLRS+IIG++++RLLE+L HDV+RLNHVGDWG
Sbjct: 111 VHPPGVGKKKKVIIDFSSPNIAKEMHVGHLRSSIIGESLARLLEFLNHDVLRLNHVGDWG 170

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHL+DKFP++   SPPI DLQ+FYK SKKRFDED  FKKRAYQ VV LQ  +P
Sbjct: 171 TQFGMLIAHLEDKFPNFKEVSPPIEDLQSFYKASKKRFDEDGEFKKRAYQRVVDLQGGNP 230

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE-LDDGR 503
           D K AW++ICDVSR++FQ+IYDRL++TL ERGES+Y   M ++V  L+K  + E  DDGR
Sbjct: 231 DVKNAWKLICDVSRKEFQRIYDRLDITLIERGESYYNDLMPKIVEDLKKGNICEKADDGR 290

Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
            I W  +   IP+ +VKSDGGFTYDTSDLAA+ QR+++E  +W++YV D GQG HF+   
Sbjct: 291 WIAWAPNM-KIPLILVKSDGGFTYDTSDLAALHQRLKDEHGEWVIYVVDAGQGDHFK--- 346

Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 623
              + G  +++   +    + R++HV      FG+++   + KF    T+S     L   
Sbjct: 347 --QVFG--LAQKAGWYNPSITRVDHVA-----FGVVLGEDKKKFK---TRSGDTVRLSEL 394

Query: 624 YKESKKR 630
             E  KR
Sbjct: 395 LDEGLKR 401



 Score =  209 bits (532), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKL +K R  EL+P EL  AQ + AYGCIKYADL HNR +DYVFSFDKMLDD+G
Sbjct: 398  GLKRSMDKLLEKERDKELSPDELKAAQSSTAYGCIKYADLCHNRLMDYVFSFDKMLDDKG 457

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYAYTRI SI R A ++ + L +      ++L HEKE+ L K L R  +V+   
Sbjct: 458  NTAVYLLYAYTRIRSIQRKAKVDEQVLNLYISQNSINLSHEKEWKLGKLLCRFPEVITRC 517

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LCEYLY++++  +EFYD CYCIE + E G+I +V   R+ + E  AK  +  
Sbjct: 518  ANDLMLHPLCEYLYELASTLTEFYDACYCIEINRETGEILSVDLNRIAILETVAKFFETG 577

Query: 1108 FDILNIRTVHKM 1119
            F IL ++ V KM
Sbjct: 578  FYILGLKPVTKM 589



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 82/144 (56%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           ++++  L+ +F  A+  AFPE  +   S+          FGD+QCN AMA+ K+ K  G+
Sbjct: 2   INIQTALNLLFETAICNAFPEFINPPVSLTVAQNS---NFGDYQCNSAMAIAKVEKKHGK 58

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K +P  IA+ I       L +NP    V+ ++  A PGF+N+ L + +  + +  ++   
Sbjct: 59  KLSPVVIAEKI----LENLPSNP----VVKEVSIAGPGFINITLEKRFVCDILNKVLHEK 110

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           V PP + KK +V++DFSSPNIA++
Sbjct: 111 VHPPGVGKKKKVIIDFSSPNIAKE 134


>gi|194378726|dbj|BAG63528.1| unnamed protein product [Homo sapiens]
          Length = 454

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/340 (59%), Positives = 238/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 8   STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 67

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L+V+L ER
Sbjct: 68  KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIER 127

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 128 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 187

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 188 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 247

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+TV+L +LL EGL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR 
Sbjct: 248 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRL 307

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 308 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 347



 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 165/282 (58%), Positives = 204/282 (72%), Gaps = 16/282 (5%)

Query: 349 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 408
           MHVGHLRSTIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI
Sbjct: 1   MHVGHLRSTIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPI 60

Query: 409 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 468
            DLQ FYKESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++  KIYD L
Sbjct: 61  GDLQVFYKESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDAL 120

Query: 469 NVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYD 528
           +V+L ERGESFYQ  M  +V   E +G +++DDGRKI++     SIP+TIVKSDGG+TYD
Sbjct: 121 DVSLIERGESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYD 179

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           TSDLAAI+QR+ EEKAD I+YV D GQ VHF+ +  +       ++++ +    V R+ H
Sbjct: 180 TSDLAAIKQRLFEEKADMIIYVVDNGQSVHFQTIFAA-------AQMIGWYDPKVTRVFH 232

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            G     FG+++   + KF    T+S     L     E  KR
Sbjct: 233 AG-----FGVVLGEDKKKFK---TRSGETVRLMDLLGEGLKR 266



 Score =  239 bits (610), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 118/196 (60%), Positives = 149/196 (76%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ +VAYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 259  LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKML 318

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 319  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWNLGRCILRFPEI 378

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++TAF+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 379  LQKILDDLFLHTLCDYIYELATAFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 438

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 439  MAKGFDILGIKPVQRM 454


>gi|72091995|ref|XP_781259.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like
           [Strongylocentrotus purpuratus]
          Length = 665

 Score =  394 bits (1013), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/421 (47%), Positives = 280/421 (66%), Gaps = 28/421 (6%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           L+++F  A++VA+P L +   +V  +    V KFGD+QCN AM + +  K +G   +P  
Sbjct: 84  LTEIFRTALRVAYPALTNAPVAVQPSQ---VEKFGDYQCNSAMIIAQQLKAQGSPVSPRV 140

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTL 330
           +AQ I + + S          VI+K+++A PGF+N+ L + +    +  I+  GV PP L
Sbjct: 141 VAQQIQANIPSN--------DVIEKVDIAGPGFINIHLKKSFITPLVTGILTQGVLPPPL 192

Query: 331 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 390
           +KK +V++D SSPNIAKEMH+GHLRSTIIG++ISRL+E++GHDV+++NH+GDWGTQFGML
Sbjct: 193 SKKRKVVIDMSSPNIAKEMHIGHLRSTIIGESISRLMEFVGHDVLKVNHLGDWGTQFGML 252

Query: 391 IAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAW 450
           I HL D+FP+YL +SPPI DLQ FYKESK RFD DE FKKRAY+ VV LQ  +P   KAW
Sbjct: 253 ITHLADQFPNYLNESPPIQDLQKFYKESKVRFDGDEEFKKRAYKMVVRLQGGEPSIIKAW 312

Query: 451 EMICDVSRRDFQKIYDRLNV-TLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE 509
           E+ICD+S+ +F KIY RL+V  L  RGESFYQ+ M  +V  LE  G LE DDGRKIM+  
Sbjct: 313 ELICDISKTEFNKIYARLDVKNLIPRGESFYQERMNVVVQKLEAGGHLEFDDGRKIMFTP 372

Query: 510 DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIG 569
           D  ++P+TIVKSDGG+TYDTSD+A + QR+ E+K + ++YV D GQ  HF    ++   G
Sbjct: 373 D-SAVPLTIVKSDGGYTYDTSDMATLYQRVHEDKGERLIYVVDAGQATHF----DAIFSG 427

Query: 570 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK 629
               R L +   + VR+ HV      FG+++   + KF    T+S  +  L +   E  +
Sbjct: 428 ---CRKLGWYDPNNVRIEHVS-----FGVVLGEDKKKFK---TRSGDVVKLVSLLDEGLR 476

Query: 630 R 630
           R
Sbjct: 477 R 477



 Score =  371 bits (953), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 190/341 (55%), Positives = 232/341 (68%), Gaps = 42/341 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRL+E++GHDV+++NH+GDWGTQFGMLI HL D+FP+YL +SPPI DLQ FY
Sbjct: 218 STIIGESISRLMEFVGHDVLKVNHLGDWGTQFGMLITHLADQFPNYLNESPPIQDLQKFY 277

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV-TLTE 683
           KESK RFD DE FKKRAY+ VV LQ  +P   KAWE+ICD+S+ +F KIY RL+V  L  
Sbjct: 278 KESKVRFDGDEEFKKRAYKMVVRLQGGEPSIIKAWELICDISKTEFNKIYARLDVKNLIP 337

Query: 684 RGESFYQKHMEQLVPYLEKKGNL------------------SLTKKLG------------ 713
           RGESFYQ+ M  +V  LE  G+L                  ++ K  G            
Sbjct: 338 RGESFYQERMNVVVQKLEAGGHLEFDDGRKIMFTPDSAVPLTIVKSDGGYTYDTSDMATL 397

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      ++YV D GQ  HF  +    +K G  +PN  R++ V FGVVLGED+KKF
Sbjct: 398 YQRVHEDKGERLIYVVDAGQATHFDAIFSGCRKLGWYDPNNVRIEHVSFGVVLGEDKKKF 457

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGD VKL  LLDEGLRRSL+ LK+K R   LT  EL  AQ++VAYGCIKYADLSH R
Sbjct: 458 KTRSGDVVKLVSLLDEGLRRSLETLKEKGRDKVLTAEELKAAQESVAYGCIKYADLSHRR 517

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
             DY+FSFDKML+D+GNTAVYLLYAYTRI SI+R A + +E
Sbjct: 518 TNDYIFSFDKMLEDKGNTAVYLLYAYTRIRSISRKAEVLAE 558



 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 147/197 (74%), Gaps = 1/197 (0%)

Query: 924  SLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            SL   GLRRSL+ LK+K R   LT  EL  AQ++VAYGCIKYADLSH R  DY+FSFDKM
Sbjct: 469  SLLDEGLRRSLETLKEKGRDKVLTAEELKAAQESVAYGCIKYADLSHRRTNDYIFSFDKM 528

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            L+D+GNTAVYLLYAYTRI SI+R A + +E L+ AA++T + +EH KE+ LAK L R  +
Sbjct: 529  LEDKGNTAVYLLYAYTRIRSISRKAEVLAETLKEAAKTTSIPVEHPKEWKLAKCLARFPE 588

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAK 1102
            V+     DL +H +C+YLY+++  F+EFY+ CYCI K+ + G+I++V TGRLLL EATA 
Sbjct: 589  VISRTLDDLFIHGICDYLYEVANTFTEFYEVCYCIVKNKQTGEIESVDTGRLLLCEATAA 648

Query: 1103 VMKKCFDILNIRTVHKM 1119
            +M KCFDIL +  V KM
Sbjct: 649  IMAKCFDILGLHPVEKM 665



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 82/138 (59%), Gaps = 11/138 (7%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           L+++F  A++VA+P L +   +V  +    V KFGD+QCN AM + +  K +G   +P  
Sbjct: 84  LTEIFRTALRVAYPALTNAPVAVQPSQ---VEKFGDYQCNSAMIIAQQLKAQGSPVSPRV 140

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTL 134
           +AQ I + + S          VI+K++ A PGF+N+ L + +    +  I+  GV PP L
Sbjct: 141 VAQQIQANIPSN--------DVIEKVDIAGPGFINIHLKKSFITPLVTGILTQGVLPPPL 192

Query: 135 NKKLRVLVDFSSPNIARK 152
           +KK +V++D SSPNIA++
Sbjct: 193 SKKRKVVIDMSSPNIAKE 210


>gi|67970581|dbj|BAE01633.1| unnamed protein product [Macaca fascicularis]
          Length = 454

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/340 (58%), Positives = 239/340 (70%), Gaps = 41/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SRL E+ G+DV+RLN VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 8   STIIGESVSRLFEFAGYDVLRLNRVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 67

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ER
Sbjct: 68  KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIER 127

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M  +V   E +G                   L++ K  G             
Sbjct: 128 GESFYQDRMNDIVQEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 187

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFK
Sbjct: 188 QRLSEEKADMIIYVVDSGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 247

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TR+G+TV+L +L+ EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR 
Sbjct: 248 TRAGETVRLMDLMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRL 307

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 308 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 347



 Score =  325 bits (833), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 161/274 (58%), Positives = 203/274 (74%), Gaps = 13/274 (4%)

Query: 349 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 408
           MHVGHLRSTIIG+++SRL E+ G+DV+RLN VGDWGTQFGMLIAHLQDKFPDYLT SPPI
Sbjct: 1   MHVGHLRSTIIGESVSRLFEFAGYDVLRLNRVGDWGTQFGMLIAHLQDKFPDYLTVSPPI 60

Query: 409 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 468
            DLQAFYKESKKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L
Sbjct: 61  GDLQAFYKESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDAL 120

Query: 469 NVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYD 528
           +V+L ERGESFYQ  M  +V   E +G +++DDGRKI++     SIP+TIVKSDGG+TYD
Sbjct: 121 DVSLIERGESFYQDRMNDIVQEFEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYD 179

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           TSDLAAI+QR+ EEKAD I+YV D GQ VHF+ +  +       ++++ +    V R+ H
Sbjct: 180 TSDLAAIKQRLSEEKADMIIYVVDSGQSVHFQTIFAA-------AQMIGWYDPKVTRVFH 232

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 622
            G     FG+++   + KF     ++  + DL  
Sbjct: 233 AG-----FGVVLGEDKKKFKTRAGETVRLMDLMG 261



 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 259  LMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRLNDYIFSFDKML 318

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 319  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 378

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 379  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 438

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 439  MAKGFDILGIKPVQRM 454


>gi|198426883|ref|XP_002129614.1| PREDICTED: similar to arginyl-tRNA synthetase [Ciona intestinalis]
          Length = 690

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/349 (57%), Positives = 238/349 (68%), Gaps = 42/349 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD I+ L EY GH+V+R+NHVGDWGTQFGMLIAHL D FP+Y  +SPPI DLQAFY
Sbjct: 239 STIIGDCIANLFEYFGHEVLRVNHVGDWGTQFGMLIAHLTDMFPNYKEESPPIGDLQAFY 298

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN-VTLTE 683
           K+SKKRFD+D  FKKRAY CVV LQ  DPD+  AW++ICDVSR++FQ IYDRL  V L E
Sbjct: 299 KQSKKRFDDDPEFKKRAYSCVVKLQSGDPDFINAWKLICDVSRKEFQVIYDRLGIVNLIE 358

Query: 684 RGESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------ 713
           RGESFY   M  ++  +EK+G                   L++ K  G            
Sbjct: 359 RGESFYHNLMPPVIAEIEKQGYVVVEDGRKLVFPEGSQFPLTIVKSDGGFTYDTSDLACI 418

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      ++YVTD GQ  HF+ +   A+K G  +P  TR++ V FGVVLGEDRKKF
Sbjct: 419 KQRIFDESGANLIYVTDAGQAAHFKAIYSVARKMGWYDPQVTRVEHVAFGVVLGEDRKKF 478

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSG+TV+L+ LLDEG +R  +KLK+K R  ELTP E   AQ+AVAYGCIKYADLSHNR
Sbjct: 479 KTRSGETVRLAALLDEGRKRCEEKLKEKGRDKELTPEEFKAAQEAVAYGCIKYADLSHNR 538

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPS 871
             DYVFSFDKML+DRGNTA YLLYAYTRI SIAR A ++ E+  E   S
Sbjct: 539 INDYVFSFDKMLEDRGNTAAYLLYAYTRIKSIARVAKVSREELKEAASS 587



 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/431 (47%), Positives = 280/431 (64%), Gaps = 28/431 (6%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++   L+++F H++  +FP L  K     + N+    KFGD+QCN AM +  + K +G 
Sbjct: 97  VNINQRLTEIFLHSISASFPGLKGKLPVSITLNQN--EKFGDYQCNSAMPISGVLKAQGT 154

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K  P  IA+ I       L   PS + +ID   +A PGF+N+ L+  +    + D++V+G
Sbjct: 155 KMAPRQIAELI-------LKNLPS-SDLIDSCNIAGPGFINIRLNVSFLKRALSDVLVHG 206

Query: 325 VQPPTLNKKL-RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
           V+      +  +V++D+SSPNIAKEMHVGHLRSTIIGD I+ L EY GH+V+R+NHVGDW
Sbjct: 207 VRTHHSKGECGKVVIDYSSPNIAKEMHVGHLRSTIIGDCIANLFEYFGHEVLRVNHVGDW 266

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGMLIAHL D FP+Y  +SPPI DLQAFYK+SKKRFD+D  FKKRAY CVV LQ  D
Sbjct: 267 GTQFGMLIAHLTDMFPNYKEESPPIGDLQAFYKQSKKRFDDDPEFKKRAYSCVVKLQSGD 326

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLN-VTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           PD+  AW++ICDVSR++FQ IYDRL  V L ERGESFY   M  ++  +EK+G + ++DG
Sbjct: 327 PDFINAWKLICDVSRKEFQVIYDRLGIVNLIERGESFYHNLMPPVIAEIEKQGYVVVEDG 386

Query: 503 RKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           RK+++ E     P+TIVKSDGGFTYDTSDLA I+QRI +E    ++YVTD GQ  HF+ +
Sbjct: 387 RKLVFPEG-SQFPLTIVKSDGGFTYDTSDLACIKQRIFDESGANLIYVTDAGQAAHFKAI 445

Query: 563 EESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 622
                   +++R + +    V R+ HV      FG+++   + KF    T+S     L A
Sbjct: 446 Y-------SVARKMGWYDPQVTRVEHVA-----FGVVLGEDRKKFK---TRSGETVRLAA 490

Query: 623 FYKESKKRFDE 633
              E +KR +E
Sbjct: 491 LLDEGRKRCEE 501



 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 140/196 (71%), Gaps = 5/196 (2%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G +R  +KLK+K R  ELTP E   AQ+AVAYGCIKYADLSHNR  DYVFSFDKML+DRG
Sbjct: 495  GRKRCEEKLKEKGRDKELTPEEFKAAQEAVAYGCIKYADLSHNRINDYVFSFDKMLEDRG 554

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQS----TPVSLEHEKEFALAKTLLRMNDV 1044
            NTA YLLYAYTRI SIAR A ++ E+L+ AA S      + LEH KE  LA+ + R  +V
Sbjct: 555  NTAAYLLYAYTRIKSIARVAKVSREELKEAASSFYDDDGLPLEHAKELKLARFITRFPEV 614

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  V  DL  H LC+YLY+++T ++EFYD CYC+EKD + G +  +H  RLLL +AT  V
Sbjct: 615  LQRVCDDLAPHTLCDYLYELATVYTEFYDVCYCVEKDRKTGDVVKIHKHRLLLCDATVAV 674

Query: 1104 MKKCFDILNIRTVHKM 1119
            M +CF IL I+ VHKM
Sbjct: 675  MDQCFKILGIKPVHKM 690



 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 81/145 (55%), Gaps = 11/145 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +++   L+++F H++  +FP L  K     + N+    KFGD+QCN AM +  + K +G 
Sbjct: 97  VNINQRLTEIFLHSISASFPGLKGKLPVSITLNQN--EKFGDYQCNSAMPISGVLKAQGT 154

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K  P  IA+ I       L   PS + +ID    A PGF+N+ L+  +    + D++V+G
Sbjct: 155 KMAPRQIAELI-------LKNLPS-SDLIDSCNIAGPGFINIRLNVSFLKRALSDVLVHG 206

Query: 129 VQPPTLNKKL-RVLVDFSSPNIARK 152
           V+      +  +V++D+SSPNIA++
Sbjct: 207 VRTHHSKGECGKVVIDYSSPNIAKE 231


>gi|443718167|gb|ELU08912.1| hypothetical protein CAPTEDRAFT_225710 [Capitella teleta]
          Length = 656

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/427 (46%), Positives = 282/427 (66%), Gaps = 28/427 (6%)

Query: 184 SSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHK 243
           S ++ ++KG+         + +S+   LS +F  A+Q A+P+L D   +V  + ++    
Sbjct: 47  SLAAEESKGSKVAFVSDKKNMVSIMTGLSQLFGQAIQSAYPDLVDPPTTVVPSTQR---- 102

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGD+QCN AM L K+ KDKG K NP +IAQ+IA+ V+     NP    +I+K++VA PGF
Sbjct: 103 FGDYQCNSAMGLVKMLKDKGVKANPREIAQNIANNVSE----NP----LIEKVDVAGPGF 154

Query: 304 VNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGH--LRSTIIGD 361
           +NV+L++ Y  ++I +++  GV+PP +  + RVLVD SSPNIAK MHVGH  LRSTIIGD
Sbjct: 155 INVYLTKAYVIDEINNLLSMGVRPPYVGARKRVLVDMSSPNIAKVMHVGHYVLRSTIIGD 214

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            I RL E++GHDV++LNH+GDWG + GMLI + QD+FP+YL+ SP I DL  F +ESK+R
Sbjct: 215 AICRLCEFVGHDVLKLNHLGDWGIEIGMLITNFQDEFPNYLSISPLIQDLTTFIQESKQR 274

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV-TLTERGESFY 480
           FD +E FK RAY  VV LQ +DPD  KAW +ICDVSR + + IY RL++  L +RGES+Y
Sbjct: 275 FDNEEEFKARAYASVVKLQSYDPDCVKAWTLICDVSRNELRNIYKRLDIKNLVDRGESYY 334

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIE 540
           Q  M ++V  L+K GL +++DGRKI W     S+P+TIVKSDGGFTYDTSD+AA+ QR+ 
Sbjct: 335 QPIMPKVVEILDKSGLTKVEDGRKICWVPGH-SVPLTIVKSDGGFTYDTSDMAALHQRLF 393

Query: 541 EEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLI 600
           +EKADW++YV +  Q  H     ++        R          R+ HVG     FG+++
Sbjct: 394 KEKADWLLYVVNQSQNEHLETCYDAAAAAGWCDR-------KTTRIEHVG-----FGVVL 441

Query: 601 AHLQDKF 607
              + +F
Sbjct: 442 GEDKKRF 448



 Score =  322 bits (825), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 168/342 (49%), Positives = 215/342 (62%), Gaps = 42/342 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD I RL E++GHDV++LNH+GDWG + GMLI + QD+FP+YL+ SP I DL  F 
Sbjct: 209 STIIGDAICRLCEFVGHDVLKLNHLGDWGIEIGMLITNFQDEFPNYLSISPLIQDLTTFI 268

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV-TLTE 683
           +ESK+RFD +E FK RAY  VV LQ +DPD  KAW +ICDVSR + + IY RL++  L +
Sbjct: 269 QESKQRFDNEEEFKARAYASVVKLQSYDPDCVKAWTLICDVSRNELRNIYKRLDIKNLVD 328

Query: 684 RGESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------ 713
           RGES+YQ  M ++V  L+K G                   L++ K  G            
Sbjct: 329 RGESYYQPIMPKVVEILDKSGLTKVEDGRKICWVPGHSVPLTIVKSDGGFTYDTSDMAAL 388

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      ++YV +  Q  H     + A  AG  +   TR++ VGFGVVLGED+K+F
Sbjct: 389 HQRLFKEKADWLLYVVNQSQNEHLETCYDAAAAAGWCDRKTTRIEHVGFGVVLGEDKKRF 448

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KT  GD V + + LDEG+RRS  +L+++ R   L   E + A++AVAYGCIKYADLSHNR
Sbjct: 449 KTVYGDPVLVVDFLDEGIRRSEARLREEGRDKVLNEEEFNAAKEAVAYGCIKYADLSHNR 508

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
             DYVFSFDKMLD +GNTAVYL YAY RI SIAR A +  ED
Sbjct: 509 VHDYVFSFDKMLDSKGNTAVYLQYAYMRIQSIARAANVKPED 550



 Score =  208 bits (530), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/192 (54%), Positives = 132/192 (68%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G+RRS  +L+++ R   L   E + A++AVAYGCIKYADLSHNR  DYVFSFDKMLD +G
Sbjct: 465  GIRRSEARLREEGRDKVLNEEEFNAAKEAVAYGCIKYADLSHNRVHDYVFSFDKMLDSKG 524

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYL YAY RI SIAR A +  ED+  A     +SL+H KE+ LAK LLR  D+++  
Sbjct: 525  NTAVYLQYAYMRIQSIARAANVKPEDIEAAIGKVQLSLDHPKEWKLAKCLLRFPDIVLRN 584

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKD-AEGKIKTVHTGRLLLAEATAKVMKKC 1107
              D  +H LCEYLY++   F+EF+D CY +EKD   G +  V+  RLLL  ATA++M+  
Sbjct: 585  MDDFLMHILCEYLYELCGCFTEFWDACYVVEKDKTTGNVVKVNMDRLLLCTATARIMEAG 644

Query: 1108 FDILNIRTVHKM 1119
            F IL IRTV KM
Sbjct: 645  FRILGIRTVAKM 656



 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 97/146 (66%), Gaps = 12/146 (8%)

Query: 6   RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           ++ +S+   LS +F  A+Q A+P+L D   +V  + ++    FGD+QCN AM L K+ KD
Sbjct: 65  KNMVSIMTGLSQLFGQAIQSAYPDLVDPPTTVVPSTQR----FGDYQCNSAMGLVKMLKD 120

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           KG K NP +IAQ+IA+ V+     NP    +I+K++ A PGF+NV+L++ Y  +++ +++
Sbjct: 121 KGVKANPREIAQNIANNVSE----NP----LIEKVDVAGPGFINVYLTKAYVIDEINNLL 172

Query: 126 VNGVQPPTLNKKLRVLVDFSSPNIAR 151
             GV+PP +  + RVLVD SSPNIA+
Sbjct: 173 SMGVRPPYVGARKRVLVDMSSPNIAK 198


>gi|358340022|dbj|GAA47972.1| arginyl-tRNA synthetase, partial [Clonorchis sinensis]
          Length = 600

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/444 (47%), Positives = 279/444 (62%), Gaps = 28/444 (6%)

Query: 193 TAKKMNVPVSDR-MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCND 251
           T K +   +S+  +S +  +   F  AV+ AFP+       V   N     +FGD QCN 
Sbjct: 1   TTKALQAELSNHSISFQTAVEAFFDFAVKTAFPDHKGHKVQVTVPNND---RFGDLQCNS 57

Query: 252 AMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRV 311
           A+ L K F       NP  IA+SI   +            +I+K+EVA PGF+N+ +S+ 
Sbjct: 58  ALRLSKEFGSCDATANPSLIAKSIIDALPQN--------DLIEKVEVAGPGFINIRISKA 109

Query: 312 YAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLG 371
           +   ++K I+ +GVQPP L     V++D SSPNIAKEMHVGHLRSTIIGD I+RLL +LG
Sbjct: 110 FVMSELKKILTSGVQPPRLTAHYSVIIDMSSPNIAKEMHVGHLRSTIIGDGIARLLTFLG 169

Query: 372 HDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKR 431
           H V++LNH+GDWGTQFGMLIAHLQ+ FPD  T  PPI DLQAFYK +K +FDEDE F+ R
Sbjct: 170 HKVLKLNHIGDWGTQFGMLIAHLQETFPDVRT-VPPIGDLQAFYKLAKAKFDEDEDFRSR 228

Query: 432 AYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTERGESFYQKHMEQLVPY 490
           AY+ VV LQ  DP + + W+ IC++SRR+FQK+YDRL++  L ERGESFYQ  M  +V  
Sbjct: 229 AYKAVVQLQCHDPTHIRMWQQICEISRREFQKVYDRLDIRDLVERGESFYQSRMHDMVRD 288

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           LE   +L+LD+GRKI+W  +   +P+TIVKSDGGFTYDTSDL A+  RI EEKADW++YV
Sbjct: 289 LETLNMLQLDEGRKILWAPN-CDVPLTIVKSDGGFTYDTSDLTALLHRIHEEKADWVIYV 347

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQG+HF  L  +       +  + +    V R+ HV      FG+++   + KF   
Sbjct: 348 VDSGQGLHFNTLWSA-------AEAVGFYKPKVHRVEHVS-----FGVVLGEDKKKFKTR 395

Query: 611 LTKSPPIAD-LQAFYKESKKRFDE 633
             ++  + D L    + SKKR  E
Sbjct: 396 SGETVRLVDLLDEGLERSKKRLIE 419



 Score =  364 bits (934), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/341 (55%), Positives = 225/341 (65%), Gaps = 43/341 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD I+RLL +LGH V++LNH+GDWGTQFGMLIAHLQ+ FPD  T  PPI DLQAFY
Sbjct: 154 STIIGDGIARLLTFLGHKVLKLNHIGDWGTQFGMLIAHLQETFPDVRT-VPPIGDLQAFY 212

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTE 683
           K +K +FDEDE F+ RAY+ VV LQ  DP + + W+ IC++SRR+FQK+YDRL++  L E
Sbjct: 213 KLAKAKFDEDEDFRSRAYKAVVQLQCHDPTHIRMWQQICEISRREFQKVYDRLDIRDLVE 272

Query: 684 RGESFYQKHMEQLVPYLEKKGNLSL----------------------------------- 708
           RGESFYQ  M  +V  LE    L L                                   
Sbjct: 273 RGESFYQSRMHDMVRDLETLNMLQLDEGRKILWAPNCDVPLTIVKSDGGFTYDTSDLTAL 332

Query: 709 ------TKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                  K   ++YV D GQG+HF  L   A+  G   P   R++ V FGVVLGED+KKF
Sbjct: 333 LHRIHEEKADWVIYVVDSGQGLHFNTLWSAAEAVGFYKPKVHRVEHVSFGVVLGEDKKKF 392

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSG+TV+L +LLDEGL RS  +L +K R  ELT  E   AQ+A+AYGCIKYADLSHNR
Sbjct: 393 KTRSGETVRLVDLLDEGLERSKKRLIEKGRDKELTEDEFKAAQEAIAYGCIKYADLSHNR 452

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
             DY+FSFDKMLDD+GNTAVYLLYAYTRI SIAR AG  SE
Sbjct: 453 INDYIFSFDKMLDDKGNTAVYLLYAYTRIRSIARNAGYTSE 493



 Score =  236 bits (601), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 140/192 (72%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL RS  +L +K R  ELT  E   AQ+A+AYGCIKYADLSHNR  DY+FSFDKMLDD+G
Sbjct: 409  GLERSKKRLIEKGRDKELTEDEFKAAQEAIAYGCIKYADLSHNRINDYIFSFDKMLDDKG 468

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYAYTRI SIAR AG  SE L   +    +SL+H  E+ LAKT+ R  D+L+ +
Sbjct: 469  NTAVYLLYAYTRIRSIARNAGYTSEQLANFSDQQALSLDHPAEWKLAKTICRFPDILLRI 528

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              D  LH LC+YLYD+S  F+ FYD CYCIE+D E G I  V+TGRL+L EATAKVMK  
Sbjct: 529  QNDFLLHTLCDYLYDLSCTFTSFYDVCYCIERDRETGAILRVNTGRLMLCEATAKVMKCG 588

Query: 1108 FDILNIRTVHKM 1119
            FDIL +RTV +M
Sbjct: 589  FDILGLRTVERM 600



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 11/144 (7%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +S +  +   F  AV+ AFP+       V   N     +FGD QCN A+ L K F     
Sbjct: 14  ISFQTAVEAFFDFAVKTAFPDHKGHKVQVTVPNND---RFGDLQCNSALRLSKEFGSCDA 70

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP  IA+SI   +            +I+K+E A PGF+N+ +S+ +   ++K I+ +G
Sbjct: 71  TANPSLIAKSIIDALPQN--------DLIEKVEVAGPGFINIRISKAFVMSELKKILTSG 122

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           VQPP L     V++D SSPNIA++
Sbjct: 123 VQPPRLTAHYSVIIDMSSPNIAKE 146


>gi|326435569|gb|EGD81139.1| arginyl-tRNA synthetase [Salpingoeca sp. ATCC 50818]
          Length = 701

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/351 (54%), Positives = 248/351 (70%), Gaps = 16/351 (4%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           ++D+    + +AFPE  D   S+     K V   G +QCN AM +    K +G K NP +
Sbjct: 61  VADLMRSTIGIAFPEFADVDPSITIPAAK-VKNAGSYQCNAAMNINNKLKKQGVKSNPRE 119

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTL 330
           +AQ IA      L  NP    V+DK+EVA PGF+NV +++ +   Q   ++  G   P +
Sbjct: 120 VAQKIAD----SLPENP----VVDKLEVAGPGFINVHVAKSFVQAQTNKLLRKGALAPPI 171

Query: 331 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 390
           ++KL+V+VDFSSPNIAKEMHVGHLRSTIIG++ISR+LE+ GH+  R+NHVGDWGTQFGML
Sbjct: 172 DRKLKVIVDFSSPNIAKEMHVGHLRSTIIGESISRVLEFAGHETHRVNHVGDWGTQFGML 231

Query: 391 IAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAW 450
           IAHL+D+FPDY TK+PPI DLQAFYK SK  FD+DE FKKRAY   V LQ  DPD   AW
Sbjct: 232 IAHLKDEFPDYKTKAPPIGDLQAFYKASKVLFDQDEEFKKRAYGETVKLQSGDPDVTLAW 291

Query: 451 EMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD----GRKIM 506
           ++ICDVSRR+FQ IY+RL+VT+ E+GESFYQ  M+ +V  L KKGL+ +DD    GRKI 
Sbjct: 292 QLICDVSRREFQDIYNRLDVTIEEKGESFYQSRMQGVVEELTKKGLV-IDDPENPGRKIA 350

Query: 507 W--GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
           W    ++ +IP+ +VKSDG +TYDTSDLA +R R++EEKADW+VYV    Q
Sbjct: 351 WTSAREQTNIPLIVVKSDGAYTYDTSDLATLRYRVQEEKADWVVYVVGQSQ 401



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/140 (67%), Positives = 114/140 (81%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISR+LE+ GH+  R+NHVGDWGTQFGMLIAHL+D+FPDY TK+PPI DLQAFY
Sbjct: 197 STIIGESISRVLEFAGHETHRVNHVGDWGTQFGMLIAHLKDEFPDYKTKAPPIGDLQAFY 256

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K SK  FD+DE FKKRAY   V LQ  DPD   AW++ICDVSRR+FQ IY+RL+VT+ E+
Sbjct: 257 KASKVLFDQDEEFKKRAYGETVKLQSGDPDVTLAWQLICDVSRREFQDIYNRLDVTIEEK 316

Query: 685 GESFYQKHMEQLVPYLEKKG 704
           GESFYQ  M+ +V  L KKG
Sbjct: 317 GESFYQSRMQGVVEELTKKG 336



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 11/159 (6%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           ++D+    + +AFPE  D   S+     K V   G +QCN AM +    K +G K NP +
Sbjct: 61  VADLMRSTIGIAFPEFADVDPSITIPAAK-VKNAGSYQCNAAMNINNKLKKQGVKSNPRE 119

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTL 134
           +AQ IA      L  NP    V+DK+E A PGF+NV +++ +   Q   ++  G   P +
Sbjct: 120 VAQKIAD----SLPENP----VVDKLEVAGPGFINVHVAKSFVQAQTNKLLRKGALAPPI 171

Query: 135 NKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAI 173
           ++KL+V+VDFSSPNIA++      HL S I    IS+ +
Sbjct: 172 DRKLKVIVDFSSPNIAKE--MHVGHLRSTIIGESISRVL 208


>gi|444725689|gb|ELW66249.1| Protein KIBRA [Tupaia chinensis]
          Length = 1978

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/408 (48%), Positives = 268/408 (65%), Gaps = 59/408 (14%)

Query: 200  PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
            P  + +++   L + F +A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 1175 PTKNMININSRLQEAFGYAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 1231

Query: 260  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
            K K  K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L + +  EQ+ +
Sbjct: 1232 KTKELKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQLTN 1283

Query: 320  IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
            ++VNGVQ P + +  +V+VDFSSPNIAKEMHVGHLRSTIIG++I RL E+ G+DV+RLNH
Sbjct: 1284 LLVNGVQLPAIGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESICRLFEFAGYDVLRLNH 1343

Query: 380  VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
            VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAYQCVV L
Sbjct: 1344 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDAEEEFKKRAYQCVVLL 1403

Query: 440  QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
            Q   PD+ KAW++ICDVSR                                   +G +++
Sbjct: 1404 QSKSPDFIKAWKLICDVSR-----------------------------------QGFVQV 1428

Query: 500  DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
            DDGRKI++     S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+YV D GQ VHF
Sbjct: 1429 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLLEEKANMIIYVVDSGQSVHF 1487

Query: 560  RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
            +     TI     ++++ +    V +++H G     FG+++   + KF
Sbjct: 1488 Q-----TIFA--AAQMIGWYDPKVTQVSHAG-----FGVVLGEDKKKF 1523



 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/312 (60%), Positives = 228/312 (73%), Gaps = 20/312 (6%)

Query: 565  STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
            STIIG++I RL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 1320 STIIGESICRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 1379

Query: 625  KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD--------- 675
            KESKKRFD +E FKKRAYQCVV LQ   PD+ KAW++ICDVSR+ F ++ D         
Sbjct: 1380 KESKKRFDAEEEFKKRAYQCVVLLQSKSPDFIKAWKLICDVSRQGFVQVDDGRKIVFVPG 1439

Query: 676  ---RLNVTLTERGESFYQKHMEQLVP-YLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEE 731
                L +  ++ G ++    +  +    LE+K N+       I+YV D GQ VHF+ +  
Sbjct: 1440 CSVPLTIVKSDGGYTYDTSDLAAIKQRLLEEKANM-------IIYVVDSGQSVHFQTIFA 1492

Query: 732  CAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKN 791
             A+  G  +P  T++   GFGVVLGED+KKFKTRSG+TV+L +LL+EGL+RS+DKLK+K 
Sbjct: 1493 AAQMIGWYDPKVTQVSHAGFGVVLGEDKKKFKTRSGETVRLLDLLEEGLKRSMDKLKEKE 1552

Query: 792  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 851
            R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRGNTA YLLYA+TRI
Sbjct: 1553 RDKVLTAEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRI 1612

Query: 852  ASIARTAGINSE 863
             SIAR A I+ E
Sbjct: 1613 RSIARLANIDEE 1624



 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 145/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 1540 GLKRSMDKLKEKERDKVLTAEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 1599

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E LR AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 1600 NTAAYLLYAFTRIRSIARLANIDEEMLRKAARETKIILDHEKEWKLGRCILRFPEILQKI 1659

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 1660 LDDLFLHTLCDYIYELATVFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 1719

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V ++
Sbjct: 1720 FDILGIKPVQRI 1731



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 93/149 (62%), Gaps = 11/149 (7%)

Query: 4    PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
            P ++ +++   L + F +A++ A+P+L +    V  + +    KFGD+QCN AM + ++ 
Sbjct: 1175 PTKNMININSRLQEAFGYAIKAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 1231

Query: 64   KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
            K K  K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+ +
Sbjct: 1232 KTKELKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQLTN 1283

Query: 124  IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            ++VNGVQ P + +  +V+VDFSSPNIA++
Sbjct: 1284 LLVNGVQLPAIGENKKVIVDFSSPNIAKE 1312


>gi|90075828|dbj|BAE87594.1| unnamed protein product [Macaca fascicularis]
          Length = 631

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/430 (47%), Positives = 274/430 (63%), Gaps = 53/430 (12%)

Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
           K    + N P  + +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN
Sbjct: 60  KSLQAERNKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCN 116

Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
            AM + ++ K K +K NP +IA++I    T  L  N    + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168

Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
            +  EQ+  ++VNGVQ P + +  +V+VDFSSPNIAKEMHV                   
Sbjct: 169 DFVSEQLTSLLVNGVQLPAVGENKKVIVDFSSPNIAKEMHV------------------- 209

Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
                     GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 210 ----------GDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 259

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ERGESFYQ  M  +V  
Sbjct: 260 RAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIERGESFYQDRMNDIVQE 319

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
            E +G +++DDGRKI++     SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 320 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLSEEKADMIIYV 378

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D GQ VHF+     TI     ++++ +    V R+ H G     FG+++   + KF   
Sbjct: 379 VDSGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFKTR 426

Query: 611 LTKSPPIADL 620
             ++  + DL
Sbjct: 427 AGETVRLMDL 436



 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 187/337 (55%), Positives = 229/337 (67%), Gaps = 41/337 (12%)

Query: 568 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 627
           +G+    ++++   ++ +  HVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKES
Sbjct: 188 VGENKKVIVDFSSPNIAKEMHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKES 247

Query: 628 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES 687
           KKRFD +E FKKRAYQCVV LQ  +PD  KAW++ICDVSR++F KIYD L+V+L ERGES
Sbjct: 248 KKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQEFNKIYDALDVSLIERGES 307

Query: 688 FYQKHMEQLVPYLEKKG------------------NLSLTKKLG---------------- 713
           FYQ  M  +V   E +G                   L++ K  G                
Sbjct: 308 FYQDRMNDIVQEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIKQRL 367

Query: 714 -------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRS 766
                  I+YV D GQ VHF+ +   A+  G  +P  TR+   GFGVVLGED+KKFKTR+
Sbjct: 368 SEEKADMIIYVVDSGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFKTRA 427

Query: 767 GDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDY 826
           G+TV+L +L+ EGL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DY
Sbjct: 428 GETVRLMDLMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRLNDY 487

Query: 827 VFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           +FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 488 IFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 524



 Score =  239 bits (609), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 148/196 (75%), Gaps = 1/196 (0%)

Query: 925  LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
            L G GL+RS+DKLK+K R   LT  EL+ AQ ++AYGCIKYADLSHNR  DY+FSFDKML
Sbjct: 436  LMGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCIKYADLSHNRLNDYIFSFDKML 495

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++
Sbjct: 496  DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 555

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
            L  +  DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EA A V
Sbjct: 556  LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 615

Query: 1104 MKKCFDILNIRTVHKM 1119
            M K FDIL I+ V +M
Sbjct: 616  MAKGFDILGIKPVQRM 631



 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 20/176 (11%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
           N P ++ +++   L +VF HA++ A+P+L +    V  + +    KFGD+QCN AM + +
Sbjct: 67  NKPTKNMININSRLQEVFGHAIKAAYPDLENPPLLVTPSQQP---KFGDYQCNSAMGISQ 123

Query: 62  IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
           + K K +K NP +IA++I    T  L  N    + I+K+E A PGF+NV L + +  EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAR---------KGGFLYPHLPSQIHDIL 168
             ++VNGVQ P + +  +V+VDFSSPNIA+         + G L  HL  +  D L
Sbjct: 176 TSLLVNGVQLPAVGENKKVIVDFSSPNIAKEMHVGDWGTQFGMLIAHLQDKFPDYL 231


>gi|353228888|emb|CCD75059.1| putative arginyl-tRNA synthetase [Schistosoma mansoni]
          Length = 622

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/489 (41%), Positives = 307/489 (62%), Gaps = 44/489 (8%)

Query: 172 AIAEEEKKQGISSSSSSQTKGTAKKMNVPVS-DRMSVRDYLSDVFTHAVQVAFPELGDKT 230
           AI       G++  +S   K   K++N  V  + +S++  L+ +F +A++  F  +  K 
Sbjct: 14  AIYNYIHSMGLTGYASICFKEYLKQLNDHVQYNSISIQAALAALFDYAIKTVF--INTKH 71

Query: 231 ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLA 290
           +   S   K    FGD+QCN A++   I K+    +NPFDIA+SI + +         + 
Sbjct: 72  SVQLSVPTK--RSFGDYQCNSALS---IRKESNNDQNPFDIAKSIVAAL--------PVN 118

Query: 291 KVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMH 350
            +I+K++V  PGF+N+++ + +   +++ I+++GV PP +  K  V+VD SSPNIAKEMH
Sbjct: 119 DLIEKVDVVPPGFINIWIKQRFISNEVRKILLHGVTPPFIPHKYSVIVDMSSPNIAKEMH 178

Query: 351 VGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 410
           VGHLRSTIIG++ISRLL +LGH V++LNH+GDWGTQFGMLIAHL++ +PD+ T +PPI+D
Sbjct: 179 VGHLRSTIIGESISRLLSFLGHKVLKLNHLGDWGTQFGMLIAHLKEIYPDHKT-APPISD 237

Query: 411 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV 470
           LQAFYK SK R+DE++ F +RA+  VV LQ+ DP+Y  AW+ ICD+SR++F  +Y RL +
Sbjct: 238 LQAFYKTSKTRYDEEKDFNQRAHMAVVKLQQNDPEYVHAWKQICDISRKEFDDVYHRLGI 297

Query: 471 -TLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDT 529
             L ERGESFYQ  ME+ V  L+ + +L+ D+GR I+W   +  +P+T+VKSDGGFTYDT
Sbjct: 298 ENLIERGESFYQSRMEEFVNDLKSQNVLQEDEGRLILW-PPKCEVPLTVVKSDGGFTYDT 356

Query: 530 SDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHV 589
           SDL A+ QR+ EEKADW++YV D+GQ VH      +T+     + +L Y   +V ++ H+
Sbjct: 357 SDLTALLQRLHEEKADWVLYVVDMGQSVHL-----NTVFAG--AEMLGYYNPNVHKVQHI 409

Query: 590 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADL----------QAFYKESKKRFDEDEIFKK 639
           G     FG+++   + KF      +  + DL          +   KE  K   E E  + 
Sbjct: 410 G-----FGVVLGEDKKKFKTRSGDTVRLVDLLDEGLERAKNRLLEKERNKELTEAEFERA 464

Query: 640 R---AYQCV 645
           +   AY C+
Sbjct: 465 QKAVAYGCI 473



 Score =  313 bits (803), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 172/352 (48%), Positives = 226/352 (64%), Gaps = 50/352 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRLL +LGH V++LNH+GDWGTQFGMLIAHL++ +PD+ T +PPI+DLQAFY
Sbjct: 184 STIIGESISRLLSFLGHKVLKLNHLGDWGTQFGMLIAHLKEIYPDHKT-APPISDLQAFY 242

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV-TLTE 683
           K SK R+DE++ F +RA+  VV LQ+ DP+Y  AW+ ICD+SR++F  +Y RL +  L E
Sbjct: 243 KTSKTRYDEEKDFNQRAHMAVVKLQQNDPEYVHAWKQICDISRKEFDDVYHRLGIENLIE 302

Query: 684 RGESFYQKHMEQLVPYL-------EKKGNL----------------------------SL 708
           RGESFYQ  ME+ V  L       E +G L                            +L
Sbjct: 303 RGESFYQSRMEEFVNDLKSQNVLQEDEGRLILWPPKCEVPLTVVKSDGGFTYDTSDLTAL 362

Query: 709 TKKL------GIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
            ++L       ++YV D+GQ VH   +   A+  G  NPN  ++  +GFGVVLGED+KKF
Sbjct: 363 LQRLHEEKADWVLYVVDMGQSVHLNTVFAGAEMLGYYNPNVHKVQHIGFGVVLGEDKKKF 422

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTV+L +LLDEGL R+ ++L +K R+ ELT  E   AQ+AVAYGCIKYADLSH+R
Sbjct: 423 KTRSGDTVRLVDLLDEGLERAKNRLLEKERNKELTEAEFERAQKAVAYGCIKYADLSHSR 482

Query: 823 NLDYVFSFDK-MLDDRGNTAVYLL------YAYTRIASIARTAGINSEDPPE 867
            +DYVFSFD+  L     TAVYL       Y+   I  I++T  +  E P E
Sbjct: 483 TIDYVFSFDRETLLFTCYTAVYLSIIRNAGYSEKTINEISKTVPLIFEHPME 534



 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 94/192 (48%), Positives = 124/192 (64%), Gaps = 9/192 (4%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDK-MLDDR 987
            GL R+ ++L +K R+ ELT  E   AQ+AVAYGCIKYADLSH+R +DYVFSFD+  L   
Sbjct: 439  GLERAKNRLLEKERNKELTEAEFERAQKAVAYGCIKYADLSHSRTIDYVFSFDRETLLFT 498

Query: 988  GNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLML 1047
              TAVYL        SI R AG + + +   +++ P+  EH  E  LAK L R+ D+L+ 
Sbjct: 499  CYTAVYL--------SIIRNAGYSEKTINEISKTVPLIFEHPMELTLAKALCRLPDILLK 550

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
            +  D  LH LC+YLYD+S  F+ FYD CYCIE++ E     ++  R++L EATA+VMK  
Sbjct: 551  IQNDFLLHSLCDYLYDLSCDFTNFYDACYCIERNQETGDVQINKERIVLCEATARVMKCG 610

Query: 1108 FDILNIRTVHKM 1119
            FDIL I TV KM
Sbjct: 611  FDILGIETVEKM 622



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 86/146 (58%), Gaps = 15/146 (10%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           + +S++  L+ +F +A++  F  +  K +   S   K    FGD+QCN A++   I K+ 
Sbjct: 46  NSISIQAALAALFDYAIKTVF--INTKHSVQLSVPTK--RSFGDYQCNSALS---IRKES 98

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
              +NPFDIA+SI + +         +  +I+K++   PGF+N+++ + +   +++ I++
Sbjct: 99  NNDQNPFDIAKSIVAAL--------PVNDLIEKVDVVPPGFINIWIKQRFISNEVRKILL 150

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIARK 152
           +GV PP +  K  V+VD SSPNIA++
Sbjct: 151 HGVTPPFIPHKYSVIVDMSSPNIAKE 176


>gi|256074367|ref|XP_002573497.1| arginyl-tRNA synthetase [Schistosoma mansoni]
          Length = 629

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/489 (42%), Positives = 307/489 (62%), Gaps = 44/489 (8%)

Query: 172 AIAEEEKKQGISSSSSSQTKGTAKKMNVPVS-DRMSVRDYLSDVFTHAVQVAFPELGDKT 230
           AI       G++  +S   K   K++N  V  + +S++  L+ +F +A++  F  +  K 
Sbjct: 14  AIYNYIHSMGLTGYASICFKEYLKQLNDHVQYNSISIQAALAALFDYAIKTVF--INTKH 71

Query: 231 ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLA 290
           +   S   K    FGD+QCN A++   I K+    +NPFDIA+SI + +         + 
Sbjct: 72  SVQLSVPTK--RSFGDYQCNSALS---IRKESNNDQNPFDIAKSIVAAL--------PVN 118

Query: 291 KVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMH 350
            +I+K++V  PGF+N+++ + +   +++ I+++GV PP +  K  V+VD SSPNIAKEMH
Sbjct: 119 DLIEKVDVVPPGFINIWIKQRFISNEVRKILLHGVTPPFIPHKYSVIVDMSSPNIAKEMH 178

Query: 351 VGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 410
           VGHLRSTIIG++ISRLL +LGH V++LNH+GDWGTQFGMLIAHL++ +PD+ T +PPI+D
Sbjct: 179 VGHLRSTIIGESISRLLSFLGHKVLKLNHLGDWGTQFGMLIAHLKEIYPDHKT-APPISD 237

Query: 411 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV 470
           LQAFYK SK R+DE++ F +RA+  VV LQ+ DP+Y  AW+ ICD+SR++F  +Y RL +
Sbjct: 238 LQAFYKTSKTRYDEEKDFNQRAHMAVVKLQQNDPEYVHAWKQICDISRKEFDDVYHRLGI 297

Query: 471 -TLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDT 529
             L ERGESFYQ  ME+ V  L+ + +L+ D+GR I+W   +  +P+T+VKSDGGFTYDT
Sbjct: 298 ENLIERGESFYQSRMEEFVNDLKSQNVLQEDEGRLILW-PPKCEVPLTVVKSDGGFTYDT 356

Query: 530 SDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHV 589
           SDL A+ QR+ EEKADW++YV D+GQ VH      +T+     + +L Y   +V ++ H+
Sbjct: 357 SDLTALLQRLHEEKADWVLYVVDMGQSVHL-----NTVFAG--AEMLGYYNPNVHKVQHI 409

Query: 590 GDWGTQFGMLIAHLQDKFP----------DYLTKSPPIADLQAFYKESKKRFDEDEIFKK 639
           G     FG+++   + KF           D L +    A  +   KE  K   E E  + 
Sbjct: 410 G-----FGVVLGEDKKKFKTRSGDTVRLVDLLDEGLERAKNRLLEKERNKELTEAEFERA 464

Query: 640 R---AYQCV 645
           +   AY C+
Sbjct: 465 QKAVAYGCI 473



 Score =  355 bits (912), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 182/337 (54%), Positives = 233/337 (69%), Gaps = 43/337 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRLL +LGH V++LNH+GDWGTQFGMLIAHL++ +PD+ T +PPI+DLQAFY
Sbjct: 184 STIIGESISRLLSFLGHKVLKLNHLGDWGTQFGMLIAHLKEIYPDHKT-APPISDLQAFY 242

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV-TLTE 683
           K SK R+DE++ F +RA+  VV LQ+ DP+Y  AW+ ICD+SR++F  +Y RL +  L E
Sbjct: 243 KTSKTRYDEEKDFNQRAHMAVVKLQQNDPEYVHAWKQICDISRKEFDDVYHRLGIENLIE 302

Query: 684 RGESFYQKHMEQLVPYL-------EKKGNL----------------------------SL 708
           RGESFYQ  ME+ V  L       E +G L                            +L
Sbjct: 303 RGESFYQSRMEEFVNDLKSQNVLQEDEGRLILWPPKCEVPLTVVKSDGGFTYDTSDLTAL 362

Query: 709 TKKL------GIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
            ++L       ++YV D+GQ VH   +   A+  G  NPN  ++  +GFGVVLGED+KKF
Sbjct: 363 LQRLHEEKADWVLYVVDMGQSVHLNTVFAGAEMLGYYNPNVHKVQHIGFGVVLGEDKKKF 422

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTV+L +LLDEGL R+ ++L +K R+ ELT  E   AQ+AVAYGCIKYADLSH+R
Sbjct: 423 KTRSGDTVRLVDLLDEGLERAKNRLLEKERNKELTEAEFERAQKAVAYGCIKYADLSHSR 482

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
            +DYVFSFD+MLDD+GNTAVYLLYAYTRI SI R AG
Sbjct: 483 TIDYVFSFDRMLDDKGNTAVYLLYAYTRIRSIIRNAG 519



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 137/191 (71%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL R+ ++L +K R+ ELT  E   AQ+AVAYGCIKYADLSH+R +DYVFSFD+MLDD+G
Sbjct: 439  GLERAKNRLLEKERNKELTEAEFERAQKAVAYGCIKYADLSHSRTIDYVFSFDRMLDDKG 498

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYAYTRI SI R AG + + +   +++ P+  EH  E  LAK L R+ D+L+ +
Sbjct: 499  NTAVYLLYAYTRIRSIIRNAGYSEKTINEISKTVPLIFEHPMELTLAKALCRLPDILLKI 558

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
              D  LH LC+YLYD+S  F+ FYD CYCIE++ E     ++  R++L EATA+VMK  F
Sbjct: 559  QNDFLLHSLCDYLYDLSCDFTNFYDACYCIERNQETGDVQINKERIVLCEATARVMKCGF 618

Query: 1109 DILNIRTVHKM 1119
            DIL I TV KM
Sbjct: 619  DILGIETVEKM 629



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 86/146 (58%), Gaps = 15/146 (10%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           + +S++  L+ +F +A++  F  +  K +   S   K    FGD+QCN A++   I K+ 
Sbjct: 46  NSISIQAALAALFDYAIKTVF--INTKHSVQLSVPTK--RSFGDYQCNSALS---IRKES 98

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
              +NPFDIA+SI + +         +  +I+K++   PGF+N+++ + +   +++ I++
Sbjct: 99  NNDQNPFDIAKSIVAAL--------PVNDLIEKVDVVPPGFINIWIKQRFISNEVRKILL 150

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIARK 152
           +GV PP +  K  V+VD SSPNIA++
Sbjct: 151 HGVTPPFIPHKYSVIVDMSSPNIAKE 176


>gi|341896084|gb|EGT52019.1| CBN-RARS-1 protein [Caenorhabditis brenneri]
          Length = 711

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/494 (44%), Positives = 300/494 (60%), Gaps = 57/494 (11%)

Query: 168 LISKAIAEE---EKKQGISSSSSSQTK----------------GTAKKMNVPVSDRMSVR 208
           ++ K+IAE+    KK G+ +S+ + +K                G A K +  V D ++V 
Sbjct: 63  ILEKSIAEQAAKNKKNGVKASAPTDSKSTAPADKKAKNDGKTGGAAPKQSKKV-DYVTVE 121

Query: 209 DY-------LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           D+       L  +F  A+  AFP L D    +A T      +FGD+QC  AM +    K 
Sbjct: 122 DFGSSILGRLQKLFKTAIADAFPGL-DLPLLLAETPNP---QFGDYQCTSAMPIAAKLKS 177

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
            G  K P D+A+ I        A  P+    I+K+ V   GF+N+FL++ Y  +QI  + 
Sbjct: 178 TGVNKKPGDVAKEIE-------AKLPTNVDFIEKVNVLPAGFMNIFLNKDYICKQISQLA 230

Query: 322 VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+  P + KK RVLVDFSSPNIAKEMHVGHLRSTIIGD+I RL E +G DV+R+NH+G
Sbjct: 231 SKGITLPKVAKK-RVLVDFSSPNIAKEMHVGHLRSTIIGDSICRLFEAVGFDVLRVNHIG 289

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIAHL D+FPD+L K P IADLQAFYKESKKRFDEDE+FKKRAY+CVV LQ 
Sbjct: 290 DWGTQFGMLIAHLYDRFPDFLKKLPDIADLQAFYKESKKRFDEDEVFKKRAYECVVKLQS 349

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLE--KKGLLEL 499
            + +  KAW  ICDVS++  Q +YD L++ + + GESFYQ  M +L+ +++  K  ++  
Sbjct: 350 HEEEIVKAWNTICDVSKKYNQIVYDHLDIKIKDVGESFYQDKMVELIKWIKENKPDMIRE 409

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           ++GR IM+  +  ++P+T+VKSDGGFTYDTSDLAA++ R+ EEK DW +YV D GQ +H 
Sbjct: 410 EEGRLIMFPSE-CTVPLTVVKSDGGFTYDTSDLAALKYRMLEEKVDWNIYVVDAGQNLH- 467

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
             LE     G    R LE+   ++ R+ HVG     FG+++   + KF    T+S     
Sbjct: 468 --LESIYAAG----RDLEWYDINIHRVEHVG-----FGLVLGEDRKKFK---TRSGETVR 513

Query: 620 LQAFYKESKKRFDE 633
           L     E  KR  E
Sbjct: 514 LLDLLSEGVKRATE 527



 Score =  353 bits (905), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 180/340 (52%), Positives = 228/340 (67%), Gaps = 43/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I RL E +G DV+R+NH+GDWGTQFGMLIAHL D+FPD+L K P IADLQAFY
Sbjct: 264 STIIGDSICRLFEAVGFDVLRVNHIGDWGTQFGMLIAHLYDRFPDFLKKLPDIADLQAFY 323

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE+FKKRAY+CVV LQ  + +  KAW  ICDVS++  Q +YD L++ + + 
Sbjct: 324 KESKKRFDEDEVFKKRAYECVVKLQSHEEEIVKAWNTICDVSKKYNQIVYDHLDIKIKDV 383

Query: 685 GESFYQKHMEQLVPYL---------EKKGNLSL-----TKKLGIV--------------- 715
           GESFYQ  M +L+ ++         E++G L +     T  L +V               
Sbjct: 384 GESFYQDKMVELIKWIKENKPDMIREEEGRLIMFPSECTVPLTVVKSDGGFTYDTSDLAA 443

Query: 716 --------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                         YV D GQ +H   +    +     + N  R++ VGFG+VLGEDRKK
Sbjct: 444 LKYRMLEEKVDWNIYVVDAGQNLHLESIYAAGRDLEWYDINIHRVEHVGFGLVLGEDRKK 503

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSG+TV+L +LL EG++R+ +KLK+K R   +T  EL+ A+ AVA+GC+KYADLSH 
Sbjct: 504 FKTRSGETVRLLDLLSEGVKRATEKLKEKGREAVMTEEELAAARDAVAFGCVKYADLSHT 563

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           R  DYVFSFD+MLDDRGNTAVYLLYAY RI SI RT+GI 
Sbjct: 564 RTQDYVFSFDRMLDDRGNTAVYLLYAYARIRSIVRTSGIT 603



 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 129/192 (67%), Gaps = 2/192 (1%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++R+ +KLK+K R   +T  EL+ A+ AVA+GC+KYADLSH R  DYVFSFD+MLDDRG
Sbjct: 521  GVKRATEKLKEKGREAVMTEEELAAARDAVAFGCVKYADLSHTRTQDYVFSFDRMLDDRG 580

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPV-SLEHEKEFALAKTLLRMNDVLML 1047
            NTAVYLLYAY RI SI RT+GI    L       P+  L H  E  LAK LL+++D ++ 
Sbjct: 581  NTAVYLLYAYARIRSIVRTSGITDAQLAEYVSKNPILPLNHPAELKLAKQLLKLSDCILQ 640

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
            V   L LH +C+Y+Y ++T F +FY+ CY IEK  +G+   VH  RL L E TA V+  C
Sbjct: 641  VLDSLMLHQMCDYVYQLATLFHDFYNECYVIEK-KDGEPPVVHFHRLALCEVTANVISTC 699

Query: 1108 FDILNIRTVHKM 1119
            F IL IR V KM
Sbjct: 700  FKILGIREVPKM 711



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 12/143 (8%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+   L  +F  A+  AFP L D    +A T      +FGD+QC  AM +    K  G  
Sbjct: 126 SILGRLQKLFKTAIADAFPGL-DLPLLLAETPNP---QFGDYQCTSAMPIAAKLKSTGVN 181

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
           K P D+A+ I        A  P+    I+K+     GF+N+FL++ Y  +Q+  +   G+
Sbjct: 182 KKPGDVAKEIE-------AKLPTNVDFIEKVNVLPAGFMNIFLNKDYICKQISQLASKGI 234

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
             P + KK RVLVDFSSPNIA++
Sbjct: 235 TLPKVAKK-RVLVDFSSPNIAKE 256


>gi|268574474|ref|XP_002642214.1| C. briggsae CBR-RRT-1 protein [Caenorhabditis briggsae]
          Length = 710

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/468 (46%), Positives = 284/468 (60%), Gaps = 46/468 (9%)

Query: 177 EKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDY-------LSDVFTHAVQVAFPELGDK 229
           EKK      +       AKK+     D ++V DY       L  +F  A++ AFP L D 
Sbjct: 94  EKKAKKDGKNGGAAPKQAKKV-----DYVTVNDYGSSIFGRLQSLFKKAIEDAFPGL-DV 147

Query: 230 TASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSL 289
              +A T      +FGD+QCN AM +  I K  G  K P D+ + I        A  P  
Sbjct: 148 PLLLAETPNP---QFGDYQCNSAMPIAAILKATGINKKPGDVGKEIH-------AKLPEN 197

Query: 290 AKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEM 349
              ++KI V   GF+NVFL+  Y  +QI  + +NG+  P + KK RVLVDFSSPNIAKEM
Sbjct: 198 IDFVEKIAVMPAGFINVFLNADYLRKQISSLALNGISLPKVAKK-RVLVDFSSPNIAKEM 256

Query: 350 HVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 409
           HVGHLRSTIIGD+I RL E +G+DV+R+NH+GDWGTQFGMLIAHL D+FPD+L K P I+
Sbjct: 257 HVGHLRSTIIGDSICRLFEAVGYDVLRVNHIGDWGTQFGMLIAHLYDRFPDFLKKLPDIS 316

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DLQAFYKESKKRFDEDE FKKRAY+CVV LQ  D +  +AW  ICDVS++  Q +YD L+
Sbjct: 317 DLQAFYKESKKRFDEDEQFKKRAYECVVKLQSRDGEIVQAWNTICDVSKKYNQIVYDHLD 376

Query: 470 VTLTERGESFYQKHMEQLVPYLE--KKGLLELDDGRKIMW--GEDRGSIPMTIVKSDGGF 525
           + + + GESFYQ  M +LV +++  K  +L  ++GR+IM+  G D   +P+T+VKSDGGF
Sbjct: 377 IKIKDVGESFYQDKMVELVKWIKENKPDMLRKEEGRQIMFPTGCD---VPLTVVKSDGGF 433

Query: 526 TYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVR 585
           TYDTSDLAA++ R+ EEK DW +YV D GQ +H   +  +        R   +   +  R
Sbjct: 434 TYDTSDLAALKYRMLEEKCDWNIYVVDAGQNLHLETVYAA-------GRDFGWYDENTQR 486

Query: 586 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 633
           + HVG     FG+++   + KF    T+S     L     E  KR  E
Sbjct: 487 VEHVG-----FGLVLGDDKKKFK---TRSGETVRLLDLLSEGVKRATE 526



 Score =  348 bits (892), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 174/339 (51%), Positives = 226/339 (66%), Gaps = 43/339 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I RL E +G+DV+R+NH+GDWGTQFGMLIAHL D+FPD+L K P I+DLQAFY
Sbjct: 263 STIIGDSICRLFEAVGYDVLRVNHIGDWGTQFGMLIAHLYDRFPDFLKKLPDISDLQAFY 322

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY+CVV LQ  D +  +AW  ICDVS++  Q +YD L++ + + 
Sbjct: 323 KESKKRFDEDEQFKKRAYECVVKLQSRDGEIVQAWNTICDVSKKYNQIVYDHLDIKIKDV 382

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLG------------------------------- 713
           GESFYQ  M +LV ++++     L K+ G                               
Sbjct: 383 GESFYQDKMVELVKWIKENKPDMLRKEEGRQIMFPTGCDVPLTVVKSDGGFTYDTSDLAA 442

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                        +YV D GQ +H   +    +  G  + N  R++ VGFG+VLG+D+KK
Sbjct: 443 LKYRMLEEKCDWNIYVVDAGQNLHLETVYAAGRDFGWYDENTQRVEHVGFGLVLGDDKKK 502

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSG+TV+L +LL EG++R+ +KLK+K R   +T  EL+ A+ AVA+GC+KYADLSH 
Sbjct: 503 FKTRSGETVRLLDLLSEGVKRATEKLKEKGRDAVMTEEELAAARDAVAFGCVKYADLSHT 562

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           R  DY+FSFD+MLDDRGNTAVYLLYAY RI SI RT+G+
Sbjct: 563 RTQDYIFSFDRMLDDRGNTAVYLLYAYARIRSIVRTSGV 601



 Score =  193 bits (490), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 132/192 (68%), Gaps = 2/192 (1%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++R+ +KLK+K R   +T  EL+ A+ AVA+GC+KYADLSH R  DY+FSFD+MLDDRG
Sbjct: 520  GVKRATEKLKEKGRDAVMTEEELAAARDAVAFGCVKYADLSHTRTQDYIFSFDRMLDDRG 579

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPV-SLEHEKEFALAKTLLRMNDVLML 1047
            NTAVYLLYAY RI SI RT+G+    L      TP+  L H  E  LAK LL+++D ++L
Sbjct: 580  NTAVYLLYAYARIRSIVRTSGVTDSQLADYLAKTPILPLNHPAELKLAKQLLKLSDCVLL 639

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
            V   L LH +C+Y+Y+++T F +FY+ CY IE+  EG+   VH  RL L E TA V+  C
Sbjct: 640  VLDSLMLHQMCDYVYNLATLFHDFYNECYVIER-KEGEPVVVHFHRLALCEVTANVISTC 698

Query: 1108 FDILNIRTVHKM 1119
            F IL IR V KM
Sbjct: 699  FKILGIREVPKM 710



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 81/153 (52%), Gaps = 19/153 (12%)

Query: 7   DRMSVRDY-------LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL 59
           D ++V DY       L  +F  A++ AFP L D    +A T      +FGD+QCN AM +
Sbjct: 115 DYVTVNDYGSSIFGRLQSLFKKAIEDAFPGL-DVPLLLAETPNP---QFGDYQCNSAMPI 170

Query: 60  CKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGE 119
             I K  G  K P D+ + I        A  P     ++KI     GF+NVFL+  Y  +
Sbjct: 171 AAILKATGINKKPGDVGKEIH-------AKLPENIDFVEKIAVMPAGFINVFLNADYLRK 223

Query: 120 QMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           Q+  + +NG+  P + KK RVLVDFSSPNIA++
Sbjct: 224 QISSLALNGISLPKVAKK-RVLVDFSSPNIAKE 255


>gi|313224957|emb|CBY20749.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/404 (49%), Positives = 264/404 (65%), Gaps = 21/404 (5%)

Query: 166 DILISKAIAEEEK-----KQGISS--SSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHA 218
           D L+S   +EE K     K  IS    + ++ +   K + V +S   S+ D L  +FT A
Sbjct: 20  DSLVSNPQSEEAKENSKLKYQISQLQKAIAEERTNLKPLEVEMS--ASILDSLVSLFTVA 77

Query: 219 VQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASV 278
           +  AFP +    A+V  T+ K   KFGD+QCN +M +  + KD GEK  P D+A+ I   
Sbjct: 78  IAGAFPNVPFIKAAVNPTSPKQ-EKFGDYQCNSSMQIAGMLKDAGEKIAPRDVAKKILDN 136

Query: 279 VTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQ-PPTLNKKLRVL 337
           + S          +I +  +A PGF+NVF+ + Y   +I ++   GVQ   + ++  +V+
Sbjct: 137 IPSN--------NLIKETTIAGPGFINVFMCQKYMVNRIGELNNLGVQYDKSKSRGRKVV 188

Query: 338 VDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDK 397
           VD+SSPNIAKEMHVGHLRSTIIGD+I+ L E  G++V+R+NHVGDWGTQFGMLIAHL D 
Sbjct: 189 VDYSSPNIAKEMHVGHLRSTIIGDSIANLFEAYGYEVLRINHVGDWGTQFGMLIAHLIDL 248

Query: 398 FPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVS 457
           FPDY    P I+DLQ FYKESKKRFD++E FKKRAY+ VV LQ  DP   KAW+ IC+VS
Sbjct: 249 FPDYDKNVPRISDLQKFYKESKKRFDDEEDFKKRAYENVVKLQSHDPAIHKAWQAICEVS 308

Query: 458 RRDFQKIYDRLNVT-LTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPM 516
           R +FQK+YDRL +T L E GESFYQ  M  +V  L+K+ LLE DDGR IMW      IP+
Sbjct: 309 RIEFQKVYDRLQITGLKEVGESFYQDKMNAVVDQLKKRDLLEFDDGRYIMWAPGI-EIPL 367

Query: 517 TIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           T+VK+ GG+TYDTSDL A+  R+ E K D ++YV D GQ +HFR
Sbjct: 368 TVVKTGGGYTYDTSDLTALNYRVNEIKGDILIYVVDCGQELHFR 411



 Score =  342 bits (878), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 179/334 (53%), Positives = 221/334 (66%), Gaps = 42/334 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I+ L E  G++V+R+NHVGDWGTQFGMLIAHL D FPDY    P I+DLQ FY
Sbjct: 207 STIIGDSIANLFEAYGYEVLRINHVGDWGTQFGMLIAHLIDLFPDYDKNVPRISDLQKFY 266

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTE 683
           KESKKRFD++E FKKRAY+ VV LQ  DP   KAW+ IC+VSR +FQK+YDRL +T L E
Sbjct: 267 KESKKRFDDEEDFKKRAYENVVKLQSHDPAIHKAWQAICEVSRIEFQKVYDRLQITGLKE 326

Query: 684 RGESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------ 713
            GESFYQ  M  +V  L+K+                    L++ K  G            
Sbjct: 327 VGESFYQDKMNAVVDQLKKRDLLEFDDGRYIMWAPGIEIPLTVVKTGGGYTYDTSDLTAL 386

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      ++YV D GQ +HFR +   A KAG  +  +TR++  GFGVVLGED+KKF
Sbjct: 387 NYRVNEIKGDILIYVVDCGQELHFRQVFAAASKAGFYDAAQTRVEHAGFGVVLGEDKKKF 446

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSG+TV+L +LLDEG++R+ D+L ++ R  ELT  E+ +A  AVAYGCIKYADL  NR
Sbjct: 447 KTRSGETVRLVDLLDEGIKRANDQLLERGREKELTAQEMKDAADAVAYGCIKYADLKSNR 506

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
             DYVFSFD+MLD RGNTA YLLY  TRI S+ R
Sbjct: 507 KNDYVFSFDQMLDIRGNTAAYLLYQLTRIRSVNR 540



 Score =  202 bits (514), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 103/193 (53%), Positives = 132/193 (68%), Gaps = 4/193 (2%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++R+ D+L ++ R  ELT  E+ +A  AVAYGCIKYADL  NR  DYVFSFD+MLD RG
Sbjct: 463  GIKRANDQLLERGREKELTAQEMKDAADAVAYGCIKYADLKSNRKNDYVFSFDQMLDIRG 522

Query: 989  NTAVYLLYAYTRIASIART--AGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
            NTA YLLY  TRI S+ R     I  E++   A S    L   +EF LAKT+LR +++L 
Sbjct: 523  NTAAYLLYQLTRIRSVNRKVEGKITDEEISKIATSGQFDLADPREFKLAKTILRFHEILS 582

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
               RDL +H +CE++YD+S AFS+FYD CY IEK  +GK + +  GRL+LA ATA VM+ 
Sbjct: 583  QAQRDLLIHPICEWMYDLSNAFSQFYDKCYIIEK-KDGK-EEIKVGRLILASATASVMEA 640

Query: 1107 CFDILNIRTVHKM 1119
             F IL IRT+HKM
Sbjct: 641  AFKILGIRTLHKM 653



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 12/156 (7%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+ D L  +FT A+  AFP +    A+V  T+ K   KFGD+QCN +M +  + KD GEK
Sbjct: 65  SILDSLVSLFTVAIAGAFPNVPFIKAAVNPTSPKQ-EKFGDYQCNSSMQIAGMLKDAGEK 123

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
             P D+A+ I   + S          +I +   A PGF+NVF+ + Y   ++ ++   GV
Sbjct: 124 IAPRDVAKKILDNIPSN--------NLIKETTIAGPGFINVFMCQKYMVNRIGELNNLGV 175

Query: 130 Q-PPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           Q   + ++  +V+VD+SSPNIA++      HL S I
Sbjct: 176 QYDKSKSRGRKVVVDYSSPNIAKE--MHVGHLRSTI 209


>gi|308487658|ref|XP_003106024.1| CRE-RARS-1 protein [Caenorhabditis remanei]
 gi|308254598|gb|EFO98550.1| CRE-RARS-1 protein [Caenorhabditis remanei]
          Length = 711

 Score =  363 bits (933), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 210/447 (46%), Positives = 267/447 (59%), Gaps = 37/447 (8%)

Query: 203 DRMSVRDY-------LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL 255
           D ++V DY       L  +F  A+  AFP L D    +A T      +FGD+QC  AM +
Sbjct: 116 DYVTVEDYGSSILGRLQSLFKRAISEAFPGL-DAPLLLAETPNP---QFGDYQCTSAMPI 171

Query: 256 CKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGE 315
               K  G  K P D+ + I        A  P     I+KI V   GF+N+FL   Y   
Sbjct: 172 AAKLKINGINKKPADVGKEIN-------AKLPKNIDFIEKIIVMPAGFINIFLKTDYIRS 224

Query: 316 QIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
           Q+  +   G+  P + KK RVLVDFSSPNIAKEMHVGHLRSTIIGD+I RL E +G DV+
Sbjct: 225 QVSLLASKGISLPKVAKK-RVLVDFSSPNIAKEMHVGHLRSTIIGDSICRLFESVGFDVL 283

Query: 376 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQC 435
           R+NH+GDWGTQFGMLIAHL D+FPD+L K P I+DLQAFYKESKKRFDEDE FKKRAY+C
Sbjct: 284 RVNHIGDWGTQFGMLIAHLYDRFPDFLNKLPDISDLQAFYKESKKRFDEDESFKKRAYEC 343

Query: 436 VVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLE--K 493
           VV LQ  D D  KAW  ICDVS++  Q +YD L++ + + GESFYQ  M  LV +++  K
Sbjct: 344 VVKLQSHDGDIVKAWNTICDVSKKYNQIVYDYLDIKIKDVGESFYQDKMVDLVKWIKQNK 403

Query: 494 KGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
             +L  +DGR+IM+      +P+T+VKSDGGFTYDTSDLAA++ R+ EEK DW +YV D 
Sbjct: 404 PDMLREEDGRQIMFPSG-CDVPLTVVKSDGGFTYDTSDLAALKYRMLEEKVDWNIYVVDA 462

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 613
           GQ +H   +  +        R   +      R+ HVG     FG+++   + KF    T+
Sbjct: 463 GQSLHLETVYAA-------GRDFGWYDESKQRVEHVG-----FGLVLGDDKKKFK---TR 507

Query: 614 SPPIADLQAFYKESKKRFDEDEIFKKR 640
           S     L     E  KR  E    KKR
Sbjct: 508 SGETVRLLDLLSEGVKRATEKLKEKKR 534



 Score =  353 bits (905), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 180/340 (52%), Positives = 228/340 (67%), Gaps = 43/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I RL E +G DV+R+NH+GDWGTQFGMLIAHL D+FPD+L K P I+DLQAFY
Sbjct: 264 STIIGDSICRLFESVGFDVLRVNHIGDWGTQFGMLIAHLYDRFPDFLNKLPDISDLQAFY 323

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY+CVV LQ  D D  KAW  ICDVS++  Q +YD L++ + + 
Sbjct: 324 KESKKRFDEDESFKKRAYECVVKLQSHDGDIVKAWNTICDVSKKYNQIVYDYLDIKIKDV 383

Query: 685 GESFYQKHMEQLVPYL---------EKKGN-----------LSLTKKLG----------- 713
           GESFYQ  M  LV ++         E+ G            L++ K  G           
Sbjct: 384 GESFYQDKMVDLVKWIKQNKPDMLREEDGRQIMFPSGCDVPLTVVKSDGGFTYDTSDLAA 443

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                        +YV D GQ +H   +    +  G  + +K R++ VGFG+VLG+D+KK
Sbjct: 444 LKYRMLEEKVDWNIYVVDAGQSLHLETVYAAGRDFGWYDESKQRVEHVGFGLVLGDDKKK 503

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSG+TV+L +LL EG++R+ +KLK+K R   +T  EL+ A+ AVA+GC+KYADLSH 
Sbjct: 504 FKTRSGETVRLLDLLSEGVKRATEKLKEKKREAVMTEEELTTARDAVAFGCVKYADLSHT 563

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           R  DYVFSFD+MLDDRGNTAVYLLYAY RI SI RT+G+N
Sbjct: 564 RTQDYVFSFDRMLDDRGNTAVYLLYAYARIRSIVRTSGVN 603



 Score =  196 bits (497), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 2/192 (1%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++R+ +KLK+K R   +T  EL+ A+ AVA+GC+KYADLSH R  DYVFSFD+MLDDRG
Sbjct: 521  GVKRATEKLKEKKREAVMTEEELTTARDAVAFGCVKYADLSHTRTQDYVFSFDRMLDDRG 580

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPV-SLEHEKEFALAKTLLRMNDVLML 1047
            NTAVYLLYAY RI SI RT+G+N   L     +TPV  L H  E  LAK LL+++D ++L
Sbjct: 581  NTAVYLLYAYARIRSIVRTSGVNDTQLAEYVSNTPVLPLNHPAELKLAKHLLKLSDCILL 640

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
            V   L LH +C+Y+Y ++T F +FY+ CY IEK  + +   VH  RL L E TA V+  C
Sbjct: 641  VLDSLMLHQVCDYVYQLATLFHDFYNECYVIEKKGD-EPPVVHFHRLALCEVTANVISTC 699

Query: 1108 FDILNIRTVHKM 1119
            F IL IR V KM
Sbjct: 700  FKILGIREVPKM 711



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 74/153 (48%), Gaps = 19/153 (12%)

Query: 7   DRMSVRDY-------LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL 59
           D ++V DY       L  +F  A+  AFP L D    +A T      +FGD+QC  AM +
Sbjct: 116 DYVTVEDYGSSILGRLQSLFKRAISEAFPGL-DAPLLLAETPNP---QFGDYQCTSAMPI 171

Query: 60  CKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGE 119
               K  G  K P D+ + I        A  P     I+KI     GF+N+FL   Y   
Sbjct: 172 AAKLKINGINKKPADVGKEIN-------AKLPKNIDFIEKIIVMPAGFINIFLKTDYIRS 224

Query: 120 QMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           Q+  +   G+  P + KK RVLVDFSSPNIA++
Sbjct: 225 QVSLLASKGISLPKVAKK-RVLVDFSSPNIAKE 256


>gi|71985061|ref|NP_001022551.1| Protein RARS-1, isoform a [Caenorhabditis elegans]
 gi|21431831|sp|Q19825.2|SYRC_CAEEL RecName: Full=Probable arginine--tRNA ligase, cytoplasmic; AltName:
           Full=Arginyl-tRNA synthetase; Short=ArgRS
 gi|351058314|emb|CCD65757.1| Protein RARS-1, isoform a [Caenorhabditis elegans]
          Length = 713

 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 218/475 (45%), Positives = 283/475 (59%), Gaps = 46/475 (9%)

Query: 177 EKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDY-------LSDVFTHAVQVAFPELGDK 229
           EKK      +       AKK+     D ++V DY       L  +F  A++ AFP L D 
Sbjct: 97  EKKAKKDGKTGGAPPKQAKKV-----DYVTVEDYGSSIFGRLQSLFKKAIEDAFPGL-DV 150

Query: 230 TASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSL 289
              +A T      +FGD+QCN AM +    K     K P D+A+ I        A  P+ 
Sbjct: 151 PLLLAETPNP---QFGDYQCNSAMPIAAKLKANKINKRPGDVAKEIQ-------AKLPTK 200

Query: 290 AKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEM 349
              ++KI+V   GF+N+FL+  Y   QI  +   GV+ P L +K RVLVDFSSPNIAKEM
Sbjct: 201 IDFVEKIDVMPAGFINIFLNTDYLRRQISLLASEGVKLPKLTRK-RVLVDFSSPNIAKEM 259

Query: 350 HVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 409
           HVGHLRSTIIGD+I RL E +G DV+R+NH+GDWGTQFGMLIAHL D+FPD+L K P I+
Sbjct: 260 HVGHLRSTIIGDSICRLFEAVGFDVLRVNHIGDWGTQFGMLIAHLYDRFPDFLKKLPDIS 319

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DLQAFYKESKKRFDEDE FKKRAY+ VV LQ  D D  KAW  ICDVS++  Q +Y+ L+
Sbjct: 320 DLQAFYKESKKRFDEDEQFKKRAYEYVVKLQSHDGDIVKAWNTICDVSKKYNQIVYNYLD 379

Query: 470 VTLTERGESFYQKHMEQLVPYLE--KKGLLELDDGRKIMW--GEDRGSIPMTIVKSDGGF 525
           + + + GESFYQ  M +LV +++  K  +L  +DGR+IM+  G D   IP+T+VKSDGGF
Sbjct: 380 IKIKDVGESFYQDKMIELVKWVKTNKPDMLREEDGRQIMFPTGCD---IPLTVVKSDGGF 436

Query: 526 TYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVR 585
           TYDTSDLAA++ R+ EEK DW +YV D GQ +H   +  +        R   +    + R
Sbjct: 437 TYDTSDLAALKYRMLEEKCDWNIYVVDSGQSLHLETVYAA-------GRDFGWYDESIQR 489

Query: 586 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKR 640
           + HV      FG+++   + KF    T+S     L     E  KR  E  I K R
Sbjct: 490 VEHVA-----FGLVLGDDKKKFK---TRSGETVRLLDLLSEGVKRATEKLIEKGR 536



 Score =  326 bits (835), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 170/333 (51%), Positives = 220/333 (66%), Gaps = 43/333 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I RL E +G DV+R+NH+GDWGTQFGMLIAHL D+FPD+L K P I+DLQAFY
Sbjct: 266 STIIGDSICRLFEAVGFDVLRVNHIGDWGTQFGMLIAHLYDRFPDFLKKLPDISDLQAFY 325

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY+ VV LQ  D D  KAW  ICDVS++  Q +Y+ L++ + + 
Sbjct: 326 KESKKRFDEDEQFKKRAYEYVVKLQSHDGDIVKAWNTICDVSKKYNQIVYNYLDIKIKDV 385

Query: 685 GESFYQKHMEQLVPYL---------EKKGN-----------LSLTKKLG----------- 713
           GESFYQ  M +LV ++         E+ G            L++ K  G           
Sbjct: 386 GESFYQDKMIELVKWVKTNKPDMLREEDGRQIMFPTGCDIPLTVVKSDGGFTYDTSDLAA 445

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                        +YV D GQ +H   +    +  G  + +  R++ V FG+VLG+D+KK
Sbjct: 446 LKYRMLEEKCDWNIYVVDSGQSLHLETVYAAGRDFGWYDESIQRVEHVAFGLVLGDDKKK 505

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSG+TV+L +LL EG++R+ +KL +K R T ++  +L  A+ AVA+GC+KYADLSH 
Sbjct: 506 FKTRSGETVRLLDLLSEGVKRATEKLIEKGRETAMSEEQLVAARDAVAFGCVKYADLSHT 565

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           R  DYVFSFD+ML+DRGNTAVYLLYAYTRI SI
Sbjct: 566 RTQDYVFSFDRMLEDRGNTAVYLLYAYTRIQSI 598



 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 133/192 (69%), Gaps = 2/192 (1%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++R+ +KL +K R T ++  +L  A+ AVA+GC+KYADLSH R  DYVFSFD+ML+DRG
Sbjct: 523  GVKRATEKLIEKGRETAMSEEQLVAARDAVAFGCVKYADLSHTRTQDYVFSFDRMLEDRG 582

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTP-VSLEHEKEFALAKTLLRMNDVLML 1047
            NTAVYLLYAYTRI SI     + + DL     STP + L+H  EF LAK LL+++D ++L
Sbjct: 583  NTAVYLLYAYTRIQSIFEKDEVKNVDLVKYIASTPTLPLDHPGEFKLAKQLLKLSDCVLL 642

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
            V   L LH +C+Y+Y ++T F +FY+ CY IE + EG+   VH  RL L + T KVM  C
Sbjct: 643  VLDSLMLHQMCDYVYQLATLFHDFYNECYVIE-NKEGEKPFVHMHRLALCDVTRKVMSTC 701

Query: 1108 FDILNIRTVHKM 1119
            F IL +R V+KM
Sbjct: 702  FKILGLREVNKM 713



 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 19/153 (12%)

Query: 7   DRMSVRDY-------LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL 59
           D ++V DY       L  +F  A++ AFP L D    +A T      +FGD+QCN AM +
Sbjct: 118 DYVTVEDYGSSIFGRLQSLFKKAIEDAFPGL-DVPLLLAETPNP---QFGDYQCNSAMPI 173

Query: 60  CKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGE 119
               K     K P D+A+ I        A  P+    ++KI+    GF+N+FL+  Y   
Sbjct: 174 AAKLKANKINKRPGDVAKEIQ-------AKLPTKIDFVEKIDVMPAGFINIFLNTDYLRR 226

Query: 120 QMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           Q+  +   GV+ P L +K RVLVDFSSPNIA++
Sbjct: 227 QISLLASEGVKLPKLTRK-RVLVDFSSPNIAKE 258


>gi|71985068|ref|NP_001022552.1| Protein RARS-1, isoform b [Caenorhabditis elegans]
 gi|351058315|emb|CCD65758.1| Protein RARS-1, isoform b [Caenorhabditis elegans]
          Length = 692

 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 218/475 (45%), Positives = 283/475 (59%), Gaps = 46/475 (9%)

Query: 177 EKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDY-------LSDVFTHAVQVAFPELGDK 229
           EKK      +       AKK+     D ++V DY       L  +F  A++ AFP L D 
Sbjct: 97  EKKAKKDGKTGGAPPKQAKKV-----DYVTVEDYGSSIFGRLQSLFKKAIEDAFPGL-DV 150

Query: 230 TASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSL 289
              +A T      +FGD+QCN AM +    K     K P D+A+ I        A  P+ 
Sbjct: 151 PLLLAETPNP---QFGDYQCNSAMPIAAKLKANKINKRPGDVAKEIQ-------AKLPTK 200

Query: 290 AKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEM 349
              ++KI+V   GF+N+FL+  Y   QI  +   GV+ P L +K RVLVDFSSPNIAKEM
Sbjct: 201 IDFVEKIDVMPAGFINIFLNTDYLRRQISLLASEGVKLPKLTRK-RVLVDFSSPNIAKEM 259

Query: 350 HVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 409
           HVGHLRSTIIGD+I RL E +G DV+R+NH+GDWGTQFGMLIAHL D+FPD+L K P I+
Sbjct: 260 HVGHLRSTIIGDSICRLFEAVGFDVLRVNHIGDWGTQFGMLIAHLYDRFPDFLKKLPDIS 319

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DLQAFYKESKKRFDEDE FKKRAY+ VV LQ  D D  KAW  ICDVS++  Q +Y+ L+
Sbjct: 320 DLQAFYKESKKRFDEDEQFKKRAYEYVVKLQSHDGDIVKAWNTICDVSKKYNQIVYNYLD 379

Query: 470 VTLTERGESFYQKHMEQLVPYLE--KKGLLELDDGRKIMW--GEDRGSIPMTIVKSDGGF 525
           + + + GESFYQ  M +LV +++  K  +L  +DGR+IM+  G D   IP+T+VKSDGGF
Sbjct: 380 IKIKDVGESFYQDKMIELVKWVKTNKPDMLREEDGRQIMFPTGCD---IPLTVVKSDGGF 436

Query: 526 TYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVR 585
           TYDTSDLAA++ R+ EEK DW +YV D GQ +H   +  +        R   +    + R
Sbjct: 437 TYDTSDLAALKYRMLEEKCDWNIYVVDSGQSLHLETVYAA-------GRDFGWYDESIQR 489

Query: 586 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKR 640
           + HV      FG+++   + KF    T+S     L     E  KR  E  I K R
Sbjct: 490 VEHVA-----FGLVLGDDKKKFK---TRSGETVRLLDLLSEGVKRATEKLIEKGR 536



 Score =  325 bits (834), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 170/333 (51%), Positives = 220/333 (66%), Gaps = 43/333 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I RL E +G DV+R+NH+GDWGTQFGMLIAHL D+FPD+L K P I+DLQAFY
Sbjct: 266 STIIGDSICRLFEAVGFDVLRVNHIGDWGTQFGMLIAHLYDRFPDFLKKLPDISDLQAFY 325

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFDEDE FKKRAY+ VV LQ  D D  KAW  ICDVS++  Q +Y+ L++ + + 
Sbjct: 326 KESKKRFDEDEQFKKRAYEYVVKLQSHDGDIVKAWNTICDVSKKYNQIVYNYLDIKIKDV 385

Query: 685 GESFYQKHMEQLVPYL---------EKKGN-----------LSLTKKLG----------- 713
           GESFYQ  M +LV ++         E+ G            L++ K  G           
Sbjct: 386 GESFYQDKMIELVKWVKTNKPDMLREEDGRQIMFPTGCDIPLTVVKSDGGFTYDTSDLAA 445

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                        +YV D GQ +H   +    +  G  + +  R++ V FG+VLG+D+KK
Sbjct: 446 LKYRMLEEKCDWNIYVVDSGQSLHLETVYAAGRDFGWYDESIQRVEHVAFGLVLGDDKKK 505

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
           FKTRSG+TV+L +LL EG++R+ +KL +K R T ++  +L  A+ AVA+GC+KYADLSH 
Sbjct: 506 FKTRSGETVRLLDLLSEGVKRATEKLIEKGRETAMSEEQLVAARDAVAFGCVKYADLSHT 565

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           R  DYVFSFD+ML+DRGNTAVYLLYAYTRI SI
Sbjct: 566 RTQDYVFSFDRMLEDRGNTAVYLLYAYTRIQSI 598



 Score =  174 bits (440), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/162 (52%), Positives = 116/162 (71%), Gaps = 2/162 (1%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G++R+ +KL +K R T ++  +L  A+ AVA+GC+KYADLSH R  DYVFSFD+ML+DRG
Sbjct: 523  GVKRATEKLIEKGRETAMSEEQLVAARDAVAFGCVKYADLSHTRTQDYVFSFDRMLEDRG 582

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTP-VSLEHEKEFALAKTLLRMNDVLML 1047
            NTAVYLLYAYTRI SI     + + DL     STP + L+H  EF LAK LL+++D ++L
Sbjct: 583  NTAVYLLYAYTRIQSIFEKDEVKNVDLVKYIASTPTLPLDHPGEFKLAKQLLKLSDCVLL 642

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTV 1089
            V   L LH +C+Y+Y ++T F +FY+ CY IE + EG IKT+
Sbjct: 643  VLDSLMLHQMCDYVYQLATLFHDFYNECYVIE-NKEGGIKTI 683



 Score = 83.2 bits (204), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 19/153 (12%)

Query: 7   DRMSVRDY-------LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL 59
           D ++V DY       L  +F  A++ AFP L D    +A T      +FGD+QCN AM +
Sbjct: 118 DYVTVEDYGSSIFGRLQSLFKKAIEDAFPGL-DVPLLLAETPNP---QFGDYQCNSAMPI 173

Query: 60  CKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGE 119
               K     K P D+A+ I        A  P+    ++KI+    GF+N+FL+  Y   
Sbjct: 174 AAKLKANKINKRPGDVAKEIQ-------AKLPTKIDFVEKIDVMPAGFINIFLNTDYLRR 226

Query: 120 QMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           Q+  +   GV+ P L +K RVLVDFSSPNIA++
Sbjct: 227 QISLLASEGVKLPKLTRK-RVLVDFSSPNIAKE 258


>gi|320165286|gb|EFW42185.1| rars protein [Capsaspora owczarzaki ATCC 30864]
          Length = 742

 Score =  360 bits (925), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/404 (47%), Positives = 263/404 (65%), Gaps = 26/404 (6%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++ D++ ++    ++  FP  G   A +  +N  Y       +   A+ L K     G 
Sbjct: 156 VALFDHVRNMLEMGIEATFPGKGFANAMLVGSNVSY-------KSAAALTLLKRIDGLG- 207

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P+  A  IAS +   L  +  L       EV + GF+ V +        + +I+V+G
Sbjct: 208 --FPYKTAHDIASAIHKNLPKSTLLES--SHFEVDERGFITVVVPAKLLATILTNIVVHG 263

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           V PP   KK RV++DFSSPNIAKEMHVGHLRSTIIG+++ RLLEY G +V+R+NHVGDWG
Sbjct: 264 VLPPKQEKKKRVIIDFSSPNIAKEMHVGHLRSTIIGESLCRLLEYRGFEVLRVNHVGDWG 323

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR-FD 443
           TQFGMLIAHL+D+FP++  +SPPI DLQAFYK SKKRFD DE FKKRAY  VV LQ   D
Sbjct: 324 TQFGMLIAHLKDEFPNFRNESPPIGDLQAFYKASKKRFDADEEFKKRAYTEVVKLQAGTD 383

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
            D + AW++ICD SRR+F+ IY RL+VT+ E+GESFYQ  M  +V  LEK+G ++++DGR
Sbjct: 384 ADVRHAWKLICDESRREFELIYKRLHVTIKEKGESFYQPMMPSVVADLEKRGFVQVEDGR 443

Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           KIM+  D+ ++P+T+ KSDGG+TYDTSDLAAI+ RIEEE ADWI+YV D+GQ +H     
Sbjct: 444 KIMFVPDQ-AVPLTVEKSDGGYTYDTSDLAAIKYRIEEEHADWIIYVVDVGQSLHLE--- 499

Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
             T+   + ++ + +L    VR++HV      FG+++     KF
Sbjct: 500 --TVF--SAAKHVGWLDPAKVRVDHVA-----FGLVLGEDGKKF 534



 Score =  338 bits (868), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 180/339 (53%), Positives = 223/339 (65%), Gaps = 43/339 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RLLEY G +V+R+NHVGDWGTQFGMLIAHL+D+FP++  +SPPI DLQAFY
Sbjct: 295 STIIGESLCRLLEYRGFEVLRVNHVGDWGTQFGMLIAHLKDEFPNFRNESPPIGDLQAFY 354

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQR-FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           K SKKRFD DE FKKRAY  VV LQ   D D + AW++ICD SRR+F+ IY RL+VT+ E
Sbjct: 355 KASKKRFDADEEFKKRAYTEVVKLQAGTDADVRHAWKLICDESRREFELIYKRLHVTIKE 414

Query: 684 RGESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------ 713
           +GESFYQ  M  +V  LEK+G                   L++ K  G            
Sbjct: 415 KGESFYQPMMPSVVADLEKRGFVQVEDGRKIMFVPDQAVPLTVEKSDGGYTYDTSDLAAI 474

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                      I+YV D+GQ +H   +   AK  G L+P K R+D V FG+VLGED KKF
Sbjct: 475 KYRIEEEHADWIIYVVDVGQSLHLETVFSAAKHVGWLDPAKVRVDHVAFGLVLGEDGKKF 534

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           KTRSGDTV+L +LLDE + R+   L D  R  +L P E + A  AV+YG +KYADLS +R
Sbjct: 535 KTRSGDTVRLVDLLDEAVERAKVVL-DSKRGGDLQPEEYAAALDAVSYGAVKYADLSTSR 593

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
             DY FSFD+ML   GNTA YLLYAYTR++SIAR AGI+
Sbjct: 594 TSDYTFSFDRMLKLVGNTAPYLLYAYTRMSSIARNAGID 632



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 107/186 (57%), Gaps = 8/186 (4%)

Query: 939  DKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAY 998
            D  R  +L P E + A  AV+YG +KYADLS +R  DY FSFD+ML   GNTA YLLYAY
Sbjct: 560  DSKRGGDLQPEEYAAALDAVSYGAVKYADLSTSRTSDYTFSFDRMLKLVGNTAPYLLYAY 619

Query: 999  TRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLC 1058
            TR++SIAR AGI   D+       P       E ALA+ L+R  ++L  +T DL  H L 
Sbjct: 620  TRMSSIARNAGI---DVSKEIAKHPCEFTEGPELALARALIRFPEILNRITDDLMPHTLG 676

Query: 1059 EYLYDISTAFSEFYDNCYCIEKDAEGK-----IKTVHTGRLLLAEATAKVMKKCFDILNI 1113
             +LY+I   +S FY+    IE D +       IK++H  RL L EA + V+K+   IL +
Sbjct: 677  SFLYEICQLYSTFYEKLRIIEHDVDKATGTKTIKSIHYPRLALCEAASLVLKQGLSILGM 736

Query: 1114 RTVHKM 1119
              V KM
Sbjct: 737  DVVGKM 742



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 12/144 (8%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +++ D++ ++    ++  FP  G   A +  +N  Y       +   A+ L K     G 
Sbjct: 156 VALFDHVRNMLEMGIEATFPGKGFANAMLVGSNVSY-------KSAAALTLLKRIDGLG- 207

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
              P+  A  IAS +   L  +  L       E  + GF+ V +        + +I+V+G
Sbjct: 208 --FPYKTAHDIASAIHKNLPKSTLLES--SHFEVDERGFITVVVPAKLLATILTNIVVHG 263

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           V PP   KK RV++DFSSPNIA++
Sbjct: 264 VLPPKQEKKKRVIIDFSSPNIAKE 287


>gi|167538705|ref|XP_001751014.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770493|gb|EDQ84184.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1019

 Score =  340 bits (872), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 188/417 (45%), Positives = 260/417 (62%), Gaps = 39/417 (9%)

Query: 203 DRMSVRDYLSDVFTHAVQVAFPELGDKTA-SVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           D MSV   + ++ T  ++ AFP+LG++   ++ S     V     +Q N AM L    K 
Sbjct: 87  DLMSV---IVELVTAGIRAAFPQLGEEPVDALVSVPSGKVSTDAMYQSNAAMRLAAQLKA 143

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
           KG K  P    + +A+  T+ +  N     +I   E+A PGFVN+ ++  +       ++
Sbjct: 144 KGTKMPP----REVAAAFTAAIPKN----DIISGYEIAGPGFVNIDINTSFLEGVTTKLL 195

Query: 322 VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GV PP   K+  V+VDFSSPNIAKEMHVGHLRSTIIG++I+R+LEY+GHDV R+NHVG
Sbjct: 196 NKGVLPPEHTKQ-PVIVDFSSPNIAKEMHVGHLRSTIIGESIARMLEYIGHDVQRVNHVG 254

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGT FGMLI HL+DKFP++ ++ P I+DLQ FYK +KKRFDE+  FK R Y+ VV LQ 
Sbjct: 255 DWGTPFGMLICHLRDKFPNFQSEPPSISDLQGFYKAAKKRFDEEPEFKPRVYEAVVKLQA 314

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            DP+   AW ++CDVSRR+FQ+IYDRL++ + E+GESFYQ  M ++V  LE  G LE DD
Sbjct: 315 HDPETILAWNLVCDVSRREFQRIYDRLDIDVKEKGESFYQDMMVEVVKQLESAGKLEEDD 374

Query: 502 ---GRKIMWG--EDRGSIPMTIVKSDG------GFTYDTSDLAAIRQRIEEEKADWIVYV 550
              GRKI W   +    +P+ +VKSDG      G+TYDTSDLAA+R R  +  A W+VYV
Sbjct: 375 TAPGRKIAWSSVKKETKVPLIVVKSDGARCGMTGYTYDTSDLAALRYRASQ--ATWLVYV 432

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
            D GQ  HF+ +         + R +E++     R++HVG     FG+++     +F
Sbjct: 433 VDNGQSTHFQNVF-------ALGRDMEWVSPK-HRVDHVG-----FGVVLGEDGKRF 476



 Score =  335 bits (859), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 179/378 (47%), Positives = 232/378 (61%), Gaps = 67/378 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I+R+LEY+GHDV R+NHVGDWGT FGMLI HL+DKFP++ ++ P I+DLQ FY
Sbjct: 229 STIIGESIARMLEYIGHDVQRVNHVGDWGTPFGMLICHLRDKFPNFQSEPPSISDLQGFY 288

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K +KKRFDE+  FK R Y+ VV LQ  DP+   AW ++CDVSRR+FQ+IYDRL++ + E+
Sbjct: 289 KAAKKRFDEEPEFKPRVYEAVVKLQAHDPETILAWNLVCDVSRREFQRIYDRLDIDVKEK 348

Query: 685 GESFYQKHMEQLVPYLEKKGNL--------------SLTKKLGI---------------- 714
           GESFYQ  M ++V  LE  G L              S+ K+  +                
Sbjct: 349 GESFYQDMMVEVVKQLESAGKLEEDDTAPGRKIAWSSVKKETKVPLIVVKSDGARCGMTG 408

Query: 715 ---------------------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                VYV D GQ  HF+ +    +    ++P K R+D VGFGV
Sbjct: 409 YTYDTSDLAALRYRASQATWLVYVVDNGQSTHFQNVFALGRDMEWVSP-KHRVDHVGFGV 467

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           VLGED K+FKTRSGDTV+L +LLDEG+ R+        R TE+TP + +   +A+AYGCI
Sbjct: 468 VLGEDGKRFKTRSGDTVRLKDLLDEGVERA----GAAARTTEMTPEQRARMVEAIAYGCI 523

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQS 873
           KYADLSHNR  DYVFS+DKML D+GNTAVYLLYA TR+ SI R           P+ ++ 
Sbjct: 524 KYADLSHNRTNDYVFSYDKMLQDKGNTAVYLLYANTRVHSILRN----------PEIAKQ 573

Query: 874 EVE-DRCCPSHAKTHRKP 890
            ++ D   PSH  T   P
Sbjct: 574 NIDIDALAPSHTVTLTHP 591



 Score =  171 bits (432), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 121/192 (63%), Gaps = 3/192 (1%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            L   +++     R TE+TP + +   +A+AYGCIKYADLSHNR  DYVFS+DKML D+GN
Sbjct: 490  LDEGVERAGAAARTTEMTPEQRARMVEAIAYGCIKYADLSHNRTNDYVFSYDKMLQDKGN 549

Query: 990  TAVYLLYAYTRIASIARTAGINSE--DLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLML 1047
            TAVYLLYA TR+ SI R   I  +  D+   A S  V+L H KE  +AK L R  +VL  
Sbjct: 550  TAVYLLYANTRVHSILRNPEIAKQNIDIDALAPSHTVTLTHPKEIKIAKYLARFPEVLNR 609

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
                L  H LC+Y+Y+++  F+EFY  CY ++K ++G +K V   RL+L ++   V+++ 
Sbjct: 610  TIDTLMPHRLCDYIYELTNVFTEFYQECYAVQKQSDGSVK-VDVNRLMLYKSVGMVLEQA 668

Query: 1108 FDILNIRTVHKM 1119
            F +L IR +  +
Sbjct: 669  FHLLGIRAIEAI 680



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 13/147 (8%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTA-SVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           D MSV   + ++ T  ++ AFP+LG++   ++ S     V     +Q N AM L    K 
Sbjct: 87  DLMSV---IVELVTAGIRAAFPQLGEEPVDALVSVPSGKVSTDAMYQSNAAMRLAAQLKA 143

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           KG K  P    + +A+  T+ +  N     +I   E A PGFVN+ ++  +       ++
Sbjct: 144 KGTKMPP----REVAAAFTAAIPKN----DIISGYEIAGPGFVNIDINTSFLEGVTTKLL 195

Query: 126 VNGVQPPTLNKKLRVLVDFSSPNIARK 152
             GV PP   K+  V+VDFSSPNIA++
Sbjct: 196 NKGVLPPEHTKQ-PVIVDFSSPNIAKE 221


>gi|339240855|ref|XP_003376353.1| arginyl-tRNA synthetase, cytoplasmic [Trichinella spiralis]
 gi|316974934|gb|EFV58402.1| arginyl-tRNA synthetase, cytoplasmic [Trichinella spiralis]
          Length = 1083

 Score =  338 bits (866), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 197/441 (44%), Positives = 262/441 (59%), Gaps = 61/441 (13%)

Query: 193 TAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDA 252
           T+ K     +   SV   L  +F  AV  AFP   +    +  T+ +   K GD+Q N  
Sbjct: 16  TSNKCEKEANSDSSVLQSLKLIFAKAVNDAFPNATECPIIITETSSE---KHGDYQFNSC 72

Query: 253 MALCKIFKDKGEKK-NPFDIAQSIASVV--TSELATNPSLAKVIDKIEVAKPGFVNVFLS 309
           MA+ K   +    K +P  +A+ I +V+  T +L    SL   I+KIE+A PGF+N+FL+
Sbjct: 73  MAIAKFLSNSHSTKISPRKVAEEIVNVLMTTVQLEKEKSL---IEKIEIAGPGFLNIFLN 129

Query: 310 RVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEY 369
                ++I DI VNGV+PP L  K RV+VDFSSPNIAKEMHVGHLRSTIIGD I RLLE+
Sbjct: 130 FNAVHQRIFDIFVNGVKPPVLPAK-RVVVDFSSPNIAKEMHVGHLRSTIIGDCICRLLEF 188

Query: 370 LGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFK 429
            G DV+RLNHVGDWGTQFGMLIAHL+D+FP+Y  + P +ADLQ+FYKESK RFD DE FK
Sbjct: 189 CGFDVLRLNHVGDWGTQFGMLIAHLKDRFPNYQNEPPHLADLQSFYKESKVRFDADEEFK 248

Query: 430 KRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVP 489
            RA + VV LQ  +P+  KAW +IC +SR                               
Sbjct: 249 SRALKEVVKLQAHEPEQIKAWTLICQLSRH------------------------------ 278

Query: 490 YLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
                GLLE+D+GRKI++ E   S P+TIVKSDGG+TYDTSDLAA++ R+ EEKADW++Y
Sbjct: 279 -----GLLEIDEGRKIVFPEG-CSTPLTIVKSDGGYTYDTSDLAALKHRLFEEKADWVLY 332

Query: 550 VTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPD 609
           V D GQG+HF+ +        T+ + L +   +  R+ H+      FG+++   + KF  
Sbjct: 333 VVDAGQGLHFQQIF-------TVGKQLGWWNENSHRVQHIA-----FGLVLGEDKRKFR- 379

Query: 610 YLTKSPPIADLQAFYKESKKR 630
             T+S     L    +E  +R
Sbjct: 380 --TRSGETVKLSDLLEEGMRR 398



 Score =  329 bits (843), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 168/312 (53%), Positives = 214/312 (68%), Gaps = 12/312 (3%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD I RLLE+ G DV+RLNHVGDWGTQFGMLIAHL+D+FP+Y  + P +ADLQ+FY
Sbjct: 175 STIIGDCICRLLEFCGFDVLRLNHVGDWGTQFGMLIAHLKDRFPNYQNEPPHLADLQSFY 234

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           KESK RFD DE FK RA + VV LQ  +P+  KAW +IC +SR    +I +   +   E 
Sbjct: 235 KESKVRFDADEEFKSRALKEVVKLQAHEPEQIKAWTLICQLSRHGLLEIDEGRKIVFPEG 294

Query: 684 --------RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKK 735
                   + +  Y      L      K  L   K   ++YV D GQG+HF+ +    K+
Sbjct: 295 CSTPLTIVKSDGGYTYDTSDLAAL---KHRLFEEKADWVLYVVDAGQGLHFQQIFTVGKQ 351

Query: 736 AGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTE 795
            G  N N  R+  + FG+VLGED++KF+TRSG+TVKLS+LL+EG+RRS   LK+K R   
Sbjct: 352 LGWWNENSHRVQHIAFGLVLGEDKRKFRTRSGETVKLSDLLEEGMRRSAATLKEKQRDQV 411

Query: 796 LTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIA 855
           L+P EL  AQ++VAYGCIKYADLSHNR  DYVFSFDKML+D+GNTAVYLLYAY+R+ SI+
Sbjct: 412 LSPKELDIAQRSVAYGCIKYADLSHNRKNDYVFSFDKMLEDKGNTAVYLLYAYSRMRSIS 471

Query: 856 RTAGINSEDPPE 867
           R A ++ E+  E
Sbjct: 472 RNANVSRENLQE 483



 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/191 (49%), Positives = 132/191 (69%), Gaps = 2/191 (1%)

Query: 916  RGQEEVQDS-LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNL 974
            R  E V+ S L   G+RRS   LK+K R   L+P EL  AQ++VAYGCIKYADLSHNR  
Sbjct: 381  RSGETVKLSDLLEEGMRRSAATLKEKQRDQVLSPKELDIAQRSVAYGCIKYADLSHNRKN 440

Query: 975  DYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFAL 1034
            DYVFSFDKML+D+GNTAVYLLYAY+R+ SI+R A ++ E+L+       +S +H KE  L
Sbjct: 441  DYVFSFDKMLEDKGNTAVYLLYAYSRMRSISRNANVSRENLQEKIHCGEISFDHPKELKL 500

Query: 1035 AKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKD-AEGKIKTVHTGR 1093
             K +++  D++  V  +   + +C+Y+Y+++T F+EFYD CYCIEKD A G +  ++  R
Sbjct: 501  MKMIIKFPDIMSHVVENFLPNLICDYIYNLATVFTEFYDECYCIEKDPATGALVKINYNR 560

Query: 1094 LLLAEATAKVM 1104
            L+L E TA ++
Sbjct: 561  LILCEVTADLL 571



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 10/146 (6%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           SV   L  +F  AV  AFP   +    +  T+ +   K GD+Q N  MA+ K   +    
Sbjct: 29  SVLQSLKLIFAKAVNDAFPNATECPIIITETSSE---KHGDYQFNSCMAIAKFLSNSHST 85

Query: 70  K-NPFDIAQSIASVV--TSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
           K +P  +A+ I +V+  T +L    SL   I+KIE A PGF+N+FL+     +++ DI V
Sbjct: 86  KISPRKVAEEIVNVLMTTVQLEKEKSL---IEKIEIAGPGFLNIFLNFNAVHQRIFDIFV 142

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIARK 152
           NGV+PP L  K RV+VDFSSPNIA++
Sbjct: 143 NGVKPPVLPAK-RVVVDFSSPNIAKE 167


>gi|349805633|gb|AEQ18289.1| putative arginyl-trna cytoplasmic [Hymenochirus curtipes]
          Length = 560

 Score =  336 bits (862), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 185/426 (43%), Positives = 254/426 (59%), Gaps = 77/426 (18%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +++   L ++F  A++ A+PEL +   +V  + +    KFGD+QCN AMA+ ++ K   +
Sbjct: 29  ININSQLQEIFGTAIRAAYPELQNAPLAVTPSQQP---KFGDYQCNSAMAMTQMLKTMDK 85

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K +P  IA   A                          F+NV L + +  +Q+  ++VNG
Sbjct: 86  KVSPRGIALVQA--------------------------FINVHLHKDFISKQLSKLLVNG 119

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           VQP    +K +V+VDFSSPNIAKEMHVGHLRSTIIGD+I RL E++GHDV+RLNH+GDWG
Sbjct: 120 VQPIVEERK-KVVVDFSSPNIAKEMHVGHLRSTIIGDSICRLFEFVGHDVLRLNHLGDWG 178

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAHLQDKFPDY                               YQCVV LQ  +P
Sbjct: 179 TQFGMLIAHLQDKFPDY-------------------------------YQCVVQLQNKNP 207

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           D   AW +IC+VSR++FQKIYD L++++ +RGESFYQ  M Q+V   E KGL+E+D+GRK
Sbjct: 208 DIITAWNLICEVSRKEFQKIYDCLDISIIDRGESFYQDRMVQVVKEFESKGLVEVDEGRK 267

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           I++     ++P+TI KSDGGFTYDTSDLAA++QR++EEKAD I+YV D GQ +H +    
Sbjct: 268 IVFAPG-CTVPLTIQKSDGGFTYDTSDLAALKQRLQEEKADMIIYVIDSGQSIHMQ---- 322

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
            TI       ++ +    V R+ H G     FG+++   + KF    T+S     L    
Sbjct: 323 -TIFA--AGHMIGWYDPKVTRIEHAG-----FGVVLGEDKKKFK---TRSGDTVRLIDLL 371

Query: 625 KESKKR 630
           +E  KR
Sbjct: 372 EEGLKR 377



 Score =  334 bits (856), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 174/341 (51%), Positives = 213/341 (62%), Gaps = 72/341 (21%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I RL E++GHDV+RLNH+GDWGTQFGMLIAHLQDKFPDY              
Sbjct: 150 STIIGDSICRLFEFVGHDVLRLNHLGDWGTQFGMLIAHLQDKFPDY-------------- 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
                            YQCVV LQ  +PD   AW +IC+VSR++FQKIYD L++++ +R
Sbjct: 196 -----------------YQCVVQLQNKNPDIITAWNLICEVSRKEFQKIYDCLDISIIDR 238

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFYQ  M Q+V   E KG                   L++ K  G             
Sbjct: 239 GESFYQDRMVQVVKEFESKGLVEVDEGRKIVFAPGCTVPLTIQKSDGGFTYDTSDLAALK 298

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YV D GQ +H + +       G  +P  TR++  GFGVVLGED+KKFK
Sbjct: 299 QRLQEEKADMIIYVIDSGQSIHMQTIFAAGHMIGWYDPKVTRIEHAGFGVVLGEDKKKFK 358

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTV+L +LL+EGL+RS++KL +K R   LTP EL+ AQ +VA+GCIKYADLSHNR 
Sbjct: 359 TRSGDTVRLIDLLEEGLKRSMEKLNEKGRDKVLTPEELTAAQTSVAFGCIKYADLSHNRM 418

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
            DY+FSFDKMLDDRGNTA YLLYAYTRI SIAR A I+ E+
Sbjct: 419 NDYIFSFDKMLDDRGNTAAYLLYAYTRIRSIARLANISDEE 459



 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 143/190 (75%), Gaps = 4/190 (2%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS++KL +K R   LTP EL+ AQ +VA+GCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 374  GLKRSMEKLNEKGRDKVLTPEELTAAQTSVAFGCIKYADLSHNRMNDYIFSFDKMLDDRG 433

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYAYTRI SIAR A I+ E+L  AA+     L+HEKE+ LA+ +LR  ++L   
Sbjct: 434  NTAAYLLYAYTRIRSIARLANISDEELHKAAKEI---LDHEKEWKLARCILRFPEILQKN 490

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+YLY+++T F+EFYDNCYC+EKD + G+I  V+  RLLL +ATA VM K 
Sbjct: 491  LEDLLLHTLCDYLYELATIFTEFYDNCYCVEKDRQTGQIVKVNMSRLLLCDATAAVMAKG 550

Query: 1108 FDILNIRTVH 1117
            FDIL I+ V 
Sbjct: 551  FDILGIKPVQ 560



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 30/147 (20%)

Query: 6   RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           +  +++   L ++F  A++ A+PEL +   +V  + +    KFGD+QCN AMA+ ++ K 
Sbjct: 26  KSMININSQLQEIFGTAIRAAYPELQNAPLAVTPSQQP---KFGDYQCNSAMAMTQMLKT 82

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
             +K +P  IA   A                          F+NV L + +  +Q+  ++
Sbjct: 83  MDKKVSPRGIALVQA--------------------------FINVHLHKDFISKQLSKLL 116

Query: 126 VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           VNGVQP    +K +V+VDFSSPNIA++
Sbjct: 117 VNGVQPIVEERK-KVVVDFSSPNIAKE 142


>gi|297799374|ref|XP_002867571.1| arginyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata]
 gi|297313407|gb|EFH43830.1| arginyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata]
          Length = 590

 Score =  335 bits (860), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 190/428 (44%), Positives = 269/428 (62%), Gaps = 37/428 (8%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK-KNPF 269
           L+ +F  ++++  P+       VA++    + KFGD+QCN+AM L  I K KG + K P 
Sbjct: 15  LAKLFDVSLKLTVPDEPSVEPLVAASA---LGKFGDYQCNNAMGLWSIIKGKGTQFKGPP 71

Query: 270 DIAQSIA-SVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQ-- 326
            + Q++  S+ TSE+         ++   VA PGF+NV LS  +  + I+++++NGV   
Sbjct: 72  AVGQALVKSLPTSEM---------VESCSVAGPGFINVVLSAKWMAKSIENMLINGVDTW 122

Query: 327 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 386
            PTL+ K R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+LEY   +V+R NHVGDWGTQ
Sbjct: 123 APTLSVK-RAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEYSNVEVLRRNHVGDWGTQ 181

Query: 387 FGMLIAHLQDKFPDY-LTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445
           FGMLI +L +KFPD        I DLQ FYK SK +FD DE FK+RA Q VV LQ  DP 
Sbjct: 182 FGMLIEYLFEKFPDTDSVTETAIGDLQVFYKASKHKFDLDEDFKERAQQAVVRLQGGDPV 241

Query: 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
           Y+KAW  ICD+SR +F K+Y RL V L E+GESFY  ++ +++  L  KGL+E  +G ++
Sbjct: 242 YRKAWAKICDISRTEFAKVYQRLRVELEEKGESFYNPYIAKVIEELNSKGLVEESEGARV 301

Query: 506 MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEES 565
           ++ E    IP+ +VKSDGGF Y ++DL A+  R+ EEKA+WI+YVTD+GQ  HF +  ++
Sbjct: 302 IFLEGF-DIPLMVVKSDGGFNYASTDLTALWYRLNEEKAEWIIYVTDVGQQQHFNMFFKA 360

Query: 566 TIIGDTISRLLEYLGHD---VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 622
                  +R   +L  +     R+NHVG     FG+++     +F    T++  +  L  
Sbjct: 361 -------ARKAGWLPDNDKTYPRVNHVG-----FGLVLGEDGKRFR---TRATDVVRLVD 405

Query: 623 FYKESKKR 630
              E+K R
Sbjct: 406 LLDEAKTR 413



 Score =  300 bits (767), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 164/340 (48%), Positives = 210/340 (61%), Gaps = 45/340 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAF 623
           STIIGDT++R+LEY   +V+R NHVGDWGTQFGMLI +L +KFPD        I DLQ F
Sbjct: 151 STIIGDTLARMLEYSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPDTDSVTETAIGDLQVF 210

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK +FD DE FK+RA Q VV LQ  DP Y+KAW  ICD+SR +F K+Y RL V L E
Sbjct: 211 YKASKHKFDLDEDFKERAQQAVVRLQGGDPVYRKAWAKICDISRTEFAKVYQRLRVELEE 270

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++ +++  L  KG                                       
Sbjct: 271 KGESFYNPYIAKVIEELNSKGLVEESEGARVIFLEGFDIPLMVVKSDGGFNYASTDLTAL 330

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPN-KT--RMDFVGFGVVLGEDR 759
              L+  K   I+YVTD+GQ  HF +  + A+KAG L  N KT  R++ VGFG+VLGED 
Sbjct: 331 WYRLNEEKAEWIIYVTDVGQQQHFNMFFKAARKAGWLPDNDKTYPRVNHVGFGLVLGEDG 390

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TR+ D V+L +LLDE   RS   L ++ +  E TP EL +  +AV YG +KYADL 
Sbjct: 391 KRFRTRATDVVRLVDLLDEAKTRSKLALIERGKDKEWTPEELDQTAEAVGYGAVKYADLK 450

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           +NR  +Y FSFD+ML+D+GNTAVYLLYA+ RI SI R +G
Sbjct: 451 NNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSG 490



 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 116/188 (61%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E TP EL +  +AV YG +KYADL +NR  +Y FSFD+ML+D+GNTA
Sbjct: 413  RSKLALIERGKDKEWTPEELDQTAEAVGYGAVKYADLKNNRLTNYTFSFDQMLNDKGNTA 472

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G + ++LR   ++  ++L+H  E AL   LLR  + +     +
Sbjct: 473  VYLLYAHARICSIIRKSGKDIDELR---KTGKLALDHADERALGLHLLRFAETVEEACTN 529

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L    LCEYLY++S  ++ FY NC       E       T RLLL EATA VM+KCF +L
Sbjct: 530  LLPSVLCEYLYNLSEHYTRFYSNCQVNGSPEE-------TSRLLLCEATAIVMRKCFHLL 582

Query: 1112 NIRTVHKM 1119
             I  V+K+
Sbjct: 583  GITPVYKI 590



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 84/142 (59%), Gaps = 17/142 (11%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK-KNPF 73
           L+ +F  ++++  P+       VA++    + KFGD+QCN+AM L  I K KG + K P 
Sbjct: 15  LAKLFDVSLKLTVPDEPSVEPLVAASA---LGKFGDYQCNNAMGLWSIIKGKGTQFKGPP 71

Query: 74  DIAQS-IASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQ-- 130
            + Q+ + S+ TSE+         ++    A PGF+NV LS  +  + ++++++NGV   
Sbjct: 72  AVGQALVKSLPTSEM---------VESCSVAGPGFINVVLSAKWMAKSIENMLINGVDTW 122

Query: 131 PPTLNKKLRVLVDFSSPNIARK 152
            PTL+ K R +VDFSSPNIA++
Sbjct: 123 APTLSVK-RAVVDFSSPNIAKE 143


>gi|2632106|emb|CAB11469.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 590

 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/433 (43%), Positives = 272/433 (62%), Gaps = 37/433 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           +++  L+ +F  ++++  P+       VA++    + KFGD+QCN+AM L  I K KG +
Sbjct: 10  NLKRQLAKLFDVSLKLTVPDEPSVEPLVAASA---LGKFGDYQCNNAMGLWSIIKGKGTQ 66

Query: 266 -KNPFDIAQSIA-SVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
            K P  + Q++  S+ TSE+         ++   VA PGF+NV LS  +  + I++++++
Sbjct: 67  FKGPPAVGQALVKSLPTSEM---------VESCSVAGPGFINVVLSAKWMAKSIENMLID 117

Query: 324 GVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
           GV    PTL+ K R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+LEY   +V+R NHVG
Sbjct: 118 GVDTWAPTLSVK-RAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEYSHVEVLRRNHVG 176

Query: 382 DWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           DWGTQFGMLI +L +KFPD        I DLQ FYK SK +FD DE FK++A Q VV LQ
Sbjct: 177 DWGTQFGMLIEYLFEKFPDTDSVTETAIGDLQVFYKASKHKFDLDEAFKEKAQQAVVRLQ 236

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
             DP Y+KAW  ICD+SR +F K+Y RL V L E+GESFY  H+ +++  L  KGL+E  
Sbjct: 237 GGDPVYRKAWAKICDISRTEFAKVYQRLRVELEEKGESFYNPHIAKVIEELNSKGLVEES 296

Query: 501 DGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +G ++++ E    IP+ +VKSDGGF Y ++DL A+  R+ EEKA+WI+YVTD+GQ  HF 
Sbjct: 297 EGARVIFLEGF-DIPLMVVKSDGGFNYASTDLTALWYRLNEEKAEWIIYVTDVGQQQHFN 355

Query: 561 LLEESTIIGDTISRLLEYLGHD---VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           +  ++       +R   +L  +     R+NHVG     FG+++     +F    T++  +
Sbjct: 356 MFFKA-------ARKAGWLPDNDKTYPRVNHVG-----FGLVLGEDGKRFR---TRATDV 400

Query: 618 ADLQAFYKESKKR 630
             L     E+K R
Sbjct: 401 VRLVDLLDEAKTR 413



 Score =  301 bits (771), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/340 (48%), Positives = 210/340 (61%), Gaps = 45/340 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAF 623
           STIIGDT++R+LEY   +V+R NHVGDWGTQFGMLI +L +KFPD        I DLQ F
Sbjct: 151 STIIGDTLARMLEYSHVEVLRRNHVGDWGTQFGMLIEYLFEKFPDTDSVTETAIGDLQVF 210

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK +FD DE FK++A Q VV LQ  DP Y+KAW  ICD+SR +F K+Y RL V L E
Sbjct: 211 YKASKHKFDLDEAFKEKAQQAVVRLQGGDPVYRKAWAKICDISRTEFAKVYQRLRVELEE 270

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  H+ +++  L  KG                                       
Sbjct: 271 KGESFYNPHIAKVIEELNSKGLVEESEGARVIFLEGFDIPLMVVKSDGGFNYASTDLTAL 330

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPN-KT--RMDFVGFGVVLGEDR 759
              L+  K   I+YVTD+GQ  HF +  + A+KAG L  N KT  R++ VGFG+VLGED 
Sbjct: 331 WYRLNEEKAEWIIYVTDVGQQQHFNMFFKAARKAGWLPDNDKTYPRVNHVGFGLVLGEDG 390

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TR+ D V+L +LLDE   RS   L ++ +  E TP EL +  +AV YG +KYADL 
Sbjct: 391 KRFRTRATDVVRLVDLLDEAKTRSKLALIERGKDKEWTPEELDQTAEAVGYGAVKYADLK 450

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           +NR  +Y FSFD+ML+D+GNTAVYLLYA+ RI SI R +G
Sbjct: 451 NNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSG 490



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 116/188 (61%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E TP EL +  +AV YG +KYADL +NR  +Y FSFD+ML+D+GNTA
Sbjct: 413  RSKLALIERGKDKEWTPEELDQTAEAVGYGAVKYADLKNNRLTNYTFSFDQMLNDKGNTA 472

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G + ++L+   ++  ++L+H  E AL   LLR  + +     +
Sbjct: 473  VYLLYAHARICSIIRKSGKDIDELK---KTGKLALDHADERALGLHLLRFAETVEEACTN 529

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L    LCEYLY++S  F+ FY NC       E       T RLLL EATA VM+KCF +L
Sbjct: 530  LLPSVLCEYLYNLSEHFTRFYSNCQVNGSPEE-------TSRLLLCEATAIVMRKCFHLL 582

Query: 1112 NIRTVHKM 1119
             I  V+K+
Sbjct: 583  GITPVYKI 590



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 87/147 (59%), Gaps = 17/147 (11%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           +++  L+ +F  ++++  P+       VA++    + KFGD+QCN+AM L  I K KG +
Sbjct: 10  NLKRQLAKLFDVSLKLTVPDEPSVEPLVAASA---LGKFGDYQCNNAMGLWSIIKGKGTQ 66

Query: 70  -KNPFDIAQS-IASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
            K P  + Q+ + S+ TSE+         ++    A PGF+NV LS  +  + +++++++
Sbjct: 67  FKGPPAVGQALVKSLPTSEM---------VESCSVAGPGFINVVLSAKWMAKSIENMLID 117

Query: 128 GVQ--PPTLNKKLRVLVDFSSPNIARK 152
           GV    PTL+ K R +VDFSSPNIA++
Sbjct: 118 GVDTWAPTLSVK-RAVVDFSSPNIAKE 143


>gi|15236164|ref|NP_194360.1| Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]
 gi|2632105|emb|CAB11468.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
 gi|4539426|emb|CAB38959.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
 gi|7269482|emb|CAB79485.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
 gi|332659782|gb|AEE85182.1| Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]
          Length = 642

 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/433 (43%), Positives = 272/433 (62%), Gaps = 37/433 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           +++  L+ +F  ++++  P+       VA++    + KFGD+QCN+AM L  I K KG +
Sbjct: 62  NLKRQLAKLFDVSLKLTVPDEPSVEPLVAASA---LGKFGDYQCNNAMGLWSIIKGKGTQ 118

Query: 266 -KNPFDIAQSIA-SVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
            K P  + Q++  S+ TSE+         ++   VA PGF+NV LS  +  + I++++++
Sbjct: 119 FKGPPAVGQALVKSLPTSEM---------VESCSVAGPGFINVVLSAKWMAKSIENMLID 169

Query: 324 GVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
           GV    PTL+ K R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+LEY   +V+R NHVG
Sbjct: 170 GVDTWAPTLSVK-RAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEYSHVEVLRRNHVG 228

Query: 382 DWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           DWGTQFGMLI +L +KFPD        I DLQ FYK SK +FD DE FK++A Q VV LQ
Sbjct: 229 DWGTQFGMLIEYLFEKFPDTDSVTETAIGDLQVFYKASKHKFDLDEAFKEKAQQAVVRLQ 288

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
             DP Y+KAW  ICD+SR +F K+Y RL V L E+GESFY  H+ +++  L  KGL+E  
Sbjct: 289 GGDPVYRKAWAKICDISRTEFAKVYQRLRVELEEKGESFYNPHIAKVIEELNSKGLVEES 348

Query: 501 DGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +G ++++ E    IP+ +VKSDGGF Y ++DL A+  R+ EEKA+WI+YVTD+GQ  HF 
Sbjct: 349 EGARVIFLEGF-DIPLMVVKSDGGFNYASTDLTALWYRLNEEKAEWIIYVTDVGQQQHFN 407

Query: 561 LLEESTIIGDTISRLLEYLGHD---VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           +  ++       +R   +L  +     R+NHVG     FG+++     +F    T++  +
Sbjct: 408 MFFKA-------ARKAGWLPDNDKTYPRVNHVG-----FGLVLGEDGKRFR---TRATDV 452

Query: 618 ADLQAFYKESKKR 630
             L     E+K R
Sbjct: 453 VRLVDLLDEAKTR 465



 Score =  301 bits (771), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/340 (48%), Positives = 210/340 (61%), Gaps = 45/340 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAF 623
           STIIGDT++R+LEY   +V+R NHVGDWGTQFGMLI +L +KFPD        I DLQ F
Sbjct: 203 STIIGDTLARMLEYSHVEVLRRNHVGDWGTQFGMLIEYLFEKFPDTDSVTETAIGDLQVF 262

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK +FD DE FK++A Q VV LQ  DP Y+KAW  ICD+SR +F K+Y RL V L E
Sbjct: 263 YKASKHKFDLDEAFKEKAQQAVVRLQGGDPVYRKAWAKICDISRTEFAKVYQRLRVELEE 322

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  H+ +++  L  KG                                       
Sbjct: 323 KGESFYNPHIAKVIEELNSKGLVEESEGARVIFLEGFDIPLMVVKSDGGFNYASTDLTAL 382

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPN-KT--RMDFVGFGVVLGEDR 759
              L+  K   I+YVTD+GQ  HF +  + A+KAG L  N KT  R++ VGFG+VLGED 
Sbjct: 383 WYRLNEEKAEWIIYVTDVGQQQHFNMFFKAARKAGWLPDNDKTYPRVNHVGFGLVLGEDG 442

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TR+ D V+L +LLDE   RS   L ++ +  E TP EL +  +AV YG +KYADL 
Sbjct: 443 KRFRTRATDVVRLVDLLDEAKTRSKLALIERGKDKEWTPEELDQTAEAVGYGAVKYADLK 502

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           +NR  +Y FSFD+ML+D+GNTAVYLLYA+ RI SI R +G
Sbjct: 503 NNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSG 542



 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 116/188 (61%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E TP EL +  +AV YG +KYADL +NR  +Y FSFD+ML+D+GNTA
Sbjct: 465  RSKLALIERGKDKEWTPEELDQTAEAVGYGAVKYADLKNNRLTNYTFSFDQMLNDKGNTA 524

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G + ++L+   ++  ++L+H  E AL   LLR  + +     +
Sbjct: 525  VYLLYAHARICSIIRKSGKDIDELK---KTGKLALDHADERALGLHLLRFAETVEEACTN 581

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L    LCEYLY++S  F+ FY NC       E       T RLLL EATA VM+KCF +L
Sbjct: 582  LLPSVLCEYLYNLSEHFTRFYSNCQVNGSPEE-------TSRLLLCEATAIVMRKCFHLL 634

Query: 1112 NIRTVHKM 1119
             I  V+K+
Sbjct: 635  GITPVYKI 642



 Score = 80.1 bits (196), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 87/147 (59%), Gaps = 17/147 (11%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           +++  L+ +F  ++++  P+       VA++    + KFGD+QCN+AM L  I K KG +
Sbjct: 62  NLKRQLAKLFDVSLKLTVPDEPSVEPLVAASA---LGKFGDYQCNNAMGLWSIIKGKGTQ 118

Query: 70  -KNPFDIAQS-IASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
            K P  + Q+ + S+ TSE+         ++    A PGF+NV LS  +  + +++++++
Sbjct: 119 FKGPPAVGQALVKSLPTSEM---------VESCSVAGPGFINVVLSAKWMAKSIENMLID 169

Query: 128 GVQ--PPTLNKKLRVLVDFSSPNIARK 152
           GV    PTL+ K R +VDFSSPNIA++
Sbjct: 170 GVDTWAPTLSVK-RAVVDFSSPNIAKE 195


>gi|209875223|ref|XP_002139054.1| arginyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
 gi|209554660|gb|EEA04705.1| arginyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
          Length = 603

 Score =  328 bits (841), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 172/407 (42%), Positives = 260/407 (63%), Gaps = 33/407 (8%)

Query: 211 LSDVFTHAVQVAFPELGDKTA-SVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 269
           + +VF  +++  FPE  ++   S+++ N      FGD+QCN  M +          K+P 
Sbjct: 8   IKEVFNKSIKSLFPEYENEAVISISNPN------FGDYQCNSGMLIFSTIGKSMGMKSPR 61

Query: 270 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT 329
           +I + I   + S+    P+   + D I VA  GF+ V +S  +  + +++I+  G    T
Sbjct: 62  EIGEKIKQFIMSD----PNSNFLFDSIIVAPQGFITVKISTDFLRKNLQNILQRGEIQVT 117

Query: 330 L---------NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
           L         +KKL+VLVDFSSPNIAKEMHVGHLRSTIIGDTI R+ EYLG++V R+NHV
Sbjct: 118 LSSSPVKIIEDKKLKVLVDFSSPNIAKEMHVGHLRSTIIGDTICRIFEYLGYEVFRINHV 177

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGMLI +L++++PDY +  P I+DLQ FY+ +KK+FD+D  FK R+ + VV LQ
Sbjct: 178 GDWGTQFGMLIEYLKEQYPDYTSNIPEISDLQEFYRSAKKKFDQDPEFKLRSQKVVVKLQ 237

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
             DP  + AW+ IC++SR +FQK+YDRLN+ + E GESFY   + +++  +++KG+++LD
Sbjct: 238 GGDPTARAAWKKICEISRIEFQKVYDRLNIHIEEYGESFYNDLIPEVILKMKEKGIIQLD 297

Query: 501 DGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           DG + ++     +IP+  VKSDGG+ YD++DLAAI  R++E +ADW++Y+TD GQ  HF 
Sbjct: 298 DGAQCIF-TSVNNIPLMAVKSDGGYGYDSTDLAAIYYRLKEIRADWVIYITDSGQEEHFL 356

Query: 561 LLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
            + E       +++++E+      RL+ VG     FG++      KF
Sbjct: 357 KIFE-------VAKIMEWHNPPKTRLDFVG-----FGVIQGEDGKKF 391



 Score =  306 bits (783), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 158/348 (45%), Positives = 218/348 (62%), Gaps = 48/348 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDTI R+ EYLG++V R+NHVGDWGTQFGMLI +L++++PDY +  P I+DLQ FY
Sbjct: 153 STIIGDTICRIFEYLGYEVFRINHVGDWGTQFGMLIEYLKEQYPDYTSNIPEISDLQEFY 212

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK+FD+D  FK R+ + VV LQ  DP  + AW+ IC++SR +FQK+YDRLN+ + E 
Sbjct: 213 RSAKKKFDQDPEFKLRSQKVVVKLQGGDPTARAAWKKICEISRIEFQKVYDRLNIHIEEY 272

Query: 685 GESFYQKHMEQLVPYLEKKGNLSL------------------TKKLG------------- 713
           GESFY   + +++  +++KG + L                   K  G             
Sbjct: 273 GESFYNDLIPEVILKMKEKGIIQLDDGAQCIFTSVNNIPLMAVKSDGGYGYDSTDLAAIY 332

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++Y+TD GQ  HF  + E AK     NP KTR+DFVGFGV+ GED KKFK
Sbjct: 333 YRLKEIRADWVIYITDSGQEEHFLKIFEVAKIMEWHNPPKTRLDFVGFGVIQGEDGKKFK 392

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDK-------NRHTELTPTELSEAQQAVAYGCIKYA 816
           TRSGDTVKL ELLDE + R+ ++L ++       N + E    +L E  + + Y  +KY 
Sbjct: 393 TRSGDTVKLVELLDEAVTRAYNELINRRLQNAKINGNIEYEDDDLKEMAKKIGYAAVKYF 452

Query: 817 DLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           D+  NR  +Y FSFD+MLD +GNTAVYLLYAY R+ +I R +G+N ++
Sbjct: 453 DMKQNRLTNYKFSFDRMLDPKGNTAVYLLYAYARLCAIFRRSGLNLDN 500



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 100/183 (54%), Gaps = 10/183 (5%)

Query: 941  NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
            N + E    +L E  + + Y  +KY D+  NR  +Y FSFD+MLD +GNTAVYLLYAY R
Sbjct: 427  NGNIEYEDDDLKEMAKKIGYAAVKYFDMKQNRLTNYKFSFDRMLDPKGNTAVYLLYAYAR 486

Query: 1001 IASIARTAGI---NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHL 1057
            + +I R +G+   N  D+ + + S  ++++  +E  +A  ++R  +V   +  DL ++ L
Sbjct: 487  LCAIFRRSGLNLDNKSDIEILS-SYSINIQQSEERLIALKIIRFPEVFDGIIVDLHINRL 545

Query: 1058 CEYLYDISTAFSEFYDNCYCIE-KDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTV 1116
             EY Y++    ++FY +C  ++  D E     +   RL L     KV+    ++L I  +
Sbjct: 546  TEYCYELCELVAQFYASCRILDCNDPE-----IRQSRLALCFIIKKVLLVALNLLGIEPL 600

Query: 1117 HKM 1119
             K+
Sbjct: 601  EKI 603



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 20/148 (13%)

Query: 15  LSDVFTHAVQVAFPELGDKTA-SVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 73
           + +VF  +++  FPE  ++   S+++ N      FGD+QCN  M +          K+P 
Sbjct: 8   IKEVFNKSIKSLFPEYENEAVISISNPN------FGDYQCNSGMLIFSTIGKSMGMKSPR 61

Query: 74  DIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPT 133
           +I + I   + S+    P+   + D I  A  GF+ V +S  +  + +++I+  G    T
Sbjct: 62  EIGEKIKQFIMSD----PNSNFLFDSIIVAPQGFITVKISTDFLRKNLQNILQRGEIQVT 117

Query: 134 L---------NKKLRVLVDFSSPNIARK 152
           L         +KKL+VLVDFSSPNIA++
Sbjct: 118 LSSSPVKIIEDKKLKVLVDFSSPNIAKE 145


>gi|298710528|emb|CBJ25592.1| Arginyl-tRNA Synthetase [Ectocarpus siliculosus]
          Length = 906

 Score =  328 bits (841), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 175/401 (43%), Positives = 245/401 (61%), Gaps = 13/401 (3%)

Query: 187 SSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGD 246
           ++ T  T  K +  VS +  ++  L  +F  A+  A+P       + +S  +   +K GD
Sbjct: 304 AASTIDTFTKASKGVSLKAGLQASLLAMFDAAMFKAWPLAKSAGITSSSVRKCADYKNGD 363

Query: 247 FQCNDAMALCKIFKDK-GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVN 305
           FQCN AMAL K  K   G   +P    Q+ AS + + L  NP    ++D   V+  G++N
Sbjct: 364 FQCNAAMALFKALKGGDGAPSSP----QAAASAIVASLPVNP----LVDTTSVSPQGYIN 415

Query: 306 VFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISR 365
           + L   +  + I  +I NG  PP + KK+RV+VDFSSPNIAKEMHVGHLRSTIIG+ I R
Sbjct: 416 IRLRPAFINQSIAKVIKNGPAPPEV-KKMRVVVDFSSPNIAKEMHVGHLRSTIIGEAICR 474

Query: 366 LLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDED 425
           +LE+ GH V R NHVGDWGTQFGMLI ++++ +P++LT  P I DL  FYK +K RFDE 
Sbjct: 475 VLEFCGHTVFRHNHVGDWGTQFGMLINYMKEAYPNFLTDPPNITDLTTFYKAAKLRFDES 534

Query: 426 EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHME 485
           E FK+ +   VV LQ  DP  K+ W ++CD+SR++FQK+YDRL+VTL E GESFY   + 
Sbjct: 535 EEFKEASRNTVVDLQSGDPACKEVWTLLCDISRKEFQKVYDRLDVTLEEHGESFYNDMIP 594

Query: 486 QLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKAD 545
             +  L + GL+  DDG  I+  E   + P+ + K DGGF YD++D+ AIR R++  K D
Sbjct: 595 STIDMLAEAGLVSRDDGADIVRLE-HFTYPLIVRKRDGGFGYDSTDMTAIRYRLKTLKCD 653

Query: 546 WIVYVTDLGQGVHFRLLEESTIIGDTI--SRLLEYLGHDVV 584
           WI+ +TD GQ  HF +  ++      +     LE+LG  VV
Sbjct: 654 WIIGITDAGQASHFHMCFDAARAAGWVDEGTKLEHLGFGVV 694



 Score =  277 bits (708), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 147/340 (43%), Positives = 205/340 (60%), Gaps = 48/340 (14%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIG+ I R+LE+ GH V R NHVGDWGTQFGMLI ++++ +P++LT  P I
Sbjct: 462 HLR----STIIGEAICRVLEFCGHTVFRHNHVGDWGTQFGMLINYMKEAYPNFLTDPPNI 517

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL  FYK +K RFDE E FK+ +   VV LQ  DP  K+ W ++CD+SR++FQK+YDRL
Sbjct: 518 TDLTTFYKAAKLRFDESEEFKEASRNTVVDLQSGDPACKEVWTLLCDISRKEFQKVYDRL 577

Query: 678 NVTLTERGESFYQKHMEQLVPYLEKKGNLS------------------LTKKLG------ 713
           +VTL E GESFY   +   +  L + G +S                  + K+ G      
Sbjct: 578 DVTLEEHGESFYNDMIPSTIDMLAEAGLVSRDDGADIVRLEHFTYPLIVRKRDGGFGYDS 637

Query: 714 -----------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLG 756
                            I+ +TD GQ  HF +  + A+ AG ++   T+++ +GFGVVLG
Sbjct: 638 TDMTAIRYRLKTLKCDWIIGITDAGQASHFHMCFDAARAAGWVD-EGTKLEHLGFGVVLG 696

Query: 757 EDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIK 814
            D KKFKTRSGDTV+L +LLDE +RR    ++++    ++T T+   + A   + YG +K
Sbjct: 697 PDGKKFKTRSGDTVRLVDLLDEAVRRMAASIQERMDEGKMTTTKEAAAAAAAEIGYGAVK 756

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           Y DL  + +  YVFS+D+MLD RGNTAVYL +A+ R+ASI
Sbjct: 757 YYDLRQHPSTSYVFSYDRMLDTRGNTAVYLQFAHARLASI 796



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/197 (39%), Positives = 117/197 (59%), Gaps = 17/197 (8%)

Query: 930  LRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDR 987
            +RR    ++++    ++T T+   + A   + YG +KY DL  + +  YVFS+D+MLD R
Sbjct: 720  VRRMAASIQERMDEGKMTTTKEAAAAAAAEIGYGAVKYYDLRQHPSTSYVFSYDRMLDTR 779

Query: 988  GNTAVYLLYAYTRIASIARTAGINSEDLRV---AAQSTP--VSLEHEKEFALAKTLLRMN 1042
            GNTAVYL +A+ R+ASI   A    ++L V   A +++P  VS+EHE E ALA  LL  +
Sbjct: 780  GNTAVYLQFAHARLASILLKA---QDELHVDVTALKASPEKVSVEHESERALAFELLMFS 836

Query: 1043 DVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAK 1102
            DV+     DL  + LCEYLY ++T F++F  NC  +  D +       T RLLL EAT  
Sbjct: 837  DVIEACLADLGPNRLCEYLYTLATKFTDFVTNCRVLGSDEQ-------TSRLLLCEATGV 889

Query: 1103 VMKKCFDILNIRTVHKM 1119
             M+KCF +L ++ + ++
Sbjct: 890  TMRKCFSLLGMKALDRI 906



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 10/146 (6%)

Query: 8   RMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK- 66
           +  ++  L  +F  A+  A+P       + +S  +   +K GDFQCN AMAL K  K   
Sbjct: 321 KAGLQASLLAMFDAAMFKAWPLAKSAGITSSSVRKCADYKNGDFQCNAAMALFKALKGGD 380

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
           G   +P    Q+ AS + + L  NP    ++D    +  G++N+ L   +  + +  +I 
Sbjct: 381 GAPSSP----QAAASAIVASLPVNP----LVDTTSVSPQGYINIRLRPAFINQSIAKVIK 432

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIARK 152
           NG  PP + KK+RV+VDFSSPNIA++
Sbjct: 433 NGPAPPEV-KKMRVVVDFSSPNIAKE 457


>gi|300122665|emb|CBK23232.2| unnamed protein product [Blastocystis hominis]
          Length = 601

 Score =  326 bits (835), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 178/425 (41%), Positives = 263/425 (61%), Gaps = 28/425 (6%)

Query: 201 VSDRMSVRDYLSDVFTHAVQVAFPEL---GDKTASVASTNEKYVHKFGDFQCNDAMALCK 257
           +++  S+   ++ +FT A++ +FP+L    +      +TN K  H   D+QCN AM L K
Sbjct: 4   IAEGSSLISIVTGLFTKAIRDSFPDLEISSNDCLISQNTNAKMKH---DYQCNSAMGLTK 60

Query: 258 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 317
             +    K+N     +    ++   L      ++ ++K E+A PGF+N++L + +  + I
Sbjct: 61  KLQALRGKENAPKNPRECGQIIIDHLPE----SEFVEKTELAGPGFINLYLKKSWVAQHI 116

Query: 318 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
             I+ +G  PP   +K RV++D+SSPNIAK+MHVGHLRSTIIGD+++R+LE+ GH+V+R+
Sbjct: 117 LSILNHGFVPPPTERK-RVIIDYSSPNIAKDMHVGHLRSTIIGDSLARILEFCGHEVIRI 175

Query: 378 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           NHVGDWGTQFGMLIAHLQD  PD+ T  P I DL  FYK +K +FDED+ F++RA+Q VV
Sbjct: 176 NHVGDWGTQFGMLIAHLQDIAPDFETNPPSIEDLTVFYKAAKCKFDEDKAFQERAHQEVV 235

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV--TLTERGESFYQKHMEQLVPYLEKKG 495
            LQ   P     W+ +C VS + F K+Y  LNV   L   GESFY   +  +V  L+ KG
Sbjct: 236 NLQSGVPKNLAMWKTLCSVSEKMFSKVYKMLNVDPRLKMMGESFYNPLLPAMVKELDAKG 295

Query: 496 LLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
           LL+  DG K+++ +    +P+ I KSDGGF YD++D+ AI+ RI+E KADWI+YV D GQ
Sbjct: 296 LLQDSDGAKVLFPQGF-EVPLIIQKSDGGFGYDSTDMTAIKYRIQEMKADWIIYVVDSGQ 354

Query: 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP 615
            +HF+ + ++       +R   ++G   VRL+HVG     FG++    + KF     KS 
Sbjct: 355 ALHFQQVFQA-------ARDAGWVGS--VRLDHVG-----FGVVQGEDKKKFKTRAGKSV 400

Query: 616 PIADL 620
            + DL
Sbjct: 401 RLVDL 405



 Score =  256 bits (655), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 145/340 (42%), Positives = 194/340 (57%), Gaps = 48/340 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++R+LE+ GH+V+R+NHVGDWGTQFGMLIAHLQD  PD+ T  P I DL  FY
Sbjct: 154 STIIGDSLARILEFCGHEVIRINHVGDWGTQFGMLIAHLQDIAPDFETNPPSIEDLTVFY 213

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV--TLT 682
           K +K +FDED+ F++RA+Q VV LQ   P     W+ +C VS + F K+Y  LNV   L 
Sbjct: 214 KAAKCKFDEDKAFQERAHQEVVNLQSGVPKNLAMWKTLCSVSEKMFSKVYKMLNVDPRLK 273

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLS------------------LTKKLG----------- 713
             GESFY   +  +V  L+ KG L                   + K  G           
Sbjct: 274 MMGESFYNPLLPAMVKELDAKGLLQDSDGAKVLFPQGFEVPLIIQKSDGGFGYDSTDMTA 333

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                       I+YV D GQ +HF+ + + A+ AG +     R+D VGFGVV GED+KK
Sbjct: 334 IKYRIQEMKADWIIYVVDSGQALHFQQVFQAARDAGWV--GSVRLDHVGFGVVQGEDKKK 391

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDK---NRHTELTPTELSEAQQAVAYGCIKYADL 818
           FKTR+G +V+L +LL+E   ++   +K +          P E+ EA   + YG +KY DL
Sbjct: 392 FKTRAGKSVRLVDLLNEAAEKATAIMKKRVEDGVSGVSDPKEIEEAAAQLGYGGVKYFDL 451

Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
             NR  DYVFSF++ML   G+T VYL Y++ R  SI R A
Sbjct: 452 RQNRLSDYVFSFERMLSPEGDTNVYLQYSHARCMSIIRKA 491



 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 100/172 (58%), Gaps = 10/172 (5%)

Query: 948  PTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIART 1007
            P E+ EA   + YG +KY DL  NR  DYVFSF++ML   G+T VYL Y++ R  SI R 
Sbjct: 431  PKEIEEAAAQLGYGGVKYFDLRQNRLSDYVFSFERMLSPEGDTNVYLQYSHARCMSIIRK 490

Query: 1008 AGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTA 1067
            A    E+L+   + T ++LEH  E+ LA  +LR +DVL  V  DL  + +C+Y+YD+S  
Sbjct: 491  APEEVEELK---KHTQITLEHPSEWDLACYILRFSDVLEQVPMDLMPNRICKYIYDLSIK 547

Query: 1068 FSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             + FY +C  I    +         RLLL  A  KVM++ FD+L I T+ K+
Sbjct: 548  LNGFYRDCRVIGSPEQ-------NSRLLLVAAAEKVMRQGFDLLGIVTLDKI 592



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 11/145 (7%)

Query: 10  SVRDYLSDVFTHAVQVAFPEL---GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           S+   ++ +FT A++ +FP+L    +      +TN K  H   D+QCN AM L K  +  
Sbjct: 9   SLISIVTGLFTKAIRDSFPDLEISSNDCLISQNTNAKMKH---DYQCNSAMGLTKKLQAL 65

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
             K+N     +    ++   L      ++ ++K E A PGF+N++L + +  + +  I+ 
Sbjct: 66  RGKENAPKNPRECGQIIIDHLPE----SEFVEKTELAGPGFINLYLKKSWVAQHILSILN 121

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAR 151
           +G  PP   +K RV++D+SSPNIA+
Sbjct: 122 HGFVPPPTERK-RVIIDYSSPNIAK 145


>gi|301114575|ref|XP_002999057.1| arginyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
 gi|262111151|gb|EEY69203.1| arginyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
          Length = 815

 Score =  326 bits (835), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 180/453 (39%), Positives = 267/453 (58%), Gaps = 27/453 (5%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK-GE 264
           ++ + +  +F  A++ A+P L      V  TN K   KFGD+QCN AM++    K     
Sbjct: 232 NILEVVESLFDAAIKAAYPGLDVPPVEVTRTNVKNA-KFGDYQCNSAMSIFTALKGTPNA 290

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            ++P D+A +I       +A  P   +V+D++ VA  GF+N FL++ +   ++++++ NG
Sbjct: 291 ARSPRDVANTI-------IAAMPE-TRVLDRLTVAGAGFINAFLTKEFVAARLQNVLANG 342

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           VQP    KK  ++VDFSSPNIAK+MHVGHLRSTIIGDT+SR+LE+ G+DV R+NHVGDWG
Sbjct: 343 VQPAP-QKKQTIVVDFSSPNIAKDMHVGHLRSTIIGDTMSRILEFQGYDVKRINHVGDWG 401

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLI HL + +P + T+ P + DL   YK +K+RFD D  F +R+   VV LQ  D 
Sbjct: 402 TQFGMLICHLTETYPTWETEMPNVTDLTKLYKAAKERFDADADFHERSKAQVVLLQSGDE 461

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           + +K WE +C++SRR+FQK+YDRL V+L E GESFY   +  ++  L  KG++E+ +G +
Sbjct: 462 NSRKVWETLCEISRREFQKVYDRLGVSLNEMGESFYNPIIPDVLAKLRAKGIVEMSNGAE 521

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           +++ +     P  +VKSDG + YDT+D+AA+  R+ E KAD I+Y TD  Q  HF LL E
Sbjct: 522 VVFTKAFKQ-PFMLVKSDGSYLYDTTDIAALWYRLHEMKADRIIYYTDYTQKDHFSLLFE 580

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
                  + R+         R +HVG     FG +      +F    T+S     L    
Sbjct: 581 -------VGRMSGIYDPTKQRADHVG-----FGTVNDESGKRFK---TRSGKTVRLVELL 625

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 657
            E+K R     + +  A Q  + + + D   +K
Sbjct: 626 DEAKVRMKAQLVERIEAGQTSLPMDQVDAAAEK 658



 Score =  273 bits (699), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 144/340 (42%), Positives = 198/340 (58%), Gaps = 43/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDT+SR+LE+ G+DV R+NHVGDWGTQFGMLI HL + +P + T+ P + DL   Y
Sbjct: 373 STIIGDTMSRILEFQGYDVKRINHVGDWGTQFGMLICHLTETYPTWETEMPNVTDLTKLY 432

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K +K+RFD D  F +R+   VV LQ  D + +K WE +C++SRR+FQK+YDRL V+L E 
Sbjct: 433 KAAKERFDADADFHERSKAQVVLLQSGDENSRKVWETLCEISRREFQKVYDRLGVSLNEM 492

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLT----------------------------------- 709
           GESFY   +  ++  L  KG + ++                                   
Sbjct: 493 GESFYNPIIPDVLAKLRAKGIVEMSNGAEVVFTKAFKQPFMLVKSDGSYLYDTTDIAALW 552

Query: 710 ------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                 K   I+Y TD  Q  HF LL E  + +GI +P K R D VGFG V  E  K+FK
Sbjct: 553 YRLHEMKADRIIYYTDYTQKDHFSLLFEVGRMSGIYDPTKQRADHVGFGTVNDESGKRFK 612

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNR--HTELTPTELSEAQQAVAYGCIKYADLSHN 821
           TRSG TV+L ELLDE   R   +L ++     T L   ++  A + + YG +KY DL  +
Sbjct: 613 TRSGKTVRLVELLDEAKVRMKAQLVERIEAGQTSLPMDQVDAAAEKLGYGAVKYFDLRQS 672

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
              +Y+FSFD+ML   G+TAVYL++AY R++SI R +G++
Sbjct: 673 PTSNYIFSFDRMLSTNGDTAVYLMFAYARLSSIIRKSGVD 712



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 9/173 (5%)

Query: 943  HTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIA 1002
             T L   ++  A + + YG +KY DL  +   +Y+FSFD+ML   G+TAVYL++AY R++
Sbjct: 644  QTSLPMDQVDAAAEKLGYGAVKYFDLRQSPTSNYIFSFDRMLSTNGDTAVYLMFAYARLS 703

Query: 1003 SIARTAGINSEDL--RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
            SI R +G++   L  ++  +   +  EH  E ALA  LL++ DV++ + +DL  + LC Y
Sbjct: 704  SIIRKSGVDMSALVAQLQKEGNVLKPEHPTEQALAIELLQLQDVIVFINKDLSSNRLCSY 763

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
            LY IS     F   C  +  + +         RLLL +AT KVMK CF +L I
Sbjct: 764  LYTISEKVQTFVTACRVLGSEEQ-------NSRLLLCDATLKVMKTCFSLLGI 809



 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 82/143 (57%), Gaps = 11/143 (7%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK-GE 68
           ++ + +  +F  A++ A+P L      V  TN K   KFGD+QCN AM++    K     
Sbjct: 232 NILEVVESLFDAAIKAAYPGLDVPPVEVTRTNVKNA-KFGDYQCNSAMSIFTALKGTPNA 290

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            ++P D+A +I       +A  P   +V+D++  A  GF+N FL++ +   ++++++ NG
Sbjct: 291 ARSPRDVANTI-------IAAMPE-TRVLDRLTVAGAGFINAFLTKEFVAARLQNVLANG 342

Query: 129 VQPPTLNKKLRVLVDFSSPNIAR 151
           VQP    KK  ++VDFSSPNIA+
Sbjct: 343 VQPAP-QKKQTIVVDFSSPNIAK 364


>gi|225445067|ref|XP_002280299.1| PREDICTED: arginyl-tRNA synthetase-like [Vitis vinifera]
          Length = 649

 Score =  325 bits (834), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 169/360 (46%), Positives = 235/360 (65%), Gaps = 15/360 (4%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           +V+  LS +F  ++++  P   D    +A+       KFGD+QCN+AM L    K+K  K
Sbjct: 69  TVKKQLSKLFEQSLRITVPSESDVEPLIAAC----APKFGDYQCNNAMGLWSRIKNK--K 122

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
            N F    +I  V+   L       ++I+K  +A PGFVN+ LS  +  + I+ +++ G+
Sbjct: 123 DNGFKGPPTIGKVIMENLPP----TEMIEKCTLAGPGFVNIKLSTSWIAKNIQKMLIIGI 178

Query: 326 Q--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
           +   P L  K R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+LE+   DV+R NHVGDW
Sbjct: 179 ETWAPRLPIK-RAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSNVDVLRRNHVGDW 237

Query: 384 GTQFGMLIAHLQDKFPDYLTKSP-PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           GTQFGMLI  L DKFP++   S   I DLQ FYK SKKRFDED  FK RA Q VV LQ  
Sbjct: 238 GTQFGMLIEFLFDKFPNWEHASAQAIGDLQEFYKASKKRFDEDPAFKGRAQQAVVRLQGG 297

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           +  Y++AW  IC++SR +F K+Y RL V L E+GESFY  ++  ++  L  +GL+E   G
Sbjct: 298 ETSYRRAWAQICEISRNEFNKVYQRLGVQLEEKGESFYNPYIPGVIEQLSNQGLVEESQG 357

Query: 503 RKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
            +++  E   +IP+ +VKSDGG+ Y ++D+AA+  R+ EEKA+WI+YVTD+GQ  HF ++
Sbjct: 358 ARVIHIEGV-NIPLIVVKSDGGYNYASTDMAALWYRLNEEKAEWIIYVTDVGQQQHFEMV 416



 Score =  290 bits (742), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/340 (46%), Positives = 203/340 (59%), Gaps = 45/340 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAF 623
           STIIGDT++R+LE+   DV+R NHVGDWGTQFGMLI  L DKFP++   S   I DLQ F
Sbjct: 210 STIIGDTLARMLEFSNVDVLRRNHVGDWGTQFGMLIEFLFDKFPNWEHASAQAIGDLQEF 269

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SKKRFDED  FK RA Q VV LQ  +  Y++AW  IC++SR +F K+Y RL V L E
Sbjct: 270 YKASKKRFDEDPAFKGRAQQAVVRLQGGETSYRRAWAQICEISRNEFNKVYQRLGVQLEE 329

Query: 684 RGESFYQKHMEQLVPYLEKKG----------------NLSLT------------------ 709
           +GESFY  ++  ++  L  +G                N+ L                   
Sbjct: 330 KGESFYNPYIPGVIEQLSNQGLVEESQGARVIHIEGVNIPLIVVKSDGGYNYASTDMAAL 389

Query: 710 -------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKT---RMDFVGFGVVLGEDR 759
                  K   I+YVTD+GQ  HF ++   AK AG L  N     +   VGFG+VLGED 
Sbjct: 390 WYRLNEEKAEWIIYVTDVGQQQHFEMVFSAAKLAGWLPANDNMYPKASHVGFGLVLGEDG 449

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TR+ + V+L +LLDE   RS   L ++ +  E T  EL    +AV YG +KYADL 
Sbjct: 450 KRFRTRNTEVVRLVDLLDEAKNRSKSVLIERGKAAEWTEQELEHTAEAVGYGAVKYADLK 509

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           +NR  +Y F+FD+ML+D+GNTAVYLLYA+ RI SI R +G
Sbjct: 510 NNRLTNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRKSG 549



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 119/188 (63%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E T  EL    +AV YG +KYADL +NR  +Y F+FD+ML+D+GNTA
Sbjct: 472  RSKSVLIERGKAAEWTEQELEHTAEAVGYGAVKYADLKNNRLTNYTFNFDQMLNDKGNTA 531

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G + ++L+   ++  ++L+H+ E  L   LL+ ++V+     +
Sbjct: 532  VYLLYAHARICSIIRKSGKDIDELK---KTGVLTLDHDDERGLGLHLLQFSEVVEEACTN 588

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LCEYLY++S  F++FY NC  +    E       T RLLL EATA VM+KCF +L
Sbjct: 589  LLPNVLCEYLYNLSENFTKFYSNCQVVGSAEE-------TSRLLLCEATAVVMRKCFHLL 641

Query: 1112 NIRTVHKM 1119
             I  V+K+
Sbjct: 642  GITPVYKI 649



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 13/145 (8%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           +V+  LS +F  ++++  P   D    +A+       KFGD+QCN+AM L    K+K  K
Sbjct: 69  TVKKQLSKLFEQSLRITVPSESDVEPLIAAC----APKFGDYQCNNAMGLWSRIKNK--K 122

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
            N F    +I  V+   L       ++I+K   A PGFVN+ LS  +  + ++ +++ G+
Sbjct: 123 DNGFKGPPTIGKVIMENLPP----TEMIEKCTLAGPGFVNIKLSTSWIAKNIQKMLIIGI 178

Query: 130 Q--PPTLNKKLRVLVDFSSPNIARK 152
           +   P L  K R +VDFSSPNIA++
Sbjct: 179 ETWAPRLPIK-RAVVDFSSPNIAKE 202


>gi|297838167|ref|XP_002886965.1| hypothetical protein ARALYDRAFT_894178 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332806|gb|EFH63224.1| hypothetical protein ARALYDRAFT_894178 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 623

 Score =  325 bits (834), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 179/395 (45%), Positives = 252/395 (63%), Gaps = 32/395 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
           KFGD+QCN+AM L  I K KG + K P  + Q+        L  N   +++++   +A P
Sbjct: 80  KFGDYQCNNAMGLWSIIKGKGTQFKGPPAVGQA--------LIKNLPSSEMVESCSIAGP 131

Query: 302 GFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           GFVNV LS  +  + I++++++G+    PTL+ K R +VDFSSPNIAKEMHVGHLRSTII
Sbjct: 132 GFVNVVLSAKWIAKSIENMLIDGIDTWAPTLSVK-RAVVDFSSPNIAKEMHVGHLRSTII 190

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKES 418
           GDT++R+LEY   +V+R NHVGDWGTQFGMLI  L +KFPD        I DLQ FYK+S
Sbjct: 191 GDTLARMLEYSKVEVLRRNHVGDWGTQFGMLIEFLFEKFPDTDSVTETAIGDLQMFYKKS 250

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES 478
           K RFD D  FK++A Q VV LQ  DP Y+KAW  IC++SR +F K+Y RL V L E+GES
Sbjct: 251 KLRFDLDPEFKEKAQQAVVRLQGGDPVYRKAWAKICEISRNEFAKVYQRLRVELEEKGES 310

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQR 538
           FY  ++  ++  L  KGL+E ++G ++++ E   +IP+ +VKS+GGF Y ++DL A+  R
Sbjct: 311 FYNPYIANVIEELSSKGLVEENEGARVIFVEGF-NIPLMVVKSNGGFNYASTDLTALWYR 369

Query: 539 IEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHD---VVRLNHVGDWGTQ 595
           + EEKA+WI+Y+TDLGQ  HF +  ++       +R   +L  D     R+NHVG     
Sbjct: 370 LNEEKAEWIIYLTDLGQQQHFHMFFKA-------ARKAGWLPDDDKTYPRVNHVG----- 417

Query: 596 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           FG+++     +F    T++  +  L     E+K R
Sbjct: 418 FGLVLGADNKRFR---TRANEVVRLVDLLDEAKDR 449



 Score =  269 bits (688), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 155/340 (45%), Positives = 203/340 (59%), Gaps = 48/340 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKS-PPIADLQAF 623
           STIIGDT++R+LEY   +V+R NHVGDWGTQFGMLI  L +KFPD  + +   I DLQ F
Sbjct: 187 STIIGDTLARMLEYSKVEVLRRNHVGDWGTQFGMLIEFLFEKFPDTDSVTETAIGDLQMF 246

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK+SK RFD D  FK++A Q VV LQ  DP Y+KAW  IC++SR +F K+Y RL V L E
Sbjct: 247 YKKSKLRFDLDPEFKEKAQQAVVRLQGGDPVYRKAWAKICEISRNEFAKVYQRLRVELEE 306

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++  ++  L  KG                                       
Sbjct: 307 KGESFYNPYIANVIEELSSKGLVEENEGARVIFVEGFNIPLMVVKSNGGFNYASTDLTAL 366

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKT--RMDFVGFGVVLGEDR 759
              L+  K   I+Y+TDLGQ  HF +  + A+KAG L + +KT  R++ VGFG+VLG D 
Sbjct: 367 WYRLNEEKAEWIIYLTDLGQQQHFHMFFKAARKAGWLPDDDKTYPRVNHVGFGLVLGADN 426

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TR+ + V+L +LLDE   RS   L ++    E TP EL +  +AV      YADL 
Sbjct: 427 KRFRTRANEVVRLVDLLDEAKDRSKAALIERGMDKEWTPEELDQTAEAVD---TVYADLK 483

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
            NR   Y FSFD+ML+D+G+TAVYLLYA+ RI SI R +G
Sbjct: 484 TNRLTGYTFSFDQMLNDKGDTAVYLLYAHARICSIIRKSG 523



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 116/201 (57%), Gaps = 21/201 (10%)

Query: 919  EEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVF 978
            +E +D  +   + R +DK        E TP EL +  +AV      YADL  NR   Y F
Sbjct: 444  DEAKDRSKAALIERGMDK--------EWTPEELDQTAEAVD---TVYADLKTNRLTGYTF 492

Query: 979  SFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTL 1038
            SFD+ML+D+G+TAVYLLYA+ RI SI R +G + ++L+   ++  ++L+H  E AL   L
Sbjct: 493  SFDQMLNDKGDTAVYLLYAHARICSIIRKSGKDIDELK---KTGKIALDHAAERALGLHL 549

Query: 1039 LRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAE 1098
            L+  + +      L  + LC+YLY +S  F++FY NC  +   AE       T RLLL E
Sbjct: 550  LQFAETVEEACTTLLPNVLCKYLYYLSEEFTKFYSNCQ-VNGSAE------ETSRLLLCE 602

Query: 1099 ATAKVMKKCFDILNIRTVHKM 1119
            ATA VM+KCF +L I  V+K+
Sbjct: 603  ATAIVMRKCFYLLGITPVYKL 623



 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 12/109 (11%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
           KFGD+QCN+AM L  I K KG + K P  + Q+        L  N   +++++    A P
Sbjct: 80  KFGDYQCNNAMGLWSIIKGKGTQFKGPPAVGQA--------LIKNLPSSEMVESCSIAGP 131

Query: 106 GFVNVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           GFVNV LS  +  + +++++++G+    PTL+ K R +VDFSSPNIA++
Sbjct: 132 GFVNVVLSAKWIAKSIENMLIDGIDTWAPTLSVK-RAVVDFSSPNIAKE 179


>gi|449435790|ref|XP_004135677.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cucumis
           sativus]
 gi|449489808|ref|XP_004158422.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cucumis
           sativus]
          Length = 590

 Score =  325 bits (833), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 168/362 (46%), Positives = 243/362 (67%), Gaps = 20/362 (5%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           +++  L+ +F  +++   P+  D    VA+       KFGD+QCN+AM L    K KG +
Sbjct: 10  NIKRQLAKIFDVSLRATVPDETDVEPLVAAC----AGKFGDYQCNNAMGLWSKIKGKGTQ 65

Query: 266 -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            + P  + Q+I          N   +++I+   VA PGFVNV +S+ +  + I++++++G
Sbjct: 66  FRGPPSVGQTIMK--------NLPPSEIIESSSVAGPGFVNVVISKNWIAKTIQNMLIDG 117

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           +    P L  K R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+LE+   DV+R NHVGD
Sbjct: 118 IDTWSPRLPFK-RAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSNVDVLRRNHVGD 176

Query: 383 WGTQFGMLIAHLQDKFPDY--LTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           WGTQFGMLI  L +KFP++  +T++  I DLQ FYK SK+RFD D  FK++A Q VV LQ
Sbjct: 177 WGTQFGMLIEFLFEKFPNWEEVTET-AIGDLQTFYKASKQRFDSDPAFKEKAQQAVVLLQ 235

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
             +P Y+KAW  IC++SR +F ++Y+RL V L E+GESFY  ++  ++  L  KGL+E  
Sbjct: 236 GGEPKYRKAWAQICEISRNEFNRVYERLGVQLEEKGESFYNPYIPNVIKELTDKGLVEES 295

Query: 501 DGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
            G ++++  D  +IP+ +VKSDGGF Y ++DLAAI  R+ EEKA+WI+YVTD+GQ  HF 
Sbjct: 296 QGARVIF-IDGINIPLIVVKSDGGFNYASTDLAAIWYRLNEEKAEWIIYVTDVGQQQHFD 354

Query: 561 LL 562
           ++
Sbjct: 355 MV 356



 Score =  289 bits (739), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 168/394 (42%), Positives = 229/394 (58%), Gaps = 58/394 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY--LTKSPPIADLQA 622
           STIIGDT++R+LE+   DV+R NHVGDWGTQFGMLI  L +KFP++  +T++  I DLQ 
Sbjct: 150 STIIGDTLARMLEFSNVDVLRRNHVGDWGTQFGMLIEFLFEKFPNWEEVTETA-IGDLQT 208

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK SK+RFD D  FK++A Q VV LQ  +P Y+KAW  IC++SR +F ++Y+RL V L 
Sbjct: 209 FYKASKQRFDSDPAFKEKAQQAVVLLQGGEPKYRKAWAQICEISRNEFNRVYERLGVQLE 268

Query: 683 ERGESFYQKHMEQLVPYLEKKG-------------------------------------- 704
           E+GESFY  ++  ++  L  KG                                      
Sbjct: 269 EKGESFYNPYIPNVIKELTDKGLVEESQGARVIFIDGINIPLIVVKSDGGFNYASTDLAA 328

Query: 705 ---NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGI--LNPNK-TRMDFVGFGVVLGED 758
               L+  K   I+YVTD+GQ  HF ++    K+AG   L  NK  +   VGFG+VLGED
Sbjct: 329 IWYRLNEEKAEWIIYVTDVGQQQHFDMVFRAGKRAGWLPLEDNKYPKTTHVGFGLVLGED 388

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADL 818
            K+F+TR+ + V+L +LLDE   RS   L ++ +  E T  EL +  +AV YG +KYADL
Sbjct: 389 GKRFRTRNTEVVRLVDLLDEAKNRSKAALIEREKAAEWTEAELEQIAEAVGYGAVKYADL 448

Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSEVED- 877
            +NR  +Y F+FD+ML+D+GNTAVYLLYA+ RI SI R +G N E+  +      E ED 
Sbjct: 449 KNNRLTNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRKSGKNIEELKKTGTIVLEHEDE 508

Query: 878 RCCPSHAKTHRKPPFTYTELIEQA---LKENGLC 908
           R    H          + E++E+A   L  N LC
Sbjct: 509 RVLGLHL-------LQFAEVVEEACTNLLPNVLC 535



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 117/189 (61%), Gaps = 11/189 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E T  EL +  +AV YG +KYADL +NR  +Y F+FD+ML+D+GNTA
Sbjct: 412  RSKAALIEREKAAEWTEAELEQIAEAVGYGAVKYADLKNNRLTNYTFNFDQMLNDKGNTA 471

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G N E+L+   ++  + LEHE E  L   LL+  +V+     +
Sbjct: 472  VYLLYAHARICSIIRKSGKNIEELK---KTGTIVLEHEDERVLGLHLLQFAEVVEEACTN 528

Query: 1052 LCLHHLCEYLYDISTAFS-EFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
            L  + LCEYLY++S  F+ +FY NC  +    E       T RLLL EAT  VM+KCF +
Sbjct: 529  LLPNVLCEYLYNLSEIFTKKFYSNCQVVGSAQE-------TSRLLLCEATGTVMRKCFHL 581

Query: 1111 LNIRTVHKM 1119
            L I  V+K+
Sbjct: 582  LGIVPVYKI 590



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 16/146 (10%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           +++  L+ +F  +++   P+  D    VA+       KFGD+QCN+AM L    K KG +
Sbjct: 10  NIKRQLAKIFDVSLRATVPDETDVEPLVAAC----AGKFGDYQCNNAMGLWSKIKGKGTQ 65

Query: 70  -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            + P  + Q+I          N   +++I+    A PGFVNV +S+ +  + +++++++G
Sbjct: 66  FRGPPSVGQTIMK--------NLPPSEIIESSSVAGPGFVNVVISKNWIAKTIQNMLIDG 117

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           +    P L  K R +VDFSSPNIA++
Sbjct: 118 IDTWSPRLPFK-RAVVDFSSPNIAKE 142


>gi|282889548|ref|ZP_06298090.1| hypothetical protein pah_c001o023 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|338176601|ref|YP_004653411.1| arginyl-tRNA synthetase [Parachlamydia acanthamoebae UV-7]
 gi|281500561|gb|EFB42838.1| hypothetical protein pah_c001o023 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|336480959|emb|CCB87557.1| Arginyl-tRNA synthetase [Parachlamydia acanthamoebae UV-7]
          Length = 586

 Score =  323 bits (828), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 179/407 (43%), Positives = 252/407 (61%), Gaps = 33/407 (8%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           LS  F  A+  AFPE    T      ++    +FG +QCN AM L K+   K     P D
Sbjct: 8   LSQKFQTAILSAFPEWDPNTPLPLEISQSTQAQFGHYQCNSAMKLAKVLGAK-----PRD 62

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG---VQP 327
           IA  I   V      N    ++I+K+E+A PGF+N+ L   Y  +++  I+++    ++ 
Sbjct: 63  IATRIIEHVD----VNLEGIRLIEKMEIAGPGFINITLDPAYLSQKLHRILLDSHLDIEL 118

Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
           P    K +++V+FSSPN AKE+HVGHLRSTIIGD+++RL E+LGHDV+RLNH+GDWGT F
Sbjct: 119 P--QHKQKIIVEFSSPNTAKELHVGHLRSTIIGDSLARLFEFLGHDVLRLNHIGDWGTAF 176

Query: 388 GMLIAHLQDKFPDYL--TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445
           GMLIA+++ K P  L  T+   +  L  +YK+SK+RFD D  FKK +   VVALQ  DP 
Sbjct: 177 GMLIAYMKQKTPHVLDGTEKTDLQHLVQWYKKSKERFDSDADFKKTSQLEVVALQGGDPA 236

Query: 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
             KAWE+ICD+SR+ +Q+IYD L+V + ERGES+Y   +   V  LE KGL+ L DG K 
Sbjct: 237 ALKAWEIICDISRKAYQEIYDLLDVKIIERGESYYNPMLADTVADLEAKGLVTLSDGAKC 296

Query: 506 MWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           ++ E     +  S+P+ + KSDGG+ YDT+D+AAIRQR  EEKAD I+YVTD GQ +HF+
Sbjct: 297 IFLEGFQNREGASLPLMVQKSDGGYNYDTTDMAAIRQRTLEEKADRIIYVTDAGQSLHFQ 356

Query: 561 LLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           ++ ++       +    YL    VR++HV      FG+++     KF
Sbjct: 357 MIFQA-------AEKAHYLDASKVRVDHV-----PFGLVLGSDGKKF 391



 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/341 (41%), Positives = 201/341 (58%), Gaps = 51/341 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL--TKSPPIADLQA 622
           STIIGD+++RL E+LGHDV+RLNH+GDWGT FGMLIA+++ K P  L  T+   +  L  
Sbjct: 145 STIIGDSLARLFEFLGHDVLRLNHIGDWGTAFGMLIAYMKQKTPHVLDGTEKTDLQHLVQ 204

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           +YK+SK+RFD D  FKK +   VVALQ  DP   KAWE+ICD+SR+ +Q+IYD L+V + 
Sbjct: 205 WYKKSKERFDSDADFKKTSQLEVVALQGGDPAALKAWEIICDISRKAYQEIYDLLDVKII 264

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSLT--------------------------------- 709
           ERGES+Y   +   V  LE KG ++L+                                 
Sbjct: 265 ERGESYYNPMLADTVADLEAKGLVTLSDGAKCIFLEGFQNREGASLPLMVQKSDGGYNYD 324

Query: 710 --------------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                         K   I+YVTD GQ +HF+++ + A+KA  L+ +K R+D V FG+VL
Sbjct: 325 TTDMAAIRQRTLEEKADRIIYVTDAGQSLHFQMIFQAAEKAHYLDASKVRVDHVPFGLVL 384

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           G D KKF+TRSG+T +L +LL   ++ +   L +  R  E+   E  +  + +    +KY
Sbjct: 385 GSDGKKFRTRSGETERLIDLLLAAVKHADQLLIE--RSPEMPKEEREKLAKTLGIAAVKY 442

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           ADL+ NR  DY FS+++ML   GNTA +L+YAY R+A I R
Sbjct: 443 ADLACNRTGDYTFSYERMLRFEGNTAAFLMYAYVRVAGIKR 483



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 95/178 (53%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R  E+   E  +  + +    +KYADL+ NR  DY FS+++ML   GNTA +L+YAY R+
Sbjct: 419  RSPEMPKEEREKLAKTLGIAAVKYADLACNRTGDYTFSYERMLRFEGNTAAFLMYAYVRV 478

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            A I R   IN   L++     P+ LEH  E +LA  L +  + L  V  DL  + L EYL
Sbjct: 479  AGIKRK--INPA-LKIEELKDPIVLEHPSEISLAVHLAQFEEALEQVASDLLPNRLTEYL 535

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y ++  F+ F+ +C       EG  +     RL + E  AK MK+   IL ++TV +M
Sbjct: 536  YGLAEKFNAFFRDCRV-----EGSPQ--QNSRLQICEIVAKTMKQGLSILGVQTVERM 586



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 14/141 (9%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           LS  F  A+  AFPE    T      ++    +FG +QCN AM L K+   K     P D
Sbjct: 8   LSQKFQTAILSAFPEWDPNTPLPLEISQSTQAQFGHYQCNSAMKLAKVLGAK-----PRD 62

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG---VQP 131
           IA  I   V      N    ++I+K+E A PGF+N+ L   Y  +++  I+++    ++ 
Sbjct: 63  IATRIIEHVD----VNLEGIRLIEKMEIAGPGFINITLDPAYLSQKLHRILLDSHLDIEL 118

Query: 132 PTLNKKLRVLVDFSSPNIARK 152
           P    K +++V+FSSPN A++
Sbjct: 119 P--QHKQKIIVEFSSPNTAKE 137


>gi|297841275|ref|XP_002888519.1| hypothetical protein ARALYDRAFT_475759 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334360|gb|EFH64778.1| hypothetical protein ARALYDRAFT_475759 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 590

 Score =  323 bits (828), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 178/395 (45%), Positives = 251/395 (63%), Gaps = 32/395 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
           KFGD+QCN+AM L    K KG + + P  + Q+        L  N   +++++   +A P
Sbjct: 44  KFGDYQCNNAMGLWSFIKGKGTQFRGPPAVGQA--------LIKNLPSSEMVESCSIAGP 95

Query: 302 GFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           GFVNV LS  +  + I++++V+G+    PTL+ K R +VDFSSPNIAKEMHVGHLRSTII
Sbjct: 96  GFVNVVLSAKWIAKSIENMLVDGIDTWAPTLSVK-RAVVDFSSPNIAKEMHVGHLRSTII 154

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKES 418
           GDT++R+LEY   +V+R NHVGDWGTQFGMLI  L +KFPD        I DLQ FYK+S
Sbjct: 155 GDTLARMLEYSKVEVLRRNHVGDWGTQFGMLIEFLFEKFPDTDSVTETAIGDLQMFYKKS 214

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES 478
           K RFD D  FK++A Q VV LQ  DP Y+KAW  IC++SR +F K+Y RL V L E+GES
Sbjct: 215 KLRFDLDPEFKEKAQQAVVRLQGGDPVYRKAWAKICEISRNEFAKVYQRLRVELEEKGES 274

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQR 538
           FY  ++  ++  L  KGL+E ++G ++++ E   +IP+ +VKS+GGF Y ++DL A+  R
Sbjct: 275 FYNPYIANVIEELSSKGLVEENEGARVIFVEGF-NIPLMVVKSNGGFNYASTDLTALWYR 333

Query: 539 IEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHD---VVRLNHVGDWGTQ 595
           + EEKA+WI+Y+TDLGQ  HF +  ++       +R   +L  D     R+NHVG     
Sbjct: 334 LNEEKAEWIIYLTDLGQQQHFHMFFKA-------ARKAGWLPDDDKTYPRVNHVG----- 381

Query: 596 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           FG+++     +F    T++  +  L     E+K R
Sbjct: 382 FGLVLGADNKRFR---TRANEVVRLVDLLDEAKDR 413



 Score =  284 bits (727), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/340 (46%), Positives = 206/340 (60%), Gaps = 45/340 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAF 623
           STIIGDT++R+LEY   +V+R NHVGDWGTQFGMLI  L +KFPD        I DLQ F
Sbjct: 151 STIIGDTLARMLEYSKVEVLRRNHVGDWGTQFGMLIEFLFEKFPDTDSVTETAIGDLQMF 210

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK+SK RFD D  FK++A Q VV LQ  DP Y+KAW  IC++SR +F K+Y RL V L E
Sbjct: 211 YKKSKLRFDLDPEFKEKAQQAVVRLQGGDPVYRKAWAKICEISRNEFAKVYQRLRVELEE 270

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++  ++  L  KG                                       
Sbjct: 271 KGESFYNPYIANVIEELSSKGLVEENEGARVIFVEGFNIPLMVVKSNGGFNYASTDLTAL 330

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKT--RMDFVGFGVVLGEDR 759
              L+  K   I+Y+TDLGQ  HF +  + A+KAG L + +KT  R++ VGFG+VLG D 
Sbjct: 331 WYRLNEEKAEWIIYLTDLGQQQHFHMFFKAARKAGWLPDDDKTYPRVNHVGFGLVLGADN 390

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TR+ + V+L +LLDE   RS   L ++ +  E TP EL +  +AV YG +K+ADL 
Sbjct: 391 KRFRTRANEVVRLVDLLDEAKDRSKAALIERGKDKEWTPEELDQTAEAVGYGALKFADLK 450

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
            NR   Y FSFD+ML+D+G+TAVYLLYA+ RI SI R +G
Sbjct: 451 TNRLTGYTFSFDQMLNDKGDTAVYLLYAHARICSIIRKSG 490



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 116/188 (61%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E TP EL +  +AV YG +K+ADL  NR   Y FSFD+ML+D+G+TA
Sbjct: 413  RSKAALIERGKDKEWTPEELDQTAEAVGYGALKFADLKTNRLTGYTFSFDQMLNDKGDTA 472

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G + ++L+   ++  ++L+H  E AL   LL+  + +      
Sbjct: 473  VYLLYAHARICSIIRKSGKDIDELK---RTGKIALDHAAERALGLHLLQFAETVEEACTT 529

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LC+YLY +S  F++FY NC  +   AE       T RLLL EATA VM+KCF +L
Sbjct: 530  LLPNVLCKYLYYLSEEFTKFYSNCQ-VNGSAE------ETSRLLLCEATAIVMRKCFYLL 582

Query: 1112 NIRTVHKM 1119
             I  V+K+
Sbjct: 583  GITPVYKL 590



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 12/109 (11%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
           KFGD+QCN+AM L    K KG + + P  + Q+        L  N   +++++    A P
Sbjct: 44  KFGDYQCNNAMGLWSFIKGKGTQFRGPPAVGQA--------LIKNLPSSEMVESCSIAGP 95

Query: 106 GFVNVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           GFVNV LS  +  + +++++V+G+    PTL+ K R +VDFSSPNIA++
Sbjct: 96  GFVNVVLSAKWIAKSIENMLVDGIDTWAPTLSVK-RAVVDFSSPNIAKE 143


>gi|297831814|ref|XP_002883789.1| hypothetical protein ARALYDRAFT_480296 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329629|gb|EFH60048.1| hypothetical protein ARALYDRAFT_480296 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 590

 Score =  323 bits (828), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 181/396 (45%), Positives = 250/396 (63%), Gaps = 34/396 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQS-IASVVTSELATNPSLAKVIDKIEVAK 300
           KFGD+QCN+AM L  I K KG + K P  + Q+ I S+ TSE+         ++   +A 
Sbjct: 44  KFGDYQCNNAMGLWSIIKGKGTQFKGPPAVGQALIKSLPTSEM---------VESCSIAG 94

Query: 301 PGFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           PGFVNV LS  +  + I++++++G+    PTL+ K R +VDFSSPNIAKEMHVGHLRSTI
Sbjct: 95  PGFVNVVLSAKWMAKSIENMLIDGIDTWAPTLSVK-RAVVDFSSPNIAKEMHVGHLRSTI 153

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKE 417
           IGDT++R+LEY   +V+R NHVGDWGTQFGMLI  L +KFPD        I DLQ FYK+
Sbjct: 154 IGDTLARMLEYSKVEVLRRNHVGDWGTQFGMLIEFLFEKFPDTDSVTETAIGDLQMFYKK 213

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           SK +FD D  FK++A Q VV LQ  DP Y+KAW  IC++SR +F K+Y RL V L E+GE
Sbjct: 214 SKLKFDLDPEFKEKAQQAVVRLQGGDPVYRKAWAKICEISRNEFAKVYQRLRVELEEKGE 273

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQ 537
           SFY  ++  ++  L  KGL+E   G ++++ E   + P+ +VKSDGGF Y ++DL A+  
Sbjct: 274 SFYNPYIANVIEELSSKGLVEESKGARVIFIEGFKA-PLIVVKSDGGFNYASTDLTALWY 332

Query: 538 RIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHD---VVRLNHVGDWGT 594
           R+ EEKA+WI+Y+TD GQ  HF +  ++       +R   +L  D     R+NHVG    
Sbjct: 333 RLNEEKAEWIIYLTDFGQQQHFHMFFKA-------ARKAGWLPDDDKTYPRVNHVG---- 381

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            FG+++     +F    T+S  +  L     E+K R
Sbjct: 382 -FGLVLGDDNKRFR---TRSTEVVRLVDLLDEAKDR 413



 Score =  283 bits (723), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 156/340 (45%), Positives = 206/340 (60%), Gaps = 45/340 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAF 623
           STIIGDT++R+LEY   +V+R NHVGDWGTQFGMLI  L +KFPD        I DLQ F
Sbjct: 151 STIIGDTLARMLEYSKVEVLRRNHVGDWGTQFGMLIEFLFEKFPDTDSVTETAIGDLQMF 210

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK+SK +FD D  FK++A Q VV LQ  DP Y+KAW  IC++SR +F K+Y RL V L E
Sbjct: 211 YKKSKLKFDLDPEFKEKAQQAVVRLQGGDPVYRKAWAKICEISRNEFAKVYQRLRVELEE 270

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++  ++  L  KG                                       
Sbjct: 271 KGESFYNPYIANVIEELSSKGLVEESKGARVIFIEGFKAPLIVVKSDGGFNYASTDLTAL 330

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKT--RMDFVGFGVVLGEDR 759
              L+  K   I+Y+TD GQ  HF +  + A+KAG L + +KT  R++ VGFG+VLG+D 
Sbjct: 331 WYRLNEEKAEWIIYLTDFGQQQHFHMFFKAARKAGWLPDDDKTYPRVNHVGFGLVLGDDN 390

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TRS + V+L +LLDE   RS   L ++ +  E TP EL +  ++V YG +KYADL 
Sbjct: 391 KRFRTRSTEVVRLVDLLDEAKDRSKAALIERGKDKEWTPEELDQTAESVGYGALKYADLK 450

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
            NR   Y FSFD+ML+D+G+TAVYLLYA+ RI SI R +G
Sbjct: 451 TNRLTGYTFSFDQMLNDKGDTAVYLLYAHARICSIIRKSG 490



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E TP EL +  ++V YG +KYADL  NR   Y FSFD+ML+D+G+TA
Sbjct: 413  RSKAALIERGKDKEWTPEELDQTAESVGYGALKYADLKTNRLTGYTFSFDQMLNDKGDTA 472

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G + ++L+   ++  ++L+H  E AL   LL+  + +      
Sbjct: 473  VYLLYAHARICSIIRKSGKDIDELK---KTGKIALDHAAERALGLHLLQFAETVEEACTT 529

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LC+YLY +S  F++FY +C  +   AE       T RLLL EATA VM+KCF +L
Sbjct: 530  LLPNVLCKYLYYLSEEFTKFYSSCQ-VNGSAE------ETSRLLLCEATAIVMRKCFHLL 582

Query: 1112 NIRTVHKM 1119
             I  V+K+
Sbjct: 583  GITPVYKL 590



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 14/110 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQS-IASVVTSELATNPSLAKVIDKIEAAK 104
           KFGD+QCN+AM L  I K KG + K P  + Q+ I S+ TSE+  + S+         A 
Sbjct: 44  KFGDYQCNNAMGLWSIIKGKGTQFKGPPAVGQALIKSLPTSEMVESCSI---------AG 94

Query: 105 PGFVNVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           PGFVNV LS  +  + +++++++G+    PTL+ K R +VDFSSPNIA++
Sbjct: 95  PGFVNVVLSAKWMAKSIENMLIDGIDTWAPTLSVK-RAVVDFSSPNIAKE 143


>gi|115462265|ref|NP_001054732.1| Os05g0163000 [Oryza sativa Japonica Group]
 gi|46981337|gb|AAT07655.1| putative Arginyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|113578283|dbj|BAF16646.1| Os05g0163000 [Oryza sativa Japonica Group]
 gi|222630303|gb|EEE62435.1| hypothetical protein OsJ_17227 [Oryza sativa Japonica Group]
          Length = 606

 Score =  323 bits (827), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 184/429 (42%), Positives = 254/429 (59%), Gaps = 30/429 (6%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           SV+  LS +   +++   PE+      V    E    KFGD+QCN+AM L    K  G  
Sbjct: 23  SVKQQLSKLVIASLRTTVPEV-----EVDPMVEVCTAKFGDYQCNNAMGLWSRIKGSGTS 77

Query: 266 -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            KNP  I Q+IA         N   + +I+   VA PGFVN+ LS  +  ++I+D++VNG
Sbjct: 78  FKNPNAIGQAIAK--------NLPPSDIIESTSVAGPGFVNIVLSNSWVAKRIQDMLVNG 129

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           ++   P L  K R ++DFSSPNIAKEMHVGHLRSTIIGDT++R+ E+   +V+R NHVGD
Sbjct: 130 IKTWAPILPVK-RAVLDFSSPNIAKEMHVGHLRSTIIGDTLARMFEFSNVEVLRRNHVGD 188

Query: 383 WGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           WGTQFGMLI +L +KFP++    S  I DLQ FYK SK RFD D  FK RA Q VV LQ 
Sbjct: 189 WGTQFGMLIQYLFEKFPNWEEIGSQAIGDLQTFYKASKNRFDGDAEFKDRAQQAVVRLQG 248

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            +  Y+ AW  IC++SR +F  +Y  LNV L E+GESFY   + Q++  L  KGL++  +
Sbjct: 249 GEERYRAAWNKICEISRNEFDMVYKLLNVKLEEKGESFYNPFIPQVLEELNNKGLIKESE 308

Query: 502 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           G K+++ E    IP+ +VK DGGF Y ++DLAA+  R+  EKA+WI+YVTD+GQ  HF +
Sbjct: 309 GAKVIFIEGH-QIPLIVVKRDGGFNYASTDLAALWYRLNVEKAEWIIYVTDVGQQQHFDM 367

Query: 562 LEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 621
              +  +   +    E       + NHVG     FG+++     +F    T+S  +  L 
Sbjct: 368 FFNAARMAGWLPDPKE---KKYPKTNHVG-----FGLVLGSDGKRFR---TRSTEVVRLI 416

Query: 622 AFYKESKKR 630
               E+K R
Sbjct: 417 ELLDEAKSR 425



 Score =  269 bits (687), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 151/350 (43%), Positives = 200/350 (57%), Gaps = 50/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++R+ E+   +V+R NHVGDWGTQFGMLI +L +KFP++    S  I DLQ F
Sbjct: 162 STIIGDTLARMFEFSNVEVLRRNHVGDWGTQFGMLIQYLFEKFPNWEEIGSQAIGDLQTF 221

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK RFD D  FK RA Q VV LQ  +  Y+ AW  IC++SR +F  +Y  LNV L E
Sbjct: 222 YKASKNRFDGDAEFKDRAQQAVVRLQGGEERYRAAWNKICEISRNEFDMVYKLLNVKLEE 281

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY   + Q++  L  KG                                       
Sbjct: 282 KGESFYNPFIPQVLEELNNKGLIKESEGAKVIFIEGHQIPLIVVKRDGGFNYASTDLAAL 341

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNK----TRMDFVGFGVVLGED 758
              L++ K   I+YVTD+GQ  HF +    A+ AG L   K     + + VGFG+VLG D
Sbjct: 342 WYRLNVEKAEWIIYVTDVGQQQHFDMFFNAARMAGWLPDPKEKKYPKTNHVGFGLVLGSD 401

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            K+F+TRS + V+L ELLDE   RS    L +L +  +  + T  EL +  +AV YG +K
Sbjct: 402 GKRFRTRSTEVVRLIELLDEAKSRSKSELLQRLTENGKIVDWTEEELEKTSEAVGYGAVK 461

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADL +NR  +Y FSF++ML D+GNTAVYL YA+ RI SI R +  + E+
Sbjct: 462 YADLKNNRLTNYTFSFEQMLSDKGNTAVYLQYAHARICSIIRKSNKDVEE 511



 Score =  150 bits (378), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 114/186 (61%), Gaps = 10/186 (5%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            L +L +  +  + T  EL +  +AV YG +KYADL +NR  +Y FSF++ML D+GNTAVY
Sbjct: 431  LQRLTENGKIVDWTEEELEKTSEAVGYGAVKYADLKNNRLTNYTFSFEQMLSDKGNTAVY 490

Query: 994  LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLC 1053
            L YA+ RI SI R +  + E+L++   S  +SL+H  E  L   L+R  +V+     +L 
Sbjct: 491  LQYAHARICSIIRKSNKDVEELKM---SGAISLDHPDERVLGLYLIRFAEVVEEACTNLL 547

Query: 1054 LHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
             + LCEYLY++S  F+ FY NC  +    E       T RLLL +ATA VM++CF++L I
Sbjct: 548  PNVLCEYLYNLSEMFTRFYTNCQVVGSPEE-------TSRLLLCQATAVVMRQCFELLGI 600

Query: 1114 RTVHKM 1119
              V+K+
Sbjct: 601  TPVYKL 606



 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 17/146 (11%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           SV+  LS +   +++   PE+      V    E    KFGD+QCN+AM L    K  G  
Sbjct: 23  SVKQQLSKLVIASLRTTVPEV-----EVDPMVEVCTAKFGDYQCNNAMGLWSRIKGSGTS 77

Query: 70  -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            KNP  I Q+IA         N   + +I+    A PGFVN+ LS  +  ++++D++VNG
Sbjct: 78  FKNPNAIGQAIAK--------NLPPSDIIESTSVAGPGFVNIVLSNSWVAKRIQDMLVNG 129

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           ++   P L  K R ++DFSSPNIA++
Sbjct: 130 IKTWAPILPVK-RAVLDFSSPNIAKE 154


>gi|226509531|ref|NP_001141350.1| uncharacterized protein LOC100273441 [Zea mays]
 gi|194704118|gb|ACF86143.1| unknown [Zea mays]
 gi|413944550|gb|AFW77199.1| arginyl-tRNA synthetase isoform 1 [Zea mays]
 gi|413944551|gb|AFW77200.1| arginyl-tRNA synthetase isoform 2 [Zea mays]
          Length = 604

 Score =  322 bits (826), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 175/392 (44%), Positives = 245/392 (62%), Gaps = 25/392 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
           KF D+QCN+AM L    K  G   KNP  I Q+IA  + S        + +I+   VA P
Sbjct: 53  KFADYQCNNAMGLWSKVKGSGTSFKNPNAIGQAIAKNLPS--------SDIIESTSVAGP 104

Query: 302 GFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           GFVN+ LS  +  ++I+D++VNG++   P L  K R ++DFSSPNIAKEMHVGHLRSTII
Sbjct: 105 GFVNIVLSNRWVAQRIQDMLVNGIKTWAPILPVK-RAVIDFSSPNIAKEMHVGHLRSTII 163

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKES 418
           GDT++R+ E+   DV+R NHVGDWGTQFGMLI +L +KFP++    S  I DLQ FYK S
Sbjct: 164 GDTLARMFEFSNVDVLRRNHVGDWGTQFGMLIEYLFEKFPNWQEIGSQAIGDLQIFYKAS 223

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES 478
           K RFD D  FK RA Q VV LQ  +  Y++AW+ ICD+SR +F  +Y RLNV L E+GES
Sbjct: 224 KHRFDNDPEFKARAQQGVVRLQGGEERYREAWKKICDISRSEFDLVYKRLNVVLEEKGES 283

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQR 538
           FY  ++ Q++  L  KGL++  +G ++++ +    IP+ +VKSDGGF Y ++DLAA+  R
Sbjct: 284 FYNPYIPQVLEELSSKGLIKESEGARVIFIQGH-QIPLIVVKSDGGFNYASTDLAALWYR 342

Query: 539 IEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 598
           +  E+A+WI+YVTD+GQ  HF +   +  +   +    E       + +HVG     FG+
Sbjct: 343 LNVEQAEWIIYVTDVGQQQHFDMFFSAAKMAGWLPGPNE---KKFPKTSHVG-----FGL 394

Query: 599 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           ++     +F    T+S  +  L     E+K R
Sbjct: 395 VLGSDGKRFR---TRSTEVVRLVELLDEAKSR 423



 Score =  280 bits (716), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 156/350 (44%), Positives = 205/350 (58%), Gaps = 50/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++R+ E+   DV+R NHVGDWGTQFGMLI +L +KFP++    S  I DLQ F
Sbjct: 160 STIIGDTLARMFEFSNVDVLRRNHVGDWGTQFGMLIEYLFEKFPNWQEIGSQAIGDLQIF 219

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK RFD D  FK RA Q VV LQ  +  Y++AW+ ICD+SR +F  +Y RLNV L E
Sbjct: 220 YKASKHRFDNDPEFKARAQQGVVRLQGGEERYREAWKKICDISRSEFDLVYKRLNVVLEE 279

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++ Q++  L  KG                                       
Sbjct: 280 KGESFYNPYIPQVLEELSSKGLIKESEGARVIFIQGHQIPLIVVKSDGGFNYASTDLAAL 339

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKTRM---DFVGFGVVLGED 758
              L++ +   I+YVTD+GQ  HF +    AK AG L  PN+ +      VGFG+VLG D
Sbjct: 340 WYRLNVEQAEWIIYVTDVGQQQHFDMFFSAAKMAGWLPGPNEKKFPKTSHVGFGLVLGSD 399

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            K+F+TRS + V+L ELLDE   RS    L +L +  +  + T  EL +  +AV YG +K
Sbjct: 400 GKRFRTRSTEVVRLVELLDEAKSRSKSELLQRLTENGKIVDWTDEELEQTSEAVGYGAVK 459

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADL +NR  +Y FSF++ML D+GNTAVYL YA+ RI SI R +  + ED
Sbjct: 460 YADLKNNRLTNYTFSFEQMLSDKGNTAVYLQYAHARICSIIRKSNKDVED 509



 Score =  150 bits (379), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 114/186 (61%), Gaps = 10/186 (5%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            L +L +  +  + T  EL +  +AV YG +KYADL +NR  +Y FSF++ML D+GNTAVY
Sbjct: 429  LQRLTENGKIVDWTDEELEQTSEAVGYGAVKYADLKNNRLTNYTFSFEQMLSDKGNTAVY 488

Query: 994  LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLC 1053
            L YA+ RI SI R +  + EDL++      +SL+H  E  L   L+R  +V+     +L 
Sbjct: 489  LQYAHARICSIIRKSNKDVEDLKMTG---AISLDHPDERVLGLYLIRFAEVVEEACTNLL 545

Query: 1054 LHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
             + +CEYLY++S  F++FY NC  +    E       T RLLL +ATA VM++CF++L I
Sbjct: 546  PNVVCEYLYNLSEMFTKFYTNCQVVGSPEE-------TSRLLLCQATAVVMRQCFNLLGI 598

Query: 1114 RTVHKM 1119
              V+K+
Sbjct: 599  TPVYKL 604



 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 12/109 (11%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
           KF D+QCN+AM L    K  G   KNP  I Q+IA  + S        + +I+    A P
Sbjct: 53  KFADYQCNNAMGLWSKVKGSGTSFKNPNAIGQAIAKNLPS--------SDIIESTSVAGP 104

Query: 106 GFVNVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           GFVN+ LS  +  ++++D++VNG++   P L  K R ++DFSSPNIA++
Sbjct: 105 GFVNIVLSNRWVAQRIQDMLVNGIKTWAPILPVK-RAVIDFSSPNIAKE 152


>gi|413944552|gb|AFW77201.1| hypothetical protein ZEAMMB73_220224 [Zea mays]
          Length = 653

 Score =  322 bits (825), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 175/392 (44%), Positives = 245/392 (62%), Gaps = 25/392 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
           KF D+QCN+AM L    K  G   KNP  I Q+IA  + S        + +I+   VA P
Sbjct: 102 KFADYQCNNAMGLWSKVKGSGTSFKNPNAIGQAIAKNLPS--------SDIIESTSVAGP 153

Query: 302 GFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           GFVN+ LS  +  ++I+D++VNG++   P L  K R ++DFSSPNIAKEMHVGHLRSTII
Sbjct: 154 GFVNIVLSNRWVAQRIQDMLVNGIKTWAPILPVK-RAVIDFSSPNIAKEMHVGHLRSTII 212

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKES 418
           GDT++R+ E+   DV+R NHVGDWGTQFGMLI +L +KFP++    S  I DLQ FYK S
Sbjct: 213 GDTLARMFEFSNVDVLRRNHVGDWGTQFGMLIEYLFEKFPNWQEIGSQAIGDLQIFYKAS 272

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES 478
           K RFD D  FK RA Q VV LQ  +  Y++AW+ ICD+SR +F  +Y RLNV L E+GES
Sbjct: 273 KHRFDNDPEFKARAQQGVVRLQGGEERYREAWKKICDISRSEFDLVYKRLNVVLEEKGES 332

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQR 538
           FY  ++ Q++  L  KGL++  +G ++++ +    IP+ +VKSDGGF Y ++DLAA+  R
Sbjct: 333 FYNPYIPQVLEELSSKGLIKESEGARVIFIQGH-QIPLIVVKSDGGFNYASTDLAALWYR 391

Query: 539 IEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 598
           +  E+A+WI+YVTD+GQ  HF +   +  +   +    E       + +HVG     FG+
Sbjct: 392 LNVEQAEWIIYVTDVGQQQHFDMFFSAAKMAGWLPGPNE---KKFPKTSHVG-----FGL 443

Query: 599 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           ++     +F    T+S  +  L     E+K R
Sbjct: 444 VLGSDGKRFR---TRSTEVVRLVELLDEAKSR 472



 Score =  279 bits (714), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 156/350 (44%), Positives = 205/350 (58%), Gaps = 50/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++R+ E+   DV+R NHVGDWGTQFGMLI +L +KFP++    S  I DLQ F
Sbjct: 209 STIIGDTLARMFEFSNVDVLRRNHVGDWGTQFGMLIEYLFEKFPNWQEIGSQAIGDLQIF 268

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK RFD D  FK RA Q VV LQ  +  Y++AW+ ICD+SR +F  +Y RLNV L E
Sbjct: 269 YKASKHRFDNDPEFKARAQQGVVRLQGGEERYREAWKKICDISRSEFDLVYKRLNVVLEE 328

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++ Q++  L  KG                                       
Sbjct: 329 KGESFYNPYIPQVLEELSSKGLIKESEGARVIFIQGHQIPLIVVKSDGGFNYASTDLAAL 388

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKTRM---DFVGFGVVLGED 758
              L++ +   I+YVTD+GQ  HF +    AK AG L  PN+ +      VGFG+VLG D
Sbjct: 389 WYRLNVEQAEWIIYVTDVGQQQHFDMFFSAAKMAGWLPGPNEKKFPKTSHVGFGLVLGSD 448

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            K+F+TRS + V+L ELLDE   RS    L +L +  +  + T  EL +  +AV YG +K
Sbjct: 449 GKRFRTRSTEVVRLVELLDEAKSRSKSELLQRLTENGKIVDWTDEELEQTSEAVGYGAVK 508

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADL +NR  +Y FSF++ML D+GNTAVYL YA+ RI SI R +  + ED
Sbjct: 509 YADLKNNRLTNYTFSFEQMLSDKGNTAVYLQYAHARICSIIRKSNKDVED 558



 Score =  149 bits (377), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 114/186 (61%), Gaps = 10/186 (5%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            L +L +  +  + T  EL +  +AV YG +KYADL +NR  +Y FSF++ML D+GNTAVY
Sbjct: 478  LQRLTENGKIVDWTDEELEQTSEAVGYGAVKYADLKNNRLTNYTFSFEQMLSDKGNTAVY 537

Query: 994  LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLC 1053
            L YA+ RI SI R +  + EDL++      +SL+H  E  L   L+R  +V+     +L 
Sbjct: 538  LQYAHARICSIIRKSNKDVEDLKMTG---AISLDHPDERVLGLYLIRFAEVVEEACTNLL 594

Query: 1054 LHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
             + +CEYLY++S  F++FY NC  +    E       T RLLL +ATA VM++CF++L I
Sbjct: 595  PNVVCEYLYNLSEMFTKFYTNCQVVGSPEE-------TSRLLLCQATAVVMRQCFNLLGI 647

Query: 1114 RTVHKM 1119
              V+K+
Sbjct: 648  TPVYKL 653



 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 12/109 (11%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
           KF D+QCN+AM L    K  G   KNP  I Q+IA  + S        + +I+    A P
Sbjct: 102 KFADYQCNNAMGLWSKVKGSGTSFKNPNAIGQAIAKNLPS--------SDIIESTSVAGP 153

Query: 106 GFVNVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           GFVN+ LS  +  ++++D++VNG++   P L  K R ++DFSSPNIA++
Sbjct: 154 GFVNIVLSNRWVAQRIQDMLVNGIKTWAPILPVK-RAVIDFSSPNIAKE 201


>gi|413944553|gb|AFW77202.1| arginyl-tRNA synthetase [Zea mays]
          Length = 654

 Score =  322 bits (825), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 175/392 (44%), Positives = 245/392 (62%), Gaps = 25/392 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
           KF D+QCN+AM L    K  G   KNP  I Q+IA  + S        + +I+   VA P
Sbjct: 103 KFADYQCNNAMGLWSKVKGSGTSFKNPNAIGQAIAKNLPS--------SDIIESTSVAGP 154

Query: 302 GFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           GFVN+ LS  +  ++I+D++VNG++   P L  K R ++DFSSPNIAKEMHVGHLRSTII
Sbjct: 155 GFVNIVLSNRWVAQRIQDMLVNGIKTWAPILPVK-RAVIDFSSPNIAKEMHVGHLRSTII 213

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKES 418
           GDT++R+ E+   DV+R NHVGDWGTQFGMLI +L +KFP++    S  I DLQ FYK S
Sbjct: 214 GDTLARMFEFSNVDVLRRNHVGDWGTQFGMLIEYLFEKFPNWQEIGSQAIGDLQIFYKAS 273

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES 478
           K RFD D  FK RA Q VV LQ  +  Y++AW+ ICD+SR +F  +Y RLNV L E+GES
Sbjct: 274 KHRFDNDPEFKARAQQGVVRLQGGEERYREAWKKICDISRSEFDLVYKRLNVVLEEKGES 333

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQR 538
           FY  ++ Q++  L  KGL++  +G ++++ +    IP+ +VKSDGGF Y ++DLAA+  R
Sbjct: 334 FYNPYIPQVLEELSSKGLIKESEGARVIFIQGH-QIPLIVVKSDGGFNYASTDLAALWYR 392

Query: 539 IEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 598
           +  E+A+WI+YVTD+GQ  HF +   +  +   +    E       + +HVG     FG+
Sbjct: 393 LNVEQAEWIIYVTDVGQQQHFDMFFSAAKMAGWLPGPNE---KKFPKTSHVG-----FGL 444

Query: 599 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           ++     +F    T+S  +  L     E+K R
Sbjct: 445 VLGSDGKRFR---TRSTEVVRLVELLDEAKSR 473



 Score =  279 bits (714), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 156/350 (44%), Positives = 205/350 (58%), Gaps = 50/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++R+ E+   DV+R NHVGDWGTQFGMLI +L +KFP++    S  I DLQ F
Sbjct: 210 STIIGDTLARMFEFSNVDVLRRNHVGDWGTQFGMLIEYLFEKFPNWQEIGSQAIGDLQIF 269

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK RFD D  FK RA Q VV LQ  +  Y++AW+ ICD+SR +F  +Y RLNV L E
Sbjct: 270 YKASKHRFDNDPEFKARAQQGVVRLQGGEERYREAWKKICDISRSEFDLVYKRLNVVLEE 329

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++ Q++  L  KG                                       
Sbjct: 330 KGESFYNPYIPQVLEELSSKGLIKESEGARVIFIQGHQIPLIVVKSDGGFNYASTDLAAL 389

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKTRM---DFVGFGVVLGED 758
              L++ +   I+YVTD+GQ  HF +    AK AG L  PN+ +      VGFG+VLG D
Sbjct: 390 WYRLNVEQAEWIIYVTDVGQQQHFDMFFSAAKMAGWLPGPNEKKFPKTSHVGFGLVLGSD 449

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            K+F+TRS + V+L ELLDE   RS    L +L +  +  + T  EL +  +AV YG +K
Sbjct: 450 GKRFRTRSTEVVRLVELLDEAKSRSKSELLQRLTENGKIVDWTDEELEQTSEAVGYGAVK 509

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADL +NR  +Y FSF++ML D+GNTAVYL YA+ RI SI R +  + ED
Sbjct: 510 YADLKNNRLTNYTFSFEQMLSDKGNTAVYLQYAHARICSIIRKSNKDVED 559



 Score =  149 bits (377), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 114/186 (61%), Gaps = 10/186 (5%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            L +L +  +  + T  EL +  +AV YG +KYADL +NR  +Y FSF++ML D+GNTAVY
Sbjct: 479  LQRLTENGKIVDWTDEELEQTSEAVGYGAVKYADLKNNRLTNYTFSFEQMLSDKGNTAVY 538

Query: 994  LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLC 1053
            L YA+ RI SI R +  + EDL++      +SL+H  E  L   L+R  +V+     +L 
Sbjct: 539  LQYAHARICSIIRKSNKDVEDLKMTG---AISLDHPDERVLGLYLIRFAEVVEEACTNLL 595

Query: 1054 LHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
             + +CEYLY++S  F++FY NC  +    E       T RLLL +ATA VM++CF++L I
Sbjct: 596  PNVVCEYLYNLSEMFTKFYTNCQVVGSPEE-------TSRLLLCQATAVVMRQCFNLLGI 648

Query: 1114 RTVHKM 1119
              V+K+
Sbjct: 649  TPVYKL 654



 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 12/109 (11%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
           KF D+QCN+AM L    K  G   KNP  I Q+IA  + S        + +I+    A P
Sbjct: 103 KFADYQCNNAMGLWSKVKGSGTSFKNPNAIGQAIAKNLPS--------SDIIESTSVAGP 154

Query: 106 GFVNVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           GFVN+ LS  +  ++++D++VNG++   P L  K R ++DFSSPNIA++
Sbjct: 155 GFVNIVLSNRWVAQRIQDMLVNGIKTWAPILPVK-RAVIDFSSPNIAKE 202


>gi|299471588|emb|CBN79450.1| Arginyl-tRNA Synthetase [Ectocarpus siliculosus]
          Length = 616

 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/365 (47%), Positives = 231/365 (63%), Gaps = 24/365 (6%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           S RD + D    A+  AF E    +  + ++  K   +FGD+QCN AMAL K  K K   
Sbjct: 26  SPRDTIVDAVREALVDAFGEKFRDSRPLVTSATK--PEFGDYQCNAAMALAKPLKCK--- 80

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG- 324
             P D+A S+A  +       P L+ + +  E+A PGF+N+ L   +   ++K ++ +G 
Sbjct: 81  --PRDVASSLAEKL------GPRLSAICEAPEIAGPGFINLRLRDGFVAAKVKSMVGDGE 132

Query: 325 -VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
            +  P +    RV+VDFSSPNIAKEMHVGHLRSTIIGDTI R+LE+ GHDVVRLNHVGDW
Sbjct: 133 RLGVPRVTNPERVVVDFSSPNIAKEMHVGHLRSTIIGDTICRVLEFRGHDVVRLNHVGDW 192

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPP----IADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           GTQFGMLI+HL++  P+ +         + DL  FYKE+K RFDED+ FK+ A   VV L
Sbjct: 193 GTQFGMLISHLKEVAPEAIEDGAEDKFNVGDLVTFYKEAKARFDEDDGFKEIARAEVVKL 252

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  D + K+AW ++C+ SRR FQ IY  L V L ERGESFY   +  +V  LE +GLLE 
Sbjct: 253 QAGDAESKRAWGVLCEASRRGFQDIYSLLGVELEERGESFYNVMLPDVVSDLESEGLLEE 312

Query: 500 DDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLG 554
            DG K+++ E     D  S P+ + KSDGGF Y T+DLAAIR R+  E+AD ++YV D+G
Sbjct: 313 SDGAKVVYLEGFESRDGTSQPLLVKKSDGGFMYSTTDLAAIRHRVTTERADRVLYVVDVG 372

Query: 555 QGVHF 559
           QG HF
Sbjct: 373 QGSHF 377



 Score =  256 bits (654), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 148/350 (42%), Positives = 196/350 (56%), Gaps = 57/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP----IADL 620
           STIIGDTI R+LE+ GHDVVRLNHVGDWGTQFGMLI+HL++  P+ +         + DL
Sbjct: 165 STIIGDTICRVLEFRGHDVVRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKFNVGDL 224

Query: 621 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT 680
             FYKE+K RFDED+ FK+ A   VV LQ  D + K+AW ++C+ SRR FQ IY  L V 
Sbjct: 225 VTFYKEAKARFDEDDGFKEIARAEVVKLQAGDAESKRAWGVLCEASRRGFQDIYSLLGVE 284

Query: 681 LTERGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG---- 713
           L ERGESFY   +  +V  LE +G L                        L KK      
Sbjct: 285 LEERGESFYNVMLPDVVSDLESEGLLEESDGAKVVYLEGFESRDGTSQPLLVKKSDGGFM 344

Query: 714 --------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                               ++YV D+GQG HF  + + A++AG   P   ++  V FG+
Sbjct: 345 YSTTDLAAIRHRVTTERADRVLYVVDVGQGSHFAQVFQVARRAG-FAPEGVQLQHVPFGL 403

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT-----ELTPTELSEAQQAV 808
           V GED KKFKTR+G+TVKLS+LL E +R + + ++ +         +    EL    + V
Sbjct: 404 VQGEDGKKFKTRAGETVKLSDLLMEAVRIAGESIRKRREEEGGEGYQADEVELERVSKVV 463

Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
             G +KYADLS NR  +Y FS+ KML  +GNTA Y+LYA+ R+  I + A
Sbjct: 464 GIGAVKYADLSMNRESNYRFSYAKMLSLQGNTAPYMLYAFARVQGIKKKA 513



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 8/158 (5%)

Query: 949  TELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 1008
             EL    + V  G +KYADLS NR  +Y FS+ KML  +GNTA Y+LYA+ R+  I + A
Sbjct: 454  VELERVSKVVGIGAVKYADLSMNRESNYRFSYAKMLSLQGNTAPYMLYAFARVQGIKKKA 513

Query: 1009 GINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAF 1068
                 DL      T +S+   +E ALA+ LLR+ +VL  +  DL  H LC+Y++++S+ F
Sbjct: 514  TEGLGDL----SGTEISMGTPEEAALARMLLRLPEVLEDLEVDLFPHRLCDYMFELSSQF 569

Query: 1069 SEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            + FY+NC        G+ +     R      TA V+++
Sbjct: 570  NRFYENCPV----NTGETEEFKGSRTAFCSGTADVIER 603



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 17/157 (10%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S RD + D    A+  AF E    +  + ++  K   +FGD+QCN AMAL K  K K   
Sbjct: 26  SPRDTIVDAVREALVDAFGEKFRDSRPLVTSATK--PEFGDYQCNAAMALAKPLKCK--- 80

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG- 128
             P D+A S+A  +       P L+ + +  E A PGF+N+ L   +   ++K ++ +G 
Sbjct: 81  --PRDVASSLAEKL------GPRLSAICEAPEIAGPGFINLRLRDGFVAAKVKSMVGDGE 132

Query: 129 -VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
            +  P +    RV+VDFSSPNIA++      HL S I
Sbjct: 133 RLGVPRVTNPERVVVDFSSPNIAKE--MHVGHLRSTI 167


>gi|307104781|gb|EFN53033.1| hypothetical protein CHLNCDRAFT_26194 [Chlorella variabilis]
          Length = 601

 Score =  321 bits (823), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/364 (45%), Positives = 233/364 (64%), Gaps = 19/364 (5%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           S+R  L+  F  ++  AFP +  + A V   N     KFGD+QCN+AM L    K + + 
Sbjct: 36  SLRQRLAAAFQQSLDAAFPSMAGEPAIVNPCNNP---KFGDYQCNNAMGLHGKLKGQPDA 92

Query: 266 -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            KNP  +A+++       +A  P    V +   +A PGF+N+ +S  +    +  ++  G
Sbjct: 93  PKNPRAVAEAL-------VAHLPETGMVAE-TSLAGPGFINIRISPDWLASHLTTMLRQG 144

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           +    P      RV+VDFSSPN+AKEMHVGHLRSTIIGDT++  LE+ G DV+RLNH+GD
Sbjct: 145 ISTWAPAGYAGRRVVVDFSSPNVAKEMHVGHLRSTIIGDTLAHTLEFCGADVLRLNHIGD 204

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSP--PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           WGTQFGMLI ++ +K P+ L  +    + DLQ  Y+ +K+RFDE+E FK+RA + V  LQ
Sbjct: 205 WGTQFGMLIQYIAEKRPEGLNAASDEDVQDLQVLYRAAKQRFDEEEAFKQRAREAVTELQ 264

Query: 441 RFDPDYKK--AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
              P+Y +  AW+ ICD SRR+FQKIYDRL V L ERGESFY   ++ +V  L ++G+ E
Sbjct: 265 GGRPEYLQACAWQRICDASRREFQKIYDRLGVQLQERGESFYNPMLKPVVDDLMQRGIAE 324

Query: 499 LDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
             DG K ++ E    IP+ + KSDGGF Y ++D+AA++ RIE EKADWI+YVTD+GQ  H
Sbjct: 325 ESDGAKCVFVEG-AQIPLIVQKSDGGFGYASTDMAAVKHRIETEKADWIIYVTDMGQSSH 383

Query: 559 FRLL 562
           F L+
Sbjct: 384 FDLV 387



 Score =  250 bits (639), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 142/340 (41%), Positives = 191/340 (56%), Gaps = 61/340 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGDT++  LE+ G DV+RLNH+GDWGTQFGMLI ++ +K P+ L  +    + DLQ 
Sbjct: 178 STIIGDTLAHTLEFCGADVLRLNHIGDWGTQFGMLIQYIAEKRPEGLNAASDEDVQDLQV 237

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK--AWEMICDVSRRDFQKIYDRLNVT 680
            Y+ +K+RFDE+E FK+RA + V  LQ   P+Y +  AW+ ICD SRR+FQKIYDRL V 
Sbjct: 238 LYRAAKQRFDEEEAFKQRAREAVTELQGGRPEYLQACAWQRICDASRREFQKIYDRLGVQ 297

Query: 681 LTERGESFYQKHMEQLVPYLEKKG------------------------------------ 704
           L ERGESFY   ++ +V  L ++G                                    
Sbjct: 298 LQERGESFYNPMLKPVVDDLMQRGIAEESDGAKCVFVEGAQIPLIVQKSDGGFGYASTDM 357

Query: 705 -----NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR 759
                 +   K   I+YVTD+GQ  HF L+    +  G                      
Sbjct: 358 AAVKHRIETEKADWIIYVTDMGQSSHFDLVGGGGRGHGGGGGGGD--------------G 403

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           KKF++RSGD V+L ELLDE  +R +D +K+  R  + TP E+ E   A+ YG +KYADL 
Sbjct: 404 KKFRSRSGDVVRLVELLDEAKQRIVDTVKE--RRPDATPEEIEEMAAAMGYGAVKYADLK 461

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           ++R  +Y FS+D ML  +GNTAVY LYA+ RIASI R +G
Sbjct: 462 NHRTTNYKFSYDDMLSQQGNTAVYQLYAHARIASIVRKSG 501



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 109/180 (60%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K R  + TP E+ E   A+ YG +KYADL ++R  +Y FS+D ML  +GNTAVY LYA+ 
Sbjct: 432  KERRPDATPEEIEEMAAAMGYGAVKYADLKNHRTTNYKFSYDDMLSQQGNTAVYQLYAHA 491

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RIASI R +G +  +L   A++  V L HEKE ALA  + R +D +     +L  H + E
Sbjct: 492  RIASIVRKSGRDVSEL---AKTARVVLGHEKEVALALQIARFSDAVDECLAELLPHRITE 548

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD+STAF++FY  C  +    E         RLLL EATA  M+ CF +L I+ ++++
Sbjct: 549  YLYDLSTAFNQFYTECQVVGSPEE-------DSRLLLCEATALTMRTCFQLLGIQVLYRI 601



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 16/147 (10%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+R  L+  F  ++  AFP +  + A V   N     KFGD+QCN+AM L    K + + 
Sbjct: 36  SLRQRLAAAFQQSLDAAFPSMAGEPAIVNPCNNP---KFGDYQCNNAMGLHGKLKGQPDA 92

Query: 70  -KNPFDIAQS-IASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
            KNP  +A++ +A +  + +    SL         A PGF+N+ +S  +    +  ++  
Sbjct: 93  PKNPRAVAEALVAHLPETGMVAETSL---------AGPGFINIRISPDWLASHLTTMLRQ 143

Query: 128 GVQ--PPTLNKKLRVLVDFSSPNIARK 152
           G+    P      RV+VDFSSPN+A++
Sbjct: 144 GISTWAPAGYAGRRVVVDFSSPNVAKE 170


>gi|255546293|ref|XP_002514206.1| arginyl-tRNA synthetase, putative [Ricinus communis]
 gi|223546662|gb|EEF48160.1| arginyl-tRNA synthetase, putative [Ricinus communis]
          Length = 592

 Score =  321 bits (822), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/362 (46%), Positives = 239/362 (66%), Gaps = 20/362 (5%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG-E 264
           +++  ++ +F  +++   P   D    VA+       KFGD+QCN+AM+L    K K  E
Sbjct: 13  NLKKQIAKLFEASLRETVPSEPDVEPLVAACT----AKFGDYQCNNAMSLWSKIKGKNTE 68

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            K P  + Q+I          N   ++VI+   VA PGFVNV LS+ +  ++I+ ++++G
Sbjct: 69  FKGPPAVGQAIMK--------NLPPSEVIESCSVAGPGFVNVVLSKKWMSKKIQKMLIDG 120

Query: 325 V---QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
           +    P  L K  R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+LE+   DV+R NHVG
Sbjct: 121 IDSWAPKLLVK--RAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSKVDVLRRNHVG 178

Query: 382 DWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           DWGTQFGMLI  L +KFP++       I DLQAFYK SK+RFD D  FK+RA + VV LQ
Sbjct: 179 DWGTQFGMLIEFLFEKFPNFEDVNERAIGDLQAFYKASKQRFDADSEFKERAQKAVVRLQ 238

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
             +P Y++AW  ICD+SR++F K+Y RL V L E+GESFY  ++  ++  L  +GL+E  
Sbjct: 239 GGEPKYRQAWAQICDISRKEFDKVYQRLGVQLEEKGESFYNPYIPGIIDALSNQGLVEES 298

Query: 501 DGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +G ++++ E   +IP+ +VKSDGGF Y ++DL A+  R+ EEKA+WI+YVTD+GQ  HF 
Sbjct: 299 EGARVIFIEGV-NIPLIVVKSDGGFNYASTDLTALWYRLNEEKAEWIIYVTDVGQQQHFD 357

Query: 561 LL 562
           ++
Sbjct: 358 MV 359



 Score =  282 bits (721), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 150/345 (43%), Positives = 210/345 (60%), Gaps = 45/345 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++R+LE+   DV+R NHVGDWGTQFGMLI  L +KFP++       I DLQAF
Sbjct: 153 STIIGDTLARMLEFSKVDVLRRNHVGDWGTQFGMLIEFLFEKFPNFEDVNERAIGDLQAF 212

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK+RFD D  FK+RA + VV LQ  +P Y++AW  ICD+SR++F K+Y RL V L E
Sbjct: 213 YKASKQRFDADSEFKERAQKAVVRLQGGEPKYRQAWAQICDISRKEFDKVYQRLGVQLEE 272

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++  ++  L  +G                                       
Sbjct: 273 KGESFYNPYIPGIIDALSNQGLVEESEGARVIFIEGVNIPLIVVKSDGGFNYASTDLTAL 332

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKT---RMDFVGFGVVLGEDR 759
              L+  K   I+YVTD+GQ  HF ++ + AK+A  L  + +   +   VGFG+VLG+D 
Sbjct: 333 WYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRASWLPADDSMFPKASHVGFGLVLGDDG 392

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TR+ + V+L +LLDE   RS   L ++ +  E T  EL +  +A+ YG +KYADL 
Sbjct: 393 KRFRTRATEVVRLVDLLDEAKTRSKAVLVERGKAEEWTEQELEQIAEAIGYGAVKYADLK 452

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           +NR  +Y F++D+ML+D+GNTAVYLLYA+ RI SI R +G + E+
Sbjct: 453 NNRLTNYTFNYDQMLNDKGNTAVYLLYAHARICSIIRKSGRDMEE 497



 Score =  149 bits (377), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E T  EL +  +A+ YG +KYADL +NR  +Y F++D+ML+D+GNTA
Sbjct: 415  RSKAVLVERGKAEEWTEQELEQIAEAIGYGAVKYADLKNNRLTNYTFNYDQMLNDKGNTA 474

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G + E+L+   +   + L+H  E +L   LL+  + +     +
Sbjct: 475  VYLLYAHARICSIIRKSGRDMEELK---KMGSLVLDHPDERSLGLHLLQFAETVEEACTN 531

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LCEYLY++S  F++FY NC  +E   E       T RLLL EATA VM+KCF +L
Sbjct: 532  LLPNVLCEYLYNLSEYFTKFYSNCKVVESPEE-------TSRLLLCEATAVVMRKCFFLL 584

Query: 1112 NIRTVHKM 1119
             I  V+K+
Sbjct: 585  GIVPVYKI 592



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 18/147 (12%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG-E 68
           +++  ++ +F  +++   P   D    VA+       KFGD+QCN+AM+L    K K  E
Sbjct: 13  NLKKQIAKLFEASLRETVPSEPDVEPLVAACT----AKFGDYQCNNAMSLWSKIKGKNTE 68

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            K P  + Q+I          N   ++VI+    A PGFVNV LS+ +  ++++ ++++G
Sbjct: 69  FKGPPAVGQAIMK--------NLPPSEVIESCSVAGPGFVNVVLSKKWMSKKIQKMLIDG 120

Query: 129 V---QPPTLNKKLRVLVDFSSPNIARK 152
           +    P  L K  R +VDFSSPNIA++
Sbjct: 121 IDSWAPKLLVK--RAVVDFSSPNIAKE 145


>gi|125550952|gb|EAY96661.1| hypothetical protein OsI_18575 [Oryza sativa Indica Group]
          Length = 606

 Score =  320 bits (820), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 183/429 (42%), Positives = 253/429 (58%), Gaps = 30/429 (6%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           SV+  LS +   +++   PE+      V    E    KFGD+QCN+AM L    K  G  
Sbjct: 23  SVKQQLSKLVIASLRTTVPEV-----EVDPMVEVCTAKFGDYQCNNAMGLWSRIKGSGTS 77

Query: 266 -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            KNP  I Q+IA         N   + +I+   VA PGFVN+ LS  +  ++I+ ++VNG
Sbjct: 78  FKNPNAIGQAIAK--------NLPPSDIIESTSVAGPGFVNIVLSNSWVAKRIQGMLVNG 129

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           ++   P L  K R ++DFSSPNIAKEMHVGHLRSTIIGDT++R+ E+   +V+R NHVGD
Sbjct: 130 IKTWAPILPVK-RAVLDFSSPNIAKEMHVGHLRSTIIGDTLARMFEFSNVEVLRRNHVGD 188

Query: 383 WGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           WGTQFGMLI +L +KFP++    S  I DLQ FYK SK RFD D  FK RA Q VV LQ 
Sbjct: 189 WGTQFGMLIQYLFEKFPNWEEIGSQAIGDLQTFYKASKNRFDGDAEFKDRAQQAVVRLQG 248

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            +  Y+ AW  IC++SR +F  +Y  LNV L E+GESFY   + Q++  L  KGL++  +
Sbjct: 249 GEERYRAAWNKICEISRNEFDMVYKLLNVKLEEKGESFYNPFIPQVLEELNNKGLIKESE 308

Query: 502 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           G K+++ E    IP+ +VK DGGF Y ++DLAA+  R+  EKA+WI+YVTD+GQ  HF +
Sbjct: 309 GAKVIFIEGH-QIPLIVVKRDGGFNYASTDLAALWYRLNVEKAEWIIYVTDVGQQQHFDM 367

Query: 562 LEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 621
              +  +   +    E       + NHVG     FG+++     +F    T+S  +  L 
Sbjct: 368 FFNAARMAGWLPDPKE---KKYPKTNHVG-----FGLVLGSDGKRFR---TRSTEVVRLI 416

Query: 622 AFYKESKKR 630
               E+K R
Sbjct: 417 ELLDEAKSR 425



 Score =  269 bits (687), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 151/350 (43%), Positives = 200/350 (57%), Gaps = 50/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++R+ E+   +V+R NHVGDWGTQFGMLI +L +KFP++    S  I DLQ F
Sbjct: 162 STIIGDTLARMFEFSNVEVLRRNHVGDWGTQFGMLIQYLFEKFPNWEEIGSQAIGDLQTF 221

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK RFD D  FK RA Q VV LQ  +  Y+ AW  IC++SR +F  +Y  LNV L E
Sbjct: 222 YKASKNRFDGDAEFKDRAQQAVVRLQGGEERYRAAWNKICEISRNEFDMVYKLLNVKLEE 281

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY   + Q++  L  KG                                       
Sbjct: 282 KGESFYNPFIPQVLEELNNKGLIKESEGAKVIFIEGHQIPLIVVKRDGGFNYASTDLAAL 341

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNK----TRMDFVGFGVVLGED 758
              L++ K   I+YVTD+GQ  HF +    A+ AG L   K     + + VGFG+VLG D
Sbjct: 342 WYRLNVEKAEWIIYVTDVGQQQHFDMFFNAARMAGWLPDPKEKKYPKTNHVGFGLVLGSD 401

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            K+F+TRS + V+L ELLDE   RS    L +L +  +  + T  EL +  +AV YG +K
Sbjct: 402 GKRFRTRSTEVVRLIELLDEAKSRSKSELLQRLTENGKIVDWTEEELEKTSEAVGYGAVK 461

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADL +NR  +Y FSF++ML D+GNTAVYL YA+ RI SI R +  + E+
Sbjct: 462 YADLKNNRLTNYTFSFEQMLSDKGNTAVYLQYAHARICSIIRKSNKDVEE 511



 Score =  150 bits (378), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 114/186 (61%), Gaps = 10/186 (5%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            L +L +  +  + T  EL +  +AV YG +KYADL +NR  +Y FSF++ML D+GNTAVY
Sbjct: 431  LQRLTENGKIVDWTEEELEKTSEAVGYGAVKYADLKNNRLTNYTFSFEQMLSDKGNTAVY 490

Query: 994  LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLC 1053
            L YA+ RI SI R +  + E+L++   S  +SL+H  E  L   L+R  +V+     +L 
Sbjct: 491  LQYAHARICSIIRKSNKDVEELKM---SGAISLDHPDERVLGLYLIRFAEVVEEACTNLL 547

Query: 1054 LHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
             + LCEYLY++S  F+ FY NC  +    E       T RLLL +ATA VM++CF++L I
Sbjct: 548  PNVLCEYLYNLSEMFTRFYTNCQVVGSPEE-------TSRLLLCQATAVVMRQCFELLGI 600

Query: 1114 RTVHKM 1119
              V+K+
Sbjct: 601  TPVYKL 606



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 17/146 (11%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           SV+  LS +   +++   PE+      V    E    KFGD+QCN+AM L    K  G  
Sbjct: 23  SVKQQLSKLVIASLRTTVPEV-----EVDPMVEVCTAKFGDYQCNNAMGLWSRIKGSGTS 77

Query: 70  -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            KNP  I Q+IA         N   + +I+    A PGFVN+ LS  +  ++++ ++VNG
Sbjct: 78  FKNPNAIGQAIAK--------NLPPSDIIESTSVAGPGFVNIVLSNSWVAKRIQGMLVNG 129

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           ++   P L  K R ++DFSSPNIA++
Sbjct: 130 IKTWAPILPVK-RAVLDFSSPNIAKE 154


>gi|15219682|ref|NP_176826.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
 gi|12322268|gb|AAG51163.1|AC074025_13 arginyl-tRNA synthetase [Arabidopsis thaliana]
 gi|14030685|gb|AAK53017.1|AF375433_1 At1g66530/F28G11_14 [Arabidopsis thaliana]
 gi|20334712|gb|AAM16217.1| At1g66530/F28G11_14 [Arabidopsis thaliana]
 gi|332196400|gb|AEE34521.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 590

 Score =  320 bits (820), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 177/396 (44%), Positives = 253/396 (63%), Gaps = 34/396 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQS-IASVVTSELATNPSLAKVIDKIEVAK 300
           KFGD+QCN+AM L  + K KG + + P  + Q+ I S+ TSE+         ++   +A 
Sbjct: 44  KFGDYQCNNAMGLWSLIKGKGTQFRGPPAVGQALIQSLPTSEM---------VESCSIAG 94

Query: 301 PGFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           PGFVNV LS  +  + I++++V+G+    PTL+ K R +VDFSSPNIAKEMHVGHLRSTI
Sbjct: 95  PGFVNVVLSSKWMAKSIENMLVDGIDTWAPTLSVK-RAVVDFSSPNIAKEMHVGHLRSTI 153

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKS-PPIADLQAFYKE 417
           IGDT++R+LEY   +V+R NHVGDWGTQFGMLI  L +KFPD  + +   I DLQ FY+E
Sbjct: 154 IGDTLARMLEYSKVEVLRRNHVGDWGTQFGMLIEFLFEKFPDTESVTETAIGDLQVFYRE 213

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           SK +FD +  FK++A Q VV LQ  DP Y++AW  IC++SR +F K+Y RL + L E+GE
Sbjct: 214 SKLKFDLNPEFKEKAQQAVVRLQGGDPVYRQAWAKICEISRNEFAKVYKRLRIELEEKGE 273

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQ 537
           SFY  ++  ++  L  KGL+E   G ++++ E    IP+ +VKSDGGF Y ++DL A+  
Sbjct: 274 SFYNPYIANVIEELSSKGLVEESKGARVIFIEGF-KIPLIVVKSDGGFNYASTDLTALWY 332

Query: 538 RIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHD---VVRLNHVGDWGT 594
           R+ EEKA+WI+YVTD+GQ  HF +  ++       +R   +L  D     R++HVG    
Sbjct: 333 RLNEEKAEWIIYVTDVGQQQHFDMFFKA-------ARKAGWLPDDDKTYPRVSHVG---- 381

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            FG+++     +F    T++  +  L     E+K R
Sbjct: 382 -FGLVLGDDNKRFR---TRAAEVVRLADLLDEAKDR 413



 Score =  281 bits (719), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/340 (45%), Positives = 209/340 (61%), Gaps = 45/340 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKS-PPIADLQAF 623
           STIIGDT++R+LEY   +V+R NHVGDWGTQFGMLI  L +KFPD  + +   I DLQ F
Sbjct: 151 STIIGDTLARMLEYSKVEVLRRNHVGDWGTQFGMLIEFLFEKFPDTESVTETAIGDLQVF 210

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ESK +FD +  FK++A Q VV LQ  DP Y++AW  IC++SR +F K+Y RL + L E
Sbjct: 211 YRESKLKFDLNPEFKEKAQQAVVRLQGGDPVYRQAWAKICEISRNEFAKVYKRLRIELEE 270

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++  ++  L  KG                                       
Sbjct: 271 KGESFYNPYIANVIEELSSKGLVEESKGARVIFIEGFKIPLIVVKSDGGFNYASTDLTAL 330

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKT--RMDFVGFGVVLGEDR 759
              L+  K   I+YVTD+GQ  HF +  + A+KAG L + +KT  R+  VGFG+VLG+D 
Sbjct: 331 WYRLNEEKAEWIIYVTDVGQQQHFDMFFKAARKAGWLPDDDKTYPRVSHVGFGLVLGDDN 390

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TR+ + V+L++LLDE   RS   L ++ +  E +P EL +  +AV YG +KYADL 
Sbjct: 391 KRFRTRAAEVVRLADLLDEAKDRSKAALIERGKDKEWSPEELDQIAEAVGYGALKYADLK 450

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
            NR   Y FSFD+ML+D+G+TAVYLLYA+ RI SI R +G
Sbjct: 451 TNRITGYTFSFDQMLNDKGDTAVYLLYAHARICSIIRKSG 490



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 116/188 (61%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E +P EL +  +AV YG +KYADL  NR   Y FSFD+ML+D+G+TA
Sbjct: 413  RSKAALIERGKDKEWSPEELDQIAEAVGYGALKYADLKTNRITGYTFSFDQMLNDKGDTA 472

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G + ++L+   ++  ++L+H  E AL   LL+  + +      
Sbjct: 473  VYLLYAHARICSIIRKSGKDIDELK---KTGKIALDHAAERALGLHLLQFAETVEEACTT 529

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LC+YLY +S  F++FY NC  +   AE       T RLLL EATA VM+KCF +L
Sbjct: 530  LLPNVLCKYLYYLSEEFTKFYSNCQ-VNGSAE------ETSRLLLCEATAIVMRKCFHLL 582

Query: 1112 NIRTVHKM 1119
             I  V+K+
Sbjct: 583  GITPVYKL 590



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 14/110 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQS-IASVVTSELATNPSLAKVIDKIEAAK 104
           KFGD+QCN+AM L  + K KG + + P  + Q+ I S+ TSE+  + S+         A 
Sbjct: 44  KFGDYQCNNAMGLWSLIKGKGTQFRGPPAVGQALIQSLPTSEMVESCSI---------AG 94

Query: 105 PGFVNVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           PGFVNV LS  +  + +++++V+G+    PTL+ K R +VDFSSPNIA++
Sbjct: 95  PGFVNVVLSSKWMAKSIENMLVDGIDTWAPTLSVK-RAVVDFSSPNIAKE 143


>gi|2632103|emb|CAB11467.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 589

 Score =  320 bits (819), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 177/396 (44%), Positives = 253/396 (63%), Gaps = 34/396 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQS-IASVVTSELATNPSLAKVIDKIEVAK 300
           KFGD+QCN+AM L  + K KG + + P  + Q+ I S+ TSE+         ++   +A 
Sbjct: 44  KFGDYQCNNAMGLWSLIKGKGTQFRGPPAVGQALIQSLPTSEM---------VESCSIAG 94

Query: 301 PGFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           PGFVNV LS  +  + I++++V+G+    PTL+ K R +VDFSSPNIAKEMHVGHLRSTI
Sbjct: 95  PGFVNVVLSSKWMAKSIENMLVDGIDTWAPTLSVK-RAVVDFSSPNIAKEMHVGHLRSTI 153

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKS-PPIADLQAFYKE 417
           IGDT++R+LEY   +V+R NHVGDWGTQFGMLI  L +KFPD  + +   I DLQ FY+E
Sbjct: 154 IGDTLARMLEYSKVEVLRRNHVGDWGTQFGMLIEFLFEKFPDTESVTETAIGDLQVFYRE 213

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           SK +FD +  FK++A Q VV LQ  DP Y++AW  IC++SR +F K+Y RL + L E+GE
Sbjct: 214 SKLKFDLNPEFKEKAQQAVVRLQGGDPVYRQAWAKICEISRNEFAKVYKRLRIELEEKGE 273

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQ 537
           SFY  ++  ++  L  KGL+E   G ++++ E    IP+ +VKSDGGF Y ++DL A+  
Sbjct: 274 SFYNPYIANVIEELSSKGLVEESKGARVIFIEGF-KIPLIVVKSDGGFNYASTDLTALWY 332

Query: 538 RIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHD---VVRLNHVGDWGT 594
           R+ EEKA+WI+YVTD+GQ  HF +  ++       +R   +L  D     R++HVG    
Sbjct: 333 RLNEEKAEWIIYVTDVGQQQHFDMFFKA-------ARKAGWLPDDDKTYPRVSHVG---- 381

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            FG+++     +F    T++  +  L     E+K R
Sbjct: 382 -FGLVLGDDNKRFR---TRAAEVVRLADLLDEAKDR 413



 Score =  281 bits (719), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/340 (45%), Positives = 209/340 (61%), Gaps = 45/340 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKS-PPIADLQAF 623
           STIIGDT++R+LEY   +V+R NHVGDWGTQFGMLI  L +KFPD  + +   I DLQ F
Sbjct: 151 STIIGDTLARMLEYSKVEVLRRNHVGDWGTQFGMLIEFLFEKFPDTESVTETAIGDLQVF 210

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ESK +FD +  FK++A Q VV LQ  DP Y++AW  IC++SR +F K+Y RL + L E
Sbjct: 211 YRESKLKFDLNPEFKEKAQQAVVRLQGGDPVYRQAWAKICEISRNEFAKVYKRLRIELEE 270

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++  ++  L  KG                                       
Sbjct: 271 KGESFYNPYIANVIEELSSKGLVEESKGARVIFIEGFKIPLIVVKSDGGFNYASTDLTAL 330

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKT--RMDFVGFGVVLGEDR 759
              L+  K   I+YVTD+GQ  HF +  + A+KAG L + +KT  R+  VGFG+VLG+D 
Sbjct: 331 WYRLNEEKAEWIIYVTDVGQQQHFDMFFKAARKAGWLPDDDKTYPRVSHVGFGLVLGDDN 390

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TR+ + V+L++LLDE   RS   L ++ +  E +P EL +  +AV YG +KYADL 
Sbjct: 391 KRFRTRAAEVVRLADLLDEAKDRSKAALIERGKDKEWSPEELDQIAEAVGYGALKYADLK 450

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
            NR   Y FSFD+ML+D+G+TAVYLLYA+ RI SI R +G
Sbjct: 451 TNRITGYTFSFDQMLNDKGDTAVYLLYAHARICSIIRKSG 490



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 115/188 (61%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E +P EL +  +AV YG +KYADL  NR   Y FSFD+ML+D+G+TA
Sbjct: 413  RSKAALIERGKDKEWSPEELDQIAEAVGYGALKYADLKTNRITGYTFSFDQMLNDKGDTA 472

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G + ++L+   ++  ++L+H  E AL   LL+  + +      
Sbjct: 473  VYLLYAHARICSIIRKSGKDIDELK---KTGKIALDHAAERALGLHLLQFAETVEEACTT 529

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LC+YLY +S  F++FY NC  +   AE       T RLLL E TA VM+KCF +L
Sbjct: 530  LLPNVLCKYLYYLSEEFTKFYSNCQ-VNGSAE------ETSRLLLCE-TAIVMRKCFHLL 581

Query: 1112 NIRTVHKM 1119
             I  V+K+
Sbjct: 582  GITPVYKL 589



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 14/110 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQS-IASVVTSELATNPSLAKVIDKIEAAK 104
           KFGD+QCN+AM L  + K KG + + P  + Q+ I S+ TSE+  + S+         A 
Sbjct: 44  KFGDYQCNNAMGLWSLIKGKGTQFRGPPAVGQALIQSLPTSEMVESCSI---------AG 94

Query: 105 PGFVNVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           PGFVNV LS  +  + +++++V+G+    PTL+ K R +VDFSSPNIA++
Sbjct: 95  PGFVNVVLSSKWMAKSIENMLVDGIDTWAPTLSVK-RAVVDFSSPNIAKE 143


>gi|302854025|ref|XP_002958524.1| hypothetical protein VOLCADRAFT_108162 [Volvox carteri f.
           nagariensis]
 gi|300256171|gb|EFJ40444.1| hypothetical protein VOLCADRAFT_108162 [Volvox carteri f.
           nagariensis]
          Length = 656

 Score =  319 bits (818), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 180/435 (41%), Positives = 257/435 (59%), Gaps = 37/435 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL-CKIFKDKGE 264
           S+R+ L ++F  A+ V+FP +  +    A  N K     GD+QCN+AMAL  K+      
Sbjct: 10  SIRNELLELFRTALTVSFPSVSAEPVVAACNNAKN----GDYQCNNAMALFGKLKGTPSA 65

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            K P D+A +I   + +          +I +  +A PGF+N+ LSR     ++ +++V G
Sbjct: 66  PKAPRDVATAIVGALPAN--------GLIAETSLAGPGFINIRLSRDSLSTRLSEMLVKG 117

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           +    PT     +V++DFSSPN+AKEMHVGHLRSTIIGDT+ R+ EY G DV+RLNHVGD
Sbjct: 118 LASWAPTGYIGKKVVIDFSSPNVAKEMHVGHLRSTIIGDTLCRIFEYCGADVLRLNHVGD 177

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPP-------IADLQAFYKESKKRFDEDEIFKKRAYQC 435
           WGTQFGMLI H+ D     +            +ADLQ  Y+ +KKRFDE+E FK RA + 
Sbjct: 178 WGTQFGMLIEHMADARRLRVAAGGEDKDMDEDVADLQELYRAAKKRFDEEEEFKTRAREA 237

Query: 436 VVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKG 495
           V  LQ  DP+   +W+ IC  SRR+F+ IY RL VTL ERGESFY   ++ +V  L+  G
Sbjct: 238 VTRLQSGDPESLASWQRICAASRREFEAIYSRLGVTLQERGESFYNPMLKDVVEELKAAG 297

Query: 496 LLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
           +  +D+G   ++ E + S+P+ + KSDGGF Y ++D+AAI+ R+ EEKADWI+YVTD+GQ
Sbjct: 298 VATIDNGAACVFVEGQ-SVPLIVQKSDGGFGYASTDMAAIKHRLNEEKADWIIYVTDVGQ 356

Query: 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP 615
             HF L+  +         L++  G  V   +HVG     FG+++     +F    T+S 
Sbjct: 357 SQHFELVFAA---AKKAGWLVDGSGPKV---SHVG-----FGLVLGEDGKRFR---TRSG 402

Query: 616 PIADLQAFYKESKKR 630
            +  L     E+K R
Sbjct: 403 DLVRLVELLDEAKSR 417



 Score =  275 bits (703), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 152/345 (44%), Positives = 201/345 (58%), Gaps = 51/345 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP-------I 617
           STIIGDT+ R+ EY G DV+RLNHVGDWGTQFGMLI H+ D     +            +
Sbjct: 151 STIIGDTLCRIFEYCGADVLRLNHVGDWGTQFGMLIEHMADARRLRVAAGGEDKDMDEDV 210

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADLQ  Y+ +KKRFDE+E FK RA + V  LQ  DP+   +W+ IC  SRR+F+ IY RL
Sbjct: 211 ADLQELYRAAKKRFDEEEEFKTRAREAVTRLQSGDPESLASWQRICAASRREFEAIYSRL 270

Query: 678 NVTLTERGESFYQKHMEQLVPYLEKKG--------------------------------- 704
            VTL ERGESFY   ++ +V  L+  G                                 
Sbjct: 271 GVTLQERGESFYNPMLKDVVEELKAAGVATIDNGAACVFVEGQSVPLIVQKSDGGFGYAS 330

Query: 705 --------NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAG-ILNPNKTRMDFVGFGVVL 755
                    L+  K   I+YVTD+GQ  HF L+   AKKAG +++ +  ++  VGFG+VL
Sbjct: 331 TDMAAIKHRLNEEKADWIIYVTDVGQSQHFELVFAAAKKAGWLVDGSGPKVSHVGFGLVL 390

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT--ELTPTELSEAQQAVAYGCI 813
           GED K+F+TRSGD V+L ELLDE   R    ++++      E+   E+ +A  A+ YG +
Sbjct: 391 GEDGKRFRTRSGDLVRLVELLDEAKSRCAATIRERRAEAGEEVNEAEVEDAACAMGYGAV 450

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADL ++R  +Y FSFD+ML+ +GNTAVYLLYA+ RIA I R A
Sbjct: 451 KYADLKNHRTTNYKFSFDEMLNLKGNTAVYLLYAHARIAGIVRKA 495



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 111/235 (47%), Gaps = 70/235 (29%)

Query: 945  ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 1004
            E+   E+ +A  A+ YG +KYADL ++R  +Y FSFD+ML+ +GNTAVYLLYA+ RIA I
Sbjct: 432  EVNEAEVEDAACAMGYGAVKYADLKNHRTTNYKFSFDEMLNLKGNTAVYLLYAHARIAGI 491

Query: 1005 ARTAGINSEDLRVAAQSTPVSLEHEK--------------------------EFALAKTL 1038
             R A    +D+   A  TP+SL+H K                          E  LA  L
Sbjct: 492  VRKA---DKDVYALAADTPISLDHPKHLYPSPSLFWPSHATVTATYFSPRLQELELALHL 548

Query: 1039 LRMNDVL------------------MLVTRDLCLHHL----------------CEYLYDI 1064
             ++ + L                   LV     L+ L                 +YLYD+
Sbjct: 549  CKLPEALEDAIEELAPNRRVDVAFRNLVPTGFTLNALDLPLRATHYRSIKLRVTDYLYDL 608

Query: 1065 STAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            S  F+ FY +C  +  + E         RLLL EATA VM+KCF++L IR ++++
Sbjct: 609  SEKFNSFYVDCKVLGSEQEAS-------RLLLCEATAVVMRKCFELLGIRPLYRI 656



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 15/146 (10%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL-CKIFKDKGE 68
           S+R+ L ++F  A+ V+FP +  +    A  N K     GD+QCN+AMAL  K+      
Sbjct: 10  SIRNELLELFRTALTVSFPSVSAEPVVAACNNAKN----GDYQCNNAMALFGKLKGTPSA 65

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            K P D+A +I   + +          +I +   A PGF+N+ LSR     ++ +++V G
Sbjct: 66  PKAPRDVATAIVGALPAN--------GLIAETSLAGPGFINIRLSRDSLSTRLSEMLVKG 117

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           +    PT     +V++DFSSPN+A++
Sbjct: 118 LASWAPTGYIGKKVVIDFSSPNVAKE 143


>gi|357134510|ref|XP_003568860.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Brachypodium
           distachyon]
          Length = 661

 Score =  319 bits (818), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 176/419 (42%), Positives = 257/419 (61%), Gaps = 27/419 (6%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           SV+  +S++   +++   PE+      V    E    KFGD+QCN+AM L    K  G  
Sbjct: 78  SVKQQISNLVVLSLRATVPEV-----DVEPMVEVCTAKFGDYQCNNAMGLWSRVKGSGTS 132

Query: 266 -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            KNP  I Q+I+         N     VI+   VA PGFVN+ LS  +  ++I+D++VNG
Sbjct: 133 FKNPNAIGQAISK--------NLPACDVIESTSVAGPGFVNIVLSNNWVAKRIQDMLVNG 184

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           ++   P L  K ++++DFSSPNIAKEMHVGHLRSTIIGDT++R+ E+   +V+R NHVGD
Sbjct: 185 IKTWAPILPVK-KLVIDFSSPNIAKEMHVGHLRSTIIGDTLARMFEFSNVEVLRRNHVGD 243

Query: 383 WGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           WGTQFGMLI +L +KFP++    +  I DLQ FYK SK RFD+D  FK RA Q VV LQ 
Sbjct: 244 WGTQFGMLIEYLFEKFPNWEEVGNQAIGDLQLFYKASKARFDDDAEFKDRAQQAVVRLQG 303

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            +  Y+ AW+ IC++SR +F ++Y  LNV + E+GESFY  ++ Q++  L  +GL+   +
Sbjct: 304 GEEKYRAAWKKICEISRNEFDQVYKILNVQIEEKGESFYNPYIPQVLEKLSNQGLITESE 363

Query: 502 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           G ++++ E    IP+ +VK DGGF Y ++DLAA+  R+ EEKA+WI+YVTD+GQ  HF +
Sbjct: 364 GARVIFIEGH-QIPLIVVKRDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDM 422

Query: 562 LEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           + ++  +   +    E       + +HVG     FG+++     +F    T    +ADL
Sbjct: 423 VFKAARMAGWLPDPKE---KKFPKTSHVG-----FGLVLGADGKRFRTRSTDVVRLADL 473



 Score =  270 bits (689), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 148/351 (42%), Positives = 209/351 (59%), Gaps = 52/351 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++R+ E+   +V+R NHVGDWGTQFGMLI +L +KFP++    +  I DLQ F
Sbjct: 217 STIIGDTLARMFEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNWEEVGNQAIGDLQLF 276

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK RFD+D  FK RA Q VV LQ  +  Y+ AW+ IC++SR +F ++Y  LNV + E
Sbjct: 277 YKASKARFDDDAEFKDRAQQAVVRLQGGEEKYRAAWKKICEISRNEFDQVYKILNVQIEE 336

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++ Q++  L  +G                                       
Sbjct: 337 KGESFYNPYIPQVLEKLSNQGLITESEGARVIFIEGHQIPLIVVKRDGGFNYASTDLAAL 396

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF-----VGFGVVLGE 757
              L+  K   I+YVTD+GQ  HF ++ + A+ AG L P+     F     VGFG+VLG 
Sbjct: 397 WYRLNEEKAEWIIYVTDVGQQQHFDMVFKAARMAGWL-PDPKEKKFPKTSHVGFGLVLGA 455

Query: 758 DRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           D K+F+TRS D V+L++LLDE + RS    L +L +  +  + T  EL++  +AV +G +
Sbjct: 456 DGKRFRTRSTDVVRLADLLDEAISRSKSELLQRLTENGKIVDWTDEELAKTSEAVGHGAV 515

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADL +NR  +Y FSF++ML D+GNTAVYL YA+ RI SI R + ++ E+
Sbjct: 516 KYADLKNNRLTNYTFSFEQMLSDKGNTAVYLQYAHARICSIIRKSNMDVEE 566



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 112/186 (60%), Gaps = 10/186 (5%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            L +L +  +  + T  EL++  +AV +G +KYADL +NR  +Y FSF++ML D+GNTAVY
Sbjct: 486  LQRLTENGKIVDWTDEELAKTSEAVGHGAVKYADLKNNRLTNYTFSFEQMLSDKGNTAVY 545

Query: 994  LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLC 1053
            L YA+ RI SI R + ++ E+L+   +S  +SL H  E  L   L+R  +V+     +L 
Sbjct: 546  LQYAHARICSIIRKSNMDVEELK---KSGSISLGHPDERVLGLYLIRFAEVVEEACTNLL 602

Query: 1054 LHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
               LCEYLY++S  F+ FY NC  +    E         RLLL EATA VM++CF +L I
Sbjct: 603  PSVLCEYLYNLSEMFTRFYTNCQVVGSPEE-------PSRLLLCEATAIVMRQCFQLLGI 655

Query: 1114 RTVHKM 1119
              V+K+
Sbjct: 656  TPVYKL 661



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 17/146 (11%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           SV+  +S++   +++   PE+      V    E    KFGD+QCN+AM L    K  G  
Sbjct: 78  SVKQQISNLVVLSLRATVPEV-----DVEPMVEVCTAKFGDYQCNNAMGLWSRVKGSGTS 132

Query: 70  -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            KNP  I Q+I+         N     VI+    A PGFVN+ LS  +  ++++D++VNG
Sbjct: 133 FKNPNAIGQAISK--------NLPACDVIESTSVAGPGFVNIVLSNNWVAKRIQDMLVNG 184

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           ++   P L  K ++++DFSSPNIA++
Sbjct: 185 IKTWAPILPVK-KLVIDFSSPNIAKE 209


>gi|159475080|ref|XP_001695651.1| hypothetical protein CHLREDRAFT_119290 [Chlamydomonas reinhardtii]
 gi|158275662|gb|EDP01438.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 589

 Score =  319 bits (817), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 184/437 (42%), Positives = 259/437 (59%), Gaps = 33/437 (7%)

Query: 199 VPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL-CK 257
           V   D  SVR  ++D+F  A+  A+P  G +    A  N K     GD+QCN+AMAL  K
Sbjct: 2   VHTKDHGSVRAEVADLFRSALNTAYPNAGIEPVVAACNNAKN----GDYQCNNAMALFGK 57

Query: 258 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 317
           +   +   K P D+A +I       LA  P+   +I +  +A PGF+N+ L++     ++
Sbjct: 58  LKGTENAPKAPRDVANAI-------LAALPA-NDLISETSLAGPGFINIRLNKDALARRV 109

Query: 318 KDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
             ++ +G+    P  +   +V++DFSSPN+AKEMHVGHLRSTIIGDT+ R+ EY G DV+
Sbjct: 110 GSMLTDGLAKFAPEGHAGKKVVIDFSSPNVAKEMHVGHLRSTIIGDTLCRVFEYCGSDVL 169

Query: 376 RLNHVGDWGTQFGMLIAHLQD--KFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAY 433
           RLNHVGDWGTQFGMLI H+ D  K  D   K   +ADLQ  Y+ +KKRFDE+E FK RA 
Sbjct: 170 RLNHVGDWGTQFGMLIEHMADTRKARD-ADKDEDVADLQELYRAAKKRFDEEEEFKTRAR 228

Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 493
           + V  LQ  D     +W+ IC  SRR+F+ +Y RL VTL ERGESFY   ++ +V  L++
Sbjct: 229 EAVTRLQSGDATSLASWQRICAASRREFEALYTRLGVTLQERGESFYNPMLKGIVDGLKE 288

Query: 494 KGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            G+  +DDG   ++ E + S+P+ + KSDGGF Y ++D+AA+  R+ EEKADWI+YVTD+
Sbjct: 289 TGVATIDDGATCVFVEGQ-SVPLIVQKSDGGFGYASTDMAALHHRLNEEKADWIIYVTDV 347

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 613
           GQ  HF L+  +         L E  G  V   +HVG     FG+++     +F    T+
Sbjct: 348 GQSQHFELVFGAA---KKAGWLKEAAGPKV---SHVG-----FGLVLGEDGKRFR---TR 393

Query: 614 SPPIADLQAFYKESKKR 630
           S  +  L     E+K R
Sbjct: 394 SGDLVRLVELLDEAKSR 410



 Score =  263 bits (671), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 155/341 (45%), Positives = 199/341 (58%), Gaps = 47/341 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD--KFPDYLTKSPPIADLQA 622
           STIIGDT+ R+ EY G DV+RLNHVGDWGTQFGMLI H+ D  K  D   K   +ADLQ 
Sbjct: 150 STIIGDTLCRVFEYCGSDVLRLNHVGDWGTQFGMLIEHMADTRKARD-ADKDEDVADLQE 208

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
            Y+ +KKRFDE+E FK RA + V  LQ  D     +W+ IC  SRR+F+ +Y RL VTL 
Sbjct: 209 LYRAAKKRFDEEEEFKTRAREAVTRLQSGDATSLASWQRICAASRREFEALYTRLGVTLQ 268

Query: 683 ERGESFYQKHMEQLVPYLEKKG-------------------------------------- 704
           ERGESFY   ++ +V  L++ G                                      
Sbjct: 269 ERGESFYNPMLKGIVDGLKETGVATIDDGATCVFVEGQSVPLIVQKSDGGFGYASTDMAA 328

Query: 705 ---NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKTRMDFVGFGVVLGEDRK 760
               L+  K   I+YVTD+GQ  HF L+   AKKAG L      ++  VGFG+VLGED K
Sbjct: 329 LHHRLNEEKADWIIYVTDVGQSQHFELVFGAAKKAGWLKEAAGPKVSHVGFGLVLGEDGK 388

Query: 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT--ELTPTELSEAQQAVAYGCIKYADL 818
           +F+TRSGD V+L ELLDE   R    ++++ +    E+   E+ EA  A+ YG +KYADL
Sbjct: 389 RFRTRSGDLVRLVELLDEAKSRCAATIRERRQEAGEEIVEAEVEEAACAMGYGAVKYADL 448

Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
            ++R  +Y FSFD ML+ +GNTAVYLLYA+ RIA I R  G
Sbjct: 449 KNHRTTNYKFSFDDMLNLKGNTAVYLLYAHARIAGIVRKGG 489



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 103/162 (63%), Gaps = 10/162 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            + YG +KYADL ++R  +Y FSFD ML+ +GNTAVYLLYA+ RIA I R  G   +D+  
Sbjct: 438  MGYGAVKYADLKNHRTTNYKFSFDDMLNLKGNTAVYLLYAHARIAGIVRKGG---KDVYA 494

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
             A STPV+LEH KE  LA  L ++ + L     +L  + + +YLYD+S  F+ FY +C  
Sbjct: 495  LAASTPVTLEHPKELELALHLTKLPEALEDAIEELAPNRITDYLYDLSEKFNSFYVDCKV 554

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            +  + E         RLLL EATA VM+KCF++L I+ ++++
Sbjct: 555  LGSEQEAS-------RLLLVEATAVVMRKCFELLGIKPLYRI 589



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 19/166 (11%)

Query: 3   VPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL-CK 61
           V  +D  SVR  ++D+F  A+  A+P  G +    A  N K     GD+QCN+AMAL  K
Sbjct: 2   VHTKDHGSVRAEVADLFRSALNTAYPNAGIEPVVAACNNAKN----GDYQCNNAMALFGK 57

Query: 62  IFKDKGEKKNPFDIAQSI-ASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQ 120
           +   +   K P D+A +I A++  ++L +  SL         A PGF+N+ L++     +
Sbjct: 58  LKGTENAPKAPRDVANAILAALPANDLISETSL---------AGPGFINIRLNKDALARR 108

Query: 121 MKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           +  ++ +G+    P  +   +V++DFSSPN+A++      HL S I
Sbjct: 109 VGSMLTDGLAKFAPEGHAGKKVVIDFSSPNVAKE--MHVGHLRSTI 152


>gi|428179188|gb|EKX48060.1| hypothetical protein GUITHDRAFT_159514 [Guillardia theta CCMP2712]
          Length = 615

 Score =  316 bits (810), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 168/365 (46%), Positives = 227/365 (62%), Gaps = 30/365 (8%)

Query: 214 VFTHAVQVAFPELGD-----KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK------ 262
           +F  A+  AFP + +     +   V +T++    K GD+QCN AMA+ KI KDK      
Sbjct: 33  LFEKAIAQAFPIVPESLEKSRWLVVQATSDA---KHGDYQCNSAMAIHKILKDKVVSHAL 89

Query: 263 ----GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK 318
                  K P D++  I   +           KV+ K E+A PGF+N+FL   +  E   
Sbjct: 90  AGVADAPKAPRDVSARIVECIPKN--------KVLLKTEIAGPGFINIFLDPAFIAESFA 141

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            I+ NG QPP  ++   V+VDFSSPNIAKEMHVGHLRSTIIG++I R+LE+ GH V R+N
Sbjct: 142 KILKNGPQPPA-SQPQEVVVDFSSPNIAKEMHVGHLRSTIIGESICRVLEFCGHRVHRIN 200

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLI HL+  +P++  + P I+DL  FYKE+KKRFDED  FK+ +   VV 
Sbjct: 201 HVGDWGTQFGMLINHLRTAYPNFHEQPPNISDLTTFYKEAKKRFDEDAEFKEASRTSVVT 260

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTERGESFYQKHMEQLVPYLEKKGLL 497
           LQ  DP   + W+ +CDVSR  FQ +YDRL    L E+GESFY   +  +V  L  KG++
Sbjct: 261 LQAGDPYSLQCWKALCDVSRIQFQMVYDRLECAGLVEQGESFYNSRIPDVVKELTAKGMV 320

Query: 498 ELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGV 557
           E  DG KI+  +     P+  VKSDGG+ YD++DL A++ R++E KAD ++YVTD GQ  
Sbjct: 321 EESDGAKII--QCGKQFPLMAVKSDGGYGYDSTDLTAVKYRLQEMKADRVIYVTDAGQSE 378

Query: 558 HFRLL 562
           HF ++
Sbjct: 379 HFEMI 383



 Score =  289 bits (740), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 157/352 (44%), Positives = 206/352 (58%), Gaps = 46/352 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I R+LE+ GH V R+NHVGDWGTQFGMLI HL+  +P++  + P I+DL  FY
Sbjct: 178 STIIGESICRVLEFCGHRVHRINHVGDWGTQFGMLINHLRTAYPNFHEQPPNISDLTTFY 237

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTE 683
           KE+KKRFDED  FK+ +   VV LQ  DP   + W+ +CDVSR  FQ +YDRL    L E
Sbjct: 238 KEAKKRFDEDAEFKEASRTSVVTLQAGDPYSLQCWKALCDVSRIQFQMVYDRLECAGLVE 297

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY   +  +V  L  KG                                       
Sbjct: 298 QGESFYNSRIPDVVKELTAKGMVEESDGAKIIQCGKQFPLMAVKSDGGYGYDSTDLTAVK 357

Query: 705 -NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
             L   K   ++YVTD GQ  HF ++   AK+AG       R+D V FG+VLG+D+KKFK
Sbjct: 358 YRLQEMKADRVIYVTDAGQSEHFEMIFHAAKRAGWCE-GGARLDHVPFGLVLGDDKKKFK 416

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDK----NRHTELTPTELSEAQQAVAYGCIKYADLS 819
           TRSG+  KL +LLDE + RSL  L+++       T++   +L EA + + YGC+KYADL 
Sbjct: 417 TRSGEVTKLVDLLDEAVTRSLTHLRERMNTEGSTTQMAEGDLEEASRRIGYGCVKYADLR 476

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPS 871
            +R  DY FS+DKMLD +GNTAVYL+Y+Y RI SI   AG+  +D     PS
Sbjct: 477 QHRISDYQFSYDKMLDLKGNTAVYLMYSYARITSIKARAGVKLQDLANVLPS 528



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 15/195 (7%)

Query: 929  GLRRSLDKLKDK----NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
             + RSL  L+++       T++   +L EA + + YGC+KYADL  +R  DY FS+DKML
Sbjct: 432  AVTRSLTHLRERMNTEGSTTQMAEGDLEEASRRIGYGCVKYADLRQHRISDYQFSYDKML 491

Query: 985  DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            D +GNTAVYL+Y+Y RI SI   AG+  +DL   A   P S++H KE+ L   +L+  +V
Sbjct: 492  DLKGNTAVYLMYSYARITSIKARAGVKLQDL---ANVLP-SVQHPKEYQLVLHILKFPEV 547

Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVM 1104
            +  V   L  H +CE+LYD +  F++FY +C+ I          + + RL++ E  A VM
Sbjct: 548  VERVADTLLPHLICEFLYDTAEKFNDFYRDCHVIG-------DPLQSQRLVICEVVAAVM 600

Query: 1105 KKCFDILNIRTVHKM 1119
            KK   +L I  + K+
Sbjct: 601  KKGMSLLGITPLEKI 615



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 27/150 (18%)

Query: 18  VFTHAVQVAFPELGD-----KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK------ 66
           +F  A+  AFP + +     +   V +T++    K GD+QCN AMA+ KI KDK      
Sbjct: 33  LFEKAIAQAFPIVPESLEKSRWLVVQATSDA---KHGDYQCNSAMAIHKILKDKVVSHAL 89

Query: 67  ----GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK 122
                  K P D++  I   +           KV+ K E A PGF+N+FL   +  E   
Sbjct: 90  AGVADAPKAPRDVSARIVECIPKN--------KVLLKTEIAGPGFINIFLDPAFIAESFA 141

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            I+ NG QPP  ++   V+VDFSSPNIA++
Sbjct: 142 KILKNGPQPPA-SQPQEVVVDFSSPNIAKE 170


>gi|302755802|ref|XP_002961325.1| hypothetical protein SELMODRAFT_140217 [Selaginella moellendorffii]
 gi|300172264|gb|EFJ38864.1| hypothetical protein SELMODRAFT_140217 [Selaginella moellendorffii]
          Length = 595

 Score =  316 bits (809), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 175/407 (42%), Positives = 249/407 (61%), Gaps = 30/407 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK-GE 264
           ++R  LS +   + Q    E G+   +VA+        FGD+Q N+AM +    K K  E
Sbjct: 16  TIRQELSKIARESFQTTLGEWGNVEPAVAACANP---NFGDYQINNAMGIWSTIKGKETE 72

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            +NP +IAQSI          N      ++   VA PGF+NV LS VY  +++ +++++G
Sbjct: 73  FRNPREIAQSITR--------NFPQTGFVETTSVAGPGFINVKLSSVYIAKRLNELLLHG 124

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           +    P L  K R +VDFSSPNIAKEMHVGHLRSTIIGD ++ ++EY   +V+R NHVGD
Sbjct: 125 IDTWAPVLPVK-RAIVDFSSPNIAKEMHVGHLRSTIIGDCLANMIEYCKVEVLRRNHVGD 183

Query: 383 WGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           WGTQFGMLI +L + FP++       I DLQAFYKESK RFD DE FK +A Q VV LQ 
Sbjct: 184 WGTQFGMLIEYLFEMFPNWEDIGDQAIGDLQAFYKESKVRFDADEEFKAKAQQAVVKLQS 243

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            D  Y+ AW+++C++SR +FQ++YDRL V+L E+GESFY  ++   +  L  KG+LE  D
Sbjct: 244 GDAKYRAAWKILCNISRNEFQQVYDRLKVSLEEKGESFYNPYIPDAIQILRDKGILEESD 303

Query: 502 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           G  +++  D   IP+  +K DGGF Y ++DLAA+  R+  EK +WI+YVTD+GQ  HF +
Sbjct: 304 GATVIF-VDGHKIPLIAIKRDGGFNYASTDLAALWYRLNVEKVEWIIYVTDVGQHQHFDM 362

Query: 562 LEESTIIGDTISRLLEYLGHD-VVRLNHVGDWGTQFGMLIAHLQDKF 607
           L ++       ++  E+L  +   R  HVG     FG+++     +F
Sbjct: 363 LFKA-------AKRAEWLPKEGYPRTQHVG-----FGLVLGADGKRF 397



 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 154/339 (45%), Positives = 203/339 (59%), Gaps = 44/339 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGD ++ ++EY   +V+R NHVGDWGTQFGMLI +L + FP++       I DLQAF
Sbjct: 157 STIIGDCLANMIEYCKVEVLRRNHVGDWGTQFGMLIEYLFEMFPNWEDIGDQAIGDLQAF 216

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YKESK RFD DE FK +A Q VV LQ  D  Y+ AW+++C++SR +FQ++YDRL V+L E
Sbjct: 217 YKESKVRFDADEEFKAKAQQAVVKLQSGDAKYRAAWKILCNISRNEFQQVYDRLKVSLEE 276

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++   +  L  KG                                       
Sbjct: 277 KGESFYNPYIPDAIQILRDKGILEESDGATVIFVDGHKIPLIAIKRDGGFNYASTDLAAL 336

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKTRMDFVGFGVVLGEDRKK 761
              L++ K   I+YVTD+GQ  HF +L + AK+A  L      R   VGFG+VLG D K+
Sbjct: 337 WYRLNVEKVEWIIYVTDVGQHQHFDMLFKAAKRAEWLPKEGYPRTQHVGFGLVLGADGKR 396

Query: 762 FKTRSG-DTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH 820
           F+TR G   V+L +LLDE   RS   L ++ R  E +P +L  A ++V YG +KYADL +
Sbjct: 397 FRTRQGTGLVRLVDLLDEAKSRSKTALIERGRDDEWSPEDLDAAAESVGYGAVKYADLKN 456

Query: 821 NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           NR  +Y FSF++MLD RGNTAVYLLYAY RI SI R +G
Sbjct: 457 NRETNYTFSFEQMLDVRGNTAVYLLYAYARIRSIIRKSG 495



 Score =  147 bits (370), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 114/188 (60%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ R  E +P +L  A ++V YG +KYADL +NR  +Y FSF++MLD RGNTA
Sbjct: 418  RSKTALIERGRDDEWSPEDLDAAAESVGYGAVKYADLKNNRETNYTFSFEQMLDVRGNTA 477

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYAY RI SI R +G + ++L+   ++  + L H  E AL   L++ ++V+      
Sbjct: 478  VYLLYAYARIRSIIRKSGKSIDELK---ENGAIVLTHPDERALGLFLIQFSEVVEDAVTR 534

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LCEYLY++S  F+ FY +C       E       T RLLL EATA VMK+CF +L
Sbjct: 535  LLPNTLCEYLYNLSENFTRFYTSCKVNGSPEE-------TSRLLLCEATAIVMKQCFKLL 587

Query: 1112 NIRTVHKM 1119
             I  + ++
Sbjct: 588  GITPLERL 595



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 15/146 (10%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK-GE 68
           ++R  LS +   + Q    E G+   +VA+        FGD+Q N+AM +    K K  E
Sbjct: 16  TIRQELSKIARESFQTTLGEWGNVEPAVAACANP---NFGDYQINNAMGIWSTIKGKETE 72

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            +NP +IAQSI          N      ++    A PGF+NV LS VY  +++ +++++G
Sbjct: 73  FRNPREIAQSITR--------NFPQTGFVETTSVAGPGFINVKLSSVYIAKRLNELLLHG 124

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           +    P L  K R +VDFSSPNIA++
Sbjct: 125 IDTWAPVLPVK-RAIVDFSSPNIAKE 149


>gi|226491618|ref|NP_001148134.1| arginyl-tRNA synthetase [Zea mays]
 gi|194698640|gb|ACF83404.1| unknown [Zea mays]
 gi|195616022|gb|ACG29841.1| arginyl-tRNA synthetase [Zea mays]
          Length = 604

 Score =  316 bits (809), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 179/429 (41%), Positives = 256/429 (59%), Gaps = 31/429 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           SV+  LS +   ++Q   P++  +     S       KF D+QCN+AM L    K  G  
Sbjct: 22  SVKQQLSRLVLSSLQTTLPDVEVEPMVEVSA------KFADYQCNNAMGLWSKVKGSGTI 75

Query: 266 -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            KNP  I Q+IA  + S        + +I+   VA PGFVN+ LS  +  ++I+D++VNG
Sbjct: 76  FKNPNSIGQAIAKNLPS--------SDIIESASVAGPGFVNITLSNRWVAQRIQDMLVNG 127

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           ++   P L    R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+ E+    V+R NHVGD
Sbjct: 128 IKTWAPVLPVN-RTVVDFSSPNIAKEMHVGHLRSTIIGDTLARMFEFSNVVVLRRNHVGD 186

Query: 383 WGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           WGTQFGMLI +L +KFP++       I DLQ FYK SK RFD D  FK RA Q VV LQ 
Sbjct: 187 WGTQFGMLIEYLFEKFPNWQEIGCQAIGDLQIFYKASKHRFDSDPDFKARAQQGVVRLQG 246

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            +  Y++AW+ ICD+SR +F  +Y RLNV L E+GESFY  ++ Q++  L  KGL++  +
Sbjct: 247 GEDKYREAWKKICDISRSEFDLVYKRLNVVLEEKGESFYNPYIPQVLEELSNKGLIKESE 306

Query: 502 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           G ++++ +    IP+ +VKSDGGF Y ++DL A+  R+  E+A+WI+YVTD+GQ  HF +
Sbjct: 307 GARVIFIQGH-QIPLIVVKSDGGFNYASTDLTALWYRLNVEQAEWIIYVTDVGQQQHFDM 365

Query: 562 LEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 621
           +  +  +   +    E       + +HVG     FG+++     +F    T+S  +  L 
Sbjct: 366 VFSAAKMAGWLPDPSE---KKFPKTSHVG-----FGLVLGSDGKRFR---TRSTEVVRLV 414

Query: 622 AFYKESKKR 630
               E+K R
Sbjct: 415 ELLDEAKSR 423



 Score =  274 bits (701), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 154/351 (43%), Positives = 204/351 (58%), Gaps = 52/351 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++R+ E+    V+R NHVGDWGTQFGMLI +L +KFP++       I DLQ F
Sbjct: 160 STIIGDTLARMFEFSNVVVLRRNHVGDWGTQFGMLIEYLFEKFPNWQEIGCQAIGDLQIF 219

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK RFD D  FK RA Q VV LQ  +  Y++AW+ ICD+SR +F  +Y RLNV L E
Sbjct: 220 YKASKHRFDSDPDFKARAQQGVVRLQGGEDKYREAWKKICDISRSEFDLVYKRLNVVLEE 279

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++ Q++  L  KG                                       
Sbjct: 280 KGESFYNPYIPQVLEELSNKGLIKESEGARVIFIQGHQIPLIVVKSDGGFNYASTDLTAL 339

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF-----VGFGVVLGE 757
              L++ +   I+YVTD+GQ  HF ++   AK AG L P+ +   F     VGFG+VLG 
Sbjct: 340 WYRLNVEQAEWIIYVTDVGQQQHFDMVFSAAKMAGWL-PDPSEKKFPKTSHVGFGLVLGS 398

Query: 758 DRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           D K+F+TRS + V+L ELLDE   RS    L +L +  +  + T  EL +  +AV YG +
Sbjct: 399 DGKRFRTRSTEVVRLVELLDEAKSRSKSELLQRLTENGKIVDWTDEELEQTSEAVGYGAV 458

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADL +NR  +Y FSF++ML D+GNTAVYL YA+ RI SI R +  N E+
Sbjct: 459 KYADLKNNRLTNYTFSFEQMLSDKGNTAVYLQYAHARICSIIRKSNKNVEE 509



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 115/186 (61%), Gaps = 10/186 (5%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            L +L +  +  + T  EL +  +AV YG +KYADL +NR  +Y FSF++ML D+GNTAVY
Sbjct: 429  LQRLTENGKIVDWTDEELEQTSEAVGYGAVKYADLKNNRLTNYTFSFEQMLSDKGNTAVY 488

Query: 994  LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLC 1053
            L YA+ RI SI R +  N E+L++   S  +SL+H  E  L   L+R  +V+     +L 
Sbjct: 489  LQYAHARICSIIRKSNKNVEELKM---SGAISLDHPDERVLGLYLIRFAEVVEEACTNLL 545

Query: 1054 LHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
             + +CEYLY++S  F++FY NC  +    E       T RLLL +ATA VM++CF++L I
Sbjct: 546  PNVVCEYLYNLSEMFTKFYTNCQVVGSPEE-------TSRLLLCQATAVVMRQCFNLLGI 598

Query: 1114 RTVHKM 1119
              V+K+
Sbjct: 599  TPVYKL 604



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 18/146 (12%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           SV+  LS +   ++Q   P++  +     S       KF D+QCN+AM L    K  G  
Sbjct: 22  SVKQQLSRLVLSSLQTTLPDVEVEPMVEVSA------KFADYQCNNAMGLWSKVKGSGTI 75

Query: 70  -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            KNP  I Q+IA  + S        + +I+    A PGFVN+ LS  +  ++++D++VNG
Sbjct: 76  FKNPNSIGQAIAKNLPS--------SDIIESASVAGPGFVNITLSNRWVAQRIQDMLVNG 127

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           ++   P L    R +VDFSSPNIA++
Sbjct: 128 IKTWAPVLPVN-RTVVDFSSPNIAKE 152


>gi|221504188|gb|EEE29863.1| arginyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 607

 Score =  315 bits (808), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 160/330 (48%), Positives = 225/330 (68%), Gaps = 16/330 (4%)

Query: 241 VHKFGDFQCNDAMALCKIFKDKGEK----KNPFDIAQSIASVVTSE-----LATNPSLAK 291
           V KFGDFQCN AMAL   FK K ++    ++P +  + IA+ +  E     +  +P  A 
Sbjct: 31  VSKFGDFQCNSAMAL---FKQKSKEELGVQSPKEAGEKIAAQLKDESLFSNVQASPQ-AS 86

Query: 292 VIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG--VQPPTLNKKLRVLVDFSSPNIAKEM 349
           ++++ E    GFV V +S  +  + +K+I+     +Q P   KKLRV+VDFSSPN+AKEM
Sbjct: 87  LLNRDEPVLAGFVTVDISGAWLCKDLKEILKQKGHLQVPQAEKKLRVMVDFSSPNVAKEM 146

Query: 350 HVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 409
           HVGHLRSTIIG++I R+L + GH+V R+NH+GDWGTQFGMLI +L  +FPDY    P I+
Sbjct: 147 HVGHLRSTIIGESICRILAFHGHEVQRINHIGDWGTQFGMLIEYLHSQFPDYKANMPDIS 206

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL AFYK++K  FD DE FK R+ + VV LQ  D    ++W +ICDVSR++F+K+Y RL+
Sbjct: 207 DLNAFYKKAKAAFDADEDFKTRSREMVVKLQGGDEAALESWRLICDVSRKEFEKVYKRLD 266

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDT 529
           V+L ERGES+Y   + ++V  L  KG++ + DG K ++ +    +P+  VKSDGGF YD+
Sbjct: 267 VSLEERGESYYNAVLPKVVQELTDKGMVTVSDGAKCVFTK-VSEVPLMAVKSDGGFGYDS 325

Query: 530 SDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           +DLAA+R R+ E + DW++YVTDLGQ  HF
Sbjct: 326 TDLAAVRDRLVERRGDWLIYVTDLGQEEHF 355



 Score =  278 bits (712), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 218/374 (58%), Gaps = 64/374 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I R+L + GH+V R+NH+GDWGTQFGMLI +L  +FPDY    P I+DL AFY
Sbjct: 153 STIIGESICRILAFHGHEVQRINHIGDWGTQFGMLIEYLHSQFPDYKANMPDISDLNAFY 212

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++K  FD DE FK R+ + VV LQ  D    ++W +ICDVSR++F+K+Y RL+V+L ER
Sbjct: 213 KKAKAAFDADEDFKTRSREMVVKLQGGDEAALESWRLICDVSRKEFEKVYKRLDVSLEER 272

Query: 685 GESFYQKHMEQLVPYLEKKGNLS------------------------------------- 707
           GES+Y   + ++V  L  KG ++                                     
Sbjct: 273 GESYYNAVLPKVVQELTDKGMVTVSDGAKCVFTKVSEVPLMAVKSDGGFGYDSTDLAAVR 332

Query: 708 --LTKKLG--IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
             L ++ G  ++YVTDLGQ  HF  +   A++AG   P KTR+D +GFGVV G+D K+FK
Sbjct: 333 DRLVERRGDWLIYVTDLGQEEHFTKIFAAAEQAGWHLPPKTRLDHMGFGVVQGQDGKRFK 392

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRH--------------------TELTPTELSE 803
           TRSG+ VKL +LLDE   R+L +L+ +                       T +   E+  
Sbjct: 393 TRSGEVVKLVDLLDEAKARALKELRRRKEEEKEEEKRESGDGCNASPCTGTTVADEEMDN 452

Query: 804 AQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           A +A+ Y  +KY DL  NR+ DY FS+D+MLD +GNTAVY++YAY RI +I R A +   
Sbjct: 453 AAEAIGYSAVKYFDLKQNRHTDYKFSYDRMLDPKGNTAVYMMYAYARICAIFRKADV--- 509

Query: 864 DPPEPDPSQSEVED 877
           D    DP + ++E+
Sbjct: 510 DISTLDPEELKIEE 523



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 11/176 (6%)

Query: 944  TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIAS 1003
            T +   E+  A +A+ Y  +KY DL  NR+ DY FS+D+MLD +GNTAVY++YAY RI +
Sbjct: 443  TTVADEEMDNAAEAIGYSAVKYFDLKQNRHTDYKFSYDRMLDPKGNTAVYMMYAYARICA 502

Query: 1004 IARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYD 1063
            I R A ++   L        + +E   E  LA TL +  DVL  +  DL +H L EY+Y 
Sbjct: 503  IFRKADVDISTL----DPEELKIEEPAERKLAVTLAQFPDVLATILDDLHIHRLAEYMYK 558

Query: 1064 ISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            +S AF++FY  C  +    +         RLLL EAT KV++  F +L I  + ++
Sbjct: 559  VSGAFTDFYQACKVLGSPQQNT-------RLLLCEATRKVLQASFYLLGITPLERI 607



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 15/119 (12%)

Query: 45  VHKFGDFQCNDAMALCKIFKDKGEK----KNPFDIAQSIASVVTSE-----LATNPSLAK 95
           V KFGDFQCN AMAL   FK K ++    ++P +  + IA+ +  E     +  +P  A 
Sbjct: 31  VSKFGDFQCNSAMAL---FKQKSKEELGVQSPKEAGEKIAAQLKDESLFSNVQASPQ-AS 86

Query: 96  VIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG--VQPPTLNKKLRVLVDFSSPNIARK 152
           ++++ E    GFV V +S  +  + +K+I+     +Q P   KKLRV+VDFSSPN+A++
Sbjct: 87  LLNRDEPVLAGFVTVDISGAWLCKDLKEILKQKGHLQVPQAEKKLRVMVDFSSPNVAKE 145


>gi|255580290|ref|XP_002530974.1| arginyl-tRNA synthetase, putative [Ricinus communis]
 gi|223529450|gb|EEF31409.1| arginyl-tRNA synthetase, putative [Ricinus communis]
          Length = 615

 Score =  315 bits (807), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 170/395 (43%), Positives = 243/395 (61%), Gaps = 31/395 (7%)

Query: 172 AIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTA 231
            +A  E  Q  S+ +  +  G  KK              L+ +   +++   P   D   
Sbjct: 15  GLASPEPNQLCSAPAEEENMGNLKKQ-------------LAKLIAVSLRTTLPTQFDIDP 61

Query: 232 SVASTNEKYVHKFGDFQCNDAMAL-CKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLA 290
            VAS   K    FGD+QCN+AM L  K+       +NP  + Q+I          N   +
Sbjct: 62  LVASCRTK----FGDYQCNNAMGLFSKLRGTNSNYQNPVAVGQAIMR--------NLPFS 109

Query: 291 KVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKE 348
           K+I+   VA PGFVN+ LS  +  E I+ ++VNG++   P L+ K R +VDFSSPNIAKE
Sbjct: 110 KMIESSSVAGPGFVNIVLSNKWMAENIQKMLVNGIETWAPKLSIK-RAVVDFSSPNIAKE 168

Query: 349 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 407
           +HVGHLRSTIIGD+++R+LE+   +V+R NHVGDWGTQFGMLI  L +++P++       
Sbjct: 169 LHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEFLFERYPNFEDVNECA 228

Query: 408 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 467
           I +LQAFYK SK+RFD D  FK+RA + VV LQ  +P Y++AW  ICD+SRR+F  +Y R
Sbjct: 229 IDNLQAFYKASKQRFDIDFEFKERAQKAVVRLQGGEPKYRQAWAQICDISRREFDMVYQR 288

Query: 468 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTY 527
           L V L E+GESFY  ++  ++  L ++GL+E  +G ++++ E    IP+  VKSDGG+ Y
Sbjct: 289 LRVQLEEKGESFYNPYIPGVIEALTQQGLVEESEGARVIFIEGY-DIPLIAVKSDGGYNY 347

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
            ++DLAA+  R+ EEKA+WI+YVTD GQ  HF ++
Sbjct: 348 ASTDLAALWYRLNEEKAEWIIYVTDAGQNQHFEMV 382



 Score =  276 bits (705), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 150/345 (43%), Positives = 208/345 (60%), Gaps = 45/345 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGD+++R+LE+   +V+R NHVGDWGTQFGMLI  L +++P++       I +LQAF
Sbjct: 176 STIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEFLFERYPNFEDVNECAIDNLQAF 235

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK+RFD D  FK+RA + VV LQ  +P Y++AW  ICD+SRR+F  +Y RL V L E
Sbjct: 236 YKASKQRFDIDFEFKERAQKAVVRLQGGEPKYRQAWAQICDISRREFDMVYQRLRVQLEE 295

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++  ++  L ++G                                       
Sbjct: 296 KGESFYNPYIPGVIEALTQQGLVEESEGARVIFIEGYDIPLIAVKSDGGYNYASTDLAAL 355

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKT---RMDFVGFGVVLGEDR 759
              L+  K   I+YVTD GQ  HF ++ + AK+AG L        ++  VGFGV+ GED 
Sbjct: 356 WYRLNEEKAEWIIYVTDAGQNQHFEMVFKAAKRAGWLLSADNLYPKVTHVGFGVLKGEDG 415

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TRS + V+L +LLDE   RS   L ++ +  E T  EL +  +AV YG +KYADL 
Sbjct: 416 KRFRTRSTEVVRLVDLLDEAKMRSKTALIERGKAEEWTDDELEQTAEAVGYGAVKYADLK 475

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           +NR  DY F+FD+ML+D+GNTAVYLLYA+ RI SI R +G + E+
Sbjct: 476 NNRMTDYKFNFDQMLNDKGNTAVYLLYAHARICSIIRKSGRDIEE 520



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 113/188 (60%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E T  EL +  +AV YG +KYADL +NR  DY F+FD+ML+D+GNTA
Sbjct: 438  RSKTALIERGKAEEWTDDELEQTAEAVGYGAVKYADLKNNRMTDYKFNFDQMLNDKGNTA 497

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G + E+L+    +T + L+H  E +L   LL   + +     +
Sbjct: 498  VYLLYAHARICSIIRKSGRDIEELK---NTTTLVLDHADERSLGLHLLHFAETVEEACIN 554

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L    LCEYLY +S  F++FY NC  +    E         RLLL EATA VM+KCF +L
Sbjct: 555  LLPSVLCEYLYSLSEYFTKFYSNCQVVGSGEE-------RSRLLLCEATALVMRKCFFLL 607

Query: 1112 NIRTVHKM 1119
             I  V+++
Sbjct: 608  GIVPVYQI 615



 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 16/146 (10%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL-CKIFKDKGE 68
           +++  L+ +   +++   P   D    VAS   K    FGD+QCN+AM L  K+      
Sbjct: 36  NLKKQLAKLIAVSLRTTLPTQFDIDPLVASCRTK----FGDYQCNNAMGLFSKLRGTNSN 91

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            +NP  + Q+I          N   +K+I+    A PGFVN+ LS  +  E ++ ++VNG
Sbjct: 92  YQNPVAVGQAIMR--------NLPFSKMIESSSVAGPGFVNIVLSNKWMAENIQKMLVNG 143

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           ++   P L+ K R +VDFSSPNIA++
Sbjct: 144 IETWAPKLSIK-RAVVDFSSPNIAKE 168


>gi|449017880|dbj|BAM81282.1| arginine--tRNA ligase [Cyanidioschyzon merolae strain 10D]
          Length = 709

 Score =  315 bits (807), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 170/366 (46%), Positives = 231/366 (63%), Gaps = 31/366 (8%)

Query: 207 VRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKK 266
           +R  + +V +     A PE+ D     +S  E     FGDFQCN AM+L +  K K    
Sbjct: 110 LRRSVIEVLSKEYGDALPEVVDPMVVFSSRPE-----FGDFQCNVAMSLARQLKSK---- 160

Query: 267 NPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII----- 321
            P D+A+ +   +  ++A           +EVA PGFVN  LS  Y    I+ ++     
Sbjct: 161 -PRDVAERLRVGLEQKVA-----GMCATPLEVAGPGFVNFRLSDGYLASVIRQMMSDPRG 214

Query: 322 -VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
            +N  +PP L    R++VDFSSPNIAKEMHVGHLRSTIIGDT+ R+LEYLGH V+RLNHV
Sbjct: 215 KLNVPEPPKLQ---RIVVDFSSPNIAKEMHVGHLRSTIIGDTLCRVLEYLGHTVIRLNHV 271

Query: 381 GDWGTQFGMLIAHLQDKFPDYLT--KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLIA+L +  P+ LT  + P + DL AFYK++KKRFDED +F+  A   V  
Sbjct: 272 GDWGTQFGMLIAYLAEVAPEALTGERPPDLGDLVAFYKQAKKRFDEDPVFQNAARAQVTK 331

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ  D    +AW ++C++SRR+F+KIY  L+V LTERGESFY  ++  ++  LE+KGL++
Sbjct: 332 LQSGDEASLRAWRLLCELSRREFEKIYQLLDVQLTERGESFYNPYLPDVIERLERKGLVQ 391

Query: 499 LDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
           +D G   ++ E     D    P+ + KSDGG+ Y T+DLAAI  R++E++A  I+YVTD 
Sbjct: 392 VDQGALCVFLEGFKNRDGSPQPLIVRKSDGGYMYSTTDLAAILYRVQEDRAQRILYVTDA 451

Query: 554 GQGVHF 559
           GQ  HF
Sbjct: 452 GQATHF 457



 Score =  278 bits (711), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 152/348 (43%), Positives = 209/348 (60%), Gaps = 54/348 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT--KSPPIADLQA 622
           STIIGDT+ R+LEYLGH V+RLNHVGDWGTQFGMLIA+L +  P+ LT  + P + DL A
Sbjct: 247 STIIGDTLCRVLEYLGHTVIRLNHVGDWGTQFGMLIAYLAEVAPEALTGERPPDLGDLVA 306

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++KKRFDED +F+  A   V  LQ  D    +AW ++C++SRR+F+KIY  L+V LT
Sbjct: 307 FYKQAKKRFDEDPVFQNAARAQVTKLQSGDEASLRAWRLLCELSRREFEKIYQLLDVQLT 366

Query: 683 ERGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG----- 713
           ERGESFY  ++  ++  LE+KG                         L + K  G     
Sbjct: 367 ERGESFYNPYLPDVIERLERKGLVQVDQGALCVFLEGFKNRDGSPQPLIVRKSDGGYMYS 426

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + A++AG  +P +  ++ V FG+VL
Sbjct: 427 TTDLAAILYRVQEDRAQRILYVTDAGQATHFAQVFQVARRAGFFDPAEVSLEHVPFGLVL 486

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGL---RRSLD-KLKDKNRHTELTPTELSEAQQAVAYG 811
           G+D KKFKTRSGDTV+L +LL+  +   R  L+ ++ ++   TE +P  L  A +A+  G
Sbjct: 487 GDDGKKFKTRSGDTVRLMDLLERAIELARHDLEQRIAEQPGRTE-SPEYLERAARAIGIG 545

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
            +KYADL   R  DY FS++KML   GNTA Y++Y +TR++ IAR A 
Sbjct: 546 AVKYADLRTTRTADYRFSYEKMLSLNGNTAPYMMYVFTRVSGIARKAA 593



 Score =  112 bits (281), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 15/194 (7%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            ++ ++   TE +P  L  A +A+  G +KYADL   R  DY FS++KML   GNTA Y++
Sbjct: 521  RIAEQPGRTE-SPEYLERAARAIGIGAVKYADLRTTRTADYRFSYEKMLSLNGNTAPYMM 579

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEF----------ALAKTLLRMNDVL 1045
            Y +TR++ IAR A     D  V  Q    +   E++           ALA+ LLR   VL
Sbjct: 580  YVFTRVSGIARKAAGLPADAEVCMQELVANCASEQQLLLCVTEPAEGALARQLLRFPYVL 639

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
            + + R+L  H LCEYL+++S  F++FY++C  +  + +    +V   RL L   T  V++
Sbjct: 640  LDLERELMPHVLCEYLFELSQRFNQFYEHCPVLGAEDD----SVRHSRLALCALTGYVVE 695

Query: 1106 KCFDILNIRTVHKM 1119
                +L I  + ++
Sbjct: 696  SGLRLLGIEVLPRL 709



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 24/148 (16%)

Query: 11  VRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKK 70
           +R  + +V +     A PE+ D     +S  E     FGDFQCN AM+L +  K K    
Sbjct: 110 LRRSVIEVLSKEYGDALPEVVDPMVVFSSRPE-----FGDFQCNVAMSLARQLKSK---- 160

Query: 71  NPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII----- 125
            P D+A+ +   +  ++A           +E A PGFVN  LS  Y    ++ ++     
Sbjct: 161 -PRDVAERLRVGLEQKVA-----GMCATPLEVAGPGFVNFRLSDGYLASVIRQMMSDPRG 214

Query: 126 -VNGVQPPTLNKKLRVLVDFSSPNIARK 152
            +N  +PP L    R++VDFSSPNIA++
Sbjct: 215 KLNVPEPPKLQ---RIVVDFSSPNIAKE 239


>gi|237843883|ref|XP_002371239.1| arginyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211968903|gb|EEB04099.1| arginyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|221483811|gb|EEE22123.1| arginyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
          Length = 607

 Score =  315 bits (807), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 160/330 (48%), Positives = 225/330 (68%), Gaps = 16/330 (4%)

Query: 241 VHKFGDFQCNDAMALCKIFKDKGEK----KNPFDIAQSIASVVTSE-----LATNPSLAK 291
           V KFGDFQCN AMAL   FK K ++    ++P +  + IA+ +  E     +  +P  A 
Sbjct: 31  VSKFGDFQCNSAMAL---FKQKSKEELGVQSPKEAGEKIAAQLKDESLFSNVQASPQ-AS 86

Query: 292 VIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG--VQPPTLNKKLRVLVDFSSPNIAKEM 349
           ++++ E    GFV V +S  +  + +K+I+     +Q P   KKLRV+VDFSSPN+AKEM
Sbjct: 87  LLNRDEPVLAGFVTVDISGAWLCKDLKEILKQKGHLQVPHAEKKLRVMVDFSSPNVAKEM 146

Query: 350 HVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 409
           HVGHLRSTIIG++I R+L + GH+V R+NH+GDWGTQFGMLI +L  +FPDY    P I+
Sbjct: 147 HVGHLRSTIIGESICRILAFHGHEVQRINHIGDWGTQFGMLIEYLHSQFPDYKANMPDIS 206

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL AFYK++K  FD DE FK R+ + VV LQ  D    ++W +ICDVSR++F+K+Y RL+
Sbjct: 207 DLNAFYKKAKAAFDADEDFKTRSREMVVKLQGGDEAALESWRLICDVSRKEFEKVYKRLD 266

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDT 529
           V+L ERGES+Y   + ++V  L  KG++ + DG K ++ +    +P+  VKSDGGF YD+
Sbjct: 267 VSLEERGESYYNAVLPKVVQELTDKGMVTVSDGAKCVFTK-VSEVPLMAVKSDGGFGYDS 325

Query: 530 SDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           +DLAA+R R+ E + DW++YVTDLGQ  HF
Sbjct: 326 TDLAAVRDRLVERRGDWLIYVTDLGQEEHF 355



 Score =  279 bits (713), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 218/374 (58%), Gaps = 64/374 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I R+L + GH+V R+NH+GDWGTQFGMLI +L  +FPDY    P I+DL AFY
Sbjct: 153 STIIGESICRILAFHGHEVQRINHIGDWGTQFGMLIEYLHSQFPDYKANMPDISDLNAFY 212

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++K  FD DE FK R+ + VV LQ  D    ++W +ICDVSR++F+K+Y RL+V+L ER
Sbjct: 213 KKAKAAFDADEDFKTRSREMVVKLQGGDEAALESWRLICDVSRKEFEKVYKRLDVSLEER 272

Query: 685 GESFYQKHMEQLVPYLEKKGNLS------------------------------------- 707
           GES+Y   + ++V  L  KG ++                                     
Sbjct: 273 GESYYNAVLPKVVQELTDKGMVTVSDGAKCVFTKVSEVPLMAVKSDGGFGYDSTDLAAVR 332

Query: 708 --LTKKLG--IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
             L ++ G  ++YVTDLGQ  HF  +   A++AG   P KTR+D +GFGVV G+D K+FK
Sbjct: 333 DRLVERRGDWLIYVTDLGQEEHFTKIFAAAEQAGWHLPPKTRLDHMGFGVVQGQDGKRFK 392

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRH--------------------TELTPTELSE 803
           TRSG+ VKL +LLDE   R+L +L+ +                       T +   E+  
Sbjct: 393 TRSGEVVKLVDLLDEAKARALKELRRRKEEEKEEEKRESGDGCNASPCTGTTVADEEMDN 452

Query: 804 AQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           A +A+ Y  +KY DL  NR+ DY FS+D+MLD +GNTAVY++YAY RI +I R A +   
Sbjct: 453 AAEAIGYSAVKYFDLKQNRHTDYKFSYDRMLDPKGNTAVYMMYAYARICAIFRKADV--- 509

Query: 864 DPPEPDPSQSEVED 877
           D    DP + ++E+
Sbjct: 510 DISTLDPEELKIEE 523



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 11/176 (6%)

Query: 944  TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIAS 1003
            T +   E+  A +A+ Y  +KY DL  NR+ DY FS+D+MLD +GNTAVY++YAY RI +
Sbjct: 443  TTVADEEMDNAAEAIGYSAVKYFDLKQNRHTDYKFSYDRMLDPKGNTAVYMMYAYARICA 502

Query: 1004 IARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYD 1063
            I R A ++   L        + +E   E  LA TL +  DVL  +  DL +H L EY+Y 
Sbjct: 503  IFRKADVDISTL----DPEELKIEEPAERKLAVTLAQFPDVLATILDDLHIHRLAEYMYK 558

Query: 1064 ISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            +S AF++FY  C  +    +         RLLL EAT KV++  F +L I  + ++
Sbjct: 559  VSGAFTDFYQACKVLGSPQQNT-------RLLLCEATRKVLQASFYLLGITPLERI 607



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 15/119 (12%)

Query: 45  VHKFGDFQCNDAMALCKIFKDKGEK----KNPFDIAQSIASVVTSE-----LATNPSLAK 95
           V KFGDFQCN AMAL   FK K ++    ++P +  + IA+ +  E     +  +P  A 
Sbjct: 31  VSKFGDFQCNSAMAL---FKQKSKEELGVQSPKEAGEKIAAQLKDESLFSNVQASPQ-AS 86

Query: 96  VIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG--VQPPTLNKKLRVLVDFSSPNIARK 152
           ++++ E    GFV V +S  +  + +K+I+     +Q P   KKLRV+VDFSSPN+A++
Sbjct: 87  LLNRDEPVLAGFVTVDISGAWLCKDLKEILKQKGHLQVPHAEKKLRVMVDFSSPNVAKE 145


>gi|413949932|gb|AFW82581.1| hypothetical protein ZEAMMB73_640075, partial [Zea mays]
          Length = 512

 Score =  315 bits (807), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 179/429 (41%), Positives = 256/429 (59%), Gaps = 31/429 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           SV+  LS +   ++Q   P++  +     S       KF D+QCN+AM L    K  G  
Sbjct: 72  SVKQQLSRLVLSSLQTTLPDVEVEPMVEVSA------KFADYQCNNAMGLWSKVKGSGTI 125

Query: 266 -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            KNP  I Q+IA  + S        + +I+   VA PGFVN+ LS  +  ++I+D++VNG
Sbjct: 126 FKNPNSIGQAIAKNLPS--------SDIIESASVAGPGFVNITLSNRWVAQRIQDMLVNG 177

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           ++   P L    R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+ E+    V+R NHVGD
Sbjct: 178 IKTWAPVLPVN-RTVVDFSSPNIAKEMHVGHLRSTIIGDTLARMFEFSNVVVLRRNHVGD 236

Query: 383 WGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           WGTQFGMLI +L +KFP++       I DLQ FYK SK RFD D  FK RA Q VV LQ 
Sbjct: 237 WGTQFGMLIEYLFEKFPNWQEIGCQAIGDLQIFYKASKHRFDSDPDFKARAQQGVVRLQG 296

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            +  Y++AW+ ICD+SR +F  +Y RLNV L E+GESFY  ++ Q++  L  KGL++  +
Sbjct: 297 GEDKYREAWKKICDISRSEFDLVYKRLNVVLEEKGESFYNPYIPQVLEELSNKGLIKESE 356

Query: 502 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           G ++++ +    IP+ +VKSDGGF Y ++DL A+  R+  E+A+WI+YVTD+GQ  HF +
Sbjct: 357 GARVIFIQGH-QIPLIVVKSDGGFNYASTDLTALWYRLNVEQAEWIIYVTDVGQQQHFDM 415

Query: 562 LEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 621
           +  +  +   +    E       + +HVG     FG+++     +F    T+S  +  L 
Sbjct: 416 VFSAAKMAGWLPDPSE---KKFPKTSHVG-----FGLVLGSDGKRF---RTRSTEVVRLV 464

Query: 622 AFYKESKKR 630
               E+K R
Sbjct: 465 ELLDEAKSR 473



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 168/302 (55%), Gaps = 52/302 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++R+ E+    V+R NHVGDWGTQFGMLI +L +KFP++       I DLQ F
Sbjct: 210 STIIGDTLARMFEFSNVVVLRRNHVGDWGTQFGMLIEYLFEKFPNWQEIGCQAIGDLQIF 269

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK RFD D  FK RA Q VV LQ  +  Y++AW+ ICD+SR +F  +Y RLNV L E
Sbjct: 270 YKASKHRFDSDPDFKARAQQGVVRLQGGEDKYREAWKKICDISRSEFDLVYKRLNVVLEE 329

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++ Q++  L  KG                                       
Sbjct: 330 KGESFYNPYIPQVLEELSNKGLIKESEGARVIFIQGHQIPLIVVKSDGGFNYASTDLTAL 389

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF-----VGFGVVLGE 757
              L++ +   I+YVTD+GQ  HF ++   AK AG L P+ +   F     VGFG+VLG 
Sbjct: 390 WYRLNVEQAEWIIYVTDVGQQQHFDMVFSAAKMAGWL-PDPSEKKFPKTSHVGFGLVLGS 448

Query: 758 DRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           D K+F+TRS + V+L ELLDE   RS    L +L +  +  + T  EL +  +AV YG +
Sbjct: 449 DGKRFRTRSTEVVRLVELLDEAKSRSKSELLQRLTENGKIVDWTDEELEQTSEAVGYGAV 508

Query: 814 KY 815
           KY
Sbjct: 509 KY 510



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 18/146 (12%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           SV+  LS +   ++Q   P++  +     S       KF D+QCN+AM L    K  G  
Sbjct: 72  SVKQQLSRLVLSSLQTTLPDVEVEPMVEVSA------KFADYQCNNAMGLWSKVKGSGTI 125

Query: 70  -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            KNP  I Q+IA  + S        + +I+    A PGFVN+ LS  +  ++++D++VNG
Sbjct: 126 FKNPNSIGQAIAKNLPS--------SDIIESASVAGPGFVNITLSNRWVAQRIQDMLVNG 177

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           ++   P L    R +VDFSSPNIA++
Sbjct: 178 IKTWAPVLPVN-RTVVDFSSPNIAKE 202


>gi|384248188|gb|EIE21673.1| arginyl-tRNA synthetase [Coccomyxa subellipsoidea C-169]
          Length = 596

 Score =  315 bits (806), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 173/388 (44%), Positives = 245/388 (63%), Gaps = 37/388 (9%)

Query: 182 ISSSSSSQTKG--TAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEK 239
           ++S++ +QT G  T+    VP     SVR  L+ VF+ A++ AFP + D   +VA+TN +
Sbjct: 1   MASAAPAQTLGQFTSTAKRVP-----SVRTDLAGVFSTALRTAFPNV-DIQPAVAATNNR 54

Query: 240 YVHKFGDFQCNDAMALCKIFKDK-GEKKNPFDIAQSIASVV--TSELATNPSLAKVIDKI 296
                GD+QCN+AMAL    K K G  KNP ++A +I + +  T+ +   P+LA      
Sbjct: 55  ---DHGDYQCNNAMALFGRMKGKEGAPKNPREVATAILNALPDTTAIDGTPTLAG----- 106

Query: 297 EVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
               PGF+N+ LS  +  E+I+ ++           K R +VDFSSPN+AKEMHVGHLRS
Sbjct: 107 ----PGFINIKLSSAWLSERIQILV-----------KQRAVVDFSSPNVAKEMHVGHLRS 151

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL--TKSPPIADLQAF 414
           TIIGDTI+R LE+ G D +R+NHVGDWGTQFGMLI H+ +  P  L  T +  ++DLQ  
Sbjct: 152 TIIGDTIARTLEFCGVDTLRINHVGDWGTQFGMLIQHIAETRPGGLQGTTTEEVSDLQTL 211

Query: 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 474
           YK SK RFD +E FK RA + V  LQ  DP++ + W+ IC+ SR +F  IY RL+V +  
Sbjct: 212 YKASKARFDAEEDFKARAREAVTRLQSGDPEFLETWKRICEASRNEFDAIYHRLDVHILW 271

Query: 475 RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           RGES+Y   +  LV  L ++G+ E  +G K++  E   + P+ I KSDGG+ Y T+D+A 
Sbjct: 272 RGESWYNPRLTPLVEELIERGIAEESEGAKVITVEGLKT-PLMIRKSDGGYGYGTTDMAT 330

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           + QRI +EKA+W++YVTD GQ  HF+L+
Sbjct: 331 LAQRIHDEKAEWLIYVTDEGQSGHFKLV 358



 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 147/343 (42%), Positives = 197/343 (57%), Gaps = 51/343 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL--TKSPPIADLQA 622
           STIIGDTI+R LE+ G D +R+NHVGDWGTQFGMLI H+ +  P  L  T +  ++DLQ 
Sbjct: 151 STIIGDTIARTLEFCGVDTLRINHVGDWGTQFGMLIQHIAETRPGGLQGTTTEEVSDLQT 210

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
            YK SK RFD +E FK RA + V  LQ  DP++ + W+ IC+ SR +F  IY RL+V + 
Sbjct: 211 LYKASKARFDAEEDFKARAREAVTRLQSGDPEFLETWKRICEASRNEFDAIYHRLDVHIL 270

Query: 683 ERGESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG----------- 713
            RGES+Y   +  LV  L ++G                   L + K  G           
Sbjct: 271 WRGESWYNPRLTPLVEELIERGIAEESEGAKVITVEGLKTPLMIRKSDGGYGYGTTDMAT 330

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNP-NKTRMDFVGFGVVLGEDRK 760
                       ++YVTD GQ  HF+L+    K+AGI+   N  R+D VGFG+VLG+D K
Sbjct: 331 LAQRIHDEKAEWLIYVTDEGQSGHFKLVFGAGKRAGIIPAKNPPRIDHVGFGLVLGQDGK 390

Query: 761 KFKTR-SGDTVKLSELLDEGLRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCI 813
           + +TR SG  V+L ELLDE   R    +K++   T      EL+  E+      + YG +
Sbjct: 391 RIRTRDSGAAVRLVELLDEAKARCAASIKERQETTIERGGEELSAEEMENISSVMGYGAV 450

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           KYADL +NR  +Y F+FD+MLD +GNTAVY+LYA+ RIA I R
Sbjct: 451 KYADLKNNRATNYKFNFDEMLDLKGNTAVYMLYAHARIAGIIR 493



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 109/175 (62%), Gaps = 10/175 (5%)

Query: 945  ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 1004
            EL+  E+      + YG +KYADL +NR  +Y F+FD+MLD +GNTAVY+LYA+ RIA I
Sbjct: 432  ELSAEEMENISSVMGYGAVKYADLKNNRATNYKFNFDEMLDLKGNTAVYMLYAHARIAGI 491

Query: 1005 ARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDI 1064
             R +   ++D++  AQ+  +SL+H  E ALA  ++R  ++L     +L  + + EY+Y++
Sbjct: 492  IRKS---NKDIKEVAQTAHISLDHASERALALHIVRFTEMLEDTLVELAPNRITEYVYEL 548

Query: 1065 STAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            S  F+ FY  C  + +  E         RLLL EATA +M++CF +L I+ ++++
Sbjct: 549  SNYFNTFYVGCKVLGEKEEDS-------RLLLCEATAMIMRQCFQLLGIKPLYRI 596



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 29/167 (17%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK-GE 68
           SVR  L+ VF+ A++ AFP + D   +VA+TN +     GD+QCN+AMAL    K K G 
Sbjct: 22  SVRTDLAGVFSTALRTAFPNV-DIQPAVAATNNR---DHGDYQCNNAMALFGRMKGKEGA 77

Query: 69  KKNPFDIAQSIASVV--TSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
            KNP ++A +I + +  T+ +   P+L         A PGF+N+ LS  +  E+++ ++ 
Sbjct: 78  PKNPREVATAILNALPDTTAIDGTPTL---------AGPGFINIKLSSAWLSERIQILV- 127

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAI 173
                     K R +VDFSSPN+A++      HL S I    I++ +
Sbjct: 128 ----------KQRAVVDFSSPNVAKE--MHVGHLRSTIIGDTIARTL 162


>gi|428223671|ref|YP_007107768.1| arginyl-tRNA synthetase [Geitlerinema sp. PCC 7407]
 gi|427983572|gb|AFY64716.1| arginyl-tRNA synthetase [Geitlerinema sp. PCC 7407]
          Length = 585

 Score =  314 bits (804), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 175/365 (47%), Positives = 233/365 (63%), Gaps = 29/365 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPE-LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           S  D L   F+ A+  AF E  G+    +   +     KFGDFQ N A+AL K  K    
Sbjct: 3   STLDQLKARFSQALVKAFGEQYGEADPMLVPASNP---KFGDFQSNAALALTKQLK---- 55

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
            + P  IAQ I          N  +    +  E+A PGF+N+ L + Y   ++  ++ + 
Sbjct: 56  -QAPQAIAQQIIQ--------NLEIDDYCETPEIAGPGFINLRLKQEYLVSRLHRMLASD 106

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GV+P  + +  RV+VDFSSPNIAKEMHVGHLR+TIIGD I+R+LE+ GHDV+RLNHVG
Sbjct: 107 RLGVEP--VKRPQRVIVDFSSPNIAKEMHVGHLRTTIIGDAIARVLEFQGHDVLRLNHVG 164

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           DWGTQFGMLI HL++  P  L  S  I   DL AFY+E+K+RFDEDE FK+R+ + VV L
Sbjct: 165 DWGTQFGMLITHLREACPAALQDSDAIDLGDLVAFYREAKQRFDEDEDFKERSRKAVVEL 224

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  DP+ +KAW+++CD SRR+FQKIYDRL++TLTERGESFY   +  +V  L   GLL  
Sbjct: 225 QSGDPEARKAWQILCDQSRREFQKIYDRLDITLTERGESFYNPLLADVVKDLATTGLLVE 284

Query: 500 DDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLG 554
           D G + ++      +D   +P+ I KSDGG+ Y T+DLAAIR RI+++ A+ I+YV D G
Sbjct: 285 DQGAQCVFLDGFTNKDGDPLPLIIQKSDGGYNYATTDLAAIRYRIQQDGAERIIYVVDAG 344

Query: 555 QGVHF 559
           Q  HF
Sbjct: 345 QSNHF 349



 Score =  285 bits (728), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 160/348 (45%), Positives = 206/348 (59%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           +TIIGD I+R+LE+ GHDV+RLNHVGDWGTQFGMLI HL++  P  L  S  I   DL A
Sbjct: 139 TTIIGDAIARVLEFQGHDVLRLNHVGDWGTQFGMLITHLREACPAALQDSDAIDLGDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+K+RFDEDE FK+R+ + VV LQ  DP+ +KAW+++CD SRR+FQKIYDRL++TLT
Sbjct: 199 FYREAKQRFDEDEDFKERSRKAVVELQSGDPEARKAWQILCDQSRREFQKIYDRLDITLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L   G L              T K G                 
Sbjct: 259 ERGESFYNPLLADVVKDLATTGLLVEDQGAQCVFLDGFTNKDGDPLPLIIQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YV D GQ  HF  + + A++AG + P       V FGVV 
Sbjct: 319 TTDLAAIRYRIQQDGAERIIYVVDAGQSNHFAQVFQVARRAGWV-PETVEPIHVPFGVVR 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT--ELTPTELSEAQQAVAYGCI 813
           GED KKFKTRSG+TV+L +LLDE + R+   L  + +    + +P  +    + V    +
Sbjct: 378 GEDGKKFKTRSGETVRLKDLLDEAVTRARTDLSTRVQEEGRDESPEFIGHVAETVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  DYVFS+DKML  +GNTA Y+LYAY RI  I+R   I+
Sbjct: 438 KYADLSQNRTSDYVFSYDKMLALQGNTAPYMLYAYVRIQGISRKGQID 485



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 68/173 (39%), Positives = 100/173 (57%), Gaps = 8/173 (4%)

Query: 947  TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006
            +P  +    + V    +KYADLS NR  DYVFS+DKML  +GNTA Y+LYAY RI  I+R
Sbjct: 421  SPEFIGHVAETVGISAVKYADLSQNRTSDYVFSYDKMLALQGNTAPYMLYAYVRIQGISR 480

Query: 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST 1066
               I   D    A   P+ L+ E E  LAK LL+++ +L  V+ +L  + LC+YL+++S 
Sbjct: 481  KGQI---DFTQIANDVPIDLQDESELTLAKHLLQLDQILAAVSVELLPNRLCQYLFELSQ 537

Query: 1067 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             F++FYD C  ++ D   +     T RL L + TA+ +K    +L I  + +M
Sbjct: 538  KFNQFYDRCPVLQADEPQR-----TSRLALCDLTARTLKLGLSLLGIPVLERM 585



 Score = 59.7 bits (143), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 28/176 (15%)

Query: 10  SVRDYLSDVFTHAVQVAFPE-LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           S  D L   F+ A+  AF E  G+    +   +     KFGDFQ N A+AL K  K    
Sbjct: 3   STLDQLKARFSQALVKAFGEQYGEADPMLVPASNP---KFGDFQSNAALALTKQLK---- 55

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
            + P  IAQ I          N  +    +  E A PGF+N+ L + Y   ++  ++ + 
Sbjct: 56  -QAPQAIAQQIIQ--------NLEIDDYCETPEIAGPGFINLRLKQEYLVSRLHRMLASD 106

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQG 181
             GV+P  + +  RV+VDFSSPNIA++      HL + I    I  AIA   + QG
Sbjct: 107 RLGVEP--VKRPQRVIVDFSSPNIAKE--MHVGHLRTTI----IGDAIARVLEFQG 154


>gi|356534732|ref|XP_003535906.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Glycine max]
          Length = 651

 Score =  314 bits (804), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 197/483 (40%), Positives = 278/483 (57%), Gaps = 38/483 (7%)

Query: 158 PHLPSQIHDIL--ISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVF 215
           P LPS   D+L   S   A    K   SS +  Q+  TA    + + +  SV+  L+ +F
Sbjct: 19  PSLPSSRSDLLKVASHRFALSATKTQQSSVTKPQSTSTAI---IEIDNPASVKRQLAQLF 75

Query: 216 THAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQS 274
             +++   P+       V +   K   KFGD+QCN+AM +    K K    + P  I Q+
Sbjct: 76  DLSLRETVPDEPHVVPLVDACAVKGGAKFGDYQCNNAMGIWSRMKGKQTGFRGPPAIGQA 135

Query: 275 IASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNK 332
           I +        N   +++ID   VA PGFVNV LS+ +  E ++ ++++G+    P L  
Sbjct: 136 IIN--------NLPPSEMIDSCSVAGPGFVNVVLSKKWIAESLRRMLIDGINSWAPRLPV 187

Query: 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHD-VVRLNHVGDWGTQFGMLI 391
           K R L+DFSSPNIAKEMHVGHLRSTIIGDT++R+LE+   + V+R NHVGDWGTQFGMLI
Sbjct: 188 K-RALIDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSHVECVIRRNHVGDWGTQFGMLI 246

Query: 392 AHLQDKFPDYLTKSPP-IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAW 450
            +L +KFP+    S   I DLQAFYK SK RFD D  FK RA Q VV+LQ  +  Y KAW
Sbjct: 247 TYLFEKFPNPDNVSEADIGDLQAFYKASKLRFDSDPEFKLRAQQAVVSLQSGEIKYHKAW 306

Query: 451 EMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED 510
           + IC+VSR +F K+Y  L + L ERGESFY  ++  ++  L+  GL+E  DG ++++ E 
Sbjct: 307 QQICEVSRAEFDKVYQCLGIQLEERGESFYNPYIPGVLEKLDNLGLIEESDGARVIYVEG 366

Query: 511 RGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGD 570
              IP+  VK DGG+ Y T+DLA++  R+ EEK +WIVYVTD+GQ  HF +L ++     
Sbjct: 367 V-DIPLIAVKRDGGYNYFTTDLASLWYRLNEEKLEWIVYVTDIGQQQHFDMLFKAY---- 421

Query: 571 TISRLLEYLGHD---VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 627
              R   +L  D     +  H+G     FG+++     +F    T+S  +  L     E+
Sbjct: 422 ---RRAGWLPKDENAYPKCTHIG-----FGLVLGEDGKRF---RTRSSEVVRLVDLLDEA 470

Query: 628 KKR 630
           K+R
Sbjct: 471 KRR 473



 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 154/349 (44%), Positives = 208/349 (59%), Gaps = 52/349 (14%)

Query: 565 STIIGDTISRLLEYLGHD-VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP-IADLQA 622
           STIIGDT++R+LE+   + V+R NHVGDWGTQFGMLI +L +KFP+    S   I DLQA
Sbjct: 210 STIIGDTLARMLEFSHVECVIRRNHVGDWGTQFGMLITYLFEKFPNPDNVSEADIGDLQA 269

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK SK RFD D  FK RA Q VV+LQ  +  Y KAW+ IC+VSR +F K+Y  L + L 
Sbjct: 270 FYKASKLRFDSDPEFKLRAQQAVVSLQSGEIKYHKAWQQICEVSRAEFDKVYQCLGIQLE 329

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSL---------------------TKKLG-------- 713
           ERGESFY  ++  +   LEK  NL L                      K+ G        
Sbjct: 330 ERGESFYNPYIPGV---LEKLDNLGLIEESDGARVIYVEGVDIPLIAVKRDGGYNYFTTD 386

Query: 714 ---------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKT---RMDFVGFGVVL 755
                          IVYVTD+GQ  HF +L +  ++AG L  ++    +   +GFG+VL
Sbjct: 387 LASLWYRLNEEKLEWIVYVTDIGQQQHFDMLFKAYRRAGWLPKDENAYPKCTHIGFGLVL 446

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           GED K+F+TRS + V+L +LLDE  RR    + +++   + +  E+ +  +AV YG +KY
Sbjct: 447 GEDGKRFRTRSSEVVRLVDLLDEAKRRCKIAILERDTTKDWSEEEIEKTSEAVGYGAVKY 506

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           ADL  NR  +Y F+FD+ML+D+GNTAVYLLYA+ RI SI R +G + E+
Sbjct: 507 ADLKINRLTNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEE 555



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 115/190 (60%), Gaps = 11/190 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            RR    + +++   + +  E+ +  +AV YG +KYADL  NR  +Y F+FD+ML+D+GNT
Sbjct: 472  RRCKIAILERDTTKDWSEEEIEKTSEAVGYGAVKYADLKINRLTNYTFNFDQMLNDKGNT 531

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            AVYLLYA+ RI SI R +G + E+++   ++  + L+HE E AL   LL+  +V      
Sbjct: 532  AVYLLYAHARICSIIRKSGKDIEEVK---RNGKIVLDHEDERALGLHLLQFPEVFEEACT 588

Query: 1051 DLCLHHLCEYLYDISTAFS-EFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
            +L  + LCEYLY+++  F+ +FY NC  +    E       T RLLL EAT  VM+ CF 
Sbjct: 589  NLLPNFLCEYLYNLAEIFTKKFYANCQVVGSPEE-------TSRLLLCEATVTVMRHCFY 641

Query: 1110 ILNIRTVHKM 1119
            +L I  V+++
Sbjct: 642  LLGIEHVYRL 651



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 12/153 (7%)

Query: 3   VPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKI 62
           + + +  SV+  L+ +F  +++   P+       V +   K   KFGD+QCN+AM +   
Sbjct: 59  IEIDNPASVKRQLAQLFDLSLRETVPDEPHVVPLVDACAVKGGAKFGDYQCNNAMGIWSR 118

Query: 63  FKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
            K K    + P  I Q+I +        N   +++ID    A PGFVNV LS+ +  E +
Sbjct: 119 MKGKQTGFRGPPAIGQAIIN--------NLPPSEMIDSCSVAGPGFVNVVLSKKWIAESL 170

Query: 122 KDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           + ++++G+    P L  K R L+DFSSPNIA++
Sbjct: 171 RRMLIDGINSWAPRLPVK-RALIDFSSPNIAKE 202


>gi|413949931|gb|AFW82580.1| hypothetical protein ZEAMMB73_640075 [Zea mays]
          Length = 434

 Score =  313 bits (801), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 166/361 (45%), Positives = 231/361 (63%), Gaps = 20/361 (5%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           SV+  LS +   ++Q   P++  +     S       KF D+QCN+AM L    K  G  
Sbjct: 72  SVKQQLSRLVLSSLQTTLPDVEVEPMVEVSA------KFADYQCNNAMGLWSKVKGSGTI 125

Query: 266 -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            KNP  I Q+IA  + S        + +I+   VA PGFVN+ LS  +  ++I+D++VNG
Sbjct: 126 FKNPNSIGQAIAKNLPS--------SDIIESASVAGPGFVNITLSNRWVAQRIQDMLVNG 177

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           ++   P L    R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+ E+    V+R NHVGD
Sbjct: 178 IKTWAPVLPVN-RTVVDFSSPNIAKEMHVGHLRSTIIGDTLARMFEFSNVVVLRRNHVGD 236

Query: 383 WGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           WGTQFGMLI +L +KFP++       I DLQ FYK SK RFD D  FK RA Q VV LQ 
Sbjct: 237 WGTQFGMLIEYLFEKFPNWQEIGCQAIGDLQIFYKASKHRFDSDPDFKARAQQGVVRLQG 296

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            +  Y++AW+ ICD+SR +F  +Y RLNV L E+GESFY  ++ Q++  L  KGL++  +
Sbjct: 297 GEDKYREAWKKICDISRSEFDLVYKRLNVVLEEKGESFYNPYIPQVLEELSNKGLIKESE 356

Query: 502 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           G ++++ +    IP+ +VKSDGGF Y ++DL A+  R+  E+A+WI+YVTD+GQ  HF +
Sbjct: 357 GARVIFIQGH-QIPLIVVKSDGGFNYASTDLTALWYRLNVEQAEWIIYVTDVGQQQHFDM 415

Query: 562 L 562
           +
Sbjct: 416 V 416



 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 76/154 (49%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++R+ E+    V+R NHVGDWGTQFGMLI +L +KFP++       I DLQ F
Sbjct: 210 STIIGDTLARMFEFSNVVVLRRNHVGDWGTQFGMLIEYLFEKFPNWQEIGCQAIGDLQIF 269

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK RFD D  FK RA Q VV LQ  +  Y++AW+ ICD+SR +F  +Y RLNV L E
Sbjct: 270 YKASKHRFDSDPDFKARAQQGVVRLQGGEDKYREAWKKICDISRSEFDLVYKRLNVVLEE 329

Query: 684 RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV 717
           +GESFY  ++ Q++  L  KG +  ++   ++++
Sbjct: 330 KGESFYNPYIPQVLEELSNKGLIKESEGARVIFI 363



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 18/146 (12%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           SV+  LS +   ++Q   P++  +     S       KF D+QCN+AM L    K  G  
Sbjct: 72  SVKQQLSRLVLSSLQTTLPDVEVEPMVEVSA------KFADYQCNNAMGLWSKVKGSGTI 125

Query: 70  -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            KNP  I Q+IA  + S        + +I+    A PGFVN+ LS  +  ++++D++VNG
Sbjct: 126 FKNPNSIGQAIAKNLPS--------SDIIESASVAGPGFVNITLSNRWVAQRIQDMLVNG 177

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           ++   P L    R +VDFSSPNIA++
Sbjct: 178 IKTWAPVLPVN-RTVVDFSSPNIAKE 202


>gi|297621921|ref|YP_003710058.1| Arginyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297377222|gb|ADI39052.1| Arginyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|337294180|emb|CCB92164.1| Arginyl-tRNA synthetase [Waddlia chondrophila 2032/99]
          Length = 576

 Score =  313 bits (801), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 173/405 (42%), Positives = 252/405 (62%), Gaps = 34/405 (8%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           L  +F  A   AFP+L +K+  +     K   KFG +QCN AM L K          P +
Sbjct: 5   LIQIFYSAFISAFPQLKEKSVEIDIAQSKQ-EKFGHYQCNTAMRLTKQLH-----MPPRE 58

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTL 330
           IAQ I   V             I+K+E+A PGF+N+FLS  Y  ++++ +  +      L
Sbjct: 59  IAQRIVESVDK--------GDAIEKLEIAGPGFINIFLSPAYIEKKVQTMAASPRLDIAL 110

Query: 331 NKKL-RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
            +K  +V+V+FSSPN AKE+HVGHLRSTIIGD ++R+ E+LGHDV+RLNHVGDWGT FGM
Sbjct: 111 PEKTEKVIVEFSSPNTAKELHVGHLRSTIIGDCLARVFEFLGHDVLRLNHVGDWGTAFGM 170

Query: 390 LIAHLQDKFPDYLT--KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           LIA+L+   P+ LT  +   +  L ++YK SKK+FDED  FKK +   VV+LQ  + D  
Sbjct: 171 LIAYLKLSHPEILTGEEETDLPHLVSWYKASKKQFDEDPGFKKISQLEVVSLQGGESDSL 230

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW 507
           KAWE+IC++SRR +Q+IY+ L+V + ERGES+Y   + +L+  L++K L+E+ +G K ++
Sbjct: 231 KAWEIICEISRRSYQEIYNLLDVAIEERGESYYNPVLPELIEELDQKELIEISEGAKCIF 290

Query: 508 -----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
                  +   +P+ + KSDGGF YDT+D+AA++QR++EEKAD I+ VTD GQ +HF+L+
Sbjct: 291 IPEFCNREGSPMPLMVQKSDGGFGYDTTDMAAMKQRVQEEKADRIIIVTDAGQALHFKLV 350

Query: 563 EESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
             +++          YL  D VR +HV      FG+++     KF
Sbjct: 351 YAASVKAG-------YLDPDKVRFDHV-----TFGLVLGADGKKF 383



 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/344 (40%), Positives = 204/344 (59%), Gaps = 51/344 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT--KSPPIADLQA 622
           STIIGD ++R+ E+LGHDV+RLNHVGDWGT FGMLIA+L+   P+ LT  +   +  L +
Sbjct: 137 STIIGDCLARVFEFLGHDVLRLNHVGDWGTAFGMLIAYLKLSHPEILTGEEETDLPHLVS 196

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           +YK SKK+FDED  FKK +   VV+LQ  + D  KAWE+IC++SRR +Q+IY+ L+V + 
Sbjct: 197 WYKASKKQFDEDPGFKKISQLEVVSLQGGESDSLKAWEIICEISRRSYQEIYNLLDVAIE 256

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSLT--------------------------------- 709
           ERGES+Y   + +L+  L++K  + ++                                 
Sbjct: 257 ERGESYYNPVLPELIEELDQKELIEISEGAKCIFIPEFCNREGSPMPLMVQKSDGGFGYD 316

Query: 710 --------------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                         K   I+ VTD GQ +HF+L+   + KAG L+P+K R D V FG+VL
Sbjct: 317 TTDMAAMKQRVQEEKADRIIIVTDAGQALHFKLVYAASVKAGYLDPDKVRFDHVTFGLVL 376

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           G D KKF+TRSG+  +L +L+   + ++ + + ++N   ++   +  +  +A+  G IKY
Sbjct: 377 GADGKKFRTRSGEVERLIDLIYTAIDKAREIMAERN--PDMPQEQREKIARALGIGAIKY 434

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           ADLS +R  DY FS+D+ML   GNTA +L+YAY RIA I R  G
Sbjct: 435 ADLSCHRTGDYTFSYDRMLRFEGNTAAFLMYAYVRIAGIKRKIG 478



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 108/189 (57%), Gaps = 14/189 (7%)

Query: 933  SLDKLKD--KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            ++DK ++    R+ ++   +  +  +A+  G IKYADLS +R  DY FS+D+ML   GNT
Sbjct: 400  AIDKAREIMAERNPDMPQEQREKIARALGIGAIKYADLSCHRTGDYTFSYDRMLRFEGNT 459

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A +L+YAY RIA I R  G + + L+ A     +SL+H  E AL   L + N+ L  V  
Sbjct: 460  AAFLMYAYVRIAGIKRKIGADIDALQAA-----ISLKHPSEMALGLHLAQFNEALQQVAE 514

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
            DL  + L +YLY ++  F+ FY +C       EG  +     RLLL EATA+++K+   +
Sbjct: 515  DLLPNRLSDYLYTLAEKFNAFYRDC-----QVEGAPE--QNSRLLLCEATARILKQGLHL 567

Query: 1111 LNIRTVHKM 1119
            L + TV KM
Sbjct: 568  LGVETVEKM 576



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 15/139 (10%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           L  +F  A   AFP+L +K+  +     K   KFG +QCN AM L K          P +
Sbjct: 5   LIQIFYSAFISAFPQLKEKSVEIDIAQSKQ-EKFGHYQCNTAMRLTKQLH-----MPPRE 58

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTL 134
           IAQ I   V             I+K+E A PGF+N+FLS  Y  ++++ +  +      L
Sbjct: 59  IAQRIVESVDK--------GDAIEKLEIAGPGFINIFLSPAYIEKKVQTMAASPRLDIAL 110

Query: 135 NKKL-RVLVDFSSPNIARK 152
            +K  +V+V+FSSPN A++
Sbjct: 111 PEKTEKVIVEFSSPNTAKE 129


>gi|325188174|emb|CCA22714.1| arginyltRNA synthetase putative [Albugo laibachii Nc14]
          Length = 803

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 173/419 (41%), Positives = 247/419 (58%), Gaps = 23/419 (5%)

Query: 214 VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK-KNPFDIA 272
           +F  A+  AFP L    A V  T  K   +FGD+QCN AM++    K      K+P D+A
Sbjct: 225 LFQKAIDSAFPGLHPAVAVVDVTRTKNA-QFGDYQCNSAMSIFTAMKGTPNALKSPRDVA 283

Query: 273 QSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNK 332
            +I + +      NP L     ++ VA  GF+N  L   +   ++  ++ +G Q      
Sbjct: 284 NAIINAMKQ--IENPVLQS---ELTVAGAGFINARLEPSFLSARLVSLLKHGAQASPETN 338

Query: 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 392
           +++V+VDFSSPNIAK+MHVGHLRSTIIGD I R+LE+ G+DV R+NHVGDWGTQFGMLI 
Sbjct: 339 RIKVVVDFSSPNIAKDMHVGHLRSTIIGDAICRILEFQGYDVARINHVGDWGTQFGMLIC 398

Query: 393 HLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEM 452
           HL D +P + ++ P + DL   YK +K+RFD+DE F++R+   VV LQ  D      WE+
Sbjct: 399 HLIDAYPTWESEQPNVTDLTKLYKAAKERFDQDEAFRQRSKDQVVLLQSGDSHSHHVWEI 458

Query: 453 ICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRG 512
           +CD+SR+++QK+YDRL V LTE GES+Y  ++  ++  LEKKG+ E  DG  +++ +   
Sbjct: 459 LCDISRKEYQKVYDRLQVNLTEMGESYYNPYIPGVIERLEKKGITENSDGALVVFTKQFK 518

Query: 513 SIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTI 572
             P  + KSDG   YDT+D+AA+  RI E +A WI+Y TD  Q  HF LL E   +G   
Sbjct: 519 Q-PFMLRKSDGSSLYDTTDIAALWYRIHEMQAAWIIYYTDYTQNDHFSLLFEVARMGG-- 575

Query: 573 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 631
             +L+   H   R+NH+G     FG +      +F    T+S  +  L     E+K+R 
Sbjct: 576 --ILDPAKH---RVNHIG-----FGTVNDESGKRFK---TRSGEVVRLVELLDEAKERM 621



 Score =  285 bits (730), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 159/388 (40%), Positives = 215/388 (55%), Gaps = 44/388 (11%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD I R+LE+ G+DV R+NHVGDWGTQFGMLI HL D +P + ++ P + DL   Y
Sbjct: 362 STIIGDAICRILEFQGYDVARINHVGDWGTQFGMLICHLIDAYPTWESEQPNVTDLTKLY 421

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K +K+RFD+DE F++R+   VV LQ  D      WE++CD+SR+++QK+YDRL V LTE 
Sbjct: 422 KAAKERFDQDEAFRQRSKDQVVLLQSGDSHSHHVWEILCDISRKEYQKVYDRLQVNLTEM 481

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GES+Y  ++  ++  LEKKG                     L K  G             
Sbjct: 482 GESYYNPYIPGVIERLEKKGITENSDGALVVFTKQFKQPFMLRKSDGSSLYDTTDIAALW 541

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+Y TD  Q  HF LL E A+  GIL+P K R++ +GFG V  E  K+FK
Sbjct: 542 YRIHEMQAAWIIYYTDYTQNDHFSLLFEVARMGGILDPAKHRVNHIGFGTVNDESGKRFK 601

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNR--HTELTPTELSEAQQAVAYGCIKYADLSHN 821
           TRSG+ V+L ELLDE   R   +L D+ +   T L   ++  A + + YG +KY DL  +
Sbjct: 602 TRSGEVVRLVELLDEAKERMKTQLLDRIQGGQTSLPADQVDTAAEKIGYGAVKYFDLRQS 661

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN-SEDPPEPDPSQSEVEDRCC 880
               YVFS+D+ML   G+TAVYLL+AY R++SI R AGI+ +      DPS +      C
Sbjct: 662 PTSSYVFSYDRMLSTNGDTAVYLLFAYARLSSIIRKAGIDIASKVSSADPSMALPVVHPC 721

Query: 881 PSHAKTHRKPPFTYTELIEQALKENGLC 908
                          +LI + L  N LC
Sbjct: 722 ELALALELLQFQDILKLINRDLSTNRLC 749



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 10/181 (5%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            LD+++     T L   ++  A + + YG +KY DL  +    YVFS+D+ML   G+TAVY
Sbjct: 626  LDRIQGG--QTSLPADQVDTAAEKIGYGAVKYFDLRQSPTSSYVFSYDRMLSTNGDTAVY 683

Query: 994  LLYAYTRIASIARTAGIN-SEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDL 1052
            LL+AY R++SI R AGI+ +  +  A  S  + + H  E ALA  LL+  D+L L+ RDL
Sbjct: 684  LLFAYARLSSIIRKAGIDIASKVSSADPSMALPVVHPCELALALELLQFQDILKLINRDL 743

Query: 1053 CLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILN 1112
              + LC YLY IS     F   C  I  + +         RL L +AT  VM++CF +L 
Sbjct: 744  STNRLCSYLYTISEKVQTFLTQCRVIGCEEQ-------ENRLFLCQATVNVMQRCFCLLG 796

Query: 1113 I 1113
            I
Sbjct: 797  I 797



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 7/135 (5%)

Query: 18  VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK-KNPFDIA 76
           +F  A+  AFP L    A V  T  K   +FGD+QCN AM++    K      K+P D+A
Sbjct: 225 LFQKAIDSAFPGLHPAVAVVDVTRTKNA-QFGDYQCNSAMSIFTAMKGTPNALKSPRDVA 283

Query: 77  QSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNK 136
            +I + +      NP L     ++  A  GF+N  L   +   ++  ++ +G Q      
Sbjct: 284 NAIINAMKQ--IENPVLQS---ELTVAGAGFINARLEPSFLSARLVSLLKHGAQASPETN 338

Query: 137 KLRVLVDFSSPNIAR 151
           +++V+VDFSSPNIA+
Sbjct: 339 RIKVVVDFSSPNIAK 353


>gi|429329418|gb|AFZ81177.1| arginyl-tRNA synthetase, putative [Babesia equi]
          Length = 584

 Score =  312 bits (800), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 164/380 (43%), Positives = 237/380 (62%), Gaps = 24/380 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q NDA++L K+ KD     +P ++A         EL            + V+  G
Sbjct: 40  KFGDYQWNDALSLFKLAKDSLTVGSPKELA---------ELVKENIEKTAFSSVNVSPQG 90

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+    S+ +  E+IK + +NGV+P  L   ++V +DFSSPNIAKEMHVGHLRSTIIGD+
Sbjct: 91  FLTFVFSKEWIEEEIKSLAINGVKPSKLLNGVKVGIDFSSPNIAKEMHVGHLRSTIIGDS 150

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           I+R+LE+ G++V R+NH+GDWGTQFGMLI ++ +K+PD+LT  P I+DL  FYKE+K R 
Sbjct: 151 IARILEFHGYEVFRINHLGDWGTQFGMLIEYMYEKYPDFLTSMPSISDLTKFYKEAKLRM 210

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQK 482
           D DE FKK++   VV LQ  D D +  W++ICD+S   F +IY RL++     GESFY  
Sbjct: 211 DTDEEFKKKSRSRVVKLQSGDKDSRMVWKVICDLSMEAFNEIYKRLDIKFEVYGESFYND 270

Query: 483 HMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEE 542
            +  +V  L++KG+ E   G  +++  D    P+ +VKSDGG+ YDT+D+A IR RI+E 
Sbjct: 271 FIPDVVKELKEKGIAEDSQGAIVVF-TDVSPAPLMLVKSDGGYGYDTTDMACIRYRIQEL 329

Query: 543 KADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHD--VVRLNHVGDWGTQFGMLI 600
           K DW++YVTD+GQ  HF  + ++       +R   +  H+   VRL+HVG     FGM++
Sbjct: 330 KCDWVIYVTDVGQAEHFAKIFKA-------ARDAGWADHENKRVRLDHVG-----FGMIL 377

Query: 601 AHLQDKFPDYLTKSPPIADL 620
               +KF     ++  + DL
Sbjct: 378 NDFGEKFKTRSGETVKLVDL 397



 Score =  263 bits (671), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 147/347 (42%), Positives = 207/347 (59%), Gaps = 47/347 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I+R+LE+ G++V R+NH+GDWGTQFGMLI ++ +K+PD+LT  P I+DL  FY
Sbjct: 144 STIIGDSIARILEFHGYEVFRINHLGDWGTQFGMLIEYMYEKYPDFLTSMPSISDLTKFY 203

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KE+K R D DE FKK++   VV LQ  D D +  W++ICD+S   F +IY RL++     
Sbjct: 204 KEAKLRMDTDEEFKKKSRSRVVKLQSGDKDSRMVWKVICDLSMEAFNEIYKRLDIKFEVY 263

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFY   +  +V  L++KG                   L L K  G             
Sbjct: 264 GESFYNDFIPDVVKELKEKGIAEDSQGAIVVFTDVSPAPLMLVKSDGGYGYDTTDMACIR 323

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILN--PNKTRMDFVGFGVVLGEDRKK 761
                     ++YVTD+GQ  HF  + + A+ AG  +    + R+D VGFG++L +  +K
Sbjct: 324 YRIQELKCDWVIYVTDVGQAEHFAKIFKAARDAGWADHENKRVRLDHVGFGMILNDFGEK 383

Query: 762 FKTRSGDTVKLSELLDEGLRRS---LDK-LKDKNRHTELTPTELSEAQQAVAYGCIKYAD 817
           FKTRSG+TVKL +LLD  + R+   L+K L+++        ++L    + + YG +KY D
Sbjct: 384 FKTRSGETVKLVDLLDVAVERASAELEKRLQNQTEDDLDAQSDLKGVSETLGYGAVKYYD 443

Query: 818 LSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           L+ +   +Y FSFD MLD RGNTAVYLLYAY RI +I R +GIN E+
Sbjct: 444 LNRSILSNYKFSFDSMLDPRGNTAVYLLYAYARICAIFRKSGINFEE 490



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 105/171 (61%), Gaps = 11/171 (6%)

Query: 949  TELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 1008
            ++L    + + YG +KY DL+ +   +Y FSFD MLD RGNTAVYLLYAY RI +I R +
Sbjct: 425  SDLKGVSETLGYGAVKYYDLNRSILSNYKFSFDSMLDPRGNTAVYLLYAYARICAIFRKS 484

Query: 1009 GINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAF 1068
            GIN E+L ++A    +S+ H  E ALAK +L+   VL  + +DL ++ L EYLYDIS  F
Sbjct: 485  GINFEELDISA----LSVSHTTEIALAKCILKFPAVLDTILKDLAVNRLTEYLYDISCQF 540

Query: 1069 SEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            S FY  C  +  D+E         RL+L   T  +MK CF+++ I+ + ++
Sbjct: 541  SAFYTQCKVV-GDSE------QNSRLILCHCTRMIMKTCFNLIGIKPLERI 584



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 9/106 (8%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q NDA++L K+ KD     +P ++A         EL            +  +  G
Sbjct: 40  KFGDYQWNDALSLFKLAKDSLTVGSPKELA---------ELVKENIEKTAFSSVNVSPQG 90

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+    S+ +  E++K + +NGV+P  L   ++V +DFSSPNIA++
Sbjct: 91  FLTFVFSKEWIEEEIKSLAINGVKPSKLLNGVKVGIDFSSPNIAKE 136


>gi|297829930|ref|XP_002882847.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328687|gb|EFH59106.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 579

 Score =  312 bits (800), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 200/512 (39%), Positives = 293/512 (57%), Gaps = 52/512 (10%)

Query: 241 VHKFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVA 299
           V KF D+QCN+AM L    K KG +   P  +A++        L TN     +++   VA
Sbjct: 40  VGKFEDYQCNNAMGLWSKVKGKGTQFTRPLAVAEA--------LVTNLPTCDMVESCSVA 91

Query: 300 KPGFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRST 357
           +PG+VNV          I+++++NG++   PTL+ K R +VDFSSPNIAK+MHVGHLRST
Sbjct: 92  QPGYVNV---------SIENMLINGIETWAPTLSVK-RAVVDFSSPNIAKKMHVGHLRST 141

Query: 358 IIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK-SPPIADLQAFYK 416
           IIGDTI+R+LEY   +V+R NHVGDWGTQFGMLI +L +KFPD  +     I D+Q+ YK
Sbjct: 142 IIGDTIARMLEYSNVEVLRRNHVGDWGTQFGMLIENLFEKFPDSNSAMETAIEDIQSLYK 201

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 476
            SK +FD D  FK++A Q VV LQ  DP Y K W+ +C++SR D+ +IY RL V L E+G
Sbjct: 202 PSKTKFDADLDFKRKAQQAVVRLQGGDPVYHKTWQKLCEISRADYAEIYQRLRVELEEKG 261

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIR 536
           ESFY+ ++  ++  L  KGL+E  DG ++M+ +D  + P  +VKSDGGFTYDT+DLAA+ 
Sbjct: 262 ESFYKPYIANMIEELNSKGLVEESDGARVMFIKDFKN-PCMLVKSDGGFTYDTTDLAALW 320

Query: 537 QRIEEEKADWIVYVTDLGQGVHF-RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 595
            R+ EEKA+WI+YVTD GQ  HF R  + +  +G      L        R++HV     +
Sbjct: 321 YRLNEEKAEWIIYVTDAGQQEHFDRFFKAARQVG-----WLPDNDETYPRVSHV-----K 370

Query: 596 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK-----RFDEDEIFKKRAYQCVVALQR 650
           FG++      +F +   +  P+ADL    K   K     R  E E   +   Q   A+  
Sbjct: 371 FGVVKGEDGKRFRNRDREIVPLADLLDEAKTRSKAALIERAKEKEWTPEELDQTAEAIGY 430

Query: 651 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES--FYQKHMEQLVPYLEKKG---- 704
               Y    +++ ++S  D++  YD++   L E+G +  +      ++   ++K G    
Sbjct: 431 GAVKYA---DLMNNIS-TDYKFSYDKM---LNEKGNTAVYLLYAHARICSIIKKSGKDID 483

Query: 705 NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKA 736
            L  T KL + +  +   G+H     E  ++A
Sbjct: 484 ELKKTGKLALDHANERALGLHLLQFAETVEEA 515



 Score =  268 bits (685), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/340 (43%), Positives = 199/340 (58%), Gaps = 45/340 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK-SPPIADLQAF 623
           STIIGDTI+R+LEY   +V+R NHVGDWGTQFGMLI +L +KFPD  +     I D+Q+ 
Sbjct: 140 STIIGDTIARMLEYSNVEVLRRNHVGDWGTQFGMLIENLFEKFPDSNSAMETAIEDIQSL 199

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK +FD D  FK++A Q VV LQ  DP Y K W+ +C++SR D+ +IY RL V L E
Sbjct: 200 YKPSKTKFDADLDFKRKAQQAVVRLQGGDPVYHKTWQKLCEISRADYAEIYQRLRVELEE 259

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY+ ++  ++  L  KG                                       
Sbjct: 260 KGESFYKPYIANMIEELNSKGLVEESDGARVMFIKDFKNPCMLVKSDGGFTYDTTDLAAL 319

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKT---RMDFVGFGVVLGEDR 759
              L+  K   I+YVTD GQ  HF    + A++ G L  N     R+  V FGVV GED 
Sbjct: 320 WYRLNEEKAEWIIYVTDAGQQEHFDRFFKAARQVGWLPDNDETYPRVSHVKFGVVKGEDG 379

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+ R  + V L++LLDE   RS   L ++ +  E TP EL +  +A+ YG +KYADL 
Sbjct: 380 KRFRNRDREIVPLADLLDEAKTRSKAALIERAKEKEWTPEELDQTAEAIGYGAVKYADLM 439

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           +N + DY FS+DKML+++GNTAVYLLYA+ RI SI + +G
Sbjct: 440 NNISTDYKFSYDKMLNEKGNTAVYLLYAHARICSIIKKSG 479



 Score =  149 bits (377), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 117/186 (62%), Gaps = 10/186 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E TP EL +  +A+ YG +KYADL +N + DY FS+DKML+++GNTA
Sbjct: 402  RSKAALIERAKEKEWTPEELDQTAEAIGYGAVKYADLMNNISTDYKFSYDKMLNEKGNTA 461

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI + +G + ++L+   ++  ++L+H  E AL   LL+  + +      
Sbjct: 462  VYLLYAHARICSIIKKSGKDIDELK---KTGKLALDHANERALGLHLLQFAETVEEACTK 518

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  H LCEYLYD+S  +++FY NC  +   AE       T RLLL EATA VM+KCF +L
Sbjct: 519  LLPHILCEYLYDLSEHYTKFYSNCQ-VNGSAE------ETSRLLLCEATAIVMRKCFHLL 571

Query: 1112 NIRTVH 1117
             I  V+
Sbjct: 572  GITPVY 577



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 21/111 (18%)

Query: 45  VHKFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAA 103
           V KF D+QCN+AM L    K KG +   P  +A++        L TN     +++    A
Sbjct: 40  VGKFEDYQCNNAMGLWSKVKGKGTQFTRPLAVAEA--------LVTNLPTCDMVESCSVA 91

Query: 104 KPGFVNVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           +PG+VNV          ++++++NG++   PTL+ K R +VDFSSPNIA+K
Sbjct: 92  QPGYVNV---------SIENMLINGIETWAPTLSVK-RAVVDFSSPNIAKK 132


>gi|413949930|gb|AFW82579.1| hypothetical protein ZEAMMB73_640075 [Zea mays]
          Length = 384

 Score =  312 bits (800), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 166/361 (45%), Positives = 231/361 (63%), Gaps = 20/361 (5%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           SV+  LS +   ++Q   P++  +     S       KF D+QCN+AM L    K  G  
Sbjct: 22  SVKQQLSRLVLSSLQTTLPDVEVEPMVEVSA------KFADYQCNNAMGLWSKVKGSGTI 75

Query: 266 -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            KNP  I Q+IA  + S        + +I+   VA PGFVN+ LS  +  ++I+D++VNG
Sbjct: 76  FKNPNSIGQAIAKNLPS--------SDIIESASVAGPGFVNITLSNRWVAQRIQDMLVNG 127

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           ++   P L    R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+ E+    V+R NHVGD
Sbjct: 128 IKTWAPVLPVN-RTVVDFSSPNIAKEMHVGHLRSTIIGDTLARMFEFSNVVVLRRNHVGD 186

Query: 383 WGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           WGTQFGMLI +L +KFP++       I DLQ FYK SK RFD D  FK RA Q VV LQ 
Sbjct: 187 WGTQFGMLIEYLFEKFPNWQEIGCQAIGDLQIFYKASKHRFDSDPDFKARAQQGVVRLQG 246

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            +  Y++AW+ ICD+SR +F  +Y RLNV L E+GESFY  ++ Q++  L  KGL++  +
Sbjct: 247 GEDKYREAWKKICDISRSEFDLVYKRLNVVLEEKGESFYNPYIPQVLEELSNKGLIKESE 306

Query: 502 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           G ++++ +    IP+ +VKSDGGF Y ++DL A+  R+  E+A+WI+YVTD+GQ  HF +
Sbjct: 307 GARVIFIQGH-QIPLIVVKSDGGFNYASTDLTALWYRLNVEQAEWIIYVTDVGQQQHFDM 365

Query: 562 L 562
           +
Sbjct: 366 V 366



 Score =  156 bits (395), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 76/154 (49%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++R+ E+    V+R NHVGDWGTQFGMLI +L +KFP++       I DLQ F
Sbjct: 160 STIIGDTLARMFEFSNVVVLRRNHVGDWGTQFGMLIEYLFEKFPNWQEIGCQAIGDLQIF 219

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK RFD D  FK RA Q VV LQ  +  Y++AW+ ICD+SR +F  +Y RLNV L E
Sbjct: 220 YKASKHRFDSDPDFKARAQQGVVRLQGGEDKYREAWKKICDISRSEFDLVYKRLNVVLEE 279

Query: 684 RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV 717
           +GESFY  ++ Q++  L  KG +  ++   ++++
Sbjct: 280 KGESFYNPYIPQVLEELSNKGLIKESEGARVIFI 313



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 18/146 (12%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           SV+  LS +   ++Q   P++  +     S       KF D+QCN+AM L    K  G  
Sbjct: 22  SVKQQLSRLVLSSLQTTLPDVEVEPMVEVSA------KFADYQCNNAMGLWSKVKGSGTI 75

Query: 70  -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            KNP  I Q+IA  + S        + +I+    A PGFVN+ LS  +  ++++D++VNG
Sbjct: 76  FKNPNSIGQAIAKNLPS--------SDIIESASVAGPGFVNITLSNRWVAQRIQDMLVNG 127

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           ++   P L    R +VDFSSPNIA++
Sbjct: 128 IKTWAPVLPVN-RTVVDFSSPNIAKE 152


>gi|401400287|ref|XP_003880756.1| arginyl-tRNAsynthetase, related [Neospora caninum Liverpool]
 gi|325115167|emb|CBZ50723.1| arginyl-tRNAsynthetase, related [Neospora caninum Liverpool]
          Length = 594

 Score =  312 bits (799), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 162/352 (46%), Positives = 228/352 (64%), Gaps = 19/352 (5%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKI-FKDKGEKKNPF 269
           + + F  A+  AFP + D    +A      + KFGDFQCN AMAL K   KD+   ++P 
Sbjct: 8   VKEAFRRALLAAFPSV-DHAPIIA------ISKFGDFQCNSAMALFKQKSKDELGVQSPK 60

Query: 270 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG--VQP 327
           +  + IA  +  E         +   ++ +  GFV V ++  +  + +K ++     +Q 
Sbjct: 61  EAGEKIAEHLKGE--------PLFSNVQASPQGFVTVDVAGDWLSQDLKQVLRQKGPLQL 112

Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
           P  +KKLRV+VDFSSPN+AKEMHVGHLRSTIIG++I R+L + GH+V R+NH+GDWGTQF
Sbjct: 113 PHADKKLRVMVDFSSPNVAKEMHVGHLRSTIIGESICRILAFHGHEVQRINHIGDWGTQF 172

Query: 388 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           GMLI +L  +FPDY    P I+DL AFYK++K  FD D+ FK R+ + VV LQ  D    
Sbjct: 173 GMLIEYLHSQFPDYKANMPDISDLNAFYKKAKASFDADDGFKARSREMVVKLQGGDEAAL 232

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW 507
           ++W +ICDVSR +F+K+Y RL+VTL ERGES+Y   + ++V  L  KG++ + DG K ++
Sbjct: 233 ESWRLICDVSRHEFEKVYKRLDVTLEERGESYYNPAIPKVVQELTDKGMITVSDGAKCVF 292

Query: 508 GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
                 +P+  VKSDGGF YD++DLAAIR R+ E + DW++YVTDLGQ  HF
Sbjct: 293 TR-VSEVPLMAVKSDGGFGYDSTDLAAIRDRLVERQGDWLIYVTDLGQEEHF 343



 Score =  287 bits (734), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 159/395 (40%), Positives = 226/395 (57%), Gaps = 63/395 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I R+L + GH+V R+NH+GDWGTQFGMLI +L  +FPDY    P I+DL AFY
Sbjct: 141 STIIGESICRILAFHGHEVQRINHIGDWGTQFGMLIEYLHSQFPDYKANMPDISDLNAFY 200

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++K  FD D+ FK R+ + VV LQ  D    ++W +ICDVSR +F+K+Y RL+VTL ER
Sbjct: 201 KKAKASFDADDGFKARSREMVVKLQGGDEAALESWRLICDVSRHEFEKVYKRLDVTLEER 260

Query: 685 GESFYQKHMEQLVPYLEKKGNLS------------------------------------- 707
           GES+Y   + ++V  L  KG ++                                     
Sbjct: 261 GESYYNPAIPKVVQELTDKGMITVSDGAKCVFTRVSEVPLMAVKSDGGFGYDSTDLAAIR 320

Query: 708 --LTKKLG--IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
             L ++ G  ++YVTDLGQ  HF  +   A++AG   P +TR+D +GFGVV G+D K+FK
Sbjct: 321 DRLVERQGDWLIYVTDLGQEEHFAKIFAAAEQAGWHTPPETRVDHMGFGVVQGQDGKRFK 380

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDK-------------------NRHTELTPTELSEA 804
           TRSG+ VKL +LLDE   R+L +L+ +                      T +   E+ +A
Sbjct: 381 TRSGEVVKLVDLLDEAKMRALKELQRRKEEEKEEEEKRESGDGCSCGTGTAVADEEMDKA 440

Query: 805 QQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
            +A+ Y  +KY DL  NR+ DY FS+D+MLD +GNTAVY++YAY RI +I R AG+   D
Sbjct: 441 AEAIGYSAVKYFDLKQNRHTDYKFSYDRMLDPKGNTAVYMMYAYARICAIFRKAGV---D 497

Query: 865 PPEPDPSQSEVEDRCCPSHAKTHRKPPFTYTELIE 899
               DP + ++E+      A T  + P     ++E
Sbjct: 498 ISTLDPEELKIEEPAERKLAVTLAQFPDVLATIVE 532



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 11/176 (6%)

Query: 944  TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIAS 1003
            T +   E+ +A +A+ Y  +KY DL  NR+ DY FS+D+MLD +GNTAVY++YAY RI +
Sbjct: 430  TAVADEEMDKAAEAIGYSAVKYFDLKQNRHTDYKFSYDRMLDPKGNTAVYMMYAYARICA 489

Query: 1004 IARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYD 1063
            I R AG++   L        + +E   E  LA TL +  DVL  +  DL +H L EY+Y 
Sbjct: 490  IFRKAGVDISTL----DPEELKIEEPAERKLAVTLAQFPDVLATIVEDLHIHRLAEYMYK 545

Query: 1064 ISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            +S AF++FY  C  +     G+ +     RLLL EAT K+++  F +L I  + ++
Sbjct: 546  VSGAFTDFYQACKVL----GGRQQNT---RLLLCEATRKILQASFYLLGITPLERI 594



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 18/141 (12%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKI-FKDKGEKKNPF 73
           + + F  A+  AFP + D    +A      + KFGDFQCN AMAL K   KD+   ++P 
Sbjct: 8   VKEAFRRALLAAFPSV-DHAPIIA------ISKFGDFQCNSAMALFKQKSKDELGVQSPK 60

Query: 74  DIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG--VQP 131
           +  + IA  +  E         +   ++A+  GFV V ++  +  + +K ++     +Q 
Sbjct: 61  EAGEKIAEHLKGE--------PLFSNVQASPQGFVTVDVAGDWLSQDLKQVLRQKGPLQL 112

Query: 132 PTLNKKLRVLVDFSSPNIARK 152
           P  +KKLRV+VDFSSPN+A++
Sbjct: 113 PHADKKLRVMVDFSSPNVAKE 133


>gi|170077224|ref|YP_001733862.1| arginyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|238692817|sp|B1XPX8.1|SYR_SYNP2 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|169884893|gb|ACA98606.1| arginyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 585

 Score =  312 bits (799), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 166/328 (50%), Positives = 224/328 (68%), Gaps = 27/328 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEVAKP 301
           KFGD+Q N A++L KI K     KNP +IAQSI   +  ++   NP+         +A P
Sbjct: 38  KFGDYQSNVALSLTKILK-----KNPREIAQSIIEALDIADTCENPT---------IAGP 83

Query: 302 GFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           GF+N  L   Y    +K++  +    ++P    +K  V+VDFSSPNIAKEMHVGHLRSTI
Sbjct: 84  GFINFSLKPSYLATLLKEVQQSDRLAIEPAENPQK--VIVDFSSPNIAKEMHVGHLRSTI 141

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYK 416
           IGD+I+R+LE+ G DV+RLNHVGDWGTQFGMLI +L++ +PD LTK+    I DL AFYK
Sbjct: 142 IGDSIARILEFRGQDVLRLNHVGDWGTQFGMLITYLKEVYPDALTKADALDIGDLVAFYK 201

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 476
           ++K RFDEDE FK+ +   VV LQ  D + +KAW+++C+ SRR+FQKIYD L++ LTERG
Sbjct: 202 KAKVRFDEDEAFKEASRNQVVKLQSGDEESQKAWQLLCEQSRREFQKIYDILDIKLTERG 261

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSD 531
           ESFY  ++  ++  L++ GLLE D G + ++ E     D   +P+ + KSDGGF Y T+D
Sbjct: 262 ESFYNPYLADVLTALDEVGLLEEDAGAQCVFLEGFKNKDGDRLPLIVQKSDGGFNYATTD 321

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           LAAIR RI+E++A  I+YVTD GQ  HF
Sbjct: 322 LAAIRYRIKEDQAKRIIYVTDSGQAGHF 349



 Score =  284 bits (727), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 160/364 (43%), Positives = 215/364 (59%), Gaps = 56/364 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP- 616
           H R    STIIGD+I+R+LE+ G DV+RLNHVGDWGTQFGMLI +L++ +PD LTK+   
Sbjct: 136 HLR----STIIGDSIARILEFRGQDVLRLNHVGDWGTQFGMLITYLKEVYPDALTKADAL 191

Query: 617 -IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
            I DL AFYK++K RFDEDE FK+ +   VV LQ  D + +KAW+++C+ SRR+FQKIYD
Sbjct: 192 DIGDLVAFYKKAKVRFDEDEAFKEASRNQVVKLQSGDEESQKAWQLLCEQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNLS------------------------LTKK 711
            L++ LTERGESFY  ++  ++  L++ G L                         + K 
Sbjct: 252 ILDIKLTERGESFYNPYLADVLTALDEVGLLEEDAGAQCVFLEGFKNKDGDRLPLIVQKS 311

Query: 712 LG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
            G                       I+YVTD GQ  HF  + + A++AG L P+   +  
Sbjct: 312 DGGFNYATTDLAAIRYRIKEDQAKRIIYVTDSGQAGHFAQVFQVAERAGFL-PDDVEVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQ 806
           V FG+V GED KK KTR+GDT+KL +LLDE + RS   L+ +    E   T   + +  Q
Sbjct: 371 VPFGLVQGEDGKKLKTRAGDTIKLKDLLDEAVNRSRADLEKRLAEDERQETADFIEKVSQ 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V  G +KYADLS NR  +Y+FSFDKML  +GNTA Y+LYAY R+  ++R  GI+    P
Sbjct: 431 VVGIGAVKYADLSQNRTSNYIFSFDKMLALQGNTAPYMLYAYVRVQGVSRQGGIDLSTLP 490

Query: 867 EPDP 870
              P
Sbjct: 491 TDTP 494



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            + +  Q V  G +KYADLS NR  +Y+FSFDKML  +GNTA Y+LYAY R+  ++R  GI
Sbjct: 425  IEKVSQVVGIGAVKYADLSQNRTSNYIFSFDKMLALQGNTAPYMLYAYVRVQGVSRQGGI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
               DL      TP+ LE   E  LAK LL++++VLM V +DL  + LCEYLYD+S  F++
Sbjct: 485  ---DLSTLPTDTPIILEEAAELTLAKHLLQLSEVLMSVEQDLMPNRLCEYLYDLSRKFNQ 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+ C  ++ + + +I      RL+LA+ TA+ +K    +L I  + +M
Sbjct: 542  FYEACPILKAEGDRRI-----SRLILADTTARTLKLGLSLLGIEVLDRM 585



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 20/110 (18%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEAAKP 105
           KFGD+Q N A++L KI      KKNP +IAQSI   +  ++   NP++         A P
Sbjct: 38  KFGDYQSNVALSLTKIL-----KKNPREIAQSIIEALDIADTCENPTI---------AGP 83

Query: 106 GFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           GF+N  L   Y    +K++  +    ++P    +K  V+VDFSSPNIA++
Sbjct: 84  GFINFSLKPSYLATLLKEVQQSDRLAIEPAENPQK--VIVDFSSPNIAKE 131


>gi|294934539|ref|XP_002781131.1| arginyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239891437|gb|EER12926.1| arginyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 508

 Score =  311 bits (797), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 234/361 (64%), Gaps = 16/361 (4%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+QCN+AM L K FK   E  +   I + I   + S L       +  + + VA  G
Sbjct: 39  KFGDYQCNNAMGLAKKFKS--ELPDGMKIPKQIGEKIKSNLMEES--PEEFESVTVAPAG 94

Query: 303 FVNVFLSRVYAGEQIKDIIVNG---VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           FV V LS  +  +Q+     +G   +  P      +V+VD SSPNIAKEMHVGHLRSTI+
Sbjct: 95  FVTVKLSSGWIAKQLTSKCKDGKVTLDLPNKEAPRKVIVDMSSPNIAKEMHVGHLRSTIL 154

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           G+T+SR+LEY G+DV R+NHVGDWGTQFGMLI H++D +PD+L  +P ++DLQ FYK +K
Sbjct: 155 GETVSRILEYSGNDVHRINHVGDWGTQFGMLIEHMKDAYPDFLHHTPEVSDLQTFYKAAK 214

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTERGES 478
           KRFDE+  FKKR+ + VVALQ  D   +KAW++ CD+SR+ F+++Y+RL +  L E+GES
Sbjct: 215 KRFDEEPDFKKRSQEEVVALQSGDEYARKAWQICCDISRKSFEEVYNRLGIEGLKEQGES 274

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQR 538
           FY + +   V  LEK+GL+   +G K ++  D   +PM +VKSDGG+ YD++D+ A+  R
Sbjct: 275 FYNEMIGPTVETLEKEGLVVESNGAKCIF-TDVDDVPMMVVKSDGGYGYDSTDVTAVWYR 333

Query: 539 IEEEKADWIVYVTDLGQGVHF-RLLEESTIIG--DTISRLLEYLGHDVVRLNHVGDWGTQ 595
           + +  AD +VY+TDLGQ VHF +L E + + G        LEYLG  VV     GD G +
Sbjct: 334 LTQLHADEVVYITDLGQEVHFKKLFEVAKMAGWHHPPQTKLEYLGFGVV----CGDDGKK 389

Query: 596 F 596
           F
Sbjct: 390 F 390



 Score =  242 bits (618), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 141/336 (41%), Positives = 197/336 (58%), Gaps = 58/336 (17%)

Query: 522 DGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGH 581
           DG  T D  +  A R+ I +  +  I     +G   H R    STI+G+T+SR+LEY G+
Sbjct: 115 DGKVTLDLPNKEAPRKVIVDMSSPNIAKEMHVG---HLR----STILGETVSRILEYSGN 167

Query: 582 DVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRA 641
           DV R+NHVGDWGTQFGMLI H++D +PD+L  +P ++DLQ FYK +KKRFDE+  FKKR+
Sbjct: 168 DVHRINHVGDWGTQFGMLIEHMKDAYPDFLHHTPEVSDLQTFYKAAKKRFDEEPDFKKRS 227

Query: 642 YQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTERGESFYQKHMEQLVPYL 700
            + VVALQ  D   +KAW++ CD+SR+ F+++Y+RL +  L E+GESFY + +   V  L
Sbjct: 228 QEEVVALQSGDEYARKAWQICCDISRKSFEEVYNRLGIEGLKEQGESFYNEMIGPTVETL 287

Query: 701 EKKG------------------NLSLTKKLG-----------------------IVYVTD 719
           EK+G                   + + K  G                       +VY+TD
Sbjct: 288 EKEGLVVESNGAKCIFTDVDDVPMMVVKSDGGYGYDSTDVTAVWYRLTQLHADEVVYITD 347

Query: 720 LGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEG 779
           LGQ VHF+ L E AK AG  +P +T+++++GFGVV G+D KKFKTRSG TVKL++LLDE 
Sbjct: 348 LGQEVHFKKLFEVAKMAGWHHPPQTKLEYLGFGVVCGDDGKKFKTRSGATVKLTDLLDEA 407

Query: 780 LRRSLDKLKDK---------NRHTELTPTELSEAQQ 806
             R+  +L+ +          R T LT  E   A +
Sbjct: 408 EDRAKKELESRLNAGEGEAAGRSTGLTEEEFDRASK 443



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+QCN+AM L K FK   E  +   I + I   + S L       +  + +  A  G
Sbjct: 39  KFGDYQCNNAMGLAKKFKS--ELPDGMKIPKQIGEKIKSNLMEES--PEEFESVTVAPAG 94

Query: 107 FVNVFLSRVYAGEQMKDIIVNG---VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           FV V LS  +  +Q+     +G   +  P      +V+VD SSPNIA++      HL S 
Sbjct: 95  FVTVKLSSGWIAKQLTSKCKDGKVTLDLPNKEAPRKVIVDMSSPNIAKE--MHVGHLRST 152

Query: 164 IHDILISKAI 173
           I    +S+ +
Sbjct: 153 ILGETVSRIL 162



 Score = 41.2 bits (95), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 7/52 (13%)

Query: 1068 FSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            F+ FY  C  +  D E         RLLL EAT +V+ +CFDIL+I  + ++
Sbjct: 464  FTAFYTECKVVGSDQE-------RSRLLLCEATRRVLAQCFDILDITPLERI 508


>gi|356497573|ref|XP_003517634.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Glycine max]
          Length = 604

 Score =  311 bits (797), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 186/438 (42%), Positives = 262/438 (59%), Gaps = 33/438 (7%)

Query: 201 VSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFK 260
           + +  SV+  L+ +F  +++   P+  D    + +   K   KFGD+QCN+AM +    K
Sbjct: 14  IDNPASVKRQLAQLFDLSLRATVPDEPDVVPLIDACAVKGGVKFGDYQCNNAMGIWSKMK 73

Query: 261 DKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
            K    + P  I Q+I +        N   +++ID   VA PGFVNV LS+ +  E ++ 
Sbjct: 74  GKQTGFRGPPAIGQAIVN--------NLPPSEMIDSCSVAGPGFVNVVLSKKWIAESLQR 125

Query: 320 IIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHD-VVR 376
           ++++G+    P L  K R L+DFSSPNIAKEMHVGHLRSTIIGDT++R+LE+   + V+R
Sbjct: 126 MLIDGINSWAPRLPVK-RALIDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSRVECVIR 184

Query: 377 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP-IADLQAFYKESKKRFDEDEIFKKRAYQC 435
            NHVGDWGTQFGMLI +L +KFP+    S   I DLQAFYK SK RFD D  FK RA Q 
Sbjct: 185 RNHVGDWGTQFGMLITNLFEKFPNPDDVSEADIGDLQAFYKASKVRFDSDPEFKLRAQQA 244

Query: 436 VVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKG 495
           VV LQ  +  Y+KAW+ ICDVSR +F K+Y RL V L ERGESFY  ++  ++  L+  G
Sbjct: 245 VVRLQSGEIKYRKAWKQICDVSRAEFDKVYQRLGVQLEERGESFYNPYIPGVLEKLDNLG 304

Query: 496 LLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
           L+E  DG ++++ E    IP+  VK DGG+ Y T+DLA++  R+ EEK +WIVYVTD+GQ
Sbjct: 305 LIEESDGARVIYVEGV-DIPLIAVKRDGGYNYFTTDLASLWYRLNEEKLEWIVYVTDIGQ 363

Query: 556 GVHFRLLEESTIIGDTISRLLEYLGHD---VVRLNHVGDWGTQFGMLIAHLQDKFPDYLT 612
             HF +L ++        R   +L  D     +  H+G     FG+++     +F    T
Sbjct: 364 QQHFDMLFKAY-------RRAGWLPKDENAYPKCTHIG-----FGLVLGEDGKRFR---T 408

Query: 613 KSPPIADLQAFYKESKKR 630
           +S  +  L     E+K+R
Sbjct: 409 RSSEVVRLVDLLDEAKRR 426



 Score =  267 bits (682), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 156/349 (44%), Positives = 209/349 (59%), Gaps = 52/349 (14%)

Query: 565 STIIGDTISRLLEYLGHD-VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP-IADLQA 622
           STIIGDT++R+LE+   + V+R NHVGDWGTQFGMLI +L +KFP+    S   I DLQA
Sbjct: 163 STIIGDTLARMLEFSRVECVIRRNHVGDWGTQFGMLITNLFEKFPNPDDVSEADIGDLQA 222

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK SK RFD D  FK RA Q VV LQ  +  Y+KAW+ ICDVSR +F K+Y RL V L 
Sbjct: 223 FYKASKVRFDSDPEFKLRAQQAVVRLQSGEIKYRKAWKQICDVSRAEFDKVYQRLGVQLE 282

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSL---------------------TKKLG-------- 713
           ERGESFY  ++  +   LEK  NL L                      K+ G        
Sbjct: 283 ERGESFYNPYIPGV---LEKLDNLGLIEESDGARVIYVEGVDIPLIAVKRDGGYNYFTTD 339

Query: 714 ---------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKT---RMDFVGFGVVL 755
                          IVYVTD+GQ  HF +L +  ++AG L  ++    +   +GFG+VL
Sbjct: 340 LASLWYRLNEEKLEWIVYVTDIGQQQHFDMLFKAYRRAGWLPKDENAYPKCTHIGFGLVL 399

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           GED K+F+TRS + V+L +LLDE  RR    + +++   + +  E+ +  +A+ YG +KY
Sbjct: 400 GEDGKRFRTRSSEVVRLVDLLDEAKRRCKIAILERDTAKDWSEEEIEKTSEAIGYGAVKY 459

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           ADL  NR  +Y F+FD+ML+D+GNTAVYLLYA+ RI SI R +G + E+
Sbjct: 460 ADLKINRLTNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEE 508



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 114/190 (60%), Gaps = 11/190 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            RR    + +++   + +  E+ +  +A+ YG +KYADL  NR  +Y F+FD+ML+D+GNT
Sbjct: 425  RRCKIAILERDTAKDWSEEEIEKTSEAIGYGAVKYADLKINRLTNYTFNFDQMLNDKGNT 484

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            AVYLLYA+ RI SI R +G + E+++   ++  + L+HE E AL   LL+  +V      
Sbjct: 485  AVYLLYAHARICSIIRKSGKDIEEVK---RNGKIVLDHEDERALGLHLLQFPEVYEEACT 541

Query: 1051 DLCLHHLCEYLYDISTAFS-EFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             L  + LCEYLY+++  F+ +FY NC  +    E       T RLLL EAT  VM+ CF 
Sbjct: 542  YLLPNFLCEYLYNLAEIFTKKFYANCQVVGSPEE-------TSRLLLCEATVTVMRHCFY 594

Query: 1110 ILNIRTVHKM 1119
            +L I  V+++
Sbjct: 595  LLGIEPVYRL 604



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 12/146 (8%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           SV+  L+ +F  +++   P+  D    + +   K   KFGD+QCN+AM +    K K   
Sbjct: 19  SVKRQLAQLFDLSLRATVPDEPDVVPLIDACAVKGGVKFGDYQCNNAMGIWSKMKGKQTG 78

Query: 70  -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            + P  I Q+I +        N   +++ID    A PGFVNV LS+ +  E ++ ++++G
Sbjct: 79  FRGPPAIGQAIVN--------NLPPSEMIDSCSVAGPGFVNVVLSKKWIAESLQRMLIDG 130

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           +    P L  K R L+DFSSPNIA++
Sbjct: 131 INSWAPRLPVK-RALIDFSSPNIAKE 155


>gi|126649241|ref|XP_001388293.1| RIKEN cDNA 2610011N19 gen [Cryptosporidium parvum Iowa II]
 gi|126117131|gb|EAZ51231.1| RIKEN cDNA 2610011N19 gen [Cryptosporidium parvum Iowa II]
          Length = 616

 Score =  311 bits (796), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 179/395 (45%), Positives = 247/395 (62%), Gaps = 27/395 (6%)

Query: 215 FTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQ 273
           F  A++  FPE  DK A +A +N      FGD+QCN  M +   FK K E  K+P DI  
Sbjct: 12  FNEAIKNLFPEF-DKEAIIAISNPN----FGDYQCNSCMTIFSQFKGKLEGIKSPRDIGM 66

Query: 274 SIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII-VNGVQ-PPTLN 331
            I   +      N  L+     IEVA  GF+ + LS  +    +  +  ++ V+  PT+ 
Sbjct: 67  KIKDYIEK----NGDLSINFKSIEVAPQGFITIKLSDEFIQNNLSKLQEMDEVKVTPTMK 122

Query: 332 -------KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                  K  +V+VDFSSPNIAKEMHVGHLRSTIIGDT  R+LEYLG +V+R+NHVGDWG
Sbjct: 123 FHCKSGRKTPKVIVDFSSPNIAKEMHVGHLRSTIIGDTTCRILEYLGFEVLRVNHVGDWG 182

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLI +L++++P ++   P I+DLQ FYK SKKRFD D  FK R+ Q VV LQ  D 
Sbjct: 183 TQFGMLIEYLKEEYPTFVENLPEISDLQEFYKNSKKRFDTDPQFKLRSQQNVVMLQGGDQ 242

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           D   AW+ IC+VSR +FQKIYDRL + L E GES+Y   +  +V  L++KG+L+LD+G +
Sbjct: 243 DALTAWKKICEVSRVEFQKIYDRLGIRLEEFGESYYNDMIPGVVKMLDEKGILKLDNGAQ 302

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF-RLLE 563
            ++ +    IP+  VKSDGG+ YD++DLAAI  R+    ADW++Y TD+GQ  HF +L +
Sbjct: 303 CVYTK-INEIPLMAVKSDGGYGYDSTDLAAIHHRLITLDADWVIYTTDMGQEEHFMKLFD 361

Query: 564 ESTIIG--DTISRLLEYLGHDVVRLNHVGDWGTQF 596
            +  +G  D  +  L ++G  V++    G+ G +F
Sbjct: 362 VAETMGWHDPSNTRLFFIGFGVIQ----GEDGKKF 392



 Score =  286 bits (732), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 158/350 (45%), Positives = 205/350 (58%), Gaps = 58/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDT  R+LEYLG +V+R+NHVGDWGTQFGMLI +L++++P ++   P I+DLQ FY
Sbjct: 154 STIIGDTTCRILEYLGFEVLRVNHVGDWGTQFGMLIEYLKEEYPTFVENLPEISDLQEFY 213

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K SKKRFD D  FK R+ Q VV LQ  D D   AW+ IC+VSR +FQKIYDRL + L E 
Sbjct: 214 KNSKKRFDTDPQFKLRSQQNVVMLQGGDQDALTAWKKICEVSRVEFQKIYDRLGIRLEEF 273

Query: 685 GESFYQKHMEQLVPYLEKKGNLSL------------------TKKLG------------- 713
           GES+Y   +  +V  L++KG L L                   K  G             
Sbjct: 274 GESYYNDMIPGVVKMLDEKGILKLDNGAQCVYTKINEIPLMAVKSDGGYGYDSTDLAAIH 333

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++Y TD+GQ  HF  L + A+  G  +P+ TR+ F+GFGV+ GED KKFK
Sbjct: 334 HRLITLDADWVIYTTDMGQEEHFMKLFDVAETMGWHDPSNTRLFFIGFGVIQGEDGKKFK 393

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNR-----------------HTELTPTELSEAQQ 806
           TRSGD VKL+EL+DEG+ R+  +L D+                   H  +  ++L     
Sbjct: 394 TRSGDVVKLTELIDEGVARAKKELVDRRNQRRSDQTNKSNTDVEVDHPNIDDSDLDLMAN 453

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
            + +  IKY DL  NR  +Y FSFD+MLD +GNTAVYLLYAY RI +I R
Sbjct: 454 TIGHAAIKYFDLKQNRLTNYRFSFDRMLDPKGNTAVYLLYAYARICAIFR 503



 Score =  106 bits (264), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 17/216 (7%)

Query: 913  GVGRGQEEVQDSLRGYGLRRSLDKLKDKNR-----HTELTPTELSEAQQAVAYGCIKYAD 967
            GV R ++E+ D       +R  D+    N      H  +  ++L      + +  IKY D
Sbjct: 409  GVARAKKELVDRRN----QRRSDQTNKSNTDVEVDHPNIDDSDLDLMANTIGHAAIKYFD 464

Query: 968  LSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI----NSEDLRVAAQSTP 1023
            L  NR  +Y FSFD+MLD +GNTAVYLLYAY RI +I R        NS  ++    +  
Sbjct: 465  LKQNRLTNYRFSFDRMLDPKGNTAVYLLYAYARICAIFRKVEFIQSDNSMVIKQKVSNFK 524

Query: 1024 VSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE 1083
            + + +  E  L+  LLR  +V   +  D   + L +Y Y++S  F++FY  C  I  + +
Sbjct: 525  LKISNNVERKLSIQLLRFPEVFDGILNDFFPNRLADYCYELSECFAQFYTECRIIGLEEQ 584

Query: 1084 GKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
                 +   RLLL   T +++ K  D+L + T+ K+
Sbjct: 585  ----QLEQSRLLLCFLTKQILLKGLDLLGVETLEKI 616



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 27/148 (18%)

Query: 19  FTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQ 77
           F  A++  FPE  DK A +A +N      FGD+QCN  M +   FK K E  K+P DI  
Sbjct: 12  FNEAIKNLFPEF-DKEAIIAISNPN----FGDYQCNSCMTIFSQFKGKLEGIKSPRDIGM 66

Query: 78  SIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAG------EQMKDIIVNGVQP 131
            I   +      N  L+     IE A  GF+ + LS  +        ++M ++ V     
Sbjct: 67  KIKDYIEK----NGDLSINFKSIEVAPQGFITIKLSDEFIQNNLSKLQEMDEVKVT---- 118

Query: 132 PTLN-------KKLRVLVDFSSPNIARK 152
           PT+        K  +V+VDFSSPNIA++
Sbjct: 119 PTMKFHCKSGRKTPKVIVDFSSPNIAKE 146


>gi|425461476|ref|ZP_18840954.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9808]
 gi|389825672|emb|CCI24400.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9808]
          Length = 585

 Score =  310 bits (795), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 160/335 (47%), Positives = 225/335 (67%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I+ N +   T N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQPPEIAGPGFINLTLKPGYLETQLKDLIIDNRLGVATANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  L+++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLETVIRELDQQGLLTEDNGALCVFLDGFTNKEGDPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ E+KA+ I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVREDKAERIIYVTDAGQANHF 349



 Score =  299 bits (766), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 166/364 (45%), Positives = 221/364 (60%), Gaps = 56/364 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +
Sbjct: 136 HLR----STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADAL 191

Query: 618 --ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
              DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD
Sbjct: 192 DLGDLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG---------- 713
            L++ LTERGESFY  ++E ++  L+++G L+             T K G          
Sbjct: 252 ILDIKLTERGESFYNPYLETVIRELDQQGLLTEDNGALCVFLDGFTNKEGDPLPLIVKKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKAG L P+   +  
Sbjct: 312 DGGYNYATTDLAAICYRVREDKAERIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQ 806
           V FG+VLGED KK KTRSG+TVKL ELLD+ +  SL  L+ +  +   E T   +++  +
Sbjct: 371 VAFGLVLGEDGKKLKTRSGETVKLQELLDQAIAYSLADLEKRLASEEREETGDFIAKTAE 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +D  
Sbjct: 431 TVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQDLS 490

Query: 867 EPDP 870
              P
Sbjct: 491 ANSP 494



 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 10/201 (4%)

Query: 919  EEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVF 978
            +E+ D    Y L     +L  + R  E T   +++  + V    +KYADLS NRN +YVF
Sbjct: 395  QELLDQAIAYSLADLEKRLASEER--EETGDFIAKTAETVGLSAVKYADLSQNRNSNYVF 452

Query: 979  SFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTL 1038
            S+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +DL   + ++P+ L+ E E  LAK L
Sbjct: 453  SYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQDL---SANSPLILKDESELILAKQL 509

Query: 1039 LRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAE 1098
            L++ +V+  V  DL  + LC+YLY++S  ++ FY+NC  + K AE     + T RL+L +
Sbjct: 510  LQLPEVISAVEEDLLPNRLCDYLYELSKKYNRFYENCPVL-KAAE----PIKTSRLVLCD 564

Query: 1099 ATAKVMKKCFDILNIRTVHKM 1119
             TA+ +K    +L I  + +M
Sbjct: 565  LTARTLKLGLSLLGIPVLERM 585



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I+ N +   T N   +++VDFSSPNIA++
Sbjct: 75  CQPPEIAGPGFINLTLKPGYLETQLKDLIIDNRLGVATANPSQKIIVDFSSPNIAKE 131


>gi|224064484|ref|XP_002301499.1| predicted protein [Populus trichocarpa]
 gi|222843225|gb|EEE80772.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  310 bits (795), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 177/433 (40%), Positives = 263/433 (60%), Gaps = 37/433 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG-- 263
           +++  L+ +F  +++   P   D    VA+   K    FGD+QCN+AM L    K +   
Sbjct: 10  NLKQKLAKLFQLSLEATVPGEPDIEPLVAACTAK----FGDYQCNNAMGLWSKIKGRPGI 65

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
           E + P  + Q+I          N   +++I+   VA PGFVNV LS+ +  + I+ ++V+
Sbjct: 66  EFRGPPAVGQAIMK--------NLPQSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVD 117

Query: 324 GVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
           G++   P L+ K R +VDFSSPNIAKEMHVGHLRSTIIGDT++ +LE+   +V+R NHVG
Sbjct: 118 GIETWAPKLSIK-RAVVDFSSPNIAKEMHVGHLRSTIIGDTLASMLEFSNVEVLRRNHVG 176

Query: 382 DWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           DWGTQFGMLI  L +KFP++       I DLQAFYKESK+RFD D  FK RA + VV LQ
Sbjct: 177 DWGTQFGMLIEFLFEKFPNFEDVNETAIGDLQAFYKESKQRFDVDAEFKDRAQKAVVRLQ 236

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
             +  Y+KAW  IC++SRR+F ++Y RL V L E+GESFY  ++  ++  L  +GL+E  
Sbjct: 237 SGEQMYRKAWAQICEISRREFDQVYQRLGVHLEEKGESFYNPYIPGVIEALTNQGLVEES 296

Query: 501 DGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
            G ++++ E   +IP+ +VKSDGG+ Y ++D+ A+  R+ EEKA+WI+YVTD+GQ  HF 
Sbjct: 297 KGARVIFIEGI-NIPLIVVKSDGGYNYASTDMTALWYRLTEEKAEWIIYVTDVGQQQHFD 355

Query: 561 LLEESTIIGDTISRLLEYLGHD---VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           +  ++       ++   +L  D     + +HVG     FG+++     +F    T+S  +
Sbjct: 356 MFFKA-------AKRAGWLPADDRQYPKASHVG-----FGLVLGEDGKRFR---TRSTEV 400

Query: 618 ADLQAFYKESKKR 630
             L     E+K R
Sbjct: 401 VRLADLLDEAKTR 413



 Score =  281 bits (720), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 152/340 (44%), Positives = 204/340 (60%), Gaps = 45/340 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++ +LE+   +V+R NHVGDWGTQFGMLI  L +KFP++       I DLQAF
Sbjct: 151 STIIGDTLASMLEFSNVEVLRRNHVGDWGTQFGMLIEFLFEKFPNFEDVNETAIGDLQAF 210

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YKESK+RFD D  FK RA + VV LQ  +  Y+KAW  IC++SRR+F ++Y RL V L E
Sbjct: 211 YKESKQRFDVDAEFKDRAQKAVVRLQSGEQMYRKAWAQICEISRREFDQVYQRLGVHLEE 270

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++  ++  L  +G                                       
Sbjct: 271 KGESFYNPYIPGVIEALTNQGLVEESKGARVIFIEGINIPLIVVKSDGGYNYASTDMTAL 330

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNK---TRMDFVGFGVVLGEDR 759
              L+  K   I+YVTD+GQ  HF +  + AK+AG L  +     +   VGFG+VLGED 
Sbjct: 331 WYRLTEEKAEWIIYVTDVGQQQHFDMFFKAAKRAGWLPADDRQYPKASHVGFGLVLGEDG 390

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TRS + V+L++LLDE   RS   L ++ +  E T  EL +  +AV YG +KYADL 
Sbjct: 391 KRFRTRSTEVVRLADLLDEAKTRSKAALIERGKAAEWTEEELEQTAEAVGYGAVKYADLK 450

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           +NR  +Y F FD+ML+D+GNTAVYLLYA+ RI SI R +G
Sbjct: 451 NNRLTNYTFDFDQMLNDKGNTAVYLLYAHARICSIIRKSG 490



 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 117/188 (62%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E T  EL +  +AV YG +KYADL +NR  +Y F FD+ML+D+GNTA
Sbjct: 413  RSKAALIERGKAAEWTEEELEQTAEAVGYGAVKYADLKNNRLTNYTFDFDQMLNDKGNTA 472

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G ++ +L+   ++  + L+H  E AL   LL+  +V+     +
Sbjct: 473  VYLLYAHARICSIIRKSGKDTGELK---KTGKIVLDHADERALGLHLLQFAEVVEEACTN 529

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LCEYLY++S  ++ FY NC  +    E       T RLLL EATA VM+KCF +L
Sbjct: 530  LLPNVLCEYLYNLSENYTRFYSNCQVVGSAEE-------TSRLLLCEATAVVMRKCFFLL 582

Query: 1112 NIRTVHKM 1119
             I+ V+K+
Sbjct: 583  GIKPVYKI 590



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 17/147 (11%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG-- 67
           +++  L+ +F  +++   P   D    VA+   K    FGD+QCN+AM L    K +   
Sbjct: 10  NLKQKLAKLFQLSLEATVPGEPDIEPLVAACTAK----FGDYQCNNAMGLWSKIKGRPGI 65

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
           E + P  + Q+I          N   +++I+    A PGFVNV LS+ +  + ++ ++V+
Sbjct: 66  EFRGPPAVGQAIMK--------NLPQSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVD 117

Query: 128 GVQ--PPTLNKKLRVLVDFSSPNIARK 152
           G++   P L+ K R +VDFSSPNIA++
Sbjct: 118 GIETWAPKLSIK-RAVVDFSSPNIAKE 143


>gi|126656792|ref|ZP_01728006.1| arginyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126622012|gb|EAZ92720.1| arginyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 585

 Score =  310 bits (794), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 202/532 (37%), Positives = 301/532 (56%), Gaps = 63/532 (11%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           S+ + L   F  A+  +F E   +     +T     H  GD+Q N A+ L K        
Sbjct: 3   SINEQLIQGFQEALVKSFGEEFKEIDPQVTTARDLRH--GDYQANIALPLAKKLG----- 55

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN-- 323
           KNP +IAQ I +        N SL  + +   +  PGF+N+ L   Y   Q+  +  N  
Sbjct: 56  KNPREIAQIIIN--------NLSLNNICESPTIGGPGFINLRLKSSYLESQLTSLYQNQR 107

Query: 324 -GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
            G++   +    +V+VDFSSPNIAKEMHVGHLRSTIIGD I+R LE+LG+DV+RLNHVGD
Sbjct: 108 LGIKK--VENADKVIVDFSSPNIAKEMHVGHLRSTIIGDCIARTLEFLGYDVLRLNHVGD 165

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           WGTQFGMLI +L++ +PD LTK+    I DL  FYK++KKRFDED  F++ A   VV LQ
Sbjct: 166 WGTQFGMLITYLKEVYPDALTKADALEIGDLVNFYKQAKKRFDEDPKFQEAARDAVVKLQ 225

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
             D +  +AW+++CD SRR+FQKIYDRLNV LTERGESFY  +++ ++  L+K+G+LE D
Sbjct: 226 SGDKESLQAWQLLCDQSRREFQKIYDRLNVQLTERGESFYNPYLDDVIKALDKQGILEKD 285

Query: 501 DGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
            G + ++ E   +     +P+ + KSDGG+ Y T+DLAA+R RI+E+KA  I+YVTD GQ
Sbjct: 286 QGAQCVFLEGFTNKSGDPLPLIVQKSDGGYNYATTDLAALRYRIKEDKAKRIIYVTDAGQ 345

Query: 556 GVH----FRLLEESTIIGDTI--------------SRLLEYLGHDVVRLNHVGDWGTQFG 597
             H    F++ E++  + DT+               + L+    + V+L  + D    + 
Sbjct: 346 SNHFAQVFQVAEKANFLPDTVEVTHVPFGLVKGEDGKKLKTRSGETVKLKDLLDEAVNYA 405

Query: 598 M--LIAHLQDK-------FPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 648
              L   LQ +       F ++++++  I+ ++  Y +  +    D IF   +Y  ++AL
Sbjct: 406 RKDLENRLQSEERQESAAFINHVSETVGISAVK--YADLSQNRISDYIF---SYDKMLAL 460

Query: 649 QRFDPDYK-KAWEMICDVSRR---DFQKIYDRLNVTLTERGESFYQKHMEQL 696
           Q     Y   A+  I  +SR    D++ + + + + L E  E    K++ QL
Sbjct: 461 QGNTAPYMLYAYARIQSISREGNIDYENLGENITILLKEETEIELGKYLLQL 512



 Score =  286 bits (732), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 161/354 (45%), Positives = 214/354 (60%), Gaps = 52/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD I+R LE+LG+DV+RLNHVGDWGTQFGMLI +L++ +PD LTK+    I DL  
Sbjct: 139 STIIGDCIARTLEFLGYDVLRLNHVGDWGTQFGMLITYLKEVYPDALTKADALEIGDLVN 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++KKRFDED  F++ A   VV LQ  D +  +AW+++CD SRR+FQKIYDRLNV LT
Sbjct: 199 FYKQAKKRFDEDPKFQEAARDAVVKLQSGDKESLQAWQLLCDQSRREFQKIYDRLNVQLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY  +++ ++  L+K+G L              T K G                 
Sbjct: 259 ERGESFYNPYLDDVIKALDKQGILEKDQGAQCVFLEGFTNKSGDPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + A+KA  L P+   +  V FG+V 
Sbjct: 319 TTDLAALRYRIKEDKAKRIIYVTDAGQSNHFAQVFQVAEKANFL-PDTVEVTHVPFGLVK 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSG+TVKL +LLDE +  +   L+++ +  E   +   ++   + V    +
Sbjct: 378 GEDGKKLKTRSGETVKLKDLLDEAVNYARKDLENRLQSEERQESAAFINHVSETVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           KYADLS NR  DY+FS+DKML  +GNTA Y+LYAY RI SI+R   I+ E+  E
Sbjct: 438 KYADLSQNRISDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNIDYENLGE 491



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   + V    +KYADLS NR  DY+FS+DKML  +GNTA Y+LYAY RI SI+R   I
Sbjct: 425  INHVSETVGISAVKYADLSQNRISDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            + E+L    ++  + L+ E E  L K LL++++ +  V + L  + LC+YLY++S  F+ 
Sbjct: 485  DYENL---GENITILLKEETEIELGKYLLQLSETIKEVEKTLLPNRLCDYLYELSKKFNR 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  ++ D     + V T RLLL + TA+ +K    +L I  + +M
Sbjct: 542  FYENCPVLKSD-----EPVKTSRLLLCDLTARTLKLGLSLLGISVLERM 585



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 20/146 (13%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+ + L   F  A+  +F E   +     +T     H  GD+Q N A+ L K        
Sbjct: 3   SINEQLIQGFQEALVKSFGEEFKEIDPQVTTARDLRH--GDYQANIALPLAKKLG----- 55

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN-- 127
           KNP +IAQ I +        N SL  + +      PGF+N+ L   Y   Q+  +  N  
Sbjct: 56  KNPREIAQIIIN--------NLSLNNICESPTIGGPGFINLRLKSSYLESQLTSLYQNQR 107

Query: 128 -GVQPPTLNKKLRVLVDFSSPNIARK 152
            G++   +    +V+VDFSSPNIA++
Sbjct: 108 LGIKK--VENADKVIVDFSSPNIAKE 131


>gi|166365931|ref|YP_001658204.1| arginyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|189083539|sp|B0JLI8.1|SYR_MICAN RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|166088304|dbj|BAG03012.1| arginyl-tRNA-synthetase [Microcystis aeruginosa NIES-843]
          Length = 585

 Score =  310 bits (794), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 160/335 (47%), Positives = 224/335 (66%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQTPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  L+++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLEAVIRELDQQGLLTEDNGALCVFLDGFTNKEGEPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ E+KA+ I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVREDKAERIIYVTDAGQANHF 349



 Score =  296 bits (759), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 162/351 (46%), Positives = 218/351 (62%), Gaps = 52/351 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +   DL +
Sbjct: 139 STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L++ LT
Sbjct: 199 FYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILDIKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG----------------- 713
           ERGESFY  ++E ++  L+++G L+             T K G                 
Sbjct: 259 ERGESFYNPYLEAVIRELDQQGLLTEDNGALCVFLDGFTNKEGEPLPLIVKKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + AKKAG L P+   +  V FG+VL
Sbjct: 319 TTDLAAICYRVREDKAERIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVHVAFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQAVAYGCI 813
           GED KK KTRSG+TVKL ELLD+ +  SL  L+ +  +   E T   +++  + V    +
Sbjct: 378 GEDGKKLKTRSGETVKLQELLDQAIACSLADLEKRLASEEREETGDFIAKTAETVGLSAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADLS NR+ +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +D
Sbjct: 438 KYADLSQNRHSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQD 488



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            +++  + V    +KYADLS NR+ +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GI
Sbjct: 425  IAKTAETVGLSAVKYADLSQNRHSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            N +DL   + ++ + L+ E E  LAK LL++ +V+  V  DL  + LC+YLY++S  ++ 
Sbjct: 485  NFQDL---SANSSLILKDESELILAKQLLQLPEVISAVEEDLLPNRLCDYLYELSKKYNR 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  + K AE     + T RL L + TA+ +K    +L I  + +M
Sbjct: 542  FYENCPVL-KAAE----PIKTSRLFLCDLTARTLKLGLSLLGIPVLERM 585



 Score = 63.5 bits (153), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIA++
Sbjct: 75  CQTPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKE 131


>gi|294885225|ref|XP_002771232.1| arginyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239874712|gb|EER03048.1| arginyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 602

 Score =  310 bits (793), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 168/365 (46%), Positives = 234/365 (64%), Gaps = 20/365 (5%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+QCN+AM L K FK   E  +   I + I   + S L       +  + + VA  G
Sbjct: 39  KFGDYQCNNAMGLAKKFK--SELPDGMKIPKQIGEKIKSNLMEES--PEEFESVTVAPAG 94

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQP-------PTLNKKLRVLVDFSSPNIAKEMHVGHLR 355
           FV V LS  +  +Q+   ++   +        P      +V+VD SSPNIAKEMHVGHLR
Sbjct: 95  FVTVKLSSGWIAKQLTSSVLGECKDGKVTLDLPNKEAPRKVIVDMSSPNIAKEMHVGHLR 154

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415
           STI+G+T+SR+LEY G+DV R+NHVGDWGTQFGMLI H++D +PD+L  +P ++DLQ FY
Sbjct: 155 STILGETVSRILEYSGNDVHRINHVGDWGTQFGMLIEHMKDAYPDFLHHTPEVSDLQTFY 214

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTE 474
           K +KKRFDE+  FKKR+ + VVALQ  D   +KAW++ CD+SR+ F+++Y+RL +  L E
Sbjct: 215 KAAKKRFDEEPDFKKRSQEEVVALQSGDEYARKAWQICCDISRKSFEEVYNRLGIEGLKE 274

Query: 475 RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           +GESFY + +   V  LEK+GL+   +G K ++  D   +PM +VKSDGG+ YD++D+ A
Sbjct: 275 QGESFYNEMIGPTVETLEKEGLVVESNGAKCIF-TDVDDVPMMVVKSDGGYGYDSTDVTA 333

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHF-RLLEESTIIG--DTISRLLEYLGHDVVRLNHVGD 591
           +  R+ +  AD +VY+TDLGQ VHF +L E + + G        LEYLG  VV     GD
Sbjct: 334 VWYRLTQLHADEVVYITDLGQEVHFKKLFEVAKMAGWHHPPQTKLEYLGFGVV----CGD 389

Query: 592 WGTQF 596
            G +F
Sbjct: 390 DGKKF 394



 Score =  305 bits (782), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 235/391 (60%), Gaps = 58/391 (14%)

Query: 522 DGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGH 581
           DG  T D  +  A R+ I +  +  I     +G   H R    STI+G+T+SR+LEY G+
Sbjct: 119 DGKVTLDLPNKEAPRKVIVDMSSPNIAKEMHVG---HLR----STILGETVSRILEYSGN 171

Query: 582 DVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRA 641
           DV R+NHVGDWGTQFGMLI H++D +PD+L  +P ++DLQ FYK +KKRFDE+  FKKR+
Sbjct: 172 DVHRINHVGDWGTQFGMLIEHMKDAYPDFLHHTPEVSDLQTFYKAAKKRFDEEPDFKKRS 231

Query: 642 YQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTERGESFYQKHMEQLVPYL 700
            + VVALQ  D   +KAW++ CD+SR+ F+++Y+RL +  L E+GESFY + +   V  L
Sbjct: 232 QEEVVALQSGDEYARKAWQICCDISRKSFEEVYNRLGIEGLKEQGESFYNEMIGPTVETL 291

Query: 701 EKKG------------------NLSLTKKLG-----------------------IVYVTD 719
           EK+G                   + + K  G                       +VY+TD
Sbjct: 292 EKEGLVVESNGAKCIFTDVDDVPMMVVKSDGGYGYDSTDVTAVWYRLTQLHADEVVYITD 351

Query: 720 LGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEG 779
           LGQ VHF+ L E AK AG  +P +T+++++GFGVV G+D KKFKTRSG TVKL++LLDE 
Sbjct: 352 LGQEVHFKKLFEVAKMAGWHHPPQTKLEYLGFGVVCGDDGKKFKTRSGATVKLTDLLDEA 411

Query: 780 LRRSLDKLKDK---------NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830
             R+  +L+ +          R T LT  E   A + +    ++Y DL  NR  +Y+F+F
Sbjct: 412 EDRAKKELESRLNAGEGEAAGRSTGLTEEEFDRASKIIGVASVRYFDLRQNRTTNYIFNF 471

Query: 831 DKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           DKMLD +GNTAV+LLYAY RI SI R A  +
Sbjct: 472 DKMLDPKGNTAVFLLYAYARICSILRKANFD 502



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 104/179 (58%), Gaps = 8/179 (4%)

Query: 941  NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
             R T LT  E   A + +    ++Y DL  NR  +Y+F+FDKMLD +GNTAV+LLYAY R
Sbjct: 432  GRSTGLTEEEFDRASKIIGVASVRYFDLRQNRTTNYIFNFDKMLDPKGNTAVFLLYAYAR 491

Query: 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
            I SI R A  +     +   S  V++  EKE ALA  +LR  +V+  V  DL  H LCEY
Sbjct: 492  ICSILRKANFDYHS-GLDYSSEEVTITEEKERALALEILRFAEVMQSVLADLQCHRLCEY 550

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++D++  F+ FY  C  +  D E         RLLL EAT +V+ +CFDIL+I  + ++
Sbjct: 551  MWDLTNRFTAFYTECKVVGSDQE-------RSRLLLCEATRRVLAQCFDILDITPLERI 602



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+QCN+AM L K F  K E  +   I + I   + S L       +  + +  A  G
Sbjct: 39  KFGDYQCNNAMGLAKKF--KSELPDGMKIPKQIGEKIKSNLMEES--PEEFESVTVAPAG 94

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQP-------PTLNKKLRVLVDFSSPNIARKGGFLYPH 159
           FV V LS  +  +Q+   ++   +        P      +V+VD SSPNIA++      H
Sbjct: 95  FVTVKLSSGWIAKQLTSSVLGECKDGKVTLDLPNKEAPRKVIVDMSSPNIAKE--MHVGH 152

Query: 160 LPSQIHDILISKAI 173
           L S I    +S+ +
Sbjct: 153 LRSTILGETVSRIL 166


>gi|427419181|ref|ZP_18909364.1| arginyl-tRNA synthetase [Leptolyngbya sp. PCC 7375]
 gi|425761894|gb|EKV02747.1| arginyl-tRNA synthetase [Leptolyngbya sp. PCC 7375]
          Length = 584

 Score =  310 bits (793), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 173/366 (47%), Positives = 230/366 (62%), Gaps = 29/366 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           +S  D L      A+  AF P+L      +  TN     KFGD+Q N AM+L K  KDK 
Sbjct: 2   LSTLDDLKHRLQTALVSAFGPDLEGTDPVLVPTNNP---KFGDYQANVAMSLAKRLKDK- 57

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
               P  IA  I          N +L  + ++ ++A PGF+N+     Y   Q+K +  +
Sbjct: 58  ----PRAIATKIVE--------NLTLDDLCEEPQIAGPGFINLKFKTTYLQAQLKTVYTD 105

Query: 324 ---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
              GV  PT +   R +VDFSSPNIAKEMHVGHLRSTIIG+ I+R LE+LGHDV+RLNHV
Sbjct: 106 DRLGV--PTADPVQRTIVDFSSPNIAKEMHVGHLRSTIIGECIARTLEFLGHDVLRLNHV 163

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLI HL+D  P+ +T+S    I DL  FYK++KKRFD+DE FK  + + VV 
Sbjct: 164 GDWGTQFGMLITHLRDVCPEAITESSSVDIGDLVEFYKQAKKRFDDDEDFKTTSREAVVD 223

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ  +   +KAW+++C+ SR++FQKIYDRL++T+ ERGESFY   +E +   L+   LLE
Sbjct: 224 LQSGEESARKAWQLLCEQSRKEFQKIYDRLDITIQERGESFYNPLLEDVAKDLKSLELLE 283

Query: 499 LDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            D G ++++ E     D    P+ + KSDGGF Y T+DLAAIRQR  +EKA  ++Y+TD 
Sbjct: 284 EDQGAQVVFLEGFTNKDGNPQPLIVQKSDGGFNYATTDLAAIRQRTIDEKAQRVIYITDA 343

Query: 554 GQGVHF 559
           GQ  HF
Sbjct: 344 GQANHF 349



 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 159/350 (45%), Positives = 209/350 (59%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIG+ I+R LE+LGHDV+RLNHVGDWGTQFGMLI HL+D  P+ +T+S    I DL  
Sbjct: 139 STIIGECIARTLEFLGHDVLRLNHVGDWGTQFGMLITHLRDVCPEAITESSSVDIGDLVE 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++KKRFD+DE FK  + + VV LQ  +   +KAW+++C+ SR++FQKIYDRL++T+ 
Sbjct: 199 FYKQAKKRFDDDEDFKTTSREAVVDLQSGEESARKAWQLLCEQSRKEFQKIYDRLDITIQ 258

Query: 683 ERGESFYQKHMEQL-----------------VPYLE----KKGN---LSLTKKLG----- 713
           ERGESFY   +E +                 V +LE    K GN   L + K  G     
Sbjct: 259 ERGESFYNPLLEDVAKDLKSLELLEEDQGAQVVFLEGFTNKDGNPQPLIVQKSDGGFNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++Y+TD GQ  HF  + + A +A  + P    +  V FG+V 
Sbjct: 319 TTDLAAIRQRTIDEKAQRVIYITDAGQANHFAQVFQVANRAHWI-PAGVELVHVPFGLVK 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ----AVAYG 811
           GE+ KK KTRSG+TVKL  LLDE + R+   L  + R TE    E +E  Q    AV  G
Sbjct: 378 GENGKKLKTRSGETVKLKSLLDEAVTRAEKDL--QTRITEENRDESAEFIQTVSTAVGIG 435

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            +KYADLS NR  DY+FSFDKML  +GNTA Y+LYAY R+  I+R   I+
Sbjct: 436 AVKYADLSQNRTSDYIFSFDKMLALQGNTAPYMLYAYVRVQGISRKGNID 485



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 100/163 (61%), Gaps = 9/163 (5%)

Query: 957  AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLR 1016
            AV  G +KYADLS NR  DY+FSFDKML  +GNTA Y+LYAY R+  I+R   I+   L 
Sbjct: 431  AVGIGAVKYADLSQNRTSDYIFSFDKMLALQGNTAPYMLYAYVRVQGISRKGNIDFTQLG 490

Query: 1017 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1076
             A+    + LE + E ALAK LL ++  +M V RDL  + LC+YL+++S  F++FYD C 
Sbjct: 491  DAS----ILLEDDSELALAKHLLELDTAVMEVARDLYPNRLCQYLFELSQKFNQFYDRCS 546

Query: 1077 CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             ++ +   +     T RL+L + TA+ +K    +L +  + +M
Sbjct: 547  VLQAEEPQR-----TSRLMLCDLTARTLKLGLSLLGMPVLERM 584



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 22/148 (14%)

Query: 9   MSVRDYLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           +S  D L      A+  AF P+L      +  TN     KFGD+Q N AM+L K  KDK 
Sbjct: 2   LSTLDDLKHRLQTALVSAFGPDLEGTDPVLVPTNNP---KFGDYQANVAMSLAKRLKDK- 57

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
               P  IA  I          N +L  + ++ + A PGF+N+     Y   Q+K +  +
Sbjct: 58  ----PRAIATKIVE--------NLTLDDLCEEPQIAGPGFINLKFKTTYLQAQLKTVYTD 105

Query: 128 ---GVQPPTLNKKLRVLVDFSSPNIARK 152
              GV  PT +   R +VDFSSPNIA++
Sbjct: 106 DRLGV--PTADPVQRTIVDFSSPNIAKE 131


>gi|443655283|ref|ZP_21131449.1| arginyl-tRNA synthetase [Microcystis aeruginosa DIANCHI905]
 gi|159030666|emb|CAO88336.1| argS [Microcystis aeruginosa PCC 7806]
 gi|443333666|gb|ELS48216.1| arginyl-tRNA synthetase [Microcystis aeruginosa DIANCHI905]
          Length = 585

 Score =  310 bits (793), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 161/335 (48%), Positives = 224/335 (66%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQPPEIAGPGFINLTLKPGYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  LE++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLETVIRELEQQGLLIEDNGALCVFLDGFTNKEGDPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ E+KA+ I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVREDKAERIIYVTDAGQANHF 349



 Score =  299 bits (766), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 167/364 (45%), Positives = 219/364 (60%), Gaps = 56/364 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +
Sbjct: 136 HLR----STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADAL 191

Query: 618 --ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
              DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD
Sbjct: 192 DLGDLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------- 713
            L++ LTERGESFY  ++E ++  LE++G L              T K G          
Sbjct: 252 ILDIKLTERGESFYNPYLETVIRELEQQGLLIEDNGALCVFLDGFTNKEGDPLPLIVKKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKAG L P+   +  
Sbjct: 312 DGGYNYATTDLAAICYRVREDKAERIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQ 806
           V FG+VLGED KK KTRSG+TVKL ELLD+ +  SL  L+ +  +   E T   ++   +
Sbjct: 371 VAFGLVLGEDGKKLKTRSGETVKLQELLDQAIACSLADLEKRLASEEREETGDFIANTAE 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +D  
Sbjct: 431 TVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQDLS 490

Query: 867 EPDP 870
              P
Sbjct: 491 ANSP 494



 Score =  139 bits (351), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 109/169 (64%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   + V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GI
Sbjct: 425  IANTAETVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            N +DL   + ++P+ L+ E E  LAK LL++ +V+  V  DL  + LC+YLY++S  ++ 
Sbjct: 485  NFQDL---SANSPLILKDESELILAKQLLQLPEVISAVEEDLLPNRLCDYLYELSKKYNR 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  + K AE     + T RL+L + TA+ +K    +L I  + +M
Sbjct: 542  FYENCPVL-KAAE----PIKTSRLVLCDLTARTLKLGLSLLGIPVLERM 585



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIA++
Sbjct: 75  CQPPEIAGPGFINLTLKPGYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKE 131


>gi|425450050|ref|ZP_18829882.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 7941]
 gi|389769281|emb|CCI05830.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 7941]
          Length = 585

 Score =  309 bits (792), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 160/335 (47%), Positives = 224/335 (66%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQTPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  L+++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLETVIRELDQQGLLIEDNGALCVFLDGFTNKEGDPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ E+KA+ I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVREDKAERIIYVTDAGQANHF 349



 Score =  296 bits (757), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 165/364 (45%), Positives = 219/364 (60%), Gaps = 56/364 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +
Sbjct: 136 HLR----STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADAL 191

Query: 618 --ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
              DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD
Sbjct: 192 DLGDLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------- 713
            L++ LTERGESFY  ++E ++  L+++G L              T K G          
Sbjct: 252 ILDIKLTERGESFYNPYLETVIRELDQQGLLIEDNGALCVFLDGFTNKEGDPLPLIVKKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKAG L P+   +  
Sbjct: 312 DGGYNYATTDLAAICYRVREDKAERIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQ 806
           V FG+VLGED KK KTRSG+TVKL ELLD+ +  SL  L+ +  +   E T   +++  +
Sbjct: 371 VAFGLVLGEDGKKLKTRSGETVKLQELLDQAIAYSLADLEKRLASEEREETGDFIAKTAE 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R   IN +D  
Sbjct: 431 TVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGDINFQDLS 490

Query: 867 EPDP 870
              P
Sbjct: 491 ANSP 494



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 121/201 (60%), Gaps = 10/201 (4%)

Query: 919  EEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVF 978
            +E+ D    Y L     +L  + R  E T   +++  + V    +KYADLS NRN +YVF
Sbjct: 395  QELLDQAIAYSLADLEKRLASEER--EETGDFIAKTAETVGLSAVKYADLSQNRNSNYVF 452

Query: 979  SFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTL 1038
            S+DKML+ +GNTA Y+LYAY R+ SI+R   IN +DL   + ++P+ L+ E E  LAK L
Sbjct: 453  SYDKMLNLQGNTAPYMLYAYARVQSISREGDINFQDL---SANSPLILKDESELILAKQL 509

Query: 1039 LRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAE 1098
            L++ +V+  V  DL  + LC+YLY++S  ++ FY+NC  + K AE     + T RL+L +
Sbjct: 510  LQLPEVISAVEEDLLPNRLCDYLYELSKKYNRFYENCPVL-KAAE----PIKTSRLVLCD 564

Query: 1099 ATAKVMKKCFDILNIRTVHKM 1119
             TA+ +K    +L I  + +M
Sbjct: 565  LTARTLKLGLSLLGIPVLERM 585



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIA++
Sbjct: 75  CQTPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKE 131


>gi|425434314|ref|ZP_18814783.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9432]
 gi|389676232|emb|CCH94720.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9432]
          Length = 585

 Score =  309 bits (791), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 159/335 (47%), Positives = 224/335 (66%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQTPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  L+++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLETVIRELDQQGLLTEDNGALCVFLDGFTNKEGDPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ ++KA+ I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVRQDKAERIIYVTDAGQANHF 349



 Score =  300 bits (769), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/364 (45%), Positives = 221/364 (60%), Gaps = 56/364 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +
Sbjct: 136 HLR----STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADAL 191

Query: 618 --ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
              DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD
Sbjct: 192 DLGDLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG---------- 713
            L++ LTERGESFY  ++E ++  L+++G L+             T K G          
Sbjct: 252 ILDIKLTERGESFYNPYLETVIRELDQQGLLTEDNGALCVFLDGFTNKEGDPLPLIVKKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKAG L P+   +  
Sbjct: 312 DGGYNYATTDLAAICYRVRQDKAERIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQ 806
           V FG+VLGED KK KTRSG+TVKL ELLD+ +  SL  L+ +  +   E T   +++  +
Sbjct: 371 VAFGLVLGEDGKKLKTRSGETVKLQELLDQAIAYSLADLEKRLASEEREETGDFIAKTAE 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V    IKYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +D  
Sbjct: 431 TVGLSAIKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQDLS 490

Query: 867 EPDP 870
              P
Sbjct: 491 ANSP 494



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 122/201 (60%), Gaps = 10/201 (4%)

Query: 919  EEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVF 978
            +E+ D    Y L     +L  + R  E T   +++  + V    IKYADLS NRN +YVF
Sbjct: 395  QELLDQAIAYSLADLEKRLASEER--EETGDFIAKTAETVGLSAIKYADLSQNRNSNYVF 452

Query: 979  SFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTL 1038
            S+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +DL   + ++P+ L+ E E  LAK L
Sbjct: 453  SYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQDL---SANSPLILKDESELILAKQL 509

Query: 1039 LRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAE 1098
            L++ +V+  V  DL  + LC+YLY++S  ++ FY+NC  + K AE     + T RL+L +
Sbjct: 510  LQLPEVISAVEEDLLPNRLCDYLYELSKKYNRFYENCPVL-KAAE----PIKTSRLVLCD 564

Query: 1099 ATAKVMKKCFDILNIRTVHKM 1119
             TA+ +K    +L I  + +M
Sbjct: 565  LTARTLKLGLSLLGIPVLERM 585



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIA++
Sbjct: 75  CQTPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKE 131


>gi|440752664|ref|ZP_20931867.1| arginyl-tRNA synthetase [Microcystis aeruginosa TAIHU98]
 gi|440177157|gb|ELP56430.1| arginyl-tRNA synthetase [Microcystis aeruginosa TAIHU98]
          Length = 585

 Score =  309 bits (791), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 160/335 (47%), Positives = 224/335 (66%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVATT--------LLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQPPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  L+++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLETVIRELDQQGLLIEDNGALCVFLDGFTNKEGDPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ E+KA+ I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVREDKAERIIYVTDAGQANHF 349



 Score =  299 bits (765), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 166/364 (45%), Positives = 220/364 (60%), Gaps = 56/364 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +
Sbjct: 136 HLR----STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADAL 191

Query: 618 --ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
              DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD
Sbjct: 192 DLGDLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------- 713
            L++ LTERGESFY  ++E ++  L+++G L              T K G          
Sbjct: 252 ILDIKLTERGESFYNPYLETVIRELDQQGLLIEDNGALCVFLDGFTNKEGDPLPLIVKKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKAG L P+   +  
Sbjct: 312 DGGYNYATTDLAAICYRVREDKAERIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQ 806
           V FG+VLGED KK KTRSG+TVKL ELLD+ +  SL  L+ +  +   E T   +++  +
Sbjct: 371 VAFGLVLGEDGKKLKTRSGETVKLQELLDQAIAYSLADLEKRLASEEREETGDFIAKTAE 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +D  
Sbjct: 431 TVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQDLS 490

Query: 867 EPDP 870
              P
Sbjct: 491 ANSP 494



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 10/201 (4%)

Query: 919  EEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVF 978
            +E+ D    Y L     +L  + R  E T   +++  + V    +KYADLS NRN +YVF
Sbjct: 395  QELLDQAIAYSLADLEKRLASEER--EETGDFIAKTAETVGLSAVKYADLSQNRNSNYVF 452

Query: 979  SFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTL 1038
            S+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +DL   + ++P+ L+ E E  LAK L
Sbjct: 453  SYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQDL---SANSPLILKDESELILAKQL 509

Query: 1039 LRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAE 1098
            L++ +V+  V  DL  + LC+YLY++S  ++ FY+NC  + K AE     + T RL+L +
Sbjct: 510  LQLPEVISAVEEDLLPNRLCDYLYELSKKYNRFYENCPVL-KAAE----PIKTSRLVLCD 564

Query: 1099 ATAKVMKKCFDILNIRTVHKM 1119
             TA+ +K    +L I  + +M
Sbjct: 565  LTARTLKLGLSLLGIPVLERM 585



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVATT--------LLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIA++
Sbjct: 75  CQPPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKE 131


>gi|452824872|gb|EME31872.1| arginyl-tRNA synthetase [Galdieria sulphuraria]
          Length = 681

 Score =  309 bits (791), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 182/452 (40%), Positives = 265/452 (58%), Gaps = 49/452 (10%)

Query: 201 VSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFK 260
           +   M+ R+ L++  T A+   FP+  +    + +       +FGD+Q N A++L K   
Sbjct: 92  IQSDMTTRELLANRVTQALTNLFPDENNWEPQLTAATRP---EFGDYQSNAALSLAK--- 145

Query: 261 DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI 320
               K NP  +A+ IA         +  +  + ++ +VA PGFVN  L + Y   Q++ +
Sbjct: 146 --KRKMNPLQVAEQIAQ--------HTQMNDICEQPQVAPPGFVNFTLKKQYVAIQLQKM 195

Query: 321 IVN----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 376
           + +    G+ P    +K RVLVDFSSPNIAKEMHVGHLRSTIIGD + R+LE+LGH V+R
Sbjct: 196 LADPQRLGISPR--ERKERVLVDFSSPNIAKEMHVGHLRSTIIGDCLCRVLEFLGHQVLR 253

Query: 377 LNHVGDWGTQFGMLIAHLQDKFPDYL--TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQ 434
           +NHVGDWGTQFGMLIA+L++  PD L  T S  + DL  FYK +K+RFDED +F++ A +
Sbjct: 254 INHVGDWGTQFGMLIAYLKEMKPDALMETSSTSLGDLVEFYKAAKRRFDEDSVFQETARK 313

Query: 435 CVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKK 494
            VVALQ  D +   AW  +C+ SR++FQ+IYD L+V LTERGESFY + +  +   LE  
Sbjct: 314 EVVALQAGDENSIHAWSFLCEQSRKEFQQIYDMLDVKLTERGESFYNEWLGIVCKELEDT 373

Query: 495 GLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
           G+   D+G   ++     G      P+ + KSDGGF Y T+D+AAIR R++E+KAD I+Y
Sbjct: 374 GVAVRDEGALCIFVGGHTGRQGKIQPLIVRKSDGGFNYATTDMAAIRYRVKEDKADRILY 433

Query: 550 VTDLGQGVHF-RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFP 608
           +TD GQ +HF ++ E +  IG               +L HV      FG++ +    KF 
Sbjct: 434 ITDAGQSLHFSQVFEAAKKIG---------YAKLETKLEHV-----PFGLVQSEGGKKFK 479

Query: 609 DYLTKSPPIADLQAFYKESKKRFDEDEIFKKR 640
              T+      L+   +E+ +R +ED  F+KR
Sbjct: 480 ---TREGETVKLKDLLQEAVRRAEED--FRKR 506



 Score =  249 bits (637), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 158/396 (39%), Positives = 219/396 (55%), Gaps = 56/396 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL--TKSPPIADLQA 622
           STIIGD + R+LE+LGH V+R+NHVGDWGTQFGMLIA+L++  PD L  T S  + DL  
Sbjct: 233 STIIGDCLCRVLEFLGHQVLRINHVGDWGTQFGMLIAYLKEMKPDALMETSSTSLGDLVE 292

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK +K+RFDED +F++ A + VVALQ  D +   AW  +C+ SR++FQ+IYD L+V LT
Sbjct: 293 FYKAAKRRFDEDSVFQETARKEVVALQAGDENSIHAWSFLCEQSRKEFQQIYDMLDVKLT 352

Query: 683 ERGESFYQKHMEQLVPYLEKKG-----------------------------------NLS 707
           ERGESFY + +  +   LE  G                                   N +
Sbjct: 353 ERGESFYNEWLGIVCKELEDTGVAVRDEGALCIFVGGHTGRQGKIQPLIVRKSDGGFNYA 412

Query: 708 LT------------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
            T            K   I+Y+TD GQ +HF  + E AKK G     +T+++ V FG+V 
Sbjct: 413 TTDMAAIRYRVKEDKADRILYITDAGQSLHFSQVFEAAKKIGYAKL-ETKLEHVPFGLVQ 471

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
            E  KKFKTR G+TVKL +LL E +RR+ +  + + +      +E  +      +  G I
Sbjct: 472 SEGGKKFKTREGETVKLKDLLQEAVRRAEEDFRKRLQAEGREESEEYIKRVAHVIGIGAI 531

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQS 873
           KYADL +NR  +Y FS+ KML  +GNTA Y+LYA+ RI  I R   ++  D  + +  Q 
Sbjct: 532 KYADLKNNRTSNYQFSYTKMLSLQGNTAPYMLYAFARIQGIYRKGDLDLSD-GQSESIQF 590

Query: 874 EVEDRCCPSHAKTHRK-PPFTYTELIEQALKENGLC 908
            ++D    S AK   +     Y  L+E+ LK N LC
Sbjct: 591 ILDDPTELSLAKMLLQLEEMLY--LLERDLKPNILC 624



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 99/162 (61%), Gaps = 6/162 (3%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            +  G IKYADL +NR  +Y FS+ KML  +GNTA Y+LYA+ RI  I R   ++  D + 
Sbjct: 526  IGIGAIKYADLKNNRTSNYQFSYTKMLSLQGNTAPYMLYAFARIQGIYRKGDLDLSDGQ- 584

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
             ++S    L+   E +LAK LL++ ++L L+ RDL  + LC+Y++++S  F++FY+ C  
Sbjct: 585  -SESIQFILDDPTELSLAKMLLQLEEMLYLLERDLKPNILCDYMFELSQRFNQFYETCPV 643

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ ++  +     T RL L + TA  ++ C  +L I T+ ++
Sbjct: 644  LKAESLQR----KTSRLALCKLTANTLQLCLHLLGIPTLERI 681



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 22/152 (14%)

Query: 5   VRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFK 64
           ++  M+ R+ L++  T A+   FP+  +    + +       +FGD+Q N A++L K   
Sbjct: 92  IQSDMTTRELLANRVTQALTNLFPDENNWEPQLTAATRP---EFGDYQSNAALSLAK--- 145

Query: 65  DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI 124
               K NP  +A+ IA         +  +  + ++ + A PGFVN  L + Y   Q++ +
Sbjct: 146 --KRKMNPLQVAEQIAQ--------HTQMNDICEQPQVAPPGFVNFTLKKQYVAIQLQKM 195

Query: 125 IVN----GVQPPTLNKKLRVLVDFSSPNIARK 152
           + +    G+ P    +K RVLVDFSSPNIA++
Sbjct: 196 LADPQRLGISPR--ERKERVLVDFSSPNIAKE 225


>gi|74185395|dbj|BAE30171.1| unnamed protein product [Mus musculus]
          Length = 397

 Score =  308 bits (790), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 163/288 (56%), Positives = 192/288 (66%), Gaps = 41/288 (14%)

Query: 615 PPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIY 674
           PPI DLQAFYKESKKRFD DE FKKRAYQCVV LQ  +PD  KAW +ICDVSR +F+KIY
Sbjct: 1   PPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIY 60

Query: 675 DRLNVTLTERGESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG--- 713
           D L++TL ERGESFYQ  M+ +V   E KG                   L++ K  G   
Sbjct: 61  DALDITLIERGESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYT 120

Query: 714 --------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                               I+YV D GQ +HF+ +   A+  G  +P  T +  VGFGV
Sbjct: 121 YDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGV 180

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           VLGED+KKFKTRSG+TV+L +LL+EGL+RS+DKLK+K R   LT  EL  AQ +VAYGCI
Sbjct: 181 VLGEDKKKFKTRSGETVRLMDLLEEGLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCI 240

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLSHNR  DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 241 KYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 288



 Score =  233 bits (593), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LT  EL  AQ +VAYGCIKYADLSHNR  DY+FSFDKMLDDRG
Sbjct: 206  GLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 265

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+   L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 266  NTAAYLLYAFTRIRSIARLANIDEAMLQRAARETKIILDHEKEWKLGRCILRFPEILQKI 325

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+  V+  R+LL EA A VM K 
Sbjct: 326  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 385

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ V +M
Sbjct: 386  FDILGIKPVQRM 397



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 119/225 (52%), Positives = 153/225 (68%), Gaps = 16/225 (7%)

Query: 406 PPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIY 465
           PPI DLQAFYKESKKRFD DE FKKRAYQCVV LQ  +PD  KAW +ICDVSR +F+KIY
Sbjct: 1   PPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIY 60

Query: 466 DRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGF 525
           D L++TL ERGESFYQ  M+ +V   E KG +++DDGRKI++     S+P+TIVKSDGG+
Sbjct: 61  DALDITLIERGESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPG-CSVPLTIVKSDGGY 119

Query: 526 TYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVR 585
           TYDTSDLAAI+QR+ EEKA+ I+YV D GQ +HF+     TI     ++++ +    V  
Sbjct: 120 TYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHFQ-----TIFA--AAQMIGWYDPKVTL 172

Query: 586 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           + HVG     FG+++   + KF    T+S     L    +E  KR
Sbjct: 173 VTHVG-----FGVVLGEDKKKFK---TRSGETVRLMDLLEEGLKR 209


>gi|425468947|ref|ZP_18847922.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9701]
 gi|389884385|emb|CCI35305.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9701]
          Length = 585

 Score =  308 bits (788), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 158/335 (47%), Positives = 223/335 (66%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVATT--------LLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I  N +     N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQPPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVAAANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFCHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  L+++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLETVIRELDQQGLLTEDNGALCVFLDGFTNKEGDPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ ++KA+ I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVRQDKAERIIYVTDAGQANHF 349



 Score =  300 bits (768), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 165/358 (46%), Positives = 220/358 (61%), Gaps = 56/358 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +
Sbjct: 136 HLR----STIIGDCIARILEFCHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADAL 191

Query: 618 --ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
              DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD
Sbjct: 192 DLGDLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG---------- 713
            L++ LTERGESFY  ++E ++  L+++G L+             T K G          
Sbjct: 252 ILDIKLTERGESFYNPYLETVIRELDQQGLLTEDNGALCVFLDGFTNKEGDPLPLIVKKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKAG L P+   +  
Sbjct: 312 DGGYNYATTDLAAICYRVRQDKAERIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQ 806
           V FG+VLGED KK KTRSG+TVKL ELLD+ +  SL  L+ +  +   E T   +++  +
Sbjct: 371 VAFGLVLGEDGKKLKTRSGETVKLQELLDQAIACSLADLEKRLASEEREETSDFIAKTAE 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
            V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +D
Sbjct: 431 TVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQD 488



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 110/175 (62%), Gaps = 8/175 (4%)

Query: 945  ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 1004
            E T   +++  + V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI
Sbjct: 419  EETSDFIAKTAETVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSI 478

Query: 1005 ARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDI 1064
            +R  GIN +DL   + ++ + L+ E E  LAK LL+  +V+  V  DL  + LC+YLY++
Sbjct: 479  SREGGINFQDL---SANSSLILKDESELILAKQLLQFPEVISAVEEDLLPNRLCDYLYEL 535

Query: 1065 STAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            S  ++ FY+NC  + K AE     + T RL+L + TA+ +K    +L I  + +M
Sbjct: 536  SKKYNRFYENCPVL-KAAE----PIKTSRLVLCDLTARTLKLGLSLLGIPVLERM 585



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVATT--------LLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I  N +     N   +++VDFSSPNIA++
Sbjct: 75  CQPPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVAAANPSQKIIVDFSSPNIAKE 131


>gi|348684015|gb|EGZ23830.1| hypothetical protein PHYSODRAFT_556492 [Phytophthora sojae]
          Length = 814

 Score =  308 bits (788), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 173/453 (38%), Positives = 262/453 (57%), Gaps = 28/453 (6%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           +V   +  +F  A++ A+P + +    VA T  K   +FGD+QCN AM++    K   + 
Sbjct: 232 NVLGVVESIFDAAIKAAYPSV-NVPVEVARTTAKNA-QFGDYQCNSAMSIFTALKGTPDA 289

Query: 266 -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            ++P D+A +I       +A  P    V+D++ VA  GF+N FL++ +  +++ +++ NG
Sbjct: 290 ARSPRDVANTI-------IAAMPE-TPVLDRLSVAGAGFINAFLTKEFVSKRLGNVLANG 341

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           V+P    K+  ++VDFSSPNIAK+MHVGHLRSTIIGDT+ R+LE+  HDV R+NHVGDWG
Sbjct: 342 VKPAPQEKQ-TIVVDFSSPNIAKDMHVGHLRSTIIGDTMCRILEFQDHDVKRINHVGDWG 400

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLI HL + +P + T+ P + DL   YK +K+RFD D  F +R+   VV LQ  D 
Sbjct: 401 TQFGMLICHLTETYPTWETEMPNVTDLTLLYKAAKERFDADADFHERSKAQVVLLQSGDE 460

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
              K W  +C++SR +FQK+YDRL V+L E GESFY   +  ++  L  KGL+E+ +G +
Sbjct: 461 KSCKVWNTLCEISRIEFQKVYDRLGVSLKEMGESFYNPIIPSVLDILRAKGLMEMSNGAE 520

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           +++ +     P  +VKSDG + YDT+D+AA+  R+ E KA+ ++Y TD  Q  HF LL E
Sbjct: 521 VIFTKTHKQ-PFMLVKSDGSYLYDTTDIAALWYRLHEMKANRVIYYTDYSQKDHFNLLFE 579

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
                  + R+         R +HVG     FG +      +F    T+S  +  L    
Sbjct: 580 -------VGRMSGIYDPTKQRADHVG-----FGTVNDESGKRFK---TRSGEVVRLVELL 624

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 657
            E+K R     + +  A Q  + + + D   +K
Sbjct: 625 DEAKVRMKAQLVERIEAGQTSLPMDQVDAAAEK 657



 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 139/340 (40%), Positives = 192/340 (56%), Gaps = 43/340 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDT+ R+LE+  HDV R+NHVGDWGTQFGMLI HL + +P + T+ P + DL   Y
Sbjct: 372 STIIGDTMCRILEFQDHDVKRINHVGDWGTQFGMLICHLTETYPTWETEMPNVTDLTLLY 431

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K +K+RFD D  F +R+   VV LQ  D    K W  +C++SR +FQK+YDRL V+L E 
Sbjct: 432 KAAKERFDADADFHERSKAQVVLLQSGDEKSCKVWNTLCEISRIEFQKVYDRLGVSLKEM 491

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLT----------------------------------- 709
           GESFY   +  ++  L  KG + ++                                   
Sbjct: 492 GESFYNPIIPSVLDILRAKGLMEMSNGAEVIFTKTHKQPFMLVKSDGSYLYDTTDIAALW 551

Query: 710 ------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                 K   ++Y TD  Q  HF LL E  + +GI +P K R D VGFG V  E  K+FK
Sbjct: 552 YRLHEMKANRVIYYTDYSQKDHFNLLFEVGRMSGIYDPTKQRADHVGFGTVNDESGKRFK 611

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNR--HTELTPTELSEAQQAVAYGCIKYADLSHN 821
           TRSG+ V+L ELLDE   R   +L ++     T L   ++  A + + YG +KY DL  +
Sbjct: 612 TRSGEVVRLVELLDEAKVRMKAQLVERIEAGQTSLPMDQVDAAAEKLGYGAVKYFDLRQS 671

Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
              +Y+FSFD+ML   G+TAVYL++AY R++SI R +G++
Sbjct: 672 PTSNYIFSFDRMLSTNGDTAVYLMFAYARLSSIIRKSGVD 711



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 9/173 (5%)

Query: 943  HTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIA 1002
             T L   ++  A + + YG +KY DL  +   +Y+FSFD+ML   G+TAVYL++AY R++
Sbjct: 643  QTSLPMDQVDAAAEKLGYGAVKYFDLRQSPTSNYIFSFDRMLSTNGDTAVYLMFAYARLS 702

Query: 1003 SIARTAGINSEDLRVAAQSTPVSL--EHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
            SI R +G++   L    Q     L  EH  E AL   LL++ DV++ + +DL  + LC Y
Sbjct: 703  SIIRKSGVDMAALVAQQQKEGNVLKPEHPTEQALVIELLQLQDVIVFINKDLSSNRLCNY 762

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
            LY IS     F   C  +  + +       + RLLL +AT KVMK CF +L I
Sbjct: 763  LYTISEKVQTFVTACRVLGSEEQ-------SSRLLLCDATLKVMKTCFSLLGI 808



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 82/143 (57%), Gaps = 12/143 (8%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           +V   +  +F  A++ A+P + +    VA T  K   +FGD+QCN AM++    K   + 
Sbjct: 232 NVLGVVESIFDAAIKAAYPSV-NVPVEVARTTAKNA-QFGDYQCNSAMSIFTALKGTPDA 289

Query: 70  -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            ++P D+A +I       +A  P    V+D++  A  GF+N FL++ +  +++ +++ NG
Sbjct: 290 ARSPRDVANTI-------IAAMPE-TPVLDRLSVAGAGFINAFLTKEFVSKRLGNVLANG 341

Query: 129 VQPPTLNKKLRVLVDFSSPNIAR 151
           V+P    K+  ++VDFSSPNIA+
Sbjct: 342 VKPAPQEKQ-TIVVDFSSPNIAK 363


>gi|422304131|ref|ZP_16391480.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9806]
 gi|389790814|emb|CCI13351.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9806]
          Length = 585

 Score =  308 bits (788), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/335 (47%), Positives = 223/335 (66%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQPPEIAGPGFINITLKPGYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  L+++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLETVIRELDQQGLLTEDNGALCVFLDGFTNKEGDPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ ++KA  I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVRQDKAARIIYVTDAGQANHF 349



 Score =  299 bits (766), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 165/358 (46%), Positives = 220/358 (61%), Gaps = 56/358 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +
Sbjct: 136 HLR----STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADAL 191

Query: 618 --ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
              DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD
Sbjct: 192 DLGDLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG---------- 713
            L++ LTERGESFY  ++E ++  L+++G L+             T K G          
Sbjct: 252 ILDIKLTERGESFYNPYLETVIRELDQQGLLTEDNGALCVFLDGFTNKEGDPLPLIVKKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKAG L P+   +  
Sbjct: 312 DGGYNYATTDLAAICYRVRQDKAARIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQ 806
           V FG+VLGED KK KTRSG+TVKL ELLD+ +  SL  L+ +  +   E T   +++  +
Sbjct: 371 VAFGLVLGEDGKKLKTRSGETVKLQELLDQAIACSLADLEKRLASEEREETSDFIAKTAE 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
            V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +D
Sbjct: 431 TVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQD 488



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 111/175 (63%), Gaps = 8/175 (4%)

Query: 945  ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 1004
            E T   +++  + V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI
Sbjct: 419  EETSDFIAKTAETVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSI 478

Query: 1005 ARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDI 1064
            +R  GIN +DL   + ++ + L+ E E  LAK LL++ +V+  V  DL  + LC+YLY++
Sbjct: 479  SREGGINFQDL---SANSSLILKDESELILAKQLLQLPEVISAVEEDLLPNRLCDYLYEL 535

Query: 1065 STAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            S  ++ FY+NC  + K AE     + T RL+L + TA+ +K    +L I  + +M
Sbjct: 536  SKKYNRFYENCPVL-KAAE----PIKTSRLVLCDLTARTLKLGLYLLGIPVLERM 585



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIA++
Sbjct: 75  CQPPEIAGPGFINITLKPGYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKE 131


>gi|390439638|ref|ZP_10228021.1| Arginyl-tRNA synthetase [Microcystis sp. T1-4]
 gi|389836918|emb|CCI32145.1| Arginyl-tRNA synthetase [Microcystis sp. T1-4]
          Length = 585

 Score =  308 bits (788), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/335 (47%), Positives = 223/335 (66%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVATT--------LLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I  N +     N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQPPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVAAANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  LE++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLETVIRELEQQGLLTEDNGALCVFLDGFTNKEGYPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ ++KA+ I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVRQDKAERIIYVTDAGQANHF 349



 Score =  301 bits (770), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/364 (45%), Positives = 221/364 (60%), Gaps = 56/364 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +
Sbjct: 136 HLR----STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADAL 191

Query: 618 --ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
              DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD
Sbjct: 192 DLGDLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG---------- 713
            L++ LTERGESFY  ++E ++  LE++G L+             T K G          
Sbjct: 252 ILDIKLTERGESFYNPYLETVIRELEQQGLLTEDNGALCVFLDGFTNKEGYPLPLIVKKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKAG L P+   +  
Sbjct: 312 DGGYNYATTDLAAICYRVRQDKAERIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQ 806
           V FG+VLGED KK KTRSG+TVKL ELLD+ +  SL  L+ +  +   E T   +++  +
Sbjct: 371 VAFGLVLGEDGKKLKTRSGETVKLQELLDQAIACSLADLEKRLTSEEREETSDFMAKTAE 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +D  
Sbjct: 431 TVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQDLS 490

Query: 867 EPDP 870
              P
Sbjct: 491 ANSP 494



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 8/175 (4%)

Query: 945  ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 1004
            E T   +++  + V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI
Sbjct: 419  EETSDFMAKTAETVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSI 478

Query: 1005 ARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDI 1064
            +R  GIN +DL   + ++P+ L+ E E  LAK LL++ +V+  V  DL  + LC+YLY++
Sbjct: 479  SREGGINFQDL---SANSPLILKDESELILAKQLLQLPEVISAVEEDLLPNRLCDYLYEL 535

Query: 1065 STAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            S  ++ FY+NC  + K AE     + T RLLL + TA+ +K    +L I  + +M
Sbjct: 536  SKKYNRFYENCPVL-KAAE----PIKTSRLLLCDLTARTLKLGLYLLGIPVLERM 585



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVATT--------LLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I  N +     N   +++VDFSSPNIA++
Sbjct: 75  CQPPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVAAANPSQKIIVDFSSPNIAKE 131


>gi|119487496|ref|ZP_01621106.1| arginyl-tRNA-synthetase [Lyngbya sp. PCC 8106]
 gi|119455665|gb|EAW36801.1| arginyl-tRNA-synthetase [Lyngbya sp. PCC 8106]
          Length = 585

 Score =  308 bits (788), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/367 (46%), Positives = 237/367 (64%), Gaps = 33/367 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           S  ++L   F HA+  AF +   G     V ++N K    FGD+QCN AM+L K  K   
Sbjct: 3   STVEHLRAKFDHAIVAAFGQEMAGTDPMLVPTSNPK----FGDYQCNVAMSLTKALK--- 55

Query: 264 EKKNPFDIA-QSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV 322
              NP  IA Q I  +  S+L   P         E+A PGF+N+ L   Y   Q+ +I+ 
Sbjct: 56  --SNPRAIATQIIEKLEISDLCEPP---------EIAGPGFINLRLKPEYLEAQLNNILT 104

Query: 323 N---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           +   G+  PT++   +V+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+L  DV+RLNH
Sbjct: 105 DERLGI--PTVDNPQKVIVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFLDDDVLRLNH 162

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           VGDWGTQFGMLI +L++ +P+ LT +    I DL AFY+++K RFDED  FK+ + Q VV
Sbjct: 163 VGDWGTQFGMLITYLREVYPEALTTADALDIGDLVAFYRQAKVRFDEDNEFKEASRQEVV 222

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
            LQ    D ++AW ++C+ SRR+FQ IYD L++ L ERGESFY   + ++V  LEK GLL
Sbjct: 223 KLQAGAEDSRRAWTILCEQSRREFQVIYDLLDIQLKERGESFYNSFLSEVVKDLEKTGLL 282

Query: 498 ELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
           E + G K ++      ++  ++P+ + KSDGG+ Y T+DLAA+R RI +++AD ++YVTD
Sbjct: 283 EENQGAKCVFLDGFQNKEGEALPLIVQKSDGGYNYATTDLAALRYRINQDQADRMIYVTD 342

Query: 553 LGQGVHF 559
            GQ  HF
Sbjct: 343 SGQANHF 349



 Score =  267 bits (682), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 153/348 (43%), Positives = 205/348 (58%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+L  DV+RLNHVGDWGTQFGMLI +L++ +P+ LT +    I DL A
Sbjct: 139 STIIGDSIARVLEFLDDDVLRLNHVGDWGTQFGMLITYLREVYPEALTTADALDIGDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K RFDED  FK+ + Q VV LQ    D ++AW ++C+ SRR+FQ IYD L++ L 
Sbjct: 199 FYRQAKVRFDEDNEFKEASRQEVVKLQAGAEDSRRAWTILCEQSRREFQVIYDLLDIQLK 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + ++V  LEK G L                K G                 
Sbjct: 259 ERGESFYNSFLSEVVKDLEKTGLLEENQGAKCVFLDGFQNKEGEALPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++YVTD GQ  HF  + + A+KAG + P++  +  V FG+VL
Sbjct: 319 TTDLAALRYRINQDQADRMIYVTDSGQANHFTQVWQVARKAGWI-PDEVDVIHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLDE + R+   L+ + +    T ++  +    Q V    +
Sbjct: 378 GEDGKKLKTRSGETVRLRDLLDEAINRARKDLETRLKEEGRTESKEFIENVAQVVGMSAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  +YVFSFDKML  +GNTA YLLYAY RI  I R   I+
Sbjct: 438 KYADLSQNRTSNYVFSFDKMLSLQGNTAPYLLYAYVRIQGIRRKGEID 485



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 96/164 (58%), Gaps = 8/164 (4%)

Query: 956  QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL 1015
            Q V    +KYADLS NR  +YVFSFDKML  +GNTA YLLYAY RI  I R   I   D 
Sbjct: 430  QVVGMSAVKYADLSQNRTSNYVFSFDKMLSLQGNTAPYLLYAYVRIQGIRRKGEI---DF 486

Query: 1016 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1075
            +       + L+ E EF LAK LL++N+V+  V  +L  + LC+YL+++S  F++FYD C
Sbjct: 487  KQVGTEAKMQLQEEAEFTLAKHLLQLNEVIETVAIELLPNRLCQYLFELSQKFNQFYDQC 546

Query: 1076 YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              ++ +   +I      RL L + TA+ +K    +L I  + +M
Sbjct: 547  PVLKAEDAQRI-----SRLGLCDLTARTLKLGLSLLGISVLERM 585



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 26/149 (17%)

Query: 10  SVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           S  ++L   F HA+  AF +   G     V ++N K    FGD+QCN AM+L K  K   
Sbjct: 3   STVEHLRAKFDHAIVAAFGQEMAGTDPMLVPTSNPK----FGDYQCNVAMSLTKALK--- 55

Query: 68  EKKNPFDIA-QSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
              NP  IA Q I  +  S+L   P         E A PGF+N+ L   Y   Q+ +I+ 
Sbjct: 56  --SNPRAIATQIIEKLEISDLCEPP---------EIAGPGFINLRLKPEYLEAQLNNILT 104

Query: 127 N---GVQPPTLNKKLRVLVDFSSPNIARK 152
           +   G+  PT++   +V+VDFSSPNIA++
Sbjct: 105 DERLGI--PTVDNPQKVIVDFSSPNIAKE 131


>gi|425455068|ref|ZP_18834793.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9807]
 gi|389804124|emb|CCI17030.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9807]
          Length = 585

 Score =  307 bits (786), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/335 (47%), Positives = 224/335 (66%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQPPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  L+++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLEGVIRELDQQGLLIEDNGALCVFLDGFTNKEGDPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ ++KA+ I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVRQDKAEKIIYVTDAGQANHF 349



 Score =  298 bits (763), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 166/364 (45%), Positives = 220/364 (60%), Gaps = 56/364 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +
Sbjct: 136 HLR----STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADAL 191

Query: 618 --ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
              DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD
Sbjct: 192 DLGDLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------- 713
            L++ LTERGESFY  ++E ++  L+++G L              T K G          
Sbjct: 252 ILDIKLTERGESFYNPYLEGVIRELDQQGLLIEDNGALCVFLDGFTNKEGDPLPLIVKKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKAG L P+   +  
Sbjct: 312 DGGYNYATTDLAAICYRVRQDKAEKIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQ 806
           V FG+VLGED KK KTRSG+TVKL ELLD+ +  SL  L+ +  +   E T   +++  +
Sbjct: 371 VAFGLVLGEDGKKLKTRSGETVKLQELLDQAIACSLADLEKRLASEEREETGDFIAKTAE 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +D  
Sbjct: 431 TVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQDLS 490

Query: 867 EPDP 870
              P
Sbjct: 491 ANSP 494



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 110/169 (65%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            +++  + V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GI
Sbjct: 425  IAKTAETVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            N +DL   + ++P+ L+ E E  LAK LL++ +V+  V  DL  + LC+YLY++S  ++ 
Sbjct: 485  NFQDL---SANSPLILKDESELILAKQLLQLPEVISAVEEDLLPNRLCDYLYELSKKYNR 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  + K AE     + T RL+L + TA+ +K    +L I  + +M
Sbjct: 542  FYENCPVL-KAAE----PIKTSRLVLCDLTARTLKLGLYLLGIPVLERM 585



 Score = 63.2 bits (152), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIA++
Sbjct: 75  CQPPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKE 131


>gi|425445589|ref|ZP_18825617.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9443]
 gi|389734404|emb|CCI01945.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9443]
          Length = 585

 Score =  307 bits (786), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/335 (47%), Positives = 224/335 (66%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQPPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  L+++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLEGVIRELDQQGLLIEDNGALCVFLDGFTNKEGEPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ ++KA+ I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVRQDKAERIIYVTDAGQANHF 349



 Score =  298 bits (763), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 166/364 (45%), Positives = 220/364 (60%), Gaps = 56/364 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +
Sbjct: 136 HLR----STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADAL 191

Query: 618 --ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
              DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD
Sbjct: 192 DLGDLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------- 713
            L++ LTERGESFY  ++E ++  L+++G L              T K G          
Sbjct: 252 ILDIKLTERGESFYNPYLEGVIRELDQQGLLIEDNGALCVFLDGFTNKEGEPLPLIVKKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKAG L P+   +  
Sbjct: 312 DGGYNYATTDLAAICYRVRQDKAERIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQ 806
           V FG+VLGED KK KTRSG+TVKL ELLD+ +  SL  L+ +  +   E T   +++  +
Sbjct: 371 VAFGLVLGEDGKKLKTRSGETVKLQELLDQAIACSLADLEKRLASEEREETGDFIAKTAE 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +D  
Sbjct: 431 TVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQDLS 490

Query: 867 EPDP 870
              P
Sbjct: 491 ANSP 494



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 110/169 (65%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            +++  + V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GI
Sbjct: 425  IAKTAETVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            N +DL   + ++P+ L+ E E  LAK LL++ +V+  V  DL  + LC+YLY++S  ++ 
Sbjct: 485  NFQDL---SANSPLILKDESELILAKQLLQLPEVISAVEEDLLPNRLCDYLYELSKKYNR 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  + K AE     + T RL+L + TA+ +K    +L I  + +M
Sbjct: 542  FYENCPVL-KAAE----PIKTSRLVLCDLTARTLKLGLSLLGIPVLERM 585



 Score = 63.2 bits (152), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I  N +   T N   +++VDFSSPNIA++
Sbjct: 75  CQPPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKE 131


>gi|323457135|gb|EGB13001.1| hypothetical protein AURANDRAFT_18800, partial [Aureococcus
           anophagefferens]
          Length = 584

 Score =  307 bits (786), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/386 (42%), Positives = 229/386 (59%), Gaps = 24/386 (6%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKK--NP 268
           ++ +F  A+  A PE GD +  V          FGD+QCN  M + K  K  G  +  +P
Sbjct: 1   VTRLFAAAIAAAVPEAGDVSPGVMRCGNA---AFGDYQCNAPMGIFKTLKANGVARLPSP 57

Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQ-P 327
             + ++IA+ V +          V+    VA  GF+N  +         + +  +GV  P
Sbjct: 58  RAVGEAIAAAVPAN--------GVLKSASVAPAGFINAHVEESLLSAHAQRVAASGVAAP 109

Query: 328 PTLNK---KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           P L+      +VLVDFSSPNIAKEMHVGHLRSTIIGDTI R+LE+ GHDV R+NHVGDWG
Sbjct: 110 PPLSAFGGARKVLVDFSSPNIAKEMHVGHLRSTIIGDTICRVLEFCGHDVRRVNHVGDWG 169

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLI H+++ +PD+L   P I DL  FYK +KKRFDEDE FK+ + + VVALQ  D 
Sbjct: 170 TQFGMLITHMEEAYPDFLQNPPNITDLTTFYKNAKKRFDEDEQFKEVSRKTVVALQAGDA 229

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
             +  W ++CD+SR++F K+Y RL+V + E GES+Y   +   +  LE  GL+  + G  
Sbjct: 230 RCRAIWSVLCDISRKEFDKVYARLDVKVEEFGESYYNAMIPGAIGLLEDAGLVNAESGAA 289

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
            ++     S P+ I KSDGG+ YD++D+AAI  R+     +W+VYVTDLGQ  HF +  E
Sbjct: 290 CVFLPGH-SFPLIIRKSDGGYGYDSTDMAAIHHRLRTLGVEWVVYVTDLGQAEHFHMCFE 348

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVG 590
           +       ++  +   H  VRL+HVG
Sbjct: 349 AA----RAAKWDDASAH--VRLHHVG 368



 Score =  277 bits (708), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 149/338 (44%), Positives = 198/338 (58%), Gaps = 44/338 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDTI R+LE+ GHDV R+NHVGDWGTQFGMLI H+++ +PD+L   P I DL  FY
Sbjct: 141 STIIGDTICRVLEFCGHDVRRVNHVGDWGTQFGMLITHMEEAYPDFLQNPPNITDLTTFY 200

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K +KKRFDEDE FK+ + + VVALQ  D   +  W ++CD+SR++F K+Y RL+V + E 
Sbjct: 201 KNAKKRFDEDEQFKEVSRKTVVALQAGDARCRAIWSVLCDISRKEFDKVYARLDVKVEEF 260

Query: 685 GESFYQKHMEQLVPYLEKKGNLSL------------------------------------ 708
           GES+Y   +   +  LE  G ++                                     
Sbjct: 261 GESYYNAMIPGAIGLLEDAGLVNAESGAACVFLPGHSFPLIIRKSDGGYGYDSTDMAAIH 320

Query: 709 --TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNK-TRMDFVGFGVVLGEDRKKF 762
              + LG   +VYVTDLGQ  HF +  E A+ A   + +   R+  VGFGVV GED K+F
Sbjct: 321 HRLRTLGVEWVVYVTDLGQAEHFHMCFEAARAAKWDDASAHVRLHHVGFGVVQGEDGKRF 380

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQAVAYGCIKYADLSH 820
           KTRSG+TV+L +LLD  + R    L D+       L P E+  A  A+ YG +KY DL  
Sbjct: 381 KTRSGETVRLVDLLDASVERMEKSLSDRVAEGKCALPPAEVKRAAAAIGYGAVKYFDLHQ 440

Query: 821 NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           + + +Y FS+DKML   GNTAVYLL+A+ R+ASI   A
Sbjct: 441 HPSTNYKFSYDKMLSTSGNTAVYLLFAHARLASIVAKA 478



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 98/170 (57%), Gaps = 9/170 (5%)

Query: 946  LTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI- 1004
            L P E+  A  A+ YG +KY DL  + + +Y FS+DKML   GNTAVYLL+A+ R+ASI 
Sbjct: 416  LPPAEVKRAAAAIGYGAVKYFDLHQHPSTNYKFSYDKMLSTSGNTAVYLLFAHARLASIV 475

Query: 1005 ARTAGINSEDLRVAAQSTPVSL-EHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYD 1063
            A+       D + AA    + L +H KE ALA  L +  +V++ V  D     +C+YLY 
Sbjct: 476  AKARETRKVDAKAAAAGAALVLTQHAKERALAFELTQFAEVVLSVADDFLPVRICDYLYK 535

Query: 1064 ISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
            I+T F+EF   C  ++     +       RL+L EAT  VM+KCFD+L I
Sbjct: 536  IATKFTEFVTECKVLDDPRMAE-------RLVLCEATGVVMRKCFDLLGI 578



 Score = 60.1 bits (144), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 17/144 (11%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKK--NP 72
           ++ +F  A+  A PE GD +  V          FGD+QCN  M + K  K  G  +  +P
Sbjct: 1   VTRLFAAAIAAAVPEAGDVSPGVMRCGNA---AFGDYQCNAPMGIFKTLKANGVARLPSP 57

Query: 73  FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV-QP 131
             + ++IA+ V +          V+     A  GF+N  +         + +  +GV  P
Sbjct: 58  RAVGEAIAAAVPAN--------GVLKSASVAPAGFINAHVEESLLSAHAQRVAASGVAAP 109

Query: 132 PTLNK---KLRVLVDFSSPNIARK 152
           P L+      +VLVDFSSPNIA++
Sbjct: 110 PPLSAFGGARKVLVDFSSPNIAKE 133


>gi|427725331|ref|YP_007072608.1| arginyl-tRNA synthetase [Leptolyngbya sp. PCC 7376]
 gi|427357051|gb|AFY39774.1| arginyl-tRNA synthetase [Leptolyngbya sp. PCC 7376]
          Length = 585

 Score =  306 bits (785), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 168/328 (51%), Positives = 223/328 (67%), Gaps = 27/328 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEVAKP 301
           KFGD+Q N A++L KI K     KNP  IAQ I   +  ++L   P+         +A P
Sbjct: 38  KFGDYQSNVALSLTKILK-----KNPRVIAQEIIDALDVADLCEAPT---------IAGP 83

Query: 302 GFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           GF+N  L   Y    +K++  +   G+   T  +K  V+VDFSSPNIAKEMHVGHLRSTI
Sbjct: 84  GFINFTLKPSYLEILLKELQQSDRLGIDKTTDPQK--VIVDFSSPNIAKEMHVGHLRSTI 141

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYK 416
           IGD+I+R+LE+ G DVVRLNHVGDWGTQFGMLI +L++ +PD LT++    I DL AFYK
Sbjct: 142 IGDSIARVLEFRGQDVVRLNHVGDWGTQFGMLITYLREAYPDALTQADALDIGDLVAFYK 201

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 476
           ++K RFD+DE FK+ + + VVALQ  D +  +AW+++CD SRR+FQKIYD L++ +TERG
Sbjct: 202 KAKIRFDDDEEFKENSRKQVVALQSGDEESNQAWQLLCDQSRREFQKIYDILDIKITERG 261

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSD 531
           ESFY  ++  +V  L+K GLLE D G + ++ E     D   +P+ + KSDGGF Y T+D
Sbjct: 262 ESFYNPYLADVVTDLKKVGLLEKDAGAQCVFLEGFKNKDGDRLPLIVQKSDGGFNYATTD 321

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           LAAIR RI+E+ A+ IVYVTD GQ  HF
Sbjct: 322 LAAIRYRIKEDGAERIVYVTDSGQAGHF 349



 Score =  278 bits (710), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 166/403 (41%), Positives = 232/403 (57%), Gaps = 61/403 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP- 616
           H R    STIIGD+I+R+LE+ G DVVRLNHVGDWGTQFGMLI +L++ +PD LT++   
Sbjct: 136 HLR----STIIGDSIARVLEFRGQDVVRLNHVGDWGTQFGMLITYLREAYPDALTQADAL 191

Query: 617 -IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
            I DL AFYK++K RFD+DE FK+ + + VVALQ  D +  +AW+++CD SRR+FQKIYD
Sbjct: 192 DIGDLVAFYKKAKIRFDDDEEFKENSRKQVVALQSGDEESNQAWQLLCDQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNLS------------------------LTKK 711
            L++ +TERGESFY  ++  +V  L+K G L                         + K 
Sbjct: 252 ILDIKITERGESFYNPYLADVVTDLKKVGLLEKDAGAQCVFLEGFKNKDGDRLPLIVQKS 311

Query: 712 LG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
            G                       IVYVTD GQ  HF  + + AK+A  L  +   +  
Sbjct: 312 DGGFNYATTDLAAIRYRIKEDGAERIVYVTDSGQAGHFAQVFQVAKRAEFLTDDVEAV-H 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRH--TELTPTELSEAQQ 806
           V FG+V GED KK KTRSG+T+KL +LL+E + RS   ++ + +   ++ +P  + +  +
Sbjct: 371 VPFGLVQGEDGKKLKTRSGETIKLKDLLNEAVVRSRADIEKRLQEYDSQESPEFIEQVAK 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V  G +KYADLS NR  +Y+FSFDKML  +GNTA Y+LYAY R+  ++R  GI+  + P
Sbjct: 431 VVGIGAVKYADLSQNRTSNYIFSFDKMLTLQGNTAPYMLYAYVRVQGVSRQGGIDLANLP 490

Query: 867 EPDP-SQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLC 908
              P   SE  +     H     +      E++E+ L  N LC
Sbjct: 491 TDTPIILSEPAELTLAKHIFQLGE----VLEVVERELMPNRLC 529



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 8/173 (4%)

Query: 947  TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006
            +P  + +  + V  G +KYADLS NR  +Y+FSFDKML  +GNTA Y+LYAY R+  ++R
Sbjct: 421  SPEFIEQVAKVVGIGAVKYADLSQNRTSNYIFSFDKMLTLQGNTAPYMLYAYVRVQGVSR 480

Query: 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST 1066
              GI   DL      TP+ L    E  LAK + ++ +VL +V R+L  + LCEYLY++S 
Sbjct: 481  QGGI---DLANLPTDTPIILSEPAELTLAKHIFQLGEVLEVVERELMPNRLCEYLYELSR 537

Query: 1067 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             F++FY+ C  ++  AEG  +   T RL+LA+ TA+ +K    +L I  + +M
Sbjct: 538  KFNQFYEACPILK--AEGDRR---TSRLILADTTARTLKLGLSLLGIEVLDRM 585



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 20/110 (18%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEAAKP 105
           KFGD+Q N A++L KI      KKNP  IAQ I   +  ++L   P++         A P
Sbjct: 38  KFGDYQSNVALSLTKIL-----KKNPRVIAQEIIDALDVADLCEAPTI---------AGP 83

Query: 106 GFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           GF+N  L   Y    +K++  +   G+   T  +K  V+VDFSSPNIA++
Sbjct: 84  GFINFTLKPSYLEILLKELQQSDRLGIDKTTDPQK--VIVDFSSPNIAKE 131


>gi|9757672|dbj|BAB08191.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 605

 Score =  306 bits (784), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 173/429 (40%), Positives = 256/429 (59%), Gaps = 32/429 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL-CKIFKDKGE 264
           SV   L  + T +++   P+L      V    E     FGD+QCN+AM++  +I      
Sbjct: 24  SVEQQLCTLITSSLRATVPDL-----DVEPMLEVSKPGFGDYQCNNAMSVFSRIRGSATN 78

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            +NP  + Q+IA+        N   + +I+ I VA PG++N+ LS  +  ++I+D++V G
Sbjct: 79  FRNPMAVGQAIAN--------NLPQSNIIESISVAGPGYINITLSSNWIAQRIQDMLVCG 130

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           ++   P L  K R ++DFSSPNIAKEMHVGH+RSTIIGDT++ + E+   +V+R NHVGD
Sbjct: 131 IKTWAPILPVK-RAVLDFSSPNIAKEMHVGHIRSTIIGDTLAHMFEFTNVEVLRRNHVGD 189

Query: 383 WGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           WGTQFGMLI  L ++FPD+    +  + DLQ+FYK SKKRFD+D  FK+RA Q VV LQ 
Sbjct: 190 WGTQFGMLIEFLFEQFPDWEDVGNQAVGDLQSFYKASKKRFDDDPDFKERARQAVVRLQG 249

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            +  Y+ AW+ IC +SR +F  +Y RLNV L E+GESFY  ++  ++  L  KGL+    
Sbjct: 250 GEDKYRAAWKKICQISRMEFDLVYKRLNVKLEEKGESFYNPYIPPVLEELTNKGLIVESK 309

Query: 502 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           G ++++ ED    P+ ++K DGGF Y ++DLAA+  R+  EKA+WI+YVTD+GQ  HF +
Sbjct: 310 GARVIFVEDH---PLIVIKQDGGFNYASTDLAALWYRLNVEKAEWIIYVTDVGQQRHFHM 366

Query: 562 LEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 621
           L  +  +      L E  G    + +HVG     FG+++     +F    T+   +  L 
Sbjct: 367 LFTAAKMA---GWLPEQNGKKYPKASHVG-----FGLVLGSDGKRFR---TRCSEVVRLV 415

Query: 622 AFYKESKKR 630
               E+K R
Sbjct: 416 DLLDEAKAR 424



 Score =  263 bits (672), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 149/347 (42%), Positives = 199/347 (57%), Gaps = 48/347 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++ + E+   +V+R NHVGDWGTQFGMLI  L ++FPD+    +  + DLQ+F
Sbjct: 163 STIIGDTLAHMFEFTNVEVLRRNHVGDWGTQFGMLIEFLFEQFPDWEDVGNQAVGDLQSF 222

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SKKRFD+D  FK+RA Q VV LQ  +  Y+ AW+ IC +SR +F  +Y RLNV L E
Sbjct: 223 YKASKKRFDDDPDFKERARQAVVRLQGGEDKYRAAWKKICQISRMEFDLVYKRLNVKLEE 282

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++  ++  L  KG                                       
Sbjct: 283 KGESFYNPYIPPVLEELTNKGLIVESKGARVIFVEDHPLIVIKQDGGFNYASTDLAALWY 342

Query: 705 NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL---NPNK-TRMDFVGFGVVLGEDRK 760
            L++ K   I+YVTD+GQ  HF +L   AK AG L   N  K  +   VGFG+VLG D K
Sbjct: 343 RLNVEKAEWIIYVTDVGQQRHFHMLFTAAKMAGWLPEQNGKKYPKASHVGFGLVLGSDGK 402

Query: 761 KFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYA 816
           +F+TR  + V+L +LLDE   RS    + +     +  + T  EL    +A+ YG +KY+
Sbjct: 403 RFRTRCSEVVRLVDLLDEAKARSKAQLIKRFTGNGQIADWTDDELDRTSEAIGYGAVKYS 462

Query: 817 DLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           DL +NR  DY FSFD+ML D+GNTAVYL YA+ RI SI R A  + E
Sbjct: 463 DLKNNRLTDYTFSFDQMLSDKGNTAVYLQYAHARICSIIRKASKDVE 509



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/176 (43%), Positives = 103/176 (58%), Gaps = 10/176 (5%)

Query: 944  TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIAS 1003
             + T  EL    +A+ YG +KY+DL +NR  DY FSFD+ML D+GNTAVYL YA+ RI S
Sbjct: 440  ADWTDDELDRTSEAIGYGAVKYSDLKNNRLTDYTFSFDQMLSDKGNTAVYLQYAHARICS 499

Query: 1004 IARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYD 1063
            I R A  + E L++      ++L H  E  L   L++  +V+     DL  H LC+YLY 
Sbjct: 500  IIRKASKDVEKLKMTG---AITLGHPYERFLGLHLIQFTEVVEQACADLQPHRLCDYLYS 556

Query: 1064 ISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            +S  FS+FY NC  +    E       T RLLL EAT  +M++CF +L I  VHK+
Sbjct: 557  LSLTFSKFYTNCQVVGSPEE-------TSRLLLCEATGIIMRQCFHLLGITPVHKL 605



 Score = 73.2 bits (178), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 17/146 (11%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL-CKIFKDKGE 68
           SV   L  + T +++   P+L      V    E     FGD+QCN+AM++  +I      
Sbjct: 24  SVEQQLCTLITSSLRATVPDL-----DVEPMLEVSKPGFGDYQCNNAMSVFSRIRGSATN 78

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            +NP  + Q+IA+        N   + +I+ I  A PG++N+ LS  +  ++++D++V G
Sbjct: 79  FRNPMAVGQAIAN--------NLPQSNIIESISVAGPGYINITLSSNWIAQRIQDMLVCG 130

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           ++   P L  K R ++DFSSPNIA++
Sbjct: 131 IKTWAPILPVK-RAVLDFSSPNIAKE 155


>gi|443315321|ref|ZP_21044818.1| arginyl-tRNA synthetase [Leptolyngbya sp. PCC 6406]
 gi|442785082|gb|ELR94925.1| arginyl-tRNA synthetase [Leptolyngbya sp. PCC 6406]
          Length = 585

 Score =  306 bits (783), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 166/331 (50%), Positives = 210/331 (63%), Gaps = 33/331 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSI-ASVVTSELATNPSLAKVIDKIEVAKP 301
           KFGDFQ N AMAL K  KDK     P  IA+ I A +  ++L   P         E+A P
Sbjct: 38  KFGDFQANGAMALAKRLKDK-----PRAIAEKIVAHLEVTDLCEPP---------EIAGP 83

Query: 302 GFVNVFLSRVYAGEQIKDII------VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLR 355
           GF+N+ L   Y   Q+  +       V  V  P      +V+VDFSSPNIAKEMHVGHLR
Sbjct: 84  GFINLRLKATYIEAQLNALTGDERLGVAAVAQPQ-----KVIVDFSSPNIAKEMHVGHLR 138

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 413
           STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI HLQ   P+ LT      I DL  
Sbjct: 139 STIIGDSIARVLEFAGHDVLRLNHVGDWGTQFGMLITHLQTACPEALTSGGNVDIGDLVT 198

Query: 414 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 473
           FYK++K+RFD+DE FK R+ + VVALQ  D   + AW  +C+ SR+ FQ +YDRL++ LT
Sbjct: 199 FYKQAKERFDQDEDFKARSREAVVALQSGDATARAAWTALCNQSRKAFQTLYDRLDICLT 258

Query: 474 ERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYD 528
           ERGESFY   +  +V  L  +GLL  D G ++++ E     +   +P+ I KSDGGF Y 
Sbjct: 259 ERGESFYNPFLADVVQELAAQGLLVADQGAQVVFLEGFSNKEGDPLPLIIQKSDGGFNYA 318

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           T+DLAAIR R +E+ A  I+YV D GQG HF
Sbjct: 319 TTDLAAIRYRTQEDGAQRILYVVDAGQGNHF 349



 Score =  276 bits (707), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 155/348 (44%), Positives = 201/348 (57%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI HLQ   P+ LT      I DL  
Sbjct: 139 STIIGDSIARVLEFAGHDVLRLNHVGDWGTQFGMLITHLQTACPEALTSGGNVDIGDLVT 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K+RFD+DE FK R+ + VVALQ  D   + AW  +C+ SR+ FQ +YDRL++ LT
Sbjct: 199 FYKQAKERFDQDEDFKARSREAVVALQSGDATARAAWTALCNQSRKAFQTLYDRLDICLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L  +G L              + K G                 
Sbjct: 259 ERGESFYNPFLADVVQELAAQGLLVADQGAQVVFLEGFSNKEGDPLPLIIQKSDGGFNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YV D GQG HF  + + A +AG + P    +  V FGVV 
Sbjct: 319 TTDLAAIRYRTQEDGAQRILYVVDAGQGNHFAQVFQVAARAGWI-PEGVELTHVPFGVVQ 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KKFKTRSG+TV+L +LLDE + RS   L+ + +      TE  +    + V  G +
Sbjct: 378 GEDGKKFKTRSGETVRLKDLLDEAVTRSRVDLETRIQTEGREETEEFIQTVAETVGIGAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  +Y+FS+DKML  +GNTA YLLYAY R+  I+R   I+
Sbjct: 438 KYADLSQNRTSNYIFSYDKMLALQGNTAPYLLYAYVRVQGISRKGTID 485



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 98/164 (59%), Gaps = 8/164 (4%)

Query: 956  QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL 1015
            + V  G +KYADLS NR  +Y+FS+DKML  +GNTA YLLYAY R+  I+R   I   DL
Sbjct: 430  ETVGIGAVKYADLSQNRTSNYIFSYDKMLALQGNTAPYLLYAYVRVQGISRKGTI---DL 486

Query: 1016 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1075
                    V L  + EF LAK LL++++V+  V RDL    LC+YL+++S  F++FYD C
Sbjct: 487  SQLGTDAAVHLGDDSEFTLAKHLLQLDEVVAEVARDLLPSRLCQYLFELSQKFNQFYDRC 546

Query: 1076 YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              ++ +   +     T RL+L + TA+ +K    +L I  + +M
Sbjct: 547  SVLQAEEPQR-----TSRLILCDLTARTLKLGLSLLGIAVLERM 585



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 56/113 (49%), Gaps = 26/113 (23%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSI-ASVVTSELATNPSLAKVIDKIEAAKP 105
           KFGDFQ N AMAL K  KDK     P  IA+ I A +  ++L   P         E A P
Sbjct: 38  KFGDFQANGAMALAKRLKDK-----PRAIAEKIVAHLEVTDLCEPP---------EIAGP 83

Query: 106 GFVNVFLSRVYAGEQMKDII------VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           GF+N+ L   Y   Q+  +       V  V  P      +V+VDFSSPNIA++
Sbjct: 84  GFINLRLKATYIEAQLNALTGDERLGVAAVAQPQ-----KVIVDFSSPNIAKE 131


>gi|409993960|ref|ZP_11277084.1| arginyl-tRNA ligase [Arthrospira platensis str. Paraca]
 gi|409935176|gb|EKN76716.1| arginyl-tRNA ligase [Arthrospira platensis str. Paraca]
          Length = 585

 Score =  305 bits (781), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 204/523 (39%), Positives = 290/523 (55%), Gaps = 63/523 (12%)

Query: 215 FTHAVQVAFPEL--GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIA 272
           F  A+  AF E   G     V S+N K    FGD+QCN AM+L K  K      NP  IA
Sbjct: 12  FETALTDAFGETVSGTDPLIVNSSNPK----FGDYQCNVAMSLTKKLK-----SNPRQIA 62

Query: 273 QSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPT 329
            +I   +  +   +P         E+A PGF+N+ L   Y   Q+   + +   G+ P  
Sbjct: 63  GTIIEHLQIDDICSPP--------EIAGPGFINLRLKSEYLETQLNAKLTDPRLGIAPNR 114

Query: 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
             +K  V+VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ GH V+RLNHVGDWGTQFGM
Sbjct: 115 DPQK--VIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFEGHQVLRLNHVGDWGTQFGM 172

Query: 390 LIAHLQDKFPDYLTKSP--PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           LI++LQ+K+P  LT +    I DL  FY+++KKRFDEDE FK+ + + VV LQ    D +
Sbjct: 173 LISYLQEKYPSALTTADVLDIGDLVEFYRQAKKRFDEDEEFKEASREQVVRLQSGSEDSR 232

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW 507
           +AWE++CD SRR+FQ+IYDRL++ LTERGESFY   + ++V  LE  GLL  D G K ++
Sbjct: 233 RAWELLCDQSRREFQQIYDRLDIKLTERGESFYNPMLAEVVADLEASGLLVEDQGAKCVF 292

Query: 508 GE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF--- 559
            E     +   +P+ + KS+GG+ Y T+DLAA+R RI  E A  ++YVTD GQ  HF   
Sbjct: 293 LEGFTNKEGDPLPLIVQKSNGGYNYATTDLAAVRHRINTEGATRLIYVTDAGQANHFAQV 352

Query: 560 -RLLEESTIIGDTI--------------SRLLEYLGHDVVRLNHVGDWGTQFGM--LIAH 602
            ++      I D +               + L+    + VRL  + D   +     L   
Sbjct: 353 WQVARRVGWIPDGVDVVHVPFGLVKGEDGKKLKTRSGETVRLRDLLDEAVKRAQEDLETR 412

Query: 603 LQD----KFPDYLTKSPPIADLQAF-YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK- 656
           LQ     + P+++     +  + A  Y +  +    D IF   ++  +++LQ     Y  
Sbjct: 413 LQQEGRAESPEFVHHVAEVVGIDAVKYADLSQNRTSDYIF---SFDKMLSLQGNTAPYML 469

Query: 657 KAWEMICDVSRR---DFQKIYDRLNVTLTERGESFYQKHMEQL 696
            A+  I  +SR+   DF+++ DR ++ L +  E    KH+ QL
Sbjct: 470 YAYVRIQGISRKGSIDFEQVGDRASIHLQDPSELTLAKHLLQL 512



 Score =  280 bits (716), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 155/350 (44%), Positives = 210/350 (60%), Gaps = 52/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD I+R+LE+ GH V+RLNHVGDWGTQFGMLI++LQ+K+P  LT +    I DL  
Sbjct: 139 STIIGDCIARILEFEGHQVLRLNHVGDWGTQFGMLISYLQEKYPSALTTADVLDIGDLVE 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++KKRFDEDE FK+ + + VV LQ    D ++AWE++CD SRR+FQ+IYDRL++ LT
Sbjct: 199 FYRQAKKRFDEDEEFKEASREQVVRLQSGSEDSRRAWELLCDQSRREFQQIYDRLDIKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + ++V  LE  G L              T K G                 
Sbjct: 259 ERGESFYNPMLAEVVADLEASGLLVEDQGAKCVFLEGFTNKEGDPLPLIVQKSNGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++YVTD GQ  HF  + + A++ G + P+   +  V FG+V 
Sbjct: 319 TTDLAAVRHRINTEGATRLIYVTDAGQANHFAQVWQVARRVGWI-PDGVDVVHVPFGLVK 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT--ELTPTELSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLDE ++R+ + L+ + +      +P  +    + V    +
Sbjct: 378 GEDGKKLKTRSGETVRLRDLLDEAVKRAQEDLETRLQQEGRAESPEFVHHVAEVVGIDAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NR  DY+FSFDKML  +GNTA Y+LYAY RI  I+R   I+ E
Sbjct: 438 KYADLSQNRTSDYIFSFDKMLSLQGNTAPYMLYAYVRIQGISRKGSIDFE 487



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 8/173 (4%)

Query: 947  TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006
            +P  +    + V    +KYADLS NR  DY+FSFDKML  +GNTA Y+LYAY RI  I+R
Sbjct: 421  SPEFVHHVAEVVGIDAVKYADLSQNRTSDYIFSFDKMLSLQGNTAPYMLYAYVRIQGISR 480

Query: 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST 1066
               I+ E +        + L+   E  LAK LL++++V+  V ++L  + LC+YL+++S 
Sbjct: 481  KGSIDFEQV---GDRASIHLQDPSELTLAKHLLQLHEVIDAVAQELLPNRLCQYLFELSQ 537

Query: 1067 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             F++FYD C  ++ D     +   + RL L   TA+ ++    +L I  + +M
Sbjct: 538  KFNQFYDRCPVLKAD-----ECDRSSRLALCHLTAETLRLGLSLLGISVLDRM 585



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 24/139 (17%)

Query: 19  FTHAVQVAFPEL--GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIA 76
           F  A+  AF E   G     V S+N K    FGD+QCN AM+L K       K NP  IA
Sbjct: 12  FETALTDAFGETVSGTDPLIVNSSNPK----FGDYQCNVAMSLTKKL-----KSNPRQIA 62

Query: 77  QSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQPPT 133
            +I   +  +   +P         E A PGF+N+ L   Y   Q+   + +   G+ P  
Sbjct: 63  GTIIEHLQIDDICSPP--------EIAGPGFINLRLKSEYLETQLNAKLTDPRLGIAPNR 114

Query: 134 LNKKLRVLVDFSSPNIARK 152
             +K  V+VDFSSPNIA++
Sbjct: 115 DPQK--VIVDFSSPNIAKE 131


>gi|145481313|ref|XP_001426679.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393755|emb|CAK59281.1| unnamed protein product [Paramecium tetraurelia]
          Length = 600

 Score =  305 bits (780), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 176/437 (40%), Positives = 263/437 (60%), Gaps = 33/437 (7%)

Query: 199 VPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKI 258
           + V+   SV+  +       V  AFP L   +  +   +      F +++    + +   
Sbjct: 4   IGVNTLRSVQKLIKSAMKTRVLTAFPNLPQNSFEIQLESISNNLNF-EYKTPTVIRIFNQ 62

Query: 259 FKDK---GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGE 315
           FK +   G+ K   ++AQ +AS   +E   N     VI K+E    GF+N+ L+  +  E
Sbjct: 63  FKKQNLFGDLKTEVEVAQKVAS---TECQDN-----VIQKVEAIDKGFLNIQLNDKFIEE 114

Query: 316 QIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
           +I  ++VNG++ P L KK +V VDFSSPNIAKEMHVGHLRSTI+G+++ R+LE+ G +VV
Sbjct: 115 EINALLVNGLKFP-LEKKQKVAVDFSSPNIAKEMHVGHLRSTILGESLCRILEFQGQEVV 173

Query: 376 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQC 435
           R+NH+GDWGTQFGMLI HL +++PDY T  P + +L+  YKE+KK+FD +E FK ++ Q 
Sbjct: 174 RINHIGDWGTQFGMLINHLLEEYPDYQTNRPALKELEDLYKEAKKKFDSNEEFKVKSQQF 233

Query: 436 VVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKG 495
           VV LQ  DP    AW+MIC++SR+++ KIY RLNV +TE GES+Y   + ++V   E KG
Sbjct: 234 VVKLQALDPICIDAWKMICELSRQEYNKIYQRLNVKITEYGESYYNPILNEIVKECEAKG 293

Query: 496 LLELDDGRKIMW--GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
           ++ELD G KI+   GE    +P+ IVK DGG+ YDT+D+AA + RI E K D ++Y+TD+
Sbjct: 294 IVELDQGAKIIRVKGE---KVPLMIVKKDGGYNYDTTDMAAAKTRILEWKCDRLLYLTDV 350

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 613
           GQ  HF+L+ E        ++L+ +       + H+G     FG+++     KF    T+
Sbjct: 351 GQWNHFKLVFEG-------AKLMGWHQPPNTSMEHMG-----FGLVLGPDGKKFK---TR 395

Query: 614 SPPIADLQAFYKESKKR 630
           S     L     E+K+R
Sbjct: 396 SGDTVKLIDLLDEAKER 412



 Score =  289 bits (739), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 153/347 (44%), Positives = 210/347 (60%), Gaps = 51/347 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STI+G+++ R+LE+ G +VVR+NH+GDWGTQFGMLI HL +++PDY T  P + +L+  Y
Sbjct: 154 STILGESLCRILEFQGQEVVRINHIGDWGTQFGMLINHLLEEYPDYQTNRPALKELEDLY 213

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KE+KK+FD +E FK ++ Q VV LQ  DP    AW+MIC++SR+++ KIY RLNV +TE 
Sbjct: 214 KEAKKKFDSNEEFKVKSQQFVVKLQALDPICIDAWKMICELSRQEYNKIYQRLNVKITEY 273

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GES+Y   + ++V   E KG                   L + KK G             
Sbjct: 274 GESYYNPILNEIVKECEAKGIVELDQGAKIIRVKGEKVPLMIVKKDGGYNYDTTDMAAAK 333

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++Y+TD+GQ  HF+L+ E AK  G   P  T M+ +GFG+VLG D KKFK
Sbjct: 334 TRILEWKCDRLLYLTDVGQWNHFKLVFEGAKLMGWHQPPNTSMEHMGFGLVLGPDGKKFK 393

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRH----------TELTPTELSEAQQAVAYGCI 813
           TRSGDTVKL +LLDE   R+L +++ + +           T L+P E   A + +    I
Sbjct: 394 TRSGDTVKLIDLLDEAKERALKQIQQRVQENQQGKEFSTGTALSPEEFETAAERMGIAAI 453

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           KY DL  NR  DY F +DKMLD +GNTAVYL+Y+Y R+ SI R +GI
Sbjct: 454 KYYDLKQNRISDYNFDYDKMLDPKGNTAVYLMYSYVRMLSILRKSGI 500



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 111/209 (53%), Gaps = 21/209 (10%)

Query: 912  RGVGRGQEEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 971
            R + + Q+ VQ++ +G          K+ +  T L+P E   A + +    IKY DL  N
Sbjct: 412  RALKQIQQRVQENQQG----------KEFSTGTALSPEEFETAAERMGIAAIKYYDLKQN 461

Query: 972  RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKE 1031
            R  DY F +DKMLD +GNTAVYL+Y+Y R+ SI R +GI  +D  V        + H+ E
Sbjct: 462  RISDYNFDYDKMLDPKGNTAVYLMYSYVRMLSILRKSGI--QDFEVFKADHKFKITHQHE 519

Query: 1032 FALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHT 1091
              LA  LLR  DVL  VT  L ++ LC+Y+YDI    +E Y N Y I  D        HT
Sbjct: 520  RHLAAQLLRFVDVLQSVTDQLAINWLCDYIYDICVKIAEAY-NQYRILNDE-------HT 571

Query: 1092 -GRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              RLLL EA   V+ + F ++ I  + K+
Sbjct: 572  QTRLLLCEAVRMVLLQSFYLVGIEPIEKI 600



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 13/153 (8%)

Query: 3   VPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKI 62
           + V    SV+  +       V  AFP L   +  +   +      F +++    + +   
Sbjct: 4   IGVNTLRSVQKLIKSAMKTRVLTAFPNLPQNSFEIQLESISNNLNF-EYKTPTVIRIFNQ 62

Query: 63  FKDK---GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGE 119
           FK +   G+ K   ++AQ +AS   +E   N     VI K+EA   GF+N+ L+  +  E
Sbjct: 63  FKKQNLFGDLKTEVEVAQKVAS---TECQDN-----VIQKVEAIDKGFLNIQLNDKFIEE 114

Query: 120 QMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++  ++VNG++ P L KK +V VDFSSPNIA++
Sbjct: 115 EINALLVNGLKFP-LEKKQKVAVDFSSPNIAKE 146


>gi|425466530|ref|ZP_18845828.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9809]
 gi|389830943|emb|CCI26739.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9809]
          Length = 585

 Score =  305 bits (780), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 157/335 (46%), Positives = 220/335 (65%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K  +             V + L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQKPRE-------------VATTLLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I  N +     N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQPPEIAGPGFINLTLKPGYLETQLKDLITDNRLGVAAANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  L+++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLEAVIRELDQQGLLTEDNGALCVFLDGFTNKEGEPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ ++KA  I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVRQDKAARIIYVTDAGQANHF 349



 Score =  299 bits (766), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 166/364 (45%), Positives = 221/364 (60%), Gaps = 56/364 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +
Sbjct: 136 HLR----STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADAL 191

Query: 618 --ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
              DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD
Sbjct: 192 DLGDLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG---------- 713
            L++ LTERGESFY  ++E ++  L+++G L+             T K G          
Sbjct: 252 ILDIKLTERGESFYNPYLEAVIRELDQQGLLTEDNGALCVFLDGFTNKEGEPLPLIVKKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKAG L P+   +  
Sbjct: 312 DGGYNYATTDLAAICYRVRQDKAARIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQ 806
           V FG+VLGED KK KTRSG+TVKL ELLD+ +  SL  L+ +    E   T+  +++  +
Sbjct: 371 VAFGLVLGEDGKKLKTRSGETVKLQELLDQAIACSLADLEKRLASEEREETDDFIAKTAE 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +D  
Sbjct: 431 TVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQDLS 490

Query: 867 EPDP 870
              P
Sbjct: 491 ANSP 494



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 110/169 (65%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            +++  + V    +KYADLS NRN +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GI
Sbjct: 425  IAKTAETVGLSAVKYADLSQNRNSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            N +DL   + ++P+ L+ E E  LAK LL++ +V+  V  DL  + LC+YLY++S  ++ 
Sbjct: 485  NFQDL---SANSPLILKDESELILAKQLLQLPEVISAVEEDLLPNRLCDYLYELSKKYNR 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  + K AE     + T RL+L + TA+ +K    +L I  + +M
Sbjct: 542  FYENCPVL-KAAE----PIKTSRLVLCDLTARTLKLGLSLLGIPVLERM 585



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K  +             V + L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQKPRE-------------VATTLLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I  N +     N   +++VDFSSPNIA++
Sbjct: 75  CQPPEIAGPGFINLTLKPGYLETQLKDLITDNRLGVAAANPSQKIIVDFSSPNIAKE 131


>gi|425441303|ref|ZP_18821581.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9717]
 gi|389718017|emb|CCH97970.1| Arginyl-tRNA synthetase [Microcystis aeruginosa PCC 9717]
          Length = 585

 Score =  305 bits (780), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/335 (47%), Positives = 222/335 (66%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVATT--------LLKNLEIDDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               E+A PGF+N+ L   Y   Q+KD+I  N +     N   +++VDFSSPNIAKEMHV
Sbjct: 75  CQTPEIAGPGFINLTLKPGYLETQLKDLITDNRLGVAAANPSQKIIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
           GHLRSTIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++    + 
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
           + LTERGESFY  ++E ++  L+++GLL  D+G   ++      ++   +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLEAVIRELDQQGLLTEDNGALCVFLDGFTNKEGDPLPLIVKKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAAI  R+ ++KA  I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAAICYRVRQDKAARIIYVTDAGQANHF 349



 Score =  296 bits (759), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 163/357 (45%), Positives = 219/357 (61%), Gaps = 52/357 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+  H V+RLNHVGDWGTQFGMLI +LQ+ +P  LT++  +   DL +
Sbjct: 139 STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K RFDEDE FK+ A Q VV LQ  DP  ++AW+++C  SRR+FQKIYD L++ LT
Sbjct: 199 FYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILDIKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG----------------- 713
           ERGESFY  ++E ++  L+++G L+             T K G                 
Sbjct: 259 ERGESFYNPYLEAVIRELDQQGLLTEDNGALCVFLDGFTNKEGDPLPLIVKKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + AKKAG L P+   +  V FG+VL
Sbjct: 319 TTDLAAICYRVRQDKAARIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVHVAFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQAVAYGCI 813
           GED KK KTRSG+TVKL ELLD+ +  SL  L+ +  +   E T   +++  + V    +
Sbjct: 378 GEDGKKLKTRSGETVKLQELLDQAIACSLADLEKRLASEEREETGDFIAKTAETVGLSAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDP 870
           KYADLS NR+ +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GIN +D     P
Sbjct: 438 KYADLSQNRHSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQDLSANSP 494



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 110/169 (65%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            +++  + V    +KYADLS NR+ +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R  GI
Sbjct: 425  IAKTAETVGLSAVKYADLSQNRHSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            N +DL   + ++P+ L+ E E  LAK LL++ +V+  V  DL  + LC+YLY++S  ++ 
Sbjct: 485  NFQDL---SANSPLILKDESELILAKQLLQLPEVISAVEEDLLPNRLCDYLYELSKKYNR 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  + K AE     + T RL+L + TA+ +K    +L I  + +M
Sbjct: 542  FYENCPVL-KAAE----PIKTSRLVLCDLTARTLKLGLYLLGIPVLERM 585



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N +    FGD+QCN +++L K  K K     P ++A +        L  N  +  +
Sbjct: 32  VAASNPR----FGDYQCNISLSLAKELKQK-----PREVATT--------LLKNLEIDDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
               E A PGF+N+ L   Y   Q+KD+I  N +     N   +++VDFSSPNIA++
Sbjct: 75  CQTPEIAGPGFINLTLKPGYLETQLKDLITDNRLGVAAANPSQKIIVDFSSPNIAKE 131


>gi|403224077|dbj|BAM42207.1| arginyl-tRNA synthetase [Theileria orientalis strain Shintoku]
          Length = 763

 Score =  304 bits (779), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/401 (40%), Positives = 248/401 (61%), Gaps = 35/401 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q +DAM+L K+ KD     +P ++A+ + S +TS+             I ++  G
Sbjct: 200 KFGDYQWSDAMSLFKLAKDHLTVGSPKELAEMVKSNITSD---------SFSSINISPQG 250

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+   LS  +  ++++ +  NG     ++K  RV++DFSSPNIAKEMHVGHLRST+IGD+
Sbjct: 251 FMTFVLSNKWIEQELRSLAENGPSVKQVDKGTRVVIDFSSPNIAKEMHVGHLRSTVIGDS 310

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           +SR+LE+ G+DV R+NH+GDWGTQFGMLI ++ +K+PD+++  P I+DL  FYKE+K R 
Sbjct: 311 LSRVLEFYGYDVRRINHLGDWGTQFGMLIEYMFEKYPDFMSNMPSISDLTKFYKEAKLRM 370

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQK 482
           D DE FK R+ + VV LQ  + + ++ W+++CD+S   F KIY RL + L   GESFY  
Sbjct: 371 DADEEFKNRSRRRVVKLQSGEEESRQVWKVLCDISLASFDKIYSRLGIRLENYGESFYND 430

Query: 483 HMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEE 542
            +  ++  L++KG+     G  +++  D  + P+ +VKSDGGF YDT+DLA ++ RI E 
Sbjct: 431 MIPDVIRELKEKGIAVESQGAIVVF-TDVSAAPLMLVKSDGGFGYDTTDLACLKYRIFEM 489

Query: 543 KADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAH 602
           K++WI+YVTD+GQ  HF+ L ++                D VR++HVG     FGM+   
Sbjct: 490 KSNWIIYVTDIGQSDHFKKLFKT----------------DDVRIDHVG-----FGMVQNE 528

Query: 603 LQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQ 643
             +KF    T+S     L     E+ KR  ++E+ K++  Q
Sbjct: 529 FGEKFK---TRSGDTVKLIDLLDEAVKR-SKEELIKRQPDQ 565



 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 144/344 (41%), Positives = 202/344 (58%), Gaps = 54/344 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD++SR+LE+ G+DV R+NH+GDWGTQFGMLI ++ +K+PD+++  P I+DL  FY
Sbjct: 304 STVIGDSLSRVLEFYGYDVRRINHLGDWGTQFGMLIEYMFEKYPDFMSNMPSISDLTKFY 363

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KE+K R D DE FK R+ + VV LQ  + + ++ W+++CD+S   F KIY RL + L   
Sbjct: 364 KEAKLRMDADEEFKNRSRRRVVKLQSGEEESRQVWKVLCDISLASFDKIYSRLGIRLENY 423

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFY   +  ++  L++KG                   L L K  G             
Sbjct: 424 GESFYNDMIPDVIRELKEKGIAVESQGAIVVFTDVSAAPLMLVKSDGGFGYDTTDLACLK 483

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YVTD+GQ  HF+ L            +  R+D VGFG+V  E  +KFK
Sbjct: 484 YRIFEMKSNWIIYVTDIGQSDHFKKL---------FKTDDVRIDHVGFGMVQNEFGEKFK 534

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTVKL +LLDE ++RS ++L  +    +     L    +A+ YG IKY DL+H+ +
Sbjct: 535 TRSGDTVKLIDLLDEAVKRSKEELIKRQPDQK----NLQRTAEALGYGSIKYFDLNHSVH 590

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
            +Y FSFDKMLD RGNTAVY+LY+Y RI  I + A  ++ D  E
Sbjct: 591 SNYKFSFDKMLDPRGNTAVYMLYSYARICQIFKKASTSNADLNE 634



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 41/203 (20%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            L    +A+ YG IKY DL+H+ + +Y FSFDKMLD RGNTAVY+LY+Y RI  I + A  
Sbjct: 568  LQRTAEALGYGSIKYFDLNHSVHSNYKFSFDKMLDPRGNTAVYMLYSYARICQIFKKAST 627

Query: 1011 NSEDLR-------------------VAAQSTP---------------VSLEHEKEFALAK 1036
            ++ DL                    V+A ++P               +++EH  EF+LAK
Sbjct: 628  SNADLNEACEHTEGQLSDNFNNQLSVSATASPDCVEDVAHKVDDLSKLTIEHPTEFSLAK 687

Query: 1037 TLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLL 1096
             LL+   ++  + +DL ++ L +YLY+IS  FS FY  C  +   ++         RL+L
Sbjct: 688  CLLKFPAIMDQIHKDLSINKLTDYLYEISVQFSSFYTQCKVVGDPSQD-------SRLIL 740

Query: 1097 AEATAKVMKKCFDILNIRTVHKM 1119
               T  VMK CF+++ I  + ++
Sbjct: 741  CTCTKLVMKTCFNLIGIEPLERI 763



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 9/106 (8%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q +DAM+L K+ KD     +P ++A+ + S +TS+             I  +  G
Sbjct: 200 KFGDYQWSDAMSLFKLAKDHLTVGSPKELAEMVKSNITSD---------SFSSINISPQG 250

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+   LS  +  ++++ +  NG     ++K  RV++DFSSPNIA++
Sbjct: 251 FMTFVLSNKWIEQELRSLAENGPSVKQVDKGTRVVIDFSSPNIAKE 296


>gi|15618481|ref|NP_224766.1| arginyl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|15836101|ref|NP_300625.1| arginyl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|16752468|ref|NP_444730.1| arginyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33241923|ref|NP_876864.1| arginyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|7674357|sp|Q9Z7Y3.1|SYR_CHLPN RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|4376863|gb|AAD18710.1| Arginyl tRNA Transferase [Chlamydophila pneumoniae CWL029]
 gi|7189110|gb|AAF38053.1| arginyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|8978941|dbj|BAA98776.1| arginyl tRNA transferase [Chlamydophila pneumoniae J138]
 gi|33236433|gb|AAP98521.1| arginyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
          Length = 561

 Score =  304 bits (779), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/360 (45%), Positives = 230/360 (63%), Gaps = 28/360 (7%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           LS + + A+  AFP L D    +  + +++   FG +QCNDAM L ++ K     K P  
Sbjct: 8   LSVICSQAIAKAFPNLEDWAPEITPSTKEH---FGHYQCNDAMKLARVLK-----KAP-- 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI---KDIIVNGVQP 327
             ++IA  + +EL   P        IE+A  GF+N   S V+  +Q+   KD +  G Q 
Sbjct: 58  --RAIAEAIVAELPQEP-----FSLIEIAGAGFINFTFSPVFLNQQLEHFKDALKLGFQ- 109

Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
             +++  ++++DFSSPNIAK+MHVGHLRSTIIGD+++R+  Y+GHDV+RLNH+GDWGT F
Sbjct: 110 --VSQPKKIIIDFSSPNIAKDMHVGHLRSTIIGDSLARIFSYVGHDVLRLNHIGDWGTAF 167

Query: 388 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           GMLI +LQ+   DY      + DL + YK++   F  DE FKKR+ Q VVALQ  DP   
Sbjct: 168 GMLITYLQENPCDY----SDLEDLTSLYKKAYVCFTNDEEFKKRSQQNVVALQAKDPQAI 223

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW 507
             WE IC+ S + FQKIYD L++ + +RGESFY   + +++  LEKKGLL + +  K ++
Sbjct: 224 AIWEKICETSEKAFQKIYDILDIVVEKRGESFYNPFLPEIIEDLEKKGLLTVSNDAKCVF 283

Query: 508 GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTI 567
            E   SIP  + KSDGG+ Y T+DLAA+R RIEE+ AD I+ VTDLGQ +HF+LLE + I
Sbjct: 284 HE-AFSIPFMVQKSDGGYNYATTDLAAMRYRIEEDHADKIIIVTDLGQSLHFQLLEATAI 342



 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/347 (43%), Positives = 196/347 (56%), Gaps = 52/347 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++R+  Y+GHDV+RLNH+GDWGT FGMLI +LQ+   DY      + DL + Y
Sbjct: 136 STIIGDSLARIFSYVGHDVLRLNHIGDWGTAFGMLITYLQENPCDY----SDLEDLTSLY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++   F  DE FKKR+ Q VVALQ  DP     WE IC+ S + FQKIYD L++ + +R
Sbjct: 192 KKAYVCFTNDEEFKKRSQQNVVALQAKDPQAIAIWEKICETSEKAFQKIYDILDIVVEKR 251

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + +++  LEKKG L+++     V+                            
Sbjct: 252 GESFYNPFLPEIIEDLEKKGLLTVSNDAKCVFHEAFSIPFMVQKSDGGYNYATTDLAAMR 311

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTDLGQ +HF+LLE  A  AG L P       VGFG+VL    KK K
Sbjct: 312 YRIEEDHADKIIIVTDLGQSLHFQLLEATAIAAGYLQPGI--FSHVGFGLVLDPQGKKLK 369

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ VKL ELLD  + ++ + L++     ELT   + E    +    IKY+DLS +R 
Sbjct: 370 TRSGENVKLRELLDTAIEKAEEALRE--HRPELTDEAIQERAPVIGINAIKYSDLSSHRT 427

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS---EDPPE 867
            DYVFSF+KML   GNTA++LLYAY RI  I R  GI+    E PPE
Sbjct: 428 SDYVFSFEKMLRFEGNTAMFLLYAYVRIQGIKRRLGISQLSLEGPPE 474



 Score = 93.6 bits (231), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            +    ELT   + E    +    IKY+DLS +R  DYVFSF+KML   GNTA++LLYAY 
Sbjct: 394  REHRPELTDEAIQERAPVIGINAIKYSDLSSHRTSDYVFSFEKMLRFEGNTAMFLLYAYV 453

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI  I R  GI+   L       P  ++   E  LA TLLR  + L    ++LC H L +
Sbjct: 454  RIQGIKRRLGISQLSLE-----GPPEIQEPAEELLALTLLRFPEALESTIKELCPHFLTD 508

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY+++  F+ F+       +D+  +       RL L     +V+     +L ++T+ ++
Sbjct: 509  YLYNLTHKFNGFF-------RDSHIQDSPYAKSRLFLCALAEQVLATGMHLLGLKTLERL 561



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 23/140 (16%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           LS + + A+  AFP L D    +  + +++   FG +QCNDAM L ++      KK P  
Sbjct: 8   LSVICSQAIAKAFPNLEDWAPEITPSTKEH---FGHYQCNDAMKLARVL-----KKAP-- 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM---KDIIVNGVQP 131
             ++IA  + +EL   P        IE A  GF+N   S V+  +Q+   KD +  G Q 
Sbjct: 58  --RAIAEAIVAELPQEP-----FSLIEIAGAGFINFTFSPVFLNQQLEHFKDALKLGFQ- 109

Query: 132 PTLNKKLRVLVDFSSPNIAR 151
             +++  ++++DFSSPNIA+
Sbjct: 110 --VSQPKKIIIDFSSPNIAK 127


>gi|67921649|ref|ZP_00515167.1| Arginyl-tRNA synthetase, class Ic [Crocosphaera watsonii WH 8501]
 gi|416385491|ref|ZP_11684788.1| Arginyl-tRNA synthetase [Crocosphaera watsonii WH 0003]
 gi|67856761|gb|EAM52002.1| Arginyl-tRNA synthetase, class Ic [Crocosphaera watsonii WH 8501]
 gi|357264871|gb|EHJ13703.1| Arginyl-tRNA synthetase [Crocosphaera watsonii WH 0003]
          Length = 585

 Score =  304 bits (779), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/362 (45%), Positives = 233/362 (64%), Gaps = 23/362 (6%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           S+ + L+  F  A+  +F E         +T     H  GD+Q N A+ L K        
Sbjct: 3   SINEQLTKKFQEALVTSFGEDFQAIDPQVTTARDLRH--GDYQANIALPLAKKLG----- 55

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NG 324
           KNP +IAQ+I S        N ++  + +   +  PGF+N+ L   Y   ++K +    G
Sbjct: 56  KNPREIAQTIIS--------NLAVDTICETPTIGGPGFINLKLKPNYLENKLKSLYQEQG 107

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           +    +    +V+VDFSSPNIAKEMHVGHLRSTIIGD I+R LE+LG+DV+RLNHVGDWG
Sbjct: 108 LGIEKIPDSTQVIVDFSSPNIAKEMHVGHLRSTIIGDCIARTLEFLGYDVLRLNHVGDWG 167

Query: 385 TQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           TQFGMLI +L++ +PD LT++    I DL  FYK++KKRFDED  F++RA + VV LQ  
Sbjct: 168 TQFGMLITYLKEVYPDALTQADALEIGDLVNFYKQAKKRFDEDTEFQQRAREAVVKLQSG 227

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           + +  +AWE++CD SRR+FQ+IYDRL+V LTERGESFY  +++ ++  L+ +G+L+ D G
Sbjct: 228 EQESSQAWELLCDQSRREFQQIYDRLDVKLTERGESFYNPYLDDVITALDAEGILKKDQG 287

Query: 503 RKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGV 557
            + ++ E   +     +P+ + KSDGG+ Y T+DLAA+R RI+E++A  I+YVTD GQ  
Sbjct: 288 AQCVFLEGFTNKSGDPLPLIVQKSDGGYNYATTDLAALRYRIKEDQAKRIIYVTDAGQSN 347

Query: 558 HF 559
           HF
Sbjct: 348 HF 349



 Score =  287 bits (734), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 160/361 (44%), Positives = 218/361 (60%), Gaps = 56/361 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP- 616
           H R    STIIGD I+R LE+LG+DV+RLNHVGDWGTQFGMLI +L++ +PD LT++   
Sbjct: 136 HLR----STIIGDCIARTLEFLGYDVLRLNHVGDWGTQFGMLITYLKEVYPDALTQADAL 191

Query: 617 -IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
            I DL  FYK++KKRFDED  F++RA + VV LQ  + +  +AWE++CD SRR+FQ+IYD
Sbjct: 192 EIGDLVNFYKQAKKRFDEDTEFQQRAREAVVKLQSGEQESSQAWELLCDQSRREFQQIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------- 713
           RL+V LTERGESFY  +++ ++  L+ +G L              T K G          
Sbjct: 252 RLDVKLTERGESFYNPYLDDVITALDAEGILKKDQGAQCVFLEGFTNKSGDPLPLIVQKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + A KA  L P+   +  
Sbjct: 312 DGGYNYATTDLAALRYRIKEDQAKRIIYVTDAGQSNHFAQVFQVANKANFL-PDTVEVTH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQ 806
           V FG+V GED KK KTRSG+T+KL +LL+E +  +   L+++ +  E   +E  ++   Q
Sbjct: 371 VPFGLVKGEDGKKLKTRSGETIKLKDLLNEAINYARKDLENRLQSEERKESEDFINNVAQ 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V    +KYADLS NR+ DY+FS+DKML  +GNTA Y+LYAY RI SI+R   I+ E+  
Sbjct: 431 TVGISAVKYADLSQNRSSDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNIDYENLG 490

Query: 867 E 867
           E
Sbjct: 491 E 491



 Score =  130 bits (326), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   Q V    +KYADLS NR+ DY+FS+DKML  +GNTA Y+LYAY RI SI+R   I
Sbjct: 425  INNVAQTVGISAVKYADLSQNRSSDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            + E+L    ++  + L+ + E  L K LL++++ +  V + L  + LC+YLY++S  F+ 
Sbjct: 485  DYENL---GENIQIILKEDTEMELGKYLLQLSETIKEVEKTLLPNRLCDYLYELSKKFNR 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  ++ +   K     T RLLL + TAK +K    +L I  + +M
Sbjct: 542  FYENCPVLKSEEPTK-----TSRLLLCDLTAKTLKLGLSLLGISVLERM 585



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+ + L+  F  A+  +F E         +T     H  GD+Q N A+ L K        
Sbjct: 3   SINEQLTKKFQEALVTSFGEDFQAIDPQVTTARDLRH--GDYQANIALPLAKKLG----- 55

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NG 128
           KNP +IAQ+I S        N ++  + +      PGF+N+ L   Y   ++K +    G
Sbjct: 56  KNPREIAQTIIS--------NLAVDTICETPTIGGPGFINLKLKPNYLENKLKSLYQEQG 107

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           +    +    +V+VDFSSPNIA++
Sbjct: 108 LGIEKIPDSTQVIVDFSSPNIAKE 131


>gi|297738741|emb|CBI27986.3| unnamed protein product [Vitis vinifera]
          Length = 691

 Score =  304 bits (778), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/405 (41%), Positives = 235/405 (58%), Gaps = 60/405 (14%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           +V+  LS +F  ++++  P   D    +A+       KFGD+QCN+AM L    K+K  K
Sbjct: 66  TVKKQLSKLFEQSLRITVPSESDVEPLIAAC----APKFGDYQCNNAMGLWSRIKNK--K 119

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVA-------------------------- 299
            N F    +I  V+   L       ++I+K  +A                          
Sbjct: 120 DNGFKGPPTIGKVIMENLPP----TEMIEKCTLAGPGFVNIKLSTSXXXXXXXXXXXXXX 175

Query: 300 -------------------KPGFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLV 338
                               PGFVN+ LS  +  + I+ +++ G++   P L  K R +V
Sbjct: 176 XXXXXXXXXXXXXXXXXXXXPGFVNIKLSTSWIAKNIQKMLIIGIETWAPRLPIK-RAVV 234

Query: 339 DFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 398
           DFSSPNIAKEMHVGHLRSTIIGDT++R+LE+   DV+R NHVGDWGTQFGMLI  L DKF
Sbjct: 235 DFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSNVDVLRRNHVGDWGTQFGMLIEFLFDKF 294

Query: 399 PDYLTKSP-PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVS 457
           P++   S   I DLQ FYK SKKRFDED  FK RA Q VV LQ  +  Y++AW  IC++S
Sbjct: 295 PNWEHASAQAIGDLQEFYKASKKRFDEDPAFKGRAQQAVVRLQGGETSYRRAWAQICEIS 354

Query: 458 RRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMT 517
           R +F K+Y RL V L E+GESFY  ++  ++  L  +GL+E   G +++  E   +IP+ 
Sbjct: 355 RNEFNKVYQRLGVQLEEKGESFYNPYIPGVIEQLSNQGLVEESQGARVIHIEGV-NIPLI 413

Query: 518 IVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           +VKSDGG+ Y ++D+AA+  R+ EEKA+WI+YVTD+GQ  HF ++
Sbjct: 414 VVKSDGGYNYASTDMAALWYRLNEEKAEWIIYVTDVGQQQHFEMV 458



 Score =  290 bits (742), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/340 (46%), Positives = 203/340 (59%), Gaps = 45/340 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAF 623
           STIIGDT++R+LE+   DV+R NHVGDWGTQFGMLI  L DKFP++   S   I DLQ F
Sbjct: 252 STIIGDTLARMLEFSNVDVLRRNHVGDWGTQFGMLIEFLFDKFPNWEHASAQAIGDLQEF 311

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SKKRFDED  FK RA Q VV LQ  +  Y++AW  IC++SR +F K+Y RL V L E
Sbjct: 312 YKASKKRFDEDPAFKGRAQQAVVRLQGGETSYRRAWAQICEISRNEFNKVYQRLGVQLEE 371

Query: 684 RGESFYQKHMEQLVPYLEKKG----------------NLSLT------------------ 709
           +GESFY  ++  ++  L  +G                N+ L                   
Sbjct: 372 KGESFYNPYIPGVIEQLSNQGLVEESQGARVIHIEGVNIPLIVVKSDGGYNYASTDMAAL 431

Query: 710 -------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKT---RMDFVGFGVVLGEDR 759
                  K   I+YVTD+GQ  HF ++   AK AG L  N     +   VGFG+VLGED 
Sbjct: 432 WYRLNEEKAEWIIYVTDVGQQQHFEMVFSAAKLAGWLPANDNMYPKASHVGFGLVLGEDG 491

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TR+ + V+L +LLDE   RS   L ++ +  E T  EL    +AV YG +KYADL 
Sbjct: 492 KRFRTRNTEVVRLVDLLDEAKNRSKSVLIERGKAAEWTEQELEHTAEAVGYGAVKYADLK 551

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           +NR  +Y F+FD+ML+D+GNTAVYLLYA+ RI SI R +G
Sbjct: 552 NNRLTNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRKSG 591



 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 119/188 (63%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ +  E T  EL    +AV YG +KYADL +NR  +Y F+FD+ML+D+GNTA
Sbjct: 514  RSKSVLIERGKAAEWTEQELEHTAEAVGYGAVKYADLKNNRLTNYTFNFDQMLNDKGNTA 573

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +G + ++L+   ++  ++L+H+ E  L   LL+ ++V+     +
Sbjct: 574  VYLLYAHARICSIIRKSGKDIDELK---KTGVLTLDHDDERGLGLHLLQFSEVVEEACTN 630

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LCEYLY++S  F++FY NC  +    E       T RLLL EATA VM+KCF +L
Sbjct: 631  LLPNVLCEYLYNLSENFTKFYSNCQVVGSAEE-------TSRLLLCEATAVVMRKCFHLL 683

Query: 1112 NIRTVHKM 1119
             I  V+K+
Sbjct: 684  GITPVYKI 691



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 50/186 (26%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           +V+  LS +F  ++++  P   D    +A+       KFGD+QCN+AM L    K+K  K
Sbjct: 66  TVKKQLSKLFEQSLRITVPSESDVEPLIAAC----APKFGDYQCNNAMGLWSRIKNK--K 119

Query: 70  KNPFDIAQSIASVVTSELATNPSLAK--------VIDKIEAA------------------ 103
            N F    +I  V+   L     + K        V  K+  +                  
Sbjct: 120 DNGFKGPPTIGKVIMENLPPTEMIEKCTLAGPGFVNIKLSTSXXXXXXXXXXXXXXXXXX 179

Query: 104 ---------------KPGFVNVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSS 146
                           PGFVN+ LS  +  + ++ +++ G++   P L  K R +VDFSS
Sbjct: 180 XXXXXXXXXXXXXXXXPGFVNIKLSTSWIAKNIQKMLIIGIETWAPRLPIK-RAVVDFSS 238

Query: 147 PNIARK 152
           PNIA++
Sbjct: 239 PNIAKE 244


>gi|384449168|ref|YP_005661770.1| arginyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
 gi|269303449|gb|ACZ33549.1| arginyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 561

 Score =  304 bits (778), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/360 (45%), Positives = 231/360 (64%), Gaps = 28/360 (7%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           LS + + A+  AFP L D    +  + +++   FG +QCNDAM L ++ K     K P  
Sbjct: 8   LSVICSQAIAKAFPNLEDWAPEITPSTKEH---FGHYQCNDAMKLARVLK-----KAP-- 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI---KDIIVNGVQP 327
             ++IA  + +EL   P        IE+A  GF+N   S V+  +Q+   +D +  G Q 
Sbjct: 58  --RAIAEAIVAELPQEP-----FSLIEIAGAGFINFTFSPVFLNQQLEHFRDALKLGFQ- 109

Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
             +++  ++++DFSSPNIAK+MHVGHLRSTIIGD+++R+  Y+GHDV+RLNH+GDWGT F
Sbjct: 110 --VSQPKKIIIDFSSPNIAKDMHVGHLRSTIIGDSLARIFSYVGHDVLRLNHIGDWGTAF 167

Query: 388 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           GMLI++LQ+   DY      + DL + YK++   F  DE FKKR+ Q VVALQ  DP   
Sbjct: 168 GMLISYLQENPCDY----SDLEDLTSLYKKAYVCFTNDEEFKKRSQQNVVALQAKDPQAI 223

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW 507
             WE IC+ S + FQKIYD L++ + +RGESFY   + +++  LEKKGLL + +  K ++
Sbjct: 224 AIWEKICETSEKAFQKIYDILDIVVEKRGESFYNPFLPEIIEDLEKKGLLTVSNDAKCVF 283

Query: 508 GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTI 567
            E   SIP  + KSDGG+ Y T+DLAA+R RIEE+ AD I+ VTDLGQ +HF+LLE + I
Sbjct: 284 HE-AFSIPFMVQKSDGGYNYATTDLAAMRYRIEEDHADKIIIVTDLGQSLHFQLLEATAI 342



 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 151/347 (43%), Positives = 198/347 (57%), Gaps = 52/347 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++R+  Y+GHDV+RLNH+GDWGT FGMLI++LQ+   DY      + DL + Y
Sbjct: 136 STIIGDSLARIFSYVGHDVLRLNHIGDWGTAFGMLISYLQENPCDY----SDLEDLTSLY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++   F  DE FKKR+ Q VVALQ  DP     WE IC+ S + FQKIYD L++ + +R
Sbjct: 192 KKAYVCFTNDEEFKKRSQQNVVALQAKDPQAIAIWEKICETSEKAFQKIYDILDIVVEKR 251

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + +++  LEKKG L+++     V+                            
Sbjct: 252 GESFYNPFLPEIIEDLEKKGLLTVSNDAKCVFHEAFSIPFMVQKSDGGYNYATTDLAAMR 311

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTDLGQ +HF+LLE  A  AG L P       VGFG+VL    KK K
Sbjct: 312 YRIEEDHADKIIIVTDLGQSLHFQLLEATAIAAGYLQPGI--FSHVGFGLVLDPQGKKLK 369

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ VKL ELLD  + ++ + L++     ELT  E+ E    +    IKY+DLS +R 
Sbjct: 370 TRSGENVKLRELLDTAIEKAEEALRE--HRPELTDEEIQERAPVIGINAIKYSDLSSHRT 427

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS---EDPPE 867
            DYVFSF+KML   GNTA++LLYAY RI  I R  GI+    E PPE
Sbjct: 428 SDYVFSFEKMLRFEGNTAMFLLYAYVRIQGIKRRLGISQLSLEGPPE 474



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            +    ELT  E+ E    +    IKY+DLS +R  DYVFSF+KML   GNTA++LLYAY 
Sbjct: 394  REHRPELTDEEIQERAPVIGINAIKYSDLSSHRTSDYVFSFEKMLRFEGNTAMFLLYAYV 453

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI  I R  GI+   L       P  ++   E  LA TLLR  + L    ++LC H L +
Sbjct: 454  RIQGIKRRLGISQLSLE-----GPPEIQEPAEELLALTLLRFPEALESTIKELCPHFLTD 508

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY+++  F+ F+ +C+ I+     K       RL L   T +V+     +L ++T+ ++
Sbjct: 509  YLYNLTHKFNGFFRDCH-IQDSPYAK------SRLFLCALTEQVLATGMHLLGLKTLERL 561



 Score = 70.1 bits (170), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 23/140 (16%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           LS + + A+  AFP L D    +  + +++   FG +QCNDAM L ++      KK P  
Sbjct: 8   LSVICSQAIAKAFPNLEDWAPEITPSTKEH---FGHYQCNDAMKLARVL-----KKAP-- 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM---KDIIVNGVQP 131
             ++IA  + +EL   P        IE A  GF+N   S V+  +Q+   +D +  G Q 
Sbjct: 58  --RAIAEAIVAELPQEP-----FSLIEIAGAGFINFTFSPVFLNQQLEHFRDALKLGFQ- 109

Query: 132 PTLNKKLRVLVDFSSPNIAR 151
             +++  ++++DFSSPNIA+
Sbjct: 110 --VSQPKKIIIDFSSPNIAK 127


>gi|209523094|ref|ZP_03271650.1| arginyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|423066408|ref|ZP_17055198.1| arginyl-tRNA synthetase [Arthrospira platensis C1]
 gi|209496245|gb|EDZ96544.1| arginyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|406712080|gb|EKD07271.1| arginyl-tRNA synthetase [Arthrospira platensis C1]
          Length = 600

 Score =  303 bits (777), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 203/523 (38%), Positives = 287/523 (54%), Gaps = 63/523 (12%)

Query: 215 FTHAVQVAFPEL--GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIA 272
           F  A+  AF E   G     V S+N K    FGD+QCN AM+L K  K      NP  IA
Sbjct: 27  FETALTDAFGETVSGTDPLIVNSSNPK----FGDYQCNVAMSLTKRLK-----SNPRQIA 77

Query: 273 QSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPT 329
            +I   +  +   +P         E+A PGF+N+ L   Y   Q+   + +   G+ P  
Sbjct: 78  STIIEHLQIDDICSPP--------EIAGPGFINLRLKSEYLETQLNAKLTDPRLGIAPN- 128

Query: 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
                 V+VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ GH V+RLNHVGDWGTQFGM
Sbjct: 129 -GNPQNVIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFEGHQVLRLNHVGDWGTQFGM 187

Query: 390 LIAHLQDKFPDYLTKSP--PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           LI +LQ+K+P  LT +    I DL  FY+++KKRFDEDE FK+ + + VV LQ    D +
Sbjct: 188 LITYLQEKYPSALTTADVLDIGDLVEFYRQAKKRFDEDEEFKEASREQVVRLQSGAEDSR 247

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW 507
           +AWE++CD SRR+FQ+IYDRL++ LTERGESFY   + ++V  LE  GLL  D G K ++
Sbjct: 248 RAWELLCDQSRREFQQIYDRLDIKLTERGESFYNPMLAEVVADLEASGLLVEDQGAKCVF 307

Query: 508 GE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF--- 559
            E     +   +P+ + KS+GG+ Y T+DLAA+R RI  E A  ++YVTD GQ  HF   
Sbjct: 308 LEGFTNKEGDPLPLIVQKSNGGYNYATTDLAAVRHRINTEGATRLIYVTDAGQANHFAQV 367

Query: 560 -RLLEESTIIGDTI--------------SRLLEYLGHDVVRLNHVGDWGTQFGM--LIAH 602
            ++      I D +               + L+    + VRL  + D   +     L   
Sbjct: 368 WQVARRVGWIPDGVDVVHVPFGLVKGEDGKKLKTRSGETVRLRDLLDEAVKRAQEDLETR 427

Query: 603 LQD----KFPDYLTKSPPIADLQAF-YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK- 656
           LQ     + P+++     +  + A  Y +  +    D IF   ++  +++LQ     Y  
Sbjct: 428 LQQEGRAESPEFVHHVAEVVGIDAVKYADLSQNRTSDYIF---SFDKMLSLQGNTAPYML 484

Query: 657 KAWEMICDVSRR---DFQKIYDRLNVTLTERGESFYQKHMEQL 696
            A+  I  +SR+   DF+++ DR ++ L +  E    KH+ QL
Sbjct: 485 YAYVRIQGISRKGSIDFEQVGDRASIHLQDPSELTLAKHLLQL 527



 Score =  279 bits (714), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 155/350 (44%), Positives = 209/350 (59%), Gaps = 52/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD I+R+LE+ GH V+RLNHVGDWGTQFGMLI +LQ+K+P  LT +    I DL  
Sbjct: 154 STIIGDCIARILEFEGHQVLRLNHVGDWGTQFGMLITYLQEKYPSALTTADVLDIGDLVE 213

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++KKRFDEDE FK+ + + VV LQ    D ++AWE++CD SRR+FQ+IYDRL++ LT
Sbjct: 214 FYRQAKKRFDEDEEFKEASREQVVRLQSGAEDSRRAWELLCDQSRREFQQIYDRLDIKLT 273

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + ++V  LE  G L              T K G                 
Sbjct: 274 ERGESFYNPMLAEVVADLEASGLLVEDQGAKCVFLEGFTNKEGDPLPLIVQKSNGGYNYA 333

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++YVTD GQ  HF  + + A++ G + P+   +  V FG+V 
Sbjct: 334 TTDLAAVRHRINTEGATRLIYVTDAGQANHFAQVWQVARRVGWI-PDGVDVVHVPFGLVK 392

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT--ELTPTELSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLDE ++R+ + L+ + +      +P  +    + V    +
Sbjct: 393 GEDGKKLKTRSGETVRLRDLLDEAVKRAQEDLETRLQQEGRAESPEFVHHVAEVVGIDAV 452

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NR  DY+FSFDKML  +GNTA Y+LYAY RI  I+R   I+ E
Sbjct: 453 KYADLSQNRTSDYIFSFDKMLSLQGNTAPYMLYAYVRIQGISRKGSIDFE 502



 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 8/173 (4%)

Query: 947  TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006
            +P  +    + V    +KYADLS NR  DY+FSFDKML  +GNTA Y+LYAY RI  I+R
Sbjct: 436  SPEFVHHVAEVVGIDAVKYADLSQNRTSDYIFSFDKMLSLQGNTAPYMLYAYVRIQGISR 495

Query: 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST 1066
               I+ E +        + L+   E  LAK LL++++V+  V ++L  + LC+YL+++S 
Sbjct: 496  KGSIDFEQV---GDRASIHLQDPSELTLAKHLLQLHEVIDTVAQELLPNRLCQYLFELSQ 552

Query: 1067 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             F++FYD C  ++ D     +     RL L   TA+ ++    +L I  + +M
Sbjct: 553  KFNQFYDRCPVLKAD-----ECDRASRLALCHLTAETLRLGLSLLGISVLDRM 600



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 29/159 (18%)

Query: 4   PVRDRM-----SVRDYLSDVFTHAVQVAFPEL--GDKTASVASTNEKYVHKFGDFQCNDA 56
           P+R+R      S+   +   F  A+  AF E   G     V S+N K    FGD+QCN A
Sbjct: 7   PLRNRQPKIMSSLIQQMRSRFETALTDAFGETVSGTDPLIVNSSNPK----FGDYQCNVA 62

Query: 57  MALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVY 116
           M+L K       K NP  IA +I   +  +   +P         E A PGF+N+ L   Y
Sbjct: 63  MSLTKRL-----KSNPRQIASTIIEHLQIDDICSPP--------EIAGPGFINLRLKSEY 109

Query: 117 AGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
              Q+   + +   G+ P        V+VDFSSPNIA++
Sbjct: 110 LETQLNAKLTDPRLGIAPN--GNPQNVIVDFSSPNIAKE 146


>gi|434388354|ref|YP_007098965.1| arginyl-tRNA synthetase [Chamaesiphon minutus PCC 6605]
 gi|428019344|gb|AFY95438.1| arginyl-tRNA synthetase [Chamaesiphon minutus PCC 6605]
          Length = 585

 Score =  303 bits (776), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 169/363 (46%), Positives = 227/363 (62%), Gaps = 33/363 (9%)

Query: 210 YLSDVFTHAVQVAFPELGDKTAS-----VASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           YL+     A+  A   LGD  A      V S+N K    FGD+Q N AM L K       
Sbjct: 7   YLTTQLDRAIVAA---LGDDYAGTDPLLVLSSNPK----FGDYQANMAMGLAKKLG---- 55

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            + P  IAQSI          N  +A V +  ++A PGF+N  +   Y   Q++ +  + 
Sbjct: 56  -QQPRAIAQSIVD--------NLDVAAVCEPPQIAGPGFINFTVKSSYLATQLQAMQADS 106

Query: 325 -VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
            +     +K  RV+VDFSSPNIAKEMHVGHLRSTI+GD I+R+LE+ GHDV+RLNHVGDW
Sbjct: 107 RLGVAVADKPQRVIVDFSSPNIAKEMHVGHLRSTILGDCIARVLEFRGHDVLRLNHVGDW 166

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           GTQFGMLI +L++ +P+ LT +    + D+   Y+++KKRFDED  FK+ A Q VV LQ 
Sbjct: 167 GTQFGMLILYLREAYPEALTTADALDLGDIVVLYQQAKKRFDEDAEFKEAARQEVVKLQA 226

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            DP+  KAW+++CD SRR+FQ IYDRLNV LTERGESFY  ++  +V  L+  GLL   D
Sbjct: 227 QDPESIKAWKLLCDQSRREFQVIYDRLNVNLTERGESFYNPYLAAVVEDLKATGLLVESD 286

Query: 502 GRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G + ++       D   +P+ + K+DGG+ Y T+DLAAIR RI+ +KA+ I+Y+TD GQ 
Sbjct: 287 GAQCVFVPGFTNRDGDPLPLIVQKTDGGYNYATTDLAAIRYRIQTDKAERIIYITDAGQA 346

Query: 557 VHF 559
            HF
Sbjct: 347 DHF 349



 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/358 (41%), Positives = 204/358 (56%), Gaps = 56/358 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STI+GD I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++ +P+ LT +  +
Sbjct: 136 HLR----STILGDCIARVLEFRGHDVLRLNHVGDWGTQFGMLILYLREAYPEALTTADAL 191

Query: 618 --ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
              D+   Y+++KKRFDED  FK+ A Q VV LQ  DP+  KAW+++CD SRR+FQ IYD
Sbjct: 192 DLGDIVVLYQQAKKRFDEDAEFKEAARQEVVKLQAQDPESIKAWKLLCDQSRREFQVIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------- 713
           RLNV LTERGESFY  ++  +V  L+  G L              T + G          
Sbjct: 252 RLNVNLTERGESFYNPYLAAVVEDLKATGLLVESDGAQCVFVPGFTNRDGDPLPLIVQKT 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+Y+TD GQ  HF  + + AK A  + P    +  
Sbjct: 312 DGGYNYATTDLAAIRYRIQTDKAERIIYITDAGQADHFAQVFQVAKLANWI-PENVEVLH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQ 806
           V FG+VLG+  KK KTR G++VKL ELLDE + R  + L+ +      +  P  +  +  
Sbjct: 371 VPFGLVLGDGGKKIKTRDGESVKLKELLDEAVDRFRNDLESRLIEESRQEAPEFIDNSAN 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
            V    +KY+DLS NR  +YVFSFDKML  +GNTA Y++YAY R   I+R   I+ ++
Sbjct: 431 IVGISAVKYSDLSQNRTSNYVFSFDKMLALQGNTAPYMMYAYVRPQGISRKGNIDYDN 488



 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 8/173 (4%)

Query: 947  TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006
             P  +  +   V    +KY+DLS NR  +YVFSFDKML  +GNTA Y++YAY R   I+R
Sbjct: 421  APEFIDNSANIVGISAVKYSDLSQNRTSNYVFSFDKMLALQGNTAPYMMYAYVRPQGISR 480

Query: 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST 1066
               I+ ++L     + P+ L    E  LAK LL+++ V+  V RDL  + LC+YL+++S 
Sbjct: 481  KGNIDYDNL---GDNAPIILNEALELTLAKHLLQLSTVIAEVERDLLPNRLCQYLFELSQ 537

Query: 1067 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             +++FYD    ++ +     + + T RL+L + TAK +K   D+L I  + +M
Sbjct: 538  KYNQFYDKHSVLQAE-----EPLRTSRLMLCDLTAKTLKLGLDLLGIPVLERM 585



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 68/145 (46%), Gaps = 26/145 (17%)

Query: 14  YLSDVFTHAVQVAFPELGDKTAS-----VASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           YL+     A+  A   LGD  A      V S+N K    FGD+Q N AM L K       
Sbjct: 7   YLTTQLDRAIVAA---LGDDYAGTDPLLVLSSNPK----FGDYQANMAMGLAKKLG---- 55

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            + P  IAQSI          N  +A V +  + A PGF+N  +   Y   Q++ +  + 
Sbjct: 56  -QQPRAIAQSIVD--------NLDVAAVCEPPQIAGPGFINFTVKSSYLATQLQAMQADS 106

Query: 129 -VQPPTLNKKLRVLVDFSSPNIARK 152
            +     +K  RV+VDFSSPNIA++
Sbjct: 107 RLGVAVADKPQRVIVDFSSPNIAKE 131


>gi|411117389|ref|ZP_11389876.1| arginyl-tRNA synthetase [Oscillatoriales cyanobacterium JSC-12]
 gi|410713492|gb|EKQ70993.1| arginyl-tRNA synthetase [Oscillatoriales cyanobacterium JSC-12]
          Length = 585

 Score =  303 bits (776), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 163/328 (49%), Positives = 217/328 (66%), Gaps = 27/328 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIA-QSIASVVTSELATNPSLAKVIDKIEVAKP 301
           KFGD+Q N AM+L K        K P  IA Q +  +  SEL   P         E+A P
Sbjct: 38  KFGDYQANVAMSLAKPLG-----KAPRAIAEQLVQHLDVSELCEPP---------EIAGP 83

Query: 302 GFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           GF+N+ L   Y   Q+  +  +   G+ P  + +  RV+VDFSSPNIAKEMHVGHLRSTI
Sbjct: 84  GFINLKLKPTYLAAQLVAMQADARLGIAP--VKQPQRVIVDFSSPNIAKEMHVGHLRSTI 141

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYK 416
           IGD I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  P+ LT +  +   DL AFYK
Sbjct: 142 IGDCIARILEFQGHDVLRLNHVGDWGTQFGMLITYLKEVAPEALTTANAVDLGDLVAFYK 201

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 476
           ++K+RFDEDE F++ A   VV LQ  DPD ++AWE++CD SR++FQ IYD L++ L ERG
Sbjct: 202 KAKQRFDEDEAFRETARLEVVKLQAGDPDSRRAWELLCDQSRQEFQVIYDLLDIRLIERG 261

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSD 531
           ESFY   +  +V  L+K GLL  DDG K ++ E     D   +P+ + KSDGG+ Y T+D
Sbjct: 262 ESFYNPLLPSIVEDLDKAGLLVEDDGAKCVFLEGFTNKDGNPLPLIVQKSDGGYNYATTD 321

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           LAA+R RI+++ +D I+Y+TD GQ  HF
Sbjct: 322 LAALRYRIQQDHSDRIIYITDAGQANHF 349



 Score =  272 bits (695), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 153/350 (43%), Positives = 207/350 (59%), Gaps = 52/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  P+ LT +  +   DL A
Sbjct: 139 STIIGDCIARILEFQGHDVLRLNHVGDWGTQFGMLITYLKEVAPEALTTANAVDLGDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K+RFDEDE F++ A   VV LQ  DPD ++AWE++CD SR++FQ IYD L++ L 
Sbjct: 199 FYKKAKQRFDEDEAFRETARLEVVKLQAGDPDSRRAWELLCDQSRQEFQVIYDLLDIRLI 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L+K G L              T K G                 
Sbjct: 259 ERGESFYNPLLPSIVEDLDKAGLLVEDDGAKCVFLEGFTNKDGNPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+Y+TD GQ  HF  + + A++AG L P+   +  V FG+V 
Sbjct: 319 TTDLAALRYRIQQDHSDRIIYITDAGQANHFAQVFQVARRAGWL-PDTVEVVHVPFGLVQ 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT--ELTPTELSEAQQAVAYGCI 813
           GED KK KTRSG+T++L +LLDE + R+   L+ + +    + T   ++   Q V    +
Sbjct: 378 GEDGKKLKTRSGETIRLRDLLDEAVDRARTDLETRIQFEGRQETAEFINHVAQVVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NR  +Y+FSFDKML   GNTA Y+LYAY R+  I+R   I+ E
Sbjct: 438 KYADLSQNRTSNYIFSFDKMLALNGNTAPYMLYAYVRVQGISRKGQIDFE 487



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 104/169 (61%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   Q V    +KYADLS NR  +Y+FSFDKML   GNTA Y+LYAY R+  I+R   I
Sbjct: 425  INHVAQVVGISAVKYADLSQNRTSNYIFSFDKMLALNGNTAPYMLYAYVRVQGISRKGQI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            + E L   A+   + L+ + EF LAK LL++++++  V +DL  + LC+YL+++S  F++
Sbjct: 485  DFEALSADAK---ILLQEDTEFTLAKHLLQLDEIVEEVGQDLFPNKLCQYLFELSQKFNQ 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FYD C  ++ +     + + T RL L + TA+ +K    +L I T+ +M
Sbjct: 542  FYDRCPVLQAE-----EPLRTSRLALCDLTARTLKLGLFLLGIPTLERM 585



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 20/110 (18%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIA-QSIASVVTSELATNPSLAKVIDKIEAAKP 105
           KFGD+Q N AM+L K        K P  IA Q +  +  SEL   P         E A P
Sbjct: 38  KFGDYQANVAMSLAKPLG-----KAPRAIAEQLVQHLDVSELCEPP---------EIAGP 83

Query: 106 GFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           GF+N+ L   Y   Q+  +  +   G+ P  + +  RV+VDFSSPNIA++
Sbjct: 84  GFINLKLKPTYLAAQLVAMQADARLGIAP--VKQPQRVIVDFSSPNIAKE 131


>gi|145481811|ref|XP_001426928.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394006|emb|CAK59530.1| unnamed protein product [Paramecium tetraurelia]
          Length = 600

 Score =  303 bits (776), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 173/437 (39%), Positives = 262/437 (59%), Gaps = 33/437 (7%)

Query: 199 VPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKI 258
           + V+   SV+  +       V  AFP L   +  +   +      F +++    + +   
Sbjct: 4   IGVNTMRSVQKLIKSAMKTRVLTAFPNLPQNSFEIQLESISNNLNF-EYKTPTVIRIYNQ 62

Query: 259 FKDK---GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGE 315
           FK +   G+ K+  ++AQ IA+    +         VI K+E  + GF+ + L+  +  +
Sbjct: 63  FKKQNLFGDLKSEVEVAQKIAATEGQD--------NVIQKVEAIEKGFLTIQLNNQFIED 114

Query: 316 QIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
           +I  I+ NG++ P L KK +V+VD+SSPNIAKEMHVGHLRSTI+G+++ R+LE+ G +VV
Sbjct: 115 EINSILANGLKFP-LEKKQKVVVDYSSPNIAKEMHVGHLRSTILGESLCRILEFQGQEVV 173

Query: 376 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQC 435
           R+NHVGDWGTQFGMLI HL +++PDY T  P + +L+  YKE+KK+FD +E FK ++ Q 
Sbjct: 174 RVNHVGDWGTQFGMLINHLLEEYPDYQTNKPALKELEDLYKEAKKKFDSNEEFKLKSQQF 233

Query: 436 VVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKG 495
           VV LQ  DP    AW+MICD+SR+++ KIY RLNV +TE GES+Y   + ++V   E KG
Sbjct: 234 VVKLQALDPVCIDAWKMICDLSRQEYNKIYQRLNVKITEYGESYYNPILNEIVKECEAKG 293

Query: 496 LLELDDGRKIMW--GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
           ++ELD G KI+   GE    +P+ IVK DGG+ YDT+D+AA + RI E K D ++Y+TD+
Sbjct: 294 IVELDQGAKIIRVKGE---KVPLMIVKKDGGYNYDTTDMAAAKTRILEWKCDRLLYLTDV 350

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 613
           GQ  HF+L+ E        ++L+ +       + H+G     FG+++     KF    T+
Sbjct: 351 GQWNHFKLVFEG-------AKLMGWHQPPNTSMEHMG-----FGLVLGPDGKKFK---TR 395

Query: 614 SPPIADLQAFYKESKKR 630
           S     L     E+K+R
Sbjct: 396 SGDTVKLIDLLDEAKER 412



 Score =  291 bits (744), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/347 (44%), Positives = 210/347 (60%), Gaps = 51/347 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STI+G+++ R+LE+ G +VVR+NHVGDWGTQFGMLI HL +++PDY T  P + +L+  Y
Sbjct: 154 STILGESLCRILEFQGQEVVRVNHVGDWGTQFGMLINHLLEEYPDYQTNKPALKELEDLY 213

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KE+KK+FD +E FK ++ Q VV LQ  DP    AW+MICD+SR+++ KIY RLNV +TE 
Sbjct: 214 KEAKKKFDSNEEFKLKSQQFVVKLQALDPVCIDAWKMICDLSRQEYNKIYQRLNVKITEY 273

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GES+Y   + ++V   E KG                   L + KK G             
Sbjct: 274 GESYYNPILNEIVKECEAKGIVELDQGAKIIRVKGEKVPLMIVKKDGGYNYDTTDMAAAK 333

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++Y+TD+GQ  HF+L+ E AK  G   P  T M+ +GFG+VLG D KKFK
Sbjct: 334 TRILEWKCDRLLYLTDVGQWNHFKLVFEGAKLMGWHQPPNTSMEHMGFGLVLGPDGKKFK 393

Query: 764 TRSGDTVKLSELLDEGLRRSLDKL----------KDKNRHTELTPTELSEAQQAVAYGCI 813
           TRSGDTVKL +LLDE   R+L ++          K+ +  T L+P E   A + +    I
Sbjct: 394 TRSGDTVKLIDLLDEAKERALKQIQLRVQENQQGKEFSTGTALSPEEFETAAERMGIAAI 453

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           KY DL  NR  DY F +DKMLD +GNTAVYL+Y+Y R+ SI R +GI
Sbjct: 454 KYYDLKQNRISDYNFDYDKMLDPKGNTAVYLMYSYVRMLSILRKSGI 500



 Score =  123 bits (309), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 110/209 (52%), Gaps = 21/209 (10%)

Query: 912  RGVGRGQEEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 971
            R + + Q  VQ++ +G          K+ +  T L+P E   A + +    IKY DL  N
Sbjct: 412  RALKQIQLRVQENQQG----------KEFSTGTALSPEEFETAAERMGIAAIKYYDLKQN 461

Query: 972  RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKE 1031
            R  DY F +DKMLD +GNTAVYL+Y+Y R+ SI R +GI  +D  V        + H+ E
Sbjct: 462  RISDYNFDYDKMLDPKGNTAVYLMYSYVRMLSILRKSGI--QDFEVFKGEHKFKITHQHE 519

Query: 1032 FALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHT 1091
              LA  LLR  DVL  VT  L ++ LC+Y+YDI    +E Y N Y I  D        HT
Sbjct: 520  RHLAAQLLRFVDVLQSVTDQLAINWLCDYIYDICVKIAEAY-NQYRILNDE-------HT 571

Query: 1092 -GRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              RLLL EA   V+ + F ++ I  + K+
Sbjct: 572  QTRLLLCEAVKMVLLQSFHLVGIEPIEKI 600



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 13/153 (8%)

Query: 3   VPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKI 62
           + V    SV+  +       V  AFP L   +  +   +      F +++    + +   
Sbjct: 4   IGVNTMRSVQKLIKSAMKTRVLTAFPNLPQNSFEIQLESISNNLNF-EYKTPTVIRIYNQ 62

Query: 63  FKDK---GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGE 119
           FK +   G+ K+  ++AQ IA+    +         VI K+EA + GF+ + L+  +  +
Sbjct: 63  FKKQNLFGDLKSEVEVAQKIAATEGQD--------NVIQKVEAIEKGFLTIQLNNQFIED 114

Query: 120 QMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++  I+ NG++ P L KK +V+VD+SSPNIA++
Sbjct: 115 EINSILANGLKFP-LEKKQKVVVDYSSPNIAKE 146


>gi|376002096|ref|ZP_09779943.1| arginyl-tRNA synthetase [Arthrospira sp. PCC 8005]
 gi|375329482|emb|CCE15696.1| arginyl-tRNA synthetase [Arthrospira sp. PCC 8005]
          Length = 600

 Score =  303 bits (776), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 203/523 (38%), Positives = 286/523 (54%), Gaps = 63/523 (12%)

Query: 215 FTHAVQVAFPEL--GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIA 272
           F  A+  AF E   G     V S+N K    FGD+QCN AM+L K  K      NP  IA
Sbjct: 27  FETALTDAFGETVSGTDPLIVNSSNPK----FGDYQCNVAMSLTKRLK-----SNPRQIA 77

Query: 273 QSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPT 329
            +I   +  +   +P         E+A PGF+N+ L   Y   Q+   + +   G+ P  
Sbjct: 78  STIIEHLQIDDICSPP--------EIAGPGFINLRLKSEYLETQLNAKLTDPRLGIAPN- 128

Query: 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
                 V+VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ GH V+RLNHVGDWGTQFGM
Sbjct: 129 -GNPQNVIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFEGHQVLRLNHVGDWGTQFGM 187

Query: 390 LIAHLQDKFPDYLTKSP--PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           LI +LQ+K+P  LT +    I DL  FY+++KKRFDEDE FK+ +   VV LQ    D +
Sbjct: 188 LITYLQEKYPSALTTADVLDIGDLVEFYRQAKKRFDEDEEFKEASRDQVVRLQSGSEDSR 247

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW 507
           +AWE++CD SRR+FQ+IYDRL++ LTERGESFY   + ++V  LE  GLL  D G K ++
Sbjct: 248 RAWELLCDQSRREFQQIYDRLDIKLTERGESFYNPMLAEVVADLEASGLLVEDQGAKCVF 307

Query: 508 GE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF--- 559
            E     +   +P+ + KS+GG+ Y T+DLAA+R RI  E A  ++YVTD GQ  HF   
Sbjct: 308 LEGFTNKEGDPLPLIVQKSNGGYNYATTDLAAVRHRINTEGATRLIYVTDAGQANHFAQV 367

Query: 560 -RLLEESTIIGDTI--------------SRLLEYLGHDVVRLNHVGDWGTQFGM--LIAH 602
            ++      I D +               + L+    + VRL  + D   +     L   
Sbjct: 368 WQVARRVRWIPDGVDVVHVPFGLVKGEDGKKLKTRSGETVRLRDLLDEAVKRAQEDLETR 427

Query: 603 LQD----KFPDYLTKSPPIADLQAF-YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK- 656
           LQ     + P+++     +  + A  Y +  +    D IF   ++  +++LQ     Y  
Sbjct: 428 LQQEGRAESPEFVHHVAEVVGIDAVKYADLSQNRTSDYIF---SFDKMLSLQGNTAPYML 484

Query: 657 KAWEMICDVSRR---DFQKIYDRLNVTLTERGESFYQKHMEQL 696
            A+  I  +SR+   DF+++ DR ++ L +  E    KH+ QL
Sbjct: 485 YAYVRIQGISRKGSIDFEQVGDRASIHLQDPSELTLAKHLLQL 527



 Score =  275 bits (704), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 154/350 (44%), Positives = 207/350 (59%), Gaps = 52/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD I+R+LE+ GH V+RLNHVGDWGTQFGMLI +LQ+K+P  LT +    I DL  
Sbjct: 154 STIIGDCIARILEFEGHQVLRLNHVGDWGTQFGMLITYLQEKYPSALTTADVLDIGDLVE 213

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++KKRFDEDE FK+ +   VV LQ    D ++AWE++CD SRR+FQ+IYDRL++ LT
Sbjct: 214 FYRQAKKRFDEDEEFKEASRDQVVRLQSGSEDSRRAWELLCDQSRREFQQIYDRLDIKLT 273

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + ++V  LE  G L              T K G                 
Sbjct: 274 ERGESFYNPMLAEVVADLEASGLLVEDQGAKCVFLEGFTNKEGDPLPLIVQKSNGGYNYA 333

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++YVTD GQ  HF  + + A++   + P+   +  V FG+V 
Sbjct: 334 TTDLAAVRHRINTEGATRLIYVTDAGQANHFAQVWQVARRVRWI-PDGVDVVHVPFGLVK 392

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT--ELTPTELSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLDE ++R+ + L+ + +      +P  +    + V    +
Sbjct: 393 GEDGKKLKTRSGETVRLRDLLDEAVKRAQEDLETRLQQEGRAESPEFVHHVAEVVGIDAV 452

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NR  DY+FSFDKML  +GNTA Y+LYAY RI  I+R   I+ E
Sbjct: 453 KYADLSQNRTSDYIFSFDKMLSLQGNTAPYMLYAYVRIQGISRKGSIDFE 502



 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 22/207 (10%)

Query: 913  GVGRGQEEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 972
             V R QE+++  L+  G   S              P  +    + V    +KYADLS NR
Sbjct: 416  AVKRAQEDLETRLQQEGRAES--------------PEFVHHVAEVVGIDAVKYADLSQNR 461

Query: 973  NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEF 1032
              DY+FSFDKML  +GNTA Y+LYAY RI  I+R   I+ E +        + L+   E 
Sbjct: 462  TSDYIFSFDKMLSLQGNTAPYMLYAYVRIQGISRKGSIDFEQV---GDRASIHLQDPSEL 518

Query: 1033 ALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTG 1092
             LAK LL++++V+  V ++L  + LC+YL+++S  F++FYD C  ++ D     +     
Sbjct: 519  TLAKHLLQLHEVIDTVAQELLPNRLCQYLFELSQKFNQFYDRCPVLKAD-----ECDRAS 573

Query: 1093 RLLLAEATAKVMKKCFDILNIRTVHKM 1119
            RL L   TA+ ++    +L I  + +M
Sbjct: 574  RLALCHLTAETLRLGLSLLGISVLDRM 600



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 29/159 (18%)

Query: 4   PVRDRM-----SVRDYLSDVFTHAVQVAFPEL--GDKTASVASTNEKYVHKFGDFQCNDA 56
           P+R+R      S+   +   F  A+  AF E   G     V S+N K    FGD+QCN A
Sbjct: 7   PLRNRQPKIMSSLIQQMRSRFETALTDAFGETVSGTDPLIVNSSNPK----FGDYQCNVA 62

Query: 57  MALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVY 116
           M+L K       K NP  IA +I   +  +   +P         E A PGF+N+ L   Y
Sbjct: 63  MSLTKRL-----KSNPRQIASTIIEHLQIDDICSPP--------EIAGPGFINLRLKSEY 109

Query: 117 AGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
              Q+   + +   G+ P        V+VDFSSPNIA++
Sbjct: 110 LETQLNAKLTDPRLGIAPN--GNPQNVIVDFSSPNIAKE 146


>gi|291571146|dbj|BAI93418.1| arginyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 585

 Score =  302 bits (774), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 203/523 (38%), Positives = 290/523 (55%), Gaps = 63/523 (12%)

Query: 215 FTHAVQVAFPEL--GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIA 272
           F  A+  AF E   G     V S+N K    FGD+QCN AM+L K  K      NP  IA
Sbjct: 12  FETALTDAFGETVSGTDPLIVNSSNPK----FGDYQCNVAMSLTKKLK-----SNPRQIA 62

Query: 273 QSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPT 329
            +I   +  +   +P         E+A PGF+N+ L   Y   Q+   + +   G+ P  
Sbjct: 63  GTIIEHLQIDDICSPP--------EIAGPGFINLRLKSEYLETQLNAKLTDPRLGIAPNR 114

Query: 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
             +K  V+VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ GH V+RLNHVGDWGTQFGM
Sbjct: 115 DPQK--VIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFEGHQVLRLNHVGDWGTQFGM 172

Query: 390 LIAHLQDKFPDYLTKSP--PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           LI++LQ+K+P  LT +    I DL  FY+++KKRFDEDE FK+ + + VV LQ    D +
Sbjct: 173 LISYLQEKYPSALTTADVLDIGDLVEFYRQAKKRFDEDEEFKEASREQVVRLQSGAEDSR 232

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW 507
           +AWE++C+ SRR+FQ+IYDRL++ LTERGESFY   + ++V  LE  GLL  D G K ++
Sbjct: 233 RAWELLCEQSRREFQQIYDRLDIKLTERGESFYNPMLAEVVADLEASGLLVEDQGAKCVF 292

Query: 508 GE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF--- 559
            E     +   +P+ + KS+GG+ Y T+DLAA+R RI  E A  ++YVTD GQ  HF   
Sbjct: 293 LEGFTNKEGDPLPLIVQKSNGGYNYATTDLAAVRHRINTEGATRLIYVTDAGQANHFAQV 352

Query: 560 -RLLEESTIIGDTI--------------SRLLEYLGHDVVRLNHVGDWGTQFGM--LIAH 602
            ++      I D +               + L+    + VRL  + D   +     L   
Sbjct: 353 WQVARRVGWIPDGVDVVHVPFGLVKGEDGKKLKTRSGETVRLRDLLDEAVKRAQEDLETR 412

Query: 603 LQD----KFPDYLTKSPPIADLQAF-YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK- 656
           LQ     + P+++     +  + A  Y +  +    D IF   ++  +++LQ     Y  
Sbjct: 413 LQQEGRAESPEFVHHVAEVVGIDAVKYADLSQNRTSDYIF---SFDKMLSLQGNTAPYML 469

Query: 657 KAWEMICDVSRR---DFQKIYDRLNVTLTERGESFYQKHMEQL 696
            A+  I  +SR+   DF+++ DR ++ L +  E    KH+ QL
Sbjct: 470 YAYVRIQGISRKGSIDFEQVGDRASIHLQDPSELTLAKHLLQL 512



 Score =  278 bits (710), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 154/350 (44%), Positives = 210/350 (60%), Gaps = 52/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD I+R+LE+ GH V+RLNHVGDWGTQFGMLI++LQ+K+P  LT +    I DL  
Sbjct: 139 STIIGDCIARILEFEGHQVLRLNHVGDWGTQFGMLISYLQEKYPSALTTADVLDIGDLVE 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++KKRFDEDE FK+ + + VV LQ    D ++AWE++C+ SRR+FQ+IYDRL++ LT
Sbjct: 199 FYRQAKKRFDEDEEFKEASREQVVRLQSGAEDSRRAWELLCEQSRREFQQIYDRLDIKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + ++V  LE  G L              T K G                 
Sbjct: 259 ERGESFYNPMLAEVVADLEASGLLVEDQGAKCVFLEGFTNKEGDPLPLIVQKSNGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++YVTD GQ  HF  + + A++ G + P+   +  V FG+V 
Sbjct: 319 TTDLAAVRHRINTEGATRLIYVTDAGQANHFAQVWQVARRVGWI-PDGVDVVHVPFGLVK 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT--ELTPTELSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLDE ++R+ + L+ + +      +P  +    + V    +
Sbjct: 378 GEDGKKLKTRSGETVRLRDLLDEAVKRAQEDLETRLQQEGRAESPEFVHHVAEVVGIDAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NR  DY+FSFDKML  +GNTA Y+LYAY RI  I+R   I+ E
Sbjct: 438 KYADLSQNRTSDYIFSFDKMLSLQGNTAPYMLYAYVRIQGISRKGSIDFE 487



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 8/173 (4%)

Query: 947  TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006
            +P  +    + V    +KYADLS NR  DY+FSFDKML  +GNTA Y+LYAY RI  I+R
Sbjct: 421  SPEFVHHVAEVVGIDAVKYADLSQNRTSDYIFSFDKMLSLQGNTAPYMLYAYVRIQGISR 480

Query: 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST 1066
               I+ E +        + L+   E  LAK LL++++V+  V ++L  + LC+YL+++S 
Sbjct: 481  KGSIDFEQV---GDRASIHLQDPSELTLAKHLLQLHEVIDAVAQELLPNRLCQYLFELSQ 537

Query: 1067 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             F++FYD C  ++ D     +   + RL L   TA+ ++    +L I  + +M
Sbjct: 538  KFNQFYDRCPVLKAD-----ECDRSSRLALCHLTAETLRLGLSLLGISVLDRM 585



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 24/139 (17%)

Query: 19  FTHAVQVAFPEL--GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIA 76
           F  A+  AF E   G     V S+N K    FGD+QCN AM+L K       K NP  IA
Sbjct: 12  FETALTDAFGETVSGTDPLIVNSSNPK----FGDYQCNVAMSLTKKL-----KSNPRQIA 62

Query: 77  QSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQPPT 133
            +I   +  +   +P         E A PGF+N+ L   Y   Q+   + +   G+ P  
Sbjct: 63  GTIIEHLQIDDICSPP--------EIAGPGFINLRLKSEYLETQLNAKLTDPRLGIAPNR 114

Query: 134 LNKKLRVLVDFSSPNIARK 152
             +K  V+VDFSSPNIA++
Sbjct: 115 DPQK--VIVDFSSPNIAKE 131


>gi|46445865|ref|YP_007230.1| arginyl-tRNA synthetase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81627687|sp|Q6MEP4.1|SYR_PARUW RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|46399506|emb|CAF22955.1| probable arginyl-tRNA synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 584

 Score =  302 bits (774), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 169/424 (39%), Positives = 264/424 (62%), Gaps = 43/424 (10%)

Query: 211 LSDVFTHAVQVAFPELGD-----KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           L+++F  A   AFP+L       +     ST EK    FG +Q N AM L K+ K     
Sbjct: 8   LANLFQQATANAFPDLSVLDPNFQPEITPSTQEK----FGHYQFNSAMKLAKLLK----- 58

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
           KNP  +A++I + +T  L   P L+K    IE+A PGF+N+  S  +  + + DI++   
Sbjct: 59  KNPRQVAEAIVNQLTDSL---PPLSK----IEIAGPGFINMTFSTDFLSKNL-DILLRDA 110

Query: 326 Q--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
               P   K  ++++DFSSPN+AKEMHVGHLRST+IGD+++RL E+LGH V+RLNH+GDW
Sbjct: 111 HFGIPFPEKPEKIIIDFSSPNVAKEMHVGHLRSTVIGDSLARLFEFLGHHVIRLNHLGDW 170

Query: 384 GTQFGMLIAHLQDKFPDYLT--KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           GT FGMLIA+++++ P+ L+  +   +  L ++Y+ SKK+FDE+  FK+RA   VVALQ+
Sbjct: 171 GTAFGMLIAYMKEEAPNVLSGEQKTDLTHLVSWYRSSKKKFDEEPEFKRRAQLEVVALQQ 230

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            +   ++AW+MIC++S++ +Q+IY  L+V + +RGESFY   +  +V  LEKKGL+++ D
Sbjct: 231 GEQKAREAWQMICEISQKAYQEIYQLLDVKIIDRGESFYNPFLPNIVSDLEKKGLVKISD 290

Query: 502 GRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G K ++ E     +  ++P+ I KSDGG+ YDT+D+AAI  RI  EK D ++Y+TD GQ 
Sbjct: 291 GAKCIFLEGFQNREGENLPLMIQKSDGGYNYDTTDMAAIYHRIYHEKGDRLIYITDAGQA 350

Query: 557 VHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 616
            HF+++ ++       +   +YL    +R++HV      FG+++     KF     ++  
Sbjct: 351 THFQMIFKA-------AEKAKYLDTTQIRVDHV-----PFGLVLGTDGKKFRTRSGETEK 398

Query: 617 IADL 620
           + DL
Sbjct: 399 LIDL 402



 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 141/346 (40%), Positives = 206/346 (59%), Gaps = 51/346 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT--KSPPIADLQA 622
           ST+IGD+++RL E+LGH V+RLNH+GDWGT FGMLIA+++++ P+ L+  +   +  L +
Sbjct: 143 STVIGDSLARLFEFLGHHVIRLNHLGDWGTAFGMLIAYMKEEAPNVLSGEQKTDLTHLVS 202

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           +Y+ SKK+FDE+  FK+RA   VVALQ+ +   ++AW+MIC++S++ +Q+IY  L+V + 
Sbjct: 203 WYRSSKKKFDEEPEFKRRAQLEVVALQQGEQKAREAWQMICEISQKAYQEIYQLLDVKII 262

Query: 683 ERGESFYQKHMEQLVPYLEKKG----------------------NLSLT----------- 709
           +RGESFY   +  +V  LEKKG                      NL L            
Sbjct: 263 DRGESFYNPFLPNIVSDLEKKGLVKISDGAKCIFLEGFQNREGENLPLMIQKSDGGYNYD 322

Query: 710 --------------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                         K   ++Y+TD GQ  HF+++ + A+KA  L+  + R+D V FG+VL
Sbjct: 323 TTDMAAIYHRIYHEKGDRLIYITDAGQATHFQMIFKAAEKAKYLDTTQIRVDHVPFGLVL 382

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           G D KKF+TRSG+T KL +LL   +  +   L +KN   E+  +E     +++  G IKY
Sbjct: 383 GTDGKKFRTRSGETEKLIDLLRTAINCADKILSEKN--PEMEESERRHLAKSLGIGAIKY 440

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           ADLS NR  DY FS+D+ML   GNTA +L+YAY RIA I R    N
Sbjct: 441 ADLSCNRVGDYTFSYDRMLRFEGNTAAFLMYAYVRIAGIKRRLKAN 486



 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 104/183 (56%), Gaps = 12/183 (6%)

Query: 937  LKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLY 996
            L +KN   E+  +E     +++  G IKYADLS NR  DY FS+D+ML   GNTA +L+Y
Sbjct: 414  LSEKN--PEMEESERRHLAKSLGIGAIKYADLSCNRVGDYTFSYDRMLRFEGNTAAFLMY 471

Query: 997  AYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHH 1056
            AY RIA I R    N   L    ++T ++LEH  E  L   +LR ++ L L+  DL  + 
Sbjct: 472  AYVRIAGIKRRLKAN---LPAVLENTHINLEHSTEIELGLHILRFHETLNLMANDLLPNR 528

Query: 1057 LCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTV 1116
            L +YLY ++  F+ F+ +C       EG  +     RLLL EATAKV+K+   IL + TV
Sbjct: 529  LTDYLYTLAEKFNAFFRDCRV-----EGTPQ--QNTRLLLCEATAKVLKQGLTILGLTTV 581

Query: 1117 HKM 1119
             KM
Sbjct: 582  DKM 584



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 24/145 (16%)

Query: 15  LSDVFTHAVQVAFPELGD-----KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           L+++F  A   AFP+L       +     ST EK    FG +Q N AM L K+ K     
Sbjct: 8   LANLFQQATANAFPDLSVLDPNFQPEITPSTQEK----FGHYQFNSAMKLAKLLK----- 58

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
           KNP  +A++I + +T  L   P L+K    IE A PGF+N+  S  +  + + DI++   
Sbjct: 59  KNPRQVAEAIVNQLTDSL---PPLSK----IEIAGPGFINMTFSTDFLSKNL-DILLRDA 110

Query: 130 Q--PPTLNKKLRVLVDFSSPNIARK 152
               P   K  ++++DFSSPN+A++
Sbjct: 111 HFGIPFPEKPEKIIIDFSSPNVAKE 135


>gi|172038489|ref|YP_001804990.1| arginyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|354554166|ref|ZP_08973471.1| arginyl-tRNA synthetase [Cyanothece sp. ATCC 51472]
 gi|226710999|sp|B1X0N5.1|SYR_CYAA5 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|171699943|gb|ACB52924.1| arginyl-tRNA-synthetase [Cyanothece sp. ATCC 51142]
 gi|353553845|gb|EHC23236.1| arginyl-tRNA synthetase [Cyanothece sp. ATCC 51472]
          Length = 585

 Score =  302 bits (773), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 160/344 (46%), Positives = 230/344 (66%), Gaps = 29/344 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           + GD+Q N A+ L K        KNP +IAQ I +        N SL  + +   +  PG
Sbjct: 38  RHGDYQANIALPLAKKLG-----KNPREIAQIIIN--------NLSLNTICENPTIGGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L   Y   Q+K +  N   G++   ++   +V+VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85  FINLKLKSSYLETQLKSLYQNQRLGIE--KVHNADKVIVDFSSPNIAKEMHVGHLRSTII 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQAFYKE 417
           GD I+R LE+LG++V+RLNHVGDWGTQFGMLI +L++ +PD LT++    I DL  FYK+
Sbjct: 143 GDCIARTLEFLGYEVLRLNHVGDWGTQFGMLITYLKEVYPDALTQADVLEIGDLVNFYKQ 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +KKRFDED  F++ A + VV LQ  D + +KAW+++CD SRR+FQKIYDRL+V L ERGE
Sbjct: 203 AKKRFDEDPKFQEAAREAVVKLQSGDEESRKAWQLLCDQSRREFQKIYDRLDVKLIERGE 262

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDL 532
           SFY  ++  ++  L+++G+LE D G + ++ E   +     +P+ + KSDGG+ Y T+DL
Sbjct: 263 SFYNPYLNDVIKALDEQGILEKDQGAQCVFLEGFTNKSGDPLPLIVQKSDGGYNYATTDL 322

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVH----FRLLEESTIIGDTI 572
           AA++ RI+E+KA  I+YVTD GQ  H    F++ +++  + DT+
Sbjct: 323 AALKYRIQEDKAKRIIYVTDAGQSNHFAQVFQVAKKANFLPDTV 366



 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/354 (44%), Positives = 215/354 (60%), Gaps = 52/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD I+R LE+LG++V+RLNHVGDWGTQFGMLI +L++ +PD LT++    I DL  
Sbjct: 139 STIIGDCIARTLEFLGYEVLRLNHVGDWGTQFGMLITYLKEVYPDALTQADVLEIGDLVN 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++KKRFDED  F++ A + VV LQ  D + +KAW+++CD SRR+FQKIYDRL+V L 
Sbjct: 199 FYKQAKKRFDEDPKFQEAAREAVVKLQSGDEESRKAWQLLCDQSRREFQKIYDRLDVKLI 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY  ++  ++  L+++G L              T K G                 
Sbjct: 259 ERGESFYNPYLNDVIKALDEQGILEKDQGAQCVFLEGFTNKSGDPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + AKKA  L P+   +  V FG+V 
Sbjct: 319 TTDLAALKYRIQEDKAKRIIYVTDAGQSNHFAQVFQVAKKANFL-PDTVDVTHVPFGLVK 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSG+TVKL +LLDE +  +   L+++ +  +   +E  ++   + V    +
Sbjct: 378 GEDGKKLKTRSGETVKLKDLLDEAVNYARKDLENRLQAEDRKESEDFINHVAETVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           KYADLS NR  DY+FS+DKML  +GNTA Y+LYAY RI SI+R   I+ E+  E
Sbjct: 438 KYADLSQNRISDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNIDYENLGE 491



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   + V    +KYADLS NR  DY+FS+DKML  +GNTA Y+LYAY RI SI+R   I
Sbjct: 425  INHVAETVGISAVKYADLSQNRISDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            + E+L    ++  + L+ + E  L K LL++N+ +  V + L  + LC+YLY++S  F+ 
Sbjct: 485  DYENL---GENIQILLKEDTEIELGKYLLQLNETIKEVEKSLLPNRLCDYLYELSKKFNR 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  ++ D     + V T RLLL + TA+ +K    +L I  + +M
Sbjct: 542  FYENCPVLKSD-----EPVKTSRLLLCDLTARTLKLGLSLLGISVLERM 585



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 18/109 (16%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           + GD+Q N A+ L K        KNP +IAQ I +        N SL  + +      PG
Sbjct: 38  RHGDYQANIALPLAKKLG-----KNPREIAQIIIN--------NLSLNTICENPTIGGPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   Y   Q+K +  N   G++   ++   +V+VDFSSPNIA++
Sbjct: 85  FINLKLKSSYLETQLKSLYQNQRLGIE--KVHNADKVIVDFSSPNIAKE 131


>gi|317968164|ref|ZP_07969554.1| arginyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 594

 Score =  301 bits (771), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/373 (45%), Positives = 224/373 (60%), Gaps = 32/373 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELG------DKTASVASTNEKYVHKFGDFQCNDAMALCKI 258
           + +   L +    A+Q AFPE        D   + AS  E     FGDFQ N A+ L K 
Sbjct: 2   LRIAQSLENQLRDAMQRAFPEAAAAGQAFDPQLAPASKPE-----FGDFQANGALPLAKP 56

Query: 259 FKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK 318
                 K         IA  V  +L  + S   V    ++A PGF+N+ L       +++
Sbjct: 57  LGQPPRK---------IAEAVVEQLKADESFMAVCQAPQIAGPGFINITLQPERLAAEVQ 107

Query: 319 DIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
             + +  +  P + +   V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RL
Sbjct: 108 QRLGDARLGVPAVEQAAPVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHPVLRL 167

Query: 378 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQC 435
           NHVGDWGTQFGMLI HL+   P+ L  +  +   DL AFY+E+KKRFDEDE F+  + + 
Sbjct: 168 NHVGDWGTQFGMLITHLKQVAPEALETADAVDLGDLVAFYREAKKRFDEDEAFQTTSREE 227

Query: 436 VVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKG 495
           VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+ERGESFY  ++E +V  LE  G
Sbjct: 228 VVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLSERGESFYNPYLEGVVRDLEATG 287

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI----EEEKADW 546
           LL +DDG   ++     G+D   +P+ + KSDGGF Y T+DLAAIR R     E + A  
Sbjct: 288 LLVVDDGAGCVFLEGVSGKDGKPLPVIVQKSDGGFNYATTDLAAIRYRFGSAPEGDGARR 347

Query: 547 IVYVTDLGQGVHF 559
           +VYVTD GQ  HF
Sbjct: 348 VVYVTDAGQANHF 360



 Score =  277 bits (708), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 156/350 (44%), Positives = 202/350 (57%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL A
Sbjct: 146 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALETADAVDLGDLVA 205

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFDEDE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+
Sbjct: 206 FYREAKKRFDEDEAFQTTSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLS 265

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSLTKKLG----------------------------- 713
           ERGESFY  ++E +V  LE  G L +    G                             
Sbjct: 266 ERGESFYNPYLEGVVRDLEATGLLVVDDGAGCVFLEGVSGKDGKPLPVIVQKSDGGFNYA 325

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 +VYVTD GQ  HF  + + A++AG L P   R++ V F
Sbjct: 326 TTDLAAIRYRFGSAPEGDGARRVVYVTDAGQANHFAGVFQVARRAGWL-PEGARLEHVPF 384

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L +LLDE + RS   L+ +      +  E  ++     V 
Sbjct: 385 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERSEADLRRRLEEEGRSEDEAFIAHVANTVG 444

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 445 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 494



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 89/162 (54%), Gaps = 10/162 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G    DL  
Sbjct: 443  VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLD- 497

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
            AA +  +     +E+AL + LL+ + V+  V  +L  + LC YL+++S  F+ FYD    
Sbjct: 498  AASTGGLQFSEPQEWALVRELLKFDAVIAEVEEELLPNRLCTYLFELSQVFNRFYDQVPV 557

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ + E         RL L   TA  +K    +L I T+ +M
Sbjct: 558  LKAEPE-----ALPSRLALCRLTADTLKLGLGLLGIPTLDRM 594



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 21/151 (13%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELG------DKTASVASTNEKYVHKFGDFQCNDAMALCKI 62
           + +   L +    A+Q AFPE        D   + AS  E     FGDFQ N A+ L K 
Sbjct: 2   LRIAQSLENQLRDAMQRAFPEAAAAGQAFDPQLAPASKPE-----FGDFQANGALPLAKP 56

Query: 63  FKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLS-RVYAGEQM 121
                 K         IA  V  +L  + S   V    + A PGF+N+ L     A E  
Sbjct: 57  LGQPPRK---------IAEAVVEQLKADESFMAVCQAPQIAGPGFINITLQPERLAAEVQ 107

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           + +    +  P + +   V+VDFSSPNIA++
Sbjct: 108 QRLGDARLGVPAVEQAAPVVVDFSSPNIAKE 138


>gi|428211390|ref|YP_007084534.1| arginyl-tRNA synthetase [Oscillatoria acuminata PCC 6304]
 gi|427999771|gb|AFY80614.1| arginyl-tRNA synthetase [Oscillatoria acuminata PCC 6304]
          Length = 585

 Score =  301 bits (771), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 173/367 (47%), Positives = 234/367 (63%), Gaps = 33/367 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           S  + L +    A+  AF E   G     V +TN K    FGD+Q N AM+L K  K K 
Sbjct: 3   STNELLRNQVEKALIAAFGEEMAGTDPVLVPTTNPK----FGDYQANLAMSLAKPLKQK- 57

Query: 264 EKKNPFDIAQSIA-SVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV 322
               P DIAQ I  ++  SE    P         E+A PGF+N  L   Y  +Q+  I  
Sbjct: 58  ----PRDIAQKIIDNIDVSEFCEPP---------EIAGPGFINFTLKPSYLEQQLAAIEG 104

Query: 323 N---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           +   G++P  ++   RV+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GHDV+RLNH
Sbjct: 105 DERLGIEP--VSHPQRVVVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFWGHDVLRLNH 162

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           VGDWGTQFGMLI +L++  PD LT +    + DL AFYK++KKRFD+DE F++ + Q VV
Sbjct: 163 VGDWGTQFGMLITYLREVSPDALTTANALDLGDLVAFYKKAKKRFDDDEEFREVSRQQVV 222

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
            LQ  D +  +AWE++C+ SR++FQ+IY+ L++ LTERGESFY   + ++V  LE +GLL
Sbjct: 223 KLQAGDREAIRAWELLCEQSRQEFQQIYNLLDIQLTERGESFYNPLLSKVVEDLETQGLL 282

Query: 498 ELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
             D G K ++ E     +    P+ + K++GG+ Y T+DLAA+R RIEE+  D I+YVTD
Sbjct: 283 VEDQGAKCVFLEGFTNKEGDPQPLIVQKTNGGYNYATTDLAALRYRIEEDGCDRIIYVTD 342

Query: 553 LGQGVHF 559
            GQ  HF
Sbjct: 343 SGQSTHF 349



 Score =  270 bits (689), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 150/348 (43%), Positives = 209/348 (60%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  PD LT +  +   DL A
Sbjct: 139 STIIGDSIARVLEFWGHDVLRLNHVGDWGTQFGMLITYLREVSPDALTTANALDLGDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++KKRFD+DE F++ + Q VV LQ  D +  +AWE++C+ SR++FQ+IY+ L++ LT
Sbjct: 199 FYKKAKKRFDDDEEFREVSRQQVVKLQAGDREAIRAWELLCEQSRQEFQQIYNLLDIQLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + ++V  LE +G L              T K G                 
Sbjct: 259 ERGESFYNPLLSKVVEDLETQGLLVEDQGAKCVFLEGFTNKEGDPQPLIVQKTNGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF    + A++AG + P+   +  V FG+VL
Sbjct: 319 TTDLAALRYRIEEDGCDRIIYVTDSGQSTHFAQFFQVARRAGWI-PDNIEVVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GE  KK KTR GDT++L +LLDE + R+  +L+   +    + TE  +    + V  G +
Sbjct: 378 GEGGKKLKTREGDTIRLRDLLDEAVLRARAQLESIIQEEGRSETEEFIENVSRVVGIGAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR+  Y+FS+DKML  +GNTA Y+LYA+ RI  I+R   I+
Sbjct: 438 KYADLSQNRSSSYIFSYDKMLSLQGNTAPYMLYAFVRIQGISRQGNID 485



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            +    + V  G +KYADLS NR+  Y+FS+DKML  +GNTA Y+LYA+ RI  I+R   I
Sbjct: 425  IENVSRVVGIGAVKYADLSQNRSSSYIFSYDKMLSLQGNTAPYMLYAFVRIQGISRQGNI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            + ++L    Q   + L  E E ALAK +L +++VL  V ++L  + LCEYLY +S  F++
Sbjct: 485  DFDNLSSDIQ---IQLGEETELALAKHILSLSEVLKEVEKELLPNRLCEYLYQLSKKFNQ 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  ++ +   +     T RLLL +  AK +K    +L I+ + +M
Sbjct: 542  FYENCPVLQAEEPQR-----TSRLLLCDLAAKTLKLGLSLLGIKLIDRM 585



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 73/149 (48%), Gaps = 26/149 (17%)

Query: 10  SVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           S  + L +    A+  AF E   G     V +TN K    FGD+Q N AM+L K  K K 
Sbjct: 3   STNELLRNQVEKALIAAFGEEMAGTDPVLVPTTNPK----FGDYQANLAMSLAKPLKQK- 57

Query: 68  EKKNPFDIAQSIA-SVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
               P DIAQ I  ++  SE    P         E A PGF+N  L   Y  +Q+  I  
Sbjct: 58  ----PRDIAQKIIDNIDVSEFCEPP---------EIAGPGFINFTLKPSYLEQQLAAIEG 104

Query: 127 N---GVQPPTLNKKLRVLVDFSSPNIARK 152
           +   G++P  ++   RV+VDFSSPNIA++
Sbjct: 105 DERLGIEP--VSHPQRVVVDFSSPNIAKE 131


>gi|428778840|ref|YP_007170626.1| arginyl-tRNA synthetase [Dactylococcopsis salina PCC 8305]
 gi|428693119|gb|AFZ49269.1| arginyl-tRNA synthetase [Dactylococcopsis salina PCC 8305]
          Length = 584

 Score =  301 bits (770), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/327 (49%), Positives = 216/327 (66%), Gaps = 25/327 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N A++L K  K K     P D AQ I          +  +A++ +  E+A PG
Sbjct: 38  EFGDYQSNVALSLAKTLKQK-----PRDTAQQILD--------HLEIAQLCEPPEIAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L   Y   Q++ I  +   GV+     +  RV+VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85  FINLKLKPSYLENQLQTIAQDDQLGVEKAETPQ--RVIVDFSSPNIAKEMHVGHLRSTII 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA--DLQAFYKE 417
           GD I+R+LE+ GH+V+RLNHVGDWGTQFGMLIA+L++ +PD L K+  +A  DL   Y++
Sbjct: 143 GDCIARILEFRGHNVLRLNHVGDWGTQFGMLIAYLREAYPDALIKADALAIGDLVTLYRQ 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +KKRFDEDE F+  A + VV LQ+   D  KAW+++C+ SRR+FQ IYD L V LTERGE
Sbjct: 203 AKKRFDEDEQFQTTAREEVVKLQKGAEDSVKAWQLLCEQSRREFQVIYDLLGVKLTERGE 262

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDL 532
           SFY   +  +V  LE KGLLE D G K ++ E   +     +P+ + K+DGG+ Y T+DL
Sbjct: 263 SFYNPLLPDVVGELEAKGLLEEDQGAKCVFLEGFSNKSGERLPLIVQKTDGGYNYATTDL 322

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
           AAIR RI E+ A  I+YVTD GQ  HF
Sbjct: 323 AAIRYRIREDGAQRIIYVTDAGQANHF 349



 Score =  273 bits (697), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 156/348 (44%), Positives = 204/348 (58%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA--DLQA 622
           STIIGD I+R+LE+ GH+V+RLNHVGDWGTQFGMLIA+L++ +PD L K+  +A  DL  
Sbjct: 139 STIIGDCIARILEFRGHNVLRLNHVGDWGTQFGMLIAYLREAYPDALIKADALAIGDLVT 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
            Y+++KKRFDEDE F+  A + VV LQ+   D  KAW+++C+ SRR+FQ IYD L V LT
Sbjct: 199 LYRQAKKRFDEDEQFQTTAREEVVKLQKGAEDSVKAWQLLCEQSRREFQVIYDLLGVKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  LE KG L              + K G                 
Sbjct: 259 ERGESFYNPLLPDVVGELEAKGLLEEDQGAKCVFLEGFSNKSGERLPLIVQKTDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + AK+AG + P    +  V FG+V 
Sbjct: 319 TTDLAAIRYRIREDGAQRIIYVTDAGQANHFTQVFQVAKRAGWI-PEDVELVHVPFGLVQ 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSGDT++L +LLDE + RS   L+ +        +E  + +  + V    +
Sbjct: 378 GEDGKKLKTRSGDTIRLRDLLDEAIARSRQDLEKRFAAEGRNESEDFIEKTARGVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  +YVFSFDKML  +GNTA YLLYAY R+  I+R   I+
Sbjct: 438 KYADLSRNRTSNYVFSFDKMLALQGNTAPYLLYAYVRVQGISRKGNID 485



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 9/169 (5%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            + +  + V    +KYADLS NR  +YVFSFDKML  +GNTA YLLYAY R+  I+R   I
Sbjct: 425  IEKTARGVGISAVKYADLSRNRTSNYVFSFDKMLALQGNTAPYLLYAYVRVQGISRKGNI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
               DL      T V L  + E  LAK +L+++D+L  V +DL  + LC YL+++S  F++
Sbjct: 485  ---DLATLGNQTIV-LADDSELVLAKHILQLSDILKEVEKDLLPNRLCLYLFELSQKFNQ 540

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FYD C  ++ +   +     T RL+LA+ TA+ +K   ++L I  + +M
Sbjct: 541  FYDRCPVLQAEEPKR-----TSRLMLADLTARTLKLGLNLLGIEVLERM 584



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 18/109 (16%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N A++L K  K K     P D AQ I          +  +A++ +  E A PG
Sbjct: 38  EFGDYQSNVALSLAKTLKQK-----PRDTAQQILD--------HLEIAQLCEPPEIAGPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   Y   Q++ I  +   GV+     +  RV+VDFSSPNIA++
Sbjct: 85  FINLKLKPSYLENQLQTIAQDDQLGVEKAETPQ--RVIVDFSSPNIAKE 131


>gi|113477422|ref|YP_723483.1| arginyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|122964531|sp|Q10XL4.1|SYR_TRIEI RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|110168470|gb|ABG53010.1| arginyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
          Length = 585

 Score =  300 bits (769), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 171/374 (45%), Positives = 237/374 (63%), Gaps = 41/374 (10%)

Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCK 257
           P+ +++  R      F  A+  AF +  +G     V++TN K    FGD+QCN AM+L K
Sbjct: 3   PIVEQLKSR------FDKALITAFGQDLVGTDPMIVSTTNPK----FGDYQCNVAMSLAK 52

Query: 258 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 317
             KDK          ++IA+ + + L  N          E+A PGF+N+ L   Y    +
Sbjct: 53  KLKDK---------PKAIATQIINNLNINDYFYPP----EIAGPGFINLSLKPEYIENCL 99

Query: 318 KDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
           + II +      PT N + RV++DFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH+V+
Sbjct: 100 ETIIKDEKLNISPTKNPQ-RVVIDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFQGHNVL 158

Query: 376 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQAFYKESKKRFDEDEIFKKRAY 433
           RLNHVGDWGTQFGMLI++L++ FP+ L  +    I DL AFYK+SKKRFDED+ F++++ 
Sbjct: 159 RLNHVGDWGTQFGMLISYLREAFPEALKTADILDIGDLVAFYKQSKKRFDEDQDFQEKSR 218

Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 493
           Q VV LQ    D + AWE++C+ SRR+FQ IYD L++ L ERGESFY   +  +V  L +
Sbjct: 219 QEVVNLQTGAEDSRHAWELLCNQSRREFQVIYDLLDIKLNERGESFYNSMLPGIVEELNR 278

Query: 494 KGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKAD 545
            GLLE  DG + ++        GED   +P+ + KSDGG+ Y T+DLAA+  RIE+E A 
Sbjct: 279 LGLLEESDGAQCVFLSGFTNKEGED---VPLIVKKSDGGYNYATTDLAALVHRIEKEGAT 335

Query: 546 WIVYVTDLGQGVHF 559
            ++YVTD GQ  HF
Sbjct: 336 RLIYVTDAGQANHF 349



 Score =  275 bits (703), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 155/350 (44%), Positives = 209/350 (59%), Gaps = 52/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD+++R+LE+ GH+V+RLNHVGDWGTQFGMLI++L++ FP+ L  +    I DL A
Sbjct: 139 STIIGDSLARVLEFQGHNVLRLNHVGDWGTQFGMLISYLREAFPEALKTADILDIGDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK+SKKRFDED+ F++++ Q VV LQ    D + AWE++C+ SRR+FQ IYD L++ L 
Sbjct: 199 FYKQSKKRFDEDQDFQEKSRQEVVNLQTGAEDSRHAWELLCNQSRREFQVIYDLLDIKLN 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L + G L              T K G                 
Sbjct: 259 ERGESFYNSMLPGIVEELNRLGLLEESDGAQCVFLSGFTNKEGEDVPLIVKKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++YVTD GQ  HF  + + AKKAG + P    +  V FG+VL
Sbjct: 319 TTDLAALVHRIEKEGATRLIYVTDAGQANHFSQVWQVAKKAGWI-PENVEIVNVFFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLDE + ++ + L+ + +  +   +E  +    Q V    +
Sbjct: 378 GEDGKKLKTRSGETVRLIDLLDEAINKARNDLEKRLKDEKRLESEEFIKNVAQVVGLSAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NR  +YVFSFDKML  +GNTA YLLYAY R+  I+R   IN E
Sbjct: 438 KYADLSQNRKSNYVFSFDKMLALQGNTAPYLLYAYVRVQGISRKGEINFE 487



 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 116/191 (60%), Gaps = 13/191 (6%)

Query: 931  RRSLDK-LKDKNRHTELTPTE-LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            R  L+K LKD+ R   L   E +    Q V    +KYADLS NR  +YVFSFDKML  +G
Sbjct: 406  RNDLEKRLKDEKR---LESEEFIKNVAQVVGLSAVKYADLSQNRKSNYVFSFDKMLALQG 462

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYAY R+  I+R   IN E LR  A+   + L+ E E  L K LL++N+VL +V
Sbjct: 463  NTAPYLLYAYVRVQGISRKGEINFEKLRKDAK---IILQDEPELVLGKHLLKLNEVLNIV 519

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            T +L  + LCEYLY++S  F++F++NC  ++ +     + + T RLLL + TA+ +K   
Sbjct: 520  TIELLPNRLCEYLYELSEKFNKFFENCPVLKSE-----EPLRTSRLLLCDLTARTLKLGL 574

Query: 1109 DILNIRTVHKM 1119
             +L I  + +M
Sbjct: 575  YLLGISVLERM 585



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 36/235 (15%)

Query: 11  VRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           + + L   F  A+  AF +  +G     V++TN K    FGD+QCN AM+L K  KDK  
Sbjct: 4   IVEQLKSRFDKALITAFGQDLVGTDPMIVSTTNPK----FGDYQCNVAMSLAKKLKDK-- 57

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
                   ++IA+ + + L  N          E A PGF+N+ L   Y    ++ II + 
Sbjct: 58  -------PKAIATQIINNLNINDYFYPP----EIAGPGFINLSLKPEYIENCLETIIKDE 106

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSS 186
                PT N + RV++DFSSPNIA++      HL S I    I  ++A   + QG +   
Sbjct: 107 KLNISPTKNPQ-RVVIDFSSPNIAKE--MHVGHLRSTI----IGDSLARVLEFQGHNVLR 159

Query: 187 SSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKY 240
            +       +  + +S       YL + F  A++ A   ++GD  A    + +++
Sbjct: 160 LNHVGDWGTQFGMLIS-------YLREAFPEALKTADILDIGDLVAFYKQSKKRF 207


>gi|81300386|ref|YP_400594.1| arginyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|81169267|gb|ABB57607.1| arginyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
          Length = 590

 Score =  300 bits (768), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/361 (46%), Positives = 232/361 (64%), Gaps = 31/361 (8%)

Query: 211 LSDVFTHAVQVAF-PELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 268
           L D F  A+  +F PE        V +TN K    FGD+Q N AM+L K        + P
Sbjct: 14  LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 64

Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GV 325
             IA++        L  N +LA + +   +A PGF+N  L   Y   Q++ +  +   G+
Sbjct: 65  RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 116

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
           QP  ++   RV+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GH+V+RLNHVGDWGT
Sbjct: 117 QP--VSPPQRVIVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFQGHEVLRLNHVGDWGT 174

Query: 386 QFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           QFGMLIA LQ+++P  L++     I+DL AFYK++K RFDED  F++ A Q VV LQ  +
Sbjct: 175 QFGMLIAFLQEQYPQALSQPDALDISDLVAFYKQAKARFDEDPSFQETARQRVVDLQSGE 234

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
              ++AW+++CD SRR+FQKIYDRL++ L ERGESFY  ++  +V  L + GLL  D G 
Sbjct: 235 ATARQAWQLLCDQSRREFQKIYDRLDIQLEERGESFYNPYLPAIVEDLRRLGLLVEDQGA 294

Query: 504 KIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           + ++ E     +   +P+ + KSDGG+ Y T+DLAA+R R+ +++A  I+YVTD GQ  H
Sbjct: 295 QCVFLEGFQNKEGQPLPLIVQKSDGGYNYATTDLAALRYRLGQDQAQRIIYVTDSGQANH 354

Query: 559 F 559
           F
Sbjct: 355 F 355



 Score =  293 bits (750), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 162/348 (46%), Positives = 214/348 (61%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GH+V+RLNHVGDWGTQFGMLIA LQ+++P  L++     I+DL A
Sbjct: 145 STIIGDSIARVLEFQGHEVLRLNHVGDWGTQFGMLIAFLQEQYPQALSQPDALDISDLVA 204

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K RFDED  F++ A Q VV LQ  +   ++AW+++CD SRR+FQKIYDRL++ L 
Sbjct: 205 FYKQAKARFDEDPSFQETARQRVVDLQSGEATARQAWQLLCDQSRREFQKIYDRLDIQLE 264

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------------------------------ 706
           ERGESFY  ++  +V  L + G L                                    
Sbjct: 265 ERGESFYNPYLPAIVEDLRRLGLLVEDQGAQCVFLEGFQNKEGQPLPLIVQKSDGGYNYA 324

Query: 707 -----SLTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                +L  +LG      I+YVTD GQ  HF  + + A++AG L P   +++ V FG+V 
Sbjct: 325 TTDLAALRYRLGQDQAQRIIYVTDSGQANHFAQVFQVAQRAGWL-PAAAQIEHVPFGLVQ 383

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTEL--TPTELSEAQQAVAYGCI 813
           GED KK KTR+GDTV+L +LLDE + R+   L  +    E   TP  +    QAV  G +
Sbjct: 384 GEDGKKLKTRAGDTVRLRDLLDEAVDRARTDLTTRIAAEERSETPEFIEAVAQAVGLGAV 443

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NRN +Y+FSFDKML  +GNTA YLLYAY RI  IAR  GI+
Sbjct: 444 KYADLSQNRNSNYIFSFDKMLALQGNTAPYLLYAYVRIQGIARKGGID 491



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 115/203 (56%), Gaps = 25/203 (12%)

Query: 930  LRRSLDKLKDKNRHTELT-----------PTELSEAQQAVAYGCIKYADLSHNRNLDYVF 978
            LR  LD+  D+ R T+LT           P  +    QAV  G +KYADLS NRN +Y+F
Sbjct: 400  LRDLLDEAVDRAR-TDLTTRIAAEERSETPEFIEAVAQAVGLGAVKYADLSQNRNSNYIF 458

Query: 979  SFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVS--LEHEKEFALAK 1036
            SFDKML  +GNTA YLLYAY RI  IAR  GI+       AQ  PV+  L    E +LAK
Sbjct: 459  SFDKMLALQGNTAPYLLYAYVRIQGIARKGGIDF------AQLDPVAAVLTEPTERSLAK 512

Query: 1037 TLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLL 1096
             +L++ +VL  V RDL  + LC YL+++S  F++FYD C  +  +     +   T RLLL
Sbjct: 513  QVLQLGEVLDEVARDLLPNRLCSYLFELSQTFNQFYDRCPILNAE-----EPQRTSRLLL 567

Query: 1097 AEATAKVMKKCFDILNIRTVHKM 1119
             + TA+ +K    +L I  + +M
Sbjct: 568  CDLTARTLKLGLSLLGISVLERM 590



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 24/143 (16%)

Query: 15  LSDVFTHAVQVAF-PELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
           L D F  A+  +F PE        V +TN K    FGD+Q N AM+L K        + P
Sbjct: 14  LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 64

Query: 73  FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GV 129
             IA++        L  N +LA + +    A PGF+N  L   Y   Q++ +  +   G+
Sbjct: 65  RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 116

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
           QP  ++   RV+VDFSSPNIA++
Sbjct: 117 QP--VSPPQRVIVDFSSPNIAKE 137


>gi|168014459|ref|XP_001759769.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688899|gb|EDQ75273.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  300 bits (767), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 177/432 (40%), Positives = 260/432 (60%), Gaps = 37/432 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           SVR  + ++   A+    P++ D    VA        K GD+QCN+AM +    K K   
Sbjct: 28  SVRQQVVNLVREALATTVPDVEDIEPQVAVCGNP---KNGDYQCNNAMGIWSKIKGKNTS 84

Query: 266 -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            KNP  I Q+ +   +S          + D + VA PGFVN+ LS  +  +++  ++ +G
Sbjct: 85  FKNPNAIGQAWSLPRSS----------LTDSVSVAGPGFVNIKLSDRWIEKKLHQLLSHG 134

Query: 325 V--QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           V    P L+ K RV+VDFSSPNIAKEMHVGHLRSTIIGD++ R+LEY G +V+R NHVGD
Sbjct: 135 VGEWAPALSYK-RVVVDFSSPNIAKEMHVGHLRSTIIGDSLCRMLEYCGVEVLRRNHVGD 193

Query: 383 WGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           WGTQFGMLI +L ++FP++       + DLQ FYK++K +FD D  FK++A + VV LQ 
Sbjct: 194 WGTQFGMLIEYLFEEFPNWEEIGDQAVGDLQDFYKKAKIKFDVDAAFKEKAQKAVVLLQG 253

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            +P Y+ AW  ICDVSR+ F ++Y RL VTL E+GES Y +++  +V  L+ KGL+E  +
Sbjct: 254 GNPQYRAAWAKICDVSRKSFDQVYKRLKVTLEEKGESAYNEYIPGVVEELKGKGLVEDSE 313

Query: 502 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           G K++    + +IP+ +VKSDGGF Y ++D+ A+  R+ EEKA+ +VYVTD+GQ  HF +
Sbjct: 314 GAKVIKVSGQ-TIPLILVKSDGGFNYASTDMTAMWYRLNEEKAEVMVYVTDVGQSQHFDM 372

Query: 562 LEESTIIGDTISRLLEYLGHD---VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 618
           + ++       ++   +L  D   + R  HVG     FG+++     +F    T+S  + 
Sbjct: 373 VFKA-------AKRAGWLPEDESQLPRARHVG-----FGLVLGADGKRFR---TRSTEVV 417

Query: 619 DLQAFYKESKKR 630
            L     E+K R
Sbjct: 418 RLVDLLDEAKDR 429



 Score =  267 bits (683), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/345 (44%), Positives = 211/345 (61%), Gaps = 45/345 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGD++ R+LEY G +V+R NHVGDWGTQFGMLI +L ++FP++       + DLQ F
Sbjct: 167 STIIGDSLCRMLEYCGVEVLRRNHVGDWGTQFGMLIEYLFEEFPNWEEIGDQAVGDLQDF 226

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK++K +FD D  FK++A + VV LQ  +P Y+ AW  ICDVSR+ F ++Y RL VTL E
Sbjct: 227 YKKAKIKFDVDAAFKEKAQKAVVLLQGGNPQYRAAWAKICDVSRKSFDQVYKRLKVTLEE 286

Query: 684 RGESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------ 713
           +GES Y +++  +V  L+ KG                   L L K  G            
Sbjct: 287 KGESAYNEYIPGVVEELKGKGLVEDSEGAKVIKVSGQTIPLILVKSDGGFNYASTDMTAM 346

Query: 714 -----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKT---RMDFVGFGVVLGEDR 759
                      +VYVTD+GQ  HF ++ + AK+AG L  +++   R   VGFG+VLG D 
Sbjct: 347 WYRLNEEKAEVMVYVTDVGQSQHFDMVFKAAKRAGWLPEDESQLPRARHVGFGLVLGADG 406

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLS 819
           K+F+TRS + V+L +LLDE   RS   L ++   +E +  EL EA +A+ YG IKYADL 
Sbjct: 407 KRFRTRSTEVVRLVDLLDEAKDRSKQGLVERGNFSEWSAEELEEAAEALGYGAIKYADLK 466

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           +NR  +Y F+FD+MLD RGNTAVYLLYA+ RI SI R +  N E+
Sbjct: 467 NNRLTNYTFNFDQMLDIRGNTAVYLLYAHARICSIIRKSEKNVEE 511



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 115/188 (61%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++   +E +  EL EA +A+ YG IKYADL +NR  +Y F+FD+MLD RGNTA
Sbjct: 429  RSKQGLVERGNFSEWSAEELEEAAEALGYGAIKYADLKNNRLTNYTFNFDQMLDIRGNTA 488

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI R +  N E+L+   Q   + L+H  E AL   L+R  + +     D
Sbjct: 489  VYLLYAHARICSIIRKSEKNVEELKKTGQ---MKLQHPSERALGLQLIRFGEFVEDAASD 545

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LCEYLY +S  F++FY NC  +  + E       T RLLL EATA +M++CF +L
Sbjct: 546  LLPNVLCEYLYTLSGMFTDFYTNCKVVGSEEE-------TSRLLLCEATAVIMRECFKLL 598

Query: 1112 NIRTVHKM 1119
             I  ++++
Sbjct: 599  GIEPLYRL 606



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 19/158 (12%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           SVR  + ++   A+    P++ D    VA        K GD+QCN+AM +    K K   
Sbjct: 28  SVRQQVVNLVREALATTVPDVEDIEPQVAVCGNP---KNGDYQCNNAMGIWSKIKGKNTS 84

Query: 70  -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            KNP  I Q+ +   +S          + D +  A PGFVN+ LS  +  +++  ++ +G
Sbjct: 85  FKNPNAIGQAWSLPRSS----------LTDSVSVAGPGFVNIKLSDRWIEKKLHQLLSHG 134

Query: 129 V--QPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           V    P L+ K RV+VDFSSPNIA++      HL S I
Sbjct: 135 VGEWAPALSYK-RVVVDFSSPNIAKE--MHVGHLRSTI 169


>gi|443320043|ref|ZP_21049173.1| arginyl-tRNA synthetase [Gloeocapsa sp. PCC 73106]
 gi|442790240|gb|ELR99843.1| arginyl-tRNA synthetase [Gloeocapsa sp. PCC 73106]
          Length = 583

 Score =  300 bits (767), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 165/366 (45%), Positives = 235/366 (64%), Gaps = 40/366 (10%)

Query: 211 LSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 268
           L+D FT A+  AF    +  +   VA++N +    FGD+QCN +++L K+    GE  NP
Sbjct: 5   LNDRFTQALIKAFGAEIIPSEPLVVAASNPR----FGDYQCNVSLSLTKVL---GE--NP 55

Query: 269 FDIA-QSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII------ 321
             IA Q I  +  +++   P         E+A PGF+N+ L   Y  +++ +I       
Sbjct: 56  RAIALQIIEQLQITDICLPP---------EIAGPGFINLTLQPDYISDKLLNIYQDQEHL 106

Query: 322 -VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
            +   QP     + R++VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ GH V+RLNHV
Sbjct: 107 GIELAQP-----RERIIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFRGHQVLRLNHV 161

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLIA+L++ +P+ L K     + DL  FYK++K RFD+DE F + A Q VV 
Sbjct: 162 GDWGTQFGMLIAYLREAYPEALVKKDALLLGDLVTFYKQAKLRFDQDEAFGEIARQEVVK 221

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ  + + ++AWE++C+ SRR+FQ IYD L++T+ ERGESFY  ++ ++V  L+ KGLL 
Sbjct: 222 LQSGNEESRRAWELLCEQSRREFQVIYDLLDITIVERGESFYNPYLAEIVAALDAKGLLT 281

Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            DDG K ++      +    +P+ + KSDGG+ Y T+DLAAI+ R E++ A  I+YVTD+
Sbjct: 282 TDDGAKCVFLTGFTNKQGDPLPLIVQKSDGGYNYATTDLAAIKYRTEKDGAQKIIYVTDI 341

Query: 554 GQGVHF 559
           GQ  HF
Sbjct: 342 GQSNHF 347



 Score =  285 bits (729), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 155/351 (44%), Positives = 213/351 (60%), Gaps = 52/351 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+ GH V+RLNHVGDWGTQFGMLIA+L++ +P+ L K   +   DL  
Sbjct: 137 STIIGDCIARILEFRGHQVLRLNHVGDWGTQFGMLIAYLREAYPEALVKKDALLLGDLVT 196

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K RFD+DE F + A Q VV LQ  + + ++AWE++C+ SRR+FQ IYD L++T+ 
Sbjct: 197 FYKQAKLRFDQDEAFGEIARQEVVKLQSGNEESRRAWELLCEQSRREFQVIYDLLDITIV 256

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG----------------- 713
           ERGESFY  ++ ++V  L+ KG L+             T K G                 
Sbjct: 257 ERGESFYNPYLAEIVAALDAKGLLTTDDGAKCVFLTGFTNKQGDPLPLIVQKSDGGYNYA 316

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD+GQ  HF  + + A++AG L P + ++  V FG+VL
Sbjct: 317 TTDLAAIKYRTEKDGAQKIIYVTDIGQSNHFAQVFQIAQRAGFL-PPEVKVIHVPFGLVL 375

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSGDT++L +LLDE + R+   L  +    E T TE  ++E  Q +    +
Sbjct: 376 GEDGKKVKTRSGDTIRLRDLLDEAIARARQDLITRLSQEERTETEAFITEVAQVIGISAV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADLS NR  +YVFS+DKML  +GNTA YLLYAY R+  I R   I+ ++
Sbjct: 436 KYADLSQNRTSNYVFSYDKMLALQGNTAPYLLYAYVRVQGIIRKGNIDFQE 486



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 111/193 (57%), Gaps = 10/193 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
             + R+   L  +    E T TE  ++E  Q +    +KYADLS NR  +YVFS+DKML  
Sbjct: 399  AIARARQDLITRLSQEERTETEAFITEVAQVIGISAVKYADLSQNRTSNYVFSYDKMLAL 458

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
            +GNTA YLLYAY R+  I R   I+ +++    Q   + L+   E +LAK +L+ ND++ 
Sbjct: 459  QGNTAPYLLYAYVRVQGIIRKGNIDFQEIENNLQ---ILLDSTAEQSLAKHILQFNDLIQ 515

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             V  +L  + L +YL+++S  F++FYD C  ++       +++   RL+LAE TA+ +K 
Sbjct: 516  EVEIELLPNRLSQYLFELSQKFNQFYDQCPILQAT-----ESLRISRLILAELTARTLKL 570

Query: 1107 CFDILNIRTVHKM 1119
               +L I  ++++
Sbjct: 571  GLSLLGISVLNRL 583



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 33/148 (22%)

Query: 15  LSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
           L+D FT A+  AF    +  +   VA++N +    FGD+QCN +++L K+    GE  NP
Sbjct: 5   LNDRFTQALIKAFGAEIIPSEPLVVAASNPR----FGDYQCNVSLSLTKVL---GE--NP 55

Query: 73  FDIA-QSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII------ 125
             IA Q I  +  +++   P         E A PGF+N+ L   Y  +++ +I       
Sbjct: 56  RAIALQIIEQLQITDICLPP---------EIAGPGFINLTLQPDYISDKLLNIYQDQEHL 106

Query: 126 -VNGVQPPTLNKKLRVLVDFSSPNIARK 152
            +   QP     + R++VDFSSPNIA++
Sbjct: 107 GIELAQP-----RERIIVDFSSPNIAKE 129


>gi|22002514|gb|AAM82666.1| Syr [Synechococcus elongatus PCC 7942]
          Length = 584

 Score =  300 bits (767), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 167/361 (46%), Positives = 232/361 (64%), Gaps = 31/361 (8%)

Query: 211 LSDVFTHAVQVAF-PELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 268
           L D F  A+  +F PE        V +TN K    FGD+Q N AM+L K        + P
Sbjct: 8   LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 58

Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GV 325
             IA++        L  N +LA + +   +A PGF+N  L   Y   Q++ +  +   G+
Sbjct: 59  RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 110

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
           QP  ++   RV+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GH+V+RLNHVGDWGT
Sbjct: 111 QP--VSPPQRVIVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFQGHEVLRLNHVGDWGT 168

Query: 386 QFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           QFGMLIA LQ+++P  L++     I+DL AFYK++K RFDED  F++ A Q VV LQ  +
Sbjct: 169 QFGMLIAFLQEQYPQALSQPDALDISDLVAFYKQAKARFDEDPSFQETARQRVVDLQSGE 228

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
              ++AW+++CD SRR+FQKIYDRL++ L ERGESFY  ++  +V  L + GLL  D G 
Sbjct: 229 ATARQAWQLLCDQSRREFQKIYDRLDIQLEERGESFYNPYLPAIVEDLRRLGLLVEDQGA 288

Query: 504 KIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           + ++ E     +   +P+ + KSDGG+ Y T+DLAA+R R+ +++A  I+YVTD GQ  H
Sbjct: 289 QCVFLEGFQNKEGQPLPLIVQKSDGGYNYATTDLAALRYRLGQDQAQRIIYVTDSGQANH 348

Query: 559 F 559
           F
Sbjct: 349 F 349



 Score =  293 bits (749), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 162/348 (46%), Positives = 214/348 (61%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GH+V+RLNHVGDWGTQFGMLIA LQ+++P  L++     I+DL A
Sbjct: 139 STIIGDSIARVLEFQGHEVLRLNHVGDWGTQFGMLIAFLQEQYPQALSQPDALDISDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K RFDED  F++ A Q VV LQ  +   ++AW+++CD SRR+FQKIYDRL++ L 
Sbjct: 199 FYKQAKARFDEDPSFQETARQRVVDLQSGEATARQAWQLLCDQSRREFQKIYDRLDIQLE 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------------------------------ 706
           ERGESFY  ++  +V  L + G L                                    
Sbjct: 259 ERGESFYNPYLPAIVEDLRRLGLLVEDQGAQCVFLEGFQNKEGQPLPLIVQKSDGGYNYA 318

Query: 707 -----SLTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                +L  +LG      I+YVTD GQ  HF  + + A++AG L P   +++ V FG+V 
Sbjct: 319 TTDLAALRYRLGQDQAQRIIYVTDSGQANHFAQVFQVAQRAGWL-PAAAQIEHVPFGLVQ 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTEL--TPTELSEAQQAVAYGCI 813
           GED KK KTR+GDTV+L +LLDE + R+   L  +    E   TP  +    QAV  G +
Sbjct: 378 GEDGKKLKTRAGDTVRLRDLLDEAVDRARTDLTTRIAAEERSETPEFIEAVAQAVGLGAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NRN +Y+FSFDKML  +GNTA YLLYAY RI  IAR  GI+
Sbjct: 438 KYADLSQNRNSNYIFSFDKMLALQGNTAPYLLYAYVRIQGIARKGGID 485



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 114/203 (56%), Gaps = 25/203 (12%)

Query: 930  LRRSLDKLKDKNRHTELT-----------PTELSEAQQAVAYGCIKYADLSHNRNLDYVF 978
            LR  LD+  D+ R T+LT           P  +    QAV  G +KYADLS NRN +Y+F
Sbjct: 394  LRDLLDEAVDRAR-TDLTTRIAAEERSETPEFIEAVAQAVGLGAVKYADLSQNRNSNYIF 452

Query: 979  SFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVS--LEHEKEFALAK 1036
            SFDKML  +GNTA YLLYAY RI  IAR  GI+       AQ  PV+  L    E +LAK
Sbjct: 453  SFDKMLALQGNTAPYLLYAYVRIQGIARKGGIDF------AQLDPVAAVLTEPTERSLAK 506

Query: 1037 TLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLL 1096
             +L++ +VL  V RDL  + LC YL+++S  F++FYD C  +  +     +   T RLL+
Sbjct: 507  QVLQLGEVLNEVARDLLPNRLCSYLFELSQTFNQFYDRCPILNAE-----EPQRTSRLLV 561

Query: 1097 AEATAKVMKKCFDILNIRTVHKM 1119
             + T + +K    +L I  + +M
Sbjct: 562  CDLTGRTLKLGLSLLGISVLERM 584



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 24/143 (16%)

Query: 15  LSDVFTHAVQVAF-PELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
           L D F  A+  +F PE        V +TN K    FGD+Q N AM+L K        + P
Sbjct: 8   LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 58

Query: 73  FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GV 129
             IA++        L  N +LA + +    A PGF+N  L   Y   Q++ +  +   G+
Sbjct: 59  RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 110

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
           QP  ++   RV+VDFSSPNIA++
Sbjct: 111 QP--VSPPQRVIVDFSSPNIAKE 131


>gi|93141321|sp|Q8KPU9.2|SYR_SYNE7 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
          Length = 584

 Score =  300 bits (767), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 167/361 (46%), Positives = 232/361 (64%), Gaps = 31/361 (8%)

Query: 211 LSDVFTHAVQVAF-PELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 268
           L D F  A+  +F PE        V +TN K    FGD+Q N AM+L K        + P
Sbjct: 8   LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 58

Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GV 325
             IA++        L  N +LA + +   +A PGF+N  L   Y   Q++ +  +   G+
Sbjct: 59  RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 110

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
           QP  ++   RV+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GH+V+RLNHVGDWGT
Sbjct: 111 QP--VSPPQRVIVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFQGHEVLRLNHVGDWGT 168

Query: 386 QFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           QFGMLIA LQ+++P  L++     I+DL AFYK++K RFDED  F++ A Q VV LQ  +
Sbjct: 169 QFGMLIAFLQEQYPQALSQPDALDISDLVAFYKQAKARFDEDPSFQETARQRVVDLQSGE 228

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
              ++AW+++CD SRR+FQKIYDRL++ L ERGESFY  ++  +V  L + GLL  D G 
Sbjct: 229 ATARQAWQLLCDQSRREFQKIYDRLDIQLEERGESFYNPYLPAIVEDLRRLGLLVEDQGA 288

Query: 504 KIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           + ++ E     +   +P+ + KSDGG+ Y T+DLAA+R R+ +++A  I+YVTD GQ  H
Sbjct: 289 QCVFLEGFQNKEGQPLPLIVQKSDGGYNYATTDLAALRYRLGQDQAQRIIYVTDSGQANH 348

Query: 559 F 559
           F
Sbjct: 349 F 349



 Score =  293 bits (749), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 162/348 (46%), Positives = 214/348 (61%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GH+V+RLNHVGDWGTQFGMLIA LQ+++P  L++     I+DL A
Sbjct: 139 STIIGDSIARVLEFQGHEVLRLNHVGDWGTQFGMLIAFLQEQYPQALSQPDALDISDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K RFDED  F++ A Q VV LQ  +   ++AW+++CD SRR+FQKIYDRL++ L 
Sbjct: 199 FYKQAKARFDEDPSFQETARQRVVDLQSGEATARQAWQLLCDQSRREFQKIYDRLDIQLE 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------------------------------ 706
           ERGESFY  ++  +V  L + G L                                    
Sbjct: 259 ERGESFYNPYLPAIVEDLRRLGLLVEDQGAQCVFLEGFQNKEGQPLPLIVQKSDGGYNYA 318

Query: 707 -----SLTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                +L  +LG      I+YVTD GQ  HF  + + A++AG L P   +++ V FG+V 
Sbjct: 319 TTDLAALRYRLGQDQAQRIIYVTDSGQANHFAQVFQVAQRAGWL-PAAAQIEHVPFGLVQ 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTEL--TPTELSEAQQAVAYGCI 813
           GED KK KTR+GDTV+L +LLDE + R+   L  +    E   TP  +    QAV  G +
Sbjct: 378 GEDGKKLKTRAGDTVRLRDLLDEAVDRARTDLTTRIAAEERSETPEFIEAVAQAVGLGAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NRN +Y+FSFDKML  +GNTA YLLYAY RI  IAR  GI+
Sbjct: 438 KYADLSQNRNSNYIFSFDKMLALQGNTAPYLLYAYVRIQGIARKGGID 485



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 115/203 (56%), Gaps = 25/203 (12%)

Query: 930  LRRSLDKLKDKNRHTELT-----------PTELSEAQQAVAYGCIKYADLSHNRNLDYVF 978
            LR  LD+  D+ R T+LT           P  +    QAV  G +KYADLS NRN +Y+F
Sbjct: 394  LRDLLDEAVDRAR-TDLTTRIAAEERSETPEFIEAVAQAVGLGAVKYADLSQNRNSNYIF 452

Query: 979  SFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVS--LEHEKEFALAK 1036
            SFDKML  +GNTA YLLYAY RI  IAR  GI+       AQ  PV+  L    E +LAK
Sbjct: 453  SFDKMLALQGNTAPYLLYAYVRIQGIARKGGIDF------AQLDPVAAVLTEPTERSLAK 506

Query: 1037 TLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLL 1096
             +L++ +VL  V RDL  + LC YL+++S  F++FYD C  +  +     +   T RLLL
Sbjct: 507  QVLQLGEVLDEVARDLLPNRLCSYLFELSQTFNQFYDRCPILNAE-----EPQRTSRLLL 561

Query: 1097 AEATAKVMKKCFDILNIRTVHKM 1119
             + TA+ +K    +L I  + +M
Sbjct: 562  CDLTARTLKLGLSLLGISVLERM 584



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 24/143 (16%)

Query: 15  LSDVFTHAVQVAF-PELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
           L D F  A+  +F PE        V +TN K    FGD+Q N AM+L K        + P
Sbjct: 8   LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 58

Query: 73  FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GV 129
             IA++        L  N +LA + +    A PGF+N  L   Y   Q++ +  +   G+
Sbjct: 59  RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 110

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
           QP  ++   RV+VDFSSPNIA++
Sbjct: 111 QP--VSPPQRVIVDFSSPNIAKE 131


>gi|56750043|ref|YP_170744.1| arginyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|81596947|sp|Q5N643.1|SYR_SYNP6 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|56685002|dbj|BAD78224.1| arginyl-tRNA-synthetase [Synechococcus elongatus PCC 6301]
          Length = 584

 Score =  299 bits (766), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 167/361 (46%), Positives = 232/361 (64%), Gaps = 31/361 (8%)

Query: 211 LSDVFTHAVQVAF-PELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 268
           L D F  A+  +F PE        V +TN K    FGD+Q N AM+L K        + P
Sbjct: 8   LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 58

Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GV 325
             IA++        L  N +LA + +   +A PGF+N  L   Y   Q++ +  +   G+
Sbjct: 59  RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 110

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
           QP  ++   RV+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GH+V+RLNHVGDWGT
Sbjct: 111 QP--VSPPQRVIVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFQGHEVLRLNHVGDWGT 168

Query: 386 QFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           QFGMLIA LQ+++P  L++     I+DL AFYK++K RFDED  F++ A Q VV LQ  +
Sbjct: 169 QFGMLIAFLQEQYPQALSQPDALDISDLVAFYKQAKARFDEDPSFQETARQRVVDLQSGE 228

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
              ++AW+++CD SRR+FQKIYDRL++ L ERGESFY  ++  +V  L + GLL  D G 
Sbjct: 229 ATARQAWQLLCDQSRREFQKIYDRLDIQLEERGESFYNPYLPAIVEDLRRLGLLVEDQGA 288

Query: 504 KIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           + ++ E     +   +P+ + KSDGG+ Y T+DLAA+R R+ +++A  I+YVTD GQ  H
Sbjct: 289 QCVFLEGFQNKEGQPLPLIVQKSDGGYNYATTDLAALRYRLGQDQAQRIIYVTDSGQANH 348

Query: 559 F 559
           F
Sbjct: 349 F 349



 Score =  294 bits (752), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 169/372 (45%), Positives = 224/372 (60%), Gaps = 55/372 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GH+V+RLNHVGDWGTQFGMLIA LQ+++P  L++     I+DL A
Sbjct: 139 STIIGDSIARVLEFQGHEVLRLNHVGDWGTQFGMLIAFLQEQYPQALSQPDALDISDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K RFDED  F++ A Q VV LQ  +   ++AW+++CD SRR+FQKIYDRL++ L 
Sbjct: 199 FYKQAKARFDEDPSFQETARQRVVDLQSGEATARQAWQLLCDQSRREFQKIYDRLDIQLE 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------------------------------ 706
           ERGESFY  ++  +V  L + G L                                    
Sbjct: 259 ERGESFYNPYLPAIVEDLRRLGLLVEDQGAQCVFLEGFQNKEGQPLPLIVQKSDGGYNYA 318

Query: 707 -----SLTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                +L  +LG      I+YVTD GQ  HF  + + A++AG L P   +++ V FG+V 
Sbjct: 319 TTDLAALRYRLGQDQAQRIIYVTDSGQANHFAQVFQVAQRAGWL-PAAAQIEHVPFGLVQ 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTEL--TPTELSEAQQAVAYGCI 813
           GED KK KTR+GDTV+L +LLDE + R+   L  +    E   TP  +    QAV  G +
Sbjct: 378 GEDGKKLKTRAGDTVRLRDLLDEAVDRARTDLTTRIAAEERSETPEFIEAVAQAVGLGAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQS 873
           KYADLS NRN +Y+FSFDKML  +GNTA YLLYAY RI  IAR  GI   D  + DP  +
Sbjct: 438 KYADLSQNRNSNYIFSFDKMLALQGNTAPYLLYAYVRIQGIARKGGI---DFAQLDPVAA 494

Query: 874 EVEDRCCPSHAK 885
           E+ +    S AK
Sbjct: 495 ELTEPTERSLAK 506



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 115/203 (56%), Gaps = 25/203 (12%)

Query: 930  LRRSLDKLKDKNRHTELT-----------PTELSEAQQAVAYGCIKYADLSHNRNLDYVF 978
            LR  LD+  D+ R T+LT           P  +    QAV  G +KYADLS NRN +Y+F
Sbjct: 394  LRDLLDEAVDRAR-TDLTTRIAAEERSETPEFIEAVAQAVGLGAVKYADLSQNRNSNYIF 452

Query: 979  SFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLE--HEKEFALAK 1036
            SFDKML  +GNTA YLLYAY RI  IAR  GI+       AQ  PV+ E     E +LAK
Sbjct: 453  SFDKMLALQGNTAPYLLYAYVRIQGIARKGGIDF------AQLDPVAAELTEPTERSLAK 506

Query: 1037 TLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLL 1096
             +L++ +VL  V RDL  + LC YL+++S  F++FYD C  +  +     +   T RLLL
Sbjct: 507  QVLQLGEVLDEVARDLLPNRLCSYLFELSQTFNQFYDRCPILNAE-----EPQRTSRLLL 561

Query: 1097 AEATAKVMKKCFDILNIRTVHKM 1119
             + TA+ +K    +L I  + +M
Sbjct: 562  CDLTARTLKLGLSLLGISVLERM 584



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 24/143 (16%)

Query: 15  LSDVFTHAVQVAF-PELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
           L D F  A+  +F PE        V +TN K    FGD+Q N AM+L K        + P
Sbjct: 8   LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 58

Query: 73  FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GV 129
             IA++        L  N +LA + +    A PGF+N  L   Y   Q++ +  +   G+
Sbjct: 59  RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 110

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
           QP  ++   RV+VDFSSPNIA++
Sbjct: 111 QP--VSPPQRVIVDFSSPNIAKE 131


>gi|318040673|ref|ZP_07972629.1| arginyl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 597

 Score =  299 bits (766), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 167/375 (44%), Positives = 231/375 (61%), Gaps = 36/375 (9%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELG------DKTASVASTNEKYVHKFGDFQCNDAMALCKI 258
           + + + L +    A++ AFPE        D   + AS  E     FGDFQ N A+ L K 
Sbjct: 2   LRIAETLDNQLRAAMERAFPEAAPPAGGFDPQLAPASKPE-----FGDFQANGALPLAKP 56

Query: 259 FKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK 318
                         ++IA+ V  +L   PS A++  + ++A PGF+N+ L       +++
Sbjct: 57  LGQP---------PRAIATAVVEQLKAYPSFAELCLEPQIAGPGFINLTLRPERLAAEVQ 107

Query: 319 DIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
             + +   GV  P +     V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+
Sbjct: 108 ACLQDQRLGV--PAVQGGSPVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHPVL 165

Query: 376 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAY 433
           RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL AFY+E+KKRFD+DE F+  + 
Sbjct: 166 RLNHVGDWGTQFGMLITHLKQVAPEALDTADAVDLGDLVAFYREAKKRFDDDEAFQTTSR 225

Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 493
           + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+ERGESFY  ++E +V  LE 
Sbjct: 226 EEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLSERGESFYNPYLEGVVADLEA 285

Query: 494 KGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI----EEEKA 544
            GLL +DDG + ++     G+D   +P+ + KSDGGF Y T+DLAAIR R     + + A
Sbjct: 286 TGLLVVDDGARCVFLEGVSGKDGKPLPVIVQKSDGGFNYATTDLAAIRYRFGAAPDGDGA 345

Query: 545 DWIVYVTDLGQGVHF 559
             ++YVTD GQ  HF
Sbjct: 346 RRVIYVTDAGQANHF 360



 Score =  267 bits (683), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 152/350 (43%), Positives = 203/350 (58%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL A
Sbjct: 146 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALDTADAVDLGDLVA 205

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFD+DE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+
Sbjct: 206 FYREAKKRFDDDEAFQTTSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLS 265

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------------------------------ 706
           ERGESFY  ++E +V  LE  G L                                    
Sbjct: 266 ERGESFYNPYLEGVVADLEATGLLVVDDGARCVFLEGVSGKDGKPLPVIVQKSDGGFNYA 325

Query: 707 -----SLTKKLG----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                ++  + G          ++YVTD GQ  HF  + + A++AG + P   R++ V F
Sbjct: 326 TTDLAAIRYRFGAAPDGDGARRVIYVTDAGQANHFAGVFQVARRAGWV-PEDGRLEHVPF 384

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L +LLDE + R+   L+ +         E  + +    V 
Sbjct: 385 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERAEADLRRRLEEEGRQEEEAFIQQVATTVG 444

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 445 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 494



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 92/171 (53%), Gaps = 11/171 (6%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            + +    V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G 
Sbjct: 436  IQQVATTVGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG- 494

Query: 1011 NSEDLRVAAQST--PVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAF 1068
               DL  ++     P+S    +E+AL + LL+ + V+  V  +L  + LC YL+++S  F
Sbjct: 495  ---DLEGSSVPIDQPLSFHEPQEWALVRELLKFDAVIAEVEEELLPNRLCTYLFELSQVF 551

Query: 1069 SEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            + FYD    ++ D     +     RL L   TA  +K    +L I T+ +M
Sbjct: 552  NRFYDQVPVLKAD-----EPARASRLALCRLTANTLKLGLGLLGIPTLERM 597



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 25/153 (16%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELG------DKTASVASTNEKYVHKFGDFQCNDAMALCKI 62
           + + + L +    A++ AFPE        D   + AS  E     FGDFQ N A+ L K 
Sbjct: 2   LRIAETLDNQLRAAMERAFPEAAPPAGGFDPQLAPASKPE-----FGDFQANGALPLAKP 56

Query: 63  FKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK 122
                         ++IA+ V  +L   PS A++  + + A PGF+N+ L       +++
Sbjct: 57  LGQP---------PRAIATAVVEQLKAYPSFAELCLEPQIAGPGFINLTLRPERLAAEVQ 107

Query: 123 DIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
             + +   GV  P +     V+VDFSSPNIA++
Sbjct: 108 ACLQDQRLGV--PAVQGGSPVVVDFSSPNIAKE 138


>gi|428203983|ref|YP_007082572.1| arginyl-tRNA synthetase [Pleurocapsa sp. PCC 7327]
 gi|427981415|gb|AFY79015.1| arginyl-tRNA synthetase [Pleurocapsa sp. PCC 7327]
          Length = 586

 Score =  299 bits (766), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 162/327 (49%), Positives = 219/327 (66%), Gaps = 25/327 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N A++L K        + P  IAQ        +L  N  LA + +   +A PG
Sbjct: 38  KFGDYQSNIALSLAKQLG-----QQPRAIAQ--------QLVDNLKLADLCENPTIAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L   Y   Q+  +  +   GV+    ++  RV+VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85  FINLTLKPAYLETQLNSLQKDFRLGVEKAKQSQ--RVIVDFSSPNIAKEMHVGHLRSTII 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQAFYKE 417
           GD I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ FPD LT +    I DL AFYK+
Sbjct: 143 GDCIARILEFRGHDVLRLNHVGDWGTQFGMLIAYLREVFPDALTTADVLDIGDLVAFYKQ 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +K RFDEDE F++ A Q VV LQ    D + AW+++CD SRR+FQ IYD L++ LTERGE
Sbjct: 203 AKIRFDEDENFREVARQEVVKLQAGTEDSRHAWQLLCDQSRREFQVIYDLLDIKLTERGE 262

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           SFY   + ++V  L+K+GLL+ D G K ++ E     +   +P+ + KSDGG+ Y T+DL
Sbjct: 263 SFYNPLLPEVVEDLDKQGLLKEDAGAKCVFLEGFINKEGQPLPLIVQKSDGGYNYATTDL 322

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
           AAI+ R++++ A+ I+YVTD GQ  HF
Sbjct: 323 AAIKYRVQQDGAERIIYVTDAGQSHHF 349



 Score =  282 bits (721), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 161/352 (45%), Positives = 210/352 (59%), Gaps = 56/352 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ FPD LT +    I DL A
Sbjct: 139 STIIGDCIARILEFRGHDVLRLNHVGDWGTQFGMLIAYLREVFPDALTTADVLDIGDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K RFDEDE F++ A Q VV LQ    D + AW+++CD SRR+FQ IYD L++ LT
Sbjct: 199 FYKQAKIRFDEDENFREVARQEVVKLQAGTEDSRHAWQLLCDQSRREFQVIYDLLDIKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + ++V  L+K+G L                K G                 
Sbjct: 259 ERGESFYNPLLPEVVEDLDKQGLLKEDAGAKCVFLEGFINKEGQPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + AK+AG L P+   +  V FG+VL
Sbjct: 319 TTDLAAIKYRVQQDGAERIIYVTDAGQSHHFSQVFQVAKRAGFL-PDNVEVVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSL----DKLKDKNRHTELTPTELSEAQQAVAYG 811
           GED +K KTRSGDT+KL +LLDE + R+      +L+ +NR    +   +    Q V   
Sbjct: 378 GEDGRKLKTRSGDTIKLKDLLDEAVDRARKDLEQRLEQENRKE--SKEFIDRVAQVVGIS 435

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            +KYADLS NR  +Y+FS+DKML  +GNTA Y+LYAY R+ SI R   I+ E
Sbjct: 436 AVKYADLSQNRTSNYIFSYDKMLSLQGNTAPYMLYAYARVKSIGREGNIDFE 487



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 103/165 (62%), Gaps = 9/165 (5%)

Query: 956  QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL 1015
            Q V    +KYADLS NR  +Y+FS+DKML  +GNTA Y+LYAY R+ SI R   I+ E +
Sbjct: 430  QVVGISAVKYADLSQNRTSNYIFSYDKMLSLQGNTAPYMLYAYARVKSIGREGNIDFESI 489

Query: 1016 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLY-DISTAFSEFYDN 1074
               A  + V LEHE E ALAK +L++ +V+  V RDL  + LCEYLY ++S  F+ FY+N
Sbjct: 490  ---AGDSKVILEHETELALAKAILQLTEVIKYVERDLMPNRLCEYLYEEVSKKFNRFYEN 546

Query: 1075 CYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            C  ++ +     + + T RL+L + TA+ +K    +L I  + +M
Sbjct: 547  CPVLKAE-----EPIRTSRLILCDLTARTLKLGLSLLGIPVLERM 586



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 18/109 (16%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q N A++L K        + P  IAQ        +L  N  LA + +    A PG
Sbjct: 38  KFGDYQSNIALSLAKQLG-----QQPRAIAQ--------QLVDNLKLADLCENPTIAGPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   Y   Q+  +  +   GV+    ++  RV+VDFSSPNIA++
Sbjct: 85  FINLTLKPAYLETQLNSLQKDFRLGVEKAKQSQ--RVIVDFSSPNIAKE 131


>gi|356520826|ref|XP_003529061.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Glycine max]
          Length = 597

 Score =  299 bits (765), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 179/443 (40%), Positives = 260/443 (58%), Gaps = 38/443 (8%)

Query: 199 VPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASV--ASTNEKYVHKFGDFQCNDAMALC 256
           V V    SV+  L+ VF  +++   P+  D   S+   + N+  V KF D+QCN+AM L 
Sbjct: 4   VEVDCPASVKKQLAKVFEESLRTTVPDEPDVVPSIDPCAANKAGV-KFADYQCNNAMGL- 61

Query: 257 KIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ 316
             F     K+  F   Q++   + + L      +++I+   VA PGFVN+ LS+ +  ++
Sbjct: 62  --FAKMKGKQTGFKGPQAVGQAIRNNLPQ----SEMIESCSVAGPGFVNIVLSKKWIAQR 115

Query: 317 IKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLG-HD 373
           ++ ++++G+    P L  K  VLVDFSSPNIAKEMHVGHLRSTIIGDT++R+ E+     
Sbjct: 116 LERLLIDGIDKWAPQLGVK-TVLVDFSSPNIAKEMHVGHLRSTIIGDTLARMFEFSRVET 174

Query: 374 VVRLNHVGDWGTQFGMLIAHLQDKFP---DYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
           ++R NH+GDWGTQFGMLIAHL D +P   D+   +  I DLQAFYK SK RFD D  FK 
Sbjct: 175 LIRRNHLGDWGTQFGMLIAHLFDTYPNPEDFTEAA--IGDLQAFYKASKVRFDNDPEFKL 232

Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
           RA Q VV LQ  +  Y  AW+ ICD+S+ +F+K+Y RL V L  RGES+Y   +   +  
Sbjct: 233 RAQQSVVQLQSGEEKYHNAWQQICDISKAEFEKVYQRLGVLLEARGESYYNDLIPPTLER 292

Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L+K GL+E DDG ++++ E   +IP+  VK DGGF Y ++DLAA+  R+  E  +W +YV
Sbjct: 293 LDKLGLIEEDDGARVIFVEG-ANIPIIAVKRDGGFNYSSTDLAALWYRLNVENVEWNIYV 351

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHD---VVRLNHVGDWGTQFGMLIAHLQDKF 607
           TD+GQ  HF ++ ++        R   +L +D     +  HVG     FG+++     +F
Sbjct: 352 TDVGQWQHFDMVFKAF-------RRAGWLPNDENEFPKCTHVG-----FGLVLGEDGKRF 399

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
               T+S     L     E+K+R
Sbjct: 400 R---TRSSETVRLVELLDEAKRR 419



 Score =  260 bits (664), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 150/349 (42%), Positives = 205/349 (58%), Gaps = 52/349 (14%)

Query: 565 STIIGDTISRLLEYLG-HDVVRLNHVGDWGTQFGMLIAHLQDKFP---DYLTKSPPIADL 620
           STIIGDT++R+ E+     ++R NH+GDWGTQFGMLIAHL D +P   D+   +  I DL
Sbjct: 156 STIIGDTLARMFEFSRVETLIRRNHLGDWGTQFGMLIAHLFDTYPNPEDFTEAA--IGDL 213

Query: 621 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT 680
           QAFYK SK RFD D  FK RA Q VV LQ  +  Y  AW+ ICD+S+ +F+K+Y RL V 
Sbjct: 214 QAFYKASKVRFDNDPEFKLRAQQSVVQLQSGEEKYHNAWQQICDISKAEFEKVYQRLGVL 273

Query: 681 LTERGESFYQKHMEQLVPYLEKKGNL---------------------------------- 706
           L  RGES+Y   +   +  L+K G +                                  
Sbjct: 274 LEARGESYYNDLIPPTLERLDKLGLIEEDDGARVIFVEGANIPIIAVKRDGGFNYSSTDL 333

Query: 707 -SLTKKLGI------VYVTDLGQGVHFRLLEECAKKAGILNPNK----TRMDFVGFGVVL 755
            +L  +L +      +YVTD+GQ  HF ++ +  ++AG L PN      +   VGFG+VL
Sbjct: 334 AALWYRLNVENVEWNIYVTDVGQWQHFDMVFKAFRRAGWL-PNDENEFPKCTHVGFGLVL 392

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           GED K+F+TRS +TV+L ELLDE  RR    L +++   + +  E+ +  +AV YG +KY
Sbjct: 393 GEDGKRFRTRSSETVRLVELLDEAKRRCKASLLERDAVKDWSEEEIEKTAEAVGYGAVKY 452

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           ADL  NR  +Y FSFD+ML+D+GNTAVYL YA+ RI SI R +G + E+
Sbjct: 453 ADLRINRLTNYTFSFDQMLNDKGNTAVYLQYAHARICSIMRKSGKDIEE 501



 Score =  137 bits (345), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 115/190 (60%), Gaps = 11/190 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            RR    L +++   + +  E+ +  +AV YG +KYADL  NR  +Y FSFD+ML+D+GNT
Sbjct: 418  RRCKASLLERDAVKDWSEEEIEKTAEAVGYGAVKYADLRINRLTNYTFSFDQMLNDKGNT 477

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            AVYL YA+ RI SI R +G + E+++   ++  + L+HE E AL   L++  +V      
Sbjct: 478  AVYLQYAHARICSIMRKSGKDIEEIK---KNGNIVLDHEDERALGLHLIQFPEVFEESLT 534

Query: 1051 DLCLHHLCEYLYDISTAFS-EFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
            +L  + LCEYLY+++  F+ +FY NC  +    E       T RLLL EAT  VM++CF 
Sbjct: 535  NLLPNVLCEYLYNLTEIFTKKFYTNCQVVGSPEE-------TSRLLLCEATVTVMRQCFH 587

Query: 1110 ILNIRTVHKM 1119
            +L I  V+++
Sbjct: 588  LLGIEPVYRL 597



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 13/147 (8%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASV--ASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           SV+  L+ VF  +++   P+  D   S+   + N+  V KF D+QCN+AM L   F    
Sbjct: 11  SVKKQLAKVFEESLRTTVPDEPDVVPSIDPCAANKAGV-KFADYQCNNAMGL---FAKMK 66

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
            K+  F   Q++   + + L      +++I+    A PGFVN+ LS+ +  ++++ ++++
Sbjct: 67  GKQTGFKGPQAVGQAIRNNLPQ----SEMIESCSVAGPGFVNIVLSKKWIAQRLERLLID 122

Query: 128 GVQ--PPTLNKKLRVLVDFSSPNIARK 152
           G+    P L  K  VLVDFSSPNIA++
Sbjct: 123 GIDKWAPQLGVK-TVLVDFSSPNIAKE 148


>gi|428777978|ref|YP_007169765.1| arginyl-tRNA synthetase [Halothece sp. PCC 7418]
 gi|428692257|gb|AFZ45551.1| arginyl-tRNA synthetase [Halothece sp. PCC 7418]
          Length = 584

 Score =  298 bits (763), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 170/366 (46%), Positives = 231/366 (63%), Gaps = 31/366 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           S+ + L   F+ A+  AF E   +T  +     K   +FGD+Q N A++L K  K K   
Sbjct: 3   SLLEQLRQSFSQALVNAFGEDYAETDPLVVPAAK--PEFGDYQSNVALSLAKQLKQK--- 57

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
             P D AQ I          +  ++++ D  E+A PGF+N+ L        +++++    
Sbjct: 58  --PRDTAQQIID--------HLDISELCDPPEIAGPGFINLRLKPT----ALQNLLQTIA 103

Query: 326 QPPTLNKK-----LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
           Q   L  +      RV+VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ GHDV+RLNHV
Sbjct: 104 QDSQLGAEKAETPQRVIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFRGHDVLRLNHV 163

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLIA+L++ +P+ LTK+    I DL + Y+++KKRFDEDE F+K A + VV 
Sbjct: 164 GDWGTQFGMLIAYLREAYPEALTKADVLAIGDLVSLYRDAKKRFDEDEQFQKTAREEVVK 223

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQR +    +AW+++C+ SRR+FQ IYD L+V LTERGESFY   +  +V  LEK GLLE
Sbjct: 224 LQRGEETSVQAWKLLCEQSRREFQVIYDLLDVELTERGESFYNPFLSDVVQELEKTGLLE 283

Query: 499 LDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            D   K ++ E   +     +P+ + KSDGG+ Y T+DLAAIR RI E+ A  I+YVTD 
Sbjct: 284 EDQSAKCVFLEGFSNKSGERLPLIVQKSDGGYNYATTDLAAIRYRIREDGAQRIIYVTDA 343

Query: 554 GQGVHF 559
           GQ  HF
Sbjct: 344 GQSNHF 349



 Score =  276 bits (705), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 156/348 (44%), Positives = 208/348 (59%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P+ LTK+    I DL +
Sbjct: 139 STIIGDCIARILEFRGHDVLRLNHVGDWGTQFGMLIAYLREAYPEALTKADVLAIGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
            Y+++KKRFDEDE F+K A + VV LQR +    +AW+++C+ SRR+FQ IYD L+V LT
Sbjct: 199 LYRDAKKRFDEDEQFQKTAREEVVKLQRGEETSVQAWKLLCEQSRREFQVIYDLLDVELT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  LEK G L              + K G                 
Sbjct: 259 ERGESFYNPFLSDVVQELEKTGLLEEDQSAKCVFLEGFSNKSGERLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + AK+AG + P    +  V FG+V 
Sbjct: 319 TTDLAAIRYRIREDGAQRIIYVTDAGQSNHFAQVFQVAKRAGWV-PETVELVHVPFGLVQ 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLDE + RS   L+ +      + +E  + +  + V    +
Sbjct: 378 GEDGKKLKTRSGETVRLRDLLDEAIARSRQDLEKRFAQEGRSESEEFIQKTARVVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  +YVFS+DKML  +GNTA YLLYAY R+  I+R   I+
Sbjct: 438 KYADLSRNRTSNYVFSYDKMLALQGNTAPYLLYAYVRVQGISRKGNID 485



 Score =  133 bits (334), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 106/169 (62%), Gaps = 9/169 (5%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            + +  + V    +KYADLS NR  +YVFS+DKML  +GNTA YLLYAY R+  I+R   I
Sbjct: 425  IQKTARVVGISAVKYADLSRNRTSNYVFSYDKMLALQGNTAPYLLYAYVRVQGISRKGNI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            +   L  A QS  +SLE + EF LAK +L+++D+L  V +DL  + LC+YL+++S  F++
Sbjct: 485  DFTTL--ANQS--LSLEDDSEFVLAKHILQLSDILKEVEKDLLPNRLCQYLFELSQKFNQ 540

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FYD C  ++ +   +     T RL+LA+ TA+ +K    +L I  + +M
Sbjct: 541  FYDRCPVLQAEEPKR-----TSRLMLADLTARTLKLGLSLLGIEVLERM 584



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 24/148 (16%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+ + L   F+ A+  AF E   +T  +     K   +FGD+Q N A++L K  K K   
Sbjct: 3   SLLEQLRQSFSQALVNAFGEDYAETDPLVVPAAK--PEFGDYQSNVALSLAKQLKQK--- 57

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
             P D AQ I          +  ++++ D  E A PGF+N+ L        +++++    
Sbjct: 58  --PRDTAQQIID--------HLDISELCDPPEIAGPGFINLRLKPT----ALQNLLQTIA 103

Query: 130 QPPTLNKK-----LRVLVDFSSPNIARK 152
           Q   L  +      RV+VDFSSPNIA++
Sbjct: 104 QDSQLGAEKAETPQRVIVDFSSPNIAKE 131


>gi|397569838|gb|EJK47003.1| hypothetical protein THAOC_34315 [Thalassiosira oceanica]
          Length = 830

 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/390 (41%), Positives = 242/390 (62%), Gaps = 18/390 (4%)

Query: 212 SDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDI 271
           S VF   + VAFP        + S   K + + GD+QCN AM L +  K  G   +    
Sbjct: 245 SAVFAAGILVAFPSAASLGVELKSFKCKDM-RHGDYQCNAAMPLYQKLKAAGALPDGVST 303

Query: 272 AQSIASVVTSEL-ATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV--QPP 328
            Q +AS +   + A NP    V++ ++V  PGF+   +   Y  + + DI+ N    +P 
Sbjct: 304 PQQVASAIIDAIGADNP----VMEDLKVNGPGFIMSRIKASYLLDGVNDILKNAAPTKPV 359

Query: 329 TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388
              +   V+VDFSSPNIAKEMHVGHLRSTIIG+++ R+LEY+G DV R+NHVGDWGTQFG
Sbjct: 360 LTAQSGNVVVDFSSPNIAKEMHVGHLRSTIIGESVCRILEYVGADVSRVNHVGDWGTQFG 419

Query: 389 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
           MLI +L++++PD+    P I DL AFYK +K RFDE   FKK +   VV LQ  D + +K
Sbjct: 420 MLIQYLKEEYPDFTDDVPNITDLTAFYKNAKMRFDESPEFKKVSQLNVVKLQAGDEECRK 479

Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD-GRKIMW 507
            W+++CDVSR++F+K+Y+RL++ +TE GESFY   +  ++   +K G+L  ++ G K +W
Sbjct: 480 IWQVLCDVSRKEFEKVYNRLDIKVTECGESFYNDKIAPVIGEFDKAGILTSEEGGAKCVW 539

Query: 508 GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTI 567
             D    P+ + KSDGG+ YD++D+AAI+ RI++  A   VY+TD  QG HF+++ ++  
Sbjct: 540 -VDGYPQPLMLQKSDGGYGYDSTDMAAIKYRIDKLGATQCVYITDFTQGDHFQMVFKA-- 596

Query: 568 IGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
                +R + ++  D  RL+H+G +GT  G
Sbjct: 597 -----ARKIGWVEGDSHRLDHIG-FGTVQG 620



 Score =  275 bits (703), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 147/348 (42%), Positives = 211/348 (60%), Gaps = 48/348 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ R+LEY+G DV R+NHVGDWGTQFGMLI +L++++PD+    P I DL AFY
Sbjct: 387 STIIGESVCRILEYVGADVSRVNHVGDWGTQFGMLIQYLKEEYPDFTDDVPNITDLTAFY 446

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K +K RFDE   FKK +   VV LQ  D + +K W+++CDVSR++F+K+Y+RL++ +TE 
Sbjct: 447 KNAKMRFDESPEFKKVSQLNVVKLQAGDEECRKIWQVLCDVSRKEFEKVYNRLDIKVTEC 506

Query: 685 GESFYQKHMEQLVPYLEKKGNLS-------------------LTK--------------- 710
           GESFY   +  ++   +K G L+                   L K               
Sbjct: 507 GESFYNDKIAPVIGEFDKAGILTSEEGGAKCVWVDGYPQPLMLQKSDGGYGYDSTDMAAI 566

Query: 711 -----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                KLG    VY+TD  QG HF+++ + A+K G +  +  R+D +GFG V GED K+F
Sbjct: 567 KYRIDKLGATQCVYITDFTQGDHFQMVFKAARKIGWVEGDSHRLDHIGFGTVQGEDGKRF 626

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQAVAYGCIKYADLSH 820
           KTRSGDTV+L +LLDE + R    L ++       +T  ++ E   A+ YG +KY DL  
Sbjct: 627 KTRSGDTVRLVDLLDEAVSRMEASLNERIAEGKAGITKDQVHETACAMGYGAVKYFDLRR 686

Query: 821 NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA----GINSED 864
           N   +Y+FS+D+MLD +GNTA+YLLYA+ R+ SI   A    G+N ++
Sbjct: 687 NPTSNYIFSYDRMLDTKGNTAIYLLYAHARLESIISRAEADHGVNVDE 734



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 101/178 (56%), Gaps = 13/178 (7%)

Query: 946  LTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIA 1005
            +T  ++ E   A+ YG +KY DL  N   +Y+FS+D+MLD +GNTA+YLLYA+ R+ SI 
Sbjct: 662  ITKDQVHETACAMGYGAVKYFDLRRNPTSNYIFSYDRMLDTKGNTAIYLLYAHARLESII 721

Query: 1006 RTA----GINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
              A    G+N ++L    Q+  + L H+ E  LA  L    D +    +DL  +H+C+++
Sbjct: 722  SRAEADHGVNVDELIKGGQA--IVLGHKSERNLALHLEIFADCIEETLKDLYPYHICDFV 779

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y++S A S+F   C  +  D           R+LL  ATA  M++CF +L IR V ++
Sbjct: 780  YNLSIAASDFVTQCKVLGTDE-------MQSRVLLCRATAITMRQCFQLLGIRHVMRI 830



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 16  SDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDI 75
           S VF   + VAFP        + S   K + + GD+QCN AM L +  K  G   +    
Sbjct: 245 SAVFAAGILVAFPSAASLGVELKSFKCKDM-RHGDYQCNAAMPLYQKLKAAGALPDGVST 303

Query: 76  AQSIASVVTSEL-ATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV--QPP 132
            Q +AS +   + A NP    V++ ++   PGF+   +   Y  + + DI+ N    +P 
Sbjct: 304 PQQVASAIIDAIGADNP----VMEDLKVNGPGFIMSRIKASYLLDGVNDILKNAAPTKPV 359

Query: 133 TLNKKLRVLVDFSSPNIARK 152
              +   V+VDFSSPNIA++
Sbjct: 360 LTAQSGNVVVDFSSPNIAKE 379


>gi|406942961|gb|EKD75067.1| hypothetical protein ACD_44C00240G0002 [uncultured bacterium]
          Length = 584

 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 168/411 (40%), Positives = 251/411 (61%), Gaps = 42/411 (10%)

Query: 211 LSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKN 267
             ++F  A++ ++P      D    + S +EK    FG +QCN AM L K+ +     + 
Sbjct: 8   FQELFYEAIKQSYPHAKIQHDLVEIMQSASEK----FGHYQCNSAMKLSKLLQ-----QP 58

Query: 268 PFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQ- 326
           P  IAQ+I       L       ++IDK+E+A PGF+NVF+   Y   ++  ++  GV+ 
Sbjct: 59  PRAIAQAI----LQSLHLQNEFKEIIDKVEIAGPGFINVFIRSTYLSLRLNKML-RGVKF 113

Query: 327 ---PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
               P   +  R++VDFSSPNIAKEMHVGHLRSTIIGD I RL E+ G  V+R+NH+GDW
Sbjct: 114 DLSLPMHQE--RIIVDFSSPNIAKEMHVGHLRSTIIGDAICRLFEFYGDTVLRINHIGDW 171

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIAD--LQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           GT FGMLIA+++   P  L +        L  +YK +KK+FD++E FKK+++Q VVALQ 
Sbjct: 172 GTAFGMLIAYMKQAVPKVLEEKQECTSDQLLQWYKAAKKKFDDEEDFKKQSHQEVVALQS 231

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            DP   K WEMIC +S++ +Q+IYD L++ + + GESFY   ++ L+  L+ KGL+++ D
Sbjct: 232 GDPKNLKIWEMICKISQKAYQEIYDLLDIKIQDFGESFYNPMLKPLIHDLDVKGLIKISD 291

Query: 502 GRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G K ++ E     +  ++P+ + KSDGGFTYDT+DLAA+R R+E +KAD ++Y+TD GQG
Sbjct: 292 GAKCIFIEGFKNREGETLPLIVQKSDGGFTYDTTDLAALRYRVEVQKADRVIYITDQGQG 351

Query: 557 VHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
            HF ++ ++       S+   Y+  D  RL+  G     FG+++     KF
Sbjct: 352 NHFSMIFKA-------SQAAGYVDPDKTRLDFAG-----FGLVLGADGKKF 390



 Score =  249 bits (635), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 200/349 (57%), Gaps = 51/349 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD--LQA 622
           STIIGD I RL E+ G  V+R+NH+GDWGT FGMLIA+++   P  L +        L  
Sbjct: 144 STIIGDAICRLFEFYGDTVLRINHIGDWGTAFGMLIAYMKQAVPKVLEEKQECTSDQLLQ 203

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           +YK +KK+FD++E FKK+++Q VVALQ  DP   K WEMIC +S++ +Q+IYD L++ + 
Sbjct: 204 WYKAAKKKFDDEEDFKKQSHQEVVALQSGDPKNLKIWEMICKISQKAYQEIYDLLDIKIQ 263

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSLT--------------------------------- 709
           + GESFY   ++ L+  L+ KG + ++                                 
Sbjct: 264 DFGESFYNPMLKPLIHDLDVKGLIKISDGAKCIFIEGFKNREGETLPLIVQKSDGGFTYD 323

Query: 710 --------------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                         K   ++Y+TD GQG HF ++ + ++ AG ++P+KTR+DF GFG+VL
Sbjct: 324 TTDLAALRYRVEVQKADRVIYITDQGQGNHFSMIFKASQAAGYVDPDKTRLDFAGFGLVL 383

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           G D KKF+TRSG T KL +L+   + ++   +++  R  +L+  E       +    IKY
Sbjct: 384 GADGKKFRTRSGGTEKLLDLIHAAVTQAKKIIQE--RTPDLSSKEQEAQAMVLGVNAIKY 441

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           ADLS NR+ DYVFS++KML   GNTA +LLYAY RI  I R    + +D
Sbjct: 442 ADLSCNRHHDYVFSYEKMLRFEGNTATFLLYAYVRILGIKRRLKFSMDD 490



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 87/163 (53%), Gaps = 15/163 (9%)

Query: 945  ELTPTELSEAQQAVAY----GCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
            E TP   S+ Q+A A       IKYADLS NR+ DYVFS++KML   GNTA +LLYAY R
Sbjct: 417  ERTPDLSSKEQEAQAMVLGVNAIKYADLSCNRHHDYVFSYEKMLRFEGNTATFLLYAYVR 476

Query: 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
            I  I R    + +DL+V      + L H  E  L   L R  + L  VT++L   +L +Y
Sbjct: 477  ILGIKRRLKFSMDDLKV----NEIILSHPSEIDLGLHLCRFAETLEQVTQNLLPSYLTDY 532

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
            LY ++  F+ F+ +C     D E         RLLL + T +V
Sbjct: 533  LYVLAEKFNAFFRDCRVEGSDEEA-------SRLLLCDLTGRV 568



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 23/145 (15%)

Query: 15  LSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKN 71
             ++F  A++ ++P      D    + S +EK    FG +QCN AM L K+ +     + 
Sbjct: 8   FQELFYEAIKQSYPHAKIQHDLVEIMQSASEK----FGHYQCNSAMKLSKLLQ-----QP 58

Query: 72  PFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQ- 130
           P  IAQ+I       L       ++IDK+E A PGF+NVF+   Y   ++  ++  GV+ 
Sbjct: 59  PRAIAQAI----LQSLHLQNEFKEIIDKVEIAGPGFINVFIRSTYLSLRLNKML-RGVKF 113

Query: 131 ---PPTLNKKLRVLVDFSSPNIARK 152
               P   +  R++VDFSSPNIA++
Sbjct: 114 DLSLPMHQE--RIIVDFSSPNIAKE 136


>gi|427713510|ref|YP_007062134.1| arginyl-tRNA synthetase [Synechococcus sp. PCC 6312]
 gi|427377639|gb|AFY61591.1| arginyl-tRNA synthetase [Synechococcus sp. PCC 6312]
          Length = 585

 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 167/366 (45%), Positives = 228/366 (62%), Gaps = 39/366 (10%)

Query: 204 RMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           R+++ D L D      QVA P++    AS          +FGD+Q N  + L      K 
Sbjct: 13  RIALVDVLGD------QVALPDVVVGPASQP--------QFGDYQSNVCLVL-----GKA 53

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
            K+NP  +AQS+   +         LA + +  E+A PGF+N+ L   Y   +I   + +
Sbjct: 54  VKQNPRALAQSLIEKL--------DLADICEPPEIAGPGFINLRLLPSYLAREITPKLGD 105

Query: 324 ---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
              GV P  +   L+V+VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ GHDV+RLNHV
Sbjct: 106 QRLGVAP--VISPLKVVVDFSSPNIAKEMHVGHLRSTIIGDAIARILEFQGHDVLRLNHV 163

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLI HL+  +PD LT      + DL +FYK++K+RFD +  F+  A + VV 
Sbjct: 164 GDWGTQFGMLITHLRTAYPDALTTPDALDLGDLVSFYKQAKQRFDLEPAFQIAAREEVVK 223

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ+ D   ++AWE++C  SRR+FQKIYD L++ LTERGESFY   +  +V  L+ +GLL 
Sbjct: 224 LQQGDTTSRQAWELLCQQSRREFQKIYDLLDIRLTERGESFYNPLLASVVADLKTQGLLV 283

Query: 499 LDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            D G + ++ E     +    P+ I KSDGGF Y T+DLAAIR R+ +++A W++YVTD 
Sbjct: 284 EDQGAQCVFLEGFTNKEGDPQPLIIQKSDGGFNYATTDLAAIRYRVTQDQAQWLIYVTDA 343

Query: 554 GQGVHF 559
           GQ  HF
Sbjct: 344 GQSTHF 349



 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/348 (43%), Positives = 206/348 (59%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+ GHDV+RLNHVGDWGTQFGMLI HL+  +PD LT    +   DL +
Sbjct: 139 STIIGDAIARILEFQGHDVLRLNHVGDWGTQFGMLITHLRTAYPDALTTPDALDLGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K+RFD +  F+  A + VV LQ+ D   ++AWE++C  SRR+FQKIYD L++ LT
Sbjct: 199 FYKQAKQRFDLEPAFQIAAREEVVKLQQGDTTSRQAWELLCQQSRREFQKIYDLLDIRLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L+ +G L              T K G                 
Sbjct: 259 ERGESFYNPLLASVVADLKTQGLLVEDQGAQCVFLEGFTNKEGDPQPLIIQKSDGGFNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++YVTD GQ  HF  + + A++AG L P   +++ + FG+VL
Sbjct: 319 TTDLAAIRYRVTQDQAQWLIYVTDAGQSTHFAQVFQVARRAGWLPPT-VKVEHIPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQAVAYGCI 813
           G + K+ KTRSGDT++L ELLDE + R+   L+ +      + +P  + E  Q +  G +
Sbjct: 378 GAEGKRLKTRSGDTIRLQELLDEAIERAKTDLRSRLDIEGRQESPDFIEEVAQVIGLGAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NRN +YVFSFDKML  +GNTA YL+YAY RI  I R   IN
Sbjct: 438 KYADLSQNRNSNYVFSFDKMLSLQGNTAPYLIYAYVRIQGIIRKGEIN 485



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 93/156 (59%), Gaps = 8/156 (5%)

Query: 947  TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006
            +P  + E  Q +  G +KYADLS NRN +YVFSFDKML  +GNTA YL+YAY RI  I R
Sbjct: 421  SPDFIEEVAQVIGLGAVKYADLSQNRNSNYVFSFDKMLSLQGNTAPYLIYAYVRIQGIIR 480

Query: 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST 1066
               IN   L   A    + L  + E ALAK LL+  D+L LVT++L  + LC+YL+++S 
Sbjct: 481  KGEINFATL---APHLELCLGDDTELALAKHLLQFADILSLVTQELLPNRLCQYLFELSQ 537

Query: 1067 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAK 1102
             F++FYD C  +      +     T RL L + TA+
Sbjct: 538  KFNQFYDRCPVLNSPEPER-----TSRLALCQLTAQ 568



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 38/179 (21%)

Query: 6   RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           R R+++ D L D      QVA P++    AS          +FGD+Q N  + L      
Sbjct: 11  RFRIALVDVLGD------QVALPDVVVGPASQP--------QFGDYQSNVCLVL-----G 51

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           K  K+NP  +AQS+   +         LA + +  E A PGF+N+ L   Y   ++   +
Sbjct: 52  KAVKQNPRALAQSLIEKL--------DLADICEPPEIAGPGFINLRLLPSYLAREITPKL 103

Query: 126 VN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQG 181
            +   GV P  +   L+V+VDFSSPNIA++      HL S I    I  AIA   + QG
Sbjct: 104 GDQRLGVAP--VISPLKVVVDFSSPNIAKE--MHVGHLRSTI----IGDAIARILEFQG 154


>gi|403336906|gb|EJY67655.1| Arginyl-tRNA synthetase [Oxytricha trifallax]
          Length = 645

 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/398 (41%), Positives = 240/398 (60%), Gaps = 30/398 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +S+  +L  +   A  +A P L +K       N+ +     D+ C   + +  + K  G 
Sbjct: 2   LSLPKHLGGIIGKAALMALPGLNEKIQVTPERNKDW-----DYTCPSGIKIYNMNKKTG- 55

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG---------FVNVFLSRVYAGE 315
               F   Q +A+ +   L    S    I+K+E+ + G         F+N+ L   +   
Sbjct: 56  -SFGFPTCQELANAIVQNLDHENS---AIEKVELKQAGAGPADKAGFFLNISLKNEFIEN 111

Query: 316 QIKDIIVNGVQPPTLN------KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEY 369
           +I  I+ +  Q    N      KK RV+VDFSSPNIAK MHVGHLRSTI GD+I R+LE+
Sbjct: 112 EIMKIL-HTEQLSVQNDEEEEAKKQRVVVDFSSPNIAKNMHVGHLRSTIQGDSICRVLEF 170

Query: 370 LGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFK 429
           LG+DV+R NH+GDWGTQFGMLI  L DKFP+   +   + DLQ FY+ +KKRFDE+  FK
Sbjct: 171 LGYDVLRTNHLGDWGTQFGMLITELNDKFPNMQAEGIDMGDLQTFYQNAKKRFDEEPEFK 230

Query: 430 KRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVP 489
           K +   VV LQ  D D  KAW+ +C+VSR++FQKIY+RL++ + ERGESFY   ++ LV 
Sbjct: 231 KTSQLNVVKLQSGDEDCVKAWQYLCEVSRKEFQKIYERLDIRIEERGESFYNPLLKPLVE 290

Query: 490 YLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
            +E++G ++ D G K ++   +  IP+ + KSDGGF YDT+DLAA+R RI E+ ADWI+Y
Sbjct: 291 EMEERGFIKEDKGAKCIF-IPKQKIPLMLQKSDGGFNYDTTDLAALRFRINEQGADWIIY 349

Query: 550 VTDLGQGVHFRLL-EESTIIG--DTISRLLEYLGHDVV 584
           +TD GQ +HF+L+ E   I+G  D     ++++G  +V
Sbjct: 350 ITDCGQELHFKLVFEGGKIVGIYDPTKTRIDHMGFGLV 387



 Score =  259 bits (661), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 169/460 (36%), Positives = 226/460 (49%), Gaps = 103/460 (22%)

Query: 537 QRIEEEKADWIVYVTD-----LGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           Q  EEE+A     V D     + + +H   L  STI GD+I R+LE+LG+DV+R NH+GD
Sbjct: 125 QNDEEEEAKKQRVVVDFSSPNIAKNMHVGHLR-STIQGDSICRVLEFLGYDVLRTNHLGD 183

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 651
           WGTQFGMLI  L DKFP+   +   + DLQ FY+ +KKRFDE+  FKK +   VV LQ  
Sbjct: 184 WGTQFGMLITELNDKFPNMQAEGIDMGDLQTFYQNAKKRFDEEPEFKKTSQLNVVKLQSG 243

Query: 652 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKG------- 704
           D D  KAW+ +C+VSR++FQKIY+RL++ + ERGESFY   ++ LV  +E++G       
Sbjct: 244 DEDCVKAWQYLCEVSRKEFQKIYERLDIRIEERGESFYNPLLKPLVEEMEERGFIKEDKG 303

Query: 705 -----------NLSLTKKLG-----------------------IVYVTDLGQGVHFRLLE 730
                       L L K  G                       I+Y+TD GQ +HF+L+ 
Sbjct: 304 AKCIFIPKQKIPLMLQKSDGGFNYDTTDLAALRFRINEQGADWIIYITDCGQELHFKLVF 363

Query: 731 ECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF---------------------------- 762
           E  K  GI +P KTR+D +GFG+VL E    +                            
Sbjct: 364 EGGKIVGIYDPTKTRIDHMGFGLVLQESTYDYEEEKKEGQEETKEIKKEQIKEEKKEETK 423

Query: 763 -----------KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE----------- 800
                      KTR G + KL  LLDE   R+L   K++N   +L   E           
Sbjct: 424 AAPKKKKVEKIKTREGKSTKLEALLDEAKNRALQIFKNRNEEHQLEGAEAVHKVQVEDSD 483

Query: 801 LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           L +  + +    IKY DL  NR  +YVFSFDKMLD RGNT VYL Y Y R+ SI R    
Sbjct: 484 LEKTAEILGISSIKYYDLKQNRIQNYVFSFDKMLDPRGNTGVYLQYMYVRVLSIMRKGNY 543

Query: 861 NSEDPPEPDPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQ 900
                  PD     +++      +K+ R+   T   L EQ
Sbjct: 544 T------PDKIHELMQNDKFVITSKSERELALTLLRLPEQ 577



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 98/199 (49%), Gaps = 18/199 (9%)

Query: 932  RSLDKLKDKNRHTELTPTE-----------LSEAQQAVAYGCIKYADLSHNRNLDYVFSF 980
            R+L   K++N   +L   E           L +  + +    IKY DL  NR  +YVFSF
Sbjct: 454  RALQIFKNRNEEHQLEGAEAVHKVQVEDSDLEKTAEILGISSIKYYDLKQNRIQNYVFSF 513

Query: 981  DKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLR 1040
            DKMLD RGNT VYL Y Y R+ SI R      + +    Q+    +  + E  LA TLLR
Sbjct: 514  DKMLDPRGNTGVYLQYMYVRVLSIMRKGNYTPDKIHELMQNDKFVITSKSERELALTLLR 573

Query: 1041 MNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEAT 1100
            + + + L   DL L+ L E LY+ +    EFY     I    E         R+LL EAT
Sbjct: 574  LPEQIDLALTDLQLNRLTELLYETAVKIGEFYQQNKVIGSQEE-------KSRILLLEAT 626

Query: 1101 AKVMKKCFDILNIRTVHKM 1119
             KVM + F +L ++T+ ++
Sbjct: 627  RKVMLQIFGLLGMKTIERI 645



 Score = 43.9 bits (102), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 22/156 (14%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +S+  +L  +   A  +A P L +K       N+ +     D+ C   + +  + K  G 
Sbjct: 2   LSLPKHLGGIIGKAALMALPGLNEKIQVTPERNKDW-----DYTCPSGIKIYNMNKKTG- 55

Query: 69  KKNPFDIAQSIASVVTSEL-ATNPSLAKVIDKIEAAKPG-----FVNVFLSRVY-AGEQM 121
               F   Q +A+ +   L   N ++ KV  K   A P      F+N+ L   +   E M
Sbjct: 56  -SFGFPTCQELANAIVQNLDHENSAIEKVELKQAGAGPADKAGFFLNISLKNEFIENEIM 114

Query: 122 KDIIVNGVQPPTLN------KKLRVLVDFSSPNIAR 151
           K  I++  Q    N      KK RV+VDFSSPNIA+
Sbjct: 115 K--ILHTEQLSVQNDEEEEAKKQRVVVDFSSPNIAK 148


>gi|294878710|ref|XP_002768460.1| arginyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239870913|gb|EER01178.1| arginyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 388

 Score =  297 bits (760), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 158/339 (46%), Positives = 218/339 (64%), Gaps = 26/339 (7%)

Query: 243 KFGDFQCNDAMALCKIFKD--KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAK 300
           KFGD+QCN+AM L K FK       K P  I + I S +  E           +   VA 
Sbjct: 39  KFGDYQCNNAMGLAKKFKSDLPDGMKIPKQIGEKIKSNLMEESPEE------FESATVAP 92

Query: 301 PGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIG 360
            GFV V LS  +  +Q+   +V      T  ++  V+VD SSPNIAKEMHVGHLRSTI+G
Sbjct: 93  AGFVTVKLSSGWIAKQLTSSVVENTI--TYWEEPSVIVDMSSPNIAKEMHVGHLRSTILG 150

Query: 361 DTISRLLEYLGHDVV--------------RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP 406
           +T+SR+LEY G+DV               R+NHVGDWGTQFGMLI H++D +PD+L  +P
Sbjct: 151 ETVSRILEYSGNDVCNNIINRSSIDSQVQRINHVGDWGTQFGMLIEHMKDAYPDFLNHTP 210

Query: 407 PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 466
            ++DLQ+FYK +KKRFDE+  FKKR+ + VVALQ  D   +KAW++ CD+SR+ F+++Y 
Sbjct: 211 EVSDLQSFYKAAKKRFDEEPDFKKRSQEEVVALQSGDEYARKAWQICCDISRKSFEEVYS 270

Query: 467 RLNVT-LTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGF 525
           RL +  L E+GESFY + +  +V  LEK+GL+   +G K ++  D   +PM +VKSDGG+
Sbjct: 271 RLGIEGLKEQGESFYNEMIGPIVEKLEKEGLVVESNGAKCIF-TDVDDVPMMVVKSDGGY 329

Query: 526 TYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
            YD++D+ A+  R+ +  AD +VY+TDLGQ VHF+ L E
Sbjct: 330 GYDSTDVTAVWYRLTQLHADEVVYITDLGQEVHFKKLFE 368



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/250 (41%), Positives = 142/250 (56%), Gaps = 65/250 (26%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVV--------------RLNHVGDWGTQFGMLIAHL 603
           H R    STI+G+T+SR+LEY G+DV               R+NHVGDWGTQFGMLI H+
Sbjct: 143 HLR----STILGETVSRILEYSGNDVCNNIINRSSIDSQVQRINHVGDWGTQFGMLIEHM 198

Query: 604 QDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMIC 663
           +D +PD+L  +P ++DLQ+FYK +KKRFDE+  FKKR+ + VVALQ  D   +KAW++ C
Sbjct: 199 KDAYPDFLNHTPEVSDLQSFYKAAKKRFDEEPDFKKRSQEEVVALQSGDEYARKAWQICC 258

Query: 664 DVSRRDFQKIYDRLNVT-LTERGESFYQKHMEQLVPYLEKKG------------------ 704
           D+SR+ F+++Y RL +  L E+GESFY + +  +V  LEK+G                  
Sbjct: 259 DISRKSFEEVYSRLGIEGLKEQGESFYNEMIGPIVEKLEKEGLVVESNGAKCIFTDVDDV 318

Query: 705 NLSLTKKLG-----------------------IVYVTDLGQGVHFRLLEECAKKA-GI-- 738
            + + K  G                       +VY+TDLGQ VHF+ L E AK A GI  
Sbjct: 319 PMMVVKSDGGYGYDSTDVTAVWYRLTQLHADEVVYITDLGQEVHFKKLFEVAKMAVGIIL 378

Query: 739 --LNPNKTRM 746
             LN N + +
Sbjct: 379 LKLNSNTSAL 388



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 47  KFGDFQCNDAMALCKIFKD--KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAK 104
           KFGD+QCN+AM L K FK       K P  I + I S +  E       A V      A 
Sbjct: 39  KFGDYQCNNAMGLAKKFKSDLPDGMKIPKQIGEKIKSNLMEESPEEFESATV------AP 92

Query: 105 PGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            GFV V LS  +  +Q+   +V      T  ++  V+VD SSPNIA++
Sbjct: 93  AGFVTVKLSSGWIAKQLTSSVVENTI--TYWEEPSVIVDMSSPNIAKE 138


>gi|340384496|ref|XP_003390748.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like, partial
           [Amphimedon queenslandica]
          Length = 273

 Score =  296 bits (759), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 143/236 (60%), Positives = 177/236 (75%), Gaps = 10/236 (4%)

Query: 243 KFGDFQCNDAMALCKIFK--DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAK 300
           KFGD++   AM + K  K  DK    NP DIA+ I          N S + +I+K EVA 
Sbjct: 46  KFGDYKSTIAMPIAKGLKNRDKESASNPKDIARKIIE--------NMSSSPLIEKCEVAG 97

Query: 301 PGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIG 360
           PGFVN++L   +  E I + + +GVQPP + K LRV+VDFSSPN+AKEMHVGHLRSTIIG
Sbjct: 98  PGFVNIYLKSSFISEVISNNLKHGVQPPVIAKSLRVVVDFSSPNVAKEMHVGHLRSTIIG 157

Query: 361 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK 420
           + I RLLE++GHDVVRLNH+GDWGTQFGMLIAHL+DKFP+Y T SPPI DL +FYKESKK
Sbjct: 158 ECICRLLEFVGHDVVRLNHIGDWGTQFGMLIAHLKDKFPNYTTVSPPIGDLHSFYKESKK 217

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 476
           RFD+D  FKKRAY  VV LQ+ DP+ +K W +ICDVSR++F++IYDRL + +TERG
Sbjct: 218 RFDDDPDFKKRAYADVVGLQQGDPEVRKGWSLICDVSRKEFEQIYDRLGIRITERG 273



 Score =  197 bits (500), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 104/121 (85%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+ I RLLE++GHDVVRLNH+GDWGTQFGMLIAHL+DKFP+Y T SPPI DL +FY
Sbjct: 153 STIIGECICRLLEFVGHDVVRLNHIGDWGTQFGMLIAHLKDKFPNYTTVSPPIGDLHSFY 212

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKKRFD+D  FKKRAY  VV LQ+ DP+ +K W +ICDVSR++F++IYDRL + +TER
Sbjct: 213 KESKKRFDDDPDFKKRAYADVVGLQQGDPEVRKGWSLICDVSRKEFEQIYDRLGIRITER 272

Query: 685 G 685
           G
Sbjct: 273 G 273



 Score = 83.2 bits (204), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 10/108 (9%)

Query: 47  KFGDFQCNDAMALCKIFK--DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAK 104
           KFGD++   AM + K  K  DK    NP DIA+ I          N S + +I+K E A 
Sbjct: 46  KFGDYKSTIAMPIAKGLKNRDKESASNPKDIARKIIE--------NMSSSPLIEKCEVAG 97

Query: 105 PGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           PGFVN++L   +  E + + + +GVQPP + K LRV+VDFSSPN+A++
Sbjct: 98  PGFVNIYLKSSFISEVISNNLKHGVQPPVIAKSLRVVVDFSSPNVAKE 145


>gi|412990264|emb|CCO19582.1| arginyl-tRNA synthetase [Bathycoccus prasinos]
          Length = 649

 Score =  296 bits (759), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 181/435 (41%), Positives = 252/435 (57%), Gaps = 43/435 (9%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG--EKKNP 268
           L  +FT AVQ A+PE         S NE      GD+Q NDAM L  + ++ G  + K+P
Sbjct: 75  LKSLFTQAVQAAYPE----NFKEVSLNECANSGLGDYQFNDAMHLFSVVREVGGCDVKSP 130

Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI---------KD 319
            ++AQ+I ++    L  NP      +   +A PGF+NV +S  Y   +I         ++
Sbjct: 131 REVAQNIINM----LPVNP----FFENPSIAGPGFINVKISDSYISSKILQNFNICEPRE 182

Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
             VN  +        RV+VDFSSPNIAKEMHVGHLRSTIIGD+I R+LEY   + +RLNH
Sbjct: 183 RRVNTAENVNYP---RVIVDFSSPNIAKEMHVGHLRSTIIGDSICRMLEYKNIETLRLNH 239

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           VGDWGTQFGMLI +L D+  D++     I DLQ+ YK +KKRFDED  FK R+   VV L
Sbjct: 240 VGDWGTQFGMLIEYLNDEHDDFV---DTIGDLQSCYKLAKKRFDEDTEFKIRSQAAVVKL 296

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  DP   + WE +C  SR +F+ IY+ LNV ++ERGESFY   +  ++  LE+K +   
Sbjct: 297 QAGDPKMLEIWENVCQTSRNEFETIYEALNVRISERGESFYNLMISGILEELEQKNIAVK 356

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
            +G   ++    G+ P+   KSDGG+ Y ++DLAAI  RI+ EKADW++YVTD GQ  HF
Sbjct: 357 SEGALCIFSSFEGT-PLICRKSDGGYNYASTDLAAINHRIKYEKADWVIYVTDSGQKKHF 415

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
             + ++T      +  LE      VRL+HVG     FG+++     +F    T+S  +  
Sbjct: 416 AGIFDAT----ERAGWLERCEKSDVRLSHVG-----FGLVMGEDGKRFR---TRSGEVIR 463

Query: 620 LQAFYKESKKR-FDE 633
           L+    E++ R +DE
Sbjct: 464 LKELLSEAESRCYDE 478



 Score =  252 bits (644), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 142/335 (42%), Positives = 197/335 (58%), Gaps = 50/335 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I R+LEY   + +RLNHVGDWGTQFGMLI +L D+  D++     I DLQ+ Y
Sbjct: 216 STIIGDSICRMLEYKNIETLRLNHVGDWGTQFGMLIEYLNDEHDDFV---DTIGDLQSCY 272

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K +KKRFDED  FK R+   VV LQ  DP   + WE +C  SR +F+ IY+ LNV ++ER
Sbjct: 273 KLAKKRFDEDTEFKIRSQAAVVKLQAGDPKMLEIWENVCQTSRNEFETIYEALNVRISER 332

Query: 685 GESFYQKHMEQLVPYLEKK-------GNLSL----------------------------- 708
           GESFY   +  ++  LE+K       G L +                             
Sbjct: 333 GESFYNLMISGILEELEQKNIAVKSEGALCIFSSFEGTPLICRKSDGGYNYASTDLAAIN 392

Query: 709 -----TKKLGIVYVTDLGQGVHFRLLEECAKKAGIL---NPNKTRMDFVGFGVVLGEDRK 760
                 K   ++YVTD GQ  HF  + +  ++AG L     +  R+  VGFG+V+GED K
Sbjct: 393 HRIKYEKADWVIYVTDSGQKKHFAGIFDATERAGWLERCEKSDVRLSHVGFGLVMGEDGK 452

Query: 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTE-LTPTELSEAQQAVAYGCIKYADLS 819
           +F+TRSG+ ++L ELL E   R  D+L  KNR T  L+  E+ +  + +  G IKYADL 
Sbjct: 453 RFRTRSGEVIRLKELLSEAESRCYDEL--KNRGTSGLSEIEMKQTARKLGIGAIKYADLQ 510

Query: 820 HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           +N + +YVFSFD+MLD +GNTA+YL YA+ R++++
Sbjct: 511 NNLSTNYVFSFDRMLDLKGNTAIYLQYAHVRVSAV 545



 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 113/191 (59%), Gaps = 18/191 (9%)

Query: 932  RSLDKLKDKNRHTE-LTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            R  D+LK  NR T  L+  E+ +  + +  G IKYADL +N + +YVFSFD+MLD +GNT
Sbjct: 474  RCYDELK--NRGTSGLSEIEMKQTARKLGIGAIKYADLQNNLSTNYVFSFDRMLDLKGNT 531

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTP--VSLEHEKEFALAKTLLRMNDVLMLV 1048
            A+YL YA+ R++++     I+ +++      TP     + ++E ALA  +L+  + L   
Sbjct: 532  AIYLQYAHVRVSAVLDKTQIDVQNV------TPQEFRFKAKEERALALHILKFAESLDSS 585

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             +DL    +C+YLY +S+ F++FY +C  I  D E         R++L  ATA VM++CF
Sbjct: 586  LQDLMPSRICDYLYTLSSLFNDFYGSCKVIGDDNE-------ESRIILCHATASVMRRCF 638

Query: 1109 DILNIRTVHKM 1119
             IL I  V+K+
Sbjct: 639  FILGIDPVYKL 649



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 24/159 (15%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG--EKKNP 72
           L  +FT AVQ A+PE         S NE      GD+Q NDAM L  + ++ G  + K+P
Sbjct: 75  LKSLFTQAVQAAYPE----NFKEVSLNECANSGLGDYQFNDAMHLFSVVREVGGCDVKSP 130

Query: 73  FDIAQSIASVV-TSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQ-MKDIIVNGVQ 130
            ++AQ+I +++  +    NPS+A          PGF+NV +S  Y   + +++  +   +
Sbjct: 131 REVAQNIINMLPVNPFFENPSIAG---------PGFINVKISDSYISSKILQNFNICEPR 181

Query: 131 PPTLNKKL-----RVLVDFSSPNIARKGGFLYPHLPSQI 164
              +N        RV+VDFSSPNIA++      HL S I
Sbjct: 182 ERRVNTAENVNYPRVIVDFSSPNIAKE--MHVGHLRSTI 218


>gi|428222915|ref|YP_007107085.1| arginyl-tRNA synthetase [Synechococcus sp. PCC 7502]
 gi|427996255|gb|AFY74950.1| arginyl-tRNA synthetase [Synechococcus sp. PCC 7502]
          Length = 582

 Score =  296 bits (759), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 163/354 (46%), Positives = 227/354 (64%), Gaps = 40/354 (11%)

Query: 229 KTASVASTNEKYVH-----------KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIAS 277
           +TA V +  E+Y+            +FGD+QCN A++L K  K K +       AQ I  
Sbjct: 14  QTACVKAFGEEYLGIDPSVSVAKDLRFGDYQCNAALSLSKRLKQKPQAIA----AQIIQH 69

Query: 278 VVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN-----GVQPPTLNK 332
           +  S+L   PS         +  PGF+NV L   +   ++   +VN     G++  T N+
Sbjct: 70  LTISDLGEAPS---------IDGPGFINVKLKPEFLASRLA--VVNSGDRLGIEE-TRNR 117

Query: 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 392
           + R++VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ GH+V+RLNHVGDWGTQFGMLI 
Sbjct: 118 Q-RIIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFQGHEVLRLNHVGDWGTQFGMLIT 176

Query: 393 HLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAW 450
           +L++ +P  LT+S    + DL A Y+ +KKRFDEDE FK+ +   VV LQ   P+    W
Sbjct: 177 YLKEVYPRALTESDALDLGDLVALYRAAKKRFDEDEQFKEASRLAVVDLQSGQPEATFCW 236

Query: 451 EMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--- 507
           +++CD SRR+FQKIYD L++ +TERGESFY  ++  +V  L+  GLLE  +G   ++   
Sbjct: 237 QLLCDQSRREFQKIYDALDIKITERGESFYSPYLASVVEDLQALGLLEKSEGALCVFLDG 296

Query: 508 --GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
              ++   +P+ I KSDGG+ Y T+DLAAIR RI+E+KA+ I+YVTD+GQ  HF
Sbjct: 297 FTNKEGDRLPLIIQKSDGGYNYATTDLAAIRYRIQEDKAERIIYVTDMGQSSHF 350



 Score =  281 bits (719), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/346 (45%), Positives = 205/346 (59%), Gaps = 52/346 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+ GH+V+RLNHVGDWGTQFGMLI +L++ +P  LT+S  +   DL A
Sbjct: 140 STIIGDCIARILEFQGHEVLRLNHVGDWGTQFGMLITYLKEVYPRALTESDALDLGDLVA 199

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
            Y+ +KKRFDEDE FK+ +   VV LQ   P+    W+++CD SRR+FQKIYD L++ +T
Sbjct: 200 LYRAAKKRFDEDEQFKEASRLAVVDLQSGQPEATFCWQLLCDQSRREFQKIYDALDIKIT 259

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY  ++  +V  L+  G L              T K G                 
Sbjct: 260 ERGESFYSPYLASVVEDLQALGLLEKSEGALCVFLDGFTNKEGDRLPLIIQKSDGGYNYA 319

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD+GQ  HF  + + A++A  L  N T++  V FG+VL
Sbjct: 320 TTDLAAIRYRIQEDKAERIIYVTDMGQSSHFEQVFQVARRANWLTDN-TKVIHVPFGLVL 378

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           GED KK KTRSGDTV+L ELLDE + R    L+ +N   E   T   E  +AV  G +KY
Sbjct: 379 GEDGKKLKTRSGDTVRLQELLDEAIARVKTDLETRN--PEFNDTYKQEVAEAVGLGAVKY 436

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           ADLS NR  +Y FSFDKML  +GNTA Y+LYAY RI  I+R   ++
Sbjct: 437 ADLSQNRTSNYAFSFDKMLSLQGNTAPYMLYAYVRIRGISRKGALD 482



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 12/182 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + R+ E   T   E  +AV  G +KYADLS NR  +Y FSFDKML  +GNTA Y+LYAY 
Sbjct: 411  ETRNPEFNDTYKQEVAEAVGLGAVKYADLSQNRTSNYAFSFDKMLSLQGNTAPYMLYAYV 470

Query: 1000 RIASIARTAGI--NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHL 1057
            RI  I+R   +  +SE+      S  ++L+HE E ALAK L+++ +++  V+ DL  + L
Sbjct: 471  RIRGISRKGALDFDSENF-----SAAIALKHELELALAKHLIQLPEIIDAVSEDLMPNRL 525

Query: 1058 CEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVH 1117
            C YL+++S  F++FYD C  ++ +   ++      RLLL   TAK +K    +L IR + 
Sbjct: 526  CLYLFELSQKFNQFYDQCPVLQAEDSDRL-----SRLLLCHVTAKTLKLGLGLLGIRVLE 580

Query: 1118 KM 1119
            KM
Sbjct: 581  KM 582



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 33/136 (24%)

Query: 33  KTASVASTNEKYVH-----------KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIAS 81
           +TA V +  E+Y+            +FGD+QCN A++L K  K K +       AQ I  
Sbjct: 14  QTACVKAFGEEYLGIDPSVSVAKDLRFGDYQCNAALSLSKRLKQKPQAI----AAQIIQH 69

Query: 82  VVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN-----GVQPPTLNK 136
           +  S+L   PS    ID      PGF+NV L   +   ++   +VN     G++  T N+
Sbjct: 70  LTISDLGEAPS----ID-----GPGFINVKLKPEFLASRLA--VVNSGDRLGIE-ETRNR 117

Query: 137 KLRVLVDFSSPNIARK 152
           + R++VDFSSPNIA++
Sbjct: 118 Q-RIIVDFSSPNIAKE 132


>gi|87123553|ref|ZP_01079404.1| arginyl-tRNA synthetase [Synechococcus sp. RS9917]
 gi|86169273|gb|EAQ70529.1| arginyl-tRNA synthetase [Synechococcus sp. RS9917]
          Length = 605

 Score =  296 bits (759), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 161/332 (48%), Positives = 217/332 (65%), Gaps = 27/332 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGDFQ N A+ L K  K            + IAS +  +L  +PS + +  +  +A PG
Sbjct: 45  EFGDFQANGALPLAKPLKQA---------PRQIASAIVEQLQADPSFSALCLEPVIAGPG 95

Query: 303 FVNVFL--SRVYA--GEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N+ L   R+ A   E++ D  + GV  P +     V+VDFSSPNIAKEMHVGHLRSTI
Sbjct: 96  FINLTLRPERLAAEVAERLGDPRL-GV--PAVQGSAPVVVDFSSPNIAKEMHVGHLRSTI 152

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYK 416
           IGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL AFY+
Sbjct: 153 IGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALDTADAVDLGDLVAFYR 212

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 476
           E+KKRFD+DE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+ERG
Sbjct: 213 EAKKRFDDDEAFQTTSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIHLSERG 272

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSD 531
           ESFY  ++E +V  LE  GLL +DDG + ++     G+D   +P+ + KSDGGF Y T+D
Sbjct: 273 ESFYNPYLEGVVTDLEAAGLLAVDDGARCVFLEGVSGKDGKPLPVIVQKSDGGFNYATTD 332

Query: 532 LAAIRQRI----EEEKADWIVYVTDLGQGVHF 559
           LAAIR R     + + A  ++YVTD GQ  HF
Sbjct: 333 LAAIRYRFGGAPDGDGARRVIYVTDAGQANHF 364



 Score =  265 bits (678), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 150/347 (43%), Positives = 203/347 (58%), Gaps = 56/347 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL A
Sbjct: 150 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALDTADAVDLGDLVA 209

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFD+DE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+
Sbjct: 210 FYREAKKRFDDDEAFQTTSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIHLS 269

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------------------------------ 706
           ERGESFY  ++E +V  LE  G L                                    
Sbjct: 270 ERGESFYNPYLEGVVTDLEAAGLLAVDDGARCVFLEGVSGKDGKPLPVIVQKSDGGFNYA 329

Query: 707 -----SLTKKLG----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                ++  + G          ++YVTD GQ  HF  + + A++AG + P+  R++ V F
Sbjct: 330 TTDLAAIRYRFGGAPDGDGARRVIYVTDAGQANHFAGVFQVARRAGWV-PDDGRLEHVPF 388

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V G+D KK KTR+GDTV+L +LLDE + R+   L+ +      +  E  +      V 
Sbjct: 389 GLVQGDDGKKLKTRAGDTVRLRDLLDEAVERAEADLRRRLEEEGRSEDEAFIQHVATTVG 448

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR
Sbjct: 449 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIAR 495



 Score =  103 bits (256), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 92/164 (56%), Gaps = 7/164 (4%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G  +     
Sbjct: 447  VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGGDLALAGAG 506

Query: 1018 AAQSTPVSL--EHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1075
            AA  +   L     +E+AL + LLR + V+  V  +L  + LC YL+++S  F+ FYD  
Sbjct: 507  AAAGSGSDLHFNEPQEWALVRELLRFDAVIAEVEEELLPNRLCTYLFELSQVFNRFYDQV 566

Query: 1076 YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              ++  AEG   T+ + RL L   TA  +K    +L I T+ +M
Sbjct: 567  PVLK--AEG--ATLRS-RLALCRLTADTLKCGLGLLGIATLERM 605



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 16/110 (14%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGDFQ N A+ L K  K            + IAS +  +L  +PS + +  +   A PG
Sbjct: 45  EFGDFQANGALPLAKPLKQA---------PRQIASAIVEQLQADPSFSALCLEPVIAGPG 95

Query: 107 FVNVFL--SRVYA--GEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   R+ A   E++ D  + GV  P +     V+VDFSSPNIA++
Sbjct: 96  FINLTLRPERLAAEVAERLGDPRL-GV--PAVQGSAPVVVDFSSPNIAKE 142


>gi|338734098|ref|YP_004672571.1| arginyl-tRNA synthetase [Simkania negevensis Z]
 gi|336483481|emb|CCB90080.1| arginyl-tRNA synthetase [Simkania negevensis Z]
          Length = 584

 Score =  296 bits (758), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 225/363 (61%), Gaps = 25/363 (6%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           L +  T  ++  FP+    +   A        KFG +QCN AM L KI K      NP +
Sbjct: 8   LQNQATKILKQCFPDEDISSCLPADITPSTQDKFGHYQCNSAMKLGKILK-----TNPRN 62

Query: 271 IAQSIASVVTSELATNPSLAK-VIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQ 326
           +A  I       L     L   +ID  E+A PGF+N+ L+  +  +++  +I +   GV 
Sbjct: 63  VALQI-------LEKWEGLKDGMIDSFEIAGPGFINITLTDTFLSKELTAVIADERLGV- 114

Query: 327 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 386
            P L +K +++V+FSSPN+AKE+HVGHLRST+IGD ++RL E+LGHDV+RLNH+GDWGTQ
Sbjct: 115 -PPLKEKKKIIVEFSSPNVAKELHVGHLRSTVIGDALARLFEFLGHDVLRLNHIGDWGTQ 173

Query: 387 FGMLIAHLQDKFPDYLT--KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           FGMLI +L+++    L+  +   +  L  +Y+ESKK FD D  FKKRA   VV LQ  +P
Sbjct: 174 FGMLITYLKEQHAGVLSNDEKADLPSLMNWYRESKKCFDADPEFKKRAQLQVVELQSGEP 233

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
               AWE IC++SR  FQ+IYD L+V L ERGESFY   + Q++   E KGL+E+ DG K
Sbjct: 234 AALAAWEKICEISRLGFQEIYDFLDVKLVERGESFYNPKLSQVIKDYEAKGLIEVSDGAK 293

Query: 505 IMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
            ++ E     D   +PM + KSDGG+ Y T+D AA+  R+ EEKAD I+YV D GQ +HF
Sbjct: 294 CVFLEGFTAKDDKPLPMILQKSDGGYNYATTDAAAVHHRVTEEKADRIIYVVDAGQQLHF 353

Query: 560 RLL 562
           +++
Sbjct: 354 QMV 356



 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 146/348 (41%), Positives = 198/348 (56%), Gaps = 51/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT--KSPPIADLQA 622
           ST+IGD ++RL E+LGHDV+RLNH+GDWGTQFGMLI +L+++    L+  +   +  L  
Sbjct: 143 STVIGDALARLFEFLGHDVLRLNHIGDWGTQFGMLITYLKEQHAGVLSNDEKADLPSLMN 202

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           +Y+ESKK FD D  FKKRA   VV LQ  +P    AWE IC++SR  FQ+IYD L+V L 
Sbjct: 203 WYRESKKCFDADPEFKKRAQLQVVELQSGEPAALAAWEKICEISRLGFQEIYDFLDVKLV 262

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSLT--------------------------------- 709
           ERGESFY   + Q++   E KG + ++                                 
Sbjct: 263 ERGESFYNPKLSQVIKDYEAKGLIEVSDGAKCVFLEGFTAKDDKPLPMILQKSDGGYNYA 322

Query: 710 --------------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                         K   I+YV D GQ +HF+++ + A KAG  +P K +++ V FGVVL
Sbjct: 323 TTDAAAVHHRVTEEKADRIIYVVDAGQQLHFQMVFQGAAKAGYYDPAKVQLEHVAFGVVL 382

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           G D KKFKTRSG+T KL +LL + +  +   L++  R  + TP E+ E    +    +KY
Sbjct: 383 GPDGKKFKTRSGETEKLIDLLQKAVDYAKKILQE--RLEDATPKEIEELAHTLGVDAVKY 440

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           ADLS +R  DYVFS+D+ML   GNTA +LLYAY RI  I R    + E
Sbjct: 441 ADLSCHRVKDYVFSYDRMLKFEGNTAAFLLYAYVRIQGIKRKVSKDVE 488



 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 12/192 (6%)

Query: 930  LRRSLDKLKD--KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDR 987
            L++++D  K   + R  + TP E+ E    +    +KYADLS +R  DYVFS+D+ML   
Sbjct: 403  LQKAVDYAKKILQERLEDATPKEIEELAHTLGVDAVKYADLSCHRVKDYVFSYDRMLKFE 462

Query: 988  GNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLML 1047
            GNTA +LLYAY RI  I R     S+D+     + P+ L+H  E AL   L R  + L L
Sbjct: 463  GNTAAFLLYAYVRIQGIKRKV---SKDVEAVVLTAPIVLKHPTEVALGLHLRRFGETLEL 519

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
            + RDL  + L +YLY+++  F  F+ +C  +E   E         RL+L E TA+++K  
Sbjct: 520  MDRDLLPNRLSDYLYELAEKFHAFFRDCR-VEGVPE------ENSRLVLCELTARILKTG 572

Query: 1108 FDILNIRTVHKM 1119
             +IL ++T+ +M
Sbjct: 573  LNILGLKTMPRM 584



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 18/142 (12%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           L +  T  ++  FP+    +   A        KFG +QCN AM L KI      K NP +
Sbjct: 8   LQNQATKILKQCFPDEDISSCLPADITPSTQDKFGHYQCNSAMKLGKIL-----KTNPRN 62

Query: 75  IAQSIASVVTSELATNPSLAK-VIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQ 130
           +A  I       L     L   +ID  E A PGF+N+ L+  +  +++  +I +   GV 
Sbjct: 63  VALQI-------LEKWEGLKDGMIDSFEIAGPGFINITLTDTFLSKELTAVIADERLGV- 114

Query: 131 PPTLNKKLRVLVDFSSPNIARK 152
            P L +K +++V+FSSPN+A++
Sbjct: 115 -PPLKEKKKIIVEFSSPNVAKE 135


>gi|428318220|ref|YP_007116102.1| arginyl-tRNA synthetase [Oscillatoria nigro-viridis PCC 7112]
 gi|428241900|gb|AFZ07686.1| arginyl-tRNA synthetase [Oscillatoria nigro-viridis PCC 7112]
          Length = 585

 Score =  296 bits (758), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 166/366 (45%), Positives = 224/366 (61%), Gaps = 31/366 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           S+   L   F  A   AF E   G      A++N      FGDFQCN AM+L K      
Sbjct: 3   SIAQQLKAKFEKAFTAAFGESYAGADPMLAAASNPN----FGDFQCNAAMSLGKKLG--- 55

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
             K P  IA +I          N  +A + +  E+A PGF+N+ L   Y   QI  I  +
Sbjct: 56  --KPPRAIASTIIE--------NLDIADICETPEIAGPGFINLKLKPAYLEAQISAIAAD 105

Query: 324 ---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
              G++P    +   + +DFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ GHDV+R+NH+
Sbjct: 106 SRLGIEPAKTPQT--IAIDFSSPNIAKEMHVGHLRSTIIGDAIARILEFQGHDVLRINHI 163

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLIA+L++  P+ LT +    + DL AFY+++K+RFD DE FK+ A Q VV 
Sbjct: 164 GDWGTQFGMLIAYLREVHPEALTTADALDLGDLVAFYRQAKQRFDTDETFKETARQEVVK 223

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ    D ++AW+++CD SRR+FQ IYD L++ LTERGESFY   +  +V  L   GLL 
Sbjct: 224 LQAGAEDTRRAWKLLCDQSRREFQVIYDLLDIKLTERGESFYNPLLPAVVEDLTNLGLLV 283

Query: 499 LDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
             DG K ++ E     +   +P+ + K+DGG+ Y T+DLAA+R RI+E+ A  ++YVTD 
Sbjct: 284 ESDGAKCVFVEGFTNKEGEPLPLIVQKTDGGYNYATTDLAAVRYRIKEDGAKRLIYVTDS 343

Query: 554 GQGVHF 559
           GQ  HF
Sbjct: 344 GQANHF 349



 Score =  272 bits (696), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 153/348 (43%), Positives = 205/348 (58%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+ GHDV+R+NH+GDWGTQFGMLIA+L++  P+ LT +  +   DL A
Sbjct: 139 STIIGDAIARILEFQGHDVLRINHIGDWGTQFGMLIAYLREVHPEALTTADALDLGDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD DE FK+ A Q VV LQ    D ++AW+++CD SRR+FQ IYD L++ LT
Sbjct: 199 FYRQAKQRFDTDETFKETARQEVVKLQAGAEDTRRAWKLLCDQSRREFQVIYDLLDIKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L   G L              T K G                 
Sbjct: 259 ERGESFYNPLLPAVVEDLTNLGLLVESDGAKCVFVEGFTNKEGEPLPLIVQKTDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++YVTD GQ  HF  +   AKKAG + P    +  V FG+VL
Sbjct: 319 TTDLAAVRYRIKEDGAKRLIYVTDSGQANHFAQVFAVAKKAGWI-PEDVEIVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLDE + R+   L+++ +  E   TE  ++   + V    +
Sbjct: 378 GEDGKKLKTRSGETVRLQDLLDEAIVRTRQDLEERLKAEERQETEEFIANVSRTVGLSAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  +Y+FS+DKML  +GNTA Y+LYAY R+  I R   IN
Sbjct: 438 KYADLSQNRASNYIFSYDKMLALQGNTAPYMLYAYVRVQGIRRKGEIN 485



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 115/190 (60%), Gaps = 10/190 (5%)

Query: 932  RSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            R+   L+++ +  E   TE  ++   + V    +KYADLS NR  +Y+FS+DKML  +GN
Sbjct: 404  RTRQDLEERLKAEERQETEEFIANVSRTVGLSAVKYADLSQNRASNYIFSYDKMLALQGN 463

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA Y+LYAY R+  I R   IN ++L   A+   V L+ + E  LAK LL++N+V+  V 
Sbjct: 464  TAPYMLYAYVRVQGIRRKGEINFDNLDAGAK---VILQSDAELVLAKHLLQLNEVVNAVG 520

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             DL  + +C+YL+++S  F++F++ C  ++ +     + + T RL+L + TA+ +K   +
Sbjct: 521  GDLLPNRICQYLFELSQKFNQFFEQCPVLQSE-----EPLRTSRLVLCDLTARTLKLGLE 575

Query: 1110 ILNIRTVHKM 1119
            +L I+ + +M
Sbjct: 576  LLGIKVLERM 585



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 78/177 (44%), Gaps = 30/177 (16%)

Query: 10  SVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           S+   L   F  A   AF E   G      A++N      FGDFQCN AM+L K      
Sbjct: 3   SIAQQLKAKFEKAFTAAFGESYAGADPMLAAASNPN----FGDFQCNAAMSLGKKLG--- 55

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
             K P  IA +I          N  +A + +  E A PGF+N+ L   Y   Q+  I  +
Sbjct: 56  --KPPRAIASTIIE--------NLDIADICETPEIAGPGFINLKLKPAYLEAQISAIAAD 105

Query: 128 ---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQG 181
              G++P    +   + +DFSSPNIA++      HL S I    I  AIA   + QG
Sbjct: 106 SRLGIEPAKTPQT--IAIDFSSPNIAKE--MHVGHLRSTI----IGDAIARILEFQG 154


>gi|443478276|ref|ZP_21068050.1| arginyl-tRNA synthetase [Pseudanabaena biceps PCC 7429]
 gi|443016466|gb|ELS31121.1| arginyl-tRNA synthetase [Pseudanabaena biceps PCC 7429]
          Length = 580

 Score =  296 bits (758), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 166/354 (46%), Positives = 226/354 (63%), Gaps = 27/354 (7%)

Query: 216 THAVQVAFPELGDK-TASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIA-Q 273
           + A+  AF E  D    +VA + +    KFGD+QCN A+ L K  K K     P D+A Q
Sbjct: 14  SKAIAAAFGEAYDNYDPAVAPSKDA---KFGDYQCNAALGLTKKLKQK-----PQDVAAQ 65

Query: 274 SIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII-VNGVQPPTLNK 332
            IA++   ++   P+         +A  GF+N+ L   Y   Q+  +   + +    ++K
Sbjct: 66  IIANLQVDDIFEPPT---------IAGAGFINLKLKLSYLETQLAKMQKSDRLAIAKVDK 116

Query: 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 392
             RV+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GH+V+RLNHVGDWGTQFGMLI 
Sbjct: 117 PERVIVDFSSPNIAKEMHVGHLRSTIIGDSIARILEFQGHEVLRLNHVGDWGTQFGMLIT 176

Query: 393 HLQDKFPDYLTKSPPIA--DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAW 450
           +L++ +PD LTK+  IA  DL   Y+ +KKRFDED  FK+ +   VV LQ    + K AW
Sbjct: 177 YLREVYPDALTKADAIAIGDLVELYRAAKKRFDEDAEFKEISRAAVVELQAGGAEAKLAW 236

Query: 451 EMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE- 509
           +++C+ SRR+FQKIYD LN+ L ERGESFY   +  +V  L + GLL+ D G   ++ E 
Sbjct: 237 QLLCEQSRREFQKIYDTLNIQLEERGESFYNAFLADVVTDLRETGLLQEDQGALCVFLEG 296

Query: 510 ----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
               D   +P+ I K+DGG+ Y T+DLAA+R RI E+KA  I+YVTD+GQ  HF
Sbjct: 297 FSNKDGQPLPLIIQKTDGGYNYATTDLAALRYRINEDKATRIIYVTDIGQAGHF 350



 Score =  269 bits (687), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 153/350 (43%), Positives = 203/350 (58%), Gaps = 60/350 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA--DLQA 622
           STIIGD+I+R+LE+ GH+V+RLNHVGDWGTQFGMLI +L++ +PD LTK+  IA  DL  
Sbjct: 140 STIIGDSIARILEFQGHEVLRLNHVGDWGTQFGMLITYLREVYPDALTKADAIAIGDLVE 199

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
            Y+ +KKRFDED  FK+ +   VV LQ    + K AW+++C+ SRR+FQKIYD LN+ L 
Sbjct: 200 LYRAAKKRFDEDAEFKEISRAAVVELQAGGAEAKLAWQLLCEQSRREFQKIYDTLNIQLE 259

Query: 683 ERGESFYQKHMEQLVPYLEKKG-----------------------------------NLS 707
           ERGESFY   +  +V  L + G                                   N +
Sbjct: 260 ERGESFYNAFLADVVTDLRETGLLQEDQGALCVFLEGFSNKDGQPLPLIIQKTDGGYNYA 319

Query: 708 LT------------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
            T            K   I+YVTD+GQ  HF  + + AK+A  + P   +   V FG+V+
Sbjct: 320 TTDLAALRYRINEDKATRIIYVTDIGQAGHFAQVFQVAKRANWI-PETVQTTHVPFGLVM 378

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ----AVAYG 811
           GED KKFKTRSGDT+ L  LL+E + R+   ++ +N      P    E +Q    AV  G
Sbjct: 379 GEDGKKFKTRSGDTIALKSLLEEAVVRARTDIEIRN------PDASDEFKQDVAEAVGLG 432

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            +KYADLS NR  +Y+FSFDKML  +GNTA Y+LYAY R+  I R   I+
Sbjct: 433 AVKYADLSQNRTSNYIFSFDKMLALQGNTAPYMLYAYVRVQGIGRKGEID 482



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 10/164 (6%)

Query: 956  QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL 1015
            +AV  G +KYADLS NR  +Y+FSFDKML  +GNTA Y+LYAY R+  I R   I+   L
Sbjct: 427  EAVGLGAVKYADLSQNRTSNYIFSFDKMLALQGNTAPYMLYAYVRVQGIGRKGEIDFTSL 486

Query: 1016 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1075
              A     + L  + E  LAK LL+  + +  V  +L  + LC+YL+++S  F++F++ C
Sbjct: 487  DAA-----IHLTQDPEIVLAKHLLQFAEAIDAVAEELFPNRLCQYLFELSQKFNQFFEQC 541

Query: 1076 YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              ++ +   +I      RL L + TAK +K   ++L IR + +M
Sbjct: 542  PVLQAEESERI-----SRLSLCDITAKTLKLGLNLLGIRVLERM 580



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 20/136 (14%)

Query: 20  THAVQVAFPELGDK-TASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDI-AQ 77
           + A+  AF E  D    +VA + +    KFGD+QCN A+ L K  K K     P D+ AQ
Sbjct: 14  SKAIAAAFGEAYDNYDPAVAPSKDA---KFGDYQCNAALGLTKKLKQK-----PQDVAAQ 65

Query: 78  SIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII-VNGVQPPTLNK 136
            IA++   ++   P++A           GF+N+ L   Y   Q+  +   + +    ++K
Sbjct: 66  IIANLQVDDIFEPPTIAGA---------GFINLKLKLSYLETQLAKMQKSDRLAIAKVDK 116

Query: 137 KLRVLVDFSSPNIARK 152
             RV+VDFSSPNIA++
Sbjct: 117 PERVIVDFSSPNIAKE 132


>gi|254432045|ref|ZP_05045748.1| arginyl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197626498|gb|EDY39057.1| arginyl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 604

 Score =  296 bits (757), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 157/334 (47%), Positives = 215/334 (64%), Gaps = 26/334 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGDFQ N A+ L K  K            ++IA+ +  +L  +P+ A++  + ++A PG
Sbjct: 45  EFGDFQANGALPLAKPLKQP---------PRAIATAIVEQLKADPTFAELCGEPQIAGPG 95

Query: 303 FVNVFL--SRVYA--GEQIKD--IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+ L   R+ A   E++ D  + V     P   +   V+VDFSSPNIAKEMHVGHLRS
Sbjct: 96  FINLTLRPERLAAEVAERLADPRLGVPSAAGPGGEEPAPVVVDFSSPNIAKEMHVGHLRS 155

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAF 414
           TIIGD ++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ LT +  +   DL AF
Sbjct: 156 TIIGDALARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALTTADAVDLGDLVAF 215

Query: 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 474
           Y+++K RFD DE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+E
Sbjct: 216 YRQAKARFDADEAFQATSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLSE 275

Query: 475 RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDT 529
           RGESFY  ++E +V  LE  GLL  D G + ++     G+D   +P+ + KSDGGF Y T
Sbjct: 276 RGESFYNPYLEAVVADLEAAGLLVTDAGARCVFLEGVSGKDGQPLPVIVQKSDGGFNYAT 335

Query: 530 SDLAAIRQRI----EEEKADWIVYVTDLGQGVHF 559
           +DLAAIR R     + + A  ++YVTD GQ  HF
Sbjct: 336 TDLAAIRYRFAPPPQGDGARRVIYVTDAGQASHF 369



 Score =  274 bits (701), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 154/350 (44%), Positives = 203/350 (58%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD ++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ LT +  +   DL A
Sbjct: 155 STIIGDALARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALTTADAVDLGDLVA 214

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K RFD DE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+
Sbjct: 215 FYRQAKARFDADEAFQATSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLS 274

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY  ++E +V  LE  G L             ++ K G                 
Sbjct: 275 ERGESFYNPYLEAVVADLEAAGLLVTDAGARCVFLEGVSGKDGQPLPVIVQKSDGGFNYA 334

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 ++YVTD GQ  HF  + + A++AG + P   R++ V F
Sbjct: 335 TTDLAAIRYRFAPPPQGDGARRVIYVTDAGQASHFAGVFQVARRAGWV-PTGARLEHVPF 393

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L +LLDE + R+   L+ + +  E T  E  +      V 
Sbjct: 394 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERAEADLRRRLQEEERTEDEAFIEHVATTVG 453

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 454 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 503



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 92/162 (56%), Gaps = 9/162 (5%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G    DL  
Sbjct: 452  VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLEG 507

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
            A +++ +     +E+ALA+ LL+ + V+  V  +L  + LC YL+++S  F+ FYD    
Sbjct: 508  AVEASSLRFSEPQEWALARELLKFDAVVAEVEEELLPNRLCSYLFELSQVFNRFYDQVPV 567

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ + E     V   RL L   TA  ++    +L I T+ +M
Sbjct: 568  LKAEPE-----VRAARLALCRLTADTLRLGLGLLGIPTLERM 604



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 15/112 (13%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGDFQ N A+ L K  K            ++IA+ +  +L  +P+ A++  + + A PG
Sbjct: 45  EFGDFQANGALPLAKPLKQP---------PRAIATAIVEQLKADPTFAELCGEPQIAGPG 95

Query: 107 FVNVFL--SRVYA--GEQMKD--IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   R+ A   E++ D  + V     P   +   V+VDFSSPNIA++
Sbjct: 96  FINLTLRPERLAAEVAERLADPRLGVPSAAGPGGEEPAPVVVDFSSPNIAKE 147


>gi|148243340|ref|YP_001228497.1| arginyl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|166228634|sp|A5GW85.1|SYR_SYNR3 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|147851650|emb|CAK29144.1| Arginyl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 590

 Score =  295 bits (755), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 160/358 (44%), Positives = 219/358 (61%), Gaps = 32/358 (8%)

Query: 218 AVQVAFPEL-GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIA 276
           A+Q AFPE  G+   ++   ++    +FGDFQ N A+AL K  K            + IA
Sbjct: 15  AMQQAFPEADGELNPALGPASKP---EFGDFQANGALALAKPLKQA---------PRQIA 62

Query: 277 SVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLN----- 331
           + +  +L  NP  + + +  ++A PGF+N+ L       +++  I +    P L      
Sbjct: 63  AAIVEQLQNNPEFSALAEAPQIAGPGFINITLKPSVLAAEVRQRIGD----PRLGVAAVE 118

Query: 332 -KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 390
             +  V+VDFSSPNIAKEMHVGHLRSTIIGD ++R+LE+ GH V+RLNHVGDWGTQFGML
Sbjct: 119 QAEAPVIVDFSSPNIAKEMHVGHLRSTIIGDCLARVLEFRGHQVLRLNHVGDWGTQFGML 178

Query: 391 IAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
           I HL+   P+ L  +  I   DL AFY+E+KKRFD+DE F+  + + VV LQ  D    K
Sbjct: 179 ITHLKQVAPEALNTADAIDLGDLVAFYREAKKRFDDDEAFQTTSREEVVKLQGGDATSLK 238

Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW- 507
           AW ++CD SRR+FQKIYDRL++ L ERGESFY   +  +V  L   GLL  D+G   ++ 
Sbjct: 239 AWGLLCDQSRREFQKIYDRLDIRLNERGESFYNPQLAAVVDDLRSSGLLVTDEGAGCVFL 298

Query: 508 ----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEE--EKADWIVYVTDLGQGVHF 559
               G++   +P+ + KSDGGF Y T+DLAAIR R+    + A  ++YVTD GQ  HF
Sbjct: 299 EGVVGKEGKPLPLIVQKSDGGFNYATTDLAAIRYRLGSAGDGAGRVIYVTDAGQAAHF 356



 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 166/409 (40%), Positives = 224/409 (54%), Gaps = 68/409 (16%)

Query: 525 FTYDTSDLAA-IRQRIEE--------EKADWIVYV----TDLGQGVHFRLLEESTIIGDT 571
            T   S LAA +RQRI +        E+A+  V V     ++ + +H   L  STIIGD 
Sbjct: 92  ITLKPSVLAAEVRQRIGDPRLGVAAVEQAEAPVIVDFSSPNIAKEMHVGHLR-STIIGDC 150

Query: 572 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKK 629
           ++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  I   DL AFY+E+KK
Sbjct: 151 LARVLEFRGHQVLRLNHVGDWGTQFGMLITHLKQVAPEALNTADAIDLGDLVAFYREAKK 210

Query: 630 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFY 689
           RFD+DE F+  + + VV LQ  D    KAW ++CD SRR+FQKIYDRL++ L ERGESFY
Sbjct: 211 RFDDDEAFQTTSREEVVKLQGGDATSLKAWGLLCDQSRREFQKIYDRLDIRLNERGESFY 270

Query: 690 QKHMEQLVPYLEKKGNL-----------------------------------------SL 708
              +  +V  L   G L                                         ++
Sbjct: 271 NPQLAAVVDDLRSSGLLVTDEGAGCVFLEGVVGKEGKPLPLIVQKSDGGFNYATTDLAAI 330

Query: 709 TKKLG--------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 760
             +LG        ++YVTD GQ  HF  + + AK+AG + P    ++ V FG+V G+D K
Sbjct: 331 RYRLGSAGDGAGRVIYVTDAGQAAHFAGVFQVAKRAGWV-PAAASLEHVPFGLVQGDDGK 389

Query: 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADL 818
           K KTR+GDTV+L +LLDE + R+   L+ +    E   +E  + +    V    +KYADL
Sbjct: 390 KLKTRAGDTVRLKDLLDEAVERAQADLRRRLEEEERQESESFIDQVATTVGLAAVKYADL 449

Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           S NR  +Y FSF++ML   GNTA YLLYA  RI+ IAR  G    + PE
Sbjct: 450 STNRITNYQFSFERMLALTGNTAPYLLYAVVRISGIARKGGALDGELPE 498



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 89/162 (54%), Gaps = 10/162 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSF++ML   GNTA YLLYA  RI+ IAR  G    +L  
Sbjct: 439  VGLAAVKYADLSTNRITNYQFSFERMLALTGNTAPYLLYAVVRISGIARKGGALDGEL-- 496

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
                  +  E  +E+AL + LL+++ V+  V  DL  + LC YL+++S +F+ FYD    
Sbjct: 497  ---PERLVFEEPQEWALIRQLLQLDAVISEVESDLLPNRLCTYLFELSQSFNRFYDQVPV 553

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ D     + + + RL L    A  +K    +L I ++ +M
Sbjct: 554  LKAD-----EPMRSSRLALCRLAADTLKLGLSLLGIPSLERM 590



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 23/138 (16%)

Query: 22  AVQVAFPEL-GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIA 80
           A+Q AFPE  G+   ++   ++    +FGDFQ N A+AL K  K            + IA
Sbjct: 15  AMQQAFPEADGELNPALGPASKP---EFGDFQANGALALAKPLKQA---------PRQIA 62

Query: 81  SVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLN----- 135
           + +  +L  NP  + + +  + A PGF+N+ L       +++  I +    P L      
Sbjct: 63  AAIVEQLQNNPEFSALAEAPQIAGPGFINITLKPSVLAAEVRQRIGD----PRLGVAAVE 118

Query: 136 -KKLRVLVDFSSPNIARK 152
             +  V+VDFSSPNIA++
Sbjct: 119 QAEAPVIVDFSSPNIAKE 136


>gi|300867420|ref|ZP_07112075.1| Arginyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300334610|emb|CBN57243.1| Arginyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 581

 Score =  295 bits (755), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/327 (48%), Positives = 214/327 (65%), Gaps = 25/327 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+QCN AM+L K        K P  IA +I          N  +A + +   +A PG
Sbjct: 34  KFGDYQCNAAMSLTKKLG-----KPPRAIASAIIE--------NLDVADLCETPTIAGPG 80

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L   Y   ++  I  N   G+ P    +  RV +DFSSPNIAKEMHVGHLRSTII
Sbjct: 81  FINLTLKPEYLEGEVNAIANNPRLGIAPTKTPQ--RVAIDFSSPNIAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKE 417
           GD ++R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P+ LT +    + DL  FY++
Sbjct: 139 GDCLARILEFQGHDVLRLNHVGDWGTQFGMLIAYLREVYPEALTTADALDLGDLVDFYRK 198

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +KKRFDEDE FK+ A Q VV LQ    D ++AW ++C+ SRR+FQ IYD L++ LTERGE
Sbjct: 199 AKKRFDEDETFKETARQEVVRLQAGAEDTRRAWNLLCEQSRREFQVIYDLLDIKLTERGE 258

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           SFY   +  +V  L K GLL  D+G K ++ E     +   +P+ + KSDGGF Y T+DL
Sbjct: 259 SFYNPLLPGVVEDLTKLGLLVEDNGAKCVFIEGFTNKEGEPLPLIVQKSDGGFNYATTDL 318

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
           AA+R RIE++ A+ ++YVTD GQ  HF
Sbjct: 319 AALRYRIEKDGANRLIYVTDSGQANHF 345



 Score =  268 bits (686), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 155/348 (44%), Positives = 206/348 (59%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD ++R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P+ LT +  +   DL  
Sbjct: 135 STIIGDCLARILEFQGHDVLRLNHVGDWGTQFGMLIAYLREVYPEALTTADALDLGDLVD 194

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++KKRFDEDE FK+ A Q VV LQ    D ++AW ++C+ SRR+FQ IYD L++ LT
Sbjct: 195 FYRKAKKRFDEDETFKETARQEVVRLQAGAEDTRRAWNLLCEQSRREFQVIYDLLDIKLT 254

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L K G L              T K G                 
Sbjct: 255 ERGESFYNPLLPGVVEDLTKLGLLVEDNGAKCVFIEGFTNKEGEPLPLIVQKSDGGFNYA 314

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++YVTD GQ  HF    + A+KAG + P+   +  V FG+VL
Sbjct: 315 TTDLAALRYRIEKDGANRLIYVTDSGQANHFAQFFQVARKAGWI-PDDVEIVHVPFGLVL 373

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLDE + RS   L+ + +  +   TE  ++   + +    +
Sbjct: 374 GEDGKKSKTRSGETVRLRDLLDEAIVRSRADLEKRLQEEKREETEEFIANVAKVIGLSAV 433

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  +Y FS+DKMLD +GNTA YLLYAY R+  I R   IN
Sbjct: 434 KYADLSQNRTSNYTFSYDKMLDLKGNTAPYLLYAYVRVKGIGRKGEIN 481



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 95/152 (62%), Gaps = 8/152 (5%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   + +    +KYADLS NR  +Y FS+DKMLD +GNTA YLLYAY R+  I R   I
Sbjct: 421  IANVAKVIGLSAVKYADLSQNRTSNYTFSYDKMLDLKGNTAPYLLYAYVRVKGIGRKGEI 480

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            N ++L   A+   V L+ + E  LAK LL++++V+  V  DL  + +C+YL+++S  F++
Sbjct: 481  NFDNLGADAK---VILKEDAELVLAKHLLQLSEVVGAVEGDLLPNRICQYLFELSQKFNQ 537

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAK 1102
            F++ C  ++ +     + + T RL+L + TAK
Sbjct: 538  FFEQCPVLKSE-----EPLRTSRLVLCDLTAK 564



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 31/137 (22%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQS-IASVVTSELATNPSLAKVIDKIEAAKP 105
           KFGD+QCN AM+L K        K P  IA + I ++  ++L   P++         A P
Sbjct: 34  KFGDYQCNAAMSLTKKL-----GKPPRAIASAIIENLDVADLCETPTI---------AGP 79

Query: 106 GFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK---------- 152
           GF+N+ L   Y   ++  I  N   G+ P    +  RV +DFSSPNIA++          
Sbjct: 80  GFINLTLKPEYLEGEVNAIANNPRLGIAPTKTPQ--RVAIDFSSPNIAKEMHVGHLRSTI 137

Query: 153 -GGFLYPHLPSQIHDIL 168
            G  L   L  Q HD+L
Sbjct: 138 IGDCLARILEFQGHDVL 154


>gi|434395004|ref|YP_007129951.1| arginyl-tRNA synthetase [Gloeocapsa sp. PCC 7428]
 gi|428266845|gb|AFZ32791.1| arginyl-tRNA synthetase [Gloeocapsa sp. PCC 7428]
          Length = 585

 Score =  295 bits (755), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 166/362 (45%), Positives = 234/362 (64%), Gaps = 41/362 (11%)

Query: 215 FTHAVQVAFPELGDKTAS-----VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 269
           FT A+ VAF   G+  A      VA++N K    FGD+Q N A++L +      + K P 
Sbjct: 12  FTQALIVAF---GNDFAEIDPIIVAASNPK----FGDYQSNVALSLSR------QLKQP- 57

Query: 270 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT 329
             A++IA  +  +L     +  + +   +A PGF+N+ L   Y   Q++ I  +    P 
Sbjct: 58  --ARAIAEQIVEKL----DVTDICEPPSIAGPGFINLLLKTEYIEAQLRSIQTD----PR 107

Query: 330 LNKKL-----RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           L   L     RV+VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ GHDV+RLNHVGDWG
Sbjct: 108 LGVALAKTPKRVIVDFSSPNIAKEMHVGHLRSTIIGDCIARVLEFRGHDVLRLNHVGDWG 167

Query: 385 TQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           TQFGMLIA+L++ +PD LT +    + DL  FY+++K+RFDEDE F++ A Q VV LQ  
Sbjct: 168 TQFGMLIAYLREAYPDALTTANALELGDLVTFYRKAKQRFDEDETFRETARQEVVKLQAG 227

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
             D +KAWE++C+ SRR+FQ IY+ L++ L ERGESFY   +  +V  L+++GLL  D G
Sbjct: 228 VEDTQKAWELLCEQSRREFQVIYNLLDIHLIERGESFYNPLLPAVVEDLDRQGLLVEDAG 287

Query: 503 RKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGV 557
            K ++ E     +   +P+ + KSDGG+ Y T+DLAA+R RI++++A+ ++YVTD GQ  
Sbjct: 288 AKCVFLEGFTNKEGEPLPLIVQKSDGGYNYATTDLAALRYRIKQDQAERLIYVTDAGQAN 347

Query: 558 HF 559
           HF
Sbjct: 348 HF 349



 Score =  276 bits (706), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 155/350 (44%), Positives = 211/350 (60%), Gaps = 52/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +PD LT +  +   DL  
Sbjct: 139 STIIGDCIARVLEFRGHDVLRLNHVGDWGTQFGMLIAYLREAYPDALTTANALELGDLVT 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFDEDE F++ A Q VV LQ    D +KAWE++C+ SRR+FQ IY+ L++ L 
Sbjct: 199 FYRKAKQRFDEDETFRETARQEVVKLQAGVEDTQKAWELLCEQSRREFQVIYNLLDIHLI 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L+++G L              T K G                 
Sbjct: 259 ERGESFYNPLLPAVVEDLDRQGLLVEDAGAKCVFLEGFTNKEGEPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++YVTD GQ  HF  + + A++AG + P    +  V FG+VL
Sbjct: 319 TTDLAALRYRIKQDQAERLIYVTDAGQANHFAQVFQVARRAGWI-PENVEIVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ--QAVAYGCI 813
           GED KK KTRSG+T++L +LLDE + RS   L+ + +    T TE  +A+  Q V    +
Sbjct: 378 GEDGKKLKTRSGETIRLRDLLDEAIARSRADLESRLQAEGRTETEEFKAKVAQTVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NR  +Y+FS+DKML  +GNTA Y+LYAY RI  I+R   I+ E
Sbjct: 438 KYADLSQNRTSNYIFSYDKMLALQGNTAPYMLYAYVRIQGISRKGQIDFE 487



 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 112/193 (58%), Gaps = 10/193 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQ--QAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
             + RS   L+ + +    T TE  +A+  Q V    +KYADLS NR  +Y+FS+DKML  
Sbjct: 401  AIARSRADLESRLQAEGRTETEEFKAKVAQTVGISAVKYADLSQNRTSNYIFSYDKMLAL 460

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
            +GNTA Y+LYAY RI  I+R   I+ E L   A    + L    EF LAK LL++++ + 
Sbjct: 461  QGNTAPYMLYAYVRIQGISRKGQIDFEQLGSEAN---IFLHEPTEFTLAKHLLQLSETIS 517

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             V +DL  + LC+YL+++S  F++FYD C  ++ +     + + T RLL+ + TA+ ++ 
Sbjct: 518  DVEQDLMPNRLCQYLFELSQKFNQFYDQCPVLQAE-----EPIRTSRLLMCDLTARSLRL 572

Query: 1107 CFDILNIRTVHKM 1119
               +L I  + +M
Sbjct: 573  GLSLLGISVIERM 585



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 34/144 (23%)

Query: 19  FTHAVQVAFPELGDKTAS-----VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 73
           FT A+ VAF   G+  A      VA++N K    FGD+Q N A++L +      + K P 
Sbjct: 12  FTQALIVAF---GNDFAEIDPIIVAASNPK----FGDYQSNVALSLSR------QLKQP- 57

Query: 74  DIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPT 133
             A++IA  +  +L     +  + +    A PGF+N+ L   Y   Q++ I  +    P 
Sbjct: 58  --ARAIAEQIVEKL----DVTDICEPPSIAGPGFINLLLKTEYIEAQLRSIQTD----PR 107

Query: 134 LNKKL-----RVLVDFSSPNIARK 152
           L   L     RV+VDFSSPNIA++
Sbjct: 108 LGVALAKTPKRVIVDFSSPNIAKE 131


>gi|307150379|ref|YP_003885763.1| arginyl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306980607|gb|ADN12488.1| arginyl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 585

 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/371 (44%), Positives = 236/371 (63%), Gaps = 39/371 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTAS--VASTNEKYVHKFGDFQCNDAMALCKIFKDK 262
           +S+ + L   FT A+++AF +   +     V +TN K    FGD+Q N A++L K  K  
Sbjct: 2   ISIIEQLKQRFTQALKIAFEQDFTEIEGLVVPATNPK----FGDYQSNVALSLAKPLK-- 55

Query: 263 GEKKNPFDIA-QSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI---- 317
              ++P  IA Q + ++  S+L   P         ++A PGF+N  L R Y   QI    
Sbjct: 56  ---QSPRAIAEQLVKALEISDLCEPP---------QIAGPGFINFTLKRSYLENQISILQ 103

Query: 318 KD--IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
           KD  + V    PP      ++++DFSSPNIAKEMHVGHLRSTI+GD ++R+LE+ GH+V+
Sbjct: 104 KDPRLGVEKAAPPQ-----KIVIDFSSPNIAKEMHVGHLRSTILGDCLARILEFRGHEVL 158

Query: 376 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAY 433
           RLNHVGDWGTQFGMLIA+L++ +PD LT +    + DL +FYK++K RFDEDE FK+ A 
Sbjct: 159 RLNHVGDWGTQFGMLIAYLREVYPDALTTANALDLGDLVSFYKKAKIRFDEDETFKEEAR 218

Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 493
           Q VV LQ    D   AW+++C+ SRR+FQ IYD L++ L ERGESFY   +  ++  L++
Sbjct: 219 QEVVKLQAGANDSGHAWQLLCEQSRREFQGIYDILDIKLVERGESFYNPMLSGILTQLDE 278

Query: 494 KGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIV 548
           +GLL  D G K ++ E     +   +P+ + KSDGG+ Y T+DLAA++ R+E+++A  I+
Sbjct: 279 QGLLTEDQGAKCVFLEGFTNKEGEPLPLIVQKSDGGYNYATTDLAALKYRVEQDQATRII 338

Query: 549 YVTDLGQGVHF 559
           YVTD GQ  HF
Sbjct: 339 YVTDAGQANHF 349



 Score =  276 bits (705), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 155/349 (44%), Positives = 208/349 (59%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STI+GD ++R+LE+ GH+V+RLNHVGDWGTQFGMLIA+L++ +PD LT +  +   DL +
Sbjct: 139 STILGDCLARILEFRGHEVLRLNHVGDWGTQFGMLIAYLREVYPDALTTANALDLGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K RFDEDE FK+ A Q VV LQ    D   AW+++C+ SRR+FQ IYD L++ L 
Sbjct: 199 FYKKAKIRFDEDETFKEEARQEVVKLQAGANDSGHAWQLLCEQSRREFQGIYDILDIKLV 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG----------------- 713
           ERGESFY   +  ++  L+++G L+             T K G                 
Sbjct: 259 ERGESFYNPMLSGILTQLDEQGLLTEDQGAKCVFLEGFTNKEGEPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + AKKAGIL P    +  V FG+V 
Sbjct: 319 TTDLAALKYRVEQDQATRIIYVTDAGQANHFAQVFQVAKKAGIL-PENVEVVHVAFGIVK 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGL---RRSLDKLKDKNRHTELTPTELSEAQQAVAYGC 812
           GED KK KTRSG+T+KL +L+DE +   RR L+     +  TE +   ++   Q V    
Sbjct: 378 GEDGKKLKTRSGETIKLKDLIDEAIAHARRDLETRLSSDERTE-SQEFINHVAQGVGISA 436

Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           IKYADLS NR  DY+FS+DKML  +GNTA Y+LYAY R+ SI+R   I+
Sbjct: 437 IKYADLSQNRVSDYIFSYDKMLALQGNTAPYMLYAYARVQSISREGNID 485



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 108/187 (57%), Gaps = 15/187 (8%)

Query: 940  KNRHTELTPTELSEAQ-------QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAV 992
            ++  T L+  E +E+Q       Q V    IKYADLS NR  DY+FS+DKML  +GNTA 
Sbjct: 407  RDLETRLSSDERTESQEFINHVAQGVGISAIKYADLSQNRVSDYIFSYDKMLALQGNTAP 466

Query: 993  YLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDL 1052
            Y+LYAY R+ SI+R   I+   L   A    V L  E E  L+K LL++ +V+  V RDL
Sbjct: 467  YMLYAYARVQSISREGNIDFNQLDEGAS---VLLTEEAELVLSKCLLQLTEVIQDVERDL 523

Query: 1053 CLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILN 1112
              + LCEYLY++S  F++FY+ C  ++ +       + T RL+L + TAK +K    +L 
Sbjct: 524  LPNRLCEYLYELSKKFNKFYETCPVLKSE-----DPIKTSRLILCDLTAKTLKLGLFLLG 578

Query: 1113 IRTVHKM 1119
            I  + +M
Sbjct: 579  ISVLERM 585



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 32/153 (20%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTAS--VASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           +S+ + L   FT A+++AF +   +     V +TN K    FGD+Q N A++L K  K  
Sbjct: 2   ISIIEQLKQRFTQALKIAFEQDFTEIEGLVVPATNPK----FGDYQSNVALSLAKPLK-- 55

Query: 67  GEKKNPFDIA-QSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM---- 121
              ++P  IA Q + ++  S+L   P +A          PGF+N  L R Y   Q+    
Sbjct: 56  ---QSPRAIAEQLVKALEISDLCEPPQIAG---------PGFINFTLKRSYLENQISILQ 103

Query: 122 KD--IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           KD  + V    PP      ++++DFSSPNIA++
Sbjct: 104 KDPRLGVEKAAPPQ-----KIVIDFSSPNIAKE 131


>gi|428181222|gb|EKX50087.1| Arginyl-tRNA synthetase [Guillardia theta CCMP2712]
          Length = 695

 Score =  294 bits (753), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 168/367 (45%), Positives = 230/367 (62%), Gaps = 32/367 (8%)

Query: 207 VRDYLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           V+ +L    T A+  AF  E+ D    VA  ++    +FGD+QCN AM+L K    K   
Sbjct: 112 VQQWLERKVTQALCEAFGEEVKDVNPMVAIASKP---EFGDYQCNVAMSLSKKVGMK--- 165

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
             P D+A  +   +      +P L  V ++ E+A PGF+N+ L + Y G +I  +  +G 
Sbjct: 166 --PRDVADKLLQRL------HPLLQDVFEQPEIAGPGFLNLRLRKDYIGGRISRMTEDGE 217

Query: 326 Q---PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           +   P T N K RV+VDFSSPNIAKEMHVGHLRSTIIGDT+ RL E+LGHDV+RLNHVGD
Sbjct: 218 RLGIPKTGNPK-RVIVDFSSPNIAKEMHVGHLRSTIIGDTLCRLEEFLGHDVLRLNHVGD 276

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQA-----FYKESKKRFDEDEIFKKRAYQCVV 437
           WGTQFGMLI +L++K     T    + DLQ      FYK++K RFDEDE F+  + + VV
Sbjct: 277 WGTQFGMLITYLREK---GFTAEKGLGDLQIGDLVNFYKQAKARFDEDEAFQTASRKEVV 333

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
           ALQ  D      W ++C+ SR++FQ +YD LNV L ERGESFY   +  ++  L++  LL
Sbjct: 334 ALQAGDATSLSGWSILCEASRKEFQVVYDMLNVRLEERGESFYNNMLSDVISGLKEIELL 393

Query: 498 ELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
           +  +G ++++      +D   +P  + KSDGG+ Y T+DLAAIR R+++EKAD I+YVTD
Sbjct: 394 KESEGARVVYVDGYKNKDGDPMPFLVQKSDGGYLYSTTDLAAIRHRVQKEKADRILYVTD 453

Query: 553 LGQGVHF 559
            GQ  HF
Sbjct: 454 AGQSTHF 460



 Score =  250 bits (638), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 151/348 (43%), Positives = 195/348 (56%), Gaps = 57/348 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA-- 622
           STIIGDT+ RL E+LGHDV+RLNHVGDWGTQFGMLI +L++K     T    + DLQ   
Sbjct: 250 STIIGDTLCRLEEFLGHDVLRLNHVGDWGTQFGMLITYLREK---GFTAEKGLGDLQIGD 306

Query: 623 ---FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV 679
              FYK++K RFDEDE F+  + + VVALQ  D      W ++C+ SR++FQ +YD LNV
Sbjct: 307 LVNFYKQAKARFDEDEAFQTASRKEVVALQAGDATSLSGWSILCEASRKEFQVVYDMLNV 366

Query: 680 TLTERGESFYQKHMEQLV-------------------------------PYLEKK---GN 705
            L ERGESFY   +  ++                               P+L +K   G 
Sbjct: 367 RLEERGESFYNNMLSDVISGLKEIELLKESEGARVVYVDGYKNKDGDPMPFLVQKSDGGY 426

Query: 706 LSLTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFG 752
           L  T  L              I+YVTD GQ  HF      A++AG + P+   ++ V FG
Sbjct: 427 LYSTTDLAAIRHRVQKEKADRILYVTDAGQSTHFDQARCIARQAGWV-PSHVSLEHVPFG 485

Query: 753 VVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSE-AQQAVAYG 811
           +V GED KKFKTRSGDTVKL +LLDE + R+   L+++        TE +E   + V   
Sbjct: 486 LVQGEDGKKFKTRSGDTVKLRDLLDEAIVRASKDLRERLEADNKPFTEETERTARIVGLA 545

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
            +KYADLS NR  +Y FS+DKML   GNTA Y+LYA+ RI  I R  G
Sbjct: 546 AVKYADLSMNRESNYRFSYDKMLALSGNTAPYMLYAFARINGIRRKIG 593



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 8/170 (4%)

Query: 950  ELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 1009
            E     + V    +KYADLS NR  +Y FS+DKML   GNTA Y+LYA+ RI  I R  G
Sbjct: 534  ETERTARIVGLAAVKYADLSMNRESNYRFSYDKMLALSGNTAPYMLYAFARINGIRRKIG 593

Query: 1010 INSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFS 1069
                ++++ + S  + L+H  E  LA+ L+ + ++L+ V + L  H LCEY++++S  F+
Sbjct: 594  ---SEIKLDS-SCKIILDHPAEMFLARHLVYLPELLLDVEKSLYPHRLCEYIFELSQRFN 649

Query: 1070 EFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            +FY+NC      +E + K+    RL L  ATA  ++   ++L I TV ++
Sbjct: 650  QFYENCPVANAPSEEEKKS----RLALCSATANTLQLVLNLLGIDTVERL 695



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 19/146 (13%)

Query: 11  VRDYLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           V+ +L    T A+  AF  E+ D    VA  ++    +FGD+QCN AM+L K    K   
Sbjct: 112 VQQWLERKVTQALCEAFGEEVKDVNPMVAIASKP---EFGDYQCNVAMSLSKKVGMK--- 165

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
             P D+A  +   +      +P L  V ++ E A PGF+N+ L + Y G ++  +  +G 
Sbjct: 166 --PRDVADKLLQRL------HPLLQDVFEQPEIAGPGFLNLRLRKDYIGGRISRMTEDGE 217

Query: 130 Q---PPTLNKKLRVLVDFSSPNIARK 152
           +   P T N K RV+VDFSSPNIA++
Sbjct: 218 RLGIPKTGNPK-RVIVDFSSPNIAKE 242


>gi|428181223|gb|EKX50088.1| hypothetical protein GUITHDRAFT_200394 [Guillardia theta CCMP2712]
          Length = 649

 Score =  294 bits (752), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 168/367 (45%), Positives = 230/367 (62%), Gaps = 32/367 (8%)

Query: 207 VRDYLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           V+ +L    T A+  AF  E+ D    VA  ++    +FGD+QCN AM+L K    K   
Sbjct: 70  VQQWLERKVTQALCEAFGEEVKDVNPMVAIASKP---EFGDYQCNVAMSLSKKVGMK--- 123

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
             P D+A  +   +      +P L  V ++ E+A PGF+N+ L + Y G +I  +  +G 
Sbjct: 124 --PRDVADKLLQRL------HPLLQDVFEQPEIAGPGFLNLRLRKDYIGGRISRMTEDGE 175

Query: 326 Q---PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           +   P T N K RV+VDFSSPNIAKEMHVGHLRSTIIGDT+ RL E+LGHDV+RLNHVGD
Sbjct: 176 RLGIPKTGNPK-RVIVDFSSPNIAKEMHVGHLRSTIIGDTLCRLEEFLGHDVLRLNHVGD 234

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQA-----FYKESKKRFDEDEIFKKRAYQCVV 437
           WGTQFGMLI +L++K     T    + DLQ      FYK++K RFDEDE F+  + + VV
Sbjct: 235 WGTQFGMLITYLREK---GFTAEKGLGDLQIGDLVNFYKQAKARFDEDEAFQTASRKEVV 291

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
           ALQ  D      W ++C+ SR++FQ +YD LNV L ERGESFY   +  ++  L++  LL
Sbjct: 292 ALQAGDATSLSGWSILCEASRKEFQVVYDMLNVRLEERGESFYNNMLSDVISGLKEIELL 351

Query: 498 ELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
           +  +G ++++      +D   +P  + KSDGG+ Y T+DLAAIR R+++EKAD I+YVTD
Sbjct: 352 KESEGARVVYVDGYKNKDGDPMPFLVQKSDGGYLYSTTDLAAIRHRVQKEKADRILYVTD 411

Query: 553 LGQGVHF 559
            GQ  HF
Sbjct: 412 AGQSTHF 418



 Score =  250 bits (639), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 152/351 (43%), Positives = 196/351 (55%), Gaps = 67/351 (19%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA-- 622
           STIIGDT+ RL E+LGHDV+RLNHVGDWGTQFGMLI +L++K     T    + DLQ   
Sbjct: 208 STIIGDTLCRLEEFLGHDVLRLNHVGDWGTQFGMLITYLREK---GFTAEKGLGDLQIGD 264

Query: 623 ---FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV 679
              FYK++K RFDEDE F+  + + VVALQ  D      W ++C+ SR++FQ +YD LNV
Sbjct: 265 LVNFYKQAKARFDEDEAFQTASRKEVVALQAGDATSLSGWSILCEASRKEFQVVYDMLNV 324

Query: 680 TLTERGESFYQKHMEQLV-------------------------------PYLEKK---GN 705
            L ERGESFY   +  ++                               P+L +K   G 
Sbjct: 325 RLEERGESFYNNMLSDVISGLKEIELLKESEGARVVYVDGYKNKDGDPMPFLVQKSDGGY 384

Query: 706 LSLTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFG 752
           L  T  L              I+YVTD GQ  HF      A++AG + P+   ++ V FG
Sbjct: 385 LYSTTDLAAIRHRVQKEKADRILYVTDAGQSTHFDQARCIARQAGWV-PSHVSLEHVPFG 443

Query: 753 VVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK----NRHTELTPTELSEAQQAV 808
           +V GED KKFKTRSGDTVKL +LLDE + R+   L+++    N+ TE T        + V
Sbjct: 444 LVQGEDGKKFKTRSGDTVKLRDLLDEAIVRASKDLRERLEADNKETERTA-------RIV 496

Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
               +KYADLS NR  +Y FS+DKML   GNTA Y+LYA+ RI  I R  G
Sbjct: 497 GLAAVKYADLSMNRESNYRFSYDKMLALSGNTAPYMLYAFARINGIRRKIG 547



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 935  DKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYL 994
            ++L+  N+ TE T        + V    +KYADLS NR  +Y FS+DKML   GNTA Y+
Sbjct: 480  ERLEADNKETERTA-------RIVGLAAVKYADLSMNRESNYRFSYDKMLALSGNTAPYM 532

Query: 995  LYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCL 1054
            LYA+ RI  I R  G    ++++ + S  + L+H  E  LA+ L+ + ++L+ V + L  
Sbjct: 533  LYAFARINGIRRKIG---SEIKLDS-SCKIILDHPAEMFLARHLVYLPELLLDVEKSLYP 588

Query: 1055 HHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIR 1114
            H LCEY++++S  F++FY+NC      +E + K+    RL L  ATA  ++   ++L I 
Sbjct: 589  HRLCEYIFELSQRFNQFYENCPVANAPSEEEKKS----RLALCSATANTLQLVLNLLGID 644

Query: 1115 TVHKM 1119
            TV ++
Sbjct: 645  TVERL 649



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 19/146 (13%)

Query: 11  VRDYLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           V+ +L    T A+  AF  E+ D    VA  ++    +FGD+QCN AM+L K    K   
Sbjct: 70  VQQWLERKVTQALCEAFGEEVKDVNPMVAIASKP---EFGDYQCNVAMSLSKKVGMK--- 123

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
             P D+A  +   +      +P L  V ++ E A PGF+N+ L + Y G ++  +  +G 
Sbjct: 124 --PRDVADKLLQRL------HPLLQDVFEQPEIAGPGFLNLRLRKDYIGGRISRMTEDGE 175

Query: 130 Q---PPTLNKKLRVLVDFSSPNIARK 152
           +   P T N K RV+VDFSSPNIA++
Sbjct: 176 RLGIPKTGNPK-RVIVDFSSPNIAKE 200


>gi|16332034|ref|NP_442762.1| arginyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|383323777|ref|YP_005384631.1| arginyl-tRNA-synthetase [Synechocystis sp. PCC 6803 substr. GT-I]
 gi|383326946|ref|YP_005387800.1| arginyl-tRNA-synthetase [Synechocystis sp. PCC 6803 substr. PCC-P]
 gi|383492830|ref|YP_005410507.1| arginyl-tRNA-synthetase [Synechocystis sp. PCC 6803 substr. PCC-N]
 gi|384438098|ref|YP_005652823.1| arginyl-tRNA-synthetase [Synechocystis sp. PCC 6803]
 gi|451816186|ref|YP_007452638.1| arginyl-tRNA-synthetase [Synechocystis sp. PCC 6803]
 gi|2501048|sp|Q55486.1|SYR_SYNY3 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|1001346|dbj|BAA10833.1| arginyl-tRNA-synthetase [Synechocystis sp. PCC 6803]
 gi|339275131|dbj|BAK51618.1| arginyl-tRNA-synthetase [Synechocystis sp. PCC 6803]
 gi|359273097|dbj|BAL30616.1| arginyl-tRNA-synthetase [Synechocystis sp. PCC 6803 substr. GT-I]
 gi|359276267|dbj|BAL33785.1| arginyl-tRNA-synthetase [Synechocystis sp. PCC 6803 substr. PCC-N]
 gi|359279437|dbj|BAL36954.1| arginyl-tRNA-synthetase [Synechocystis sp. PCC 6803 substr. PCC-P]
 gi|407960329|dbj|BAM53569.1| arginyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|451782155|gb|AGF53124.1| arginyl-tRNA-synthetase [Synechocystis sp. PCC 6803]
          Length = 584

 Score =  294 bits (752), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/378 (43%), Positives = 237/378 (62%), Gaps = 27/378 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           +S+   L+D F  A++  FP   D T            KFGDFQCN A+ L K       
Sbjct: 2   VSILTQLNDHFAQALEGQFPS--DVTLPTPLVVPASNPKFGDFQCNIALPLAKQLG---- 55

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            + P  IA  I   V        +L+++ + + +A PGF+N+ L   Y GEQ+  +  N 
Sbjct: 56  -QPPRAIAMEIVDKV--------NLSEICEPLTIAGPGFINIKLLPDYLGEQLIKLQQNQ 106

Query: 325 VQPPTLNK-KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
               +L K + R++VDFSSPNIAKEMHVGHLRSTIIGD ++R+LE+ G+DV+RLNHVGDW
Sbjct: 107 QLGVSLVKGEERIVVDFSSPNIAKEMHVGHLRSTIIGDCLARVLEFRGYDVLRLNHVGDW 166

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           GTQFGMLI +L++ +P+ L  +    I DL  FYK++K+RFD+DE F++ + Q VVALQ 
Sbjct: 167 GTQFGMLITYLKEVYPEALVTADALDIGDLVTFYKQAKQRFDQDEQFRETSRQAVVALQA 226

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            D    KAW+++C+ SRR+FQ IYD L++T+ ERGESFY   +  +V  L++K LL  D+
Sbjct: 227 GDAKSIKAWQLLCEQSRREFQLIYDCLDITIEERGESFYNPFLPGVVELLQEKDLLVEDN 286

Query: 502 GRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G + ++      +D   +P+ + KSDGG+ Y T+DLAA+  R+  + A+ I+YVTD GQ 
Sbjct: 287 GAQCVFLDGFTNKDGDRLPLIVQKSDGGYNYATTDLAALNYRLNTDGAEKIIYVTDAGQA 346

Query: 557 VH----FRLLEESTIIGD 570
            H    F++ E++ I+ D
Sbjct: 347 NHFAQFFQVAEKAGILTD 364



 Score =  277 bits (708), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 157/348 (45%), Positives = 210/348 (60%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD ++R+LE+ G+DV+RLNHVGDWGTQFGMLI +L++ +P+ L  +    I DL  
Sbjct: 139 STIIGDCLARVLEFRGYDVLRLNHVGDWGTQFGMLITYLKEVYPEALVTADALDIGDLVT 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K+RFD+DE F++ + Q VVALQ  D    KAW+++C+ SRR+FQ IYD L++T+ 
Sbjct: 199 FYKQAKQRFDQDEQFRETSRQAVVALQAGDAKSIKAWQLLCEQSRREFQLIYDCLDITIE 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L++K  L              T K G                 
Sbjct: 259 ERGESFYNPFLPGVVELLQEKDLLVEDNGAQCVFLDGFTNKDGDRLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF    + A+KAGIL  + T++  V FG+V 
Sbjct: 319 TTDLAALNYRLNTDGAEKIIYVTDAGQANHFAQFFQVAEKAGILT-DPTQVVHVPFGLVK 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTR+GDT++L +LL E + R+   L+ +    E + TE   +E  Q V  G +
Sbjct: 378 GEDGKKLKTRAGDTIRLKDLLTEAVTRARQDLETRLTAEERSETEEFKTEVAQRVGIGAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  DYVFSFDKML  +GNTA Y+LYAY RI SI+R  GI+
Sbjct: 438 KYADLSQNRTSDYVFSFDKMLALQGNTAPYMLYAYARIQSISREGGID 485



 Score =  129 bits (325), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 103/187 (55%), Gaps = 16/187 (8%)

Query: 940  KNRHTELTPTELSEAQ-------QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAV 992
            ++  T LT  E SE +       Q V  G +KYADLS NR  DYVFSFDKML  +GNTA 
Sbjct: 407  QDLETRLTAEERSETEEFKTEVAQRVGIGAVKYADLSQNRTSDYVFSFDKMLALQGNTAP 466

Query: 993  YLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDL 1052
            Y+LYAY RI SI+R  GI+   +     S  + L    E  LAK LL+  DV+  V   L
Sbjct: 467  YMLYAYARIQSISREGGIDFAQM----DSGEIVLTEPTELVLAKNLLQFADVIETVEISL 522

Query: 1053 CLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILN 1112
              + LC+YLY++S  F+ FY+NC  ++     +       RLLL + TA+ +K    +L 
Sbjct: 523  LPNRLCDYLYELSKVFNRFYENCPVLKASDPQR-----GSRLLLCDLTARTLKLGLSLLG 577

Query: 1113 IRTVHKM 1119
            I  + +M
Sbjct: 578  IPVLDRM 584



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 16/145 (11%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           +S+   L+D F  A++  FP   D T            KFGDFQCN A+ L K       
Sbjct: 2   VSILTQLNDHFAQALEGQFPS--DVTLPTPLVVPASNPKFGDFQCNIALPLAKQLG---- 55

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            + P  IA  I   V        +L+++ + +  A PGF+N+ L   Y GEQ+  +  N 
Sbjct: 56  -QPPRAIAMEIVDKV--------NLSEICEPLTIAGPGFINIKLLPDYLGEQLIKLQQNQ 106

Query: 129 VQPPTLNK-KLRVLVDFSSPNIARK 152
               +L K + R++VDFSSPNIA++
Sbjct: 107 QLGVSLVKGEERIVVDFSSPNIAKE 131


>gi|222617773|gb|EEE53905.1| hypothetical protein OsJ_00455 [Oryza sativa Japonica Group]
          Length = 588

 Score =  293 bits (751), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 169/429 (39%), Positives = 252/429 (58%), Gaps = 37/429 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL-CKIFKDKGE 264
           SV   L  + T +++   P+L      V    E     FGD+QCN+AM++  +I      
Sbjct: 12  SVEQQLCTLITSSLRATVPDL-----DVEPMLEVSKPGFGDYQCNNAMSVFSRIRGSATN 66

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            +NP  + Q+IA+        N   + +I+ I VA PG++N+ LS  +  ++I+D++V G
Sbjct: 67  FRNPMAVGQAIAN--------NLPQSNIIESISVAGPGYINITLSSNWIAQRIQDMLVCG 118

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           ++   P L  K R ++DFSSPNIAKEMHVGH+RSTIIGDT++ + E+   +V+R NHVGD
Sbjct: 119 IKTWAPILPVK-RAVLDFSSPNIAKEMHVGHIRSTIIGDTLAHMFEFTNVEVLRRNHVGD 177

Query: 383 WGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           WGTQFGMLI  L ++FPD+    +  + DLQ+FYK SKKRFD+D  FK+RA Q       
Sbjct: 178 WGTQFGMLIEFLFEQFPDWEDVGNQAVGDLQSFYKASKKRFDDDPDFKERARQA-----G 232

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
            +  Y+ AW+ IC +SR +F  +Y RLNV L E+GESFY  ++  ++  L  KGL+    
Sbjct: 233 GEDKYRAAWKKICQISRMEFDLVYKRLNVKLEEKGESFYNPYIPPVLEELTNKGLIVESK 292

Query: 502 GRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           G ++++ ED    P+ ++K DGGF Y ++DLAA+  R+  EKA+WI+YVTD+GQ  HF +
Sbjct: 293 GARVIFVEDH---PLIVIKQDGGFNYASTDLAALWYRLNVEKAEWIIYVTDVGQQRHFHM 349

Query: 562 LEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 621
           L  +  +      L E  G    + +HVG     FG+++     +F    T+   +  L 
Sbjct: 350 LFTAAKMA---GWLPEQNGKKYPKASHVG-----FGLVLGSDGKRFR---TRCSEVVRLV 398

Query: 622 AFYKESKKR 630
               E+K R
Sbjct: 399 DLLDEAKAR 407



 Score =  251 bits (640), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/347 (41%), Positives = 195/347 (56%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++ + E+   +V+R NHVGDWGTQFGMLI  L ++FPD+    +  + DLQ+F
Sbjct: 151 STIIGDTLAHMFEFTNVEVLRRNHVGDWGTQFGMLIEFLFEQFPDWEDVGNQAVGDLQSF 210

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SKKRFD+D  FK+RA Q        +  Y+ AW+ IC +SR +F  +Y RLNV L E
Sbjct: 211 YKASKKRFDDDPDFKERARQA-----GGEDKYRAAWKKICQISRMEFDLVYKRLNVKLEE 265

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++  ++  L  KG                                       
Sbjct: 266 KGESFYNPYIPPVLEELTNKGLIVESKGARVIFVEDHPLIVIKQDGGFNYASTDLAALWY 325

Query: 705 NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL---NPNK-TRMDFVGFGVVLGEDRK 760
            L++ K   I+YVTD+GQ  HF +L   AK AG L   N  K  +   VGFG+VLG D K
Sbjct: 326 RLNVEKAEWIIYVTDVGQQRHFHMLFTAAKMAGWLPEQNGKKYPKASHVGFGLVLGSDGK 385

Query: 761 KFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYA 816
           +F+TR  + V+L +LLDE   RS    + +     +  + T  EL    +A+ YG +KY+
Sbjct: 386 RFRTRCSEVVRLVDLLDEAKARSKAQLIKRFTGNGQIADWTDDELDRTSEAIGYGAVKYS 445

Query: 817 DLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           DL +NR  DY FSFD+ML D+GNTAVYL YA+ RI SI R A  + E
Sbjct: 446 DLKNNRLTDYTFSFDQMLSDKGNTAVYLQYAHARICSIIRKASKDVE 492



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/176 (43%), Positives = 103/176 (58%), Gaps = 10/176 (5%)

Query: 944  TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIAS 1003
             + T  EL    +A+ YG +KY+DL +NR  DY FSFD+ML D+GNTAVYL YA+ RI S
Sbjct: 423  ADWTDDELDRTSEAIGYGAVKYSDLKNNRLTDYTFSFDQMLSDKGNTAVYLQYAHARICS 482

Query: 1004 IARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYD 1063
            I R A  + E L++      ++L H  E  L   L++  +V+     DL  H LC+YLY 
Sbjct: 483  IIRKASKDVEKLKMTG---AITLGHPYERFLGLHLIQFTEVVEQACADLQPHRLCDYLYS 539

Query: 1064 ISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            +S  FS+FY NC  +    E       T RLLL EAT  +M++CF +L I  VHK+
Sbjct: 540  LSLTFSKFYTNCQVVGSPEE-------TSRLLLCEATGIIMRQCFHLLGITPVHKL 588



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 17/146 (11%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL-CKIFKDKGE 68
           SV   L  + T +++   P+L      V    E     FGD+QCN+AM++  +I      
Sbjct: 12  SVEQQLCTLITSSLRATVPDL-----DVEPMLEVSKPGFGDYQCNNAMSVFSRIRGSATN 66

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            +NP  + Q+IA+        N   + +I+ I  A PG++N+ LS  +  ++++D++V G
Sbjct: 67  FRNPMAVGQAIAN--------NLPQSNIIESISVAGPGYINITLSSNWIAQRIQDMLVCG 118

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           ++   P L  K R ++DFSSPNIA++
Sbjct: 119 IKTWAPILPVK-RAVLDFSSPNIAKE 143


>gi|351724403|ref|NP_001236544.1| arginyl-tRNA synthetase [Glycine max]
 gi|207366683|emb|CAR64264.1| arginyl-tRNA synthetase [Glycine max]
          Length = 597

 Score =  293 bits (750), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 159/365 (43%), Positives = 231/365 (63%), Gaps = 20/365 (5%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASV--ASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           SV+  L+  F  ++++  P+  D   S+   + N+  + KF D+QCN+AM L   F    
Sbjct: 11  SVKKQLAKEFEESLRITVPDEPDVVPSIDPCAANKAGI-KFADYQCNNAMGL---FAKMK 66

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
            K+  F   Q++   + + L      +++I+   VA PGFVN+ LS+ +  ++++ ++++
Sbjct: 67  GKQTGFRGPQAVGQAILNHLPQ----SEMIESCSVAGPGFVNIVLSKKWIAQRLERLLID 122

Query: 324 GVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLG-HDVVRLNHV 380
           G+    P L  K  VLVDFSSPNIAKEMHVGHLRSTIIGDT++R+ E+     ++R NH+
Sbjct: 123 GIDKWAPRLPVKT-VLVDFSSPNIAKEMHVGHLRSTIIGDTLARMFEFSRVETLIRRNHL 181

Query: 381 GDWGTQFGMLIAHLQDKFP---DYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           GDWGTQFGMLIAHL D +P   D+      I DLQAFYK SK RFD D  FK RA Q VV
Sbjct: 182 GDWGTQFGMLIAHLFDTYPNPEDF--NEAAIGDLQAFYKASKVRFDNDPEFKLRAQQSVV 239

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
            LQ  +  Y +AW+ ICD+S+ +F+K+Y RL V L  RGES+Y   + Q +  L+  GL+
Sbjct: 240 RLQSGEEKYHRAWQQICDISQAEFEKVYQRLGVRLEARGESYYNDLIPQTLERLDNLGLI 299

Query: 498 ELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGV 557
           E DDG ++++ E   +IP+  VK DGG+ Y ++DLAA+  R+  E  +W +YVTD+GQ  
Sbjct: 300 EEDDGARVIFVEGV-NIPIIAVKRDGGYNYSSTDLAALWNRLNVENVEWNIYVTDVGQWQ 358

Query: 558 HFRLL 562
           HF ++
Sbjct: 359 HFDMV 363



 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 149/349 (42%), Positives = 205/349 (58%), Gaps = 52/349 (14%)

Query: 565 STIIGDTISRLLEYLG-HDVVRLNHVGDWGTQFGMLIAHLQDKFP---DYLTKSPPIADL 620
           STIIGDT++R+ E+     ++R NH+GDWGTQFGMLIAHL D +P   D+      I DL
Sbjct: 156 STIIGDTLARMFEFSRVETLIRRNHLGDWGTQFGMLIAHLFDTYPNPEDF--NEAAIGDL 213

Query: 621 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT 680
           QAFYK SK RFD D  FK RA Q VV LQ  +  Y +AW+ ICD+S+ +F+K+Y RL V 
Sbjct: 214 QAFYKASKVRFDNDPEFKLRAQQSVVRLQSGEEKYHRAWQQICDISQAEFEKVYQRLGVR 273

Query: 681 LTERGESFYQKHMEQLVPYLEKKGNL---------------------------------- 706
           L  RGES+Y   + Q +  L+  G +                                  
Sbjct: 274 LEARGESYYNDLIPQTLERLDNLGLIEEDDGARVIFVEGVNIPIIAVKRDGGYNYSSTDL 333

Query: 707 -SLTKKLGI------VYVTDLGQGVHFRLLEECAKKAGILNPNK----TRMDFVGFGVVL 755
            +L  +L +      +YVTD+GQ  HF ++ +  ++AG L PN      +   +GFG+VL
Sbjct: 334 AALWNRLNVENVEWNIYVTDVGQWQHFDMVFKAFRRAGWL-PNHENEFPKCTHIGFGLVL 392

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           GED K+F+TRS +TV+L ELLDE  RR    L +++   + +  E+ +  +AV YG +KY
Sbjct: 393 GEDGKRFRTRSSETVRLVELLDEAKRRCKASLLERDAVKDWSEEEIEKTAEAVGYGAVKY 452

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           ADL  NR  +Y FSFD+ML+D+GNTAVYL YA+ RI SI R +G + E+
Sbjct: 453 ADLRINRLTNYTFSFDQMLNDKGNTAVYLQYAHARICSIMRKSGKDMEE 501



 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 11/190 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            RR    L +++   + +  E+ +  +AV YG +KYADL  NR  +Y FSFD+ML+D+GNT
Sbjct: 418  RRCKASLLERDAVKDWSEEEIEKTAEAVGYGAVKYADLRINRLTNYTFSFDQMLNDKGNT 477

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            AVYL YA+ RI SI R +G + E+++   ++  +   HE E AL   L++  +V      
Sbjct: 478  AVYLQYAHARICSIMRKSGKDMEEIK---KNGNIVSNHEDERALGLHLIQFPEVFEESLT 534

Query: 1051 DLCLHHLCEYLYDISTAFS-EFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
            +L  + LCEYLY+++  F+ +FY NC  +    E       T RLLL EAT  VM++CF 
Sbjct: 535  NLLPNVLCEYLYNLTEIFTKKFYTNCQVVGSPEE-------TSRLLLCEATVTVMRQCFY 587

Query: 1110 ILNIRTVHKM 1119
            +L I  V+++
Sbjct: 588  LLGIEPVYRL 597



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 13/147 (8%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASV--ASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           SV+  L+  F  ++++  P+  D   S+   + N+  + KF D+QCN+AM L   F    
Sbjct: 11  SVKKQLAKEFEESLRITVPDEPDVVPSIDPCAANKAGI-KFADYQCNNAMGL---FAKMK 66

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
            K+  F   Q++   + + L      +++I+    A PGFVN+ LS+ +  ++++ ++++
Sbjct: 67  GKQTGFRGPQAVGQAILNHLPQ----SEMIESCSVAGPGFVNIVLSKKWIAQRLERLLID 122

Query: 128 GVQ--PPTLNKKLRVLVDFSSPNIARK 152
           G+    P L  K  VLVDFSSPNIA++
Sbjct: 123 GIDKWAPRLPVKT-VLVDFSSPNIAKE 148


>gi|54290192|dbj|BAD61080.1| putative arginyl-tRNA synthetase [Oryza sativa Japonica Group]
          Length = 631

 Score =  293 bits (750), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 161/391 (41%), Positives = 239/391 (61%), Gaps = 32/391 (8%)

Query: 244 FGDFQCNDAMAL-CKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           FGD+QCN+AM++  +I       +NP  + Q+IA+        N   + +I+ I VA PG
Sbjct: 9   FGDYQCNNAMSVFSRIRGSATNFRNPMAVGQAIAN--------NLPQSNIIESISVAGPG 60

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIG 360
           ++N+ LS  +  ++I+D++V G++   P L  K R ++DFSSPNIAKEMHVGH+RSTIIG
Sbjct: 61  YINITLSSNWIAQRIQDMLVCGIKTWAPILPVK-RAVLDFSSPNIAKEMHVGHIRSTIIG 119

Query: 361 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESK 419
           DT++ + E+   +V+R NHVGDWGTQFGMLI  L ++FPD+    +  + DLQ+FYK SK
Sbjct: 120 DTLAHMFEFTNVEVLRRNHVGDWGTQFGMLIEFLFEQFPDWEDVGNQAVGDLQSFYKASK 179

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESF 479
           KRFD+D  FK+RA Q        +  Y+ AW+ IC +SR +F  +Y RLNV L E+GESF
Sbjct: 180 KRFDDDPDFKERARQA-----GGEDKYRAAWKKICQISRMEFDLVYKRLNVKLEEKGESF 234

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI 539
           Y  ++  ++  L  KGL+    G ++++ ED    P+ ++K DGGF Y ++DLAA+  R+
Sbjct: 235 YNPYIPPVLEELTNKGLIVESKGARVIFVEDH---PLIVIKQDGGFNYASTDLAALWYRL 291

Query: 540 EEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 599
             EKA+WI+YVTD+GQ  HF +L  +  +      L E  G    + +HVG     FG++
Sbjct: 292 NVEKAEWIIYVTDVGQQRHFHMLFTAAKMA---GWLPEQNGKKYPKASHVG-----FGLV 343

Query: 600 IAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           +     +F    T+   +  L     E+K R
Sbjct: 344 LGSDGKRF---RTRCSEVVRLVDLLDEAKAR 371



 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/347 (41%), Positives = 195/347 (56%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++ + E+   +V+R NHVGDWGTQFGMLI  L ++FPD+    +  + DLQ+F
Sbjct: 115 STIIGDTLAHMFEFTNVEVLRRNHVGDWGTQFGMLIEFLFEQFPDWEDVGNQAVGDLQSF 174

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SKKRFD+D  FK+RA Q        +  Y+ AW+ IC +SR +F  +Y RLNV L E
Sbjct: 175 YKASKKRFDDDPDFKERARQA-----GGEDKYRAAWKKICQISRMEFDLVYKRLNVKLEE 229

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++  ++  L  KG                                       
Sbjct: 230 KGESFYNPYIPPVLEELTNKGLIVESKGARVIFVEDHPLIVIKQDGGFNYASTDLAALWY 289

Query: 705 NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL---NPNK-TRMDFVGFGVVLGEDRK 760
            L++ K   I+YVTD+GQ  HF +L   AK AG L   N  K  +   VGFG+VLG D K
Sbjct: 290 RLNVEKAEWIIYVTDVGQQRHFHMLFTAAKMAGWLPEQNGKKYPKASHVGFGLVLGSDGK 349

Query: 761 KFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYA 816
           +F+TR  + V+L +LLDE   RS    + +     +  + T  EL    +A+ YG +KY+
Sbjct: 350 RFRTRCSEVVRLVDLLDEAKARSKAQLIKRFTGNGQIADWTDDELDRTSEAIGYGAVKYS 409

Query: 817 DLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           DL +NR  DY FSFD+ML D+GNTAVYL YA+ RI SI R A  + E
Sbjct: 410 DLKNNRLTDYTFSFDQMLSDKGNTAVYLQYAHARICSIIRKASKDVE 456



 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 91/160 (56%), Gaps = 3/160 (1%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            + +     +  + T  EL    +A+ YG +KY+DL +NR  DY FSFD+ML D+GNTAVY
Sbjct: 377  IKRFTGNGQIADWTDDELDRTSEAIGYGAVKYSDLKNNRLTDYTFSFDQMLSDKGNTAVY 436

Query: 994  LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLC 1053
            L YA+ RI SI R A  + E L++      ++L H  E  L   L++  +V+     DL 
Sbjct: 437  LQYAHARICSIIRKASKDVEKLKMTGA---ITLGHPYERFLGLHLIQFTEVVEQACADLQ 493

Query: 1054 LHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGR 1093
             H LC+YLY +S  FS+FY NC  +E    G +  + +GR
Sbjct: 494  PHRLCDYLYSLSLTFSKFYTNCQVLENPKLGFLLRLGSGR 533



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 66/108 (61%), Gaps = 12/108 (11%)

Query: 48  FGDFQCNDAMAL-CKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           FGD+QCN+AM++  +I       +NP  + Q+IA+        N   + +I+ I  A PG
Sbjct: 9   FGDYQCNNAMSVFSRIRGSATNFRNPMAVGQAIAN--------NLPQSNIIESISVAGPG 60

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           ++N+ LS  +  ++++D++V G++   P L  K R ++DFSSPNIA++
Sbjct: 61  YINITLSSNWIAQRIQDMLVCGIKTWAPILPVK-RAVLDFSSPNIAKE 107


>gi|427738655|ref|YP_007058199.1| arginyl-tRNA synthetase [Rivularia sp. PCC 7116]
 gi|427373696|gb|AFY57652.1| arginyl-tRNA synthetase [Rivularia sp. PCC 7116]
          Length = 586

 Score =  293 bits (750), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 156/327 (47%), Positives = 213/327 (65%), Gaps = 25/327 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N A++L K    K     P DIA  +          N  ++ + +K E+A PG
Sbjct: 38  EFGDYQANMALSLAKKLGQK-----PRDIANQVVE--------NLDVSDICEKPEIAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L   Y   Q+  I  +   GV  PT  +  R +VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85  FINLRLQTSYLEAQLNSIQKDERLGV--PTAKQPKREVVDFSSPNIAKEMHVGHLRSTII 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKE 417
           GD I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  P  LT +    I DL  FYK+
Sbjct: 143 GDAIARILEFRGHDVIRLNHVGDWGTQFGMLITNLREVSPSALTTANALDIGDLVNFYKQ 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +KKRFDEDE F++++   VV LQ    D   AW+++C+ SR++FQ IYD L++ + ERGE
Sbjct: 203 AKKRFDEDEEFQEKSRNEVVKLQAGAEDTIHAWKLLCEQSRKEFQVIYDLLDIKVEERGE 262

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDL 532
           SFY   + ++V  L+K GLLE  DG K+++       D   +P+ + KSDGG+ Y T+DL
Sbjct: 263 SFYNPLLPEVVEDLDKAGLLESSDGAKVVFLKGFKNRDGQPLPLIVQKSDGGYNYATTDL 322

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
           AA+R RI++E+A  ++YVTD GQ  HF
Sbjct: 323 AALRHRIQKEEAKRLIYVTDAGQANHF 349



 Score =  251 bits (640), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/355 (41%), Positives = 202/355 (56%), Gaps = 53/355 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  P  LT +    I DL  
Sbjct: 139 STIIGDAIARILEFRGHDVIRLNHVGDWGTQFGMLITNLREVSPSALTTANALDIGDLVN 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++KKRFDEDE F++++   VV LQ    D   AW+++C+ SR++FQ IYD L++ + 
Sbjct: 199 FYKQAKKRFDEDEEFQEKSRNEVVKLQAGAEDTIHAWKLLCEQSRKEFQVIYDLLDIKVE 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLS------------------------LTKKLG----- 713
           ERGESFY   + ++V  L+K G L                         + K  G     
Sbjct: 259 ERGESFYNPLLPEVVEDLDKAGLLESSDGAKVVFLKGFKNRDGQPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++YVTD GQ  HF  + + A +A  + P    +  V FG+VL
Sbjct: 319 TTDLAALRHRIQKEEAKRLIYVTDAGQANHFAGVFQVANRANWI-PEDVEIVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE---LSEAQQAVAYGC 812
           GED KK KTRSG+TV+L +LLDE + R  + L+ + +  E        ++   + V    
Sbjct: 378 GEDGKKLKTRSGETVRLRDLLDEAVSRCREDLEKRLKEEEGREETEDFIANVAKVVGISA 437

Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           +KYADLS NR  +Y FSFDKML  +GNTA Y+LYAY R  SI+R   I+ E+  E
Sbjct: 438 VKYADLSQNRTGNYKFSFDKMLALKGNTAPYMLYAYARTQSISRKGDIDYENLGE 492



 Score =  130 bits (328), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 105/169 (62%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   + V    +KYADLS NR  +Y FSFDKML  +GNTA Y+LYAY R  SI+R   I
Sbjct: 426  IANVAKVVGISAVKYADLSQNRTGNYKFSFDKMLALKGNTAPYMLYAYARTQSISRKGDI 485

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            + E+L    ++  + L+ E EF LAK +L++++V+  V ++L  + LCEYLY +S  F++
Sbjct: 486  DYENL---GENIKIVLKEEAEFTLAKHILQLDEVIAEVEKELLPNRLCEYLYQLSEKFNQ 542

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            F++NC  ++ +     + + T RL L + TA+ +K   ++L I  + +M
Sbjct: 543  FFENCPVLKSE-----EPIKTSRLALCDLTARTLKLGLNLLGIEVLERM 586



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 64/131 (48%), Gaps = 24/131 (18%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N A++L K    K     P DIA  +          N  ++ + +K E A PG
Sbjct: 38  EFGDYQANMALSLAKKLGQK-----PRDIANQVVE--------NLDVSDICEKPEIAGPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           F+N+ L   Y   Q+  I  +   GV  PT  +  R +VDFSSPNIA++      HL S 
Sbjct: 85  FINLRLQTSYLEAQLNSIQKDERLGV--PTAKQPKREVVDFSSPNIAKE--MHVGHLRST 140

Query: 164 IHDILISKAIA 174
           I    I  AIA
Sbjct: 141 I----IGDAIA 147


>gi|187453153|emb|CAQ34913.1| arginyl-tRNA synthetase [Canavalia ensiformis]
          Length = 595

 Score =  293 bits (749), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 174/433 (40%), Positives = 259/433 (59%), Gaps = 33/433 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           SV+  L+ +F  +++   P+  D    V +   K   KF D+QCN+AM+L    K K   
Sbjct: 10  SVKKQLAKLFEVSLRATVPDEPDVAPLVDACAAKSGVKFADYQCNNAMSLWAKIKGKQTG 69

Query: 266 -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            + P  + Q+I +        N   +++I+   +A PGFVN+ LS+ +  ++++ ++++G
Sbjct: 70  FRGPPALGQAIVA--------NLPQSEMIESCSIAGPGFVNIVLSKKWIAQRLEMMLIDG 121

Query: 325 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLG-HDVVRLNHVG 381
           +    P L  K+ V+VDFSSPNIAKEMHVGHLRSTIIGDT++R+LE+     ++R NH+G
Sbjct: 122 IDTWAPRLPVKV-VMVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFACVETLIRRNHLG 180

Query: 382 DWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           DWGTQFGMLIAHL D +P+        I DLQAFYK SK RFD D  FK RA Q VV LQ
Sbjct: 181 DWGTQFGMLIAHLFDMYPNPEDVNETAIGDLQAFYKASKVRFDNDPEFKLRAQQSVVLLQ 240

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
             D  Y+KAWE ICDVS+ +F+K+Y RL V +   GESF+   +   +  L+K GL+E  
Sbjct: 241 SGDKKYRKAWERICDVSKAEFEKVYKRLGVRVEAMGESFFNDLIPPTLEKLDKLGLIEDS 300

Query: 501 DGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           DG ++++ E   +IP+  VK DGG+ Y +SDLA++  R+  EK +W +YVTD+GQ  HF 
Sbjct: 301 DGARVIFVEGV-NIPIIAVKRDGGYNYFSSDLASLWYRLNVEKLEWNIYVTDVGQWQHFD 359

Query: 561 LLEESTIIGDTISRLLEYLG---HDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           +L ++        R   +L    +D  +  H+G     FG+++     +F    +++  +
Sbjct: 360 MLFKAF-------RRAGWLPKDENDFPKCTHIG-----FGLVLGEDGKRFRSRSSETVRL 407

Query: 618 ADLQAFYKESKKR 630
            DL     E+K+R
Sbjct: 408 VDL---LDEAKRR 417



 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 148/346 (42%), Positives = 206/346 (59%), Gaps = 46/346 (13%)

Query: 565 STIIGDTISRLLEYLG-HDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQA 622
           STIIGDT++R+LE+     ++R NH+GDWGTQFGMLIAHL D +P+        I DLQA
Sbjct: 154 STIIGDTLARMLEFACVETLIRRNHLGDWGTQFGMLIAHLFDMYPNPEDVNETAIGDLQA 213

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK SK RFD D  FK RA Q VV LQ  D  Y+KAWE ICDVS+ +F+K+Y RL V + 
Sbjct: 214 FYKASKVRFDNDPEFKLRAQQSVVLLQSGDKKYRKAWERICDVSKAEFEKVYKRLGVRVE 273

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL-----------------------------------S 707
             GESF+   +   +  L+K G +                                   S
Sbjct: 274 AMGESFFNDLIPPTLEKLDKLGLIEDSDGARVIFVEGVNIPIIAVKRDGGYNYFSSDLAS 333

Query: 708 LTKKLGI------VYVTDLGQGVHFRLLEECAKKAGILNPNKT---RMDFVGFGVVLGED 758
           L  +L +      +YVTD+GQ  HF +L +  ++AG L  ++    +   +GFG+VLGED
Sbjct: 334 LWYRLNVEKLEWNIYVTDVGQWQHFDMLFKAFRRAGWLPKDENDFPKCTHIGFGLVLGED 393

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADL 818
            K+F++RS +TV+L +LLDE  RR    L +++   + +  E+ +  +A+ YG +KYADL
Sbjct: 394 GKRFRSRSSETVRLVDLLDEAKRRCKSALLERDAAKDWSEEEIEKTSEAIGYGAVKYADL 453

Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
             NR  +Y F+FD+ML+D+GNTAVYLLYA+ RI SI R +G + E+
Sbjct: 454 KINRLTNYTFNFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEE 499



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 117/190 (61%), Gaps = 11/190 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            RR    L +++   + +  E+ +  +A+ YG +KYADL  NR  +Y F+FD+ML+D+GNT
Sbjct: 416  RRCKSALLERDAAKDWSEEEIEKTSEAIGYGAVKYADLKINRLTNYTFNFDQMLNDKGNT 475

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            AVYLLYA+ RI SI R +G + E+L+   ++  + L HE E AL   L++  +V +    
Sbjct: 476  AVYLLYAHARICSIIRKSGKDIEELK---KNGNIVLNHEDERALGLHLIQFPEVFVESLA 532

Query: 1051 DLCLHHLCEYLYDISTAFS-EFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
            +L  + LCEYLY+++  F+ +FY NC  I    +       T RLLL EATA VM+KCF 
Sbjct: 533  NLLPNVLCEYLYNLTEIFTKKFYTNCQVIGSPEQ-------TSRLLLCEATATVMRKCFY 585

Query: 1110 ILNIRTVHKM 1119
            +L I  V+K+
Sbjct: 586  LLGIDPVYKL 595



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 12/146 (8%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           SV+  L+ +F  +++   P+  D    V +   K   KF D+QCN+AM+L    K K   
Sbjct: 10  SVKKQLAKLFEVSLRATVPDEPDVAPLVDACAAKSGVKFADYQCNNAMSLWAKIKGKQTG 69

Query: 70  -KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            + P  + Q+I +        N   +++I+    A PGFVN+ LS+ +  ++++ ++++G
Sbjct: 70  FRGPPALGQAIVA--------NLPQSEMIESCSIAGPGFVNIVLSKKWIAQRLEMMLIDG 121

Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARK 152
           +    P L  K+ V+VDFSSPNIA++
Sbjct: 122 IDTWAPRLPVKV-VMVDFSSPNIAKE 146


>gi|376282463|ref|YP_005156289.1| arginyl-tRNA synthetase [Chlamydia trachomatis A2497]
 gi|385270153|ref|YP_005813313.1| arginyl-tRNA synthetase [Chlamydia trachomatis A2497]
 gi|347975293|gb|AEP35314.1| Arginyl-tRNA synthetase [Chlamydia trachomatis A2497]
 gi|371908493|emb|CAX09123.1| arginyl-tRNA synthetase [Chlamydia trachomatis A2497]
 gi|438691472|emb|CCP48746.1| arginyl-tRNA synthetase [Chlamydia trachomatis A/5291]
          Length = 563

 Score =  293 bits (749), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 156/365 (42%), Positives = 227/365 (62%), Gaps = 27/365 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++ +     
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVLR----- 54

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---IV 322
           K+P  IA+SI     + +   P        IE+A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 323 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           NG +  +  K   V++DFSSPNIAK+MHVGHLRSTIIGD ++R   ++GHDV+RLNH+GD
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGD 162

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           WGT FGMLI +LQ+   + + +   + DL A YK++  RF ED  FKKR+   VVALQ  
Sbjct: 163 WGTAFGMLITYLQETSQEAIHQ---LEDLTALYKKAHARFAEDSEFKKRSQHNVVALQSG 219

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           D      W+ IC VS + FQ IY  L+V L  RGESFY   + ++V  LE K L+ L DG
Sbjct: 220 DAQALALWKQICSVSEKSFQTIYSILDVELHTRGESFYNPFLAEVVADLESKNLVTLSDG 279

Query: 503 RKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
            K ++ E   SIP+ I KSDGG+ Y T+D+AA+R RI++++AD I+ VTD GQ +HF+LL
Sbjct: 280 AKCVFHEAF-SIPLMIQKSDGGYNYATTDVAAMRYRIQQDQADRILIVTDSGQSLHFQLL 338

Query: 563 EESTI 567
           E + +
Sbjct: 339 EATCL 343



 Score =  239 bits (610), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 141/345 (40%), Positives = 186/345 (53%), Gaps = 47/345 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R   ++GHDV+RLNH+GDWGT FGMLI +LQ+   + + +   + DL A Y
Sbjct: 136 STIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETSQEAIHQ---LEDLTALY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  D      W+ IC VS + FQ IY  L+V L  R
Sbjct: 193 KKAHARFAEDSEFKKRSQHNVVALQSGDAQALALWKQICSVSEKSFQTIYSILDVELHTR 252

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + ++V  LE K  ++L+     V+                            
Sbjct: 253 GESFYNPFLAEVVADLESKNLVTLSDGAKCVFHEAFSIPLMIQKSDGGYNYATTDVAAMR 312

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD GQ +HF+LLE      G L P+K     VGFG+VL    +KFK
Sbjct: 313 YRIQQDQADRILIVTDSGQSLHFQLLEATCLAVGYL-PSKGIFSHVGFGLVLDTQGRKFK 371

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + ++ + L  K    +++  EL+     +    IKYADLS +R 
Sbjct: 372 TRSGENIKLRELLDTAVEKAKESL--KAHRPDISEEELAYQGPILGINAIKYADLSSHRI 429

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
            DYVFSF+KML   GNTA+ LLYAY RI  I R  G+ S    EP
Sbjct: 430 NDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGLESLPQEEP 474



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 18/196 (9%)

Query: 930  LRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            LR  LD   +K + +      +++  EL+     +    IKYADLS +R  DYVFSF+KM
Sbjct: 380  LRELLDTAVEKAKESLKAHRPDISEEELAYQGPILGINAIKYADLSSHRINDYVFSFEKM 439

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            L   GNTA+ LLYAY RI  I R  G+ S       Q  P+++    E ALA TLLR  +
Sbjct: 440  LRFEGNTAMSLLYAYVRIQGIKRRMGLES-----LPQEEPLAIHEPAEEALALTLLRFPE 494

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
            +L L  R+LC H L +YLY ++  F+ F+ +C+    D++ +       RL L   T + 
Sbjct: 495  ILDLTLRELCPHFLTDYLYALTNKFNAFFRDCHIEGSDSQQE-------RLYLCGLTERT 547

Query: 1104 MKKCFDILNIRTVHKM 1119
            +     +L ++T++ +
Sbjct: 548  LSTGMHLLGLKTLNHL 563



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 23/145 (15%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++      +
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVL-----R 54

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---IV 126
           K+P  IA+SI     + +   P        IE A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAR 151
           NG +  +  K   V++DFSSPNIA+
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAK 127


>gi|76789190|ref|YP_328276.1| arginyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|237804804|ref|YP_002888958.1| arginyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|109894982|sp|Q3KLP4.1|SYR_CHLTA RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|76167720|gb|AAX50728.1| arginyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|231273104|emb|CAX10017.1| arginyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|438690387|emb|CCP49644.1| arginyl-tRNA synthetase [Chlamydia trachomatis A/7249]
 gi|438692845|emb|CCP47847.1| arginyl-tRNA synthetase [Chlamydia trachomatis A/363]
          Length = 563

 Score =  292 bits (748), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 156/365 (42%), Positives = 227/365 (62%), Gaps = 27/365 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++ +     
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVLR----- 54

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---IV 322
           K+P  IA+SI     + +   P        IE+A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 323 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           NG +  +  K   V++DFSSPNIAK+MHVGHLRSTIIGD ++R   ++GHDV+RLNH+GD
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGD 162

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           WGT FGMLI +LQ+   + + +   + DL A YK++  RF ED  FKKR+   VVALQ  
Sbjct: 163 WGTAFGMLITYLQETSQEAIHQ---LEDLTALYKKAHARFAEDSEFKKRSQHNVVALQSG 219

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           D      W+ IC VS + FQ IY  L+V L  RGESFY   + ++V  LE K L+ L DG
Sbjct: 220 DAQALALWKQICSVSEKSFQTIYSILDVELHTRGESFYNPFLAEVVADLESKNLVTLSDG 279

Query: 503 RKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
            K ++ E   SIP+ I KSDGG+ Y T+D+AA+R RI++++AD I+ VTD GQ +HF+LL
Sbjct: 280 AKCVFHEAF-SIPLMIQKSDGGYNYATTDVAAMRYRIQQDQADRILIVTDSGQSLHFQLL 338

Query: 563 EESTI 567
           E + +
Sbjct: 339 EATCL 343



 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 142/345 (41%), Positives = 187/345 (54%), Gaps = 47/345 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R   ++GHDV+RLNH+GDWGT FGMLI +LQ+   + + +   + DL A Y
Sbjct: 136 STIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETSQEAIHQ---LEDLTALY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  D      W+ IC VS + FQ IY  L+V L  R
Sbjct: 193 KKAHARFAEDSEFKKRSQHNVVALQSGDAQALALWKQICSVSEKSFQTIYSILDVELHTR 252

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + ++V  LE K  ++L+     V+                            
Sbjct: 253 GESFYNPFLAEVVADLESKNLVTLSDGAKCVFHEAFSIPLMIQKSDGGYNYATTDVAAMR 312

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD GQ +HF+LLE     AG L P+K     VGFG+VL    +KFK
Sbjct: 313 YRIQQDQADRILIVTDSGQSLHFQLLEATCLAAGYL-PSKGIFSHVGFGLVLDTQGRKFK 371

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + ++ + L  K    +++  EL+     +    IKYADLS +R 
Sbjct: 372 TRSGENIKLRELLDTAVEKAKESL--KAHRPDISEEELAYQGPILGINAIKYADLSSHRI 429

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
            DYVFSF+KML   GNTA+ LLYAY RI  I R  G+ S    EP
Sbjct: 430 NDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGLESLPQEEP 474



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 18/196 (9%)

Query: 930  LRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            LR  LD   +K + +      +++  EL+     +    IKYADLS +R  DYVFSF+KM
Sbjct: 380  LRELLDTAVEKAKESLKAHRPDISEEELAYQGPILGINAIKYADLSSHRINDYVFSFEKM 439

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            L   GNTA+ LLYAY RI  I R  G+ S       Q  P+++    E ALA TLLR  +
Sbjct: 440  LRFEGNTAMSLLYAYVRIQGIKRRMGLES-----LPQEEPLAIHEPAEEALALTLLRFPE 494

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
            +L L  R+LC H L +YLY ++  F+ F+ +C+    D++ +       RL L   T + 
Sbjct: 495  ILDLTLRELCPHFLTDYLYALTNKFNAFFRDCHIEGSDSQQE-------RLYLCGLTERT 547

Query: 1104 MKKCFDILNIRTVHKM 1119
            +     +L ++T++ +
Sbjct: 548  LSTGMHLLGLKTLNHL 563



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 23/145 (15%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++      +
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVL-----R 54

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---IV 126
           K+P  IA+SI     + +   P        IE A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAR 151
           NG +  +  K   V++DFSSPNIA+
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAK 127


>gi|166154668|ref|YP_001654786.1| arginyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166155543|ref|YP_001653798.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335938|ref|ZP_07224182.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|339626132|ref|YP_004717611.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2c]
 gi|165930656|emb|CAP04153.1| arginyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165931531|emb|CAP07107.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|339461264|gb|AEJ77767.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2c]
 gi|440526263|emb|CCP51747.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/8200/07]
 gi|440536088|emb|CCP61601.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/795]
 gi|440536981|emb|CCP62495.1| arginyl-tRNA synthetase [Chlamydia trachomatis L1/440/LN]
 gi|440537870|emb|CCP63384.1| arginyl-tRNA synthetase [Chlamydia trachomatis L1/1322/p2]
 gi|440538760|emb|CCP64274.1| arginyl-tRNA synthetase [Chlamydia trachomatis L1/115]
 gi|440539649|emb|CCP65163.1| arginyl-tRNA synthetase [Chlamydia trachomatis L1/224]
 gi|440540541|emb|CCP66055.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2/25667R]
 gi|440541429|emb|CCP66943.1| arginyl-tRNA synthetase [Chlamydia trachomatis L3/404/LN]
 gi|440542316|emb|CCP67830.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-2]
 gi|440543207|emb|CCP68721.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/Canada2]
 gi|440544098|emb|CCP69612.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/LST]
 gi|440544988|emb|CCP70502.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/Ams1]
 gi|440545878|emb|CCP71392.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/CV204]
 gi|440914140|emb|CCP90557.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/Ams2]
 gi|440915030|emb|CCP91447.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/Ams3]
 gi|440915921|emb|CCP92338.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/Canada1]
 gi|440916816|emb|CCP93233.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/Ams4]
 gi|440917706|emb|CCP94123.1| arginyl-tRNA synthetase [Chlamydia trachomatis L2b/Ams5]
          Length = 563

 Score =  292 bits (748), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 156/365 (42%), Positives = 227/365 (62%), Gaps = 27/365 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++ +     
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVLR----- 54

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---IV 322
           K+P  IA+SI     + +   P        IE+A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 323 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           NG +  +  K   V++DFSSPNIAK+MHVGHLRSTIIGD ++R   ++GHDV+RLNH+GD
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGD 162

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           WGT FGMLI +LQ+   + + +   + DL A YK++  RF ED  FKKR+   VVALQ  
Sbjct: 163 WGTAFGMLITYLQETSQEAIHQ---LEDLTALYKKAHARFAEDSEFKKRSQHNVVALQSG 219

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           D      W+ IC VS + FQ IY  L+V L  RGESFY   + ++V  LE K L+ L DG
Sbjct: 220 DAQALALWKQICSVSEKSFQTIYSILDVELHTRGESFYNPFLAEVVADLESKNLVTLSDG 279

Query: 503 RKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
            K ++ E   SIP+ I KSDGG+ Y T+D+AA+R RI++++AD I+ VTD GQ +HF+LL
Sbjct: 280 AKCVFHEAF-SIPLMIQKSDGGYNYATTDVAAMRYRIQQDQADRILIVTDSGQSLHFQLL 338

Query: 563 EESTI 567
           E + +
Sbjct: 339 EATCL 343



 Score =  239 bits (609), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 142/347 (40%), Positives = 188/347 (54%), Gaps = 49/347 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R   ++GHDV+RLNH+GDWGT FGMLI +LQ+   + + +   + DL A Y
Sbjct: 136 STIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETSQEAIHQ---LEDLTALY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  D      W+ IC VS + FQ IY  L+V L  R
Sbjct: 193 KKAHARFAEDSEFKKRSQHNVVALQSGDAQALALWKQICSVSEKSFQTIYSILDVELHTR 252

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + ++V  LE K  ++L+     V+                            
Sbjct: 253 GESFYNPFLAEVVADLESKNLVTLSDGAKCVFHEAFSIPLMIQKSDGGYNYATTDVAAMR 312

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD GQ +HF+LLE     AG L P+K     VGFG+VL    +KFK
Sbjct: 313 YRIQQDQADRILIVTDSGQSLHFQLLEATCLAAGYL-PSKGIFSHVGFGLVLDTQGRKFK 371

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + ++ + L  K    +++  EL+     +    IKYADLS +R 
Sbjct: 372 TRSGENIKLRELLDTAVEKAKESL--KAHRPDISEEELAYQGPILGINAIKYADLSSHRI 429

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDP 870
            DYVFSF+KML   GNTA+ LLYAY RI  I R  G+  E  P+  P
Sbjct: 430 NDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGL--ESLPQEGP 474



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 18/196 (9%)

Query: 930  LRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            LR  LD   +K + +      +++  EL+     +    IKYADLS +R  DYVFSF+KM
Sbjct: 380  LRELLDTAVEKAKESLKAHRPDISEEELAYQGPILGINAIKYADLSSHRINDYVFSFEKM 439

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            L   GNTA+ LLYAY RI  I R  G+ S       Q  P+++    E ALA TLLR  +
Sbjct: 440  LRFEGNTAMSLLYAYVRIQGIKRRMGLES-----LPQEGPLAIHEPAEEALALTLLRFPE 494

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
            +L L  R+LC H L +YLY ++  F+ F+ +C+    D++ +       RL L   T + 
Sbjct: 495  ILDLTLRELCPHFLTDYLYALTNKFNTFFRDCHIEGSDSQQE-------RLYLCGLTERT 547

Query: 1104 MKKCFDILNIRTVHKM 1119
            +     +L ++T++ +
Sbjct: 548  LSTGMHLLGLKTLNHL 563



 Score = 70.5 bits (171), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 23/145 (15%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++      +
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVL-----R 54

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---IV 126
           K+P  IA+SI     + +   P        IE A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAR 151
           NG +  +  K   V++DFSSPNIA+
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAK 127


>gi|255348827|ref|ZP_05380834.1| arginyl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503367|ref|ZP_05381757.1| arginyl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|255507045|ref|ZP_05382684.1| arginyl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|385241832|ref|YP_005809672.1| arginyl-tRNA synthetase [Chlamydia trachomatis E/11023]
 gi|385245439|ref|YP_005814262.1| arginyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|386262811|ref|YP_005816090.1| arginyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|389858150|ref|YP_006360392.1| arginyl-tRNA synthetase [Chlamydia trachomatis F/SW4]
 gi|389859026|ref|YP_006361267.1| arginyl-tRNA synthetase [Chlamydia trachomatis E/SW3]
 gi|389859902|ref|YP_006362142.1| arginyl-tRNA synthetase [Chlamydia trachomatis F/SW5]
 gi|289525499|emb|CBJ14976.1| arginyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296435055|gb|ADH17233.1| arginyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296438775|gb|ADH20928.1| arginyl-tRNA synthetase [Chlamydia trachomatis E/11023]
 gi|380249222|emb|CCE14514.1| arginyl-tRNA synthetase [Chlamydia trachomatis F/SW5]
 gi|380250097|emb|CCE13625.1| arginyl-tRNA synthetase [Chlamydia trachomatis F/SW4]
 gi|380250975|emb|CCE12736.1| arginyl-tRNA synthetase [Chlamydia trachomatis E/SW3]
 gi|440527161|emb|CCP52645.1| arginyl-tRNA synthetase [Chlamydia trachomatis D/SotonD1]
 gi|440529835|emb|CCP55319.1| arginyl-tRNA synthetase [Chlamydia trachomatis E/SotonE4]
 gi|440530734|emb|CCP56218.1| arginyl-tRNA synthetase [Chlamydia trachomatis E/SotonE8]
 gi|440531625|emb|CCP57135.1| arginyl-tRNA synthetase [Chlamydia trachomatis F/SotonF3]
 gi|440535202|emb|CCP60712.1| arginyl-tRNA synthetase [Chlamydia trachomatis E/Bour]
          Length = 563

 Score =  292 bits (748), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 156/365 (42%), Positives = 227/365 (62%), Gaps = 27/365 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++ +     
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVLR----- 54

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---IV 322
           K+P  IA+SI     + +   P        IE+A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 323 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           NG +  +  K   V++DFSSPNIAK+MHVGHLRSTIIGD ++R   ++GHDV+RLNH+GD
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGD 162

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           WGT FGMLI +LQ+   + + +   + DL A YK++  RF ED  FKKR+   VVALQ  
Sbjct: 163 WGTAFGMLITYLQETSQEAIHQ---LEDLTALYKKAHARFAEDSEFKKRSQHNVVALQSG 219

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           D      W+ IC VS + FQ IY  L+V L  RGESFY   + ++V  LE K L+ L DG
Sbjct: 220 DAQALALWKQICSVSEKSFQTIYSILDVELHTRGESFYNPFLAEVVADLESKNLVTLSDG 279

Query: 503 RKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
            K ++ E   SIP+ I KSDGG+ Y T+D+AA+R RI++++AD I+ VTD GQ +HF+LL
Sbjct: 280 AKCVFHEAF-SIPLMIQKSDGGYNYATTDVAAMRYRIQQDQADRILIVTDSGQSLHFQLL 338

Query: 563 EESTI 567
           E + +
Sbjct: 339 EATCL 343



 Score =  237 bits (605), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 141/347 (40%), Positives = 188/347 (54%), Gaps = 49/347 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R   ++GHDV+RLNH+GDWGT FGMLI +LQ+   + + +   + DL A Y
Sbjct: 136 STIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETSQEAIHQ---LEDLTALY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  D      W+ IC VS + FQ IY  L+V L  R
Sbjct: 193 KKAHARFAEDSEFKKRSQHNVVALQSGDAQALALWKQICSVSEKSFQTIYSILDVELHTR 252

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + ++V  LE K  ++L+     V+                            
Sbjct: 253 GESFYNPFLAEVVADLESKNLVTLSDGAKCVFHEAFSIPLMIQKSDGGYNYATTDVAAMR 312

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD GQ +HF+LLE     AG L P+K     VGFG+VL    +KFK
Sbjct: 313 YRIQQDQADRILIVTDSGQSLHFQLLEATCLAAGYL-PSKGIFSHVGFGLVLDTQGRKFK 371

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + ++ + L  K    +++  +L+     +    IKYADLS +R 
Sbjct: 372 TRSGENIKLRELLDTAVEKAKESL--KAHRPDISEEDLAYQGPILGINAIKYADLSSHRI 429

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDP 870
            DYVFSF+KML   GNTA+ LLYAY RI  I R  G+  E  P+  P
Sbjct: 430 NDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGL--ESLPQEGP 474



 Score =  109 bits (272), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 18/196 (9%)

Query: 930  LRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            LR  LD   +K + +      +++  +L+     +    IKYADLS +R  DYVFSF+KM
Sbjct: 380  LRELLDTAVEKAKESLKAHRPDISEEDLAYQGPILGINAIKYADLSSHRINDYVFSFEKM 439

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            L   GNTA+ LLYAY RI  I R  G+ S       Q  P+++    E ALA TLLR  +
Sbjct: 440  LRFEGNTAMSLLYAYVRIQGIKRRMGLES-----LPQEGPLAIHEPAEEALALTLLRFPE 494

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
            +L L  R+LC H L +YLY ++  F+ F+ +C+    D++ +       RL L   T + 
Sbjct: 495  ILDLTLRELCPHFLTDYLYALTNKFNTFFRDCHIEGSDSQQE-------RLYLCGLTERT 547

Query: 1104 MKKCFDILNIRTVHKM 1119
            +     +L ++T++ +
Sbjct: 548  LSTGMHLLGLKTLNHL 563



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 23/145 (15%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++      +
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVL-----R 54

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---IV 126
           K+P  IA+SI     + +   P        IE A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAR 151
           NG +  +  K   V++DFSSPNIA+
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAK 127


>gi|15605181|ref|NP_219967.1| arginyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|255311266|ref|ZP_05353836.1| arginyl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317568|ref|ZP_05358814.1| arginyl-tRNA synthetase [Chlamydia trachomatis 6276s]
 gi|385240901|ref|YP_005808742.1| arginyl-tRNA synthetase [Chlamydia trachomatis G/11222]
 gi|385243662|ref|YP_005811508.1| arginyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|385244542|ref|YP_005812386.1| arginyl-tRNA synthetase [Chlamydia trachomatis D-LC]
 gi|7674345|sp|O84460.1|SYR_CHLTR RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|3328887|gb|AAC68054.1| Arginyl tRNA Transferase [Chlamydia trachomatis D/UW-3/CX]
 gi|296436909|gb|ADH19079.1| arginyl-tRNA synthetase [Chlamydia trachomatis G/11222]
 gi|297748585|gb|ADI51131.1| Arginyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749465|gb|ADI52143.1| Arginyl-tRNA synthetase [Chlamydia trachomatis D-LC]
 gi|440525376|emb|CCP50627.1| arginyl-tRNA synthetase [Chlamydia trachomatis K/SotonK1]
 gi|440528053|emb|CCP53537.1| arginyl-tRNA synthetase [Chlamydia trachomatis D/SotonD5]
 gi|440528943|emb|CCP54427.1| arginyl-tRNA synthetase [Chlamydia trachomatis D/SotonD6]
 gi|440532518|emb|CCP58028.1| arginyl-tRNA synthetase [Chlamydia trachomatis G/SotonG1]
          Length = 563

 Score =  292 bits (747), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 156/365 (42%), Positives = 226/365 (61%), Gaps = 27/365 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++       
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVLH----- 54

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---IV 322
           K+P  IA+SI     + +   P        IE+A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPTP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 323 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           NG +  +  K   V++DFSSPNIAK+MHVGHLRSTIIGD ++R   ++GHDV+RLNH+GD
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGD 162

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           WGT FGMLI +LQ+   + + +   + DL A YK++  RF ED  FKKR+   VVALQ  
Sbjct: 163 WGTAFGMLITYLQETSQEAIHQ---LEDLTALYKKAHARFAEDSEFKKRSQHNVVALQSG 219

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           D      W+ IC VS + FQ IY  L+V L  RGESFY   + ++V  LE K L+ L DG
Sbjct: 220 DAQALALWKQICSVSEKSFQTIYSILDVELHTRGESFYNPFLAEVVADLESKNLVTLSDG 279

Query: 503 RKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
            K ++ E   SIP+ I KSDGG+ Y T+D+AA+R RI++++AD I+ VTD GQ +HF+LL
Sbjct: 280 AKCVFHEAF-SIPLMIQKSDGGYNYATTDVAAMRYRIQQDQADRILIVTDSGQSLHFQLL 338

Query: 563 EESTI 567
           E + +
Sbjct: 339 EATCL 343



 Score =  243 bits (620), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 143/347 (41%), Positives = 189/347 (54%), Gaps = 49/347 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R   ++GHDV+RLNH+GDWGT FGMLI +LQ+   + + +   + DL A Y
Sbjct: 136 STIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETSQEAIHQ---LEDLTALY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  D      W+ IC VS + FQ IY  L+V L  R
Sbjct: 193 KKAHARFAEDSEFKKRSQHNVVALQSGDAQALALWKQICSVSEKSFQTIYSILDVELHTR 252

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + ++V  LE K  ++L+     V+                            
Sbjct: 253 GESFYNPFLAEVVADLESKNLVTLSDGAKCVFHEAFSIPLMIQKSDGGYNYATTDVAAMR 312

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD GQ +HF+LLE     AG L P+K     VGFG+VL    +KFK
Sbjct: 313 YRIQQDQADRILIVTDSGQSLHFQLLEATCLAAGYL-PSKGIFSHVGFGLVLDTQGRKFK 371

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + ++ + L  K    +++  EL+     +    IKYADLS +R 
Sbjct: 372 TRSGENIKLRELLDTAVEKAKESL--KAHRPDISEEELAYQGPILGINAIKYADLSSHRI 429

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDP 870
            DYVFSF+KML   GNTA+ LLYAY RI  I R  G+  E PP+  P
Sbjct: 430 NDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGL--ESPPQEGP 474



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 18/196 (9%)

Query: 930  LRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            LR  LD   +K + +      +++  EL+     +    IKYADLS +R  DYVFSF+KM
Sbjct: 380  LRELLDTAVEKAKESLKAHRPDISEEELAYQGPILGINAIKYADLSSHRINDYVFSFEKM 439

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            L   GNTA+ LLYAY RI  I R  G+ S       Q  P+++    E ALA TLLR  +
Sbjct: 440  LRFEGNTAMSLLYAYVRIQGIKRRMGLES-----PPQEGPLAVHEPAEEALALTLLRFPE 494

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
            +L L  R+LC H L +YLY ++  F+ F+ +C+    D++ +       RL L   T + 
Sbjct: 495  ILDLTLRELCPHFLTDYLYALTNKFNAFFRDCHIEGSDSQQE-------RLYLCGLTERT 547

Query: 1104 MKKCFDILNIRTVHKM 1119
            +     +L ++T++ +
Sbjct: 548  LSTGMHLLGLKTLNHL 563



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 23/145 (15%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++       
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVL-----H 54

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---IV 126
           K+P  IA+SI     + +   P        IE A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPTP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAR 151
           NG +  +  K   V++DFSSPNIA+
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAK 127


>gi|385239977|ref|YP_005807819.1| arginyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|385242755|ref|YP_005810594.1| arginyl-tRNA synthetase [Chlamydia trachomatis G/9301]
 gi|385246364|ref|YP_005815186.1| arginyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|296435982|gb|ADH18156.1| arginyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296437843|gb|ADH20004.1| arginyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140343|gb|ADH97101.1| arginyl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 563

 Score =  292 bits (747), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 156/365 (42%), Positives = 226/365 (61%), Gaps = 27/365 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++       
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVLH----- 54

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---IV 322
           K+P  IA+SI     + +   P        IE+A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPTP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 323 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           NG +  +  K   V++DFSSPNIAK+MHVGHLRSTIIGD ++R   ++GHDV+RLNH+GD
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGD 162

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           WGT FGMLI +LQ+   + + +   + DL A YK++  RF ED  FKKR+   VVALQ  
Sbjct: 163 WGTAFGMLITYLQETSQEAIHQ---LEDLTALYKKAHARFAEDSEFKKRSQHNVVALQSG 219

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           D      W+ IC VS + FQ IY  L+V L  RGESFY   + ++V  LE K L+ L DG
Sbjct: 220 DAQALALWKQICSVSEKSFQTIYSILDVELHTRGESFYNPFLAEVVADLESKNLVTLSDG 279

Query: 503 RKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
            K ++ E   SIP+ I KSDGG+ Y T+D+AA+R RI++++AD I+ VTD GQ +HF+LL
Sbjct: 280 AKCVFHEAF-SIPLMIQKSDGGYNYATTDVAAMRYRIQQDQADRILIVTDSGQSLHFQLL 338

Query: 563 EESTI 567
           E + +
Sbjct: 339 EATCL 343



 Score =  243 bits (620), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 143/347 (41%), Positives = 189/347 (54%), Gaps = 49/347 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R   ++GHDV+RLNH+GDWGT FGMLI +LQ+   + + +   + DL A Y
Sbjct: 136 STIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETSQEAIHQ---LEDLTALY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  D      W+ IC VS + FQ IY  L+V L  R
Sbjct: 193 KKAHARFAEDSEFKKRSQHNVVALQSGDAQALALWKQICSVSEKSFQTIYSILDVELHTR 252

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + ++V  LE K  ++L+     V+                            
Sbjct: 253 GESFYNPFLAEVVADLESKNLVTLSDGAKCVFHEAFSIPLMIQKSDGGYNYATTDVAAMR 312

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD GQ +HF+LLE     AG L P+K     VGFG+VL    +KFK
Sbjct: 313 YRIQQDQADRILIVTDSGQSLHFQLLEATCLAAGYL-PSKGIFSHVGFGLVLDTQGRKFK 371

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + ++ + L  K    +++  EL+     +    IKYADLS +R 
Sbjct: 372 TRSGENIKLRELLDTAVEKAKESL--KAHRPDISEEELAYQGPILGINAIKYADLSSHRI 429

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDP 870
            DYVFSF+KML   GNTA+ LLYAY RI  I R  G+  E PP+  P
Sbjct: 430 NDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGL--ESPPQEGP 474



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 18/196 (9%)

Query: 930  LRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            LR  LD   +K + +      +++  EL+     +    IKYADLS +R  DYVFSF+KM
Sbjct: 380  LRELLDTAVEKAKESLKAHRPDISEEELAYQGPILGINAIKYADLSSHRINDYVFSFEKM 439

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            L   GNTA+ LLYAY RI  I R  G+ S       Q  P+++    E ALA TLLR  +
Sbjct: 440  LRFEGNTAMSLLYAYVRIQGIKRRMGLES-----PPQEGPLAVHGPAEEALALTLLRFPE 494

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
            +L L  R+LC H L +YLY ++  F+ F+ +C+    D++ +       RL L   T + 
Sbjct: 495  ILDLTLRELCPHFLTDYLYALTNKFNAFFRDCHIEGSDSQQE-------RLYLCGLTERT 547

Query: 1104 MKKCFDILNIRTVHKM 1119
            +     +L ++T++ +
Sbjct: 548  LSTGMHLLGLKTLNHL 563



 Score = 69.7 bits (169), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 23/145 (15%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++       
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVL-----H 54

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---IV 126
           K+P  IA+SI     + +   P        IE A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPTP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAR 151
           NG +  +  K   V++DFSSPNIA+
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAK 127


>gi|332709098|ref|ZP_08429067.1| arginyl-tRNA synthetase [Moorea producens 3L]
 gi|332352149|gb|EGJ31720.1| arginyl-tRNA synthetase [Moorea producens 3L]
          Length = 585

 Score =  292 bits (747), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 163/369 (44%), Positives = 232/369 (62%), Gaps = 37/369 (10%)

Query: 206 SVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           S+ + L   FT A+  AF     G     V ++N K    FGD+Q N A+AL K  K   
Sbjct: 3   SIVEQLRLQFTQALTAAFGSDVAGVDPMMVPASNPK----FGDYQSNVALALSKRLK--- 55

Query: 264 EKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV 322
             + P  IA+S+   +  +E+  +P+         +A PGF+N+ L   Y  E++++I  
Sbjct: 56  --QPPRAIAESLLQYIDVAEICQSPT---------IAGPGFINLSLKPAYLEERLREIHT 104

Query: 323 NGVQPPTLNKKL-----RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
           +    P L   +     +V+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ G +V+RL
Sbjct: 105 D----PRLGVAVAPAPRQVIVDFSSPNIAKEMHVGHLRSTIIGDSIARILEFRGQNVLRL 160

Query: 378 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQC 435
           NHVGDWGTQFGMLI +L++ +P  LT +    + DL   Y+++K+RFD DE F++ +   
Sbjct: 161 NHVGDWGTQFGMLITYLREAYPSALTTADALDLGDLVTLYRQAKQRFDADEEFREASRLE 220

Query: 436 VVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKG 495
           VV LQ    D ++AW+++CD SRR+FQ IYD L++ LTERGESFY   + ++V YL+K G
Sbjct: 221 VVKLQSGAADSRRAWQLLCDQSRREFQIIYDLLDIQLTERGESFYNTLLPEVVDYLDKSG 280

Query: 496 LLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           LL  D G K ++ E     D   +P+ + KSDGG+ Y T+DLAA+R R E+++A  I+YV
Sbjct: 281 LLVEDSGAKCVFLEGFTNKDGEPLPLIVQKSDGGYNYATTDLAALRYRTEQDQAQRIIYV 340

Query: 551 TDLGQGVHF 559
           TD GQ  HF
Sbjct: 341 TDSGQANHF 349



 Score =  268 bits (684), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 151/350 (43%), Positives = 204/350 (58%), Gaps = 52/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+I+R+LE+ G +V+RLNHVGDWGTQFGMLI +L++ +P  LT +  +   DL  
Sbjct: 139 STIIGDSIARILEFRGQNVLRLNHVGDWGTQFGMLITYLREAYPSALTTADALDLGDLVT 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
            Y+++K+RFD DE F++ +   VV LQ    D ++AW+++CD SRR+FQ IYD L++ LT
Sbjct: 199 LYRQAKQRFDADEEFREASRLEVVKLQSGAADSRRAWQLLCDQSRREFQIIYDLLDIQLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + ++V YL+K G L              T K G                 
Sbjct: 259 ERGESFYNTLLPEVVDYLDKSGLLVEDSGAKCVFLEGFTNKDGEPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + A++ GIL P    +  V FG+VL
Sbjct: 319 TTDLAALRYRTEQDQAQRIIYVTDSGQANHFAQVFQVARRTGIL-PENVEVVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLDE + RS   L+ + +      TE       + V    +
Sbjct: 378 GEDGKKLKTRSGETVRLRDLLDEAIARSGADLESRLKQEGREETEEFKEHVAKVVGMSAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NR  +Y+FSFDKML  +GNTA Y+LYAY RI  I+R   I+ E
Sbjct: 438 KYADLSQNRTSNYIFSFDKMLALQGNTAPYMLYAYVRIQGISRKGEIDFE 487



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 101/164 (61%), Gaps = 8/164 (4%)

Query: 956  QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL 1015
            + V    +KYADLS NR  +Y+FSFDKML  +GNTA Y+LYAY RI  I+R   I+ E L
Sbjct: 430  KVVGMSAVKYADLSQNRTSNYIFSFDKMLALQGNTAPYMLYAYVRIQGISRKGEIDFEQL 489

Query: 1016 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1075
               A+   + L+ + E  L K LL++++VL  V ++L  + LC+YL+++S  F++FYD C
Sbjct: 490  GTDAK---ILLQEDAELVLGKKLLQLSEVLGEVEKELMPNRLCQYLFELSQKFNQFYDQC 546

Query: 1076 YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              ++ +   +     T RLLL + TA+ +K    +L I+ + +M
Sbjct: 547  PVLKAEEPKR-----TSRLLLCDLTARTLKLGLYLLGIQVLERM 585



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 30/151 (19%)

Query: 10  SVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           S+ + L   FT A+  AF     G     V ++N K    FGD+Q N A+AL K  K   
Sbjct: 3   SIVEQLRLQFTQALTAAFGSDVAGVDPMMVPASNPK----FGDYQSNVALALSKRLK--- 55

Query: 68  EKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
             + P  IA+S+   +  +E+  +P++A          PGF+N+ L   Y  E++++I  
Sbjct: 56  --QPPRAIAESLLQYIDVAEICQSPTIAG---------PGFINLSLKPAYLEERLREIHT 104

Query: 127 NGVQPPTLNKKL-----RVLVDFSSPNIARK 152
           +    P L   +     +V+VDFSSPNIA++
Sbjct: 105 D----PRLGVAVAPAPRQVIVDFSSPNIAKE 131


>gi|302802969|ref|XP_002983238.1| hypothetical protein SELMODRAFT_155706 [Selaginella moellendorffii]
 gi|300148923|gb|EFJ15580.1| hypothetical protein SELMODRAFT_155706 [Selaginella moellendorffii]
          Length = 536

 Score =  291 bits (746), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 225/360 (62%), Gaps = 27/360 (7%)

Query: 253 MALCKIFKDK-GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRV 311
           M +    K K  E +NP +IAQSI          N      ++   VA PGF+NV LS V
Sbjct: 1   MGIWSTIKGKETEFRNPREIAQSITR--------NFPQTGFVETTSVAGPGFINVKLSSV 52

Query: 312 YAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEY 369
           Y  +++ +++++G+    P L  K R +VDFSSPNIAKEMHVGHLRSTIIGD ++ ++EY
Sbjct: 53  YIAKRLNELLLHGIDTWAPVLPVK-RAIVDFSSPNIAKEMHVGHLRSTIIGDCLANMIEY 111

Query: 370 LGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIF 428
              +V+R NHVGDWGTQFGMLI +L + FP++       I DLQAFYKESK RFD DE F
Sbjct: 112 CKVEVLRRNHVGDWGTQFGMLIEYLFEMFPNWEDIGDQAIGDLQAFYKESKVRFDADEEF 171

Query: 429 KKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLV 488
           K +A Q VV LQ  D  Y+ AW+++C++SR +FQ++YDRL V+L E+GESFY  ++   +
Sbjct: 172 KAKAQQAVVKLQSGDAKYRAAWKILCNISRNEFQQVYDRLKVSLEEKGESFYNPYIPDAI 231

Query: 489 PYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIV 548
             L  KG+LE  DG  +++  D   IP+  +K DGGF Y ++DLAA+  R+  EK +WI+
Sbjct: 232 QILRDKGILEESDGATVIF-VDGHKIPLIAIKRDGGFNYASTDLAALWYRLNVEKVEWII 290

Query: 549 YVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHD-VVRLNHVGDWGTQFGMLIAHLQDKF 607
           YVTD+GQ  HF +  ++       ++  E+L  +   R  HVG     FG+++     +F
Sbjct: 291 YVTDVGQHQHFDMFFKA-------AKRAEWLPKEGYPRTQHVG-----FGLVLGTDGKRF 338



 Score =  279 bits (714), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 153/339 (45%), Positives = 202/339 (59%), Gaps = 44/339 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGD ++ ++EY   +V+R NHVGDWGTQFGMLI +L + FP++       I DLQAF
Sbjct: 98  STIIGDCLANMIEYCKVEVLRRNHVGDWGTQFGMLIEYLFEMFPNWEDIGDQAIGDLQAF 157

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YKESK RFD DE FK +A Q VV LQ  D  Y+ AW+++C++SR +FQ++YDRL V+L E
Sbjct: 158 YKESKVRFDADEEFKAKAQQAVVKLQSGDAKYRAAWKILCNISRNEFQQVYDRLKVSLEE 217

Query: 684 RGESFYQKHMEQLVPYLEKKG--------------------------------------- 704
           +GESFY  ++   +  L  KG                                       
Sbjct: 218 KGESFYNPYIPDAIQILRDKGILEESDGATVIFVDGHKIPLIAIKRDGGFNYASTDLAAL 277

Query: 705 --NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGIL-NPNKTRMDFVGFGVVLGEDRKK 761
              L++ K   I+YVTD+GQ  HF +  + AK+A  L      R   VGFG+VLG D K+
Sbjct: 278 WYRLNVEKVEWIIYVTDVGQHQHFDMFFKAAKRAEWLPKEGYPRTQHVGFGLVLGTDGKR 337

Query: 762 FKTRSG-DTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH 820
           F+TR G   V+L +LLDE   RS   L ++ R  E +P +L  A ++V YG +KYADL +
Sbjct: 338 FRTRQGTGLVRLVDLLDEAKSRSKTALIERGRDDEWSPEDLDAAAESVGYGAVKYADLKN 397

Query: 821 NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           NR  +Y FSF++MLD RGNTAVYLLYAY RI SI R +G
Sbjct: 398 NRETNYTFSFEQMLDVRGNTAVYLLYAYARIRSIIRKSG 436



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 114/188 (60%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS   L ++ R  E +P +L  A ++V YG +KYADL +NR  +Y FSF++MLD RGNTA
Sbjct: 359  RSKTALIERGRDDEWSPEDLDAAAESVGYGAVKYADLKNNRETNYTFSFEQMLDVRGNTA 418

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYAY RI SI R +G + ++L+   ++  + L H  E AL   L++ ++V+      
Sbjct: 419  VYLLYAYARIRSIIRKSGKSIDELK---ENGAIVLTHPDERALGLFLIQFSEVVEDAVTR 475

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LCEYLY++S  F+ FY +C       E       T RLLL EATA VMK+CF +L
Sbjct: 476  LLPNTLCEYLYNLSENFTRFYTSCKVNGSPEE-------TSRLLLCEATAIVMKQCFKLL 528

Query: 1112 NIRTVHKM 1119
             I  + ++
Sbjct: 529  GITPLERL 536



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 12/99 (12%)

Query: 57  MALCKIFKDK-GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRV 115
           M +    K K  E +NP +IAQSI          N      ++    A PGF+NV LS V
Sbjct: 1   MGIWSTIKGKETEFRNPREIAQSITR--------NFPQTGFVETTSVAGPGFINVKLSSV 52

Query: 116 YAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           Y  +++ +++++G+    P L  K R +VDFSSPNIA++
Sbjct: 53  YIAKRLNELLLHGIDTWAPVLPVK-RAIVDFSSPNIAKE 90


>gi|440533411|emb|CCP58921.1| arginyl-tRNA synthetase [Chlamydia trachomatis Ia/SotonIa1]
 gi|440534305|emb|CCP59815.1| arginyl-tRNA synthetase [Chlamydia trachomatis Ia/SotonIa3]
          Length = 563

 Score =  291 bits (746), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/365 (42%), Positives = 226/365 (61%), Gaps = 27/365 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++       
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVLH----- 54

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---IV 322
           K+P  IA+SI     + +   P        IE+A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPTP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 323 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           NG +  +  K   V++DFSSPNIAK+MHVGHLRSTIIGD ++R   ++GHDV+RLNH+GD
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGD 162

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           WGT FGMLI +LQ+   + + +   + DL A YK++  RF ED  FKKR+   VVALQ  
Sbjct: 163 WGTAFGMLITYLQETSQEAIHQ---LEDLTALYKKAHARFAEDSEFKKRSQHNVVALQSG 219

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           D      W+ IC VS + FQ IY  L+V L  RGESFY   + ++V  LE K L+ L DG
Sbjct: 220 DAQALALWKQICSVSEKSFQTIYSILDVELHTRGESFYNPFLAEVVADLESKNLVTLSDG 279

Query: 503 RKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
            K ++ E   SIP+ + KSDGG+ Y T+D+AA+R RI++++AD I+ VTD GQ +HF+LL
Sbjct: 280 AKCVFHEAF-SIPLMVQKSDGGYNYATTDVAAMRYRIQQDQADRILIVTDSGQSLHFQLL 338

Query: 563 EESTI 567
           E + +
Sbjct: 339 EATCL 343



 Score =  243 bits (621), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 143/347 (41%), Positives = 189/347 (54%), Gaps = 49/347 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R   ++GHDV+RLNH+GDWGT FGMLI +LQ+   + + +   + DL A Y
Sbjct: 136 STIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETSQEAIHQ---LEDLTALY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  D      W+ IC VS + FQ IY  L+V L  R
Sbjct: 193 KKAHARFAEDSEFKKRSQHNVVALQSGDAQALALWKQICSVSEKSFQTIYSILDVELHTR 252

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + ++V  LE K  ++L+     V+                            
Sbjct: 253 GESFYNPFLAEVVADLESKNLVTLSDGAKCVFHEAFSIPLMVQKSDGGYNYATTDVAAMR 312

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD GQ +HF+LLE     AG L P+K     VGFG+VL    +KFK
Sbjct: 313 YRIQQDQADRILIVTDSGQSLHFQLLEATCLAAGYL-PSKGIFSHVGFGLVLDTQGRKFK 371

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + ++ + L  K    +++  EL+     +    IKYADLS +R 
Sbjct: 372 TRSGENIKLRELLDTAVEKAKESL--KAHRPDISEEELAYQGPILGINAIKYADLSSHRI 429

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDP 870
            DYVFSF+KML   GNTA+ LLYAY RI  I R  G+  E PP+  P
Sbjct: 430 NDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGL--ESPPQEGP 474



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 18/196 (9%)

Query: 930  LRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            LR  LD   +K + +      +++  EL+     +    IKYADLS +R  DYVFSF+KM
Sbjct: 380  LRELLDTAVEKAKESLKAHRPDISEEELAYQGPILGINAIKYADLSSHRINDYVFSFEKM 439

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            L   GNTA+ LLYAY RI  I R  G+ S       Q  P+++    E ALA TLLR  +
Sbjct: 440  LRFEGNTAMSLLYAYVRIQGIKRRMGLES-----PPQEGPLAVHEPAEEALALTLLRFPE 494

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
            +L L  R+LC H L +YLY ++  F+ F+ +C+    D++ +       RL L   T + 
Sbjct: 495  ILDLTLRELCPHFLTDYLYALTNKFNAFFRDCHIEGSDSQQE-------RLYLCGLTERT 547

Query: 1104 MKKCFDILNIRTVHKM 1119
            +     +L ++T++ +
Sbjct: 548  LSTGMHLLGLKTLNHL 563



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 23/145 (15%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           ++  +L+ + + A+  AFPEL + T  +  + +++   FG +QCNDAM L ++       
Sbjct: 3   TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVL-----H 54

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---IV 126
           K+P  IA+SI     + +   P        IE A  GF+N   S+ +   Q++     + 
Sbjct: 55  KSPRAIAESI----VAHIPPTP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAR 151
           NG +  +  K   V++DFSSPNIA+
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAK 127


>gi|238008168|gb|ACR35119.1| unknown [Zea mays]
          Length = 390

 Score =  291 bits (746), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/297 (50%), Positives = 201/297 (67%), Gaps = 14/297 (4%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
           KF D+QCN+AM L    K  G   KNP  I Q+IA  + S        + +I+   VA P
Sbjct: 103 KFADYQCNNAMGLWSKVKGSGTSFKNPNAIGQAIAKNLPS--------SDIIESTSVAGP 154

Query: 302 GFVNVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           GFVN+ LS  +  ++I+D++VNG++   P L  K R ++DFSSPNIAKEMHVGHLRSTII
Sbjct: 155 GFVNIVLSNRWVAQRIQDMLVNGIKTWAPILPVK-RAVIDFSSPNIAKEMHVGHLRSTII 213

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKES 418
           GDT++R+ E+   DV+R NHVGDWGTQFGMLI +L +KFP++    S  I DLQ FYK S
Sbjct: 214 GDTLARMFEFSNVDVLRRNHVGDWGTQFGMLIEYLFEKFPNWQEIGSQAIGDLQIFYKAS 273

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES 478
           K RFD D  FK RA Q VV LQ  +  Y++AW+ ICD+SR +F  +Y RLNV L E+GES
Sbjct: 274 KHRFDNDPEFKARAQQGVVRLQGGEERYREAWKKICDISRSEFDLVYKRLNVVLEEKGES 333

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAI 535
           FY  ++ Q++  L  KGL++  +G ++++ +    IP+ +VKSDGGF Y ++DLAA+
Sbjct: 334 FYNPYIPQVLEELSSKGLIKESEGARVIFIQGH-QIPLIVVKSDGGFNYASTDLAAL 389



 Score =  163 bits (412), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 106/154 (68%), Gaps = 1/154 (0%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGDT++R+ E+   DV+R NHVGDWGTQFGMLI +L +KFP++    S  I DLQ F
Sbjct: 210 STIIGDTLARMFEFSNVDVLRRNHVGDWGTQFGMLIEYLFEKFPNWQEIGSQAIGDLQIF 269

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK RFD D  FK RA Q VV LQ  +  Y++AW+ ICD+SR +F  +Y RLNV L E
Sbjct: 270 YKASKHRFDNDPEFKARAQQGVVRLQGGEERYREAWKKICDISRSEFDLVYKRLNVVLEE 329

Query: 684 RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV 717
           +GESFY  ++ Q++  L  KG +  ++   ++++
Sbjct: 330 KGESFYNPYIPQVLEELSSKGLIKESEGARVIFI 363



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 12/109 (11%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
           KF D+QCN+AM L    K  G   KNP  I Q+IA  + S        + +I+    A P
Sbjct: 103 KFADYQCNNAMGLWSKVKGSGTSFKNPNAIGQAIAKNLPS--------SDIIESTSVAGP 154

Query: 106 GFVNVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARK 152
           GFVN+ LS  +  ++++D++VNG++   P L  K R ++DFSSPNIA++
Sbjct: 155 GFVNIVLSNRWVAQRIQDMLVNGIKTWAPILPVK-RAVIDFSSPNIAKE 202


>gi|428219431|ref|YP_007103896.1| arginyl-tRNA synthetase [Pseudanabaena sp. PCC 7367]
 gi|427991213|gb|AFY71468.1| arginyl-tRNA synthetase [Pseudanabaena sp. PCC 7367]
          Length = 588

 Score =  291 bits (745), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/330 (46%), Positives = 212/330 (64%), Gaps = 31/330 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+QCN A+ L K  K K     P DIA        +E+  +  +  + +   +  PG
Sbjct: 39  RFGDYQCNAALGLAKQLKRK-----PRDIA--------TEIVAHLQIDDIGEPASIDGPG 85

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQP------PTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+NV L   Y   Q+  I     QP        L++  R++VDFSSPNIAKEMHVGHLRS
Sbjct: 86  FINVRLKTSYLETQLTTI-----QPDDRLGITKLDRPERIIVDFSSPNIAKEMHVGHLRS 140

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA--DLQAF 414
           TIIGD I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L+  +PD L ++  +A  DL  F
Sbjct: 141 TIIGDCIARILEFQGHDVLRLNHVGDWGTQFGMLITYLKTAYPDALNQADVLALGDLVEF 200

Query: 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 474
           YK +KK+FDED  FK+ A Q VV LQ  D + + AW+++C+ SRR+FQKIYD L++ L E
Sbjct: 201 YKAAKKKFDEDPEFKETARQAVVGLQSGDEEARLAWKLLCEQSRREFQKIYDALDIKLQE 260

Query: 475 RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDT 529
           RGESFY   +  +V  L + GL+E +DG   ++ E   +     +P+ + KS+GG+ Y T
Sbjct: 261 RGESFYNSLLPDVVQDLTQAGLVEENDGALCVFLEGFTNKAGDPLPLIVQKSNGGYNYAT 320

Query: 530 SDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           +DLAA+R RI +++ D I+YVTD GQ  HF
Sbjct: 321 TDLAALRYRINQDQVDRIIYVTDAGQSDHF 350



 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 152/348 (43%), Positives = 198/348 (56%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA--DLQA 622
           STIIGD I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L+  +PD L ++  +A  DL  
Sbjct: 140 STIIGDCIARILEFQGHDVLRLNHVGDWGTQFGMLITYLKTAYPDALNQADVLALGDLVE 199

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK +KK+FDED  FK+ A Q VV LQ  D + + AW+++C+ SRR+FQKIYD L++ L 
Sbjct: 200 FYKAAKKKFDEDPEFKETARQAVVGLQSGDEEARLAWKLLCEQSRREFQKIYDALDIKLQ 259

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L + G +              T K G                 
Sbjct: 260 ERGESFYNSLLPDVVQDLTQAGLVEENDGALCVFLEGFTNKAGDPLPLIVQKSNGGYNYA 319

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + A +AG L P   ++  V FG+VL
Sbjct: 320 TTDLAALRYRINQDQVDRIIYVTDAGQSDHFAQVFQVANRAGWL-PESVKITHVPFGLVL 378

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           GED KK KTRSG+TVKL ELL E + R+   L    R  +       E    +    +KY
Sbjct: 379 GEDGKKLKTRSGETVKLKELLQEAIARANADL--DARDPDYDADYQKEVATTIGLDAVKY 436

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           ADL+ NR  +Y FS+DKML  +GNTA YLLYAY R+  I+R   I+ E
Sbjct: 437 ADLAQNRTSNYAFSYDKMLALQGNTAPYLLYAYVRVRGISRKGDIDFE 484



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 8/154 (5%)

Query: 953  EAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 1012
            E    +    +KYADL+ NR  +Y FS+DKML  +GNTA YLLYAY R+  I+R   I+ 
Sbjct: 424  EVATTIGLDAVKYADLAQNRTSNYAFSYDKMLALQGNTAPYLLYAYVRVRGISRKGDIDF 483

Query: 1013 EDLRVAAQST---PVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFS 1069
            E    A++ T    + L    E  LAK L+++ + +  V  +L  + LC+YL+++S  F+
Sbjct: 484  EQFNHASEQTEPRSIQLTEATEINLAKHLVQLAETIEAVADELMPNRLCQYLFELSQKFN 543

Query: 1070 EFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
            +FYD C  ++   + +       RL L   TAK 
Sbjct: 544  QFYDQCPVLQGSEQERF-----SRLSLCNITAKT 572



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 24/112 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+QCN A+ L K  K K     P DIA  I + +  +    P+    ID      PG
Sbjct: 39  RFGDYQCNAALGLAKQLKRK-----PRDIATEIVAHLQIDDIGEPA---SID-----GPG 85

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQP------PTLNKKLRVLVDFSSPNIARK 152
           F+NV L   Y   Q+  I     QP        L++  R++VDFSSPNIA++
Sbjct: 86  FINVRLKTSYLETQLTTI-----QPDDRLGITKLDRPERIIVDFSSPNIAKE 132


>gi|22298368|ref|NP_681615.1| arginyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|34222744|sp|Q8DKN4.1|SYR_THEEB RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|22294547|dbj|BAC08377.1| arginyl-tRNA-synthetase [Thermosynechococcus elongatus BP-1]
          Length = 584

 Score =  291 bits (744), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 162/361 (44%), Positives = 225/361 (62%), Gaps = 32/361 (8%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           L D    A+Q A P        +   ++    KFGD+Q N  ++L K        K P +
Sbjct: 8   LGDRLRRALQAALPLDTYPQPLLVPASQV---KFGDYQSNVCLSLAKQLG-----KAPRE 59

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNV-----FLSRVYAGEQIKDIIVNGV 325
           +AQ +   +  E    P        +E+A PGF+N      FL+      +  D +  G+
Sbjct: 60  LAQEVVPHLEVEDLCQP--------VEIAGPGFLNFRLKPEFLAATLQAARGSDRL--GI 109

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
            PP    + RV+VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ GH V+RLNHVGDWGT
Sbjct: 110 -PPAREPR-RVVVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFQGHTVLRLNHVGDWGT 167

Query: 386 QFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           QFGMLIA+L + +PD LT +    + DL  FYK++K+RFD D  F+++A   VVALQ+ +
Sbjct: 168 QFGMLIAYLDEVYPDALTTANALDLGDLVTFYKKAKQRFDSDPEFQQKARAKVVALQQGE 227

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
              ++AW+++C+ SRR+FQKIYD L++ LTERGESFY   +  ++  L   GLL  D G 
Sbjct: 228 EQSRRAWQLLCEQSRREFQKIYDLLDIQLTERGESFYNPFLPAVIEDLAACGLLVEDQGA 287

Query: 504 KIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           K+++ E     +    P+ I KSDGG+ Y T+DLAA+R RI++++ADWI+YVTD+GQ  H
Sbjct: 288 KVVFLEGFTNKEGQPQPLIIQKSDGGYNYATTDLAALRYRIDKDQADWIIYVTDVGQSTH 347

Query: 559 F 559
           F
Sbjct: 348 F 348



 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 162/398 (40%), Positives = 224/398 (56%), Gaps = 61/398 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+ GH V+RLNHVGDWGTQFGMLIA+L + +PD LT +  +   DL  
Sbjct: 138 STIIGDCIARILEFQGHTVLRLNHVGDWGTQFGMLIAYLDEVYPDALTTANALDLGDLVT 197

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K+RFD D  F+++A   VVALQ+ +   ++AW+++C+ SRR+FQKIYD L++ LT
Sbjct: 198 FYKKAKQRFDSDPEFQQKARAKVVALQQGEEQSRRAWQLLCEQSRREFQKIYDLLDIQLT 257

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  ++  L   G L              T K G                 
Sbjct: 258 ERGESFYNPFLPAVIEDLAACGLLVEDQGAKVVFLEGFTNKEGQPQPLIIQKSDGGYNYA 317

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD+GQ  HF  + + A++AG + P+ T +  V FG+VL
Sbjct: 318 TTDLAALRYRIDKDQADWIIYVTDVGQSTHFAQVFQVAQRAGWVPPHVT-LTHVPFGLVL 376

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK---NRHTELTPTELSEAQQAVAYGC 812
           GED K+ KTRSG+T++L +LL E + RS   L+ +      TE +P  +    +A+  G 
Sbjct: 377 GEDGKRLKTRSGETIRLIDLLTEAIARSRADLEQRLATEGRTE-SPEFIDTVARAIGIGA 435

Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN--SEDPPEPDP 870
           +KYADLS NRN +YVFS+DKML  +GNTA YLLYAY R+  + R   I+  +  P  P  
Sbjct: 436 VKYADLSQNRNSNYVFSYDKMLSLQGNTAPYLLYAYVRVQGLTRRGDIDWCTLSPDSPLL 495

Query: 871 SQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLC 908
            + E E      H   H        +L+   L  N LC
Sbjct: 496 LEDETE-----QHLAKHLVQLEETLDLVSTELLPNRLC 528



 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 100/173 (57%), Gaps = 8/173 (4%)

Query: 947  TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006
            +P  +    +A+  G +KYADLS NRN +YVFS+DKML  +GNTA YLLYAY R+  + R
Sbjct: 420  SPEFIDTVARAIGIGAVKYADLSQNRNSNYVFSYDKMLSLQGNTAPYLLYAYVRVQGLTR 479

Query: 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST 1066
               I   D    +  +P+ LE E E  LAK L+++ + L LV+ +L  + LC+YL+++S 
Sbjct: 480  RGDI---DWCTLSPDSPLLLEDETEQHLAKHLVQLEETLDLVSTELLPNRLCQYLFELSQ 536

Query: 1067 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             F++FYD C  +      K       RL LA  TA+ +K    +L I  + ++
Sbjct: 537  LFNQFYDRCPILSAPQPTK-----QSRLTLAYLTAQTLKLGLSLLGIPVLDRI 584



 Score = 47.4 bits (111), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 25/143 (17%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           L D    A+Q A P        +   ++    KFGD+Q N  ++L K        K P +
Sbjct: 8   LGDRLRRALQAALPLDTYPQPLLVPASQV---KFGDYQSNVCLSLAKQLG-----KAPRE 59

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNV-----FLSRVYAGEQMKDIIVNGV 129
           +AQ +   +  E    P        +E A PGF+N      FL+      +  D +  G+
Sbjct: 60  LAQEVVPHLEVEDLCQP--------VEIAGPGFLNFRLKPEFLAATLQAARGSDRL--GI 109

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
            PP    + RV+VDFSSPNIA++
Sbjct: 110 -PPAREPR-RVVVDFSSPNIAKE 130


>gi|33239664|ref|NP_874606.1| arginyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|39932096|sp|Q7VE03.1|SYR_PROMA RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|33237189|gb|AAP99258.1| Arginyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 603

 Score =  291 bits (744), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 166/372 (44%), Positives = 231/372 (62%), Gaps = 32/372 (8%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVAS-TNEKYVH----KFGDFQCNDAMALCKIFKDKGEK 265
           L+     A+  AFPE   +        N + V     +FGDFQ N A+AL +I K     
Sbjct: 8   LNQQVQRALNTAFPEAASQVKESGDFLNPQLVAATKPEFGDFQINGALALARIIK----- 62

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK-----DI 320
           K+P    + IA ++  +L +N     +    E+A PGF+N+ L       +I      D+
Sbjct: 63  KSP----RQIAEILIKQLESNEVFKAICLPPEIAGPGFINLTLQNTCLINEITSRLNDDL 118

Query: 321 I-VNGVQPPTLNKKLR-VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
           + V  V    + KKL+ V+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+L Y G+ V+RLN
Sbjct: 119 LGVPLVNDDEITKKLKPVIVDFSSPNIAKEMHVGHLRSTIIGDSIARILNYRGYKVIRLN 178

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCV 436
           HVGDWGTQFGMLI HL++  P  LT +  I   +L  FYK++K+RFDEDE F++ +   V
Sbjct: 179 HVGDWGTQFGMLITHLKEVAPKALTTANVINLGNLVEFYKKAKQRFDEDEYFQQCSRNEV 238

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 496
           V LQR + +  KAWE++C+ SR++F KIYDRL + ++ERGESFY   ++ ++  L + GL
Sbjct: 239 VNLQRGNKESLKAWELLCEQSRKEFNKIYDRLKIEISERGESFYNPFLQGVIDDLTRSGL 298

Query: 497 LELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEK----ADWI 547
           L  DDG K ++     G+D   +P+ I K+DGGF Y T+DLAAIR R++++     A  I
Sbjct: 299 LVEDDGAKCVFLNGINGKDGNPLPLIIQKADGGFNYATTDLAAIRYRLKDQPDGDGAGRI 358

Query: 548 VYVTDLGQGVHF 559
           +YVTD GQ  HF
Sbjct: 359 IYVTDSGQANHF 370



 Score =  252 bits (644), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 148/352 (42%), Positives = 203/352 (57%), Gaps = 60/352 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+I+R+L Y G+ V+RLNHVGDWGTQFGMLI HL++  P  LT +  I   +L  
Sbjct: 156 STIIGDSIARILNYRGYKVIRLNHVGDWGTQFGMLITHLKEVAPKALTTANVINLGNLVE 215

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K+RFDEDE F++ +   VV LQR + +  KAWE++C+ SR++F KIYDRL + ++
Sbjct: 216 FYKKAKQRFDEDEYFQQCSRNEVVNLQRGNKESLKAWELLCEQSRKEFNKIYDRLKIEIS 275

Query: 683 ERGESFYQKHMEQLVPYLEKKG-----------------------------------NLS 707
           ERGESFY   ++ ++  L + G                                   N +
Sbjct: 276 ERGESFYNPFLQGVIDDLTRSGLLVEDDGAKCVFLNGINGKDGNPLPLIIQKADGGFNYA 335

Query: 708 LTKKLGIVY----------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
            T    I Y                VTD GQ  HF  + + AK+A  L P+ +R++ V F
Sbjct: 336 TTDLAAIRYRLKDQPDGDGAGRIIYVTDSGQANHFAGVFQVAKRAKWL-PSSSRIEHVPF 394

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS-LD---KLKDKNRHTELTPTELSEAQQA 807
           G+V GED KK KTRSG+TV+L +LLDE + R+ LD   +L ++NR    +   + +    
Sbjct: 395 GLVQGEDGKKLKTRSGETVRLKDLLDEAISRAKLDIERRLNEENRKE--SQAFIEKVSNT 452

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           +    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA I R  G
Sbjct: 453 IGIAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGINRKGG 504



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 13/184 (7%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +L ++NR    +   + +    +    +KYADLS NR  +Y FSFD+ML  +GNTA YLL
Sbjct: 433  RLNEENRKE--SQAFIEKVSNTIGIAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLL 490

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YA  RIA I R  G    DL  +     ++    +E+ L + LL+ ++V++ V  +L  +
Sbjct: 491  YAVVRIAGINRKGG----DLHSSVNK--LNFSEPQEWRLIRELLKFDEVIIAVEEELLPN 544

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1115
             LC YL+++S  F+ FYD    ++ +   +     + RL L + T   +KK  ++L I T
Sbjct: 545  RLCNYLFELSQVFNRFYDQIPVLKAEEPSR-----SCRLALCQLTGDTLKKGLNLLGIST 599

Query: 1116 VHKM 1119
            + +M
Sbjct: 600  LERM 603



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 21/150 (14%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVAS-TNEKYVH----KFGDFQCNDAMALCKIFKDKGEK 69
           L+     A+  AFPE   +        N + V     +FGDFQ N A+AL +I      K
Sbjct: 8   LNQQVQRALNTAFPEAASQVKESGDFLNPQLVAATKPEFGDFQINGALALARII-----K 62

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK-----DI 124
           K+P    + IA ++  +L +N     +    E A PGF+N+ L       ++      D+
Sbjct: 63  KSP----RQIAEILIKQLESNEVFKAICLPPEIAGPGFINLTLQNTCLINEITSRLNDDL 118

Query: 125 I-VNGVQPPTLNKKLR-VLVDFSSPNIARK 152
           + V  V    + KKL+ V+VDFSSPNIA++
Sbjct: 119 LGVPLVNDDEITKKLKPVIVDFSSPNIAKE 148


>gi|87300835|ref|ZP_01083677.1| arginyl-tRNA synthetase [Synechococcus sp. WH 5701]
 gi|87284706|gb|EAQ76658.1| arginyl-tRNA synthetase [Synechococcus sp. WH 5701]
          Length = 610

 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/335 (45%), Positives = 214/335 (63%), Gaps = 27/335 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGDFQ N A++L +  K            ++IA  +  +LA + +  ++ +  ++A PG
Sbjct: 45  EFGDFQANGALSLARRLKQA---------PRAIAGAIVEQLAVDTAFTELCEPAQIAGPG 95

Query: 303 FVNVFL-SRVYAGEQIKDIIVNGVQPPTLNKKLR------VLVDFSSPNIAKEMHVGHLR 355
           F+N+ L  R  A E    +    +  P ++          V+VDFSSPNIAKEMHVGHLR
Sbjct: 96  FINLTLRPRQLAAELRSRLGDQRLGVPEVSGAATGAAAAPVIVDFSSPNIAKEMHVGHLR 155

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 413
           STIIGD ++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ LT +  +   DL A
Sbjct: 156 STIIGDALARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALTTADAVDLGDLVA 215

Query: 414 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 473
           FY+++K RFD DE F+  + + VV LQ  DP  ++AW+++C+ SRR+FQ+IYDRL++ L+
Sbjct: 216 FYRQAKARFDADEAFQATSREEVVKLQSGDPVSRRAWQLLCEQSRREFQQIYDRLDIRLS 275

Query: 474 ERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYD 528
           ERGESFY  ++EQ+V  LE  GLL  D G + ++     G+D   +P+ + KSDGGF Y 
Sbjct: 276 ERGESFYNPYLEQVVADLEASGLLVTDAGAQCVFLEGVSGKDGQPLPLIVRKSDGGFNYA 335

Query: 529 TSDLAAIRQRI----EEEKADWIVYVTDLGQGVHF 559
           T+DLAA+R R     E + A  ++YVTD GQ  HF
Sbjct: 336 TTDLAALRYRFAAPPEGDGARRLIYVTDAGQASHF 370



 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 151/353 (42%), Positives = 207/353 (58%), Gaps = 56/353 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD ++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ LT +  +   DL A
Sbjct: 156 STIIGDALARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALTTADAVDLGDLVA 215

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K RFD DE F+  + + VV LQ  DP  ++AW+++C+ SRR+FQ+IYDRL++ L+
Sbjct: 216 FYRQAKARFDADEAFQATSREEVVKLQSGDPVSRRAWQLLCEQSRREFQQIYDRLDIRLS 275

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY  ++EQ+V  LE  G L             ++ K G                 
Sbjct: 276 ERGESFYNPYLEQVVADLEASGLLVTDAGAQCVFLEGVSGKDGQPLPLIVRKSDGGFNYA 335

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 ++YVTD GQ  HF  + + A++AG + P   R++ V F
Sbjct: 336 TTDLAALRYRFAAPPEGDGARRLIYVTDAGQASHFAAVFQVARRAGWV-PEGGRLEHVPF 394

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V G+D KK KTRSGDTV+L +LL+E + R+   L+ +    E    E  ++     V 
Sbjct: 395 GLVQGDDGKKLKTRSGDTVRLKDLLEEAVERAEADLRRRLAEEERQEEEEFITHVATTVG 454

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
              +KYADLS NRN +Y FSFD+ML   GNTA YLLYA  RIA IAR  G+ +
Sbjct: 455 LAAVKYADLSTNRNTNYQFSFDRMLALSGNTAPYLLYALVRIAGIARKGGVGA 507



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 90/163 (55%), Gaps = 6/163 (3%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NRN +Y FSFD+ML   GNTA YLLYA  RIA IAR  G+ + +   
Sbjct: 453  VGLAAVKYADLSTNRNTNYQFSFDRMLALSGNTAPYLLYALVRIAGIARKGGVGAGEGDA 512

Query: 1018 AAQ-STPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1076
            A     P+     +E+ALA+ LL ++ V+  V  +L  + LC YL+++S  F+ FYD   
Sbjct: 513  AGVFPDPLVFSEPQEWALARQLLALDTVIAEVEEELLPNRLCSYLFELSQVFNRFYDQVP 572

Query: 1077 CIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             ++ D     +     RL L   TA  ++    +L I T+ +M
Sbjct: 573  VLKAD-----EPARGSRLALCRLTADTLRLGLGLLGIPTLERM 610



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 16/113 (14%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGDFQ N A++L +  K            ++IA  +  +LA + +  ++ +  + A PG
Sbjct: 45  EFGDFQANGALSLARRLKQA---------PRAIAGAIVEQLAVDTAFTELCEPAQIAGPG 95

Query: 107 FVNVFL-SRVYAGEQMKDIIVNGVQPPTLNKKLR------VLVDFSSPNIARK 152
           F+N+ L  R  A E    +    +  P ++          V+VDFSSPNIA++
Sbjct: 96  FINLTLRPRQLAAELRSRLGDQRLGVPEVSGAATGAAAAPVIVDFSSPNIAKE 148


>gi|334120484|ref|ZP_08494564.1| Arginyl-tRNA synthetase [Microcoleus vaginatus FGP-2]
 gi|333456462|gb|EGK85094.1| Arginyl-tRNA synthetase [Microcoleus vaginatus FGP-2]
          Length = 585

 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/366 (44%), Positives = 221/366 (60%), Gaps = 31/366 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           S+   L   F  A   AF E   G      A++N      FGDFQCN AM+L K      
Sbjct: 3   SIAQQLKAKFEKAFTAAFGESYAGADPMLAAASNPN----FGDFQCNAAMSLGKKLG--- 55

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
             K P  IA +I          N  +  + +  E+A PGF+N+ L   Y   QI  I  +
Sbjct: 56  --KPPRAIASTIIE--------NLDITDICETPEIAGPGFINLKLKPAYLEAQISAIAGD 105

Query: 324 ---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
              G++P    +   + +DFSSPNIAKEMHVGHLRSTIIGD I+R LE+ GHDV+R+NH+
Sbjct: 106 SRLGIEPAKTPQT--IAIDFSSPNIAKEMHVGHLRSTIIGDAIARTLEFQGHDVLRINHI 163

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLIA+L++  P+ LT +    + DL AFY+++K+RFD DE FK+ A Q VV 
Sbjct: 164 GDWGTQFGMLIAYLREVHPEALTTADALDLGDLVAFYRQAKQRFDTDETFKETARQEVVK 223

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ    D ++AW+++CD SRR+FQ IYD L++ LTERGESFY   +  +V  L   GLL 
Sbjct: 224 LQAGAEDTRRAWKLLCDQSRREFQVIYDLLDIKLTERGESFYNPLLPAVVEDLTNLGLLV 283

Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
             DG K ++      ++   +P+ + K+DGG+ Y T+DLAA+R RI ++ A  I+YVTD 
Sbjct: 284 ESDGAKCVFVDGFTNKEGEPLPLIVQKTDGGYNYATTDLAAVRYRIHKDNAKRIIYVTDS 343

Query: 554 GQGVHF 559
           GQ  HF
Sbjct: 344 GQANHF 349



 Score =  272 bits (695), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 153/348 (43%), Positives = 204/348 (58%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R LE+ GHDV+R+NH+GDWGTQFGMLIA+L++  P+ LT +  +   DL A
Sbjct: 139 STIIGDAIARTLEFQGHDVLRINHIGDWGTQFGMLIAYLREVHPEALTTADALDLGDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD DE FK+ A Q VV LQ    D ++AW+++CD SRR+FQ IYD L++ LT
Sbjct: 199 FYRQAKQRFDTDETFKETARQEVVKLQAGAEDTRRAWKLLCDQSRREFQVIYDLLDIKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L   G L              T K G                 
Sbjct: 259 ERGESFYNPLLPAVVEDLTNLGLLVESDGAKCVFVDGFTNKEGEPLPLIVQKTDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  +   A+KAG + P    +  + FG+VL
Sbjct: 319 TTDLAAVRYRIHKDNAKRIIYVTDSGQANHFAQVFAVARKAGWI-PEDVEIVHIPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLDE + R+   L+D+ +  E   TE  ++   + V    +
Sbjct: 378 GEDGKKLKTRSGETVRLQDLLDEAIVRTRQDLEDRLKTEERQETEEFIANVSRTVGLSAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  +Y+FS+DKML  +GNTA Y+LYAY R+  I R   IN
Sbjct: 438 KYADLSQNRASNYIFSYDKMLALQGNTAPYMLYAYVRVQGIRRKGEIN 485



 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 115/190 (60%), Gaps = 10/190 (5%)

Query: 932  RSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            R+   L+D+ +  E   TE  ++   + V    +KYADLS NR  +Y+FS+DKML  +GN
Sbjct: 404  RTRQDLEDRLKTEERQETEEFIANVSRTVGLSAVKYADLSQNRASNYIFSYDKMLALQGN 463

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA Y+LYAY R+  I R   IN ++L   A+   V L+ + E  LAK LL++N+V+  V 
Sbjct: 464  TAPYMLYAYVRVQGIRRKGEINFDNLDAGAK---VILQSDAELVLAKHLLQLNEVVNAVG 520

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             DL  + +C+YL+++S  F++F++ C  ++ +     + + T RL+L + TA+ +K   +
Sbjct: 521  GDLLPNRICQYLFELSQKFNQFFEQCQVLKAE-----EPLRTSRLILCDLTARTLKLGLE 575

Query: 1110 ILNIRTVHKM 1119
            +L I+ + +M
Sbjct: 576  LLGIKVLERM 585



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 77/177 (43%), Gaps = 30/177 (16%)

Query: 10  SVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           S+   L   F  A   AF E   G      A++N      FGDFQCN AM+L K      
Sbjct: 3   SIAQQLKAKFEKAFTAAFGESYAGADPMLAAASNPN----FGDFQCNAAMSLGKKL---- 54

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
             K P  IA +I          N  +  + +  E A PGF+N+ L   Y   Q+  I  +
Sbjct: 55  -GKPPRAIASTIIE--------NLDITDICETPEIAGPGFINLKLKPAYLEAQISAIAGD 105

Query: 128 ---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQG 181
              G++P    +   + +DFSSPNIA++      HL S I    I  AIA   + QG
Sbjct: 106 SRLGIEPAKTPQT--IAIDFSSPNIAKE--MHVGHLRSTI----IGDAIARTLEFQG 154


>gi|78213959|ref|YP_382738.1| arginyl-tRNA synthetase [Synechococcus sp. CC9605]
 gi|109895048|sp|Q3AGU9.1|SYR_SYNSC RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|78198418|gb|ABB36183.1| arginyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 590

 Score =  290 bits (742), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 164/370 (44%), Positives = 222/370 (60%), Gaps = 29/370 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           +S+   L      A+Q AFPE     D   + AS  E     FGDFQ N A+ L K  K 
Sbjct: 2   LSLSQSLDAQLRAAMQRAFPEADAGLDPQLASASKQE-----FGDFQANGALPLAKPLKQ 56

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL-SRVYAGEQIKDI 320
                      + IA+ +  +L  +P+   +  + ++A PGF+N+ +     A E    +
Sbjct: 57  A---------PRQIATAIVEQLQADPAFTDLCLEPQIAGPGFINLTIRPERLAAEVSARL 107

Query: 321 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
               +  P ++    V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLNHV
Sbjct: 108 GDERLGVPAVSNAAPVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHPVLRLNHV 167

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLI HL+   P+ L  +  +   DL AFY+E+KKRFD+DE F+  +   VV 
Sbjct: 168 GDWGTQFGMLITHLKQVAPEALDTADAVDLGDLVAFYREAKKRFDDDEAFQSTSRDEVVK 227

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+ERGESFY   +  ++  L+   LL 
Sbjct: 228 LQGGDPVSLKAWGLLCDQSRREFQKIYDRLDILLSERGESFYNPFLPAVIDGLKAAELLV 287

Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI----EEEKADWIVY 549
            DDG + ++     G+D   +P+ + KSDGGF Y T+DLAAIR R     E + A  +VY
Sbjct: 288 TDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYATTDLAAIRYRFGAAPEGDGARRVVY 347

Query: 550 VTDLGQGVHF 559
           VTD GQ  HF
Sbjct: 348 VTDAGQANHF 357



 Score =  262 bits (670), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 150/350 (42%), Positives = 205/350 (58%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL A
Sbjct: 143 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALDTADAVDLGDLVA 202

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFD+DE F+  +   VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+
Sbjct: 203 FYREAKKRFDDDEAFQSTSRDEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDILLS 262

Query: 683 ERGESFYQKHMEQLV-------------------------------PYLEKKGN------ 705
           ERGESFY   +  ++                               P + +K +      
Sbjct: 263 ERGESFYNPFLPAVIDGLKAAELLVTDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYA 322

Query: 706 ----LSLTKKLG----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                ++  + G          +VYVTD GQ  HF  + + A++AG + P+  R++ V F
Sbjct: 323 TTDLAAIRYRFGAAPEGDGARRVVYVTDAGQANHFAGVFQVAERAGWI-PDGARLEHVPF 381

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L +LLDE + R+   L+ + +  E + +E  +      V 
Sbjct: 382 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERAETDLRSRLKEEERSESEEFIQHVAGTVG 441

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 442 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 491



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 89/162 (54%), Gaps = 11/162 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G    DL  
Sbjct: 440  VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DL-- 493

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
            AA +  +     +E+AL + LL+ + V+  V  +L  + LC YL+++S  F+ FYD    
Sbjct: 494  AATNAQLQFSEPQEWALVRELLKFDAVIAEVEEELLPNRLCSYLFELSQVFNRFYDQVPV 553

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ D E         RL L   TA  ++    +L I T+ +M
Sbjct: 554  LKADPE-----ALASRLALCRLTADTLRLGLGLLGIATLDRM 590



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           +S+   L      A+Q AFPE     D   + AS  E     FGDFQ N A+ L K  K 
Sbjct: 2   LSLSQSLDAQLRAAMQRAFPEADAGLDPQLASASKQE-----FGDFQANGALPLAKPLKQ 56

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-SRVYAGEQMKDI 124
                      + IA+ +  +L  +P+   +  + + A PGF+N+ +     A E    +
Sbjct: 57  A---------PRQIATAIVEQLQADPAFTDLCLEPQIAGPGFINLTIRPERLAAEVSARL 107

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
               +  P ++    V+VDFSSPNIA++
Sbjct: 108 GDERLGVPAVSNAAPVVVDFSSPNIAKE 135


>gi|428314402|ref|YP_007125379.1| arginyl-tRNA synthetase [Microcoleus sp. PCC 7113]
 gi|428256014|gb|AFZ21973.1| arginyl-tRNA synthetase [Microcoleus sp. PCC 7113]
          Length = 595

 Score =  290 bits (742), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 209/579 (36%), Positives = 317/579 (54%), Gaps = 87/579 (15%)

Query: 206 SVRDYLSDVFTHAVQVAFPEL--GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           S+ + L + FTHA+  AF     G     V ++N +    FGD+Q N A++L K  +   
Sbjct: 13  SLIEQLRNKFTHALTTAFGSAVEGIDPIVVPASNPQ----FGDYQSNIALSLSKPLR--- 65

Query: 264 EKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV 322
             + P  IA+ I   +  S +   P+         +A PGF+N+ L   Y   Q+  I  
Sbjct: 66  --QQPRAIAEQIVQHLDVSGICQTPT---------IAGPGFINLRLEPAYLEAQLSAIQT 114

Query: 323 N---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
           +   GV+  ++    R++VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GHDV+RLNH
Sbjct: 115 DPRLGVE--SIKTPQRIIVDFSSPNIAKEMHVGHLRSTIIGDSLARILEFQGHDVLRLNH 172

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           VGDWGTQFGMLIA+L+  +P  LT S    + DL  FY+++K+RFD DE F++ A + VV
Sbjct: 173 VGDWGTQFGMLIAYLRVTYPSALTTSNALDLGDLVTFYRKAKQRFDGDEEFQETARKEVV 232

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
            LQ    D ++AW+++C+ SRR+F+ IYD L++ LTERGESFY   +  +V  LE+ GLL
Sbjct: 233 KLQSGAEDSRQAWQLLCEQSRREFEVIYDLLDIHLTERGESFYNPLLPDVVKDLEESGLL 292

Query: 498 ELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
             D G + ++ E     +   +P+ + KSDGG+ Y T+DLAAIR RIE+++A  I+YVTD
Sbjct: 293 VEDTGAQCVFLEGFTNKEGQPLPLIVQKSDGGYNYATTDLAAIRYRIEQDRAVRIIYVTD 352

Query: 553 LGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHV------GDWG----TQFGMLIAH 602
            GQ  HF  + +       ++R   +L ++ V++ HV      G+ G    T+ G  I  
Sbjct: 353 AGQANHFAQVFQ-------VARRAGWLTNE-VQVVHVPFGLVQGEDGKKLKTRSGETI-R 403

Query: 603 LQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCV----------------- 645
           L+D   + + ++   ADL+A  K+  +  +E E FK    Q +                 
Sbjct: 404 LRDLLDEAIARAR--ADLEARLKDEGR--EETEEFKTHVAQIIGLSAVKYADLSQNRNSN 459

Query: 646 --------VALQ-RFDPDYKKAWEMICDVSRR---DFQKIYDRLNVTLTERGESFYQKHM 693
                   ++LQ    P    A+  I  +SR+   +F ++ + + V L E  E    KH+
Sbjct: 460 YIFSFNKMLSLQGNTAPYLLYAYARIQSISRKGNINFDEMGNNIKVLLQEEAELVLGKHL 519

Query: 694 EQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEEC 732
            QL   L +     L  +L   Y+ +L Q  + +  E+C
Sbjct: 520 LQLSEVLRELERDLLPNRL-CQYLYELSQKFN-QFFEQC 556



 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 155/350 (44%), Positives = 210/350 (60%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L+  +P  LT S  +   DL  
Sbjct: 149 STIIGDSLARILEFQGHDVLRLNHVGDWGTQFGMLIAYLRVTYPSALTTSNALDLGDLVT 208

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD DE F++ A + VV LQ    D ++AW+++C+ SRR+F+ IYD L++ LT
Sbjct: 209 FYRKAKQRFDGDEEFQETARKEVVKLQSGAEDSRQAWQLLCEQSRREFEVIYDLLDIHLT 268

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  LE+ G L              T K G                 
Sbjct: 269 ERGESFYNPLLPDVVKDLEESGLLVEDTGAQCVFLEGFTNKEGQPLPLIVQKSDGGYNYA 328

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + A++AG L  N+ ++  V FG+V 
Sbjct: 329 TTDLAAIRYRIEQDRAVRIIYVTDAGQANHFAQVFQVARRAGWLT-NEVQVVHVPFGLVQ 387

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLD----KLKDKNRHTELTPTELSEAQQAVAYG 811
           GED KK KTRSG+T++L +LLDE + R+      +LKD+ R  E T    +   Q +   
Sbjct: 388 GEDGKKLKTRSGETIRLRDLLDEAIARARADLEARLKDEGR--EETEEFKTHVAQIIGLS 445

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            +KYADLS NRN +Y+FSF+KML  +GNTA YLLYAY RI SI+R   IN
Sbjct: 446 AVKYADLSQNRNSNYIFSFNKMLSLQGNTAPYLLYAYARIQSISRKGNIN 495



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 110/184 (59%), Gaps = 10/184 (5%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +LKD+ R  E T    +   Q +    +KYADLS NRN +Y+FSF+KML  +GNTA YLL
Sbjct: 422  RLKDEGR--EETEEFKTHVAQIIGLSAVKYADLSQNRNSNYIFSFNKMLSLQGNTAPYLL 479

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YAY RI SI+R   IN +++     +  V L+ E E  L K LL++++VL  + RDL  +
Sbjct: 480  YAYARIQSISRKGNINFDEM---GNNIKVLLQEEAELVLGKHLLQLSEVLRELERDLLPN 536

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1115
             LC+YLY++S  F++F++ C  +  +     + V T RL+L   TAK +K    +L I  
Sbjct: 537  RLCQYLYELSQKFNQFFEQCPVLWSE-----EPVRTSRLVLCNLTAKTLKLGLSLLGIGV 591

Query: 1116 VHKM 1119
            + +M
Sbjct: 592  LERM 595



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 26/149 (17%)

Query: 10  SVRDYLSDVFTHAVQVAFPEL--GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           S+ + L + FTHA+  AF     G     V ++N +    FGD+Q N A++L K  +   
Sbjct: 13  SLIEQLRNKFTHALTTAFGSAVEGIDPIVVPASNPQ----FGDYQSNIALSLSKPLR--- 65

Query: 68  EKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
             + P  IA+ I   +  S +   P++A          PGF+N+ L   Y   Q+  I  
Sbjct: 66  --QQPRAIAEQIVQHLDVSGICQTPTIAG---------PGFINLRLEPAYLEAQLSAIQT 114

Query: 127 N---GVQPPTLNKKLRVLVDFSSPNIARK 152
           +   GV+  ++    R++VDFSSPNIA++
Sbjct: 115 DPRLGVE--SIKTPQRIIVDFSSPNIAKE 141


>gi|218440177|ref|YP_002378506.1| arginyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|226701373|sp|B7KCT7.1|SYR_CYAP7 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|218172905|gb|ACK71638.1| arginyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 585

 Score =  290 bits (742), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 303/541 (56%), Gaps = 69/541 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPE-LGD-KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 262
           +S+ + L   F  A++ AF +   D +   V +TN K    FGD+Q N A++L K  K  
Sbjct: 2   ISLIEQLKTRFIQALKTAFDQDFSDLEGLVVPATNPK----FGDYQSNVALSLAKPLK-- 55

Query: 263 GEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEVAKPGFVNV-----FLSRVYAGEQ 316
              + P  IA+ I   +  S+L   P         ++A  GF+N+     FL  + A  Q
Sbjct: 56  ---QPPRTIAEQIIKALDISDLCEPP---------QIAGAGFINLTLKANFLENLLAKIQ 103

Query: 317 IKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 376
            KD  + GV+  +     RV+VDFSSPNIAKEMHVGHLRSTI+GD I+R+LE+ GHDV+R
Sbjct: 104 -KDSRL-GVEKAS--PSARVIVDFSSPNIAKEMHVGHLRSTILGDCIARVLEFRGHDVLR 159

Query: 377 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQ 434
           LNHVGDWGTQFGMLIA+L++ +P+ LT +    + DL AFYK++K RFDEDE FK+ A +
Sbjct: 160 LNHVGDWGTQFGMLIAYLREVYPEALTTADALNLGDLVAFYKKAKVRFDEDETFKETARK 219

Query: 435 CVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKK 494
            VV LQ    D + AW+++CD SRR+FQ IY+ L+V LTERGESFY   + ++V  L+++
Sbjct: 220 EVVKLQAGAKDTRHAWQLLCDQSRREFQVIYNILDVNLTERGESFYNPLLPEIVGQLDEE 279

Query: 495 GLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
           GLL  D G K ++ E     +   +P+ + KSD G+ Y T+DLAA++ RI+E+KA+ I+Y
Sbjct: 280 GLLTEDQGAKCVFLEGFTNKEGNPLPLIVQKSDEGYNYATTDLAALKYRIKEDKAERIIY 339

Query: 550 VTDLGQGVH----FRLLEESTIIGDTI--------------SRLLEYLGHDVVRLNHVGD 591
           VTD GQ  H    F++ +++ II + I               + L+    D ++L  + D
Sbjct: 340 VTDAGQANHFAQVFQVAKKAGIIPENIEVVHVAFGVVKGEDGKKLKTRSGDTIKLKDLID 399

Query: 592 WGTQFG------MLIAHLQDKFPDYLTKSPPIADLQAF-YKESKKRFDEDEIFKKRAYQC 644
               +        L    + +  D++     +  + A  Y +  +    D +F   +Y  
Sbjct: 400 EAVAYARRDLEKRLAEDDRKESKDFINHVSQVVGISAIKYADLSQNRISDYVF---SYDK 456

Query: 645 VVALQRFDPDYK-KAWEMICDVSRR---DFQKIYDRLNVTLTERGESFYQKHMEQLVPYL 700
           ++ALQ     Y   A+  I  +SR    DF+K+ ++  V L+E  E    K++ Q    +
Sbjct: 457 MLALQGNTAPYMLYAYARIQSISREGNIDFEKLDEKAKVILSEETELALGKYLLQFTEVI 516

Query: 701 E 701
           E
Sbjct: 517 E 517



 Score =  282 bits (721), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 163/351 (46%), Positives = 213/351 (60%), Gaps = 54/351 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STI+GD I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P+ LT +  +   DL A
Sbjct: 139 STILGDCIARVLEFRGHDVLRLNHVGDWGTQFGMLIAYLREVYPEALTTADALNLGDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K RFDEDE FK+ A + VV LQ    D + AW+++CD SRR+FQ IY+ L+V LT
Sbjct: 199 FYKKAKVRFDEDETFKETARKEVVKLQAGAKDTRHAWQLLCDQSRREFQVIYNILDVNLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG----------------- 713
           ERGESFY   + ++V  L+++G L+             T K G                 
Sbjct: 259 ERGESFYNPLLPEIVGQLDEEGLLTEDQGAKCVFLEGFTNKEGNPLPLIVQKSDEGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + AKKAGI+ P    +  V FGVV 
Sbjct: 319 TTDLAALKYRIKEDKAERIIYVTDAGQANHFAQVFQVAKKAGII-PENIEVVHVAFGVVK 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGL---RRSLDKLKDKNRHTELTPTELSEAQQAVAYGC 812
           GED KK KTRSGDT+KL +L+DE +   RR L+K   ++   E +   ++   Q V    
Sbjct: 378 GEDGKKLKTRSGDTIKLKDLIDEAVAYARRDLEKRLAEDDRKE-SKDFINHVSQVVGISA 436

Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           IKYADLS NR  DYVFS+DKML  +GNTA Y+LYAY RI SI+R   I+ E
Sbjct: 437 IKYADLSQNRISDYVFSYDKMLALQGNTAPYMLYAYARIQSISREGNIDFE 487



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   Q V    IKYADLS NR  DYVFS+DKML  +GNTA Y+LYAY RI SI+R   I
Sbjct: 425  INHVSQVVGISAIKYADLSQNRISDYVFSYDKMLALQGNTAPYMLYAYARIQSISREGNI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            + E L   A+   V L  E E AL K LL+  +V+  V  +L  + LCEYLY++S  F++
Sbjct: 485  DFEKLDEKAK---VILSEETELALGKYLLQFTEVIEDVEINLLPNRLCEYLYELSKKFNK 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  ++  +E  IK   T RL+L + TA+ +K    +L I  V +M
Sbjct: 542  FYENCPVLK--SEDPIK---TSRLILCDLTARTLKLGLSLLGIAVVERM 585



 Score = 45.4 bits (106), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 30/152 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPE-LGD-KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           +S+ + L   F  A++ AF +   D +   V +TN K    FGD+Q N A++L K  K  
Sbjct: 2   ISLIEQLKTRFIQALKTAFDQDFSDLEGLVVPATNPK----FGDYQSNVALSLAKPLK-- 55

Query: 67  GEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEAAKPGFVNV-----FLSRVYAGEQ 120
              + P  IA+ I   +  S+L   P +A           GF+N+     FL  + A  Q
Sbjct: 56  ---QPPRTIAEQIIKALDISDLCEPPQIAGA---------GFINLTLKANFLENLLAKIQ 103

Query: 121 MKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
               +  GV+  +     RV+VDFSSPNIA++
Sbjct: 104 KDSRL--GVEKAS--PSARVIVDFSSPNIAKE 131


>gi|427721165|ref|YP_007069159.1| arginyl-tRNA synthetase [Calothrix sp. PCC 7507]
 gi|427353601|gb|AFY36325.1| arginyl-tRNA synthetase [Calothrix sp. PCC 7507]
          Length = 585

 Score =  290 bits (741), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 157/327 (48%), Positives = 218/327 (66%), Gaps = 25/327 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N A++L K      +   P    ++IAS +  +L     ++++ +  E+A PG
Sbjct: 38  KFGDYQANVALSLSK-----RQGLQP----RAIASTIVEKL----DVSEICEPPEIAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L  VY   Q+  I ++   GV  PT     R +VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85  FINLKLKPVYLEAQLTSIQIDPRLGV--PTAKTPQREIVDFSSPNIAKEMHVGHLRSTII 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKE 417
           GD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P  LT +    I DL +FY++
Sbjct: 143 GDSIARILEFRGHDVLRLNHVGDWGTQFGMLIAYLREVYPQALTTANALDIGDLVSFYRK 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +K+RFD DE F++ A Q VV LQ    D   AW+M+C+ SRR+FQ IYD L+V LTERGE
Sbjct: 203 AKQRFDADETFQETARQEVVRLQAGAQDTIHAWKMLCEQSRREFQIIYDLLDVKLTERGE 262

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           SFY   +  +V  L K GLL  + G + ++ E     +   +P+ + KSDGG+ Y T+DL
Sbjct: 263 SFYNPLLPGIVEDLAKSGLLVENQGAQCVFLEGFTNREGEPLPLIVQKSDGGYNYATTDL 322

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
           A++R RI++++A  I+YVTD GQ  HF
Sbjct: 323 ASLRYRIQQDEAKRIIYVTDTGQANHF 349



 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/350 (45%), Positives = 209/350 (59%), Gaps = 52/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P  LT +    I DL +
Sbjct: 139 STIIGDSIARILEFRGHDVLRLNHVGDWGTQFGMLIAYLREVYPQALTTANALDIGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD DE F++ A Q VV LQ    D   AW+M+C+ SRR+FQ IYD L+V LT
Sbjct: 199 FYRKAKQRFDADETFQETARQEVVRLQAGAQDTIHAWKMLCEQSRREFQIIYDLLDVKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L K G L              T + G                 
Sbjct: 259 ERGESFYNPLLPGIVEDLAKSGLLVENQGAQCVFLEGFTNREGEPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF    + A+KAG + P    +  V FG+VL
Sbjct: 319 TTDLASLRYRIQQDEAKRIIYVTDTGQANHFAQFFQVARKAGWI-PEDVELVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KKFKTRSGDTV+L +LLDE + R+   L+++ +  E T TE  ++ A + +    +
Sbjct: 378 GEDGKKFKTRSGDTVRLRDLLDEAIVRARADLENRLQEYERTETEEFIAHASEVIGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NR  +Y+FS+DKML  +GNTA Y+LYAY R   I+R   I+ E
Sbjct: 438 KYADLSQNRTSNYIFSYDKMLSLKGNTAPYMLYAYVRTQGISREGNIDFE 487



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 114/190 (60%), Gaps = 10/190 (5%)

Query: 932  RSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            R+   L+++ +  E T TE  ++ A + +    +KYADLS NR  +Y+FS+DKML  +GN
Sbjct: 404  RARADLENRLQEYERTETEEFIAHASEVIGISAVKYADLSQNRTSNYIFSYDKMLSLKGN 463

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA Y+LYAY R   I+R   I+ E +     +T + LE + E  LAK LL++++V+  V 
Sbjct: 464  TAPYMLYAYVRTQGISREGNIDFEQM---GANTKILLETDTELTLAKHLLQLSEVIADVE 520

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
            +DL  + LCEYLY +S  F++FY+NC  ++ +     + V T RL L   TA+ +K    
Sbjct: 521  QDLLPNRLCEYLYQLSDKFNKFYENCPVLQSE-----EPVRTSRLALCNLTARTLKLGLS 575

Query: 1110 ILNIRTVHKM 1119
            +L I+ + +M
Sbjct: 576  LLGIQVLERM 585



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 18/109 (16%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q N A++L K      +   P    ++IAS +  +L     ++++ +  E A PG
Sbjct: 38  KFGDYQANVALSLSK-----RQGLQP----RAIASTIVEKL----DVSEICEPPEIAGPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L  VY   Q+  I ++   GV  PT     R +VDFSSPNIA++
Sbjct: 85  FINLKLKPVYLEAQLTSIQIDPRLGV--PTAKTPQREIVDFSSPNIAKE 131


>gi|257058437|ref|YP_003136325.1| arginyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|256588603|gb|ACU99489.1| arginyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 585

 Score =  290 bits (741), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 164/368 (44%), Positives = 227/368 (61%), Gaps = 35/368 (9%)

Query: 206 SVRDYLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           S+ + L++ F+ A+  AF  E  D    V   +     KFGD+Q N A++L K     GE
Sbjct: 3   SINEQLTNYFSQALVKAFGAEFSDIDPIVVPASNP---KFGDYQANIALSLAKKL---GE 56

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK------ 318
           +  P  IAQ I          N SL  + +   +A PGF+N+ +   Y   Q+K      
Sbjct: 57  Q--PRAIAQKIID--------NLSLEDLGELPTIAGPGFINIKIKPTYLATQLKVQQNSS 106

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + V    P       +++VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE  GH V+RLN
Sbjct: 107 SLGVTKADPIE-----KIIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEVRGHQVLRLN 161

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCV 436
           HVGDWGTQFGMLIA+L + +PD LT +    I DL  FYK++KKRFDEDE F++ A   V
Sbjct: 162 HVGDWGTQFGMLIAYLAEVYPDALTTADALDIGDLVTFYKQAKKRFDEDEKFQETARNQV 221

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 496
           V LQ  D   + AW+++C+ SRR+FQ IYD L++ +TERGESFY   +E +V  L+ +GL
Sbjct: 222 VKLQAGDSQTRHAWQLLCEQSRREFQVIYDILDINITERGESFYNPLLEDIVKELDHQGL 281

Query: 497 LELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT 551
           L+ D G + ++      +    +P+ + KSDGG+ Y T+DLAA++ RI +++A+ I+YVT
Sbjct: 282 LKKDAGAQCVFLDGFTNKSGDPLPLIVQKSDGGYNYATTDLAALKYRITQDQAERIIYVT 341

Query: 552 DLGQGVHF 559
           D GQ  HF
Sbjct: 342 DAGQANHF 349



 Score =  273 bits (699), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 161/359 (44%), Positives = 208/359 (57%), Gaps = 60/359 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP- 616
           H R    STIIGD I+R+LE  GH V+RLNHVGDWGTQFGMLIA+L + +PD LT +   
Sbjct: 136 HLR----STIIGDCIARILEVRGHQVLRLNHVGDWGTQFGMLIAYLAEVYPDALTTADAL 191

Query: 617 -IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
            I DL  FYK++KKRFDEDE F++ A   VV LQ  D   + AW+++C+ SRR+FQ IYD
Sbjct: 192 DIGDLVTFYKQAKKRFDEDEKFQETARNQVVKLQAGDSQTRHAWQLLCEQSRREFQVIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------- 713
            L++ +TERGESFY   +E +V  L+ +G L              T K G          
Sbjct: 252 ILDINITERGESFYNPLLEDIVKELDHQGLLKKDAGAQCVFLDGFTNKSGDPLPLIVQKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKA I+ P    +  
Sbjct: 312 DGGYNYATTDLAALKYRITQDQAERIIYVTDAGQANHFAQVFQVAKKAHII-PKNVEIIH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL---RRSLDK-LKDKNRHTELTPTELSEA 804
           V FG+V GED KK KTRSG T+KL +LLDE +   R+ L+K L ++ R    +   ++  
Sbjct: 371 VPFGLVKGEDGKKLKTRSGTTIKLRDLLDEAVIYARQDLEKRLAEEGRQE--SEDFIANV 428

Query: 805 QQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            Q V    +KYADLS NR  DY+FS+DKML  +GNTA Y+LYAY RI SI+R   I+ E
Sbjct: 429 SQVVGISAVKYADLSQNRTSDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNIDFE 487



 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 103/169 (60%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   Q V    +KYADLS NR  DY+FS+DKML  +GNTA Y+LYAY RI SI+R   I
Sbjct: 425  IANVSQVVGISAVKYADLSQNRTSDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            + E L+   Q   + L+ E E  L K LL++++V+  V + L  + LC+YLY++S  F+ 
Sbjct: 485  DFESLQ---QEAKIILQEETEIELGKYLLQLSEVIEEVEKTLLPNRLCDYLYELSKKFNR 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  ++ +     + + T RLLL + TA+ +K    +L I  + +M
Sbjct: 542  FYENCPVLKSE-----EPLRTSRLLLCDLTARTLKLGLSLLGIPVLERM 585



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 30/151 (19%)

Query: 10  SVRDYLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           S+ + L++ F+ A+  AF  E  D    V   +     KFGD+Q N A++L K     GE
Sbjct: 3   SINEQLTNYFSQALVKAFGAEFSDIDPIVVPASNP---KFGDYQANIALSLAKKL---GE 56

Query: 69  KKNPFDIAQSIASVVTSE-LATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK----- 122
           +  P  IAQ I   ++ E L   P++A          PGF+N+ +   Y   Q+K     
Sbjct: 57  Q--PRAIAQKIIDNLSLEDLGELPTIAG---------PGFINIKIKPTYLATQLKVQQNS 105

Query: 123 -DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             + V    P       +++VDFSSPNIA++
Sbjct: 106 SSLGVTKADPIE-----KIIVDFSSPNIAKE 131


>gi|352095553|ref|ZP_08956567.1| Arginyl-tRNA synthetase [Synechococcus sp. WH 8016]
 gi|351678695|gb|EHA61840.1| Arginyl-tRNA synthetase [Synechococcus sp. WH 8016]
          Length = 590

 Score =  290 bits (741), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 163/370 (44%), Positives = 223/370 (60%), Gaps = 29/370 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPE---LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           + +   L      A+Q AFPE   L D   + AS  E     FGDFQ N A+ L K  K 
Sbjct: 2   LRIAQALDTQLREAMQRAFPEVDALLDPQLAPASKPE-----FGDFQANGALPLAKPLKQ 56

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL-SRVYAGEQIKDI 320
                      + IA  +   L  +P+   +  + ++A PGF+N+ +     A E    +
Sbjct: 57  A---------PRQIAGAIVEALQADPAFTALCLEPQIAGPGFINLTIRPECLAAEVSARL 107

Query: 321 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
               +  P ++    V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLNHV
Sbjct: 108 GDPRLGVPEVHNDSAVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHRVLRLNHV 167

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLI HL+   P+ L  +  +   DL AFY+E+KKRFDEDE F+  + + VV 
Sbjct: 168 GDWGTQFGMLITHLKQVAPETLNTADAVDLGDLVAFYREAKKRFDEDEAFQTTSREEVVK 227

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+ERGESFY  ++  ++  L++  LL 
Sbjct: 228 LQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLSERGESFYNPYLASVLSGLKEAVLLV 287

Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI----EEEKADWIVY 549
            DDG + ++     G+D   +P+ + KSDGGF Y T+DLAAIR R     + + A  ++Y
Sbjct: 288 TDDGAECVFLEGVNGKDGKPLPVIVRKSDGGFNYATTDLAAIRYRFAGGSDGDGARRVIY 347

Query: 550 VTDLGQGVHF 559
           VTD GQ  HF
Sbjct: 348 VTDAGQANHF 357



 Score =  265 bits (677), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/350 (43%), Positives = 201/350 (57%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL A
Sbjct: 143 STIIGDSLARVLEFRGHRVLRLNHVGDWGTQFGMLITHLKQVAPETLNTADAVDLGDLVA 202

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFDEDE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+
Sbjct: 203 FYREAKKRFDEDEAFQTTSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLS 262

Query: 683 ERGESFYQKHMEQL-------------------------------VPYLEKKG----NLS 707
           ERGESFY  ++  +                               +P + +K     N +
Sbjct: 263 ERGESFYNPYLASVLSGLKEAVLLVTDDGAECVFLEGVNGKDGKPLPVIVRKSDGGFNYA 322

Query: 708 LTKKLGI----------------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
            T    I                +YVTD GQ  HF  + + AK+A  + P   R++ V F
Sbjct: 323 TTDLAAIRYRFAGGSDGDGARRVIYVTDAGQANHFAGVFQVAKRANWI-PEDGRLEHVPF 381

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTRSGDTV+L +LLDE + R+   L+ + +  E    E  +      V 
Sbjct: 382 GLVQGEDGKKLKTRSGDTVRLRDLLDEAVERAEADLRRRLQEEERHEDEPFIRHVASTVG 441

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 442 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 491



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 105/190 (55%), Gaps = 16/190 (8%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            LRR   +L+++ RH E  P  +      V    +KYADLS NR  +Y FSFD+ML  +GN
Sbjct: 417  LRR---RLQEEERH-EDEPF-IRHVASTVGLAAVKYADLSQNRITNYQFSFDRMLALQGN 471

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA YLLYA  RIA IAR  G    DL   A++  +     +E+AL + LL+ + V+  V 
Sbjct: 472  TAPYLLYAVVRIAGIARKGG----DLE--AEAGMLQFSEPQEWALVRELLKFDAVIAEVE 525

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             +L  + LC YL+++S  F+ FYD    ++  AEGK     + RL L   TA  +K    
Sbjct: 526  EELLPNRLCSYLFELSQVFNRFYDQVPVLK--AEGK---SLSSRLALCRLTADTLKVGLG 580

Query: 1110 ILNIRTVHKM 1119
            +L I T+ +M
Sbjct: 581  LLGIATLERM 590



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 18/148 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPE---LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           + +   L      A+Q AFPE   L D   + AS  E     FGDFQ N A+ L K  K 
Sbjct: 2   LRIAQALDTQLREAMQRAFPEVDALLDPQLAPASKPE-----FGDFQANGALPLAKPLKQ 56

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-SRVYAGEQMKDI 124
                      + IA  +   L  +P+   +  + + A PGF+N+ +     A E    +
Sbjct: 57  A---------PRQIAGAIVEALQADPAFTALCLEPQIAGPGFINLTIRPECLAAEVSARL 107

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
               +  P ++    V+VDFSSPNIA++
Sbjct: 108 GDPRLGVPEVHNDSAVVVDFSSPNIAKE 135


>gi|17231209|ref|NP_487757.1| arginyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|23822197|sp|Q8YQU9.1|SYR_NOSS1 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|17132851|dbj|BAB75416.1| arginyl-tRNA-synthetase [Nostoc sp. PCC 7120]
          Length = 588

 Score =  289 bits (739), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 154/327 (47%), Positives = 215/327 (65%), Gaps = 25/327 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N A++L K    +          ++IAS +  +L     ++++ +K E+A PG
Sbjct: 38  KFGDYQANVALSLSKKLGQQ---------PRAIASAIVEKL----DVSEICEKPEIAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L   Y   Q+  I  +   GV  PT     R +VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85  FINLKLKTAYLEAQLNTIQADTRLGV--PTAKHPQREIVDFSSPNIAKEMHVGHLRSTII 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKE 417
           GD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  P+ LT +    I DL +FY++
Sbjct: 143 GDSIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVSPEALTTANALDIGDLVSFYRQ 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +K+RFD DE F++ A Q VV LQ    D   AW+++C+ SR++FQ IYD L+V LTERGE
Sbjct: 203 AKQRFDADEAFQETARQEVVRLQAGAADTLHAWKLLCEQSRQEFQVIYDLLDVKLTERGE 262

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDL 532
           SFY   +  +V  LEK GLL  + G K ++       +   +P+ + KSDGG+ Y T+DL
Sbjct: 263 SFYNPLLPTVVENLEKSGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNYATTDL 322

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
           AA+R RI++++A  I+Y+TD GQ  HF
Sbjct: 323 AALRYRIQKDEAKRIIYITDAGQANHF 349



 Score =  276 bits (707), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 156/351 (44%), Positives = 208/351 (59%), Gaps = 52/351 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  P+ LT +    I DL +
Sbjct: 139 STIIGDSIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVSPEALTTANALDIGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD DE F++ A Q VV LQ    D   AW+++C+ SR++FQ IYD L+V LT
Sbjct: 199 FYRQAKQRFDADEAFQETARQEVVRLQAGAADTLHAWKLLCEQSRQEFQVIYDLLDVKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  LEK G L              T + G                 
Sbjct: 259 ERGESFYNPLLPTVVENLEKSGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+Y+TD GQ  HF    + A+KAG + P+   +  V FG+VL
Sbjct: 319 TTDLAALRYRIQKDEAKRIIYITDAGQANHFAQFFQVARKAGWI-PDDVELVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLD--KLKDKNRHTELTPTELSEAQQAVAYGCI 813
           GED KKFKTRSGDTV+L +LLDE + R+    +++ K    E T   + +  + V    +
Sbjct: 378 GEDGKKFKTRSGDTVRLRDLLDEAISRAHADVEVRLKAEEREETAEFIDKVAEVVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADLS NR  +Y+FS+DKMLD +GNTA Y+LYAY RI  I+R   IN  D
Sbjct: 438 KYADLSQNRTSNYIFSYDKMLDLKGNTAPYMLYAYARIQGISRKGEINFAD 488



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 112/185 (60%), Gaps = 9/185 (4%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +LK + R  E T   + +  + V    +KYADLS NR  +Y+FS+DKMLD +GNTA Y+L
Sbjct: 412  RLKAEER--EETAEFIDKVAEVVGISAVKYADLSQNRTSNYIFSYDKMLDLKGNTAPYML 469

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YAY RI  I+R   IN  DL     +  V L+HE EFALAK LL++ +V+  V  DL  +
Sbjct: 470  YAYARIQGISRKGEINFADL---GDNAKVILQHETEFALAKYLLQLGEVISTVEEDLSPN 526

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEK-DAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIR 1114
             LCEYLY++S  F+ FYD    ++   AE   + + T RL+L + TA+ +K    +L I+
Sbjct: 527  RLCEYLYELSKRFNAFYDRNQGVQVLSAE---EPLRTSRLVLCDLTARTLKLGLSLLGIQ 583

Query: 1115 TVHKM 1119
             + +M
Sbjct: 584  VLERM 588



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 18/109 (16%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q N A++L K    +          ++IAS +  +L     ++++ +K E A PG
Sbjct: 38  KFGDYQANVALSLSKKLGQQ---------PRAIASAIVEKL----DVSEICEKPEIAGPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   Y   Q+  I  +   GV  PT     R +VDFSSPNIA++
Sbjct: 85  FINLKLKTAYLEAQLNTIQADTRLGV--PTAKHPQREIVDFSSPNIAKE 131


>gi|220909041|ref|YP_002484352.1| arginyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|254782957|sp|B8HSK8.1|SYR_CYAP4 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|219865652|gb|ACL45991.1| arginyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 585

 Score =  289 bits (739), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 152/330 (46%), Positives = 211/330 (63%), Gaps = 31/330 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N  + L K               ++IAS +   L     + +  +   +A PG
Sbjct: 38  KFGDYQSNAPLPLAKQLNQP---------PRTIASTIVDHL----EVGEAWEPPTIAGPG 84

Query: 303 FVNVFLSRVYAGEQIK------DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N  L   Y   Q++       + ++ V+ P     LRV+VDFSSPNIAKEMHVGHLRS
Sbjct: 85  FINFTLKTSYLASQLELRLTDPRLGISAVKLP-----LRVVVDFSSPNIAKEMHVGHLRS 139

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAF 414
           TIIGD ++R+LE+LGH+V+RLNHVGDWGTQFGMLI +L++  P+ LT    +   DL AF
Sbjct: 140 TIIGDCLARILEFLGHEVLRLNHVGDWGTQFGMLITYLREVCPEALTAPDAVDLGDLVAF 199

Query: 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 474
           Y+++K+RFD D  F+  A Q VV LQ  +PD   AW+++C  SRR+F+KIY+ L++ LTE
Sbjct: 200 YRQAKQRFDSDPDFQAIARQEVVRLQSGEPDSLHAWQLLCAQSRREFEKIYNLLDIKLTE 259

Query: 475 RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDT 529
           RGESFY   + Q++  L++ GLL  D G K ++ E   +      P+ + KSDGG+ Y T
Sbjct: 260 RGESFYNPLLPQVIQALDQTGLLVEDQGAKCVFLEGYTNKAGDPQPLIVQKSDGGYIYAT 319

Query: 530 SDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           +DLAA+R RIE+++ADWI+YVTD GQ  HF
Sbjct: 320 TDLAALRYRIEQDQADWIIYVTDAGQSTHF 349



 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 160/373 (42%), Positives = 218/373 (58%), Gaps = 57/373 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD ++R+LE+LGH+V+RLNHVGDWGTQFGMLI +L++  P+ LT    +   DL A
Sbjct: 139 STIIGDCLARILEFLGHEVLRLNHVGDWGTQFGMLITYLREVCPEALTAPDAVDLGDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD D  F+  A Q VV LQ  +PD   AW+++C  SRR+F+KIY+ L++ LT
Sbjct: 199 FYRQAKQRFDSDPDFQAIARQEVVRLQSGEPDSLHAWQLLCAQSRREFEKIYNLLDIKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + Q++  L++ G L              T K G                 
Sbjct: 259 ERGESFYNPLLPQVIQALDQTGLLVEDQGAKCVFLEGYTNKAGDPQPLIVQKSDGGYIYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + A++AG + PN+ R+  V FG+V 
Sbjct: 319 TTDLAALRYRIEQDQADWIIYVTDAGQSTHFAQVFQVAQRAGWI-PNRIRLVHVPFGLVQ 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYG 811
           GED KK KTRSGDTV+L +LLDE + R+    + +L+ + R    TP  +    Q V  G
Sbjct: 378 GEDGKKLKTRSGDTVRLQDLLDEAIDRARNDLVSRLEAEGRQE--TPEFIDHVAQVVGIG 435

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE-PDP 870
            +KYADLS NR  +YVFS+DKML  +GNTA YL+YAY R+  I+R   I+ E   E P  
Sbjct: 436 AVKYADLSQNRTSNYVFSYDKMLSLQGNTAPYLIYAYVRVQGISRKGQIDLEQLTEQPTL 495

Query: 871 SQSEVEDRCCPSH 883
           S  E E++    H
Sbjct: 496 SLQEEEEKLLARH 508



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 8/173 (4%)

Query: 947  TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006
            TP  +    Q V  G +KYADLS NR  +YVFS+DKML  +GNTA YL+YAY R+  I+R
Sbjct: 421  TPEFIDHVAQVVGIGAVKYADLSQNRTSNYVFSYDKMLSLQGNTAPYLIYAYVRVQGISR 480

Query: 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST 1066
               I+ E L    +   +SL+ E+E  LA+ LL++ DVL  VT DL  + LC+YL+++S 
Sbjct: 481  KGQIDLEQL---TEQPTLSLQEEEEKLLARHLLQLEDVLAQVTEDLLPNRLCQYLFELSQ 537

Query: 1067 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             F++FYD C  ++ +     + +   RL LA+ TA+ +K    +L I+ + +M
Sbjct: 538  KFNQFYDRCPILQAE-----EPLRNSRLGLAQLTARTLKLGLSLLGIQVLERM 585



 Score = 47.4 bits (111), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 24/112 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q N  + L K               ++IAS +   L     + +  +    A PG
Sbjct: 38  KFGDYQSNAPLPLAKQLNQP---------PRTIASTIVDHL----EVGEAWEPPTIAGPG 84

Query: 107 FVNVFLSRVYAGEQMK------DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N  L   Y   Q++       + ++ V+ P     LRV+VDFSSPNIA++
Sbjct: 85  FINFTLKTSYLASQLELRLTDPRLGISAVKLP-----LRVVVDFSSPNIAKE 131


>gi|113955154|ref|YP_731855.1| arginyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123327552|sp|Q0I6R7.1|SYR_SYNS3 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|113882505|gb|ABI47463.1| arginyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 590

 Score =  288 bits (738), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 226/372 (60%), Gaps = 33/372 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPE---LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           + +   L      A+Q AFP+   L D   + A+  E     FGDFQ N A+ L K  K 
Sbjct: 2   LRIAQALDTQLREAMQRAFPDVDALLDPQLAPANKPE-----FGDFQANGALPLAKPLKQ 56

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
                      + IA  +   L  +P+ A +  + ++A PGF+N+ +       ++   +
Sbjct: 57  A---------PRLIAGAIVEALQADPAFAALCLEPQIAGPGFINLTIRPERLAAEVSARL 107

Query: 322 VN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            +   GV  P +     V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLN
Sbjct: 108 GDPRLGV--PEVQSDAAVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHRVLRLN 165

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCV 436
           HVGDWGTQFGMLI HL+   P+ L ++  +   DL AFY+E+KKRFDEDE F+  + + V
Sbjct: 166 HVGDWGTQFGMLITHLKQVAPETLNRADAVDLGDLVAFYREAKKRFDEDEAFQATSREEV 225

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 496
           V LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+ERGESFY  ++  ++  L++  L
Sbjct: 226 VKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLSERGESFYNPYLASVLSGLKEADL 285

Query: 497 LELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI----EEEKADWI 547
           L  DDG + ++     G+D   +P+ + KSDGGF Y T+DLAAIR R     + + A  +
Sbjct: 286 LVTDDGAECVFLEGVNGKDGKPLPVIVRKSDGGFNYATTDLAAIRYRFALAPDGDGARRV 345

Query: 548 VYVTDLGQGVHF 559
           +YVTD GQ  HF
Sbjct: 346 IYVTDAGQANHF 357



 Score =  263 bits (671), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 155/353 (43%), Positives = 204/353 (57%), Gaps = 62/353 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L ++  +   DL A
Sbjct: 143 STIIGDSLARVLEFRGHRVLRLNHVGDWGTQFGMLITHLKQVAPETLNRADAVDLGDLVA 202

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFDEDE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+
Sbjct: 203 FYREAKKRFDEDEAFQATSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLS 262

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSLT-----------------KKLGIV---------- 715
           ERGESFY  ++  ++  L K+ +L +T                 K L ++          
Sbjct: 263 ERGESFYNPYLASVLSGL-KEADLLVTDDGAECVFLEGVNGKDGKPLPVIVRKSDGGFNY 321

Query: 716 -------------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVG 750
                                    YVTD GQ  HF  + + AK+A  + P   R++ V 
Sbjct: 322 ATTDLAAIRYRFALAPDGDGARRVIYVTDAGQANHFAGVFQVAKRANWI-PEHGRLEHVP 380

Query: 751 FGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE----LSEAQQ 806
           FG+V GED KK KTRSGDTV+L +LLDE + R+   L  + R  E   +E    +     
Sbjct: 381 FGLVQGEDGKKLKTRSGDTVRLRDLLDEAVERAEADL--RRRLEEEGRSEDDQFIEHVAG 438

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 439 TVGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 491



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 11/162 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G    DL  
Sbjct: 440  VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLE- 494

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
             A++  +     +E++L + LL+ + V+  V  +L  + LC YL+++S  F+ FYD    
Sbjct: 495  -AEAGMLQFSEPQEWSLVRELLKFDAVIAEVEEELLPNRLCSYLFELSQVFNRFYDQVPV 553

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++  AEG+       RL L   TA  +K    +L I T+ +M
Sbjct: 554  LK--AEGQ---SLPSRLALCRLTADTLKSGLGLLGIATLERM 590



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 18/148 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPE---LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           + +   L      A+Q AFP+   L D   + A+  E     FGDFQ N A+ L K  K 
Sbjct: 2   LRIAQALDTQLREAMQRAFPDVDALLDPQLAPANKPE-----FGDFQANGALPLAKPLKQ 56

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-SRVYAGEQMKDI 124
                      + IA  +   L  +P+ A +  + + A PGF+N+ +     A E    +
Sbjct: 57  A---------PRLIAGAIVEALQADPAFAALCLEPQIAGPGFINLTIRPERLAAEVSARL 107

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
               +  P +     V+VDFSSPNIA++
Sbjct: 108 GDPRLGVPEVQSDAAVVVDFSSPNIAKE 135


>gi|260436601|ref|ZP_05790571.1| arginyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260414475|gb|EEX07771.1| arginyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 590

 Score =  288 bits (738), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 165/370 (44%), Positives = 220/370 (59%), Gaps = 29/370 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           +S+   L      A+Q AFPE     D   + AS  E     FGDFQ N A+ L K  K 
Sbjct: 2   LSLSQSLDAQLRAAMQRAFPEADAGLDPQLAPASKPE-----FGDFQANGALPLAKPLKQ 56

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL-SRVYAGEQIKDI 320
                      + IAS +  +L  +P+   +  + ++A PGF+N+ +     A E    +
Sbjct: 57  A---------PRQIASAIVEQLQADPAFTDLCLEPQIAGPGFINLTIRPERLAAEVSARL 107

Query: 321 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
               +  P ++    V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLNHV
Sbjct: 108 GDERLGVPAVSNAAPVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHPVLRLNHV 167

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLI HL+   P+ L  +  +   DL AFY+E+KKRFD+DE F+  +   VV 
Sbjct: 168 GDWGTQFGMLITHLKQVAPEALDTADAVDLGDLVAFYREAKKRFDDDEAFQSTSRDEVVK 227

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ  DP   KAW ++C  SRR+FQKIYDRL++ L+ERGESFY   +  ++  L+   LL 
Sbjct: 228 LQGGDPVSLKAWGLLCAQSRREFQKIYDRLDIRLSERGESFYNPFLPAVIDGLKAAELLV 287

Query: 499 LDDGRKI-----MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI----EEEKADWIVY 549
            DDG +      M G+D   +P+ + KSDGGF Y T+DLAAIR R     E + A  +VY
Sbjct: 288 TDDGAQCVFLEGMQGKDSKPLPVIVQKSDGGFNYATTDLAAIRYRFGVAPEGDGARRVVY 347

Query: 550 VTDLGQGVHF 559
           VTD GQ  HF
Sbjct: 348 VTDAGQANHF 357



 Score =  259 bits (662), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 149/350 (42%), Positives = 204/350 (58%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL A
Sbjct: 143 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALDTADAVDLGDLVA 202

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFD+DE F+  +   VV LQ  DP   KAW ++C  SRR+FQKIYDRL++ L+
Sbjct: 203 FYREAKKRFDDDEAFQSTSRDEVVKLQGGDPVSLKAWGLLCAQSRREFQKIYDRLDIRLS 262

Query: 683 ERGESFYQKHMEQLV-------------------------------PYLEKKGN------ 705
           ERGESFY   +  ++                               P + +K +      
Sbjct: 263 ERGESFYNPFLPAVIDGLKAAELLVTDDGAQCVFLEGMQGKDSKPLPVIVQKSDGGFNYA 322

Query: 706 ----LSLTKKLG----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                ++  + G          +VYVTD GQ  HF  + + A++AG + P+  R++ V F
Sbjct: 323 TTDLAAIRYRFGVAPEGDGARRVVYVTDAGQANHFAGVFQVAERAGWI-PDGARLEHVPF 381

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L +LLDE + R+   L+ + +  E + +E  +      V 
Sbjct: 382 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERAETDLRSRLKEEERSESEEFIQHVAGTVG 441

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 442 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYALVRIAGIARKGG 491



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 11/162 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G    DL  
Sbjct: 440  VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYALVRIAGIARKGG----DL-- 493

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
            A  +  +     +E+AL + LL+ + V+  V  +L  + LC Y +++S  F+ FYD    
Sbjct: 494  AGTNAQLQFSEPQEWALVRELLKFDAVIAEVEEELLPNRLCSYTFELSQVFNRFYDQVPV 553

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ D E         RL L   TA  ++    +L I T+ +M
Sbjct: 554  LKADPE-----ALASRLALCRLTADTLRLGLGLLGIATLDRM 590



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           +S+   L      A+Q AFPE     D   + AS  E     FGDFQ N A+ L K  K 
Sbjct: 2   LSLSQSLDAQLRAAMQRAFPEADAGLDPQLAPASKPE-----FGDFQANGALPLAKPLKQ 56

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-SRVYAGEQMKDI 124
                      + IAS +  +L  +P+   +  + + A PGF+N+ +     A E    +
Sbjct: 57  A---------PRQIASAIVEQLQADPAFTDLCLEPQIAGPGFINLTIRPERLAAEVSARL 107

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
               +  P ++    V+VDFSSPNIA++
Sbjct: 108 GDERLGVPAVSNAAPVVVDFSSPNIAKE 135


>gi|237802882|ref|YP_002888076.1| arginyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274116|emb|CAX10910.1| arginyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
          Length = 563

 Score =  288 bits (738), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 155/361 (42%), Positives = 224/361 (62%), Gaps = 27/361 (7%)

Query: 210 YLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 269
           +L+ + + A+  AF EL + T  +  + +++   FG +QCNDAM L ++ +     K+P 
Sbjct: 7   FLTSLCSAAIHQAFSELEELTLDITPSTKEH---FGHYQCNDAMKLARVLR-----KSPR 58

Query: 270 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---IVNGVQ 326
            IA+SI     + +   P        IE+A  GF+N   S+ +   Q++     + NG +
Sbjct: 59  AIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELANGFR 109

Query: 327 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 386
             +  K   V++DFSSPNIAK+MHVGHLRSTIIGD ++R   ++GHDV+RLNH+GDWGT 
Sbjct: 110 AASPQK---VIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGDWGTA 166

Query: 387 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDY 446
           FGMLI +LQ+   + + +   + DL A YK++  RF ED  FKKR+   VVALQ  D   
Sbjct: 167 FGMLITYLQETSQEAIHQ---LEDLTALYKKAHARFAEDSEFKKRSQHNVVALQSGDAQA 223

Query: 447 KKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIM 506
              W+ IC VS + FQ IY  L+V L  RGESFY   + ++V  LE K L+ L DG K +
Sbjct: 224 LALWKQICSVSEKSFQTIYSILDVELHTRGESFYNPFLAEVVADLESKNLVTLSDGAKCV 283

Query: 507 WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEEST 566
           + E   SIP+ I KSDGG+ Y T+D+AA+R RI++++AD I+ VTD GQ +HF+LLE + 
Sbjct: 284 FHEAF-SIPLMIQKSDGGYNYATTDVAAMRYRIQQDQADRILIVTDSGQSLHFQLLEATC 342

Query: 567 I 567
           +
Sbjct: 343 L 343



 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/345 (41%), Positives = 187/345 (54%), Gaps = 47/345 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R   ++GHDV+RLNH+GDWGT FGMLI +LQ+   + + +   + DL A Y
Sbjct: 136 STIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETSQEAIHQ---LEDLTALY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  D      W+ IC VS + FQ IY  L+V L  R
Sbjct: 193 KKAHARFAEDSEFKKRSQHNVVALQSGDAQALALWKQICSVSEKSFQTIYSILDVELHTR 252

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + ++V  LE K  ++L+     V+                            
Sbjct: 253 GESFYNPFLAEVVADLESKNLVTLSDGAKCVFHEAFSIPLMIQKSDGGYNYATTDVAAMR 312

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD GQ +HF+LLE     AG L P+K     VGFG+VL    +KFK
Sbjct: 313 YRIQQDQADRILIVTDSGQSLHFQLLEATCLAAGYL-PSKGIFSHVGFGLVLDTQGRKFK 371

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + ++ + L  K    +++  EL+     +    IKYADLS +R 
Sbjct: 372 TRSGENIKLRELLDTAVEKAKESL--KAHRPDISEEELAYQGPILGINAIKYADLSSHRI 429

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
            DYVFSF+KML   GNTA+ LLYAY RI  I R  G+ S    EP
Sbjct: 430 NDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGLESLPQEEP 474



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 18/196 (9%)

Query: 930  LRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            LR  LD   +K + +      +++  EL+     +    IKYADLS +R  DYVFSF+KM
Sbjct: 380  LRELLDTAVEKAKESLKAHRPDISEEELAYQGPILGINAIKYADLSSHRINDYVFSFEKM 439

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            L   GNTA+ LLYAY RI  I R  G+ S       Q  P+++    E ALA TLLR  +
Sbjct: 440  LRFEGNTAMSLLYAYVRIQGIKRRMGLES-----LPQEEPLAIHEPAEEALALTLLRFPE 494

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
            +L L  R+LC H L +YLY ++  F+ F+ +C+    D++ +       RL L   T + 
Sbjct: 495  ILDLTLRELCPHFLTDYLYALTNKFNAFFRDCHIEGSDSQQE-------RLYLCGLTERT 547

Query: 1104 MKKCFDILNIRTVHKM 1119
            +     +L ++T++ +
Sbjct: 548  LSTGMHLLGLKTLNHL 563



 Score = 66.6 bits (161), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 23/141 (16%)

Query: 14  YLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 73
           +L+ + + A+  AF EL + T  +  + +++   FG +QCNDAM L ++      +K+P 
Sbjct: 7   FLTSLCSAAIHQAFSELEELTLDITPSTKEH---FGHYQCNDAMKLARVL-----RKSPR 58

Query: 74  DIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---IVNGVQ 130
            IA+SI     + +   P        IE A  GF+N   S+ +   Q++     + NG +
Sbjct: 59  AIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELANGFR 109

Query: 131 PPTLNKKLRVLVDFSSPNIAR 151
             +  K   V++DFSSPNIA+
Sbjct: 110 AASPQK---VIIDFSSPNIAK 127


>gi|186684132|ref|YP_001867328.1| arginyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|238689424|sp|B2J6I0.1|SYR_NOSP7 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|186466584|gb|ACC82385.1| arginyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 584

 Score =  288 bits (738), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/328 (48%), Positives = 213/328 (64%), Gaps = 27/328 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEVAKP 301
           KFGD+Q N A++L K        K P  IA +I   +  SE+   P         E+A P
Sbjct: 38  KFGDYQANVALSLSKKLG-----KQPRAIAGAIVEKLDVSEICEPP---------EIAGP 83

Query: 302 GFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           GF+N+ L   Y   Q+ DI  +   GV  P      R  VDFSSPNIAKEMHVGHLRSTI
Sbjct: 84  GFINLKLKTAYLEAQLNDIQADPRLGV--PAAKTPKRENVDFSSPNIAKEMHVGHLRSTI 141

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYK 416
           IGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +PD LT +    I DL +FY+
Sbjct: 142 IGDSIARILEFQGHDVLRLNHVGDWGTQFGMLIAYLREVYPDALTTANALDIGDLVSFYR 201

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 476
           ++K+RFD D  F++ A Q VV LQ    D   AW+++C+ SRR+FQ IY+ L++ LTERG
Sbjct: 202 KAKQRFDTDTAFQETARQEVVRLQAGAEDTLHAWKLLCEQSRREFQVIYELLDIKLTERG 261

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSD 531
           ESFY   +  +V  LEK GLL  + G K ++ E     +   +P+ + KSDGG+ Y T+D
Sbjct: 262 ESFYNPLLSGIVEDLEKSGLLVENQGAKCVFLEGFTNREGEPLPLIVQKSDGGYNYATTD 321

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           LA++R RI++++A  I+YVTD GQG HF
Sbjct: 322 LASLRYRIQQDQAKRIIYVTDAGQGNHF 349



 Score =  281 bits (719), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/348 (45%), Positives = 209/348 (60%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +PD LT +    I DL +
Sbjct: 139 STIIGDSIARILEFQGHDVLRLNHVGDWGTQFGMLIAYLREVYPDALTTANALDIGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD D  F++ A Q VV LQ    D   AW+++C+ SRR+FQ IY+ L++ LT
Sbjct: 199 FYRKAKQRFDTDTAFQETARQEVVRLQAGAEDTLHAWKLLCEQSRREFQVIYELLDIKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  LEK G L              T + G                 
Sbjct: 259 ERGESFYNPLLSGIVEDLEKSGLLVENQGAKCVFLEGFTNREGEPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQG HF    + A+KAG + P+   +  V FG+VL
Sbjct: 319 TTDLASLRYRIQQDQAKRIIYVTDAGQGNHFAQFFQVARKAGWI-PDDVELVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KKFKTRSGDTV+L +LLDE +  +   LK + +  E   TE  ++E  + V    +
Sbjct: 378 GEDGKKFKTRSGDTVRLRDLLDEAVSHAHADLKTRLQKEERQETEEFINEVARVVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  +Y+FS+DKMLD +GNTA Y+LY Y RI  I+R   IN
Sbjct: 438 KYADLSQNRTSNYIFSYDKMLDLKGNTAPYMLYVYARIHGISRKGDIN 485



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 114/185 (61%), Gaps = 11/185 (5%)

Query: 937  LKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYL 994
            LK + +  E   TE  ++E  + V    +KYADLS NR  +Y+FS+DKMLD +GNTA Y+
Sbjct: 409  LKTRLQKEERQETEEFINEVARVVGISAVKYADLSQNRTSNYIFSYDKMLDLKGNTAPYM 468

Query: 995  LYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCL 1054
            LY Y RI  I+R   IN ++L     +  V L+HE E ALAK LL++++V+  V +DL  
Sbjct: 469  LYVYARIHGISRKGDINFKEL----GNNAVLLQHETELALAKYLLQLDEVISSVEQDLLP 524

Query: 1055 HHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIR 1114
            + LCEYL+++S  F++FYD C  ++ +   +     T RL+L + TA+ +K    +L I+
Sbjct: 525  NRLCEYLFELSQKFNQFYDRCSILQAEEPQR-----TSRLVLCDLTARTLKLGLSLLGIQ 579

Query: 1115 TVHKM 1119
             + +M
Sbjct: 580  VLERM 584



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 20/110 (18%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEAAKP 105
           KFGD+Q N A++L K        K P  IA +I   +  SE+   P         E A P
Sbjct: 38  KFGDYQANVALSLSKKLG-----KQPRAIAGAIVEKLDVSEICEPP---------EIAGP 83

Query: 106 GFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           GF+N+ L   Y   Q+ DI  +   GV  P      R  VDFSSPNIA++
Sbjct: 84  GFINLKLKTAYLEAQLNDIQADPRLGV--PAAKTPKRENVDFSSPNIAKE 131


>gi|284929097|ref|YP_003421619.1| arginyl-tRNA synthetase [cyanobacterium UCYN-A]
 gi|284809556|gb|ADB95261.1| arginyl-tRNA synthetase [cyanobacterium UCYN-A]
          Length = 584

 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 155/355 (43%), Positives = 229/355 (64%), Gaps = 27/355 (7%)

Query: 215 FTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQS 274
           F +A+  +F E  +      S  +   H   D+Q N A +L K  K K          Q 
Sbjct: 12  FNYALIKSFGEEFNNVDPQVSIAKDTRH--ADYQVNIAFSLAKKLKKK---------PQE 60

Query: 275 IASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPTLN 331
           I+ ++   L  +P    V +   +  PGF+N+ + + Y  +QIK +  +   G+     +
Sbjct: 61  ISQIIIGNLPVSP----VYETPSIGGPGFINLRIKKGYLEDQIKLLCEDERLGILKTHNS 116

Query: 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLI 391
           +K  ++VDFSSPNIAKEMHVGHLRSTIIGD++SR+LE++GHD++RLNHVGDWGTQFGMLI
Sbjct: 117 QK--IIVDFSSPNIAKEMHVGHLRSTIIGDSLSRILEFIGHDILRLNHVGDWGTQFGMLI 174

Query: 392 AHLQDKFPDYLTKSP--PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA 449
           ++L++ FP+ L ++    I DL +FY+++KKRFDED  F++ + + VV LQ  + +Y+KA
Sbjct: 175 SYLKEVFPNALYEANVLQIEDLVSFYRKAKKRFDEDIQFQEISREAVVKLQLGNEEYRKA 234

Query: 450 WEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE 509
           W+++C+ SRR+FQ IYD L + LTERGESFY   +E++V  L+K+ +LE+ DG K ++ E
Sbjct: 235 WKLLCEQSRREFQVIYDILQIELTERGESFYNPFLEEIVNDLDKQKILEISDGAKCVFLE 294

Query: 510 -----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
                    +P+ + KSDGG+ Y T+DLAA++ RI  +KA  I+YVTD GQ  HF
Sbjct: 295 GFINKSGNPLPLIVQKSDGGYNYATTDLAALKYRINIDKAKHIIYVTDAGQSNHF 349



 Score =  279 bits (714), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 164/397 (41%), Positives = 237/397 (59%), Gaps = 60/397 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD++SR+LE++GHD++RLNHVGDWGTQFGMLI++L++ FP+ L ++    I DL +
Sbjct: 139 STIIGDSLSRILEFIGHDILRLNHVGDWGTQFGMLISYLKEVFPNALYEANVLQIEDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++KKRFDED  F++ + + VV LQ  + +Y+KAW+++C+ SRR+FQ IYD L + LT
Sbjct: 199 FYRKAKKRFDEDIQFQEISREAVVKLQLGNEEYRKAWKLLCEQSRREFQVIYDILQIELT 258

Query: 683 ERGESFYQKHMEQLVP---------------------YLEKKGN---------------- 705
           ERGESFY   +E++V                      ++ K GN                
Sbjct: 259 ERGESFYNPFLEEIVNDLDKQKILEISDGAKCVFLEGFINKSGNPLPLIVQKSDGGYNYA 318

Query: 706 ----------LSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                     +++ K   I+YVTD GQ  HF  + + A++AG L   +T +  + FG+V 
Sbjct: 319 TTDLAALKYRINIDKAKHIIYVTDAGQSNHFAQVFQIAQRAGFLR-EETSVSHIPFGLVK 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGL---RRSL-DKLKDKNRHTELTPTELSEAQQAVAYG 811
           GED KK KTRSG+T++L +LLD+ +   R++L ++LK +NR  E +   ++     V  G
Sbjct: 378 GEDGKKLKTRSGETIRLKDLLDKSIYQARKNLENRLKTENR--EESQEFINNVANVVGIG 435

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPS 871
            +KYADLS NRN DY+FS+DKML  +GNTA Y+LYAY RI SI R   IN       + +
Sbjct: 436 SVKYADLSQNRNSDYIFSYDKMLSLQGNTAPYMLYAYARIKSILREEKINY---AALENT 492

Query: 872 QSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLC 908
           Q  ++D      AK   +      E+IE  L  N LC
Sbjct: 493 QVILQDEAEIDLAKYLLQLN-EVIEIIENTLLPNRLC 528



 Score =  137 bits (345), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 116/193 (60%), Gaps = 12/193 (6%)

Query: 928  YGLRRSL-DKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
            Y  R++L ++LK +NR  E +   ++     V  G +KYADLS NRN DY+FS+DKML  
Sbjct: 403  YQARKNLENRLKTENR--EESQEFINNVANVVGIGSVKYADLSQNRNSDYIFSYDKMLSL 460

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
            +GNTA Y+LYAY RI SI R   IN      A ++T V L+ E E  LAK LL++N+V+ 
Sbjct: 461  QGNTAPYMLYAYARIKSILREEKINY----AALENTQVILQDEAEIDLAKYLLQLNEVIE 516

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            ++   L  + LCEYLY++S  F+ FY+NC  ++      + +    RL+L + TA+ ++ 
Sbjct: 517  IIENTLLPNRLCEYLYELSKRFNRFYENCPVLK-----SVDSTKFSRLVLCDLTARTLEL 571

Query: 1107 CFDILNIRTVHKM 1119
               +L I  + +M
Sbjct: 572  GLSLLGIDVLERM 584



 Score = 43.5 bits (101), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 20/137 (14%)

Query: 19  FTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQS 78
           F +A+  +F E  +      S  +   H   D+Q N A +L K  K K          Q 
Sbjct: 12  FNYALIKSFGEEFNNVDPQVSIAKDTRH--ADYQVNIAFSLAKKLKKK---------PQE 60

Query: 79  IASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQPPTLN 135
           I+ ++   L  +P    V +      PGF+N+ + + Y  +Q+K +  +   G+     +
Sbjct: 61  ISQIIIGNLPVSP----VYETPSIGGPGFINLRIKKGYLEDQIKLLCEDERLGILKTHNS 116

Query: 136 KKLRVLVDFSSPNIARK 152
           +K  ++VDFSSPNIA++
Sbjct: 117 QK--IIVDFSSPNIAKE 131


>gi|218245401|ref|YP_002370772.1| arginyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|226701374|sp|B7JVP5.1|SYR_CYAP8 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|218165879|gb|ACK64616.1| arginyl-tRNA synthetase [Cyanothece sp. PCC 8801]
          Length = 585

 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/368 (44%), Positives = 226/368 (61%), Gaps = 35/368 (9%)

Query: 206 SVRDYLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           S+ + L++ F  A+  AF  E  D    V   +     KFGD+Q N A++L K     GE
Sbjct: 3   SINEQLTNYFIQALVKAFGAEFSDIDPIVVPASNP---KFGDYQANIALSLAKKL---GE 56

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK------ 318
           +  P  IAQ I          N SL  + +   +A PGF+N+ +   Y   Q+K      
Sbjct: 57  Q--PRAIAQKIID--------NLSLEDLGELPTIAGPGFINIKIKPTYLATQLKVQQNSS 106

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + V    P       +++VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE  GH V+RLN
Sbjct: 107 SLGVTKADPIE-----KIIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEVRGHQVLRLN 161

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCV 436
           HVGDWGTQFGMLIA+L + +PD LT +    I DL  FYK++KKRFDEDE F++ A   V
Sbjct: 162 HVGDWGTQFGMLIAYLAEVYPDALTTADALDIGDLVTFYKQAKKRFDEDEKFQETARNQV 221

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 496
           V LQ  D   + AW+++C+ SRR+FQ IYD L++ +TERGESFY   +E ++  L+ +GL
Sbjct: 222 VKLQAGDSQTRHAWQLLCEQSRREFQVIYDILDINITERGESFYNPLLEDIIKELDHQGL 281

Query: 497 LELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT 551
           L+ D G + ++      +    +P+ + KSDGG+ Y T+DLAA++ RI +++A+ I+YVT
Sbjct: 282 LKKDAGAQCVFLDGFTNKSGDPLPLIVQKSDGGYNYATTDLAALKYRITQDQAERIIYVT 341

Query: 552 DLGQGVHF 559
           D GQ  HF
Sbjct: 342 DAGQANHF 349



 Score =  273 bits (697), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 160/359 (44%), Positives = 208/359 (57%), Gaps = 60/359 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP- 616
           H R    STIIGD I+R+LE  GH V+RLNHVGDWGTQFGMLIA+L + +PD LT +   
Sbjct: 136 HLR----STIIGDCIARILEVRGHQVLRLNHVGDWGTQFGMLIAYLAEVYPDALTTADAL 191

Query: 617 -IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
            I DL  FYK++KKRFDEDE F++ A   VV LQ  D   + AW+++C+ SRR+FQ IYD
Sbjct: 192 DIGDLVTFYKQAKKRFDEDEKFQETARNQVVKLQAGDSQTRHAWQLLCEQSRREFQVIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------- 713
            L++ +TERGESFY   +E ++  L+ +G L              T K G          
Sbjct: 252 ILDINITERGESFYNPLLEDIIKELDHQGLLKKDAGAQCVFLDGFTNKSGDPLPLIVQKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD GQ  HF  + + AKKA I+ P    +  
Sbjct: 312 DGGYNYATTDLAALKYRITQDQAERIIYVTDAGQANHFAQVFQVAKKAHII-PKNVEIIH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL---RRSLDK-LKDKNRHTELTPTELSEA 804
           V FG+V GED KK KTRSG T+KL +LLDE +   R+ L+K L ++ R    +   ++  
Sbjct: 371 VPFGLVKGEDGKKLKTRSGTTIKLRDLLDEAVIYARQDLEKRLAEEGRQE--SEDFIANV 428

Query: 805 QQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            Q V    +KYADLS NR  DY+FS+DKML  +GNTA Y+LYAY RI SI+R   I+ E
Sbjct: 429 SQVVGISAVKYADLSQNRTSDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNIDFE 487



 Score =  133 bits (334), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 103/169 (60%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   Q V    +KYADLS NR  DY+FS+DKML  +GNTA Y+LYAY RI SI+R   I
Sbjct: 425  IANVSQVVGISAVKYADLSQNRTSDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            + E L+   Q   + L+ E E  L K LL++++V+  V + L  + LC+YLY++S  F+ 
Sbjct: 485  DFESLQ---QEAKIILQEETEIELGKYLLQLSEVIEEVEKTLLPNRLCDYLYELSKKFNR 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  ++ +     + + T RLLL + TA+ +K    +L I  + +M
Sbjct: 542  FYENCPVLKSE-----EPLRTSRLLLCDLTARTLKLGLSLLGIPVLERM 585



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 30/151 (19%)

Query: 10  SVRDYLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           S+ + L++ F  A+  AF  E  D    V   +     KFGD+Q N A++L K     GE
Sbjct: 3   SINEQLTNYFIQALVKAFGAEFSDIDPIVVPASNP---KFGDYQANIALSLAKKL---GE 56

Query: 69  KKNPFDIAQSIASVVTSE-LATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK----- 122
           +  P  IAQ I   ++ E L   P++A          PGF+N+ +   Y   Q+K     
Sbjct: 57  Q--PRAIAQKIIDNLSLEDLGELPTIAG---------PGFINIKIKPTYLATQLKVQQNS 105

Query: 123 -DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             + V    P       +++VDFSSPNIA++
Sbjct: 106 SSLGVTKADPIE-----KIIVDFSSPNIAKE 131


>gi|255070885|ref|XP_002507524.1| arginyl-tRNA synthetase [Micromonas sp. RCC299]
 gi|226522799|gb|ACO68782.1| arginyl-tRNA synthetase [Micromonas sp. RCC299]
          Length = 646

 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 183/461 (39%), Positives = 252/461 (54%), Gaps = 48/461 (10%)

Query: 183 SSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKY 240
           SS+ +  T G+     VP  D   +R+ +   F+ AV        L D   S  S N   
Sbjct: 47  SSACNPSTFGS-----VPTGD--GLREIVKAAFSEAVTAVLSRGTLVDVNISECSNN--- 96

Query: 241 VHKFGDFQCNDAMALCKIFKDKGEKK--NPFDIAQSIASVVTSELATNPSLAKVIDKIEV 298
               GD+QCN AM +    K KG+    NP  +A++I   +       P    +  +  V
Sbjct: 97  --VVGDYQCNSAMPIFAELKQKGDTSFSNPRSLAEAIVEAI-------PGREHLFAQTSV 147

Query: 299 AKPGFVNVFLSRVYAGEQIKDIIVNGVQ-----PPTLNKKL--RVLVDFSSPNIAK--EM 349
           A PGFVNV  S  +    + D +VN        PP  N  +  R +VD+SSPNIAK  EM
Sbjct: 148 AGPGFVNVTFSASFLAAGVLDTVVNSTDEKIRIPPQRNMSIPKRAVVDYSSPNIAKASEM 207

Query: 350 HVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 409
           HVGHLRSTIIG+TI R LE  G + VRLNHVGDWGTQFGML+ HL D     +     I 
Sbjct: 208 HVGHLRSTIIGETICRALESFGVETVRLNHVGDWGTQFGMLLTHLHDM---QMGSDFAIT 264

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DLQ FYK +K RFD+D+ FK RA   VV LQ  D   +K WE IC++SRRDF++IY  L+
Sbjct: 265 DLQEFYKVAKLRFDKDDDFKARAQSAVVRLQAGDVQMRKLWEEICEISRRDFEEIYRVLD 324

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDT 529
           +++ ERGESFY + +  ++  L KKG+   D G   ++G +  S P+   KSDGGF Y +
Sbjct: 325 ISIIERGESFYNEIIPLVLDELVKKGIAVEDQGALCIFG-NLESTPLICRKSDGGFNYAS 383

Query: 530 SDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHV 589
           +DLAA+ QR  + +AD I+YVTD+GQ  HF    E+       +  L+   +  +RL+HV
Sbjct: 384 TDLAALWQRTTQLEADQIIYVTDVGQSKHF----EAIFDAANRAGWLDKKDNTKIRLDHV 439

Query: 590 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           G     FG+++     +F    T+S     L++   E++ R
Sbjct: 440 G-----FGLVMGEDGKRFR---TRSGGTVPLRSLLSEAQSR 472



 Score =  265 bits (678), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 154/355 (43%), Positives = 203/355 (57%), Gaps = 53/355 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+TI R LE  G + VRLNHVGDWGTQFGML+ HL D     +     I DLQ FY
Sbjct: 214 STIIGETICRALESFGVETVRLNHVGDWGTQFGMLLTHLHDM---QMGSDFAITDLQEFY 270

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K +K RFD+D+ FK RA   VV LQ  D   +K WE IC++SRRDF++IY  L++++ ER
Sbjct: 271 KVAKLRFDKDDDFKARAQSAVVRLQAGDVQMRKLWEEICEISRRDFEEIYRVLDISIIER 330

Query: 685 GESFYQKHMEQLVPYLEKK-------------GNLSLTKKLG------------------ 713
           GESFY + +  ++  L KK             GNL  T  +                   
Sbjct: 331 GESFYNEIIPLVLDELVKKGIAVEDQGALCIFGNLESTPLICRKSDGGFNYASTDLAALW 390

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNP---NKTRMDFVGFGVVLGEDRK 760
                     I+YVTD+GQ  HF  + + A +AG L+     K R+D VGFG+V+GED K
Sbjct: 391 QRTTQLEADQIIYVTDVGQSKHFEAIFDAANRAGWLDKKDNTKIRLDHVGFGLVMGEDGK 450

Query: 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH 820
           +F+TRSG TV L  LL E   R L+ L  + R ++L   EL EA   +    +KYADL +
Sbjct: 451 RFRTRSGGTVPLRSLLSEAQSRCLESL--QTRSSDLDDKELLEASHIMGIAAVKYADLHN 508

Query: 821 NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSEV 875
           NR+ +YVFS+D+MLD +GNTAVYLLY + RI+++   A    ED     P+   V
Sbjct: 509 NRSTNYVFSYDRMLDMKGNTAVYLLYTHARISTLLSRA----EDQDLTSPAHQMV 559



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 13/196 (6%)

Query: 924  SLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            SL      R L+ L+   R ++L   EL EA   +    +KYADL +NR+ +YVFS+D+M
Sbjct: 464  SLLSEAQSRCLESLQ--TRSSDLDDKELLEASHIMGIAAVKYADLHNNRSTNYVFSYDRM 521

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            LD +GNTAVYLLY + RI+++   A    ED  + + +  +    EKE ALA  +L++ D
Sbjct: 522  LDMKGNTAVYLLYTHARISTLLSRA----EDQDLTSPAHQMVFTDEKERALAVAILKLPD 577

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
             L  V +DL    LC+Y Y +  A++EFY  C  I    E         RL+L  AT   
Sbjct: 578  ALRAVVQDLLPSRLCDYAYHLCVAYNEFYSTCKVIGSPEE-------KSRLILCRATVFS 630

Query: 1104 MKKCFDILNIRTVHKM 1119
            +++   +L I  +HK+
Sbjct: 631  LRRALFVLGITPLHKL 646



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 25/183 (13%)

Query: 2   NVPVRDRMSVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMAL 59
           +VP  D   +R+ +   F+ AV        L D   S  S N       GD+QCN AM +
Sbjct: 57  SVPTGD--GLREIVKAAFSEAVTAVLSRGTLVDVNISECSNN-----VVGDYQCNSAMPI 109

Query: 60  CKIFKDKGEKK--NPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYA 117
               K KG+    NP  +A++I   +       P    +  +   A PGFVNV  S  + 
Sbjct: 110 FAELKQKGDTSFSNPRSLAEAIVEAI-------PGREHLFAQTSVAGPGFVNVTFSASFL 162

Query: 118 GEQMKDIIVNGVQ-----PPTLNKKL--RVLVDFSSPNIARKGGFLYPHLPSQIHDILIS 170
              + D +VN        PP  N  +  R +VD+SSPNIA+       HL S I    I 
Sbjct: 163 AAGVLDTVVNSTDEKIRIPPQRNMSIPKRAVVDYSSPNIAKASEMHVGHLRSTIIGETIC 222

Query: 171 KAI 173
           +A+
Sbjct: 223 RAL 225


>gi|67587705|ref|XP_665270.1| RIKEN cDNA 2610011N19 gene [Cryptosporidium hominis TU502]
 gi|54655858|gb|EAL35040.1| RIKEN cDNA 2610011N19 gene [Cryptosporidium hominis]
          Length = 505

 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 164/359 (45%), Positives = 210/359 (58%), Gaps = 59/359 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDT SR+LEYLG +V+R+NHVGDWGTQFGMLI +L++++P ++   P I+DLQ FY
Sbjct: 43  STIIGDTTSRILEYLGFEVLRVNHVGDWGTQFGMLIEYLKEEYPTFVENLPEISDLQEFY 102

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K SKKRFD D  FK R+ Q VV LQ  D D   AW+ IC+VSR +FQKIYDRL V L E 
Sbjct: 103 KNSKKRFDTDPQFKLRSQQNVVKLQGGDQDALIAWKKICEVSRVEFQKIYDRLGVRLEEF 162

Query: 685 GESFYQKHMEQLVPYLEKKGNLSL------------------TKKLG------------- 713
           GES+Y   +  +V  L++KG L L                   K  G             
Sbjct: 163 GESYYNDMIPGVVKMLDEKGILKLDNGAQCVYTKINEIPLMAVKSDGGYGYDSTDLAAIH 222

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     +VY TD+GQ  HF  L + A+  G  +P+ TR+ F+GFGV+ GED KKFK
Sbjct: 223 HRLITLDADWVVYTTDMGQEEHFMKLFDVAETMGWHDPSNTRLFFIGFGVIQGEDGKKFK 282

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNR-----------------HTELTPTELSEAQQ 806
           TRSGD VKL+EL+DEG+ R+  +L D+                   H ++  + L     
Sbjct: 283 TRSGDVVKLTELIDEGVARAKKELVDRRNQRRSDQTIKSNTDVEVDHPDIDDSNLDLMAN 342

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG-INSED 864
            + +  IKY DL  NR  +Y FSFD+MLD +GNTAVYLLYAY RI +I R    I S+D
Sbjct: 343 TIGHAAIKYFDLKQNRLTNYRFSFDRMLDPKGNTAVYLLYAYARICAIFRKVEFIQSDD 401



 Score =  276 bits (706), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 143/268 (53%), Positives = 191/268 (71%), Gaps = 8/268 (2%)

Query: 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLI 391
           K  +V+VDFSSPNIAKEMHVGHLRSTIIGDT SR+LEYLG +V+R+NHVGDWGTQFGMLI
Sbjct: 19  KTPKVIVDFSSPNIAKEMHVGHLRSTIIGDTTSRILEYLGFEVLRVNHVGDWGTQFGMLI 78

Query: 392 AHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWE 451
            +L++++P ++   P I+DLQ FYK SKKRFD D  FK R+ Q VV LQ  D D   AW+
Sbjct: 79  EYLKEEYPTFVENLPEISDLQEFYKNSKKRFDTDPQFKLRSQQNVVKLQGGDQDALIAWK 138

Query: 452 MICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDR 511
            IC+VSR +FQKIYDRL V L E GES+Y   +  +V  L++KG+L+LD+G + ++ +  
Sbjct: 139 KICEVSRVEFQKIYDRLGVRLEEFGESYYNDMIPGVVKMLDEKGILKLDNGAQCVYTK-I 197

Query: 512 GSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF-RLLEESTIIG- 569
             IP+  VKSDGG+ YD++DLAAI  R+    ADW+VY TD+GQ  HF +L + +  +G 
Sbjct: 198 NEIPLMAVKSDGGYGYDSTDLAAIHHRLITLDADWVVYTTDMGQEEHFMKLFDVAETMGW 257

Query: 570 -DTISRLLEYLGHDVVRLNHVGDWGTQF 596
            D  +  L ++G  V++    G+ G +F
Sbjct: 258 HDPSNTRLFFIGFGVIQ----GEDGKKF 281



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 109/215 (50%), Gaps = 15/215 (6%)

Query: 913  GVGRGQEEVQDSLRGYGLRRSLDKLKDKNR----HTELTPTELSEAQQAVAYGCIKYADL 968
            GV R ++E+ D       RRS   +K        H ++  + L      + +  IKY DL
Sbjct: 298  GVARAKKELVDRRNQ---RRSDQTIKSNTDVEVDHPDIDDSNLDLMANTIGHAAIKYFDL 354

Query: 969  SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG-INSEDLRVAAQSTP---V 1024
              NR  +Y FSFD+MLD +GNTAVYLLYAY RI +I R    I S+D  V  Q      +
Sbjct: 355  KQNRLTNYRFSFDRMLDPKGNTAVYLLYAYARICAIFRKVEFIQSDDNMVIKQKVSNFKL 414

Query: 1025 SLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEG 1084
             + +  E  L+  LLR  +V   +  D   + L +Y Y++S +F++FY  C  I  + + 
Sbjct: 415  KISNNVERKLSIQLLRFPEVFDGILNDFFPNRLADYCYELSESFAQFYTECRIIGLEEQ- 473

Query: 1085 KIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
                +   RLLL   T +++ K  D+L + T+ K+
Sbjct: 474  ---QLEQSRLLLCFLTKQILLKGLDLLGVETLEKI 505


>gi|427731652|ref|YP_007077889.1| arginyl-tRNA synthetase [Nostoc sp. PCC 7524]
 gi|427367571|gb|AFY50292.1| arginyl-tRNA synthetase [Nostoc sp. PCC 7524]
          Length = 588

 Score =  288 bits (736), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 152/325 (46%), Positives = 213/325 (65%), Gaps = 21/325 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N A++L K    +          + IAS +  +L     ++++ +  E+A PG
Sbjct: 38  KFGDYQANVALSLSKKLGQQ---------PRVIASAIVEKL----DVSEICESPEIAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           F+N+ L   Y   Q+  I  +  +  PT     R +VDFSSPNIAKEMHVGHLRSTIIGD
Sbjct: 85  FINLKLKTAYLEAQLNAIHADSRLGVPTAKHPQREIVDFSSPNIAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESK 419
           +I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P+ LT +    I DL +FY+++K
Sbjct: 145 SIARILEFRGHDVLRLNHVGDWGTQFGMLIAYLREVYPEALTTANALDIGDLVSFYRKAK 204

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESF 479
           +RFD DE F++ A Q VV LQ    D   AW+++C+ SR++FQ IYD LN+ LTERGESF
Sbjct: 205 QRFDADEAFQETARQEVVRLQAGAEDTLHAWKLLCEQSRQEFQVIYDLLNIQLTERGESF 264

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  LEK GLL  + G K ++       +   +P+ + KSDGG+ Y T+DLAA
Sbjct: 265 YNPLLPTVVEGLEKSGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNYATTDLAA 324

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHF 559
           +  RI++++A  I+YVTD GQ  HF
Sbjct: 325 LNYRIQKDEAKRIIYVTDAGQANHF 349



 Score =  285 bits (729), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 159/348 (45%), Positives = 210/348 (60%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P+ LT +    I DL +
Sbjct: 139 STIIGDSIARILEFRGHDVLRLNHVGDWGTQFGMLIAYLREVYPEALTTANALDIGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD DE F++ A Q VV LQ    D   AW+++C+ SR++FQ IYD LN+ LT
Sbjct: 199 FYRKAKQRFDADEAFQETARQEVVRLQAGAEDTLHAWKLLCEQSRQEFQVIYDLLNIQLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  LEK G L              T + G                 
Sbjct: 259 ERGESFYNPLLPTVVEGLEKSGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF    + A+KAG + P+   +  V FG+VL
Sbjct: 319 TTDLAALNYRIQKDEAKRIIYVTDAGQANHFSQFFQVARKAGWI-PDDVELVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKD--KNRHTELTPTELSEAQQAVAYGCI 813
           GED KKFKTRSGDTV+L +LLDE + R+   L+   K    E T   +++  + V    +
Sbjct: 378 GEDGKKFKTRSGDTVRLRDLLDEAVSRAHADLETRLKAEEREETAEFINKVAEVVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  +Y+FS+DKMLD +GNTA Y+LYAY RI  I+R  GIN
Sbjct: 438 KYADLSQNRTSNYIFSYDKMLDLKGNTAPYMLYAYARIQGISRKGGIN 485



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 113/185 (61%), Gaps = 9/185 (4%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +LK + R  E T   +++  + V    +KYADLS NR  +Y+FS+DKMLD +GNTA Y+L
Sbjct: 412  RLKAEER--EETAEFINKVAEVVGISAVKYADLSQNRTSNYIFSYDKMLDLKGNTAPYML 469

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YAY RI  I+R  GIN  +L     +  V L+H+ EFALAK LL++ +V+  V  DL  +
Sbjct: 470  YAYARIQGISRKGGINFAEL---GSNAKVILQHDTEFALAKFLLQLGEVISTVEEDLLPN 526

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEK-DAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIR 1114
             LCEYLY++S  F+ FYD    +   +AE   + + T RL+L + TA+ +K    +L I 
Sbjct: 527  RLCEYLYELSKKFNVFYDRNQGVPVLNAE---EPLRTSRLVLCDLTARTLKLGLSLLGIP 583

Query: 1115 TVHKM 1119
             + +M
Sbjct: 584  VLERM 588



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 14/107 (13%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q N A++L K    +          + IAS +  +L     ++++ +  E A PG
Sbjct: 38  KFGDYQANVALSLSKKLGQQ---------PRVIASAIVEKL----DVSEICESPEIAGPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   Y   Q+  I  +  +  PT     R +VDFSSPNIA++
Sbjct: 85  FINLKLKTAYLEAQLNAIHADSRLGVPTAKHPQREIVDFSSPNIAKE 131


>gi|15835354|ref|NP_297113.1| arginyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270285526|ref|ZP_06194920.1| arginyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270289537|ref|ZP_06195839.1| arginyl-tRNA synthetase [Chlamydia muridarum Weiss]
 gi|301336923|ref|ZP_07225125.1| arginyl-tRNA synthetase [Chlamydia muridarum MopnTet14]
 gi|13878798|sp|Q9PJT8.1|SYR_CHLMU RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|7190768|gb|AAF39548.1| arginyl-tRNA synthetase [Chlamydia muridarum Nigg]
          Length = 563

 Score =  288 bits (736), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/395 (40%), Positives = 235/395 (59%), Gaps = 34/395 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           ++  +L+ + + A++ AFPEL + T  +  + +++   FG +QCNDAM L +  +     
Sbjct: 3   TLLSFLTSLCSSAIRQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARALR----- 54

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
           K+P  IA+ I + +          A     IE+A  GF+N   S+ +   Q++       
Sbjct: 55  KSPRAIAEEIVAHIP---------ATPFSSIEIAGAGFINFTFSKEFLANQLQIFSQELA 105

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
           +   ++   +V++DFSSPNIAK+MHVGHLRSTIIGD ++R   ++GHDV+RLNH+GDWGT
Sbjct: 106 KGFPVSSPQKVIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGDWGT 165

Query: 386 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445
            FGMLI +LQ+      T    + +L   YK++  RF ED  FKKR+   VVALQ  DP 
Sbjct: 166 AFGMLITYLQETAQ---TDIHQLENLTELYKKAHVRFAEDPEFKKRSQYNVVALQSGDPQ 222

Query: 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
               W+ IC VS + FQKIY  L+V L  RGESFY   +  +V  LE K L+ L DG K 
Sbjct: 223 ALALWKQICAVSEKSFQKIYSILDVELHTRGESFYNPFLADVVSDLESKNLVTLSDGAKC 282

Query: 506 MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEES 565
           ++ E+  SIP+ I KSDGG+ Y T+D+AA+R RI+++ AD I+ VTD GQ +HF+LLE +
Sbjct: 283 VFHEEF-SIPLMIQKSDGGYNYATTDVAAMRYRIQQDHADRILIVTDSGQSLHFQLLEAT 341

Query: 566 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLI 600
            +          YL H  +  +HVG     FG+++
Sbjct: 342 CLAAG-------YLPHKGI-FSHVG-----FGLVL 363



 Score =  233 bits (593), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 139/339 (41%), Positives = 184/339 (54%), Gaps = 47/339 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R   ++GHDV+RLNH+GDWGT FGMLI +LQ+      T    + +L   Y
Sbjct: 136 STIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETAQ---TDIHQLENLTELY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  DP     W+ IC VS + FQKIY  L+V L  R
Sbjct: 193 KKAHVRFAEDPEFKKRSQYNVVALQSGDPQALALWKQICAVSEKSFQKIYSILDVELHTR 252

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   +  +V  LE K  ++L+     V+                            
Sbjct: 253 GESFYNPFLADVVSDLESKNLVTLSDGAKCVFHEEFSIPLMIQKSDGGYNYATTDVAAMR 312

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD GQ +HF+LLE     AG L P+K     VGFG+VL    +KFK
Sbjct: 313 YRIQQDHADRILIVTDSGQSLHFQLLEATCLAAGYL-PHKGIFSHVGFGLVLDTQGRKFK 371

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + ++ + L++     E++  EL+     +    IKYADLS +R 
Sbjct: 372 TRSGENIKLQELLDTAIEKAKESLREHR--PEISEEELAYQGPILGINAIKYADLSAHRI 429

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
            DYVFSF+KML   GNTA+ LLYAY RI  I R   +++
Sbjct: 430 NDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMKLDT 468



 Score =  107 bits (267), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 14/189 (7%)

Query: 930  LRRSLDKLKDKNRH--TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDR 987
            L  +++K K+  R    E++  EL+     +    IKYADLS +R  DYVFSF+KML   
Sbjct: 384  LDTAIEKAKESLREHRPEISEEELAYQGPILGINAIKYADLSAHRINDYVFSFEKMLRFE 443

Query: 988  GNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLML 1047
            GNTA+ LLYAY RI  I R   +++       Q  P+S+    E  LA TLLR  +VL L
Sbjct: 444  GNTAMSLLYAYVRIQGIKRRMKLDT-----LPQKGPLSIHEPAEETLALTLLRFPEVLDL 498

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
              R+LC H L +YLY ++  F+ F+ +C+    D + +       RL L   T K ++  
Sbjct: 499  TLRELCPHFLTDYLYVLTNKFNAFFRDCHIEGSDYQQE-------RLYLCGLTEKTLETG 551

Query: 1108 FDILNIRTV 1116
              +L ++T+
Sbjct: 552  MHLLGLKTL 560



 Score = 67.0 bits (162), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 17/142 (11%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           ++  +L+ + + A++ AFPEL + T  +  + +++   FG +QCNDAM L +       +
Sbjct: 3   TLLSFLTSLCSSAIRQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARAL-----R 54

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
           K+P  IA+ I + +          A     IE A  GF+N   S+ +   Q++       
Sbjct: 55  KSPRAIAEEIVAHIP---------ATPFSSIEIAGAGFINFTFSKEFLANQLQIFSQELA 105

Query: 130 QPPTLNKKLRVLVDFSSPNIAR 151
           +   ++   +V++DFSSPNIA+
Sbjct: 106 KGFPVSSPQKVIIDFSSPNIAK 127


>gi|354565464|ref|ZP_08984639.1| Arginyl-tRNA synthetase [Fischerella sp. JSC-11]
 gi|353549423|gb|EHC18865.1| Arginyl-tRNA synthetase [Fischerella sp. JSC-11]
          Length = 585

 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/338 (47%), Positives = 218/338 (64%), Gaps = 31/338 (9%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAK 291
           VA++N K    FGD+Q N A++L K        + P  IAQ+I   +  S++   P    
Sbjct: 32  VAASNPK----FGDYQANVALSLAKRLG-----QQPRAIAQAIVDQLDVSDICKPP---- 78

Query: 292 VIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKE 348
                EVA PGF+N+ L+  Y   Q+  +  +   GV      K  R +VDFSSPNIAKE
Sbjct: 79  -----EVAGPGFINLKLTTEYLEAQLAALQADSRLGVAKAKTPK--REIVDFSSPNIAKE 131

Query: 349 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP- 407
           MHVGHLRSTIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++ +P+ LT +   
Sbjct: 132 MHVGHLRSTIIGDSIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVYPEALTTANAL 191

Query: 408 -IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 466
            I DL  FYK++KKRFDEDE F+++A Q VV LQ    D   AW+++C+ SR +FQ IYD
Sbjct: 192 DIGDLVTFYKQAKKRFDEDEAFQEQARQEVVRLQAGAADTIHAWKLLCEQSRTEFQVIYD 251

Query: 467 RLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKS 521
            L++ + ERGESFY   + ++V  LE+ GLL  D G K ++ E     +   +P+ + KS
Sbjct: 252 LLDIKVQERGESFYNPFLPKVVEDLEQTGLLVEDQGAKCVFLEGFTNKEGEPLPLIVQKS 311

Query: 522 DGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DGG+ Y T+DLAAIR RI+E+ A  I+YVTD GQ  HF
Sbjct: 312 DGGYNYATTDLAAIRYRIQEDHAKRIIYVTDAGQANHF 349



 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 156/350 (44%), Positives = 207/350 (59%), Gaps = 52/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++ +P+ LT +    I DL  
Sbjct: 139 STIIGDSIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVYPEALTTANALDIGDLVT 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++KKRFDEDE F+++A Q VV LQ    D   AW+++C+ SR +FQ IYD L++ + 
Sbjct: 199 FYKQAKKRFDEDEAFQEQARQEVVRLQAGAADTIHAWKLLCEQSRTEFQVIYDLLDIKVQ 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + ++V  LE+ G L              T K G                 
Sbjct: 259 ERGESFYNPFLPKVVEDLEQTGLLVEDQGAKCVFLEGFTNKEGEPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + A KAG + P+   +  V FG+VL
Sbjct: 319 TTDLAAIRYRIQEDHAKRIIYVTDAGQANHFAQVFQVAYKAGWV-PDDVELVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA--VAYGCI 813
           GED KKFKTRSGDTV+L +LLDE + R+   L+++        TE  +A  A  V    +
Sbjct: 378 GEDGKKFKTRSGDTVRLRDLLDEAIARARADLENRLIQEGRQETEQFKANVAKVVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NR  +YVFS+DKML  +GNTA Y+LYAY R   I+R   ++ E
Sbjct: 438 KYADLSQNRTSNYVFSYDKMLSLKGNTAPYMLYAYVRTQGISREGNVDFE 487



 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 100/164 (60%), Gaps = 8/164 (4%)

Query: 956  QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL 1015
            + V    +KYADLS NR  +YVFS+DKML  +GNTA Y+LYAY R   I+R   ++ E L
Sbjct: 430  KVVGISAVKYADLSQNRTSNYVFSYDKMLSLKGNTAPYMLYAYVRTQGISREGNVDFEKL 489

Query: 1016 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1075
               A+   + L+ + E  LAK LL++++++  V +DL  + LCEYLY +S  F++FY+NC
Sbjct: 490  GTDAK---ILLQEDTELTLAKHLLQLDEIISDVEQDLLPNRLCEYLYQLSDKFNKFYENC 546

Query: 1076 YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              ++ +     + + T RL L   TA+ +K    +L I+ + +M
Sbjct: 547  PVLKSE-----EPIRTSRLALCYLTARTLKLGLSLLGIQVLERM 585



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 24/120 (20%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAK 95
           VA++N K    FGD+Q N A++L K        + P  IAQ+I   +  S++   P    
Sbjct: 32  VAASNPK----FGDYQANVALSLAKRLG-----QQPRAIAQAIVDQLDVSDICKPP---- 78

Query: 96  VIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
                E A PGF+N+ L+  Y   Q+  +  +   GV      K  R +VDFSSPNIA++
Sbjct: 79  -----EVAGPGFINLKLTTEYLEAQLAALQADSRLGVAKAKTPK--REIVDFSSPNIAKE 131


>gi|443327031|ref|ZP_21055666.1| arginyl-tRNA synthetase [Xenococcus sp. PCC 7305]
 gi|442793320|gb|ELS02772.1| arginyl-tRNA synthetase [Xenococcus sp. PCC 7305]
          Length = 584

 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 165/367 (44%), Positives = 232/367 (63%), Gaps = 39/367 (10%)

Query: 211 LSDVFTHAVQVAF-PELGDKTAS----VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           L ++F  AV+ A     GD+ A+    VA+TN     KFGD+Q N A++L K  K     
Sbjct: 4   LRELFEIAVKDALVAAFGDELAATDPLVAATNNP---KFGDYQSNVALSLPKKLK----- 55

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII---- 321
           ++P    ++IA  + + L  N +     +  E+A PGF+N  +   Y    + +I     
Sbjct: 56  QSP----RAIAEKIIANLPANDTW----ETPEIAGPGFINFTVKPTYLAGLLTEIQGDRN 107

Query: 322 --VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
             +  V+P +     +++VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ G+DV+RLNH
Sbjct: 108 LGIEKVEPAS-----KIVVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFRGYDVLRLNH 162

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           +GDWGTQFGMLIA+L++ +P+ LT +    I DL + YK++K RFDED  FK+ A   VV
Sbjct: 163 IGDWGTQFGMLIAYLREAYPEALTTADALDIGDLVSLYKKAKIRFDEDVEFKETARNEVV 222

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
            LQ    D + AW ++C+ SRR+FQ IYD L++ LTERGESFY   +  ++  L+++GLL
Sbjct: 223 NLQAGAEDSRHAWGLLCEQSRREFQVIYDLLDINLTERGESFYNPFLPDVLAKLDEQGLL 282

Query: 498 ELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
           E D G K ++ E     D   +P+ + K+DGGF Y T+DLAAI  R+ E+ AD I+YVTD
Sbjct: 283 EEDAGAKCVFLEGFTNKDGDPLPLIVQKTDGGFNYATTDLAAINYRVAEDHADKIIYVTD 342

Query: 553 LGQGVHF 559
            GQG HF
Sbjct: 343 SGQGNHF 349



 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 159/395 (40%), Positives = 214/395 (54%), Gaps = 56/395 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD I+R+LE+ G+DV+RLNH+GDWGTQFGMLIA+L++ +P+ LT +    I DL +
Sbjct: 139 STIIGDCIARILEFRGYDVLRLNHIGDWGTQFGMLIAYLREAYPEALTTADALDIGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
            YK++K RFDED  FK+ A   VV LQ    D + AW ++C+ SRR+FQ IYD L++ LT
Sbjct: 199 LYKKAKIRFDEDVEFKETARNEVVNLQAGAEDSRHAWGLLCEQSRREFQVIYDLLDINLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  ++  L+++G L              T K G                 
Sbjct: 259 ERGESFYNPFLPDVLAKLDEQGLLEEDAGAKCVFLEGFTNKDGDPLPLIVQKTDGGFNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQG HF  + + AKK+G+L P       V FG+VL
Sbjct: 319 TTDLAAINYRVAEDHADKIIYVTDSGQGNHFAGVFQVAKKSGLL-PENVEAIHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED K+ KTRSG+T+KL  LLDE + ++   ++ +    E + T   +    Q V    +
Sbjct: 378 GEDGKRLKTRSGETIKLKSLLDEAIVQARQDIEARLEEEERSETTEFIDRVAQIVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQS 873
           KYADLS NR  DY FSF KML  +GNTA YLLYAY R   I+R   I+       +   S
Sbjct: 438 KYADLSQNRTTDYKFSFQKMLALKGNTAPYLLYAYVRPQGISRKGNIDFTKLESAEIVLS 497

Query: 874 EVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLC 908
           E  +     H     +      + +EQ L  N LC
Sbjct: 498 EEAELILAKHILQLSE----VLQEVEQELLPNRLC 528



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 97/164 (59%), Gaps = 9/164 (5%)

Query: 956  QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL 1015
            Q V    +KYADLS NR  DY FSF KML  +GNTA YLLYAY R   I+R   I+   L
Sbjct: 430  QIVGISAVKYADLSQNRTTDYKFSFQKMLALKGNTAPYLLYAYVRPQGISRKGNIDFTKL 489

Query: 1016 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1075
                +S  + L  E E  LAK +L++++VL  V ++L  + LC+YL+++S  F++FYD C
Sbjct: 490  ----ESAEIVLSEEAELILAKHILQLSEVLQEVEQELLPNRLCQYLFELSQKFNQFYDRC 545

Query: 1076 YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              I   AE +     T RL+LA+ TA+ +K    +L I  + +M
Sbjct: 546  -GILNAAEPQ----RTSRLILADLTARTLKLGLSLLGIPVLERM 584



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 32/149 (21%)

Query: 15  LSDVFTHAVQVAF-PELGDKTAS----VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           L ++F  AV+ A     GD+ A+    VA+TN     KFGD+Q N A++L K  K     
Sbjct: 4   LRELFEIAVKDALVAAFGDELAATDPLVAATNNP---KFGDYQSNVALSLPKKLK----- 55

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII---- 125
           ++P    ++IA  + + L  N +     +  E A PGF+N  +   Y    + +I     
Sbjct: 56  QSP----RAIAEKIIANLPANDTW----ETPEIAGPGFINFTVKPTYLAGLLTEIQGDRN 107

Query: 126 --VNGVQPPTLNKKLRVLVDFSSPNIARK 152
             +  V+P +     +++VDFSSPNIA++
Sbjct: 108 LGIEKVEPAS-----KIVVDFSSPNIAKE 131


>gi|298491056|ref|YP_003721233.1| arginyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298232974|gb|ADI64110.1| arginyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 585

 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 158/327 (48%), Positives = 212/327 (64%), Gaps = 25/327 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGDFQ N A++L K    +         A+ IAS +  +L     ++ +    E+A PG
Sbjct: 38  KFGDFQANVALSLSKKLGMQ---------ARVIASAIVEKL----DVSDICKPPEIAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L   Y   Q+  I  +   GV P T N + + +VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85  FINLRLQTSYLESQLNAIKTDSRLGV-PKTKNSQ-KEIVDFSSPNIAKEMHVGHLRSTII 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKE 417
           GD I+R+LE+ GH+V+RLNHVGDWGTQFGMLI +L++ +P+ LT +    I DL  FY++
Sbjct: 143 GDCIARILEFHGHEVLRLNHVGDWGTQFGMLITYLREVYPEALTTANALDIGDLVTFYRQ 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +K+RFD DE F++ A Q VV LQ    D   AW+++C+ SRR+FQ IYD LNV L ERGE
Sbjct: 203 AKQRFDADETFQETARQEVVRLQAGVEDTLHAWKLLCEQSRREFQVIYDLLNVNLIERGE 262

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDL 532
           SFY   +  +V  LEK GLLE + G K ++       +   +P+ I KSDGG+ Y T+DL
Sbjct: 263 SFYNPFLPAVVEDLEKTGLLEENQGAKCVFLDGFTNREGEPLPLIIQKSDGGYNYATTDL 322

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
           A +R RIE+++A  I+YVTD GQ  HF
Sbjct: 323 ACLRYRIEKDQAKRIIYVTDAGQANHF 349



 Score =  265 bits (678), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 154/351 (43%), Positives = 203/351 (57%), Gaps = 52/351 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD I+R+LE+ GH+V+RLNHVGDWGTQFGMLI +L++ +P+ LT +    I DL  
Sbjct: 139 STIIGDCIARILEFHGHEVLRLNHVGDWGTQFGMLITYLREVYPEALTTANALDIGDLVT 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD DE F++ A Q VV LQ    D   AW+++C+ SRR+FQ IYD LNV L 
Sbjct: 199 FYRQAKQRFDADETFQETARQEVVRLQAGVEDTLHAWKLLCEQSRREFQVIYDLLNVNLI 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  LEK G L              T + G                 
Sbjct: 259 ERGESFYNPFLPAVVEDLEKTGLLEENQGAKCVFLDGFTNREGEPLPLIIQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF    + AKKA  + P+   +  V FG+VL
Sbjct: 319 TTDLACLRYRIEKDQAKRIIYVTDAGQANHFTQFMQLAKKANWI-PDDVELVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQAVAYGCI 813
           G++RKKFKTRSGDTV+L +LLDE + R+   L+ +      E T   +    + V    +
Sbjct: 378 GDNRKKFKTRSGDTVRLRDLLDEAVSRTRADLEARLIEEGREETEEFIKNVAEVVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADLS NR  +YVFS+DKML  +GNTA Y+LYAY R   I+R   I+ E+
Sbjct: 438 KYADLSQNRTSNYVFSYDKMLALKGNTAPYMLYAYVRTQGISREGNIDFEN 488



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 103/164 (62%), Gaps = 8/164 (4%)

Query: 956  QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL 1015
            + V    +KYADLS NR  +YVFS+DKML  +GNTA Y+LYAY R   I+R   I+ E+L
Sbjct: 430  EVVGISAVKYADLSQNRTSNYVFSYDKMLALKGNTAPYMLYAYVRTQGISREGNIDFENL 489

Query: 1016 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1075
                  T + L+ + E  LAK LL++++V+  V +DL  + LC+YLY++S  F++FY+NC
Sbjct: 490  ---GTDTKILLKEDAELTLAKDLLQLDEVISEVEQDLLPNRLCDYLYNLSDKFNKFYENC 546

Query: 1076 YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              ++ +     +   T RL+L + TAK +K   D+L I+ + +M
Sbjct: 547  PVLKSE-----EPTRTSRLMLCDLTAKTLKLGLDLLGIKVLERM 585



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 18/109 (16%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGDFQ N A++L K    +         A+ IAS +  +L     ++ +    E A PG
Sbjct: 38  KFGDFQANVALSLSKKLGMQ---------ARVIASAIVEKL----DVSDICKPPEIAGPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   Y   Q+  I  +   GV P T N + + +VDFSSPNIA++
Sbjct: 85  FINLRLQTSYLESQLNAIKTDSRLGV-PKTKNSQ-KEIVDFSSPNIAKE 131


>gi|158337656|ref|YP_001518831.1| arginyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158307897|gb|ABW29514.1| arginyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 584

 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/365 (44%), Positives = 224/365 (61%), Gaps = 29/365 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           S+   L   F  A+  AF    +   SV         KFGD+Q N ++AL K        
Sbjct: 3   SILKTLETRFDRALNAAFG--AELVISVPVVGVASNPKFGDYQSNVSLALAKPLG----- 55

Query: 266 KNPFDIA-QSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
           ++P  IA Q +  +   +L   P+         +A PGF+N+ L   +  EQ++ +  + 
Sbjct: 56  QSPRGIADQILQHLEVDDLCEPPT---------IAGPGFINLTLKPTFLAEQLQQMQADP 106

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G++P  +    RV+VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ G+DV+RLNHVG
Sbjct: 107 RLGIEP--IADPQRVIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFQGNDVLRLNHVG 164

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           DWGTQFGMLI +L +  P  LT S    + DL AFYK++K+RFDEDE F+ ++   VV L
Sbjct: 165 DWGTQFGMLITYLSEVHPAALTTSDALDLGDLVAFYKKAKQRFDEDEDFQVQSRNAVVKL 224

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q+ D +  +AW+++CD SRR+F+KIY  L++ LTERGESFY   +  ++  L+K GLLE 
Sbjct: 225 QQGDSEATQAWQLLCDQSRREFEKIYRDLDIELTERGESFYNPFLADVLTDLDKAGLLET 284

Query: 500 DDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLG 554
           D G + ++ E   +      P+ + KSDGGF Y T+DLAA+R RI  E A  ++Y+TD G
Sbjct: 285 DQGAQCVFLEGFTNKQGDPQPLIVQKSDGGFNYATTDLAALRHRITAESAQRLIYITDAG 344

Query: 555 QGVHF 559
           Q  HF
Sbjct: 345 QANHF 349



 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 148/350 (42%), Positives = 209/350 (59%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+ G+DV+RLNHVGDWGTQFGMLI +L +  P  LT S  +   DL A
Sbjct: 139 STIIGDCIARILEFQGNDVLRLNHVGDWGTQFGMLITYLSEVHPAALTTSDALDLGDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K+RFDEDE F+ ++   VV LQ+ D +  +AW+++CD SRR+F+KIY  L++ LT
Sbjct: 199 FYKKAKQRFDEDEDFQVQSRNAVVKLQQGDSEATQAWQLLCDQSRREFEKIYRDLDIELT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  ++  L+K G L              T K G                 
Sbjct: 259 ERGESFYNPFLADVLTDLDKAGLLETDQGAQCVFLEGFTNKQGDPQPLIVQKSDGGFNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++Y+TD GQ  HF  + + A++A  + P   ++  + FG+V 
Sbjct: 319 TTDLAALRHRITAESAQRLIYITDAGQANHFAQVFQVARRAQWM-PETIQVVHMPFGLVQ 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSL----DKLKDKNRHTELTPTELSEAQQAVAYG 811
           GED KK KTRSG T++L +LLDE + R+      +L +++R TE +P  ++ A Q +  G
Sbjct: 378 GEDGKKLKTRSGKTIRLRDLLDEAVTRAQTDIETRLAEEDR-TE-SPDFIANAAQVIGLG 435

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            +KYADLS NR  +YVFS+DKML  +GNTA Y+LYAY R+  I+R   I+
Sbjct: 436 AVKYADLSQNRTSNYVFSYDKMLALQGNTAPYMLYAYVRVQGISRKGKID 485



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 109/184 (59%), Gaps = 11/184 (5%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +L +++R TE +P  ++ A Q +  G +KYADLS NR  +YVFS+DKML  +GNTA Y+L
Sbjct: 412  RLAEEDR-TE-SPDFIANAAQVIGLGAVKYADLSQNRTSNYVFSYDKMLALQGNTAPYML 469

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YAY R+  I+R   I+   L        + +    E ALAK LL+M D+L  V  DL  +
Sbjct: 470  YAYVRVQGISRKGKIDFSQL----DDVSLIIAEPSELALAKHLLQMQDILSEVAADLLPN 525

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1115
             LC+YL+++S  F++FYD C  +  +   +     T RL+L++ TA+ +K    +L I  
Sbjct: 526  RLCQYLFELSQKFNQFYDQCPVLNAEEPAR-----TSRLVLSDLTARTLKLGLSLLGIEV 580

Query: 1116 VHKM 1119
            + +M
Sbjct: 581  LERM 584



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 22/147 (14%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+   L   F  A+  AF    +   SV         KFGD+Q N ++AL K        
Sbjct: 3   SILKTLETRFDRALNAAFG--AELVISVPVVGVASNPKFGDYQSNVSLALAKPLG----- 55

Query: 70  KNPFDIA-QSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
           ++P  IA Q +  +   +L   P++A          PGF+N+ L   +  EQ++ +  + 
Sbjct: 56  QSPRGIADQILQHLEVDDLCEPPTIAG---------PGFINLTLKPTFLAEQLQQMQADP 106

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             G++P  +    RV+VDFSSPNIA++
Sbjct: 107 RLGIEP--IADPQRVIVDFSSPNIAKE 131


>gi|329942490|ref|ZP_08291300.1| arginyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|332287127|ref|YP_004422028.1| arginyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|384450273|ref|YP_005662873.1| arginyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|384451278|ref|YP_005663876.1| arginyl-tRNA synthetase [Chlamydophila psittaci 01DC11]
 gi|384452254|ref|YP_005664851.1| arginyl-tRNA synthetase [Chlamydophila psittaci 08DC60]
 gi|384453228|ref|YP_005665824.1| arginyl-tRNA synthetase [Chlamydophila psittaci C19/98]
 gi|384454206|ref|YP_005666801.1| arginyl-tRNA synthetase [Chlamydophila psittaci 02DC15]
 gi|392376380|ref|YP_004064158.1| putative arginyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|406591992|ref|YP_006739172.1| arginyl-tRNA synthetase [Chlamydia psittaci CP3]
 gi|406593104|ref|YP_006740283.1| arginyl-tRNA synthetase [Chlamydia psittaci NJ1]
 gi|406594513|ref|YP_006741324.1| arginyl-tRNA synthetase [Chlamydia psittaci MN]
 gi|407453663|ref|YP_006732771.1| arginyl-tRNA synthetase [Chlamydia psittaci 84/55]
 gi|407454994|ref|YP_006733885.1| arginyl-tRNA synthetase [Chlamydia psittaci GR9]
 gi|407457727|ref|YP_006736032.1| arginyl-tRNA synthetase [Chlamydia psittaci WS/RT/E30]
 gi|407460344|ref|YP_006738119.1| arginyl-tRNA synthetase [Chlamydia psittaci WC]
 gi|410858157|ref|YP_006974097.1| putative arginyl-tRNA synthetase [Chlamydia psittaci 01DC12]
 gi|449070821|ref|YP_007437901.1| arginyl-tRNA synthetase [Chlamydophila psittaci Mat116]
 gi|313847723|emb|CBY16713.1| putative arginyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325506631|gb|ADZ18269.1| arginyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328815400|gb|EGF85388.1| arginyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|328914367|gb|AEB55200.1| arginyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|334692009|gb|AEG85228.1| arginyl-tRNA synthetase [Chlamydophila psittaci C19/98]
 gi|334692988|gb|AEG86206.1| arginyl-tRNA synthetase [Chlamydophila psittaci 01DC11]
 gi|334693963|gb|AEG87180.1| arginyl-tRNA synthetase [Chlamydophila psittaci 02DC15]
 gi|334694943|gb|AEG88159.1| arginyl-tRNA synthetase [Chlamydophila psittaci 08DC60]
 gi|405780422|gb|AFS19172.1| arginyl-tRNA synthetase [Chlamydia psittaci 84/55]
 gi|405781537|gb|AFS20286.1| arginyl-tRNA synthetase [Chlamydia psittaci GR9]
 gi|405782945|gb|AFS21693.1| arginyl-tRNA synthetase [Chlamydia psittaci MN]
 gi|405785547|gb|AFS24293.1| arginyl-tRNA synthetase [Chlamydia psittaci WS/RT/E30]
 gi|405787372|gb|AFS26116.1| arginyl-tRNA synthetase [Chlamydia psittaci WC]
 gi|405787864|gb|AFS26607.1| arginyl-tRNA synthetase [Chlamydia psittaci CP3]
 gi|405788976|gb|AFS27718.1| arginyl-tRNA synthetase [Chlamydia psittaci NJ1]
 gi|410811052|emb|CCO01695.1| putative arginyl-tRNA synthetase [Chlamydia psittaci 01DC12]
 gi|449039329|gb|AGE74753.1| arginyl-tRNA synthetase [Chlamydophila psittaci Mat116]
          Length = 562

 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/403 (39%), Positives = 240/403 (59%), Gaps = 34/403 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++  YLS +   A+  AFP++   +  +  + ++    FG +QCNDAM L +  K    
Sbjct: 1   MTLLSYLSSLCREAILSAFPQIETISPDITQSTKEL---FGHYQCNDAMKLARTLK---- 53

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P  IA+SI + ++               IE+A  GF+N   S+ +    ++    + 
Sbjct: 54  -MPPRAIAESIVNHISK---------NSFSSIEIAGAGFINFTFSKEFLNLSLQSYSQDL 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                +    +V++DFSSPNIAK+MHVGHLRSTIIGD ++R+  ++G+DV+RLNH+GDWG
Sbjct: 104 SSGFRVKDPKKVVIDFSSPNIAKDMHVGHLRSTIIGDCLARIFTFVGNDVLRLNHIGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           T FGMLI +LQ++  + +     + DL   YK++  RF ED  FKKR+   VVALQ  DP
Sbjct: 164 TAFGMLITYLQEESSEDIEN---LEDLTILYKKAHARFAEDAEFKKRSQTNVVALQSGDP 220

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
             +K WE IC++S R FQKIY+ L++++ +RGESFY   + +++  LEKK L+ + D  K
Sbjct: 221 KARKLWERICEISERAFQKIYNILDISIEKRGESFYNPFLPEIIKDLEKKNLITISDNAK 280

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
            ++ E   SIP+ + KSDGG+ Y T+DLAA+R R+E + AD I+ VTD+GQ +HF+LLE 
Sbjct: 281 CVFHEGF-SIPLMVQKSDGGYNYATTDLAAMRYRVEHDHADKIIIVTDMGQSLHFQLLEA 339

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           + +          YL +  V  +HVG     FG+++     KF
Sbjct: 340 TALAAG-------YLPNKEV-FSHVG-----FGLVLDSEGKKF 369



 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 143/337 (42%), Positives = 200/337 (59%), Gaps = 47/337 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+  ++G+DV+RLNH+GDWGT FGMLI +LQ++  + +     + DL   Y
Sbjct: 135 STIIGDCLARIFTFVGNDVLRLNHIGDWGTAFGMLITYLQEESSEDIEN---LEDLTILY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  DP  +K WE IC++S R FQKIY+ L++++ +R
Sbjct: 192 KKAHARFAEDAEFKKRSQTNVVALQSGDPKARKLWERICEISERAFQKIYNILDISIEKR 251

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + +++  LEKK  ++++     V+                            
Sbjct: 252 GESFYNPFLPEIIKDLEKKNLITISDNAKCVFHEGFSIPLMVQKSDGGYNYATTDLAAMR 311

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD+GQ +HF+LLE  A  AG L PNK     VGFG+VL  + KKFK
Sbjct: 312 YRVEHDHADKIIIVTDMGQSLHFQLLEATALAAGYL-PNKEVFSHVGFGLVLDSEGKKFK 370

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + +++  LK K+R  E++  E++E    +    IKYADLS +R 
Sbjct: 371 TRSGENIKLQELLDMAIDQAVATLK-KHR-PEMSEAEIAERAPVLGINAIKYADLSSHRV 428

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            DYVFSF+KML   GNTA+++LY Y RI  I R  GI
Sbjct: 429 SDYVFSFEKMLRFEGNTAMFILYGYVRIQGIKRRLGI 465



 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K    E++  E++E    +    IKYADLS +R  DYVFSF+KML   GNTA+++LY Y 
Sbjct: 395  KKHRPEMSEAEIAERAPVLGINAIKYADLSSHRVSDYVFSFEKMLRFEGNTAMFILYGYV 454

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI  I R  GI     +++ +ST   ++   E ALA  LLR  + + L  ++LC H L +
Sbjct: 455  RIQGIKRRLGIE----KLSLEST-ADIQEPSEEALALALLRFPEAIDLTLKELCPHFLTD 509

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++  F  F+ +C+ IE     K       RL L     K +     +L ++T+ ++
Sbjct: 510  YLYMLTNKFHAFFRDCH-IEGSPHQK------ARLYLCALVEKTLATGMHLLGLQTLDRL 562



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++  YLS +   A+  AFP++   +  +  + ++    FG +QCNDAM L +       
Sbjct: 1   MTLLSYLSSLCREAILSAFPQIETISPDITQSTKEL---FGHYQCNDAMKLARTL----- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K  P  IA+SI + ++               IE A  GF+N   S+ +    ++    + 
Sbjct: 53  KMPPRAIAESIVNHISK---------NSFSSIEIAGAGFINFTFSKEFLNLSLQSYSQDL 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIAR 151
                +    +V++DFSSPNIA+
Sbjct: 104 SSGFRVKDPKKVVIDFSSPNIAK 126


>gi|407456364|ref|YP_006734937.1| arginyl-tRNA synthetase [Chlamydia psittaci VS225]
 gi|405783625|gb|AFS22372.1| arginyl-tRNA synthetase [Chlamydia psittaci VS225]
          Length = 469

 Score =  287 bits (734), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 159/403 (39%), Positives = 240/403 (59%), Gaps = 34/403 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++  YLS +   A+  AFP++   +  +  + ++    FG +QCNDAM L +  K    
Sbjct: 1   MTLLSYLSSLCREAILSAFPQIETISPDITQSTKEL---FGHYQCNDAMKLARTLK---- 53

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P  IA+SI + ++               IE+A  GF+N   S+ +    ++    + 
Sbjct: 54  -MPPRAIAESIVNHISK---------NSFSSIEIAGAGFINFTFSKEFLNLSLQSYSQDL 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                +    +V++DFSSPNIAK+MHVGHLRSTIIGD ++R+  ++G+DV+RLNH+GDWG
Sbjct: 104 SSGFRVKDPKKVVIDFSSPNIAKDMHVGHLRSTIIGDCLARIFTFVGNDVLRLNHIGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           T FGMLI +LQ++  + +     + DL   YK++  RF ED  FKKR+   VVALQ  DP
Sbjct: 164 TAFGMLITYLQEESSEDIEN---LEDLTILYKKAHARFAEDAEFKKRSQTNVVALQSGDP 220

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
             +K WE IC++S R FQKIY+ L++++ +RGESFY   + +++  LEKK L+ + D  K
Sbjct: 221 KARKLWERICEISERAFQKIYNILDISIGKRGESFYNPFLPEIIKDLEKKNLITISDNAK 280

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
            ++ E   SIP+ + KSDGG+ Y T+DLAA+R R+E + AD I+ VTD+GQ +HF+LLE 
Sbjct: 281 CVFHEGF-SIPLMVQKSDGGYNYATTDLAAMRYRVEHDHADKIIIVTDMGQSLHFQLLEA 339

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           + +          YL +  V  +HVG     FG+++     KF
Sbjct: 340 TALAAG-------YLPNKEV-FSHVG-----FGLVLDSEGKKF 369



 Score =  258 bits (660), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 145/337 (43%), Positives = 202/337 (59%), Gaps = 47/337 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+  ++G+DV+RLNH+GDWGT FGMLI +LQ++  + +     + DL   Y
Sbjct: 135 STIIGDCLARIFTFVGNDVLRLNHIGDWGTAFGMLITYLQEESSEDIEN---LEDLTILY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  DP  +K WE IC++S R FQKIY+ L++++ +R
Sbjct: 192 KKAHARFAEDAEFKKRSQTNVVALQSGDPKARKLWERICEISERAFQKIYNILDISIGKR 251

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLT------------------KKLG------------- 713
           GESFY   + +++  LEKK  ++++                  K  G             
Sbjct: 252 GESFYNPFLPEIIKDLEKKNLITISDNAKCVFHEGFSIPLMVQKSDGGYNYATTDLAAMR 311

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+ VTD+GQ +HF+LLE  A  AG L PNK     VGFG+VL  + KKFK
Sbjct: 312 YRVEHDHADKIIIVTDMGQSLHFQLLEATALAAGYL-PNKEVFSHVGFGLVLDSEGKKFK 370

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + +++  LK K+R  E++  E++E    +    IKYADLS +R 
Sbjct: 371 TRSGENIKLQELLDMAIDQAVATLK-KHR-PEMSEAEIAERAPVLGINAIKYADLSSHRV 428

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            DYVFSF+KML   GNTA+++LY Y RI  I R  GI
Sbjct: 429 SDYVFSFEKMLRFEGNTAMFILYGYVRIQGIKRRLGI 465



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 44/71 (61%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K    E++  E++E    +    IKYADLS +R  DYVFSF+KML   GNTA+++LY Y 
Sbjct: 395  KKHRPEMSEAEIAERAPVLGINAIKYADLSSHRVSDYVFSFEKMLRFEGNTAMFILYGYV 454

Query: 1000 RIASIARTAGI 1010
            RI  I R  GI
Sbjct: 455  RIQGIKRRLGI 465



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++  YLS +   A+  AFP++   +  +  + ++    FG +QCNDAM L +       
Sbjct: 1   MTLLSYLSSLCREAILSAFPQIETISPDITQSTKEL---FGHYQCNDAMKLARTL----- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K  P  IA+SI + ++               IE A  GF+N   S+ +    ++    + 
Sbjct: 53  KMPPRAIAESIVNHISK---------NSFSSIEIAGAGFINFTFSKEFLNLSLQSYSQDL 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIAR 151
                +    +V++DFSSPNIA+
Sbjct: 104 SSGFRVKDPKKVVIDFSSPNIAK 126


>gi|116074027|ref|ZP_01471289.1| arginyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116069332|gb|EAU75084.1| arginyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 595

 Score =  287 bits (734), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 158/359 (44%), Positives = 217/359 (60%), Gaps = 28/359 (7%)

Query: 218 AVQVAFPELGDKTASVA---STNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQS 274
           A+Q AFPE  + T               +FGDFQ N A+ L K  K            + 
Sbjct: 15  ALQRAFPEAWEATEGAGLDPQLAPASKPEFGDFQANGALPLAKPLKQA---------PRQ 65

Query: 275 IASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPTLN 331
           IA+ +  +L  +P+   +  + ++A PGF+N+ +       ++   + +   GV  P + 
Sbjct: 66  IATAIVEQLQADPAFTDLCLEPQIAGPGFINLTIRPEQLAAEVASRLGDPRLGV--PAVE 123

Query: 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLI 391
               V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI
Sbjct: 124 NAAPVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLI 183

Query: 392 AHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA 449
            HL+   P+ L  +  +   DL AFY+E+KKRFD+DE F+  +   VV LQ  DP   KA
Sbjct: 184 THLKQVAPEALQTADAVDLGDLVAFYREAKKRFDDDEAFQSTSRDEVVKLQGGDPVSLKA 243

Query: 450 WEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-- 507
           W ++CD SRR+FQKIYDRL++ L+ERGESFY   +  ++  L+   LL  DDG + ++  
Sbjct: 244 WGLLCDQSRREFQKIYDRLDIRLSERGESFYNPFLPAVIDGLKDAELLVTDDGAQCVFLE 303

Query: 508 ---GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI----EEEKADWIVYVTDLGQGVHF 559
              G+D   +P+ + KSDGGF Y T+DLAAIR R     + + A  +VYVTD GQ  HF
Sbjct: 304 GVQGKDGKPLPVIVQKSDGGFNYATTDLAAIRYRFGAAPDGDGAKRVVYVTDAGQANHF 362



 Score =  259 bits (662), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 149/350 (42%), Positives = 200/350 (57%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL A
Sbjct: 148 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALQTADAVDLGDLVA 207

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFD+DE F+  +   VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+
Sbjct: 208 FYREAKKRFDDDEAFQSTSRDEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLS 267

Query: 683 ERGESFYQKHMEQLV-------------------------------PYLEKKGN------ 705
           ERGESFY   +  ++                               P + +K +      
Sbjct: 268 ERGESFYNPFLPAVIDGLKDAELLVTDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYA 327

Query: 706 ----LSLTKKLG----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                ++  + G          +VYVTD GQ  HF  + + A++AG + P  +R++ V F
Sbjct: 328 TTDLAAIRYRFGAAPDGDGAKRVVYVTDAGQANHFAGVFQVAERAGWI-PEGSRLEHVPF 386

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS-LDKLKDKNRHTELTPTE-LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L +LLDE + R+  D     +        E +      V 
Sbjct: 387 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERAEADLRSRLSEEERSESKEFIGHVATTVG 446

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 447 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 496



 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 87/162 (53%), Gaps = 11/162 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G    DL V
Sbjct: 445  VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLEV 500

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
                  +     +E+AL + LL+ + V+  V  +L  + LC YL+++S  F+ FYD    
Sbjct: 501  LGAQ--LQFSEPQEWALVRELLKFDAVIAEVEEELLPNRLCSYLFELSQVFNRFYDQVPV 558

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ D E         RL L   TA  +K    +L I T+ +M
Sbjct: 559  LKADPE-----ALPSRLALCRLTADTLKAGLGLLGIATLERM 595



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 13/135 (9%)

Query: 22  AVQVAFPELGDKTASVA---STNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQS 78
           A+Q AFPE  + T               +FGDFQ N A+ L K  K            + 
Sbjct: 15  ALQRAFPEAWEATEGAGLDPQLAPASKPEFGDFQANGALPLAKPLKQA---------PRQ 65

Query: 79  IASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-SRVYAGEQMKDIIVNGVQPPTLNKK 137
           IA+ +  +L  +P+   +  + + A PGF+N+ +     A E    +    +  P +   
Sbjct: 66  IATAIVEQLQADPAFTDLCLEPQIAGPGFINLTIRPEQLAAEVASRLGDPRLGVPAVENA 125

Query: 138 LRVLVDFSSPNIARK 152
             V+VDFSSPNIA++
Sbjct: 126 APVVVDFSSPNIAKE 140


>gi|407458974|ref|YP_006737077.1| arginyl-tRNA synthetase [Chlamydia psittaci M56]
 gi|405786535|gb|AFS25280.1| arginyl-tRNA synthetase [Chlamydia psittaci M56]
          Length = 562

 Score =  286 bits (733), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 159/403 (39%), Positives = 240/403 (59%), Gaps = 34/403 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++  YLS +   A+  AFP++   +  +  + ++    FG +QCNDAM L +  K    
Sbjct: 1   MTLLSYLSSLCREAILSAFPQIETISPDITQSTKEL---FGHYQCNDAMKLARTLK---- 53

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P  IA+SI + ++               IE+A  GF+N   S+ +    ++    + 
Sbjct: 54  -MPPRAIAESIVNHISK---------NSFSSIEIAGAGFINFTFSKEFLNLSLQSYSQDL 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                +    +V++DFSSPNIAK+MHVGHLRSTIIGD ++R+  ++G+DV+RLNH+GDWG
Sbjct: 104 SSGFRVKDPKKVVIDFSSPNIAKDMHVGHLRSTIIGDCLARIFTFVGNDVLRLNHIGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           T FGMLI +LQ++  + +     + DL   YK++  RF ED  FKKR+   VVALQ  DP
Sbjct: 164 TAFGMLITYLQEESSEDIEN---LEDLTILYKKAHARFAEDAEFKKRSQTNVVALQSGDP 220

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
             +K WE IC++S R FQKIY+ L++++ +RGESFY   + +++  LEKK L+ + D  K
Sbjct: 221 KARKLWERICEISERAFQKIYNILDISIEKRGESFYNPFLPEIIKDLEKKNLITISDNAK 280

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
            ++ E   SIP+ + KSDGG+ Y T+DLAA+R R+E + AD I+ VTD+GQ +HF+LLE 
Sbjct: 281 CVFHEGF-SIPLMVQKSDGGYNYATTDLAAMRYRVEHDHADKIMIVTDMGQSLHFQLLEA 339

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           + +          YL +  V  +HVG     FG+++     KF
Sbjct: 340 TALAAG-------YLPNKEV-FSHVG-----FGLVLDSEGKKF 369



 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/337 (42%), Positives = 200/337 (59%), Gaps = 47/337 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+  ++G+DV+RLNH+GDWGT FGMLI +LQ++  + +     + DL   Y
Sbjct: 135 STIIGDCLARIFTFVGNDVLRLNHIGDWGTAFGMLITYLQEESSEDIEN---LEDLTILY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  DP  +K WE IC++S R FQKIY+ L++++ +R
Sbjct: 192 KKAHARFAEDAEFKKRSQTNVVALQSGDPKARKLWERICEISERAFQKIYNILDISIEKR 251

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + +++  LEKK  ++++     V+                            
Sbjct: 252 GESFYNPFLPEIIKDLEKKNLITISDNAKCVFHEGFSIPLMVQKSDGGYNYATTDLAAMR 311

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD+GQ +HF+LLE  A  AG L PNK     VGFG+VL  + KKFK
Sbjct: 312 YRVEHDHADKIMIVTDMGQSLHFQLLEATALAAGYL-PNKEVFSHVGFGLVLDSEGKKFK 370

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + +++  LK K+R  E++  E++E    +    IKYADLS +R 
Sbjct: 371 TRSGENIKLQELLDMAIDQAVATLK-KHR-PEMSEAEIAERAPVLGINAIKYADLSSHRV 428

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            DYVFSF+KML   GNTA+++LY Y RI  I R  GI
Sbjct: 429 SDYVFSFEKMLRFEGNTAMFILYGYVRIQGIKRRLGI 465



 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K    E++  E++E    +    IKYADLS +R  DYVFSF+KML   GNTA+++LY Y 
Sbjct: 395  KKHRPEMSEAEIAERAPVLGINAIKYADLSSHRVSDYVFSFEKMLRFEGNTAMFILYGYV 454

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI  I R  GI     +++ +ST   ++   E ALA  LLR  + + L  ++LC H L +
Sbjct: 455  RIQGIKRRLGIE----KLSLEST-ADIQEPSEEALALALLRFPEAIDLTLKELCPHFLTD 509

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++  F  F+ +C+ IE     K       RL L     K +     +L ++T+ ++
Sbjct: 510  YLYMLTNKFHTFFRDCH-IEGSPHQK------ARLYLCALVEKTLATGMHLLGLQTLDRL 562



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 17/143 (11%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++  YLS +   A+  AFP++   +  +  + ++    FG +QCNDAM L +       
Sbjct: 1   MTLLSYLSSLCREAILSAFPQIETISPDITQSTKEL---FGHYQCNDAMKLARTL----- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K  P  IA+SI + ++               IE A  GF+N   S+ +    ++    + 
Sbjct: 53  KMPPRAIAESIVNHISK---------NSFSSIEIAGAGFINFTFSKEFLNLSLQSYSQDL 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIAR 151
                +    +V++DFSSPNIA+
Sbjct: 104 SSGFRVKDPKKVVIDFSSPNIAK 126


>gi|414077064|ref|YP_006996382.1| arginyl-tRNA synthetase [Anabaena sp. 90]
 gi|9715730|emb|CAC01600.1| putative arginyl-tRNA synthetase [Anabaena circinalis 90]
 gi|413970480|gb|AFW94569.1| arginyl-tRNA synthetase [Anabaena sp. 90]
          Length = 585

 Score =  286 bits (733), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 150/325 (46%), Positives = 209/325 (64%), Gaps = 21/325 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N A++L K        K P         ++  E+ +   ++ + +  E+A PG
Sbjct: 38  KFGDYQANVALSLSKKLG-----KQP--------RIIAGEIVSKLDVSDICEPPEIAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           F+N+ L   Y   Q+  I ++  +  PT     + +VDFSSPNIAKEMHVGHLRSTIIGD
Sbjct: 85  FINLKLQTSYLEAQLNAIQIDARLGIPTATNPQKQIVDFSSPNIAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESK 419
           +I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++ +PD LT +    I DL  FY+++K
Sbjct: 145 SIARILEFCGHDVLRLNHVGDWGTQFGMLITYLREVYPDALTTANALDIGDLVNFYRKAK 204

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESF 479
           +RFDED +F++ + Q VV LQ    D   AW+++C+ SR++FQ IYD LNV L ERGESF
Sbjct: 205 QRFDEDPVFQETSRQEVVRLQAGAEDTLHAWKLLCEQSRQEFQIIYDLLNVELIERGESF 264

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + ++V  L   GLLE   G K ++       +   +P+ + K+DGG+ Y T+DLAA
Sbjct: 265 YNPLLPKVVENLATTGLLESSQGAKCVFLDGFTNREGNPLPLIVQKTDGGYNYATTDLAA 324

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHF 559
           +  RI+E+KA  IVYVTD GQ  HF
Sbjct: 325 LGYRIQEDKAKRIVYVTDEGQSNHF 349



 Score =  273 bits (699), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 155/348 (44%), Positives = 204/348 (58%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++ +PD LT +    I DL  
Sbjct: 139 STIIGDSIARILEFCGHDVLRLNHVGDWGTQFGMLITYLREVYPDALTTANALDIGDLVN 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFDED +F++ + Q VV LQ    D   AW+++C+ SR++FQ IYD LNV L 
Sbjct: 199 FYRKAKQRFDEDPVFQETSRQEVVRLQAGAEDTLHAWKLLCEQSRQEFQIIYDLLNVELI 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + ++V  L   G L              T + G                 
Sbjct: 259 ERGESFYNPLLPKVVENLATTGLLESSQGAKCVFLDGFTNREGNPLPLIVQKTDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             IVYVTD GQ  HF    + A+KA  + P    +  V FG+VL
Sbjct: 319 TTDLAALGYRIQEDKAKRIVYVTDEGQSNHFAQFFQVARKANWI-PEDVELVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KKFKTRSGDTV+L +LLDE + R+   ++++ +  E T TE  +    + V    +
Sbjct: 378 GEDGKKFKTRSGDTVRLRDLLDEAINRARADIENRLQEDERTETEEFMQNVAEVVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR   YVFS+DKML  +GNTA YLLYAY RI  I+R   I+
Sbjct: 438 KYADLSQNRTSSYVFSYDKMLSLKGNTAPYLLYAYVRIQGISRQGNID 485



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 114/193 (59%), Gaps = 10/193 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
             + R+   ++++ +  E T TE  +    + V    +KYADLS NR   YVFS+DKML  
Sbjct: 401  AINRARADIENRLQEDERTETEEFMQNVAEVVGISAVKYADLSQNRTSSYVFSYDKMLSL 460

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
            +GNTA YLLYAY RI  I+R   I+  +L +  Q   + L+ + E  LAK LL++++V+ 
Sbjct: 461  KGNTAPYLLYAYVRIQGISRQGNIDFTNLGINRQ---ILLKEDAELTLAKHLLQLDEVIK 517

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             V +DL  + LC+YLY +S  F++FY+NC  ++ +   +     T RL+L + TAK +K 
Sbjct: 518  EVEQDLLPNRLCDYLYQLSDKFNKFYENCPVLKSEEPAR-----TSRLMLCDLTAKTLKL 572

Query: 1107 CFDILNIRTVHKM 1119
               +L I+ + +M
Sbjct: 573  GLSLLGIKVLERM 585



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 14/107 (13%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q N A++L K        K P         ++  E+ +   ++ + +  E A PG
Sbjct: 38  KFGDYQANVALSLSKKLG-----KQP--------RIIAGEIVSKLDVSDICEPPEIAGPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   Y   Q+  I ++  +  PT     + +VDFSSPNIA++
Sbjct: 85  FINLKLQTSYLEAQLNAIQIDARLGIPTATNPQKQIVDFSSPNIAKE 131


>gi|424824862|ref|ZP_18249849.1| arginyl-tRNA synthetase [Chlamydophila abortus LLG]
 gi|333409961|gb|EGK68948.1| arginyl-tRNA synthetase [Chlamydophila abortus LLG]
          Length = 562

 Score =  286 bits (733), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 163/408 (39%), Positives = 242/408 (59%), Gaps = 44/408 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++  YLS +   A+  AFP++   +  +  + ++    FG +QCNDAM L +  K    
Sbjct: 1   MTLLSYLSSLCREAILSAFPQIETISPDITQSTKEL---FGHYQCNDAMKLARTLK---- 53

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---I 321
              P  IA+SI   ++               IE+A  GF+N   S+ +    ++     +
Sbjct: 54  -MPPRAIAESIVKQISK---------NNFSSIEIAGAGFINFTFSKEFLNLSLQSYSRDL 103

Query: 322 VNG--VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
            +G  VQ P      +V++DFSSPNIAK+MHVGHLRSTIIGD ++R+  ++GHDV+RLNH
Sbjct: 104 SSGFRVQDPK-----KVVIDFSSPNIAKDMHVGHLRSTIIGDCLARIFTFVGHDVLRLNH 158

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           +GDWGT FGMLI +LQ++  + +     + DL   YK++  RF ED  FKKR+   VVAL
Sbjct: 159 IGDWGTAFGMLITYLQEESSEDIES---LEDLTILYKKAHARFAEDAEFKKRSQTNVVAL 215

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  DP  +K WE IC++S R FQKIY+ L++ + +RGESFY   + +++  LEKK L+ +
Sbjct: 216 QSGDPKTRKLWERICEISERAFQKIYNILDIQIEKRGESFYNPFLPEIIEDLEKKNLITV 275

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
            D  K ++ E   SIP+ + K DGG+ Y T+DLAA+R R+E++ AD I+ VTD+GQ +HF
Sbjct: 276 SDEAKCVFHEG-FSIPLMVQKRDGGYNYATTDLAAMRYRVEQDHADRIIIVTDMGQSLHF 334

Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +LLE + +          YL +  V  +HVG     FG+++     KF
Sbjct: 335 QLLEATALAAG-------YLPNKDV-FSHVG-----FGLVLDSEGKKF 369



 Score =  260 bits (665), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 146/337 (43%), Positives = 202/337 (59%), Gaps = 47/337 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+  ++GHDV+RLNH+GDWGT FGMLI +LQ++  + +     + DL   Y
Sbjct: 135 STIIGDCLARIFTFVGHDVLRLNHIGDWGTAFGMLITYLQEESSEDIES---LEDLTILY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  DP  +K WE IC++S R FQKIY+ L++ + +R
Sbjct: 192 KKAHARFAEDAEFKKRSQTNVVALQSGDPKTRKLWERICEISERAFQKIYNILDIQIEKR 251

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLT------------------KKLG------------- 713
           GESFY   + +++  LEKK  ++++                  K+ G             
Sbjct: 252 GESFYNPFLPEIIEDLEKKNLITVSDEAKCVFHEGFSIPLMVQKRDGGYNYATTDLAAMR 311

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+ VTD+GQ +HF+LLE  A  AG L PNK     VGFG+VL  + KKFK
Sbjct: 312 YRVEQDHADRIIIVTDMGQSLHFQLLEATALAAGYL-PNKDVFSHVGFGLVLDSEGKKFK 370

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + +++  LK K+R  E++  E++E    +    IKYADLS +R 
Sbjct: 371 TRSGENIKLQELLDTAIDQAVATLK-KHR-PEMSDAEITERAPVLGMNAIKYADLSSHRV 428

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            DYVFSF+KML   GNTA+++LY Y RI  I R  GI
Sbjct: 429 SDYVFSFEKMLRFEGNTAMFILYGYVRIQGIKRRLGI 465



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K    E++  E++E    +    IKYADLS +R  DYVFSF+KML   GNTA+++LY Y 
Sbjct: 395  KKHRPEMSDAEITERAPVLGMNAIKYADLSSHRVSDYVFSFEKMLRFEGNTAMFILYGYV 454

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI  I R  GI    L  AA     +++   E ALA  LLR  + + +  ++LC H L +
Sbjct: 455  RIQGIKRRLGIEKLSLESAA-----NIQEPSEEALALALLRFPEAIDITLKELCPHFLTD 509

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++  F  F+ +C+ IE     K       RL L     K +     +L ++T+ ++
Sbjct: 510  YLYMLTNKFHAFFRDCH-IEGSPHQK------ERLYLCALVEKTLATGMHLLGLQTLDRL 562



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 27/148 (18%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++  YLS +   A+  AFP++   +  +  + ++    FG +QCNDAM L +       
Sbjct: 1   MTLLSYLSSLCREAILSAFPQIETISPDITQSTKEL---FGHYQCNDAMKLARTL----- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---I 125
           K  P  IA+SI   ++               IE A  GF+N   S+ +    ++     +
Sbjct: 53  KMPPRAIAESIVKQISK---------NNFSSIEIAGAGFINFTFSKEFLNLSLQSYSRDL 103

Query: 126 VNG--VQPPTLNKKLRVLVDFSSPNIAR 151
            +G  VQ P      +V++DFSSPNIA+
Sbjct: 104 SSGFRVQDPK-----KVVIDFSSPNIAK 126


>gi|148240672|ref|YP_001226059.1| arginyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166232850|sp|A5GP97.1|SYR_SYNPW RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|147849211|emb|CAK24762.1| Arginyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 597

 Score =  286 bits (732), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 152/329 (46%), Positives = 209/329 (63%), Gaps = 21/329 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGDFQ N A+AL K  K            + IA+ + ++L  +P+   +  + ++A PG
Sbjct: 45  EFGDFQANGALALAKPLKQA---------PRQIATAIVAQLQADPAFTDLCLEPQIAGPG 95

Query: 303 FVNVFL-SRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           F+N+ +     A E    +    +  P + +   V+VDFSSPNIAKEMHVGHLRSTIIGD
Sbjct: 96  FINLTVRPERLAAEVSARLGDQRLGVPAVEQAAPVVVDFSSPNIAKEMHVGHLRSTIIGD 155

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESK 419
           +++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   PD L  +  +   DL AFY+E+K
Sbjct: 156 SLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPDALDTADAVDLGDLVAFYREAK 215

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESF 479
           KRFD+DE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L ERGESF
Sbjct: 216 KRFDDDEAFQTTSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLNERGESF 275

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  ++  L+   LL  DDG + ++     G+D   +P+ + KSDGGF Y T+DLAA
Sbjct: 276 YNPFLPAVIDGLKDAELLVTDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYATTDLAA 335

Query: 535 IRQRI----EEEKADWIVYVTDLGQGVHF 559
           IR R     + + A  ++YVTD GQ  HF
Sbjct: 336 IRYRFGAAPDGDDARRVIYVTDAGQANHF 364



 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 150/350 (42%), Positives = 203/350 (58%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   PD L  +  +   DL A
Sbjct: 150 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPDALDTADAVDLGDLVA 209

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFD+DE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L 
Sbjct: 210 FYREAKKRFDDDEAFQTTSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLN 269

Query: 683 ERGESFYQKHMEQLV-------------------------------PYLEKKGN------ 705
           ERGESFY   +  ++                               P + +K +      
Sbjct: 270 ERGESFYNPFLPAVIDGLKDAELLVTDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYA 329

Query: 706 ----LSLTKKLG----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                ++  + G          ++YVTD GQ  HF  + + A++AG + P   R++ V F
Sbjct: 330 TTDLAAIRYRFGAAPDGDDARRVIYVTDAGQANHFAGVFQVAQRAGWI-PEGARLEHVPF 388

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L +LLDE + R+   L+ +    E + +E  +      V 
Sbjct: 389 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERAETDLRSRLNEEERSESEEFIQHVAGTVG 448

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 449 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 498



 Score =  112 bits (281), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 89/162 (54%), Gaps = 11/162 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G    DL V
Sbjct: 447  VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLEV 502

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
               +  +     +E+AL + LL+ + V+  V  +L  + LC YL+++S  F+ FYD    
Sbjct: 503  L--TGQLQFSEPQEWALVRELLKFDAVIAEVEEELLPNRLCSYLFELSQVFNRFYDQVPV 560

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ DAE         RL L   TA  +K    +L I T+ +M
Sbjct: 561  LKADAEA-----LPSRLALCRLTADTLKSGLGLLGIPTLDRM 597



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGDFQ N A+AL K  K            + IA+ + ++L  +P+   +  + + A PG
Sbjct: 45  EFGDFQANGALALAKPLKQA---------PRQIATAIVAQLQADPAFTDLCLEPQIAGPG 95

Query: 107 FVNVFL-SRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ +     A E    +    +  P + +   V+VDFSSPNIA++
Sbjct: 96  FINLTVRPERLAAEVSARLGDQRLGVPAVEQAAPVVVDFSSPNIAKE 142


>gi|84996665|ref|XP_953054.1| arginyl-tRNA synthetase [Theileria annulata strain Ankara]
 gi|65304050|emb|CAI76429.1| arginyl-tRNA synthetase, putative [Theileria annulata]
          Length = 632

 Score =  286 bits (732), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 163/399 (40%), Positives = 243/399 (60%), Gaps = 33/399 (8%)

Query: 242 HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSI----ASVVTSELATNPSLAKVIDKIE 297
            KFGD+Q +DAM+L K  KD     +P ++A+ +    +S   S +  +P   K  +K  
Sbjct: 44  QKFGDYQWSDAMSLFKAAKDHLSVNSPKELAEMVKNNISSNSFSSINVSPQGNKYQNKTN 103

Query: 298 VAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLR-----VLVDFSSPNIAKEMHVG 352
           +   GF+   LS  +  ++I+ +   G   P+++K        V++DFSSPNIAKEMHVG
Sbjct: 104 MW-IGFMTFVLSNDWIEQEIRSLAKYG---PSVDKSTEKHGETVVIDFSSPNIAKEMHVG 159

Query: 353 HLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412
           HLRST+IGD+++R+LE+ G+ V R+NH+GDWGTQFGMLI ++ +K+PD+L   P I+DL 
Sbjct: 160 HLRSTVIGDSLARVLEFFGYKVRRINHLGDWGTQFGMLIEYMFEKYPDFLNNMPSISDLT 219

Query: 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL 472
            FYKE+K R D DE FKK++   VV LQ  D + K  W+++CD+S   F +IY RL++  
Sbjct: 220 KFYKEAKLRMDVDEEFKKKSRSRVVRLQSGDEESKLVWKVLCDISLESFNRIYKRLDINF 279

Query: 473 TERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDL 532
              GESFY   + ++V  L+ +G+ +  +G  +++  D  S+P+ +VKSDGGF YD++DL
Sbjct: 280 EIFGESFYNDMIPEIVKDLQDRGIAQESEGALVIF-TDASSVPLMLVKSDGGFGYDSTDL 338

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF-RLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           A IR R ++ KADWI+YVTD+GQ  HF +L + + I G            + VR++HVG 
Sbjct: 339 ACIRYRTQQLKADWIIYVTDIGQSEHFLKLFKSAQIAG----------WCENVRIDHVG- 387

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
               FGM+     +KF    T+S     L     E+ KR
Sbjct: 388 ----FGMVQNEFGEKFK---TRSGDTVKLVDLLDEAVKR 419



 Score =  263 bits (672), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 147/351 (41%), Positives = 203/351 (57%), Gaps = 47/351 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD+++R+LE+ G+ V R+NH+GDWGTQFGMLI ++ +K+PD+L   P I+DL  FY
Sbjct: 163 STVIGDSLARVLEFFGYKVRRINHLGDWGTQFGMLIEYMFEKYPDFLNNMPSISDLTKFY 222

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KE+K R D DE FKK++   VV LQ  D + K  W+++CD+S   F +IY RL++     
Sbjct: 223 KEAKLRMDVDEEFKKKSRSRVVRLQSGDEESKLVWKVLCDISLESFNRIYKRLDINFEIF 282

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GESFY   + ++V  L+ +G                   L L K  G             
Sbjct: 283 GESFYNDMIPEIVKDLQDRGIAQESEGALVIFTDASSVPLMLVKSDGGFGYDSTDLACIR 342

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YVTD+GQ  HF  L + A+ AG       R+D VGFG+V  E  +KFK
Sbjct: 343 YRTQQLKADWIIYVTDIGQSEHFLKLFKSAQIAGWC--ENVRIDHVGFGMVQNEFGEKFK 400

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSGDTVKL +LLDE ++RS  +L+ ++ +       L E  +A+ YG IKY DL+H+  
Sbjct: 401 TRSGDTVKLVDLLDEAVKRSKIELEKRDPNI----PNLDEIAEALGYGSIKYFDLNHSVT 456

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
            +Y FSFDKMLD RGNTAVY+ Y+Y RI  I + A   +   PE     +E
Sbjct: 457 TNYKFSFDKMLDPRGNTAVYMFYSYARICQIFKKAQSKTSSNPETSGDHAE 507



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 103/206 (50%), Gaps = 44/206 (21%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR---- 1006
            L E  +A+ YG IKY DL+H+   +Y FSFDKMLD RGNTAVY+ Y+Y RI  I +    
Sbjct: 434  LDEIAEALGYGSIKYFDLNHSVTTNYKFSFDKMLDPRGNTAVYMFYSYARICQIFKKAQS 493

Query: 1007 -------TAG-----------------INSED-LRVAAQSTPVS--------LEHEKEFA 1033
                   T+G                 +N ED L V  +ST V         +EH  E A
Sbjct: 494  KTSSNPETSGDHAETNPNPENSDDNPEVNGEDNLLVNEKSTVVDDVKLSKLVIEHPTEVA 553

Query: 1034 LAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGR 1093
            L K LL+   +L  + +DL ++ L +YLY++S  FS FY  C  +          +   R
Sbjct: 554  LGKCLLKFPSILDQIHKDLAINRLTDYLYELSVQFSSFYTKCKVVG-------DPMQESR 606

Query: 1094 LLLAEATAKVMKKCFDILNIRTVHKM 1119
            L+L   T  VM+ CF ++ I+ + ++
Sbjct: 607  LILCSCTKDVMRTCFQLIGIKPLERI 632



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 13/116 (11%)

Query: 46  HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSI----ASVVTSELATNPSLAKVIDKIE 101
            KFGD+Q +DAM+L K  KD     +P ++A+ +    +S   S +  +P   K  +K  
Sbjct: 44  QKFGDYQWSDAMSLFKAAKDHLSVNSPKELAEMVKNNISSNSFSSINVSPQGNKYQNKTN 103

Query: 102 AAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLR-----VLVDFSSPNIARK 152
               GF+   LS  +  ++++ +   G   P+++K        V++DFSSPNIA++
Sbjct: 104 MW-IGFMTFVLSNDWIEQEIRSLAKYG---PSVDKSTEKHGETVVIDFSSPNIAKE 155


>gi|302757685|ref|XP_002962266.1| hypothetical protein SELMODRAFT_76727 [Selaginella moellendorffii]
 gi|300170925|gb|EFJ37526.1| hypothetical protein SELMODRAFT_76727 [Selaginella moellendorffii]
          Length = 578

 Score =  285 bits (730), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 160/399 (40%), Positives = 229/399 (57%), Gaps = 31/399 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD-KGE 264
           SVR  +S +F  A +    E       V + N     KFGD+Q N+AM +    K  +  
Sbjct: 6   SVRSEISQIFQAAFRSTVGEWVSVEPIVTACNNP---KFGDYQINNAMGIWSRIKGMQST 62

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP  IAQ +          N     + +K  VA  G++NV LS  +  E++  ++  G
Sbjct: 63  YGNPVSIAQDVLR--------NIPRTSLFEKTSVAGAGYINVTLSARFIAERLTTVLHQG 114

Query: 325 VQP--PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           V    P L  K   LVDFSSPNIAKE+HVGHLRST+IGD+++R+LE+    V+R NHVGD
Sbjct: 115 VDALAPELPVK-HALVDFSSPNIAKELHVGHLRSTVIGDSVARMLEFCNVSVMRRNHVGD 173

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           WGTQFGML+ H+ +   +       I DLQ  Y E+ +RF  DE FK +A Q VV LQR 
Sbjct: 174 WGTQFGMLLEHIFETGAEV----EGIGDLQKMYVEASERFKSDEQFKAKAQQGVVKLQRS 229

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           + +Y   W+ +CDVSRR +++ Y RLNV+L E+GESFY  ++   +  LE+KGLL+  DG
Sbjct: 230 EAEYHAKWKSLCDVSRRAYERTYGRLNVSLEEKGESFYHPYIPYAIKALEEKGLLQESDG 289

Query: 503 RKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
            ++++ E    IP+ + K+DG  TY T+DLAA+  R+  EKA+WI+YVTD+GQ  HF + 
Sbjct: 290 ARVIFLEGY-DIPLIVTKTDGAITYATTDLAALWYRVHVEKAEWIIYVTDVGQKQHFDMF 348

Query: 563 EESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
            ++  +   +        H   +  H+G     FGM++ 
Sbjct: 349 FQAAKLAGWLPE------HGFPKAQHIG-----FGMVLG 376



 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/337 (41%), Positives = 194/337 (57%), Gaps = 47/337 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD+++R+LE+    V+R NHVGDWGTQFGML+ H+ +   +       I DLQ  Y
Sbjct: 147 STVIGDSVARMLEFCNVSVMRRNHVGDWGTQFGMLLEHIFETGAEV----EGIGDLQKMY 202

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
            E+ +RF  DE FK +A Q VV LQR + +Y   W+ +CDVSRR +++ Y RLNV+L E+
Sbjct: 203 VEASERFKSDEQFKAKAQQGVVKLQRSEAEYHAKWKSLCDVSRRAYERTYGRLNVSLEEK 262

Query: 685 GESFYQKHMEQLVPYLEKKGNLS------------------LTKKLG------------- 713
           GESFY  ++   +  LE+KG L                   +TK  G             
Sbjct: 263 GESFYHPYIPYAIKALEEKGLLQESDGARVIFLEGYDIPLIVTKTDGAITYATTDLAALW 322

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNK-TRMDFVGFGVVLGEDRKKF 762
                     I+YVTD+GQ  HF +  + AK AG L  +   +   +GFG+VLGED K+ 
Sbjct: 323 YRVHVEKAEWIIYVTDVGQKQHFDMFFQAAKLAGWLPEHGFPKAQHIGFGMVLGEDGKRI 382

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           + R G  V L+ LLD+   RS  +L ++ R  E +  +L  A +A+ YG +KYADL +NR
Sbjct: 383 RGRKGG-VLLANLLDDAKSRSHKELIERGRKGEWSGQDLEAAAEALGYGAVKYADLKNNR 441

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
             +Y F FD+MLD +GNTAVYL YAY R+ SI R +G
Sbjct: 442 ETNYRFDFDQMLDIKGNTAVYLFYAYARVCSIIRKSG 478



 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 107/188 (56%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS  +L ++ R  E +  +L  A +A+ YG +KYADL +NR  +Y F FD+MLD +GNTA
Sbjct: 401  RSHKELIERGRKGEWSGQDLEAAAEALGYGAVKYADLKNNRETNYRFDFDQMLDIKGNTA 460

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYL YAY R+ SI R +G + ++++   Q   + +EH  E +L   L++  + +      
Sbjct: 461  VYLFYAYARVCSIIRKSGRSIDEIK---QICELVVEHPHERSLGLHLIQFTETVEDSISR 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L    LC+YLY +S  F++FY +C        G ++     RLLL EA   +MK+  ++L
Sbjct: 518  LLPSTLCDYLYTLSELFTQFYTSC-----KVNGSLQ--EASRLLLCEAARLIMKQGLELL 570

Query: 1112 NIRTVHKM 1119
             +  + ++
Sbjct: 571  GLTPLERL 578



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 15/146 (10%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD-KGE 68
           SVR  +S +F  A +    E       V + N     KFGD+Q N+AM +    K  +  
Sbjct: 6   SVRSEISQIFQAAFRSTVGEWVSVEPIVTACNNP---KFGDYQINNAMGIWSRIKGMQST 62

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP  IAQ +          N     + +K   A  G++NV LS  +  E++  ++  G
Sbjct: 63  YGNPVSIAQDVLR--------NIPRTSLFEKTSVAGAGYINVTLSARFIAERLTTVLHQG 114

Query: 129 VQP--PTLNKKLRVLVDFSSPNIARK 152
           V    P L  K   LVDFSSPNIA++
Sbjct: 115 VDALAPELPVK-HALVDFSSPNIAKE 139


>gi|62184813|ref|YP_219598.1| arginyl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|81313008|sp|Q5L6U4.1|SYR_CHLAB RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|62147880|emb|CAH63627.1| putative arginyl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 562

 Score =  285 bits (730), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 227/368 (61%), Gaps = 31/368 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++  YLS +   A+  AFP++   +  +  + ++    FG +QCNDAM L +  K    
Sbjct: 1   MTLLSYLSSLCREAILSAFPQIETISPDITQSTKEL---FGHYQCNDAMKLARTLK---- 53

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---I 321
              P  IA+SI   ++               IE+A  GF+N   S+ +    ++     +
Sbjct: 54  -MPPRAIAESIVKQISK---------NNFSSIEIAGAGFINFTFSKEFLNLSLQSYSRDL 103

Query: 322 VNG--VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
            +G  VQ P      +V++DFSSPNIAK+MHVGHLRSTIIGD ++R+  ++GHDV+RLNH
Sbjct: 104 SSGFRVQDPK-----KVVIDFSSPNIAKDMHVGHLRSTIIGDCLARIFTFVGHDVLRLNH 158

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           +GDWGT FGMLI +LQ++  + +     + DL   YK++  RF ED  FKKR+   VVAL
Sbjct: 159 IGDWGTAFGMLITYLQEESSEDIES---LEDLTILYKKAHVRFAEDAEFKKRSQTNVVAL 215

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q  DP  +K WE IC++S R FQKIY+ L++ + +RGESFY   + +++  LEKK L+ +
Sbjct: 216 QSGDPKARKLWERICEISERAFQKIYNILDIQIEKRGESFYNPFLPEIIEDLEKKNLITV 275

Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
            D  K ++ E   SIP+ + K DGG+ Y T+DLAA+R R+E++ AD I+ VTD+GQ +HF
Sbjct: 276 SDEAKCVFHEG-FSIPLMVQKRDGGYNYATTDLAAMRYRVEQDHADRIIIVTDMGQSLHF 334

Query: 560 RLLEESTI 567
           +LLE + +
Sbjct: 335 QLLEATAL 342



 Score =  259 bits (663), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 146/337 (43%), Positives = 202/337 (59%), Gaps = 47/337 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+  ++GHDV+RLNH+GDWGT FGMLI +LQ++  + +     + DL   Y
Sbjct: 135 STIIGDCLARIFTFVGHDVLRLNHIGDWGTAFGMLITYLQEESSEDIES---LEDLTILY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  DP  +K WE IC++S R FQKIY+ L++ + +R
Sbjct: 192 KKAHVRFAEDAEFKKRSQTNVVALQSGDPKARKLWERICEISERAFQKIYNILDIQIEKR 251

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLT------------------KKLG------------- 713
           GESFY   + +++  LEKK  ++++                  K+ G             
Sbjct: 252 GESFYNPFLPEIIEDLEKKNLITVSDEAKCVFHEGFSIPLMVQKRDGGYNYATTDLAAMR 311

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+ VTD+GQ +HF+LLE  A  AG L PNK     VGFG+VL  + KKFK
Sbjct: 312 YRVEQDHADRIIIVTDMGQSLHFQLLEATALAAGYL-PNKDVFSHVGFGLVLDSEGKKFK 370

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + +++  LK K+R  E++  E++E    +    IKYADLS +R 
Sbjct: 371 TRSGENIKLQELLDTAIDQAVATLK-KHR-PEMSDAEITERAPVLGMNAIKYADLSSHRV 428

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            DYVFSF+KML   GNTA+++LY Y RI  I R  GI
Sbjct: 429 SDYVFSFEKMLRFEGNTAMFILYGYVRIQGIKRRLGI 465



 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K    E++  E++E    +    IKYADLS +R  DYVFSF+KML   GNTA+++LY Y 
Sbjct: 395  KKHRPEMSDAEITERAPVLGMNAIKYADLSSHRVSDYVFSFEKMLRFEGNTAMFILYGYV 454

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI  I R  GI    L  AA     +++   E ALA  LLR  + + +  ++LC H L +
Sbjct: 455  RIQGIKRRLGIEKLSLESAA-----NIQEPSEEALALALLRFPEAIDITLKELCPHFLTD 509

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++  F  F+ +C+ IE     K       RL L     K +     +L ++T+ ++
Sbjct: 510  YLYMLTNKFHAFFRDCH-IEGSPHQK------ERLYLCALVEKTLATGMHLLGLQTLDRL 562



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 27/148 (18%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++  YLS +   A+  AFP++   +  +  + ++    FG +QCNDAM L +       
Sbjct: 1   MTLLSYLSSLCREAILSAFPQIETISPDITQSTKEL---FGHYQCNDAMKLARTL----- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---I 125
           K  P  IA+SI   ++               IE A  GF+N   S+ +    ++     +
Sbjct: 53  KMPPRAIAESIVKQISK---------NNFSSIEIAGAGFINFTFSKEFLNLSLQSYSRDL 103

Query: 126 VNG--VQPPTLNKKLRVLVDFSSPNIAR 151
            +G  VQ P      +V++DFSSPNIA+
Sbjct: 104 SSGFRVQDPK-----KVVIDFSSPNIAK 126


>gi|75909766|ref|YP_324062.1| arginyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|109894972|sp|Q3M769.1|SYR_ANAVT RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|75703491|gb|ABA23167.1| arginyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
          Length = 588

 Score =  285 bits (729), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 161/351 (45%), Positives = 209/351 (59%), Gaps = 52/351 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  P+ LT +    I DL +
Sbjct: 139 STIIGDSIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVSPEALTTANALDIGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD DE F++ A Q VV LQ    D   AW+++C+ SR++FQ IYD L+V LT
Sbjct: 199 FYRQAKQRFDADEAFQETARQEVVRLQAGATDTLHAWKLLCEQSRQEFQVIYDLLDVKLT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  LE  G L              T + G                 
Sbjct: 259 ERGESFYNPLLPTVVEGLEASGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             IVYVTD GQ  HF    + A+KAG + PN   +  V FG+VL
Sbjct: 319 TTDLAALRYRIQKDEAKRIVYVTDAGQANHFAQFFQVARKAGWI-PNDVELVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKD--KNRHTELTPTELSEAQQAVAYGCI 813
           GED KKFKTRSGDTV+L +LLDE + R+   L++  K    E TP  + +  + V    +
Sbjct: 378 GEDGKKFKTRSGDTVRLRDLLDEAVSRAHADLEERLKAEEREETPEFIDKVAEVVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADLS NR  +Y+FS+DKMLD +GNTA Y+LYAY RI  I+R  GIN  D
Sbjct: 438 KYADLSQNRTSNYIFSYDKMLDLKGNTAPYMLYAYARIQGISRKGGINFAD 488



 Score =  284 bits (727), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 152/325 (46%), Positives = 211/325 (64%), Gaps = 21/325 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N A++L K               ++IAS +  +L     ++++ +  E+A PG
Sbjct: 38  KFGDYQANVALSLSKKLGQP---------PRAIASAIVEKL----DVSEICETPEIAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           F+N+ L   Y   Q+  I  +  +  PT     R +VDFSSPNIAKEMHVGHLRSTIIGD
Sbjct: 85  FINLKLKTAYLEAQLNAIQADSRLGVPTAKHPQREIVDFSSPNIAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESK 419
           +I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  P+ LT +    I DL +FY+++K
Sbjct: 145 SIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVSPEALTTANALDIGDLVSFYRQAK 204

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESF 479
           +RFD DE F++ A Q VV LQ    D   AW+++C+ SR++FQ IYD L+V LTERGESF
Sbjct: 205 QRFDADEAFQETARQEVVRLQAGATDTLHAWKLLCEQSRQEFQVIYDLLDVKLTERGESF 264

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  LE  GLL  + G K ++       +   +P+ + KSDGG+ Y T+DLAA
Sbjct: 265 YNPLLPTVVEGLEASGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNYATTDLAA 324

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHF 559
           +R RI++++A  IVYVTD GQ  HF
Sbjct: 325 LRYRIQKDEAKRIVYVTDAGQANHF 349



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/186 (42%), Positives = 115/186 (61%), Gaps = 9/186 (4%)

Query: 935  DKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYL 994
            ++LK + R  E TP  + +  + V    +KYADLS NR  +Y+FS+DKMLD +GNTA Y+
Sbjct: 411  ERLKAEER--EETPEFIDKVAEVVGISAVKYADLSQNRTSNYIFSYDKMLDLKGNTAPYM 468

Query: 995  LYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCL 1054
            LYAY RI  I+R  GIN  DL     +  V L+H+ EFALAK LL++ +V+  V  DL  
Sbjct: 469  LYAYARIQGISRKGGINFADL---GDNAKVILQHDTEFALAKYLLQLGEVISTVEADLLP 525

Query: 1055 HHLCEYLYDISTAFSEFYDNCYCIEK-DAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
            + LCEYLY++S  F+ FYD    ++   AE   + + T RL+L + TA+ +K    +L I
Sbjct: 526  NRLCEYLYELSKKFNTFYDRNQGVQVLSAE---EPLRTSRLVLCDLTARTLKLGLSLLGI 582

Query: 1114 RTVHKM 1119
            + + +M
Sbjct: 583  QVLERM 588



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 14/107 (13%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q N A++L K               ++IAS +  +L     ++++ +  E A PG
Sbjct: 38  KFGDYQANVALSLSKKLGQP---------PRAIASAIVEKL----DVSEICETPEIAGPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   Y   Q+  I  +  +  PT     R +VDFSSPNIA++
Sbjct: 85  FINLKLKTAYLEAQLNAIQADSRLGVPTAKHPQREIVDFSSPNIAKE 131


>gi|428300338|ref|YP_007138644.1| arginyl-tRNA synthetase [Calothrix sp. PCC 6303]
 gi|428236882|gb|AFZ02672.1| arginyl-tRNA synthetase [Calothrix sp. PCC 6303]
          Length = 585

 Score =  285 bits (729), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/327 (46%), Positives = 217/327 (66%), Gaps = 25/327 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N +++L K             + Q   +V T+ +  N  ++ + + +E+A+PG
Sbjct: 38  KFGDYQSNVSLSLAK------------KLGQQPRAVATA-IVENLDVSDICEALEIAEPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L   Y   Q+  I  +   GV P T N K R +VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85  FINIRLKTEYLEAQLNRIQTDPRLGV-PITKNPK-REIVDFSSPNIAKEMHVGHLRSTII 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKE 417
           GD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  P+ LT +    I DL  FYK+
Sbjct: 143 GDSIARILEFQGHDVLRLNHVGDWGTQFGMLITYLREVCPEALTTANALDIGDLVEFYKK 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +K RFD DE F+K A + VV LQ    D  +AW+++C+ SR++FQ IYD L++ + ERGE
Sbjct: 203 AKARFDGDETFQKTAREEVVKLQAGAEDTIRAWKLLCEQSRQEFQIIYDILDINVKERGE 262

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           SFY  ++  +V  L+K GLLE   G K+++ E     +   +P+ + K+DGG+ Y T+DL
Sbjct: 263 SFYNSYLAAVVADLDKAGLLEESQGAKVVFLEGFTNKEGQPLPLIVQKTDGGYNYATTDL 322

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
           AA+R R+++++A  ++YVTD GQ  HF
Sbjct: 323 AALRYRLQQDQAQRLIYVTDSGQAGHF 349



 Score =  270 bits (690), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 154/348 (44%), Positives = 204/348 (58%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  P+ LT +    I DL  
Sbjct: 139 STIIGDSIARILEFQGHDVLRLNHVGDWGTQFGMLITYLREVCPEALTTANALDIGDLVE 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K RFD DE F+K A + VV LQ    D  +AW+++C+ SR++FQ IYD L++ + 
Sbjct: 199 FYKKAKARFDGDETFQKTAREEVVKLQAGAEDTIRAWKLLCEQSRQEFQIIYDILDINVK 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY  ++  +V  L+K G L              T K G                 
Sbjct: 259 ERGESFYNSYLAAVVADLDKAGLLEESQGAKVVFLEGFTNKEGQPLPLIVQKTDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++YVTD GQ  HF  + + A+KAG + P+   +  V FG+VL
Sbjct: 319 TTDLAALRYRLQQDQAQRLIYVTDSGQAGHFTGVFQVARKAGWI-PDDVEIVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KKFKTRSGD V+L +LLDE + RS   L+ + +  E   TE  +S   + V    +
Sbjct: 378 GEDGKKFKTRSGDVVRLRDLLDEAIARSRADLEARLQAEERQETEEFISNVAEVVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  DY FSFD+ML  +GNTA Y+LYAY R   IAR   I+
Sbjct: 438 KYADLSQNRTTDYKFSFDRMLSLKGNTAPYMLYAYVRTQGIAREGNID 485



 Score =  132 bits (333), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 112/193 (58%), Gaps = 10/193 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
             + RS   L+ + +  E   TE  +S   + V    +KYADLS NR  DY FSFD+ML  
Sbjct: 401  AIARSRADLEARLQAEERQETEEFISNVAEVVGISAVKYADLSQNRTTDYKFSFDRMLSL 460

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
            +GNTA Y+LYAY R   IAR   I+  +L     +  + L+ E EF LAK +L+++ V+ 
Sbjct: 461  KGNTAPYMLYAYVRTQGIAREGNIDFLNL---GANVKIFLKEEAEFTLAKHILQLDQVIA 517

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             V ++L  + LCEYLY++S  F++FY+NC  ++ +     + V T RL L + TA+ +K 
Sbjct: 518  EVEQELLPNRLCEYLYNLSDKFNKFYENCPVLKSE-----EPVRTSRLALCDLTARTLKL 572

Query: 1107 CFDILNIRTVHKM 1119
               +L IR + +M
Sbjct: 573  GLSLLGIRVLERM 585



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 18/109 (16%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q N +++L K             + Q   +V T+ +  N  ++ + + +E A+PG
Sbjct: 38  KFGDYQSNVSLSLAK------------KLGQQPRAVATA-IVENLDVSDICEALEIAEPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   Y   Q+  I  +   GV P T N K R +VDFSSPNIA++
Sbjct: 85  FINIRLKTEYLEAQLNRIQTDPRLGV-PITKNPK-REIVDFSSPNIAKE 131


>gi|33866849|ref|NP_898408.1| arginyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|39932064|sp|Q7U3V8.1|SYR_SYNPX RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|33639450|emb|CAE08834.1| arginyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 597

 Score =  285 bits (728), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 162/370 (43%), Positives = 221/370 (59%), Gaps = 29/370 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFP---ELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           +S+ + L      A+Q AFP    + D   + AS  E     FGDFQ N A+ L K  K 
Sbjct: 9   LSLSNTLDAQLRAAMQRAFPVADAVLDPQLAPASKPE-----FGDFQANGALPLAKPLKQ 63

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL-SRVYAGEQIKDI 320
                      + IA+ +  +L  +     +  + ++A PGF+N+ +     A E    +
Sbjct: 64  A---------PRQIATAIVEQLQADSGFTDLCLEPQIAGPGFINLTIRPERLAAEVSARL 114

Query: 321 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
               +  P + +   V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLNHV
Sbjct: 115 GDERLGVPAVEQAAPVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHTVLRLNHV 174

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLI HL+   PD L  +  +   DL AFY+E+KKRFD+DE F+  + + VV 
Sbjct: 175 GDWGTQFGMLITHLKQVAPDALETADAVDLGDLVAFYREAKKRFDDDEAFQSTSREEVVK 234

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ  DP   KAW ++CD SRR+FQKIYDRL++ L ERGESFY   +  ++  L+   LL 
Sbjct: 235 LQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLNERGESFYNPFLPAVIDGLKAAELLV 294

Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI----EEEKADWIVY 549
            DDG + ++     G+D   +P+ + KSDGGF Y T+DLAAIR R     + + A  +VY
Sbjct: 295 TDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYATTDLAAIRYRFGAAPDGDGARRVVY 354

Query: 550 VTDLGQGVHF 559
           VTD GQ  HF
Sbjct: 355 VTDAGQANHF 364



 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 151/350 (43%), Positives = 205/350 (58%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   PD L  +  +   DL A
Sbjct: 150 STIIGDSLARVLEFRGHTVLRLNHVGDWGTQFGMLITHLKQVAPDALETADAVDLGDLVA 209

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFD+DE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L 
Sbjct: 210 FYREAKKRFDDDEAFQSTSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLN 269

Query: 683 ERGESFYQKHMEQLV-------------------------------PYLEKKGN------ 705
           ERGESFY   +  ++                               P + +K +      
Sbjct: 270 ERGESFYNPFLPAVIDGLKAAELLVTDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYA 329

Query: 706 ----LSLTKKLG----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                ++  + G          +VYVTD GQ  HF  + + A++AG + P+  R++ V F
Sbjct: 330 TTDLAAIRYRFGAAPDGDGARRVVYVTDAGQANHFAGVFQVAERAGWI-PDGARLEHVPF 388

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L +LLDE + R+   L+ + +  E + +E  +      V 
Sbjct: 389 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERAETDLRSRLKEEERSESEEFIQNVAGTVG 448

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 449 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 498



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 11/162 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G    DL V
Sbjct: 447  VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLEV 502

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
            +  +  +     +E+AL + LL+ + V+  V  +L  + LC YL+++S  F+ FYD    
Sbjct: 503  S--TGQLQFSEPQEWALVRELLKFDSVIAEVEEELLPNRLCSYLFELSQVFNRFYDQVPV 560

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ D E         RL L   TA  ++    +L I T+ +M
Sbjct: 561  LKADPEA-----LASRLALCRLTADTLRLGLGLLGIATLDRM 597



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 18/148 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFP---ELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           +S+ + L      A+Q AFP    + D   + AS  E     FGDFQ N A+ L K  K 
Sbjct: 9   LSLSNTLDAQLRAAMQRAFPVADAVLDPQLAPASKPE-----FGDFQANGALPLAKPLKQ 63

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-SRVYAGEQMKDI 124
                      + IA+ +  +L  +     +  + + A PGF+N+ +     A E    +
Sbjct: 64  A---------PRQIATAIVEQLQADSGFTDLCLEPQIAGPGFINLTIRPERLAAEVSARL 114

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
               +  P + +   V+VDFSSPNIA++
Sbjct: 115 GDERLGVPAVEQAAPVVVDFSSPNIAKE 142


>gi|88809846|ref|ZP_01125352.1| arginyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88786230|gb|EAR17391.1| arginyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 590

 Score =  284 bits (727), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 159/356 (44%), Positives = 219/356 (61%), Gaps = 27/356 (7%)

Query: 218 AVQVAFPEL--GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSI 275
           A+Q A PE   G     VA++  +    FGDFQ N A+ L K  K            + I
Sbjct: 15  AMQRALPEADAGLDPQLVAASKPE----FGDFQANGALPLAKPLKQA---------PRQI 61

Query: 276 ASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL-SRVYAGEQIKDIIVNGVQPPTLNKKL 334
           A+ +  +L  +P+   +  + ++A PGF+N+ +     A E    +    +  P +  + 
Sbjct: 62  ATAIVEQLQADPAFTDLCLEPQIAGPGFINLTIRPERLAAEVSARLGDERLGVPAVVNEA 121

Query: 335 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL 394
            V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL
Sbjct: 122 PVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHL 181

Query: 395 QDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEM 452
           +   P+ L  +  +   DL AFY+E+KKRFDEDE F+  + + VV LQ  DP   KAW +
Sbjct: 182 KQVAPEALETADAVDLGDLVAFYREAKKRFDEDEAFQFTSREEVVKLQGGDPVSLKAWGL 241

Query: 453 ICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW----- 507
           +CD SRR+FQKIYDRL++ L+ERGESFY   +  ++  L+   LL  DDG + ++     
Sbjct: 242 LCDQSRREFQKIYDRLDIRLSERGESFYNPFLPAVIDGLKDAELLVTDDGAECVFLEGVQ 301

Query: 508 GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI----EEEKADWIVYVTDLGQGVHF 559
           G+D   +P+ + KSDGGF Y T+DLAAIR R     + + A  ++YVTD GQ  HF
Sbjct: 302 GKDGNPLPVIVRKSDGGFNYATTDLAAIRYRFGAVPDGDGARRVIYVTDAGQANHF 357



 Score =  270 bits (689), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 158/350 (45%), Positives = 207/350 (59%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL A
Sbjct: 143 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALETADAVDLGDLVA 202

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFDEDE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL++ L+
Sbjct: 203 FYREAKKRFDEDEAFQFTSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLS 262

Query: 683 ERGESFYQ----------KHMEQLVP-------YLE----KKGN---------------- 705
           ERGESFY           K  E LV        +LE    K GN                
Sbjct: 263 ERGESFYNPFLPAVIDGLKDAELLVTDDGAECVFLEGVQGKDGNPLPVIVRKSDGGFNYA 322

Query: 706 ----LSLTKKLG----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                ++  + G          ++YVTD GQ  HF  + + A +AG + P+  R++ V F
Sbjct: 323 TTDLAAIRYRFGAVPDGDGARRVIYVTDAGQANHFAGVFQVATRAGWI-PDGARLEHVPF 381

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTRSGDTV+L +LLDE + R+   L+ + +  E + +E  +      V 
Sbjct: 382 GLVQGEDGKKLKTRSGDTVRLRDLLDEAVERAEADLRSRLKAEERSESEEFIHHVAATVG 441

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 442 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 491



 Score =  110 bits (274), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 90/162 (55%), Gaps = 11/162 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G    DL V
Sbjct: 440  VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLEV 495

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
            +  +  +     +E+AL + LL+ + V+  V  +L  + LC YL+++S  F+ FYD    
Sbjct: 496  S--TAQLQFSEPQEWALVRELLKFDVVIAEVEEELLPNRLCSYLFELSQVFNRFYDQVPV 553

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ ++E         RL L   TA  +K    +L I ++ +M
Sbjct: 554  LKAESEA-----LPSRLALCRLTADTLKAGLGLLGIPSLERM 590



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 16/134 (11%)

Query: 22  AVQVAFPEL--GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSI 79
           A+Q A PE   G     VA++  +    FGDFQ N A+ L K  K            + I
Sbjct: 15  AMQRALPEADAGLDPQLVAASKPE----FGDFQANGALPLAKPLKQA---------PRQI 61

Query: 80  ASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-SRVYAGEQMKDIIVNGVQPPTLNKKL 138
           A+ +  +L  +P+   +  + + A PGF+N+ +     A E    +    +  P +  + 
Sbjct: 62  ATAIVEQLQADPAFTDLCLEPQIAGPGFINLTIRPERLAAEVSARLGDERLGVPAVVNEA 121

Query: 139 RVLVDFSSPNIARK 152
            V+VDFSSPNIA++
Sbjct: 122 PVVVDFSSPNIAKE 135


>gi|223997646|ref|XP_002288496.1| arginyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220975604|gb|EED93932.1| arginyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 602

 Score =  284 bits (726), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 170/396 (42%), Positives = 234/396 (59%), Gaps = 45/396 (11%)

Query: 226 LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELAT 285
           +GD   + A+  E     FGD+QCN AM+L K         NP    +  AS +   L  
Sbjct: 22  IGDSMVTPATKPE-----FGDYQCNAAMSLAK-----SAGLNP----RECASKIVDGLKA 67

Query: 286 NPSLAKVIDKIEVAKPGFVNVFLSRVY----AGEQIKDIIVNG-VQPPTLNKKLRVLVDF 340
                 ++++ E+A PGF+N+     Y    AG+   D    G +  P    K +++VDF
Sbjct: 68  IEGFDTIMEEPEIAGPGFINLRFKDGYLAGAAGKMAMDAEDGGRLAIPVTKNKQKIIVDF 127

Query: 341 SSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPD 400
           SSPNIAKEMHVGHLRSTIIGDT+S LL + GHDV+RLNHVGDWGTQFGML+ HL+D+FP+
Sbjct: 128 SSPNIAKEMHVGHLRSTIIGDTLSNLLTFSGHDVLRLNHVGDWGTQFGMLVEHLRDEFPE 187

Query: 401 YL----TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDV 456
            L    +K+  + DL   YK +KKRFD DE FK RA + VV LQ  D +   AWE +C  
Sbjct: 188 ALDKESSKNVDLGDLVMLYKAAKKRFDVDEEFKVRAREGVVKLQAGDEEALAAWESLCAA 247

Query: 457 SRRDFQKIYDRLNVT-LTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GED 510
           SR ++QKIYD L++  L ERGESFY  ++  ++  LE +GL    +G   ++       D
Sbjct: 248 SRVEYQKIYDLLSIKGLNERGESFYNPYLVGVIEDLESQGLAVESEGATAVFLDGYTNRD 307

Query: 511 RGSIPMTIVKSDGGFTYDTSDLAAIRQRIE------EEKADWIVYVTDLGQGVHFRLL-- 562
              +PM + KSDGGF Y T+DLAAIR R++       EKAD ++YVTD GQ  HF ++  
Sbjct: 308 GSPLPMLVRKSDGGFNYATTDLAAIRHRVQLDPSDGGEKADRVLYVTDAGQSQHFEMVFA 367

Query: 563 --EESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 596
             +++  I + IS  LE++   +V+    G+ G +F
Sbjct: 368 AAKKAGFIAEPIS--LEHVPFGLVQ----GEDGKKF 397



 Score =  246 bits (629), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 154/378 (40%), Positives = 205/378 (54%), Gaps = 66/378 (17%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL----TK 613
           H R    STIIGDT+S LL + GHDV+RLNHVGDWGTQFGML+ HL+D+FP+ L    +K
Sbjct: 140 HLR----STIIGDTLSNLLTFSGHDVLRLNHVGDWGTQFGMLVEHLRDEFPEALDKESSK 195

Query: 614 SPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKI 673
           +  + DL   YK +KKRFD DE FK RA + VV LQ  D +   AWE +C  SR ++QKI
Sbjct: 196 NVDLGDLVMLYKAAKKRFDVDEEFKVRAREGVVKLQAGDEEALAAWESLCAASRVEYQKI 255

Query: 674 YDRLNVT-LTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV--------------- 717
           YD L++  L ERGESFY  ++  ++  LE +G    ++    V++               
Sbjct: 256 YDLLSIKGLNERGESFYNPYLVGVIEDLESQGLAVESEGATAVFLDGYTNRDGSPLPMLV 315

Query: 718 -----------TDLGQGVH---------------------------FRLLEECAKKAGIL 739
                      TDL    H                           F ++   AKKAG +
Sbjct: 316 RKSDGGFNYATTDLAAIRHRVQLDPSDGGEKADRVLYVTDAGQSQHFEMVFAAAKKAGFI 375

Query: 740 NPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELT 797
                 ++ V FG+V GED KKF TRSGDTVKL +LLDE ++ + + +K +  N   EL+
Sbjct: 376 -AEPISLEHVPFGLVQGEDGKKFATRSGDTVKLKDLLDEAVKIAGEDMKSRMDNPDQELS 434

Query: 798 PTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIART 857
              L++  + V  G +KYADLS NR  +Y FS+ +ML   GNTA Y+LYAY RI  I R 
Sbjct: 435 EA-LNDVAKTVGIGAVKYADLSMNRESNYKFSYGRMLSLNGNTAPYMLYAYARICGIVRK 493

Query: 858 AGINSEDPPEPDPSQSEV 875
           A   SED     P  S++
Sbjct: 494 ATGQSEDTKVEWPEASDI 511



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 101/175 (57%), Gaps = 9/175 (5%)

Query: 950  ELSEA----QQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIA 1005
            ELSEA     + V  G +KYADLS NR  +Y FS+ +ML   GNTA Y+LYAY RI  I 
Sbjct: 432  ELSEALNDVAKTVGIGAVKYADLSMNRESNYKFSYGRMLSLNGNTAPYMLYAYARICGIV 491

Query: 1006 RTAGINSEDLRVA-AQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDI 1064
            R A   SED +V   +++ + + H+ E  L + L+++ D+L  V  DL  + LC+YL++ 
Sbjct: 492  RKATGQSEDTKVEWPEASDIIISHDAEKQLVRNLVKLPDILSEVETDLYPNRLCDYLFET 551

Query: 1065 STAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            S  F++FY+NC     +AE     +   RL L   +A  ++   ++L I+ V K+
Sbjct: 552  SQKFNQFYENCSV--NNAE--TPELKASRLSLCTVSAATIRLLMNLLGIQVVEKL 602



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 19/128 (14%)

Query: 30  LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELAT 89
           +GD   + A+  E     FGD+QCN AM+L K         NP    +  AS +   L  
Sbjct: 22  IGDSMVTPATKPE-----FGDYQCNAAMSLAK-----SAGLNP----RECASKIVDGLKA 67

Query: 90  NPSLAKVIDKIEAAKPGFVNVFLSRVY----AGEQMKDIIVNG-VQPPTLNKKLRVLVDF 144
                 ++++ E A PGF+N+     Y    AG+   D    G +  P    K +++VDF
Sbjct: 68  IEGFDTIMEEPEIAGPGFINLRFKDGYLAGAAGKMAMDAEDGGRLAIPVTKNKQKIIVDF 127

Query: 145 SSPNIARK 152
           SSPNIA++
Sbjct: 128 SSPNIAKE 135


>gi|359459146|ref|ZP_09247709.1| arginyl-tRNA synthetase [Acaryochloris sp. CCMEE 5410]
          Length = 584

 Score =  283 bits (725), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 195/531 (36%), Positives = 288/531 (54%), Gaps = 62/531 (11%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           S+   L   F  A+  AF    +   SV         KFGD+Q N ++AL K        
Sbjct: 3   SILKTLETRFDRALNAAFG--SELVISVPVVGVASNPKFGDYQSNVSLALAKPLG----- 55

Query: 266 KNPFDIA-QSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
           ++P  IA Q +  +   +L   P+         +A PGF+N+ L   +  EQ++ +  + 
Sbjct: 56  QSPRGIADQILQHLEVDDLCEPPT---------IAGPGFINLTLKPTFLAEQLQQMQADP 106

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G++  ++    RV+VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ G+DV+RLNHVG
Sbjct: 107 RLGIE--SIADPQRVIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFQGNDVLRLNHVG 164

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           DWGTQFGMLI +L +  P  LT S    + DL AFYK++K+RFDEDE F+ ++   VV L
Sbjct: 165 DWGTQFGMLITYLSEVHPAALTTSDALDLGDLVAFYKKAKQRFDEDEDFQVQSRNAVVKL 224

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
           Q+ DP+  +AW+++CD SRR+F+KIY  L++ LTERGESFY   +  ++  L+K GLLE 
Sbjct: 225 QQGDPEATQAWQLLCDQSRREFEKIYRDLDIELTERGESFYNPLLADVLTDLDKAGLLET 284

Query: 500 DDGRKIMWGED----RGSI-PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLG 554
           D G + ++ E     +G   P+ + KSDGGF Y T+DLAA+R RI  E A  I+YVT   
Sbjct: 285 DQGAQCVFLEGFTNKQGDPQPLIVQKSDGGFNYATTDLAALRHRINTESATRIIYVTGAE 344

Query: 555 QGVH----FRLLEESTIIGDTI--------------SRLLEYLGHDVVRLNHVGDWGTQF 596
           Q  H    F++   +  I DT+               + L+    + VRL  + D     
Sbjct: 345 QINHFAQVFQVATRAHWIPDTVQVVHVPFGMVQGEDGKKLKTRSGETVRLRGLLDEAISR 404

Query: 597 GM------LIAHLQDKFPDYLTKSPPIADLQAF-YKESKKRFDEDEIFKKRAYQCVVALQ 649
                   L    + + P+++T    +  L A  Y +  +    + +F   +Y  ++ALQ
Sbjct: 405 AQSDVESRLAEDERTETPEFITNVAQVIGLGAVKYADLSQNRTSNYVF---SYDKMLALQ 461

Query: 650 RFDPDYK-KAWEMICDVSRR---DFQKIYDRLNVTLTERGESFYQKHMEQL 696
                Y   A+  +  +SR+   DF K+ D  ++T+ E  E    KH+ Q+
Sbjct: 462 GNTAPYMIYAYVRVQGISRKGNIDFSKLSDA-SMTIAEPSELALAKHLLQM 511



 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/349 (42%), Positives = 205/349 (58%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+ G+DV+RLNHVGDWGTQFGMLI +L +  P  LT S  +   DL A
Sbjct: 139 STIIGDCIARILEFQGNDVLRLNHVGDWGTQFGMLITYLSEVHPAALTTSDALDLGDLVA 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK++K+RFDEDE F+ ++   VV LQ+ DP+  +AW+++CD SRR+F+KIY  L++ LT
Sbjct: 199 FYKKAKQRFDEDEDFQVQSRNAVVKLQQGDPEATQAWQLLCDQSRREFEKIYRDLDIELT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  ++  L+K G L              T K G                 
Sbjct: 259 ERGESFYNPLLADVLTDLDKAGLLETDQGAQCVFLEGFTNKQGDPQPLIVQKSDGGFNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVT   Q  HF  + + A +A  + P+  ++  V FG+V 
Sbjct: 319 TTDLAALRHRINTESATRIIYVTGAEQINHFAQVFQVATRAHWI-PDTVQVVHVPFGMVQ 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK---NRHTELTPTELSEAQQAVAYGC 812
           GED KK KTRSG+TV+L  LLDE + R+   ++ +   +  TE TP  ++   Q +  G 
Sbjct: 378 GEDGKKLKTRSGETVRLRGLLDEAISRAQSDVESRLAEDERTE-TPEFITNVAQVIGLGA 436

Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           +KYADLS NR  +YVFS+DKML  +GNTA Y++YAY R+  I+R   I+
Sbjct: 437 VKYADLSQNRTSNYVFSYDKMLALQGNTAPYMIYAYVRVQGISRKGNID 485



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 103/173 (59%), Gaps = 9/173 (5%)

Query: 947  TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006
            TP  ++   Q +  G +KYADLS NR  +YVFS+DKML  +GNTA Y++YAY R+  I+R
Sbjct: 421  TPEFITNVAQVIGLGAVKYADLSQNRTSNYVFSYDKMLALQGNTAPYMIYAYVRVQGISR 480

Query: 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST 1066
               I+   L  A+    +++    E ALAK LL+M D+L  V  DL  + LC+YL+++S 
Sbjct: 481  KGNIDFSKLSDAS----MTIAEPSELALAKHLLQMQDILAEVAADLMPNRLCQYLFELSQ 536

Query: 1067 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             F++FYD C  +  +   +     T RL+L++ TA+ +K    +L I  + +M
Sbjct: 537  KFNQFYDQCPVLNAEEPAR-----TSRLVLSDLTARTLKLGLSLLGIEVLERM 584



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 22/147 (14%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+   L   F  A+  AF    +   SV         KFGD+Q N ++AL K        
Sbjct: 3   SILKTLETRFDRALNAAFG--SELVISVPVVGVASNPKFGDYQSNVSLALAKPLG----- 55

Query: 70  KNPFDIA-QSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
           ++P  IA Q +  +   +L   P++A          PGF+N+ L   +  EQ++ +  + 
Sbjct: 56  QSPRGIADQILQHLEVDDLCEPPTIAG---------PGFINLTLKPTFLAEQLQQMQADP 106

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             G++  ++    RV+VDFSSPNIA++
Sbjct: 107 RLGIE--SIADPQRVIVDFSSPNIAKE 131


>gi|89898642|ref|YP_515752.1| arginyl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|109894981|sp|Q253D1.1|SYR_CHLFF RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|89332014|dbj|BAE81607.1| arginyl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 562

 Score =  283 bits (725), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 158/403 (39%), Positives = 240/403 (59%), Gaps = 34/403 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++  YLS +   A   AFP++ + +  +  + +++   FG +QCNDAM L     D+  
Sbjct: 1   MTLLSYLSSLCREATLSAFPQVENPSPDITQSTKEH---FGHYQCNDAMKL-----DRTL 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K  P  IA++I + +  +             +EVA  GF+N   S+ +  ++++    + 
Sbjct: 53  KMAPRAIAEAIVNNLPKD---------NFSSVEVAGAGFINFTFSKEFLKQRLETFSADL 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                +    ++++DFSSPNIAK+MHVGHLRSTIIGD ++R+  ++G+DV+RLNH+GDWG
Sbjct: 104 SSGFCVKDPKKIVIDFSSPNIAKDMHVGHLRSTIIGDCLARVFSFVGNDVLRLNHIGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           T FGMLI +LQ++  + +     + DL A YK++  RF ED  FKKR+   VVALQ  DP
Sbjct: 164 TAFGMLITYLQEEASEDVGN---LEDLTALYKKAHARFAEDVEFKKRSQANVVALQSGDP 220

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
                W+ IC++S R FQKIYD L V + +RGESFY   + +++  LE K L+ + D  K
Sbjct: 221 SALNLWKHICEISERAFQKIYDILGVAIEKRGESFYNPFLPEIIQDLENKKLITVSDNAK 280

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
            ++ E   SIP+ + KSDGG+ Y T+DLAA+R R+E++ AD I+ VTD+GQ +HF+LLE 
Sbjct: 281 CVFHEGF-SIPLMVQKSDGGYNYATTDLAAMRYRVEKDHADKIIIVTDMGQSLHFQLLEA 339

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           + +          YL  D    +HVG     FG+++     KF
Sbjct: 340 TALAAG-------YL-RDKETFSHVG-----FGLVLDSEGKKF 369



 Score =  245 bits (625), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/337 (41%), Positives = 193/337 (57%), Gaps = 47/337 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+  ++G+DV+RLNH+GDWGT FGMLI +LQ++  + +     + DL A Y
Sbjct: 135 STIIGDCLARVFSFVGNDVLRLNHIGDWGTAFGMLITYLQEEASEDVGN---LEDLTALY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  DP     W+ IC++S R FQKIYD L V + +R
Sbjct: 192 KKAHARFAEDVEFKKRSQANVVALQSGDPSALNLWKHICEISERAFQKIYDILGVAIEKR 251

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + +++  LE K  ++++     V+                            
Sbjct: 252 GESFYNPFLPEIIQDLENKKLITVSDNAKCVFHEGFSIPLMVQKSDGGYNYATTDLAAMR 311

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD+GQ +HF+LLE  A  AG L   +T    VGFG+VL  + KKFK
Sbjct: 312 YRVEKDHADKIIIVTDMGQSLHFQLLEATALAAGYLRDKET-FSHVGFGLVLDSEGKKFK 370

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELL+  + +++  LK+     E++  E+S+    +    IKYADLS +R 
Sbjct: 371 TRSGENIKLKELLNTAVDQAVATLKE--HRPEMSEEEISQRAPILGINAIKYADLSSHRV 428

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            DYVFSF+KML   GNTA++LLYAY RI  I R   I
Sbjct: 429 SDYVFSFEKMLRFEGNTAMFLLYAYVRIQGIKRRLNI 465



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K    E++  E+S+    +    IKYADLS +R  DYVFSF+KML   GNTA++LLYAY 
Sbjct: 395  KEHRPEMSEEEISQRAPILGINAIKYADLSSHRVSDYVFSFEKMLRFEGNTAMFLLYAYV 454

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI  I R   +N E L + A    V+++   E ALA  LLR  + + +  ++LC H L +
Sbjct: 455  RIQGIKRR--LNIEKLNLEA---VVNIQEPAEEALALALLRFPEAIDVTLKELCPHFLTD 509

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++  F+ F+ +C+      EG        RL L     K +     +L ++T+ ++
Sbjct: 510  YLYMLTNKFNAFFRDCHI-----EG--SPYQQERLYLCALVEKTLATGMHLLGLQTLDRL 562



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++  YLS +   A   AFP++ + +  +  + +++   FG +QCNDAM L     D+  
Sbjct: 1   MTLLSYLSSLCREATLSAFPQVENPSPDITQSTKEH---FGHYQCNDAMKL-----DRTL 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K  P  IA++I + +  +             +E A  GF+N   S+ +  ++++    + 
Sbjct: 53  KMAPRAIAEAIVNNLPKD---------NFSSVEVAGAGFINFTFSKEFLKQRLETFSADL 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIAR 151
                +    ++++DFSSPNIA+
Sbjct: 104 SSGFCVKDPKKIVIDFSSPNIAK 126


>gi|254415644|ref|ZP_05029403.1| arginyl-tRNA synthetase [Coleofasciculus chthonoplastes PCC 7420]
 gi|196177594|gb|EDX72599.1| arginyl-tRNA synthetase [Coleofasciculus chthonoplastes PCC 7420]
          Length = 585

 Score =  283 bits (724), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 156/327 (47%), Positives = 211/327 (64%), Gaps = 25/327 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N A++L K        + P  IAQ         L  +  +A +     VA PG
Sbjct: 38  KFGDYQSNAALSLAKPLG-----QPPRAIAQM--------LINHLDVADICYTPTVAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N  L   Y   ++   + +   GV+P    +  RV+VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85  FINFTLKPAYLEAKLNRNLTHPHLGVEPA--KQPQRVVVDFSSPNIAKEMHVGHLRSTII 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKE 417
           GD I+R+LE+  HDV+RLNHVGDWGTQFGMLI +L++  P+ LT +  +   DL +FY++
Sbjct: 143 GDCIARILEFRDHDVLRLNHVGDWGTQFGMLITYLREVCPEALTTAEAVDLGDLVSFYRQ 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +KKRFD DE+F++ A Q VV LQ    D K+AW+++C+ SRR+FQ IYD L+V +TERGE
Sbjct: 203 AKKRFDTDEVFQEAARQEVVKLQAGAEDTKRAWQLLCEQSRREFQVIYDLLDVHITERGE 262

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGS-IPMTIVKSDGGFTYDTSDL 532
           SFY   +  +V  LE+ GLL  D G K ++ E     +G  +P+ + KSDGG+ Y T+DL
Sbjct: 263 SFYNPLLPDVVKDLEQSGLLVEDQGAKCVFLEGFTNKKGEPLPLIVQKSDGGYNYATTDL 322

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
           AA+R RI++  A  I+YVTD GQ  HF
Sbjct: 323 AALRYRIDQNGAKRIIYVTDAGQANHF 349



 Score =  277 bits (709), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/350 (45%), Positives = 207/350 (59%), Gaps = 52/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+  HDV+RLNHVGDWGTQFGMLI +L++  P+ LT +  +   DL +
Sbjct: 139 STIIGDCIARILEFRDHDVLRLNHVGDWGTQFGMLITYLREVCPEALTTAEAVDLGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++KKRFD DE+F++ A Q VV LQ    D K+AW+++C+ SRR+FQ IYD L+V +T
Sbjct: 199 FYRQAKKRFDTDEVFQEAARQEVVKLQAGAEDTKRAWQLLCEQSRREFQVIYDLLDVHIT 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  LE+ G L              T K G                 
Sbjct: 259 ERGESFYNPLLPDVVKDLEQSGLLVEDQGAKCVFLEGFTNKKGEPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF  + + A++AG L P    +  V FG+VL
Sbjct: 319 TTDLAALRYRIDQNGAKRIIYVTDAGQANHFAQVFQVAQRAGWL-PEIVEIVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLD+ + R+   L+ + +      TE  +    Q V    +
Sbjct: 378 GEDGKKLKTRSGETVRLRDLLDQAIARARADLETRIQAEGRQETEEFIEHVAQVVGMAAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NR  +YVFSFDKML  +GNTA YLLYAY RI SI R  GI+ E
Sbjct: 438 KYADLSQNRTSNYVFSFDKMLSLKGNTAPYLLYAYARIQSIGRKGGIDFE 487



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 106/164 (64%), Gaps = 8/164 (4%)

Query: 956  QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL 1015
            Q V    +KYADLS NR  +YVFSFDKML  +GNTA YLLYAY RI SI R  GI+ E L
Sbjct: 430  QVVGMAAVKYADLSQNRTSNYVFSFDKMLSLKGNTAPYLLYAYARIQSIGRKGGIDFEQL 489

Query: 1016 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1075
            R    ST VSL+ ++E  LAK LL++N+V+  V ++L  + LC+YLY++S  FS+FYD C
Sbjct: 490  RT---STQVSLKEDQEATLAKHLLQVNEVIKEVEQELLPNRLCQYLYELSEKFSQFYDQC 546

Query: 1076 YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              ++ +     ++V   RL+L + TA+ +K    +L I  + +M
Sbjct: 547  PVLKAE-----ESVRLSRLILCDLTAQTLKLGLSLLGISVLERM 585



 Score = 48.1 bits (113), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 20/110 (18%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQS-IASVVTSELATNPSLAKVIDKIEAAKP 105
           KFGD+Q N A++L K        + P  IAQ  I  +  +++   P++A          P
Sbjct: 38  KFGDYQSNAALSLAKPLG-----QPPRAIAQMLINHLDVADICYTPTVAG---------P 83

Query: 106 GFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           GF+N  L   Y   ++   + +   GV+P    +  RV+VDFSSPNIA++
Sbjct: 84  GFINFTLKPAYLEAKLNRNLTHPHLGVEPA--KQPQRVVVDFSSPNIAKE 131


>gi|330444190|ref|YP_004377176.1| arginyl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328807300|gb|AEB41473.1| arginyl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 564

 Score =  283 bits (724), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/362 (42%), Positives = 222/362 (61%), Gaps = 19/362 (5%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           S+   LS +   A+ +AFPE+      V  + ++    FG +QCNDAM L ++ K     
Sbjct: 3   SLLSELSVLCHQALSLAFPEVKGWEPEVTPSTKEL---FGHYQCNDAMKLARVLK----- 54

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
           + P  IA++I S +  +        +  D IE+A  GF+N   S  +  E++        
Sbjct: 55  QAPRSIAEAIVSHLPHK--------EFFDSIEIAGAGFINFTFSSKFLTERLNSFSSTLA 106

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
               +     +++DFSSPNIAK+MHVGHLRSTIIG+ ++R+L Y+G+ V+RLNH+GDWGT
Sbjct: 107 SGLRVEHPQNIVIDFSSPNIAKDMHVGHLRSTIIGECLARILSYVGNSVLRLNHIGDWGT 166

Query: 386 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445
            FGMLIA +++  P+       + DL   YK + KRF E+E FKKRA Q VVALQ  +P 
Sbjct: 167 AFGMLIAFIEES-PEE-ANLDNLKDLTELYKRAHKRFAEEEAFKKRAQQRVVALQAQEPQ 224

Query: 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
               W+ IC++S + FQ+IYD L++TL +RGESFY   + +++  LE K L+ L D  K 
Sbjct: 225 ALALWKKICEISEKAFQQIYDILDITLEKRGESFYNPFLPEVIQDLESKHLITLSDKAKC 284

Query: 506 MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEES 565
           ++ E   SIP  + KSDGG+ Y T+DLAA+R R+E + A+ I+ VTDLGQ +HF+LLE +
Sbjct: 285 VFHEGF-SIPFMVQKSDGGYNYATTDLAAMRYRVEHDHAEKIIIVTDLGQSLHFQLLEAT 343

Query: 566 TI 567
            I
Sbjct: 344 AI 345



 Score =  239 bits (609), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 152/381 (39%), Positives = 206/381 (54%), Gaps = 47/381 (12%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+ ++R+L Y+G+ V+RLNH+GDWGT FGMLIA +++  P+       + DL   Y
Sbjct: 137 STIIGECLARILSYVGNSVLRLNHIGDWGTAFGMLIAFIEES-PEE-ANLDNLKDLTELY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K + KRF E+E FKKRA Q VVALQ  +P     W+ IC++S + FQ+IYD L++TL +R
Sbjct: 195 KRAHKRFAEEEAFKKRAQQRVVALQAQEPQALALWKKICEISEKAFQQIYDILDITLEKR 254

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + +++  LE K  ++L+ K   V+                            
Sbjct: 255 GESFYNPFLPEVIQDLESKHLITLSDKAKCVFHEGFSIPFMVQKSDGGYNYATTDLAAMR 314

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTDLGQ +HF+LLE  A  AG L+P       VGFG+VL  + KKFK
Sbjct: 315 YRVEHDHAEKIIIVTDLGQSLHFQLLEATAIAAGYLHPGM--FSHVGFGLVLDAEGKKFK 372

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + ++ + L   +   E+T TEL E    +    IKYADLS +R 
Sbjct: 373 TRSGENIKLQELLDTAIEKAREALL--SHRPEVTETELEELAPIIGINAIKYADLSSHRV 430

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSEVEDRCCPSH 883
            DY+FSF+KML   GNTA++LLYAY RI  I R   +       P   Q   E+    S 
Sbjct: 431 SDYIFSFEKMLRFDGNTAMFLLYAYVRIQGIKRRLHLQELSLSGPLSLQDPAEEALALSL 490

Query: 884 AKTHRKPPFTYTELIEQALKE 904
            +       T  EL    L E
Sbjct: 491 LRFPEALQLTIKELCPHFLTE 511



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 90/159 (56%), Gaps = 12/159 (7%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            +    IKYADLS +R  DY+FSF+KML   GNTA++LLYAY RI  I R   +    L  
Sbjct: 415  IGINAIKYADLSSHRVSDYIFSFEKMLRFDGNTAMFLLYAYVRIQGIKRRLHLQELSL-- 472

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
               S P+SL+   E ALA +LLR  + L L  ++LC H L EYLY ++  F+ F+ +C+ 
Sbjct: 473  ---SGPLSLQDPAEEALALSLLRFPEALQLTIKELCPHFLTEYLYTLTQKFNRFFRDCHI 529

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTV 1116
                 EG    + + RL L   T KV+     +L +RT+
Sbjct: 530  -----EG--SPLESERLTLCALTEKVLATGMHLLGLRTL 561



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 16/142 (11%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+   LS +   A+ +AFPE+      V  + ++    FG +QCNDAM L ++      K
Sbjct: 3   SLLSELSVLCHQALSLAFPEVKGWEPEVTPSTKEL---FGHYQCNDAMKLARVL-----K 54

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
           + P  IA++I S +  +        +  D IE A  GF+N   S  +  E++        
Sbjct: 55  QAPRSIAEAIVSHLPHK--------EFFDSIEIAGAGFINFTFSSKFLTERLNSFSSTLA 106

Query: 130 QPPTLNKKLRVLVDFSSPNIAR 151
               +     +++DFSSPNIA+
Sbjct: 107 SGLRVEHPQNIVIDFSSPNIAK 128


>gi|427710258|ref|YP_007052635.1| arginyl-tRNA synthetase [Nostoc sp. PCC 7107]
 gi|427362763|gb|AFY45485.1| arginyl-tRNA synthetase [Nostoc sp. PCC 7107]
          Length = 588

 Score =  283 bits (723), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 156/354 (44%), Positives = 224/354 (63%), Gaps = 25/354 (7%)

Query: 215 FTHAVQVAFPELGDKTASVASTNEKYVH-KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 273
           F  A+  AF   GD+ A+V        + KFGD+Q N A++L K    +          +
Sbjct: 12  FEQAMMAAF---GDEYATVDPILVPAGNPKFGDYQANVALSLSKKLGQQ---------PR 59

Query: 274 SIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG-VQPPTLNK 332
           +IAS +  +L     ++++ +  E+A PGF+N+ L   Y   Q++ I  +  +  P    
Sbjct: 60  AIASAIVEKL----DVSQICEPPEIAGPGFINLRLKTAYLQAQLQAIYPDSRLGVPQAKT 115

Query: 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 392
             + +VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI 
Sbjct: 116 PQQEIVDFSSPNIAKEMHVGHLRSTIIGDSIARILEFRGHDVLRLNHVGDWGTQFGMLIT 175

Query: 393 HLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAW 450
           +L++ +P  LT +    I DL +FY+++K+RFD DE F++ A Q VV LQ    D   AW
Sbjct: 176 YLREVYPQALTTANALDIGDLVSFYRQAKQRFDADETFQETARQEVVKLQAGAADTLHAW 235

Query: 451 EMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE- 509
           +++C+ SR++FQ IYD L++ L ERGESFY   +  +V  L K GLL  + G K+++ E 
Sbjct: 236 KLLCEQSRKEFQVIYDLLDIHLNERGESFYNPLLPAIVEDLAKSGLLVENQGAKVVFLEG 295

Query: 510 ----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
               +   +P+ + KSDGG+ Y T+DLAA+R RI+++ A  I+YVTD GQ  HF
Sbjct: 296 YTNREGEPLPLIVKKSDGGYNYATTDLAALRYRIQKDAAKRIIYVTDAGQSNHF 349



 Score =  269 bits (688), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 149/350 (42%), Positives = 206/350 (58%), Gaps = 52/350 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++ +P  LT +    I DL +
Sbjct: 139 STIIGDSIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVYPQALTTANALDIGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD DE F++ A Q VV LQ    D   AW+++C+ SR++FQ IYD L++ L 
Sbjct: 199 FYRQAKQRFDADETFQETARQEVVKLQAGAADTLHAWKLLCEQSRKEFQVIYDLLDIHLN 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L K G L              T + G                 
Sbjct: 259 ERGESFYNPLLPAIVEDLAKSGLLVENQGAKVVFLEGYTNREGEPLPLIVKKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF    + A+KAG + P+   +  V FG+VL
Sbjct: 319 TTDLAALRYRIQKDAAKRIIYVTDAGQSNHFAQFFQVARKAGWI-PDDVELVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED K+ KTR+G++V+L +LLDE + R+   L+ + +    T T   ++   Q +    +
Sbjct: 378 GEDGKRIKTRAGESVRLRDLLDEAIIRARTDLEQRLQEDNRTETADFIANVAQVIGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NR  +Y+FS++KMLD +GNTA Y+LYAY RI  I+R  GIN E
Sbjct: 438 KYADLSQNRTSNYIFSYNKMLDLKGNTAPYMLYAYARIQGISRKGGINFE 487



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 117/185 (63%), Gaps = 9/185 (4%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +L++ NR TE T   ++   Q +    +KYADLS NR  +Y+FS++KMLD +GNTA Y+L
Sbjct: 412  RLQEDNR-TE-TADFIANVAQVIGISAVKYADLSQNRTSNYIFSYNKMLDLKGNTAPYML 469

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YAY RI  I+R  GIN E L   AQ   V LEHE EFALAK LL++ +V+  V +DL  +
Sbjct: 470  YAYARIQGISRKGGINFEQLGDNAQ---VILEHETEFALAKYLLQLGEVVSTVEQDLLPN 526

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEK-DAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIR 1114
             LCEYLY++S  F+ FYD  + +   DAE   +   T RL+L + TA+ +K    +L I+
Sbjct: 527  RLCEYLYELSKKFNVFYDRNHGVRVLDAE---EPQRTSRLVLCDLTARTLKLGLSLLGIQ 583

Query: 1115 TVHKM 1119
             + +M
Sbjct: 584  VLERM 588



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 18/136 (13%)

Query: 19  FTHAVQVAFPELGDKTASVASTNEKYVH-KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 77
           F  A+  AF   GD+ A+V        + KFGD+Q N A++L K    +          +
Sbjct: 12  FEQAMMAAF---GDEYATVDPILVPAGNPKFGDYQANVALSLSKKLGQQ---------PR 59

Query: 78  SIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG-VQPPTLNK 136
           +IAS +  +L     ++++ +  E A PGF+N+ L   Y   Q++ I  +  +  P    
Sbjct: 60  AIASAIVEKL----DVSQICEPPEIAGPGFINLRLKTAYLQAQLQAIYPDSRLGVPQAKT 115

Query: 137 KLRVLVDFSSPNIARK 152
             + +VDFSSPNIA++
Sbjct: 116 PQQEIVDFSSPNIAKE 131


>gi|159902746|ref|YP_001550090.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|238687135|sp|A9BDF0.1|SYR_PROM4 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|159887922|gb|ABX08136.1| Arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 603

 Score =  283 bits (723), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 163/365 (44%), Positives = 227/365 (62%), Gaps = 32/365 (8%)

Query: 218 AVQVAFPELG-DKTASVASTNEKYVH----KFGDFQCNDAMALCKIFKDKGEKKNPFDIA 272
           A++ AFP+       S  S N + V     +FGDFQ N A+AL KI K     K P  IA
Sbjct: 15  ALEAAFPQASLVAKQSGQSLNPQLVPATKPEFGDFQVNGALALSKILK-----KAPRKIA 69

Query: 273 QSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI------KDIIVNGVQ 326
           + I      +L  N    K+  K E+A PGF+N+ +       +I        + V   +
Sbjct: 70  EEI----IKQLVKNDDFNKLCLKPEIAGPGFINLTIQNSCLTTEICARLNDDHLGVPIAK 125

Query: 327 PPTLNKKLR-VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
           P   +K L+ ++VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GH V+RLNHVGDWGT
Sbjct: 126 PLKTHKSLKPIVVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFRGHPVLRLNHVGDWGT 185

Query: 386 QFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           QFGMLI +L+   P+ LT +  I   DL  FY+++KK FDEDE F+  + + VV LQ  D
Sbjct: 186 QFGMLITYLKLVAPEALTTANAINLGDLVKFYRQAKKLFDEDETFQDASREEVVRLQNGD 245

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
           P   KAW+++CD SR +F+KIY RL++ +TERGESFY ++++ ++  L+   LL  D+G 
Sbjct: 246 PQSLKAWQLLCDQSRIEFEKIYKRLDIHITERGESFYNQYLQDVIDDLKSTNLLVTDNGA 305

Query: 504 KIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEE----EKADWIVYVTDLG 554
           K ++     G+D   +P+ + K+DGGF Y T+DLAAIR R++     + A  ++YVTD G
Sbjct: 306 KCIFLDDITGKDGKPLPLIVQKTDGGFNYATTDLAAIRYRLQAYPQGDGACRLIYVTDAG 365

Query: 555 QGVHF 559
           Q  HF
Sbjct: 366 QASHF 370



 Score =  253 bits (646), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 148/351 (42%), Positives = 206/351 (58%), Gaps = 58/351 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+I+R+LE+ GH V+RLNHVGDWGTQFGMLI +L+   P+ LT +  I   DL  
Sbjct: 156 STIIGDSIARVLEFRGHPVLRLNHVGDWGTQFGMLITYLKLVAPEALTTANAINLGDLVK 215

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++KK FDEDE F+  + + VV LQ  DP   KAW+++CD SR +F+KIY RL++ +T
Sbjct: 216 FYRQAKKLFDEDETFQDASREEVVRLQNGDPQSLKAWQLLCDQSRIEFEKIYKRLDIHIT 275

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSLT-----------------KKLGIV---------- 715
           ERGESFY ++++ ++  L K  NL +T                 K L ++          
Sbjct: 276 ERGESFYNQYLQDVIDDL-KSTNLLVTDNGAKCIFLDDITGKDGKPLPLIVQKTDGGFNY 334

Query: 716 -------------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVG 750
                                    YVTD GQ  HF  + + A++A  + PN  R++ V 
Sbjct: 335 ATTDLAAIRYRLQAYPQGDGACRLIYVTDAGQASHFFAVFQVARRANWI-PNDCRIEHVP 393

Query: 751 FGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK-NRHTELTPTE-LSEAQQAV 808
           FG+V GED KK KTRSGDTV+L +LLDE + R+ + L+++ N        E +++  + +
Sbjct: 394 FGLVQGEDGKKLKTRSGDTVRLKDLLDEAIIRAKNDLEERLNAEGRKEDQEFINKVSRVI 453

Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
               +KYADLS NR  +Y FSF++ML  +GNTA YLLYA  RIA I R  G
Sbjct: 454 GIAAVKYADLSQNRITNYQFSFNRMLALQGNTAPYLLYALVRIAGINRKGG 504



 Score =  106 bits (264), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 94/169 (55%), Gaps = 11/169 (6%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            +++  + +    +KYADLS NR  +Y FSF++ML  +GNTA YLLYA  RIA I R  G 
Sbjct: 446  INKVSRVIGIAAVKYADLSQNRITNYQFSFNRMLALQGNTAPYLLYALVRIAGINRKGG- 504

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
                  + A    ++    +E+ LA+ LL+ ++V++ V  +L  + LC YL+++S  F+ 
Sbjct: 505  -----SLNATINKLTFNEPQEWMLARELLKFDEVILQVEEELLPNRLCNYLFELSQVFNR 559

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FYD    ++ +      ++   RL L + TA  +K    +L I T+ +M
Sbjct: 560  FYDQVPVLKAN-----DSLKASRLALCQLTADTIKLGLKLLGIPTLDRM 603



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 21/143 (14%)

Query: 22  AVQVAFPELG-DKTASVASTNEKYVH----KFGDFQCNDAMALCKIFKDKGEKKNPFDIA 76
           A++ AFP+       S  S N + V     +FGDFQ N A+AL KI      KK P  IA
Sbjct: 15  ALEAAFPQASLVAKQSGQSLNPQLVPATKPEFGDFQVNGALALSKIL-----KKAPRKIA 69

Query: 77  QSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL------SRVYAGEQMKDIIVNGVQ 130
           + I      +L  N    K+  K E A PGF+N+ +      + + A      + V   +
Sbjct: 70  EEI----IKQLVKNDDFNKLCLKPEIAGPGFINLTIQNSCLTTEICARLNDDHLGVPIAK 125

Query: 131 PPTLNKKLR-VLVDFSSPNIARK 152
           P   +K L+ ++VDFSSPNIA++
Sbjct: 126 PLKTHKSLKPIVVDFSSPNIAKE 148


>gi|302763517|ref|XP_002965180.1| hypothetical protein SELMODRAFT_83543 [Selaginella moellendorffii]
 gi|300167413|gb|EFJ34018.1| hypothetical protein SELMODRAFT_83543 [Selaginella moellendorffii]
          Length = 578

 Score =  282 bits (722), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 157/401 (39%), Positives = 232/401 (57%), Gaps = 35/401 (8%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD-KGE 264
           SVR+ +S +F  A +    E       V + N     KFGD+Q N+AM +    K  +  
Sbjct: 6   SVRNEISQIFQAAFRSTVGEWVSVEPIVIACNNP---KFGDYQINNAMGIWSRIKGMQST 62

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP  +AQ +          N     +++K  VA  G++NV LS  +  E++  ++  G
Sbjct: 63  YGNPVSVAQDVLR--------NIPRTSMLEKTSVAGAGYINVTLSARFIAEKLTTVLHQG 114

Query: 325 VQP--PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
           V    P L  K   LVDFSSPNIAKE+HVGHLRST+IGD+++++LE+    V+R NHVGD
Sbjct: 115 VDALAPELPVK-HALVDFSSPNIAKELHVGHLRSTVIGDSVAKMLEFCNVSVMRRNHVGD 173

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           WGTQFGML+ H+ +   +       I DLQ  Y E+ +RF  DE FK +A Q VV LQR 
Sbjct: 174 WGTQFGMLLEHIFETGAEV----EAIGDLQKMYVEASERFKSDEQFKAKAQQGVVKLQRS 229

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
           + +Y   W+ +CDVSRR +++ Y RLNV+L E+ ESFY  ++   +  LE+KGLL+  DG
Sbjct: 230 EAEYHAKWKSLCDVSRRAYERTYGRLNVSLEEKAESFYHPYIPYAIKSLEEKGLLQESDG 289

Query: 503 RKIMW--GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
            ++++  G D   IP+ + K+DG +TY ++DLAA+  R+  EKA+WI+YVTD+GQ  HF 
Sbjct: 290 ARVIFLKGYD---IPLIVTKTDGAYTYASTDLAALWYRVHVEKAEWIIYVTDVGQKQHFD 346

Query: 561 LLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +  ++  +   +        H   +  H+G     FGM++ 
Sbjct: 347 MFFQAAKLAGWLPE------HGFPKAQHIG-----FGMVLG 376



 Score =  245 bits (626), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 137/337 (40%), Positives = 192/337 (56%), Gaps = 47/337 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD+++++LE+    V+R NHVGDWGTQFGML+ H+ +   +       I DLQ  Y
Sbjct: 147 STVIGDSVAKMLEFCNVSVMRRNHVGDWGTQFGMLLEHIFETGAEV----EAIGDLQKMY 202

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
            E+ +RF  DE FK +A Q VV LQR + +Y   W+ +CDVSRR +++ Y RLNV+L E+
Sbjct: 203 VEASERFKSDEQFKAKAQQGVVKLQRSEAEYHAKWKSLCDVSRRAYERTYGRLNVSLEEK 262

Query: 685 GESFYQKHMEQLVPYLEKKGNLS------------------LTKKLG------------- 713
            ESFY  ++   +  LE+KG L                   +TK  G             
Sbjct: 263 AESFYHPYIPYAIKSLEEKGLLQESDGARVIFLKGYDIPLIVTKTDGAYTYASTDLAALW 322

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNK-TRMDFVGFGVVLGEDRKKF 762
                     I+YVTD+GQ  HF +  + AK AG L  +   +   +GFG+VLGED K+ 
Sbjct: 323 YRVHVEKAEWIIYVTDVGQKQHFDMFFQAAKLAGWLPEHGFPKAQHIGFGMVLGEDGKRI 382

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
           + R G  V L+ LLD+   RS  +L ++ R  E +  +L  A +A+ YG +KYADL +NR
Sbjct: 383 RGRKGG-VLLANLLDDAKSRSHKELIERGRKGEWSGEDLEAAAEALGYGAVKYADLKNNR 441

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              Y F F++MLD +GNTAVYL YAY R+ SI R +G
Sbjct: 442 ETTYRFDFEQMLDIKGNTAVYLFYAYARVCSIIRKSG 478



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 108/188 (57%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            RS  +L ++ R  E +  +L  A +A+ YG +KYADL +NR   Y F F++MLD +GNTA
Sbjct: 401  RSHKELIERGRKGEWSGEDLEAAAEALGYGAVKYADLKNNRETTYRFDFEQMLDIKGNTA 460

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYL YAY R+ SI R +G + ++++   Q+  + +EH  E +L   L++  + +      
Sbjct: 461  VYLFYAYARVCSIIRKSGRSIDEIK---QTCELVVEHPHERSLGLHLVQFTETVEDSISR 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L    LC+YLY +S  F++FY +C        G ++     RLLL EAT  +MK+  ++L
Sbjct: 518  LLPSTLCDYLYTLSELFTQFYTSC-----KVNGSLQ--EASRLLLCEATRLIMKQGLELL 570

Query: 1112 NIRTVHKM 1119
             +  + ++
Sbjct: 571  GLTPLERL 578



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 15/146 (10%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD-KGE 68
           SVR+ +S +F  A +    E       V + N     KFGD+Q N+AM +    K  +  
Sbjct: 6   SVRNEISQIFQAAFRSTVGEWVSVEPIVIACNNP---KFGDYQINNAMGIWSRIKGMQST 62

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP  +AQ +          N     +++K   A  G++NV LS  +  E++  ++  G
Sbjct: 63  YGNPVSVAQDVLR--------NIPRTSMLEKTSVAGAGYINVTLSARFIAEKLTTVLHQG 114

Query: 129 VQP--PTLNKKLRVLVDFSSPNIARK 152
           V    P L  K   LVDFSSPNIA++
Sbjct: 115 VDALAPELPVK-HALVDFSSPNIAKE 139


>gi|29839939|ref|NP_829045.1| arginyl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|33301690|sp|Q824H4.1|SYR_CHLCV RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|29834286|gb|AAP04923.1| arginyl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 564

 Score =  281 bits (720), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 148/363 (40%), Positives = 221/363 (60%), Gaps = 21/363 (5%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++  YLS +   A   AFP++   +  +  + +++   FG +QCNDAM L +  K    
Sbjct: 3   MTLLSYLSSLCREATLSAFPQIDTFSPDITQSTKEH---FGHYQCNDAMKLARTLK---- 55

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P  IA++I + +  E+ T+         IE+A  GF+N   S+ +    +K      
Sbjct: 56  -MAPRAIAEAIVNHIPKEIFTS---------IEIAGAGFINFTFSKEFLNNSLKTFSEEL 105

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                +    +V++DFSSPNIAK+MHVGHLRSTIIGD ++R+  ++G+DV RLNH+GDWG
Sbjct: 106 SSGFRVKDPKKVVIDFSSPNIAKDMHVGHLRSTIIGDCLARVFAFVGNDVSRLNHIGDWG 165

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           T FGMLI +LQ++  + +     + DL   YK++  RF ED  FKKR+   VVALQ  DP
Sbjct: 166 TAFGMLITYLQEEPSEDIEN---LEDLTVLYKKAHARFAEDAEFKKRSQTNVVALQAGDP 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
              K W+ IC +S R FQKIY+ L++ + +RGESFY   + +++  LE K L+ + D  K
Sbjct: 223 SALKLWKQICAISERAFQKIYNILDIAIEKRGESFYNPFLPEIIQDLENKNLITISDNAK 282

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
            ++ E   SIP+ + KSDGG+ Y T+DLAA+R R+  + AD I+ VTD+GQ +HF+LLE 
Sbjct: 283 CVFHEGF-SIPLMVQKSDGGYNYATTDLAAMRYRVNNDGADKIIIVTDMGQSLHFQLLEA 341

Query: 565 STI 567
           + +
Sbjct: 342 TAL 344



 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/353 (40%), Positives = 199/353 (56%), Gaps = 51/353 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+  ++G+DV RLNH+GDWGT FGMLI +LQ++  + +     + DL   Y
Sbjct: 137 STIIGDCLARVFAFVGNDVSRLNHIGDWGTAFGMLITYLQEEPSEDIEN---LEDLTVLY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++  RF ED  FKKR+   VVALQ  DP   K W+ IC +S R FQKIY+ L++ + +R
Sbjct: 194 KKAHARFAEDAEFKKRSQTNVVALQAGDPSALKLWKQICAISERAFQKIYNILDIAIEKR 253

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
           GESFY   + +++  LE K  ++++     V+                            
Sbjct: 254 GESFYNPFLPEIIQDLENKNLITISDNAKCVFHEGFSIPLMVQKSDGGYNYATTDLAAMR 313

Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                        VTD+GQ +HF+LLE  A  AG L PNK     VGFG+VL  + KKFK
Sbjct: 314 YRVNNDGADKIIIVTDMGQSLHFQLLEATALAAGYL-PNKETFSHVGFGLVLDSEGKKFK 372

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           TRSG+ +KL ELLD  + ++   LK+     E++  E+S     +    IKYADLS +R 
Sbjct: 373 TRSGENIKLKELLDTAIDQAKATLKE--HRPEISDEEISSRAPILGINAIKYADLSSHRV 430

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED----PPEPDPSQ 872
            DY+FSF+KML   GNTA++LLYAY RI  I R  GI + D    P   +PS+
Sbjct: 431 SDYIFSFEKMLRFEGNTAMFLLYAYVRIQGIKRRLGIETLDLEATPNIQEPSE 483



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 18/196 (9%)

Query: 930  LRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            L+  LD   D+ + T      E++  E+S     +    IKYADLS +R  DY+FSF+KM
Sbjct: 381  LKELLDTAIDQAKATLKEHRPEISDEEISSRAPILGINAIKYADLSSHRVSDYIFSFEKM 440

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            L   GNTA++LLYAY RI  I R  GI + DL    ++TP +++   E ALA  LLR  +
Sbjct: 441  LRFEGNTAMFLLYAYVRIQGIKRRLGIETLDL----EATP-NIQEPSEEALALALLRFPE 495

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
             + L  +DLC H L +YLY ++  F+ F+ +C+ IE  +  K       RL L     K 
Sbjct: 496  AIDLTLKDLCPHFLTDYLYMLTNKFNAFFRDCH-IEGSSHQK------ERLYLCALVEKT 548

Query: 1104 MKKCFDILNIRTVHKM 1119
            +     +L ++T+ K+
Sbjct: 549  LAAGMHLLGLQTLDKL 564



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 17/143 (11%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++  YLS +   A   AFP++   +  +  + +++   FG +QCNDAM L +       
Sbjct: 3   MTLLSYLSSLCREATLSAFPQIDTFSPDITQSTKEH---FGHYQCNDAMKLARTL----- 54

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K  P  IA++I + +  E+ T+         IE A  GF+N   S+ +    +K      
Sbjct: 55  KMAPRAIAEAIVNHIPKEIFTS---------IEIAGAGFINFTFSKEFLNNSLKTFSEEL 105

Query: 129 VQPPTLNKKLRVLVDFSSPNIAR 151
                +    +V++DFSSPNIA+
Sbjct: 106 SSGFRVKDPKKVVIDFSSPNIAK 128


>gi|428769918|ref|YP_007161708.1| arginyl-tRNA synthetase [Cyanobacterium aponinum PCC 10605]
 gi|428684197|gb|AFZ53664.1| arginyl-tRNA synthetase [Cyanobacterium aponinum PCC 10605]
          Length = 582

 Score =  281 bits (720), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 177/442 (40%), Positives = 261/442 (59%), Gaps = 59/442 (13%)

Query: 211 LSDVFTHAVQVAFPELGDKTAS-----VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           L ++FT A+  AF   G++ A+     V ++N K    FGD+QCN A+ L K  + K   
Sbjct: 5   LRNIFTTALVNAF---GEEFANIDPLVVPASNPK----FGDYQCNIALPLAKSLQQK--- 54

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN-- 323
             P  IA++I +   ++    P        +E+A PGF+N+ +   Y  E+IK   +N  
Sbjct: 55  --PRAIAENIVNHAQTQDFCLP--------LEIAGPGFINITIKPEYIAEKIK---LNQQ 101

Query: 324 ----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
               GV+   +++K +V+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GHDV+RLNH
Sbjct: 102 DERLGVE--KVSEKQKVIVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFRGHDVLRLNH 159

Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           VGDWGTQFGMLIA+L+ + P+ LT +    I DL   YK++K +FD D  F++ A Q VV
Sbjct: 160 VGDWGTQFGMLIAYLRLEKPEVLTTANVVDIGDLVTLYKQAKIKFDNDAEFQETARQEVV 219

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
            LQ  D +  KAW+++C+ SR++F+ IY  L++ L ERGESFY   +  ++  LE   +L
Sbjct: 220 KLQNKDAESIKAWQLLCEQSRKEFEIIYRLLDIKLIERGESFYNPFLPDVIKDLETANIL 279

Query: 498 ELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
             D G K ++      ++   +P+ + KSDGG+ Y T+DLAAI+ RI+E++A+ I+YVTD
Sbjct: 280 TEDQGAKCVFLDGFVNKEGNPLPLIVQKSDGGYNYATTDLAAIKYRIKEDEAERIIYVTD 339

Query: 553 LGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT 612
            GQ  HF  + +     + +         D V L HV      FG+++A    K     T
Sbjct: 340 AGQANHFAQVFQVAKKANFVP--------DNVELVHV-----PFGLVLAEDGKKIK---T 383

Query: 613 KSPPIADLQAFYKESKKRFDED 634
           +S     L+   KE+  R  +D
Sbjct: 384 RSGETIKLKDLLKEAVNRAKQD 405



 Score =  253 bits (645), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 153/357 (42%), Positives = 204/357 (57%), Gaps = 60/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-- 615
           H R    STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L+ + P+ LT +   
Sbjct: 133 HLR----STIIGDSIARVLEFRGHDVLRLNHVGDWGTQFGMLIAYLRLEKPEVLTTANVV 188

Query: 616 PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
            I DL   YK++K +FD D  F++ A Q VV LQ  D +  KAW+++C+ SR++F+ IY 
Sbjct: 189 DIGDLVTLYKQAKIKFDNDAEFQETARQEVVKLQNKDAESIKAWQLLCEQSRKEFEIIYR 248

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLE---------------------KKGN---LSLTKK 711
            L++ L ERGESFY   +  ++  LE                     K+GN   L + K 
Sbjct: 249 LLDIKLIERGESFYNPFLPDVIKDLETANILTEDQGAKCVFLDGFVNKEGNPLPLIVQKS 308

Query: 712 LG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
            G                       I+YVTD GQ  HF  + + AKKA  + P+   +  
Sbjct: 309 DGGYNYATTDLAAIKYRIKEDEAERIIYVTDAGQANHFAQVFQVAKKANFV-PDNVELVH 367

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE----LSEA 804
           V FG+VL ED KK KTRSG+T+KL +LL E + R+   L  +NR T     E    ++E 
Sbjct: 368 VPFGLVLAEDGKKIKTRSGETIKLKDLLKEAVNRAKQDL--ENRLTTEGRNEEEDFINEV 425

Query: 805 QQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            Q V    +KYADLS NR  DY FS+DKML  +GNTA YLLYAY R+  I+R   I+
Sbjct: 426 SQIVGLSAVKYADLSQNRTTDYRFSYDKMLALQGNTAPYLLYAYVRVQGISRKGNID 482



 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 100/169 (59%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++E  Q V    +KYADLS NR  DY FS+DKML  +GNTA YLLYAY R+  I+R   I
Sbjct: 422  INEVSQIVGLSAVKYADLSQNRTTDYRFSYDKMLALQGNTAPYLLYAYVRVQGISRKGNI 481

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
               DL     +  + L  E E  LAK LL+++ ++  V +DL  + LC YL+++S  F++
Sbjct: 482  ---DLDKLESNQDILLTEETELVLAKHLLQLDYIIKEVEKDLLPNRLCLYLFELSQKFNQ 538

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FYD C  ++ + E K+      RL+LA+ TAK +K    +L I  + +M
Sbjct: 539  FYDQCPILQAEEEVKL-----SRLILADLTAKTIKLGLSLLGISVLERM 582



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 36/149 (24%)

Query: 15  LSDVFTHAVQVAFPELGDKTAS-----VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           L ++FT A+  AF   G++ A+     V ++N K    FGD+QCN A+ L K  + K   
Sbjct: 5   LRNIFTTALVNAF---GEEFANIDPLVVPASNPK----FGDYQCNIALPLAKSLQQK--- 54

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN-- 127
             P  IA++I +   ++    P        +E A PGF+N+ +   Y  E++K   +N  
Sbjct: 55  --PRAIAENIVNHAQTQDFCLP--------LEIAGPGFINITIKPEYIAEKIK---LNQQ 101

Query: 128 ----GVQPPTLNKKLRVLVDFSSPNIARK 152
               GV+   +++K +V+VDFSSPNIA++
Sbjct: 102 DERLGVE--KVSEKQKVIVDFSSPNIAKE 128


>gi|126695545|ref|YP_001090431.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|126542588|gb|ABO16830.1| Arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 604

 Score =  281 bits (719), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 158/336 (47%), Positives = 210/336 (62%), Gaps = 27/336 (8%)

Query: 242 HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
            +FGD+QCN  ++L KIFK     KNP DI+    ++    L  N S+AK+   +E+A P
Sbjct: 43  EEFGDYQCNVCLSLSKIFK-----KNPRDISNDFINL----LKKNKSIAKLCKSLEIAGP 93

Query: 302 GFVNVFLS-RVYAGEQIKDIIVNGVQPPTLNKKL------RVLVDFSSPNIAKEMHVGHL 354
           GF+N+ L   V   E I +I  N    P + K L      +V+VDFSSPNIAKEMHVGHL
Sbjct: 94  GFINIKLKDEVLINEIISNIQCNRAGIPLIRKDLDRGLSNKVIVDFSSPNIAKEMHVGHL 153

Query: 355 RSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQ 412
           RSTIIGD+ISR+ E  G++V+RLNHVGDWGTQFGMLI  L+D + + L +     I+DL 
Sbjct: 154 RSTIIGDSISRIFELRGYEVLRLNHVGDWGTQFGMLITQLKDLYSNDLEEIGKIKISDLV 213

Query: 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL 472
            FYKESKKRFD +  F+KR+ + VV LQ  D    KAW+++CD SR++F +IY  L + +
Sbjct: 214 EFYKESKKRFDNESEFQKRSREEVVKLQSGDIKSIKAWKLLCDQSRQEFDEIYKNLKIKI 273

Query: 473 TERGESFYQKHMEQLVPYLEKKGLLELDDGRKI-----MWGEDRGSIPMTIVKSDGGFTY 527
            ERGESFY   ++ ++  L  K +L  D G K      M  ++   +P+ I K DGGF Y
Sbjct: 274 EERGESFYNPFLKSVIDDLNLKKILVEDQGAKCVFLDGMTNKEGKPLPLIIQKKDGGFNY 333

Query: 528 DTSDLAAIRQRIEE----EKADWIVYVTDLGQGVHF 559
            T+DLAAIR R  +    + A  I+YVTD GQ  HF
Sbjct: 334 ATTDLAAIRYRFNKPPNGDDASRIIYVTDHGQANHF 369



 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 143/349 (40%), Positives = 196/349 (56%), Gaps = 60/349 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQA 622
           STIIGD+ISR+ E  G++V+RLNHVGDWGTQFGMLI  L+D + + L +     I+DL  
Sbjct: 155 STIIGDSISRIFELRGYEVLRLNHVGDWGTQFGMLITQLKDLYSNDLEEIGKIKISDLVE 214

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYKESKKRFD +  F+KR+ + VV LQ  D    KAW+++CD SR++F +IY  L + + 
Sbjct: 215 FYKESKKRFDNESEFQKRSREEVVKLQSGDIKSIKAWKLLCDQSRQEFDEIYKNLKIKIE 274

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   ++ ++  L  K  L             +T K G                 
Sbjct: 275 ERGESFYNPFLKSVIDDLNLKKILVEDQGAKCVFLDGMTNKEGKPLPLIIQKKDGGFNYA 334

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 I+YVTD GQ  HF  + + AKKA  + P   ++D V F
Sbjct: 335 TTDLAAIRYRFNKPPNGDDASRIIYVTDHGQANHFAGVFQVAKKAKWI-PENCQVDHVPF 393

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQA 807
           G+V G D KK KTR G+T++L +LL+E +RR+    L +L+D++R+       ++   + 
Sbjct: 394 GLVQGIDGKKLKTREGETIRLKDLLNEAVRRAKEDLLKRLEDEDRYE--NEEFIANTSRI 451

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           + +G +KYADLS NR  +Y FSFDKML   GNTA YLLY   RI  I R
Sbjct: 452 IGFGAVKYADLSQNRITNYQFSFDKMLSLNGNTAPYLLYTLVRILGIKR 500



 Score =  113 bits (283), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 107/188 (56%), Gaps = 15/188 (7%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            L +L+D++R+       ++   + + +G +KYADLS NR  +Y FSFDKML   GNTA Y
Sbjct: 430  LKRLEDEDRYE--NEEFIANTSRIIGFGAVKYADLSQNRITNYQFSFDKMLSLNGNTAPY 487

Query: 994  LLYAYTRIASIARTAGI--NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            LLY   RI  I R      +S+D +       V+ E++ E+ L + LL+ ++V++ + +D
Sbjct: 488  LLYTLVRILGIKRKNDFVYDSKDFQY------VNYENKSEWKLIRKLLKFDEVIISIEKD 541

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LC YL+++   F+ FYD    ++++     K +   RL L + TAK +K   ++L
Sbjct: 542  LMPNRLCNYLFELCQTFNRFYDQVPILKEE-----KNIKISRLNLCDLTAKTLKLSLELL 596

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 597  GIETLERM 604



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 16/114 (14%)

Query: 46  HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
            +FGD+QCN  ++L KIF     KKNP DI+    ++    L  N S+AK+   +E A P
Sbjct: 43  EEFGDYQCNVCLSLSKIF-----KKNPRDISNDFINL----LKKNKSIAKLCKSLEIAGP 93

Query: 106 GFVNVFLS-RVYAGEQMKDIIVNGVQPPTLNKKL------RVLVDFSSPNIARK 152
           GF+N+ L   V   E + +I  N    P + K L      +V+VDFSSPNIA++
Sbjct: 94  GFINIKLKDEVLINEIISNIQCNRAGIPLIRKDLDRGLSNKVIVDFSSPNIAKE 147


>gi|428774504|ref|YP_007166292.1| arginyl-tRNA synthetase [Cyanobacterium stanieri PCC 7202]
 gi|428688783|gb|AFZ48643.1| arginyl-tRNA synthetase [Cyanobacterium stanieri PCC 7202]
          Length = 582

 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 163/368 (44%), Positives = 226/368 (61%), Gaps = 41/368 (11%)

Query: 209 DYLSDVFTHAVQVAFPELGDKT----ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           D L  +F  A++  F    D T      V +TN +    FGD+QCN A+ L K  KD   
Sbjct: 3   DTLRQIFATALKQTFG--NDVTFVEPLVVPATNPR----FGDYQCNVALPLAKQLKD--- 53

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI------K 318
             NP  IAQ I          N +L +    +E+A PGF+N+ +   Y  +QI      +
Sbjct: 54  --NPRAIAQRIVD--------NINLDEFCQPLEIAGPGFINITIKPEYIAQQITTAHQDE 103

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + V  + P       + ++DFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GH+V+RLN
Sbjct: 104 RLGVTAITPEG-----KTVIDFSSPNIAKEMHVGHLRSTIIGDSIARILEFRGHNVLRLN 158

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA--DLQAFYKESKKRFDEDEIFKKRAYQCV 436
           HVGDWGTQFGMLIA L+ + P+ LT +  +A  DL   YK++K +FD+D  FK+ A Q V
Sbjct: 159 HVGDWGTQFGMLIAFLRQEKPEVLTTANAVAIGDLVTLYKQAKSKFDQDPEFKEEARQEV 218

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 496
           V LQ  D +  KAW+++C+ SR++FQ IYD L++ LTERGESFY   +  ++  LE++ L
Sbjct: 219 VKLQSKDSESIKAWQLLCEQSRKEFQIIYDLLDIELTERGESFYNPFLPAIINLLEEENL 278

Query: 497 LELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT 551
           L  D G K ++      +    +P+ + KSDGG+ Y T+DLA ++ RIEE+KA  I+YVT
Sbjct: 279 LVEDQGAKCVFLDNFVNKQGDPLPLIVQKSDGGYNYATTDLACLKYRIEEDKATKIIYVT 338

Query: 552 DLGQGVHF 559
           D GQ  HF
Sbjct: 339 DAGQSNHF 346



 Score =  261 bits (667), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/348 (42%), Positives = 203/348 (58%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA--DLQA 622
           STIIGD+I+R+LE+ GH+V+RLNHVGDWGTQFGMLIA L+ + P+ LT +  +A  DL  
Sbjct: 136 STIIGDSIARILEFRGHNVLRLNHVGDWGTQFGMLIAFLRQEKPEVLTTANAVAIGDLVT 195

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
            YK++K +FD+D  FK+ A Q VV LQ  D +  KAW+++C+ SR++FQ IYD L++ LT
Sbjct: 196 LYKQAKSKFDQDPEFKEEARQEVVKLQSKDSESIKAWQLLCEQSRKEFQIIYDLLDIELT 255

Query: 683 ERGESFYQKHMEQLVP---------------------YLEKKG--------------NLS 707
           ERGESFY   +  ++                      ++ K+G              N +
Sbjct: 256 ERGESFYNPFLPAIINLLEEENLLVEDQGAKCVFLDNFVNKQGDPLPLIVQKSDGGYNYA 315

Query: 708 LT------------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
            T            K   I+YVTD GQ  HF  + + A+KA I+ P    +  V FG+VL
Sbjct: 316 TTDLACLKYRIEEDKATKIIYVTDAGQSNHFTQVFQVAQKANIV-PENVELVHVPFGLVL 374

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
            ED KK KTRSG+T++L +LLDE + R+   L+++         E  ++   Q V    +
Sbjct: 375 AEDGKKIKTRSGETIRLKDLLDEAINRAKKDLENRLESEGRNEDESFINHVSQVVGLSAV 434

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  DY FSFDKML  +GNTA YLLYAY R+  I+R   I+
Sbjct: 435 KYADLSQNRTTDYKFSFDKMLALQGNTAPYLLYAYVRVQGISRKGNID 482



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 104/169 (61%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   Q V    +KYADLS NR  DY FSFDKML  +GNTA YLLYAY R+  I+R   I
Sbjct: 422  INHVSQVVGLSAVKYADLSQNRTTDYKFSFDKMLALQGNTAPYLLYAYVRVQGISRKGNI 481

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            + ++L +   +  + ++ E E  LAK LL+++ V+  V +DL  + LC YL+++S  F++
Sbjct: 482  DLDNLEI---NKSIIIKEESELVLAKHLLQLDYVIKEVEKDLLPNRLCLYLFELSQKFNQ 538

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FYD C  ++ + + K+      RL+LA+ TAKV+K    +L I  + +M
Sbjct: 539  FYDQCPILQAEEDVKL-----SRLILADLTAKVIKLGLSLLGISVLERM 582



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 34/150 (22%)

Query: 13  DYLSDVFTHAVQVAFPELGDKT----ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           D L  +F  A++  F    D T      V +TN +    FGD+QCN A+ L K  KD   
Sbjct: 3   DTLRQIFATALKQTFG--NDVTFVEPLVVPATNPR----FGDYQCNVALPLAKQLKD--- 53

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM------K 122
             NP  IAQ I          N +L +    +E A PGF+N+ +   Y  +Q+      +
Sbjct: 54  --NPRAIAQRIVD--------NINLDEFCQPLEIAGPGFINITIKPEYIAQQITTAHQDE 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + V  + P       + ++DFSSPNIA++
Sbjct: 104 RLGVTAITPEG-----KTVIDFSSPNIAKE 128


>gi|434400255|ref|YP_007134259.1| arginyl-tRNA synthetase [Stanieria cyanosphaera PCC 7437]
 gi|428271352|gb|AFZ37293.1| arginyl-tRNA synthetase [Stanieria cyanosphaera PCC 7437]
          Length = 585

 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 150/328 (45%), Positives = 217/328 (66%), Gaps = 27/328 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N A+ L K  K            ++IA  + ++L  +    ++  K E+A  G
Sbjct: 38  KFGDYQSNVALPLAKQLKLA---------PRAIAEKIIAKLEVD----QICQKPEIAGAG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQP-PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N  +   Y   Q+  I  +   G++P P+  K   V+VDFSSPNIAKEMHVGHLRSTI
Sbjct: 85  FINFTIKPDYLVTQLSLIQADQRLGIEPVPSPQK---VIVDFSSPNIAKEMHVGHLRSTI 141

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQAFYK 416
           IGD I+ +LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P+ LT +    + DL + YK
Sbjct: 142 IGDAIANVLEFRGHDVLRLNHVGDWGTQFGMLIAYLKEAYPEALTTADVLDLGDLVSLYK 201

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 476
           ++K RFD+DE FK+ A   VV LQ  + + + AW+++C+ SRR+FQ IYD L++ +TERG
Sbjct: 202 KAKIRFDQDEEFKETARNEVVKLQAGNSESRHAWQLLCEQSRREFQVIYDLLDIKITERG 261

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSD 531
           ESFY   +  +V  L+++GLL+ D G K ++ E   +     +P+ + KSDGG+ Y T+D
Sbjct: 262 ESFYNPFLADIVAELDQQGLLQEDAGAKCIFLEGFTNKAGEPLPLIVQKSDGGYNYATTD 321

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           LAA++ RIE++ A+ I+YVTD+GQ  HF
Sbjct: 322 LAALKYRIEQDNAERIIYVTDVGQSNHF 349



 Score =  273 bits (699), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 156/357 (43%), Positives = 212/357 (59%), Gaps = 56/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-- 615
           H R    STIIGD I+ +LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P+ LT +   
Sbjct: 136 HLR----STIIGDAIANVLEFRGHDVLRLNHVGDWGTQFGMLIAYLKEAYPEALTTADVL 191

Query: 616 PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
            + DL + YK++K RFD+DE FK+ A   VV LQ  + + + AW+++C+ SRR+FQ IYD
Sbjct: 192 DLGDLVSLYKKAKIRFDQDEEFKETARNEVVKLQAGNSESRHAWQLLCEQSRREFQVIYD 251

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------- 713
            L++ +TERGESFY   +  +V  L+++G L              T K G          
Sbjct: 252 LLDIKITERGESFYNPFLADIVAELDQQGLLQEDAGAKCIFLEGFTNKAGEPLPLIVQKS 311

Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
                                    I+YVTD+GQ  HF  + + AKKAGIL P K  +  
Sbjct: 312 DGGYNYATTDLAALKYRIEQDNAERIIYVTDVGQSNHFAAVFQVAKKAGIL-PEKVEVVH 370

Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQ 806
           V FG+VLGED KK KTRSG+T+KL ELLDE + ++ + L+ + +      TE  +++  Q
Sbjct: 371 VPFGLVLGEDGKKLKTRSGETIKLKELLDEAIIQARNDLESRLQEEGREETEEFINQVAQ 430

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
            V    +KYADLS NR  DY FS+ KML  +GNTA YLLYAY R+  I+R   I+ E
Sbjct: 431 TVGISAVKYADLSQNRTTDYKFSYSKMLALQGNTAPYLLYAYVRVQGISRKGEIDFE 487



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            +++  Q V    +KYADLS NR  DY FS+ KML  +GNTA YLLYAY R+  I+R   I
Sbjct: 425  INQVAQTVGISAVKYADLSQNRTTDYKFSYSKMLALQGNTAPYLLYAYVRVQGISRKGEI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            + E L      T + L    E  LAK +L++ +++  V R+L  + LC Y+Y++S  F++
Sbjct: 485  DFEKL---GTHTKIVLAESTELILAKHILQLGEIIQEVERELLPNRLCLYIYELSQKFNQ 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY++C  ++ +   +     T RL+LA+ TA+ +K    +L I  V +M
Sbjct: 542  FYESCPILQVEEPSR-----TSRLILADLTARTIKLGLSLLGISVVERM 585



 Score = 44.7 bits (104), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 20/110 (18%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q N A+ L K  K            ++IA  + ++L  +    ++  K E A  G
Sbjct: 38  KFGDYQSNVALPLAKQLKLA---------PRAIAEKIIAKLEVD----QICQKPEIAGAG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQP-PTLNKKLRVLVDFSSPNIARK 152
           F+N  +   Y   Q+  I  +   G++P P+  K   V+VDFSSPNIA++
Sbjct: 85  FINFTIKPDYLVTQLSLIQADQRLGIEPVPSPQK---VIVDFSSPNIAKE 131


>gi|31747865|gb|AAN10190.1| argynyl tRNA synthetase [Candidatus Fritschea bemisiae]
          Length = 578

 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/363 (41%), Positives = 230/363 (63%), Gaps = 27/363 (7%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           LS++       +  ++    A +A   +    +FG +QCN AM L K        ++P +
Sbjct: 4   LSEILQARATDSLKKILKSDAPLAEIVQSTHPQFGHYQCNSAMELAK-----KTSRHPRE 58

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQP 327
           IA+ I          N  L + ++K+EVA PGFVN+ L + +  +++  +  +   G  P
Sbjct: 59  IAEQIVK--------NWGLDERVEKLEVAGPGFVNITLKKEFLDQELNRLATDRRLGASP 110

Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
             L K+ +++V+FSSPNIAKE+HVGHLRSTIIG++++RL E+LGH V+RLNH+GDWGTQF
Sbjct: 111 --LKKRKKIIVEFSSPNIAKELHVGHLRSTIIGESLARLFEFLGHQVLRLNHIGDWGTQF 168

Query: 388 GMLIAHLQDKFPDYLTKSPPIADLQA---FYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           GMLIA+L++ F   +      ADL A   +Y+ESKK FD +  FKKRA   VV LQ+ + 
Sbjct: 169 GMLIAYLKE-FQKEVLSGEKKADLPALMDWYRESKKLFDTNPAFKKRAQIEVVNLQKKEK 227

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           +    WE I ++SR+ FQ+IYD L+V+L ERGES+Y + + +++   E KG++++ DG K
Sbjct: 228 EALAVWETIREISRKGFQEIYDWLDVSLIERGESYYNETLPKVIEEYEAKGIIQISDGAK 287

Query: 505 IMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
            ++     G+D+  +P+ + KSDGG+ Y T+D AA+ QRI  EK D I+YV D GQ +HF
Sbjct: 288 CVFLEGFKGKDQAPLPLILQKSDGGYNYATTDTAALFQRIHIEKGDRILYVVDAGQRLHF 347

Query: 560 RLL 562
           +++
Sbjct: 348 QMV 350



 Score =  239 bits (609), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 143/347 (41%), Positives = 198/347 (57%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA-- 622
           STIIG++++RL E+LGH V+RLNH+GDWGTQFGMLIA+L++ F   +      ADL A  
Sbjct: 137 STIIGESLARLFEFLGHQVLRLNHIGDWGTQFGMLIAYLKE-FQKEVLSGEKKADLPALM 195

Query: 623 -FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL 681
            +Y+ESKK FD +  FKKRA   VV LQ+ + +    WE I ++SR+ FQ+IYD L+V+L
Sbjct: 196 DWYRESKKLFDTNPAFKKRAQIEVVNLQKKEKEALAVWETIREISRKGFQEIYDWLDVSL 255

Query: 682 TERGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
            ERGES+Y + + +++   E KG                         L L K  G    
Sbjct: 256 IERGESYYNETLPKVIEEYEAKGIIQISDGAKCVFLEGFKGKDQAPLPLILQKSDGGYNY 315

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              I+YV D GQ +HF+++   A KAG  +P +  ++ V FGVV
Sbjct: 316 ATTDTAALFQRIHIEKGDRILYVVDAGQRLHFQMVFAAAFKAGYYDPARVEIEHVPFGVV 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D KKFKTRSG T KL +LL E + R+  K+  KNR   +   +L +  + +    +K
Sbjct: 376 LGADGKKFKTRSGQTEKLIDLLKEAVYRA--KILLKNRLPSVEEKDLEKLAKILGINSVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DY+F++D+ML+  GNTA YLLY+Y RI  I      N
Sbjct: 434 YADLSCHRLKDYIFNYDRMLNFEGNTAAYLLYSYVRIQGIKEKCNRN 480



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            KNR   +   +L +  + +    +KYADLS +R  DY+F++D+ML+  GNTA YLLY+Y 
Sbjct: 409  KNRLPSVEEKDLEKLAKILGINSVKYADLSCHRLKDYIFNYDRMLNFEGNTAAYLLYSYV 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI  I      N + L   + S  + L H  E AL   L +  + L L+ RDL  + L +
Sbjct: 469  RIQGIKEKCNRNIDLL---SHSARIQLTHPTEIALGLKLRQFGEALTLMDRDLLPNRLSD 525

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++  F  F+ +C         K       RLLL E T+++++K   IL ++T+ +M
Sbjct: 526  YLYHLAEKFHAFFRDCRV-------KGSPQEDSRLLLCELTSQILQKGLYILGLKTMDRM 578



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 18/141 (12%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           LS++       +  ++    A +A   +    +FG +QCN AM L K        ++P +
Sbjct: 4   LSEILQARATDSLKKILKSDAPLAEIVQSTHPQFGHYQCNSAMELAK-----KTSRHPRE 58

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQP 131
           IA+ I          N  L + ++K+E A PGFVN+ L + +  +++  +  +   G  P
Sbjct: 59  IAEQIVK--------NWGLDERVEKLEVAGPGFVNITLKKEFLDQELNRLATDRRLGASP 110

Query: 132 PTLNKKLRVLVDFSSPNIARK 152
             L K+ +++V+FSSPNIA++
Sbjct: 111 --LKKRKKIIVEFSSPNIAKE 129


>gi|428308161|ref|YP_007144986.1| arginyl-tRNA synthetase [Crinalium epipsammum PCC 9333]
 gi|428249696|gb|AFZ15476.1| arginyl-tRNA synthetase [Crinalium epipsammum PCC 9333]
          Length = 585

 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 155/327 (47%), Positives = 209/327 (63%), Gaps = 25/327 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N  ++L K        K P  IAQ+I   +       P +        VA  G
Sbjct: 38  KFGDYQSNAPLSLTKRLG-----KPPRAIAQAIVQHLDINDICQPPV--------VAGAG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N  L   Y   Q+  I  N   GV+ P    K RV+VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85  FINFTLKPEYLEAQLNAIQANARLGVESP--KTKERVVVDFSSPNIAKEMHVGHLRSTII 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKE 417
           GD I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P+ LT +    + DL + Y++
Sbjct: 143 GDCIARILEFWGHDVLRLNHVGDWGTQFGMLIAYLREAYPEALTTANALDLGDLVSLYRQ 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +KKRFDED+ F++ A Q VV LQ    D  +AW+++C+ SRR+FQ IYD L+V L ERGE
Sbjct: 203 AKKRFDEDQEFQELARQEVVKLQAGAEDTNRAWQLLCEQSRREFQVIYDLLDVHLQERGE 262

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDL 532
           SFY   +  ++  L+K GLL  + G   ++      ++   +P+ + KSDGG+ Y T+DL
Sbjct: 263 SFYNPLLPAVLEDLDKLGLLVENAGAMCVFLDGFTNKEGQPLPLIVKKSDGGYNYATTDL 322

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
           AA+R RIE++ A+ I+YVTD GQ  HF
Sbjct: 323 AALRYRIEQDGAERIIYVTDAGQANHF 349



 Score =  266 bits (681), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 151/348 (43%), Positives = 205/348 (58%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P+ LT +  +   DL +
Sbjct: 139 STIIGDCIARILEFWGHDVLRLNHVGDWGTQFGMLIAYLREAYPEALTTANALDLGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
            Y+++KKRFDED+ F++ A Q VV LQ    D  +AW+++C+ SRR+FQ IYD L+V L 
Sbjct: 199 LYRQAKKRFDEDQEFQELARQEVVKLQAGAEDTNRAWQLLCEQSRREFQVIYDLLDVHLQ 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  ++  L+K G L              T K G                 
Sbjct: 259 ERGESFYNPLLPAVLEDLDKLGLLVENAGAMCVFLDGFTNKEGQPLPLIVKKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF    + A++A  + P+   +  V FG+VL
Sbjct: 319 TTDLAALRYRIEQDGAERIIYVTDAGQANHFAQFFQVARRAEWI-PDDVEVVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KK KTRSG+TV+L +LLDE + R+   LK + +      TE  +    + V    +
Sbjct: 378 GEDNKKLKTRSGETVRLRDLLDEAIARARTDLKTRLQEEGRQETEEFIENVAKTVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  +Y+FS+DKML  +GNTA Y+LYAY RI  I+R  GI+
Sbjct: 438 KYADLSQNRTSNYMFSYDKMLALQGNTAPYMLYAYVRIQGISRKGGID 485



 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 110/184 (59%), Gaps = 10/184 (5%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +L+++ R    T   +    + V    +KYADLS NR  +Y+FS+DKML  +GNTA Y+L
Sbjct: 412  RLQEEGRQE--TEEFIENVAKTVGISAVKYADLSQNRTSNYMFSYDKMLALQGNTAPYML 469

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YAY RI  I+R  GI+ ++L   A+   + L+ E E  LAK LL++++VL  V +DL  +
Sbjct: 470  YAYVRIQGISRKGGIDFDNLGADAK---ILLQEETELVLAKHLLQLSEVLREVEQDLMPN 526

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1115
             LC+YL+++S  F++FYD C  ++ +   +I      RL L + TA+ +K    +L I  
Sbjct: 527  RLCQYLFELSQKFNQFYDRCPVLQAEEPQRI-----SRLSLCDLTARTLKLGLTLLGIPV 581

Query: 1116 VHKM 1119
            + +M
Sbjct: 582  LERM 585



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 51/109 (46%), Gaps = 18/109 (16%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q N  ++L K        K P  IAQ+I   +       P +         A  G
Sbjct: 38  KFGDYQSNAPLSLTKRLG-----KPPRAIAQAIVQHLDINDICQPPVV--------AGAG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N  L   Y   Q+  I  N   GV+ P    K RV+VDFSSPNIA++
Sbjct: 85  FINFTLKPEYLEAQLNAIQANARLGVESP--KTKERVVVDFSSPNIAKE 131


>gi|118381734|ref|XP_001024027.1| arginyl-tRNA synthetase family protein [Tetrahymena thermophila]
 gi|89305794|gb|EAS03782.1| arginyl-tRNA synthetase family protein [Tetrahymena thermophila
           SB210]
          Length = 616

 Score =  280 bits (717), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/363 (41%), Positives = 216/363 (59%), Gaps = 63/363 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I R+ E+  H+V+R+NH+GDWGTQFGMLI +++ K+P++L +   ++DL  FY
Sbjct: 156 STIIGESICRIFEFQNHEVLRINHLGDWGTQFGMLITYMKRKYPNFLNEPIDLSDLTMFY 215

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KESKK FDED  FKK A   VV LQ  DP+ +KAWE++C++SRR+F +IY RL++TL + 
Sbjct: 216 KESKKLFDEDPEFKKTAQLTVVDLQSGDPECRKAWEILCEISRREFTEIYKRLDITLEDF 275

Query: 685 GESFYQKHMEQLVP-----------------YLEKKGN---LSLTKKLG----------- 713
           GESFY   +  ++                  ++EK  N   L + KK G           
Sbjct: 276 GESFYNDKIPAVIQDLKDAGMLVESDGAQCVFIEKYKNQPPLFIVKKDGGYGYDSTDMAC 335

Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                       +VY+TD+GQ  HF  +   A+K G   P  TR + +GFG+V GED K+
Sbjct: 336 IKYRLKTLNCNRLVYITDVGQQPHFDYIIAAAEKIGWHVPPTTRAEHMGFGIVQGEDGKR 395

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKD--------------------KNRHTELTPTEL 801
           F+TRS +TVKL +LLDE   R+L+K+K+                    K  +T+L+  E 
Sbjct: 396 FRTRSSETVKLKDLLDEARERALEKIKERISGGAKEEGAEEDEEEKENKGNYTKLSEEEY 455

Query: 802 SEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            +A + +    IKY DL  NR  +Y FS+DKMLD +GNTAVYLLY+Y R+ SI R +G+ 
Sbjct: 456 LDAAEKMGMAAIKYYDLRQNRISNYNFSYDKMLDTKGNTAVYLLYSYARLCSIIRKSGVQ 515

Query: 862 SED 864
           SE+
Sbjct: 516 SEE 518



 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 145/342 (42%), Positives = 216/342 (63%), Gaps = 23/342 (6%)

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVG 352
           I+K+ V   GF+ + L +    ++I +I+ NG+  PT  KK ++ VDFSSPNIAKEMHVG
Sbjct: 94  IEKLGVTDQGFLTIKLKQQVIEDEINNILKNGLNYPT-EKKQKIAVDFSSPNIAKEMHVG 152

Query: 353 HLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412
           HLRSTIIG++I R+ E+  H+V+R+NH+GDWGTQFGMLI +++ K+P++L +   ++DL 
Sbjct: 153 HLRSTIIGESICRIFEFQNHEVLRINHLGDWGTQFGMLITYMKRKYPNFLNEPIDLSDLT 212

Query: 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL 472
            FYKESKK FDED  FKK A   VV LQ  DP+ +KAWE++C++SRR+F +IY RL++TL
Sbjct: 213 MFYKESKKLFDEDPEFKKTAQLTVVDLQSGDPECRKAWEILCEISRREFTEIYKRLDITL 272

Query: 473 TERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED-RGSIPMTIVKSDGGFTYDTSD 531
            + GESFY   +  ++  L+  G+L   DG + ++ E  +   P+ IVK DGG+ YD++D
Sbjct: 273 EDFGESFYNDKIPAVIQDLKDAGMLVESDGAQCVFIEKYKNQPPLFIVKKDGGYGYDSTD 332

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDV---VRLNH 588
           +A I+ R++    + +VY+TD+GQ  HF          D I    E +G  V    R  H
Sbjct: 333 MACIKYRLKTLNCNRLVYITDVGQQPHF----------DYIIAAAEKIGWHVPPTTRAEH 382

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           +G     FG++      +F    T+S     L+    E+++R
Sbjct: 383 MG-----FGIVQGEDGKRFR---TRSSETVKLKDLLDEARER 416



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 111/181 (61%), Gaps = 7/181 (3%)

Query: 939  DKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAY 998
            +K  +T+L+  E  +A + +    IKY DL  NR  +Y FS+DKMLD +GNTAVYLLY+Y
Sbjct: 443  NKGNYTKLSEEEYLDAAEKMGMAAIKYYDLRQNRISNYNFSYDKMLDTKGNTAVYLLYSY 502

Query: 999  TRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLC 1058
             R+ SI R +G+ SE+L    Q+    + H +E  +A  L++  DVL  VT DL ++ L 
Sbjct: 503  ARLCSIIRKSGVQSEELCKIIQTQGFKISHPQERIIASLLIKFPDVLDQVTEDLAINRLT 562

Query: 1059 EYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHK 1118
            +Y+YD++   +E Y   +    ++E K+      R+LL EAT +V++KCF ++ I+ + K
Sbjct: 563  DYMYDLACKVAEGYRKYHI--NNSEDKLT-----RILLIEATRQVLEKCFYLVGIKPLEK 615

Query: 1119 M 1119
            +
Sbjct: 616  I 616



 Score = 42.4 bits (98), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           I+K+     GF+ + L +    +++ +I+ NG+  PT  KK ++ VDFSSPNIA++
Sbjct: 94  IEKLGVTDQGFLTIKLKQQVIEDEINNILKNGLNYPT-EKKQKIAVDFSSPNIAKE 148


>gi|33864335|ref|NP_895895.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|39932085|sp|Q7V493.1|SYR_PROMM RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|33641115|emb|CAE22244.1| Arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
          Length = 612

 Score =  280 bits (715), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 158/383 (41%), Positives = 220/383 (57%), Gaps = 42/383 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVH-----KFGDFQCNDAMALCKIF 259
           +S+   L      A+  AFPE         +  +  +      +FGDFQ N A+ L K  
Sbjct: 11  LSLAHALESQLRAAIDRAFPEAAASARESGTGLDPQLAPASKPEFGDFQANAALPLAKPL 70

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K            + IA+ +  +L  + +   +    E+A PGF+N+ +       +++ 
Sbjct: 71  KQP---------PRQIAAAIVDQLMVDTAFTAICLTPEIAGPGFINLTVRPECLAAEVQA 121

Query: 320 IIV------------NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLL 367
            +             N  Q PT      V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+L
Sbjct: 122 RLADARLGVPLVEGDNDGQQPT-----PVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVL 176

Query: 368 EYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDED 425
           E+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL  FY+++K+RFD+D
Sbjct: 177 EFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALETADAVDLGDLVVFYRQAKQRFDDD 236

Query: 426 EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHME 485
           E F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL+V L ERGESFY  ++E
Sbjct: 237 EAFQTTSREEVVKLQGGDPISLKAWSLLCDQSRREFQKIYDRLDVRLNERGESFYNAYLE 296

Query: 486 QLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI- 539
            +V  L   GLL  DDG + ++     G+D   +P+ + KSDGGF Y T+DLAA+R R  
Sbjct: 297 SVVEDLNVSGLLVSDDGAQCVFLEGVTGKDGKPLPVIVQKSDGGFNYATTDLAAMRYRFA 356

Query: 540 ---EEEKADWIVYVTDLGQGVHF 559
              + + A  ++YVTD GQ  HF
Sbjct: 357 APPQGDGARRVIYVTDAGQANHF 379



 Score =  267 bits (683), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 152/350 (43%), Positives = 201/350 (57%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL  
Sbjct: 165 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALETADAVDLGDLVV 224

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD+DE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL+V L 
Sbjct: 225 FYRQAKQRFDDDEAFQTTSREEVVKLQGGDPISLKAWSLLCDQSRREFQKIYDRLDVRLN 284

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY  ++E +V  L   G L             +T K G                 
Sbjct: 285 ERGESFYNAYLESVVEDLNVSGLLVSDDGAQCVFLEGVTGKDGKPLPVIVQKSDGGFNYA 344

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 ++YVTD GQ  HF  + + A++AG + P+  R+  V F
Sbjct: 345 TTDLAAMRYRFAAPPQGDGARRVIYVTDAGQANHFAGVFQVAQRAGWI-PDAGRLQHVPF 403

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L ELLDE + R+   L+ + +       E  + +    V 
Sbjct: 404 GLVQGEDGKKLKTRAGDTVRLRELLDEAVERAESDLRRRLQEEGRDEDESFIEQVATTVG 463

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 464 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 513



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 11/162 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G    DL V
Sbjct: 462  VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLDV 517

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
               +  +     +E+AL + LL+ + V+  V  +L  + LC YL+++S  F+ FYD    
Sbjct: 518  T--TAELQFSETQEWALVRELLKFDAVIAEVEEELLPNRLCTYLFELSQVFNRFYDQVPV 575

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ +   +     + RL L   TA  +K    +L I T+ +M
Sbjct: 576  LKAEQPSR-----SCRLALCRLTADTLKLGLSLLGIPTLERM 612



 Score = 45.4 bits (106), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 33/162 (20%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVH-----KFGDFQCNDAMALCKIF 63
           +S+   L      A+  AFPE         +  +  +      +FGDFQ N A+ L K  
Sbjct: 11  LSLAHALESQLRAAIDRAFPEAAASARESGTGLDPQLAPASKPEFGDFQANAALPLAKPL 70

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVF------------ 111
           K            + IA+ +  +L  + +   +    E A PGF+N+             
Sbjct: 71  KQP---------PRQIAAAIVDQLMVDTAFTAICLTPEIAGPGFINLTVRPECLAAEVQA 121

Query: 112 -LSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            L+    G  + +   +G QP        V+VDFSSPNIA++
Sbjct: 122 RLADARLGVPLVEGDNDGQQPTP------VVVDFSSPNIAKE 157


>gi|71028762|ref|XP_764024.1| arginyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68350978|gb|EAN31741.1| arginyl-tRNA synthetase, putative [Theileria parva]
          Length = 629

 Score =  279 bits (714), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 152/393 (38%), Positives = 233/393 (59%), Gaps = 55/393 (13%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q +DA++L K+ KD     +P ++A+ + S +TS   ++         I V+  G
Sbjct: 40  KFGDYQWSDALSLFKVAKDHLSVNSPQELAEMVKSNITSNSFSS---------INVSPQG 90

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLR-----VLVDFSSPNIAKEMHVGHLRST 357
           F+   LS  +  ++I+ +   G   P+++K  +     V++DFSSPNIAKEMHVGHLRST
Sbjct: 91  FMTFVLSNDWIEQEIRSLAKYG---PSVDKSTKKHGETVVIDFSSPNIAKEMHVGHLRST 147

Query: 358 IIGDT-----------------------ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL 394
           +IGD+                       ++R+LE+ G+ V R+NH+GDWGTQFGMLI ++
Sbjct: 148 VIGDSLGTLHNYLTKYLYITLLRRIYLFVARVLEFFGYKVRRINHLGDWGTQFGMLIEYM 207

Query: 395 QDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMIC 454
            +K+PD+++  P I+D   FYKE+K R D DE FKK++   VV LQ  D + K  W+++C
Sbjct: 208 FEKYPDFVSNMPSISDFTKFYKEAKLRMDVDEEFKKKSRSRVVKLQSGDEESKLVWKVLC 267

Query: 455 DVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSI 514
           D+S   F +IY RL++     GESFY   + ++V  L+ +G+ +  +G  +++  D   +
Sbjct: 268 DISLDSFNRIYKRLDIKFEIFGESFYNDMIPEIVKDLQDRGIAQESEGALVIF-TDGSPV 326

Query: 515 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISR 574
           P+ +VKSDGGF YD++D+A +R R  E KADWI+YVTD+GQ  HF+ L +S  +      
Sbjct: 327 PLMLVKSDGGFGYDSTDMACLRYRTHELKADWIIYVTDIGQSEHFQKLFKSAQLAGWCEN 386

Query: 575 LLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
                    VR++HVG     FGM+   L +KF
Sbjct: 387 ---------VRIDHVG-----FGMVQNELGEKF 405



 Score =  249 bits (637), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 141/339 (41%), Positives = 196/339 (57%), Gaps = 47/339 (13%)

Query: 572 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 631
           ++R+LE+ G+ V R+NH+GDWGTQFGMLI ++ +K+PD+++  P I+D   FYKE+K R 
Sbjct: 176 VARVLEFFGYKVRRINHLGDWGTQFGMLIEYMFEKYPDFVSNMPSISDFTKFYKEAKLRM 235

Query: 632 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQK 691
           D DE FKK++   VV LQ  D + K  W+++CD+S   F +IY RL++     GESFY  
Sbjct: 236 DVDEEFKKKSRSRVVKLQSGDEESKLVWKVLCDISLDSFNRIYKRLDIKFEIFGESFYND 295

Query: 692 HMEQLVPYLEKKG------------------NLSLTKKLG-------------------- 713
            + ++V  L+ +G                   L L K  G                    
Sbjct: 296 MIPEIVKDLQDRGIAQESEGALVIFTDGSPVPLMLVKSDGGFGYDSTDMACLRYRTHELK 355

Query: 714 ---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTV 770
              I+YVTD+GQ  HF+ L + A+ AG       R+D VGFG+V  E  +KFKTRSGDTV
Sbjct: 356 ADWIIYVTDIGQSEHFQKLFKSAQLAGWCE--NVRIDHVGFGMVQNELGEKFKTRSGDTV 413

Query: 771 KLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830
           KL +LLDE +RRS  KL+ + R   +    L E  +A+ YG +KY DL+H+   +Y FSF
Sbjct: 414 KLVDLLDEAVRRS--KLELEKRDPNIP--NLDEVAEALGYGSVKYFDLNHSVTTNYKFSF 469

Query: 831 DKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPD 869
           DKMLD RGNTAVY+ Y+Y RI  I + A   + D  E +
Sbjct: 470 DKMLDPRGNTAVYMFYSYARICQIFKKAESKTADGTETN 508



 Score =  119 bits (299), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 101/197 (51%), Gaps = 35/197 (17%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA-- 1008
            L E  +A+ YG +KY DL+H+   +Y FSFDKMLD RGNTAVY+ Y+Y RI  I + A  
Sbjct: 440  LDEVAEALGYGSVKYFDLNHSVTTNYKFSFDKMLDPRGNTAVYMFYSYARICQIFKKAES 499

Query: 1009 ----GINSEDLRVA---------------AQSTP-------VSLEHEKEFALAKTLLRMN 1042
                G  + ++  +                 S P       + +EH  E ALAK LL+  
Sbjct: 500  KTADGTETNNVETSDNRPVIVEDSVEVNGTSSVPNEVDLSKLVIEHPTEVALAKCLLKFP 559

Query: 1043 DVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAK 1102
             +L  + +DL ++ L +YLY++S  FS FY  C  +          +   RL+L   T +
Sbjct: 560  SILDQIHKDLAINRLTDYLYELSVQFSSFYTKCKVVG-------DPLQESRLILCSCTKE 612

Query: 1103 VMKKCFDILNIRTVHKM 1119
            VM+ CF ++ IR + ++
Sbjct: 613  VMRTCFQLIGIRPLERI 629



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 17/111 (15%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q +DA++L K+ KD     +P ++A+ + S +TS   ++         I  +  G
Sbjct: 40  KFGDYQWSDALSLFKVAKDHLSVNSPQELAEMVKSNITSNSFSS---------INVSPQG 90

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLR-----VLVDFSSPNIARK 152
           F+   LS  +  ++++ +   G   P+++K  +     V++DFSSPNIA++
Sbjct: 91  FMTFVLSNDWIEQEIRSLAKYG---PSVDKSTKKHGETVVIDFSSPNIAKE 138


>gi|157412544|ref|YP_001483410.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|157387119|gb|ABV49824.1| Arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 604

 Score =  279 bits (713), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 156/336 (46%), Positives = 210/336 (62%), Gaps = 27/336 (8%)

Query: 242 HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
            +FGD+QCN  ++L KI+K     KNP DI+    ++    L  N S++K+   +E+A P
Sbjct: 43  EEFGDYQCNVCLSLSKIYK-----KNPRDISNDFINL----LNKNKSISKLCKSLEIAGP 93

Query: 302 GFVNVFLSRVYAGEQIK-DIIVNGVQPPTLNKKL------RVLVDFSSPNIAKEMHVGHL 354
           GF+N+ L       +IK +I  N    P + K L      +V+VDFSSPNIAKEMHVGHL
Sbjct: 94  GFINIKLKDAVLINEIKANIQCNRAGIPLIKKDLDSGLSNKVIVDFSSPNIAKEMHVGHL 153

Query: 355 RSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQ 412
           RSTIIGD+ISR+ E  G++V+RLNHVGDWGTQFGMLI  L+D + + L +     I+DL 
Sbjct: 154 RSTIIGDSISRIFELRGYEVLRLNHVGDWGTQFGMLITQLKDLYSNDLEEIGKIKISDLV 213

Query: 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL 472
            FYKESKKRFD +  F+KR+ + VV LQ  D    KAW+++CD SR++F +IY  L + +
Sbjct: 214 EFYKESKKRFDNESEFQKRSREEVVKLQSGDIKSIKAWKLLCDQSRKEFDEIYKNLKIKI 273

Query: 473 TERGESFYQKHMEQLVPYLEKKGLLELDDGRKI-----MWGEDRGSIPMTIVKSDGGFTY 527
            ERGESFY   ++ L+  L  K +L  D G K      M  ++   +P+ I K DGGF Y
Sbjct: 274 EERGESFYNPFLKSLIDDLNLKKILVEDQGAKCVFLDGMTNKEGKPLPLIIQKKDGGFNY 333

Query: 528 DTSDLAAIRQRIEE----EKADWIVYVTDLGQGVHF 559
            T+DLAAIR R  +    + A  I+YVTD GQ  HF
Sbjct: 334 ATTDLAAIRYRFNQPPNGDDASRIIYVTDHGQANHF 369



 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 146/349 (41%), Positives = 196/349 (56%), Gaps = 60/349 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQA 622
           STIIGD+ISR+ E  G++V+RLNHVGDWGTQFGMLI  L+D + + L +     I+DL  
Sbjct: 155 STIIGDSISRIFELRGYEVLRLNHVGDWGTQFGMLITQLKDLYSNDLEEIGKIKISDLVE 214

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYKESKKRFD +  F+KR+ + VV LQ  D    KAW+++CD SR++F +IY  L + + 
Sbjct: 215 FYKESKKRFDNESEFQKRSREEVVKLQSGDIKSIKAWKLLCDQSRKEFDEIYKNLKIKIE 274

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   ++ L+  L  K  L             +T K G                 
Sbjct: 275 ERGESFYNPFLKSLIDDLNLKKILVEDQGAKCVFLDGMTNKEGKPLPLIIQKKDGGFNYA 334

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 I+YVTD GQ  HF  + + AKKA  + P   ++D V F
Sbjct: 335 TTDLAAIRYRFNQPPNGDDASRIIYVTDHGQANHFAGVFQVAKKAKWI-PENRQVDHVPF 393

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQA 807
           G+V G D KK KTR G+T++L +LL+E +RR+    L +LKD++R+   T   ++   + 
Sbjct: 394 GLVQGIDGKKLKTREGETIRLKDLLNEAVRRAKEDLLKRLKDEDRYE--TEEFIANTSRI 451

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           +  G +KYADLS NR  +Y FSFDKML   GNTA YLLY   RI  I R
Sbjct: 452 IGLGAVKYADLSQNRITNYQFSFDKMLSLNGNTAPYLLYTLVRILGIKR 500



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 15/188 (7%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            L +LKD++R+   T   ++   + +  G +KYADLS NR  +Y FSFDKML   GNTA Y
Sbjct: 430  LKRLKDEDRYE--TEEFIANTSRIIGLGAVKYADLSQNRITNYQFSFDKMLSLNGNTAPY 487

Query: 994  LLYAYTRIASIARTAGI--NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            LLY   RI  I R      +S+DL+       ++ EH+ E+ L + LL+ ++V++ + +D
Sbjct: 488  LLYTLVRILGIKRKNDFVYDSKDLQY------INYEHKSEWKLIRKLLKFDEVIISIEKD 541

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LC YL+++   F+ FYD    ++++     K +   RL L + TAK +K   ++L
Sbjct: 542  LMPNRLCNYLFELCQTFNRFYDQVPILKEE-----KYIKISRLNLCDLTAKTLKLSLELL 596

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 597  GIETLERM 604



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 16/114 (14%)

Query: 46  HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
            +FGD+QCN  ++L KI+     KKNP DI+    ++    L  N S++K+   +E A P
Sbjct: 43  EEFGDYQCNVCLSLSKIY-----KKNPRDISNDFINL----LNKNKSISKLCKSLEIAGP 93

Query: 106 GFVNVFLS-RVYAGEQMKDIIVNGVQPPTLNKKL------RVLVDFSSPNIARK 152
           GF+N+ L   V   E   +I  N    P + K L      +V+VDFSSPNIA++
Sbjct: 94  GFINIKLKDAVLINEIKANIQCNRAGIPLIKKDLDSGLSNKVIVDFSSPNIAKE 147


>gi|116072008|ref|ZP_01469276.1| arginyl-tRNA synthetase [Synechococcus sp. BL107]
 gi|116065631|gb|EAU71389.1| arginyl-tRNA synthetase [Synechococcus sp. BL107]
          Length = 590

 Score =  278 bits (712), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 221/370 (59%), Gaps = 29/370 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           +S+   L      A+Q AFP+     D   + AS  E     FGDFQ N A+ L K  K 
Sbjct: 2   LSLSQTLDAQLRAAMQRAFPDAEATLDPQLAAASKPE-----FGDFQANGALPLAKPLKQ 56

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
                      + IA+ +  +L+ + +   +    ++A PGF+N+ +      E++   +
Sbjct: 57  P---------PRQIATAIVDQLSGDEAFNALCLAPQIAGPGFINLTIRPERLAEELAARL 107

Query: 322 -VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
             + +  P ++    V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLNHV
Sbjct: 108 GTDRLGVPAVDNAAPVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHSVLRLNHV 167

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLI HL+   P+ L  +  +   DL AFY+E+KKRFD+D+ F+  +   VV 
Sbjct: 168 GDWGTQFGMLITHLKQVAPETLDTADAVDLGDLVAFYREAKKRFDDDDAFQATSRDEVVK 227

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ  DP   KAW ++CD SRR+FQK+YDRL++ L+ERGESFY  ++  ++  L+   LL 
Sbjct: 228 LQGGDPVSLKAWGLLCDQSRREFQKLYDRLDIRLSERGESFYNPYLPAVLEGLKAVDLLV 287

Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEE----EKADWIVY 549
            DD  + ++     G+D   +P+ + K DGGF Y T+DLAAIR R       + A  ++Y
Sbjct: 288 TDDDAQCVFLEGVTGKDGNPLPVIVQKRDGGFNYATTDLAAIRYRFASSPAGDAAQRVIY 347

Query: 550 VTDLGQGVHF 559
           VTD GQ  HF
Sbjct: 348 VTDAGQANHF 357



 Score =  270 bits (689), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 152/350 (43%), Positives = 208/350 (59%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL A
Sbjct: 143 STIIGDSLARVLEFRGHSVLRLNHVGDWGTQFGMLITHLKQVAPETLDTADAVDLGDLVA 202

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFD+D+ F+  +   VV LQ  DP   KAW ++CD SRR+FQK+YDRL++ L+
Sbjct: 203 FYREAKKRFDDDDAFQATSRDEVVKLQGGDPVSLKAWGLLCDQSRREFQKLYDRLDIRLS 262

Query: 683 ERGESFYQKHMEQLVPYLE---------------------KKGN---LSLTKKLG----- 713
           ERGESFY  ++  ++  L+                     K GN   + + K+ G     
Sbjct: 263 ERGESFYNPYLPAVLEGLKAVDLLVTDDDAQCVFLEGVTGKDGNPLPVIVQKRDGGFNYA 322

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 ++YVTD GQ  HF  + + A++AG + P + R++ V F
Sbjct: 323 TTDLAAIRYRFASSPAGDAAQRVIYVTDAGQANHFAGVFQVAERAGWI-PAEARLEHVPF 381

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L +LLDE + RS   L+ + +  E T ++  +S     V 
Sbjct: 382 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERSEQDLRSRLQEEERTESDAFISHVATTVG 441

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 442 LAAVKYADLSQNRLTNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 491



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 13/193 (6%)

Query: 929  GLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
             + RS   L+ + +  E T ++  +S     V    +KYADLS NR  +Y FSFD+ML  
Sbjct: 409  AVERSEQDLRSRLQEEERTESDAFISHVATTVGLAAVKYADLSQNRLTNYQFSFDRMLAL 468

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
            +GNTA YLLYA  RIA IAR  G    DL V+  +  +     +E+AL + LL+ + V++
Sbjct: 469  QGNTAPYLLYAVVRIAGIARKGG----DLGVS--NAALQFSEPQEWALVRELLKFDRVIV 522

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             V  +L  + LC YL+++S  F+ FYD    ++ +      +    RL L   TA  ++ 
Sbjct: 523  EVEDELLPNRLCSYLFELSQVFNRFYDQVPVLKAE-----PSALASRLALCRHTADTLRC 577

Query: 1107 CFDILNIRTVHKM 1119
               +L I T+ +M
Sbjct: 578  GLALLGIPTLERM 590



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 18/148 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           +S+   L      A+Q AFP+     D   + AS  E     FGDFQ N A+ L K  K 
Sbjct: 2   LSLSQTLDAQLRAAMQRAFPDAEATLDPQLAAASKPE-----FGDFQANGALPLAKPLKQ 56

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
                      + IA+ +  +L+ + +   +    + A PGF+N+ +      E++   +
Sbjct: 57  P---------PRQIATAIVDQLSGDEAFNALCLAPQIAGPGFINLTIRPERLAEELAARL 107

Query: 126 -VNGVQPPTLNKKLRVLVDFSSPNIARK 152
             + +  P ++    V+VDFSSPNIA++
Sbjct: 108 GTDRLGVPAVDNAAPVVVDFSSPNIAKE 135


>gi|194476818|ref|YP_002048997.1| arginyl-tRNA synthetase [Paulinella chromatophora]
 gi|171191825|gb|ACB42787.1| arginyl-tRNA synthetase [Paulinella chromatophora]
          Length = 602

 Score =  278 bits (712), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/381 (41%), Positives = 227/381 (59%), Gaps = 40/381 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELG----------DKTASVASTNEKYVHKFGDFQCNDAMA 254
           + +   L+++   A++  FPE            D    +AS  E     FGDFQ N  +A
Sbjct: 2   LGIAQELNNLLLTAMENMFPEAVILATDSGKPLDPQLIIASKPE-----FGDFQVNGPLA 56

Query: 255 LCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAG 314
           L KI      K         IA+ + + L   PS +++     +A PGF+N+ L      
Sbjct: 57  LSKILGKPPRK---------IATDLVNALLAIPSFSELCSPPIIAGPGFINLVLKPELLK 107

Query: 315 EQIKDIIVN-GVQPPTLNKK----LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEY 369
            +I+ ++ N  +  P + +       V++DFSSPNIAK+MHVGHLRST+IGD ++R+LE+
Sbjct: 108 SEIRKVLSNPNIGVPNVTETEDHLFPVIIDFSSPNIAKDMHVGHLRSTLIGDCLARILEF 167

Query: 370 LGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEI 427
            G++V+RLNHVGDWGTQFGMLI HL+   P  L     I   DL AFY+++K RFD D+ 
Sbjct: 168 RGYNVLRLNHVGDWGTQFGMLITHLKQVAPQALINPDVIELGDLVAFYRQAKNRFDNDQS 227

Query: 428 FKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQL 487
           F+  + + VV LQ  DPD +KAW+++CD SRR+FQ IYDRL++T+TERGESFY  ++E++
Sbjct: 228 FQIASREEVVRLQSGDPDSRKAWQLLCDQSRREFQVIYDRLDITITERGESFYNSYLEEV 287

Query: 488 VPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQR---- 538
           +  L+   LL  D+G + ++     G+    +P+ I KSDGGF Y T+DLAAIR R    
Sbjct: 288 ILDLDALDLLVTDEGARCVFLEGVMGKSNKPLPVIIQKSDGGFNYATTDLAAIRYRFGVI 347

Query: 539 IEEEKADWIVYVTDLGQGVHF 559
            E + A  IVYVTD GQ  HF
Sbjct: 348 FEGDGASRIVYVTDSGQANHF 368



 Score =  259 bits (661), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 146/351 (41%), Positives = 207/351 (58%), Gaps = 60/351 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           ST+IGD ++R+LE+ G++V+RLNHVGDWGTQFGMLI HL+   P  L     I   DL A
Sbjct: 154 STLIGDCLARILEFRGYNVLRLNHVGDWGTQFGMLITHLKQVAPQALINPDVIELGDLVA 213

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K RFD D+ F+  + + VV LQ  DPD +KAW+++CD SRR+FQ IYDRL++T+T
Sbjct: 214 FYRQAKNRFDNDQSFQIASREEVVRLQSGDPDSRKAWQLLCDQSRREFQVIYDRLDITIT 273

Query: 683 ERGESFYQKHMEQLV-------------------------------PYLEKKGN------ 705
           ERGESFY  ++E+++                               P + +K +      
Sbjct: 274 ERGESFYNSYLEEVILDLDALDLLVTDEGARCVFLEGVMGKSNKPLPVIIQKSDGGFNYA 333

Query: 706 ----LSLTKKLGI----------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                ++  + G+          VYVTD GQ  HF  + + A++AG + P   R++ V F
Sbjct: 334 TTDLAAIRYRFGVIFEGDGASRIVYVTDSGQANHFAGIFQIARRAGWV-PTNGRLEHVPF 392

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS-LD---KLKDKNRHTELTPTELSEAQQA 807
           G+V G+D KK KTR+GDTV+L +LLDE + R+ +D   +L ++NR  E     + +  + 
Sbjct: 393 GLVQGQDGKKLKTRAGDTVRLKDLLDEAIERADIDLRKRLAEENRSEE--EIFIKDVSKK 450

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           V    +KYADLS NR   Y F+FD+ML   GNTA YLLYA  RIA I R +
Sbjct: 451 VGIAAVKYADLSQNRITSYQFNFDRMLSLNGNTAPYLLYAMVRIAGILRKS 501



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 14/185 (7%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +L ++NR  E     + +  + V    +KYADLS NR   Y F+FD+ML   GNTA YLL
Sbjct: 431  RLAEENRSEE--EIFIKDVSKKVGIAAVKYADLSQNRITSYQFNFDRMLSLNGNTAPYLL 488

Query: 996  YAYTRIASIARTAGINSEDLRVAAQ-STPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCL 1054
            YA  RIA I R +    + L      S P+      E+AL + +LR + +++ V  +L  
Sbjct: 489  YAMVRIAGILRKSSKQHDTLEKQLHFSEPI------EWALVRHILRFDLIIIEVEEELLP 542

Query: 1055 HHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIR 1114
              LC YL+++S  F+ FYD    + K  E  + +    RL+L + TA  +K   ++L I 
Sbjct: 543  SRLCSYLFELSQLFNRFYDQVPVL-KAKEPNLSS----RLILCQLTADTLKMGLNLLGIP 597

Query: 1115 TVHKM 1119
            T+ +M
Sbjct: 598  TLERM 602



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 29/158 (18%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELG----------DKTASVASTNEKYVHKFGDFQCNDAMA 58
           + +   L+++   A++  FPE            D    +AS  E     FGDFQ N  +A
Sbjct: 2   LGIAQELNNLLLTAMENMFPEAVILATDSGKPLDPQLIIASKPE-----FGDFQVNGPLA 56

Query: 59  LCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAG 118
           L KI      K         IA+ + + L   PS +++      A PGF+N+ L      
Sbjct: 57  LSKILGKPPRK---------IATDLVNALLAIPSFSELCSPPIIAGPGFINLVLKPELLK 107

Query: 119 EQMKDIIVN-GVQPPTLNKK----LRVLVDFSSPNIAR 151
            +++ ++ N  +  P + +       V++DFSSPNIA+
Sbjct: 108 SEIRKVLSNPNIGVPNVTETEDHLFPVIIDFSSPNIAK 145


>gi|156084636|ref|XP_001609801.1| arginyl-tRNA synthetase [Babesia bovis T2Bo]
 gi|154797053|gb|EDO06233.1| arginyl-tRNA synthetase, putative [Babesia bovis]
          Length = 581

 Score =  278 bits (711), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 152/377 (40%), Positives = 229/377 (60%), Gaps = 26/377 (6%)

Query: 232 SVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAK 291
           SV S N K    FGDFQ NDA++L K      +  +P ++A+ + S ++S          
Sbjct: 33  SVVSANPK----FGDFQWNDAISLYKAIGSTLQVGSPKELAELVKSHISSS--------- 79

Query: 292 VIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
               + V+  GF+ V LS+ +   +I+ +  +GV  P   K  RV VDFSSPNIAKEMHV
Sbjct: 80  TFSAVNVSPQGFLTVTLSKEFIEGEIRHLYKHGVSVPQAPKGFRVAVDFSSPNIAKEMHV 139

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 411
           GHLRSTIIG+++SR+LE+ G+DV+R+NH+GDWGT FGML+ ++  K PD++T  P I+D 
Sbjct: 140 GHLRSTIIGESLSRILEFHGYDVLRINHLGDWGTHFGMLVEYMLAKHPDFMTNVPSISDF 199

Query: 412 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT 471
             FYKE+K   D D  FK R+ + VV LQ  D      W+++C +S R+F KIY  L++T
Sbjct: 200 TQFYKEAKALMDADAEFKARSRKRVVLLQSGDELSINVWKLLCQISEREFAKIYKMLDIT 259

Query: 472 LTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSD 531
           +   GESFY   +  +V  L++K L+   +G + ++     S+P+  +KSDG + YD++D
Sbjct: 260 IENCGESFYNDMIPDVVNELKEKDLVVESEGAQCVF-TSVSSVPLMAIKSDGSYGYDSTD 318

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHF-RLLEESTIIGDTISRLLEYLGHDVVRLNHVG 590
           LA IR RI+   + W++YVTD+GQ  HF ++ E + + G +     +  G D +R++H+G
Sbjct: 319 LACIRYRIKTLGSKWLIYVTDVGQQEHFMKVFETARLAGWS-----KVDGQD-IRIDHLG 372

Query: 591 DWGTQFGMLIAHLQDKF 607
                FGM+     +KF
Sbjct: 373 -----FGMVQDSSGNKF 384



 Score =  242 bits (618), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 144/365 (39%), Positives = 200/365 (54%), Gaps = 54/365 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++SR+LE+ G+DV+R+NH+GDWGT FGML+ ++  K PD++T  P I+D   FY
Sbjct: 144 STIIGESLSRILEFHGYDVLRINHLGDWGTHFGMLVEYMLAKHPDFMTNVPSISDFTQFY 203

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KE+K   D D  FK R+ + VV LQ  D      W+++C +S R+F KIY  L++T+   
Sbjct: 204 KEAKALMDADAEFKARSRKRVVLLQSGDELSINVWKLLCQISEREFAKIYKMLDITIENC 263

Query: 685 GESFYQKHMEQL-------------------------VPYLEKKGNLSL----------- 708
           GESFY   +  +                         VP +  K + S            
Sbjct: 264 GESFYNDMIPDVVNELKEKDLVVESEGAQCVFTSVSSVPLMAIKSDGSYGYDSTDLACIR 323

Query: 709 --TKKLG---IVYVTDLGQGVHFRLLEECAKKAGI--LNPNKTRMDFVGFGVVLGEDRKK 761
              K LG   ++YVTD+GQ  HF  + E A+ AG   ++    R+D +GFG+V      K
Sbjct: 324 YRIKTLGSKWLIYVTDVGQQEHFMKVFETARLAGWSKVDGQDIRIDHLGFGMVQDSSGNK 383

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNR-HTELTPTELS----EAQQAVAYGCIKYA 816
           FKTRSGDTVKL  LLDE + R+  +L+ + +   E   TE+     E  + + YG +KY 
Sbjct: 384 FKTRSGDTVKLITLLDEAVSRATVELESRIKARQEEGETEIDINVPEVAKVLGYGAVKYF 443

Query: 817 DLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSEVE 876
           +L  N   +Y FSFD MLD RGNTA+YLLYAY RI  I   AGI      +P+  Q E+ 
Sbjct: 444 ELRQNIANNYKFSFDHMLDPRGNTAIYLLYAYARICQIFHKAGI------DPETLQPELL 497

Query: 877 DRCCP 881
           D   P
Sbjct: 498 DLVHP 502



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 85/153 (55%), Gaps = 11/153 (7%)

Query: 953  EAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 1012
            E  + + YG +KY +L  N   +Y FSFD MLD RGNTA+YLLYAY RI  I   AGI+ 
Sbjct: 430  EVAKVLGYGAVKYFELRQNIANNYKFSFDHMLDPRGNTAIYLLYAYARICQIFHKAGIDP 489

Query: 1013 EDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFY 1072
            E L    Q   + L H  E +LAK +L++  VL  +T D  +  L +++Y +S  FS FY
Sbjct: 490  ETL----QPELLDLVHPLEISLAKHILKLPAVLHQITADFLISKLADFVYALSVEFSSFY 545

Query: 1073 DNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
              C  I    E   KT    RLLL  AT  VMK
Sbjct: 546  KQCKVIGDPNE---KT----RLLLCHATKTVMK 571



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 13/117 (11%)

Query: 36  SVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAK 95
           SV S N K    FGDFQ NDA++L K      +  +P ++A+ + S ++S          
Sbjct: 33  SVVSANPK----FGDFQWNDAISLYKAIGSTLQVGSPKELAELVKSHISSS--------- 79

Query: 96  VIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
               +  +  GF+ V LS+ +   +++ +  +GV  P   K  RV VDFSSPNIA++
Sbjct: 80  TFSAVNVSPQGFLTVTLSKEFIEGEIRHLYKHGVSVPQAPKGFRVAVDFSSPNIAKE 136


>gi|282897066|ref|ZP_06305068.1| Arginyl-tRNA synthetase, class Ic [Raphidiopsis brookii D9]
 gi|281197718|gb|EFA72612.1| Arginyl-tRNA synthetase, class Ic [Raphidiopsis brookii D9]
          Length = 585

 Score =  278 bits (711), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/337 (46%), Positives = 217/337 (64%), Gaps = 29/337 (8%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N K    FGDFQ N A++L K        K   D  +SIA+ +  EL     ++ +
Sbjct: 32  VAASNPK----FGDFQANVALSLSK--------KLGMD-PRSIAAAIVEEL----DVSDL 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEM 349
            +  E+A PGF+N+ L   Y   Q+  I  +   GV  P +++  + +VDFSSPNIAKEM
Sbjct: 75  CEVPEIAGPGFINLKLQISYLESQLNAIKTDPRLGV--PRVDQPQKQIVDFSSPNIAKEM 132

Query: 350 HVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--P 407
           HVGHLRSTIIGD I+R+LE+ GH V+RLNHVGDWGTQFGMLIA+L++ +P  LT +    
Sbjct: 133 HVGHLRSTIIGDCIARILEFRGHQVLRLNHVGDWGTQFGMLIAYLREVYPQALTTANVLN 192

Query: 408 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 467
           I DL +FY+++K+RFD D  F++ A Q VV LQ    D   AW ++C  SR++FQ IYD 
Sbjct: 193 IGDLVSFYRQAKQRFDADPTFQEIARQEVVRLQAGAEDTTHAWNLLCAQSRKEFQTIYDL 252

Query: 468 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSD 522
           L++ + ERGESFY   + ++V  LEK GL+E + G K ++ E     +  ++P+ + KSD
Sbjct: 253 LDIKIVERGESFYNPFLSKIVEDLEKAGLVEENQGAKCVFLEGFTNREGEALPLIVQKSD 312

Query: 523 GGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           GG+ Y T+DLAA+  RI E+ A  I+YVTD GQ  HF
Sbjct: 313 GGYNYATTDLAALLYRIREDHAKRIIYVTDAGQANHF 349



 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 150/351 (42%), Positives = 202/351 (57%), Gaps = 52/351 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD I+R+LE+ GH V+RLNHVGDWGTQFGMLIA+L++ +P  LT +    I DL +
Sbjct: 139 STIIGDCIARILEFRGHQVLRLNHVGDWGTQFGMLIAYLREVYPQALTTANVLNIGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD D  F++ A Q VV LQ    D   AW ++C  SR++FQ IYD L++ + 
Sbjct: 199 FYRQAKQRFDADPTFQEIARQEVVRLQAGAEDTTHAWNLLCAQSRKEFQTIYDLLDIKIV 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + ++V  LEK G +              T + G                 
Sbjct: 259 ERGESFYNPFLSKIVEDLEKAGLVEENQGAKCVFLEGFTNREGEALPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF    + A+KAG + P+   +  + FG+VL
Sbjct: 319 TTDLAALLYRIREDHAKRIIYVTDAGQANHFAQFFQVAQKAGWI-PDDVELVHIPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT--ELTPTELSEAQQAVAYGCI 813
           GED KKFKTRSGDTV+L +LLDE + R+   L+ + +    + TP  +    Q V    +
Sbjct: 378 GEDGKKFKTRSGDTVRLKDLLDEAVFRARTDLEARLQQEGRQETPEFIHNVAQTVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADLS NR   YVFS+DKML  +GNTA Y+LYAY R   I+R   I+ E+
Sbjct: 438 KYADLSQNRTSSYVFSYDKMLSLKGNTAPYMLYAYVRTQGISREGKIDFEN 488



 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 106/184 (57%), Gaps = 10/184 (5%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +L+ + R    TP  +    Q V    +KYADLS NR   YVFS+DKML  +GNTA Y+L
Sbjct: 412  RLQQEGRQE--TPEFIHNVAQTVGISAVKYADLSQNRTSSYVFSYDKMLSLKGNTAPYML 469

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YAY R   I+R   I+ E+L   A    + L+ E E ALAK LL+++D+L  V +DL  +
Sbjct: 470  YAYVRTQGISREGKIDFENL---APDAKIILQEETELALAKHLLQLDDILYQVEQDLLPN 526

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1115
             LCEYLY +S  F++FYD C  ++ +       + T RL+L   TA+ +     +L I+ 
Sbjct: 527  RLCEYLYSLSEKFNKFYDRCPVLKTE-----DPIRTSRLMLCYVTARTLGLGLGLLGIKV 581

Query: 1116 VHKM 1119
            + ++
Sbjct: 582  IERI 585



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 22/119 (18%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N K    FGDFQ N A++L K        K   D  +SIA+ +  EL     ++ +
Sbjct: 32  VAASNPK----FGDFQANVALSLSK--------KLGMD-PRSIAAAIVEEL----DVSDL 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
            +  E A PGF+N+ L   Y   Q+  I  +   GV  P +++  + +VDFSSPNIA++
Sbjct: 75  CEVPEIAGPGFINLKLQISYLESQLNAIKTDPRLGV--PRVDQPQKQIVDFSSPNIAKE 131


>gi|427704030|ref|YP_007047252.1| arginyl-tRNA synthetase [Cyanobium gracile PCC 6307]
 gi|427347198|gb|AFY29911.1| arginyl-tRNA synthetase [Cyanobium gracile PCC 6307]
          Length = 607

 Score =  278 bits (710), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 161/374 (43%), Positives = 225/374 (60%), Gaps = 41/374 (10%)

Query: 211 LSDVFTHAVQVAFPELG----------DKTASVASTNEKYVHKFGDFQCNDAMALCKIFK 260
           L+ +   A++ AFPE            D   + AS  E     FGDFQ N A+AL K  +
Sbjct: 8   LNSLLLGALERAFPEAAASARQGGQPLDPQLAPASRPE-----FGDFQANGALALAKPLR 62

Query: 261 DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL-SRVYA---GEQ 316
                       ++IA+ + + L  + +   +    E+A PGF+N+ +   V A   G +
Sbjct: 63  QA---------PRAIAAAIVAGLEADSAFLALCLPPEIAGPGFINLTVRPEVLAAELGRR 113

Query: 317 IKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 376
           + D  + GV+P        V+VDFSSPNIAKEMHVGHLRSTIIGD ++R+LE+ GH V+R
Sbjct: 114 LADPRL-GVEP-VAPGGAPVVVDFSSPNIAKEMHVGHLRSTIIGDALARVLEFRGHPVLR 171

Query: 377 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQ 434
           LNHVGDWGTQFGMLI HL+   P+ L  +  +   DL AFY+++K RFD D+ F+  + +
Sbjct: 172 LNHVGDWGTQFGMLITHLKQVAPEALDTADAVDLGDLVAFYRQAKARFDSDDAFQTTSRE 231

Query: 435 CVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKK 494
            VV LQ  DP  ++AW+++CD SRR+FQ++YDRL++ L ERGESFY  ++E +V  L   
Sbjct: 232 EVVKLQSGDPVSRRAWQLLCDQSRREFQRLYDRLDIRLDERGESFYNPYLEGVVTDLAAA 291

Query: 495 GLLELDDGRKIMWGE-DRGSI----PMTIVKSDGGFTYDTSDLAAIRQRI----EEEKAD 545
           GLL  D G + ++ E D G+     P+ + KSDGGF Y T+DLAAIR R     + + A 
Sbjct: 292 GLLVSDGGAQCVFLEADDGTASQAPPVIVRKSDGGFNYATTDLAAIRYRFAAPPDGDGAR 351

Query: 546 WIVYVTDLGQGVHF 559
            ++YVTD GQ  HF
Sbjct: 352 RVIYVTDAGQASHF 365



 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/347 (42%), Positives = 195/347 (56%), Gaps = 56/347 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD ++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL A
Sbjct: 151 STIIGDALARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALDTADAVDLGDLVA 210

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K RFD D+ F+  + + VV LQ  DP  ++AW+++CD SRR+FQ++YDRL++ L 
Sbjct: 211 FYRQAKARFDSDDAFQTTSREEVVKLQSGDPVSRRAWQLLCDQSRREFQRLYDRLDIRLD 270

Query: 683 ERGESFYQKHMEQLVPYLEKKG-----------------------------------NLS 707
           ERGESFY  ++E +V  L   G                                   N +
Sbjct: 271 ERGESFYNPYLEGVVTDLAAAGLLVSDGGAQCVFLEADDGTASQAPPVIVRKSDGGFNYA 330

Query: 708 LTKKLGI----------------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
            T    I                +YVTD GQ  HF  + + A++AG + P   R++ V F
Sbjct: 331 TTDLAAIRYRFAAPPDGDGARRVIYVTDAGQASHFAGVFQVARRAGWI-PEGGRLEHVPF 389

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L ELLDE + R    L+ +         E   SE    V 
Sbjct: 390 GLVQGEDGKKLKTRAGDTVRLKELLDEAVERCDADLRRRLEEEGRQEEEAFTSEVATTVG 449

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
              +KYADLS NR  +Y FSFD+ML   GNTA YLLYA  RIA IAR
Sbjct: 450 LAAVKYADLSTNRITNYQFSFDRMLALSGNTAPYLLYAVVRIAGIAR 496



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 952  SEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR-TAGI 1010
            SE    V    +KYADLS NR  +Y FSFD+ML   GNTA YLLYA  RIA IAR   G 
Sbjct: 442  SEVATTVGLAAVKYADLSTNRITNYQFSFDRMLALSGNTAPYLLYAVVRIAGIARKGGGD 501

Query: 1011 NSEDLRVAAQSTPVSLE--HEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAF 1068
              +    +    P SL     +E+AL + LL+ + V+  V  +L  + LC YL+++   F
Sbjct: 502  GEDAAGTSGPEAPASLAFTEPQEWALVRQLLQFDAVIQEVEEELLPNRLCSYLFELCQLF 561

Query: 1069 SEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            + FYD    +  +     +   T RL L   +A  +K+   +L I T+ +M
Sbjct: 562  NRFYDQVPVLRAE-----EPARTSRLALCRLSADTLKQGLGLLGIPTLERM 607



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 30/152 (19%)

Query: 15  LSDVFTHAVQVAFPELG----------DKTASVASTNEKYVHKFGDFQCNDAMALCKIFK 64
           L+ +   A++ AFPE            D   + AS  E     FGDFQ N A+AL K  +
Sbjct: 8   LNSLLLGALERAFPEAAASARQGGQPLDPQLAPASRPE-----FGDFQANGALALAKPLR 62

Query: 65  DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-SRVYA---GEQ 120
                       ++IA+ + + L  + +   +    E A PGF+N+ +   V A   G +
Sbjct: 63  QA---------PRAIAAAIVAGLEADSAFLALCLPPEIAGPGFINLTVRPEVLAAELGRR 113

Query: 121 MKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           + D  + GV+ P       V+VDFSSPNIA++
Sbjct: 114 LADPRL-GVE-PVAPGGAPVVVDFSSPNIAKE 143


>gi|124024435|ref|YP_001018742.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|166232822|sp|A2CDB7.1|SYR_PROM3 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|123964721|gb|ABM79477.1| Arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
          Length = 603

 Score =  278 bits (710), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/383 (40%), Positives = 220/383 (57%), Gaps = 42/383 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVH-----KFGDFQCNDAMALCKIF 259
           +S+   L      A+  AFPE         +  +  +      +FGDFQ N A+ L K  
Sbjct: 2   LSLAHALESQLRAAIDRAFPEAAASARESGTGLDPQLAPASKPEFGDFQANAALPLAKPL 61

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
           K            + IA+ +  +L  + +   +    ++A PGF+N+ +       +++ 
Sbjct: 62  KQP---------PRQIAAAIVDQLMVDTAFNAICLTPDIAGPGFINLTVRPECLAAEVQA 112

Query: 320 IIV------------NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLL 367
            +             N  Q PT      V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+L
Sbjct: 113 RLADARLGVPLVEGDNDGQQPT-----PVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVL 167

Query: 368 EYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDED 425
           E+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL  FY+++K+RFD+D
Sbjct: 168 EFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALETADAVDLGDLVVFYRQAKQRFDDD 227

Query: 426 EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHME 485
           E F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL+V L ERGESFY  ++E
Sbjct: 228 EAFQTTSREEVVKLQGGDPLSLKAWSLLCDQSRREFQKIYDRLDVRLNERGESFYNAYLE 287

Query: 486 QLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI- 539
            +V  L   GLL  DDG + ++     G+D   +P+ + KSDGGF Y T+DLAA+R R  
Sbjct: 288 SVVEDLNVSGLLVSDDGAQCVFLEGVTGKDGKPLPVIVQKSDGGFNYATTDLAAMRYRFA 347

Query: 540 ---EEEKADWIVYVTDLGQGVHF 559
              + + A  ++YVTD GQ  HF
Sbjct: 348 APPQGDGARRVIYVTDAGQANHF 370



 Score =  267 bits (683), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 152/350 (43%), Positives = 201/350 (57%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL  
Sbjct: 156 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALETADAVDLGDLVV 215

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD+DE F+  + + VV LQ  DP   KAW ++CD SRR+FQKIYDRL+V L 
Sbjct: 216 FYRQAKQRFDDDEAFQTTSREEVVKLQGGDPLSLKAWSLLCDQSRREFQKIYDRLDVRLN 275

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY  ++E +V  L   G L             +T K G                 
Sbjct: 276 ERGESFYNAYLESVVEDLNVSGLLVSDDGAQCVFLEGVTGKDGKPLPVIVQKSDGGFNYA 335

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 ++YVTD GQ  HF  + + A++AG + P+  R+  V F
Sbjct: 336 TTDLAAMRYRFAAPPQGDGARRVIYVTDAGQANHFAGVFQVAQRAGWI-PDAGRLQHVPF 394

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L ELLDE + R+   L+ + +       E  + +    V 
Sbjct: 395 GLVQGEDGKKLKTRAGDTVRLRELLDEAVERAESDLRRRLQEEGRDEDESFIEQVATTVG 454

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 455 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 504



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 11/162 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V    +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G    DL V
Sbjct: 453  VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLDV 508

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
               +  +     +E+AL + LL+ + V+  V  +L  + LC YL+++S  F+ FYD    
Sbjct: 509  T--TAELQFSETQEWALVRELLKFDAVIAEVEEELLPNRLCTYLFELSQVFNRFYDQVPV 566

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ +   +     + RL L   TA  +K    +L I T+ +M
Sbjct: 567  LKAEQPSR-----SCRLALCRLTADTLKLGLSLLGIPTLERM 603



 Score = 43.5 bits (101), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 33/162 (20%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVH-----KFGDFQCNDAMALCKIF 63
           +S+   L      A+  AFPE         +  +  +      +FGDFQ N A+ L K  
Sbjct: 2   LSLAHALESQLRAAIDRAFPEAAASARESGTGLDPQLAPASKPEFGDFQANAALPLAKPL 61

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVF------------ 111
           K            + IA+ +  +L  + +   +    + A PGF+N+             
Sbjct: 62  KQP---------PRQIAAAIVDQLMVDTAFNAICLTPDIAGPGFINLTVRPECLAAEVQA 112

Query: 112 -LSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            L+    G  + +   +G QP        V+VDFSSPNIA++
Sbjct: 113 RLADARLGVPLVEGDNDGQQPTP------VVVDFSSPNIAKE 148


>gi|323454276|gb|EGB10146.1| hypothetical protein AURANDRAFT_22930 [Aureococcus anophagefferens]
          Length = 644

 Score =  277 bits (708), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 179/410 (43%), Positives = 230/410 (56%), Gaps = 35/410 (8%)

Query: 230 TASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSL 289
           T   A+ N     +FGDFQCN A+AL K     G  + P D+A  I       L  +  +
Sbjct: 69  TERYAALNVATKKEFGDFQCNAALALSKKL---GAPRPPRDVAADI----VRALEADAGV 121

Query: 290 AKVID-KIEVAKPGFVNVFLSRVYAGEQIKDIIVN-----GVQPPTLNKKLRVLVDFSSP 343
           A V+   +E+A PGFVN+ LS  Y       +  +     GV  P       V+VD+SSP
Sbjct: 122 ASVVSFPLEIAGPGFVNLRLSDDYLARTAAAMAADADGRCGV--PRAAAPRTVVVDYSSP 179

Query: 344 NIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFP-DYL 402
           NIAKEMHVGHLRST+IGD ++  LE+ GHDV R+NHVGDWGTQFGML+AHL D  P    
Sbjct: 180 NIAKEMHVGHLRSTVIGDALANCLEFAGHDVRRVNHVGDWGTQFGMLLAHLDDVAPVGGE 239

Query: 403 TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQ 462
             +P + DL AFYKE+K RFD DE FK RA   VVALQ  D     AW  +C  SR +F 
Sbjct: 240 NDAPELGDLVAFYKEAKARFDADESFKLRARDNVVALQGGDARSLAAWRRLCAASRVEFD 299

Query: 463 KIYDRLNVT-LTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW----GEDRGSIPMT 517
            IYDRL V  L E GESFY   +E  V  L    L E  +G  ++W     E RG+ PM 
Sbjct: 300 AIYDRLGVAGLEEVGESFYNDRLEATVAALGD--LAEPSEGATVVWPPGDPETRGN-PMI 356

Query: 518 IVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEEST-----IIGDTI 572
           + KSDGGF Y T+DLAA   R  + KAD ++YVTD GQG HF  + E+      + GD  
Sbjct: 357 VRKSDGGFLYATTDLAAAAYRCGDLKADRVLYVTDAGQGPHFAAVFEAAKRAALVAGDA- 415

Query: 573 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 622
             LLE++   +VR      + T+ G  +  L+D   +   ++  +ADL+A
Sbjct: 416 --LLEHVPFGLVRGEDGKKFATRSGETV-RLKDLLDEAERRA--LADLRA 460



 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/349 (43%), Positives = 192/349 (55%), Gaps = 56/349 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFP-DYLTKSPPIADLQAF 623
           ST+IGD ++  LE+ GHDV R+NHVGDWGTQFGML+AHL D  P      +P + DL AF
Sbjct: 192 STVIGDALANCLEFAGHDVRRVNHVGDWGTQFGMLLAHLDDVAPVGGENDAPELGDLVAF 251

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LT 682
           YKE+K RFD DE FK RA   VVALQ  D     AW  +C  SR +F  IYDRL V  L 
Sbjct: 252 YKEAKARFDADESFKLRARDNVVALQGGDARSLAAWRRLCAASRVEFDAIYDRLGVAGLE 311

Query: 683 ERGESFYQKHMEQLVPYL-------------------EKKGNLSLTKKLG---------- 713
           E GESFY   +E  V  L                   E +GN  + +K            
Sbjct: 312 EVGESFYNDRLEATVAALGDLAEPSEGATVVWPPGDPETRGNPMIVRKSDGGFLYATTDL 371

Query: 714 --------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR 759
                         ++YVTD GQG HF  + E AK+A ++  +   ++ V FG+V GED 
Sbjct: 372 AAAAYRCGDLKADRVLYVTDAGQGPHFAAVFEAAKRAALVAGDAL-LEHVPFGLVRGEDG 430

Query: 760 KKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTE--------LTPTELSEAQQAVA 809
           KKF TRSG+TV+L +LLDE  RR+L  L+ +  +R+ E            EL+   +AV 
Sbjct: 431 KKFATRSGETVRLKDLLDEAERRALADLRARRDDRNAEDSSDASLDFDDAELAALARAVG 490

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
            G +KYADLS NR  +Y FS+ KML   GNTA Y+LY+Y RI  I R A
Sbjct: 491 IGAVKYADLSLNRESNYKFSYGKMLALTGNTAPYMLYSYARINGIRRRA 539



 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 91/172 (52%), Gaps = 8/172 (4%)

Query: 949  TELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 1008
             EL+   +AV  G +KYADLS NR  +Y FS+ KML   GNTA Y+LY+Y RI  I R A
Sbjct: 480  AELAALARAVGIGAVKYADLSLNRESNYKFSYGKMLALTGNTAPYMLYSYARINGIRRRA 539

Query: 1009 GINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAF 1068
               +E    AA    V  + + E ALA+ L  +   L+ + RDL  + LC+YL++++  F
Sbjct: 540  ---AERGDAAAGDAAVVFDDDAERALARHLALLAPTLVNLERDLRPNALCDYLFELAQIF 596

Query: 1069 SEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD-ILNIRTVHKM 1119
            + FY++C       +     +   R  L  ATA  +K     IL I  V +M
Sbjct: 597  NRFYESCPVT----QAPTPELAASRAKLCAATAGALKLGLSTILGIPVVDRM 644



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 15/125 (12%)

Query: 34  TASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSL 93
           T   A+ N     +FGDFQCN A+AL K     G  + P D+A  I       L  +  +
Sbjct: 69  TERYAALNVATKKEFGDFQCNAALALSKKL---GAPRPPRDVAADI----VRALEADAGV 121

Query: 94  AKVID-KIEAAKPGFVNVFLSRVYAGEQMKDIIVN-----GVQPPTLNKKLRVLVDFSSP 147
           A V+   +E A PGFVN+ LS  Y       +  +     GV  P       V+VD+SSP
Sbjct: 122 ASVVSFPLEIAGPGFVNLRLSDDYLARTAAAMAADADGRCGV--PRAAAPRTVVVDYSSP 179

Query: 148 NIARK 152
           NIA++
Sbjct: 180 NIAKE 184


>gi|219119306|ref|XP_002180416.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407889|gb|EEC47824.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 573

 Score =  276 bits (707), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/342 (43%), Positives = 205/342 (59%), Gaps = 30/342 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM L K         +P + A  I        A  P +   +++ E+A PG
Sbjct: 9   EFGDYQVNAAMGLAKALN-----LSPRECAAQIVK------ALQPKIQSFMEEPEIAGPG 57

Query: 303 FVNVFLSRVYAGEQIKDIIVNG---VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           FVN+     Y  + +  +  +    +  P   +  +++VDFSSPNIAKEMHVGHLRSTII
Sbjct: 58  FVNLRFRTSYLTQAVSSMAGDAQGRLAVPRTAQTQKIVVDFSSPNIAKEMHVGHLRSTII 117

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP----IADLQAFY 415
           GDT+  +LE+ GH+V RLNHVGDWGTQFGML+ HL+D++P  L         + DL   Y
Sbjct: 118 GDTLCNVLEFAGHEVTRLNHVGDWGTQFGMLVEHLRDEYPAALRSDTADDVDLGDLVQLY 177

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTE 474
           K +KKRFDED+ FK RA + VV LQ  + +   AWE +C  SR+++QKIYDRL +  L E
Sbjct: 178 KAAKKRFDEDDEFKTRAREGVVKLQAGNEEELAAWESLCAASRKEYQKIYDRLQIEGLVE 237

Query: 475 RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDT 529
           RGESFY   ++ +V  L +KGL    DG  +++ E     D   +PM + KSDGGF Y T
Sbjct: 238 RGESFYNPFLKDVVDELVEKGLAVESDGALVVYLEGYTNRDGSPLPMIVRKSDGGFNYAT 297

Query: 530 SDLAAIRQRI------EEEKADWIVYVTDLGQGVHFRLLEES 565
           +DLAA+R R         E+AD ++YVTD GQ  HF ++ E+
Sbjct: 298 TDLAAMRHRTLMPRAESGERADRVLYVTDAGQAQHFEMVFEA 339



 Score =  245 bits (626), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 144/353 (40%), Positives = 191/353 (54%), Gaps = 60/353 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP----IADL 620
           STIIGDT+  +LE+ GH+V RLNHVGDWGTQFGML+ HL+D++P  L         + DL
Sbjct: 114 STIIGDTLCNVLEFAGHEVTRLNHVGDWGTQFGMLVEHLRDEYPAALRSDTADDVDLGDL 173

Query: 621 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT 680
              YK +KKRFDED+ FK RA + VV LQ  + +   AWE +C  SR+++QKIYDRL + 
Sbjct: 174 VQLYKAAKKRFDEDDEFKTRAREGVVKLQAGNEEELAAWESLCAASRKEYQKIYDRLQIE 233

Query: 681 -LTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV---------------------- 717
            L ERGESFY   ++ +V  L +KG    +    +VY+                      
Sbjct: 234 GLVERGESFYNPFLKDVVDELVEKGLAVESDGALVVYLEGYTNRDGSPLPMIVRKSDGGF 293

Query: 718 -------------------------------TDLGQGVHFRLLEECAKKAGILNPNKTRM 746
                                          TD GQ  HF ++ E  K AG      + +
Sbjct: 294 NYATTDLAAMRHRTLMPRAESGERADRVLYVTDAGQAQHFEMVFEAGKVAGFCREGAS-L 352

Query: 747 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE-LSEAQ 805
           + V FG+V GED KKF TRSG+TVKL +LLDE +R S   LK +N + +    + +    
Sbjct: 353 EHVPFGLVQGEDGKKFATRSGETVKLKDLLDEAVRISGADLKKRNENVDQEFLDRVDNVA 412

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           + V  G +KYADLS NR  +Y FS+D+ML   GNTA Y+LYAY R+  I R A
Sbjct: 413 RIVGIGAVKYADLSMNRESNYRFSYDRMLSLNGNTAPYMLYAYARVCGIIRKA 465



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 11/166 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA----GINSE 1013
            V  G +KYADLS NR  +Y FS+D+ML   GNTA Y+LYAY R+  I R A    G  + 
Sbjct: 415  VGIGAVKYADLSMNRESNYRFSYDRMLSLNGNTAPYMLYAYARVCGIIRKASGQEGTGAI 474

Query: 1014 DLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYD 1073
            D   A++   + + HE E  L + L+++ DVL  V R+L  + +C+YL++ S  F++FY+
Sbjct: 475  DWPKASE---IMITHESELELIRNLVKLPDVLNEVERELYPNRMCDYLFETSQKFNQFYE 531

Query: 1074 NCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            +C   + ++E     +   RL L  ATA  ++    +L I T+ KM
Sbjct: 532  SCSVNKAESE----EIKASRLSLCTATAGTIRLLLTLLGIETLEKM 573



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 16/121 (13%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM L K         +P + A  I        A  P +   +++ E A PG
Sbjct: 9   EFGDYQVNAAMGLAKALN-----LSPRECAAQIVK------ALQPKIQSFMEEPEIAGPG 57

Query: 107 FVNVFLSRVYAGEQMKDIIVNG---VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           FVN+     Y  + +  +  +    +  P   +  +++VDFSSPNIA++      HL S 
Sbjct: 58  FVNLRFRTSYLTQAVSSMAGDAQGRLAVPRTAQTQKIVVDFSSPNIAKE--MHVGHLRST 115

Query: 164 I 164
           I
Sbjct: 116 I 116


>gi|303274520|ref|XP_003056579.1| arginyl-tRNA synthetase [Micromonas pusilla CCMP1545]
 gi|226462663|gb|EEH59955.1| arginyl-tRNA synthetase [Micromonas pusilla CCMP1545]
          Length = 654

 Score =  276 bits (707), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 171/439 (38%), Positives = 252/439 (57%), Gaps = 43/439 (9%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           S+R  +  +F+ A  V FP        +A  + +     GD+QCN AM +    KD+G+ 
Sbjct: 70  SLRSTMKLMFSQAGNVVFPGESSLDFEIAECSNR---ALGDYQCNSAMKIFAELKDRGDT 126

Query: 266 --KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII-- 321
             KNP  +A++I   +       P+     +K+ VA PGF+N+  SR +  ++   +   
Sbjct: 127 RFKNPRSLAEAIIQAI-------PAENSFFEKLAVAGPGFINITFSREFLAQEALRVFHC 179

Query: 322 -VNGVQPPTLN-KKL---RVLVDFSSPNIAKEM---HVGHLRSTIIGDTISRLLEYLGHD 373
             +G    T   +KL   R +VD+SSPNIAKEM   HVGHLRSTIIG+TI R LE++G +
Sbjct: 180 SADGTFETTRKFRKLTAKRAVVDYSSPNIAKEMQEMHVGHLRSTIIGETICRALEFVGVE 239

Query: 374 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQAFYKESKKRFDEDEIFKKR 431
           V+RLNHVGDWGTQFGML+AHL+D     +++S    + +LQ  YK+SK RFD DE FKKR
Sbjct: 240 VIRLNHVGDWGTQFGMLLAHLED-----ISESSDFEVKNLQELYKQSKIRFDSDEDFKKR 294

Query: 432 AYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYL 491
           A   VV LQ  D   K+ W  IC+VSR+DF++IY  L+V + ERGES+Y   +  ++  L
Sbjct: 295 ARAAVVHLQAGDKHLKEKWTDICEVSRQDFEEIYRLLDVHILERGESYYNYLIPDVLSEL 354

Query: 492 EKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT 551
            +K +    DG   ++ +   S P+   KS+G F Y ++DLAA+ QRI +  ADWI+YVT
Sbjct: 355 IEKEIAVQSDGALCIFADGSDS-PLICRKSNGSFNYASTDLAALWQRISDLCADWIIYVT 413

Query: 552 DLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL 611
           D+GQ  HF  + ++      + R      +  V L+HVG     FG+++     +F    
Sbjct: 414 DVGQKKHFDAIFDAASRAGWLKR-----ENGNVSLDHVG-----FGLVMGVDGKRFR--- 460

Query: 612 TKSPPIADLQAFYKESKKR 630
           T+S     L++  +E++ R
Sbjct: 461 TRSGDTVPLKSLLREAQSR 479



 Score =  251 bits (642), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/347 (42%), Positives = 206/347 (59%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIG+TI R LE++G +V+RLNHVGDWGTQFGML+AHL+D     +++S    + +LQ 
Sbjct: 222 STIIGETICRALEFVGVEVIRLNHVGDWGTQFGMLLAHLED-----ISESSDFEVKNLQE 276

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
            YK+SK RFD DE FKKRA   VV LQ  D   K+ W  IC+VSR+DF++IY  L+V + 
Sbjct: 277 LYKQSKIRFDSDEDFKKRARAAVVHLQAGDKHLKEKWTDICEVSRQDFEEIYRLLDVHIL 336

Query: 683 ERGESFYQKHMEQLV-------------------------PYLEKKGNLS---------- 707
           ERGES+Y   +  ++                         P + +K N S          
Sbjct: 337 ERGESYYNYLIPDVLSELIEKEIAVQSDGALCIFADGSDSPLICRKSNGSFNYASTDLAA 396

Query: 708 LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGIL---NPNKTRMDFVGFGVVLGED 758
           L +++       I+YVTD+GQ  HF  + + A +AG L   N N + +D VGFG+V+G D
Sbjct: 397 LWQRISDLCADWIIYVTDVGQKKHFDAIFDAASRAGWLKRENGNVS-LDHVGFGLVMGVD 455

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADL 818
            K+F+TRSGDTV L  LL E   R LD L  + R + L+  EL +A + +    +KYADL
Sbjct: 456 GKRFRTRSGDTVPLKSLLREAQSRCLDSL--RGRESTLSDDELEDASRIMGVAAVKYADL 513

Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDP 865
            +NR  +Y FS+++MLD +GNTAVYLLY + RI+S+   A     +P
Sbjct: 514 HNNRLTNYTFSYERMLDLKGNTAVYLLYTHARISSLLERAHTQDLEP 560



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 110/188 (58%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R LD L+   R + L+  EL +A + +    +KYADL +NR  +Y FS+++MLD +GNTA
Sbjct: 479  RCLDSLR--GRESTLSDDELEDASRIMGVAAVKYADLHNNRLTNYTFSYERMLDLKGNTA 536

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLY + RI+S+   A  +++DL   + +  V L+ E E  LA T+++  DV+  V +D
Sbjct: 537  VYLLYTHARISSLLERA--HTQDLEPLSINDLV-LKDEFERVLALTIMKFPDVVESVVQD 593

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L    LC+Y Y +   F+EFY +C  +  + E         R  L +ATA  +++CF IL
Sbjct: 594  LLPSRLCDYTYSLCVTFNEFYGSCKVLGGEQE-------RSRTFLCQATAISLRQCFHIL 646

Query: 1112 NIRTVHKM 1119
             I  ++++
Sbjct: 647  GIEPLYRL 654



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 20/174 (11%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+R  +  +F+ A  V FP        +A  + +     GD+QCN AM +    KD+G+ 
Sbjct: 70  SLRSTMKLMFSQAGNVVFPGESSLDFEIAECSNR---ALGDYQCNSAMKIFAELKDRGDT 126

Query: 70  --KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII-- 125
             KNP  +A++I   +       P+     +K+  A PGF+N+  SR +  ++   +   
Sbjct: 127 RFKNPRSLAEAIIQAI-------PAENSFFEKLAVAGPGFINITFSREFLAQEALRVFHC 179

Query: 126 -VNGVQPPTLN-KKL---RVLVDFSSPNIARKGGFLY-PHLPSQIHDILISKAI 173
             +G    T   +KL   R +VD+SSPNIA++   ++  HL S I    I +A+
Sbjct: 180 SADGTFETTRKFRKLTAKRAVVDYSSPNIAKEMQEMHVGHLRSTIIGETICRAL 233


>gi|254422588|ref|ZP_05036306.1| arginyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196190077|gb|EDX85041.1| arginyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 585

 Score =  276 bits (706), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 147/329 (44%), Positives = 211/329 (64%), Gaps = 27/329 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N AM+L K  +      NP    ++IA+ +T+ L     +  + +   +A PG
Sbjct: 38  KFGDYQANVAMSLAKPLR-----MNP----RAIATKITANL----DVTNICEPPSIAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N  L   Y  +Q+K++  +   GV  P  N   +V+VD+ SPNIAKEMHVGHLR  +I
Sbjct: 85  FINFKLKTEYLEQQLKEMHSSDRLGV--PKANPPQKVIVDYPSPNIAKEMHVGHLRPAVI 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPD--YLTKSPPIADLQAFYKE 417
           G+  +R+LE+LGHDV++++HVGDWGT FGMLIA+LQ+ +PD      +    +L  FY++
Sbjct: 143 GECFARVLEFLGHDVLKVSHVGDWGTPFGMLIAYLQEAYPDPQAAAAASTTGELATFYRQ 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT--LTER 475
           +KKRFD DE FK+ A Q VV LQ  D    +AW+ +C +S+R ++KIYD LN++  + +R
Sbjct: 203 AKKRFDTDEAFKENARQAVVKLQAGDQAVLEAWQRVCQLSKRSYRKIYDLLNISEDIIDR 262

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTS 530
           GESFY  ++  +V  L+K GLL  DDG K ++ E     D   +P+ + KS+GG+ Y T+
Sbjct: 263 GESFYNPYLADVVTDLDKAGLLVEDDGAKCVFLEGFTNKDGEPLPLIVQKSNGGYNYATT 322

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           DLAA+R RI E+K D IVY TD GQ  HF
Sbjct: 323 DLAALRYRITEDKVDRIVYSTDAGQANHF 351



 Score =  242 bits (618), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 133/349 (38%), Positives = 196/349 (56%), Gaps = 54/349 (15%)

Query: 566 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPD--YLTKSPPIADLQAF 623
            +IG+  +R+LE+LGHDV++++HVGDWGT FGMLIA+LQ+ +PD      +    +L  F
Sbjct: 140 AVIGECFARVLEFLGHDVLKVSHVGDWGTPFGMLIAYLQEAYPDPQAAAAASTTGELATF 199

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT--L 681
           Y+++KKRFD DE FK+ A Q VV LQ  D    +AW+ +C +S+R ++KIYD LN++  +
Sbjct: 200 YRQAKKRFDTDEAFKENARQAVVKLQAGDQAVLEAWQRVCQLSKRSYRKIYDLLNISEDI 259

Query: 682 TERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------------- 713
            +RGESFY  ++  +V  L+K G L              T K G                
Sbjct: 260 IDRGESFYNPYLADVVTDLDKAGLLVEDDGAKCVFLEGFTNKDGEPLPLIVQKSNGGYNY 319

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              IVY TD GQ  HF    + A++AG + P    + +  FG+V
Sbjct: 320 ATTDLAALRYRITEDKVDRIVYSTDAGQANHFSQFFQVARRAGWV-PESVELSYAPFGLV 378

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGC 812
            GED K+ K+RSG+ V L ELLDE + R+   ++ + +  E T ++  +    + V  G 
Sbjct: 379 QGEDGKRLKSRSGEVVPLQELLDEAIARTRTDVEGRLQQEERTESDDFIQNVAEKVGIGA 438

Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           +KYADLS NR  +Y FS+D+ML  +GNTA Y++YAY R+  I+R   I+
Sbjct: 439 VKYADLSQNRISNYTFSYDRMLALQGNTAPYMMYAYVRVQGISRKGEID 487



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 120/239 (50%), Gaps = 39/239 (16%)

Query: 910  VWRGVGRGQEEVQDSLRGYGLRRSLDKLKDKNRHTELTPTE--LSEA------------- 954
            V R  G   E V+ S   +GL +  D  + K+R  E+ P +  L EA             
Sbjct: 357  VARRAGWVPESVELSYAPFGLVQGEDGKRLKSRSGEVVPLQELLDEAIARTRTDVEGRLQ 416

Query: 955  --------------QQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
                           + V  G +KYADLS NR  +Y FS+D+ML  +GNTA Y++YAY R
Sbjct: 417  QEERTESDDFIQNVAEKVGIGAVKYADLSQNRISNYTFSYDRMLALQGNTAPYMMYAYVR 476

Query: 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
            +  I+R   I+   L        V L  E E  LAK LL++++VL  V ++L  + LC+Y
Sbjct: 477  VQGISRKGEIDLSTL-----DAQVKLTEESELTLAKHLLQLDEVLAEVEKELLPNRLCQY 531

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            L+++S  F++FYD C  ++ +   +     T RL+L + TA+ +K    +L I  + +M
Sbjct: 532  LFELSQKFNQFYDQCSVLQAEEPQR-----TSRLVLCDLTARTLKLGLSLLGIDVLERM 585



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 20/110 (18%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSI-ASVVTSELATNPSLAKVIDKIEAAKP 105
           KFGD+Q N AM+L K  +      NP  IA  I A++  + +   PS+A          P
Sbjct: 38  KFGDYQANVAMSLAKPLR-----MNPRAIATKITANLDVTNICEPPSIAG---------P 83

Query: 106 GFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           GF+N  L   Y  +Q+K++  +   GV  P  N   +V+VD+ SPNIA++
Sbjct: 84  GFINFKLKTEYLEQQLKEMHSSDRLGV--PKANPPQKVIVDYPSPNIAKE 131


>gi|224008801|ref|XP_002293359.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970759|gb|EED89095.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 553

 Score =  276 bits (705), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 141/334 (42%), Positives = 202/334 (60%), Gaps = 44/334 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ R+L Y+GHDV R+NHVGDWGTQFGMLI +L++++PD+    P I DL  FY
Sbjct: 109 STIIGESVCRILSYVGHDVKRINHVGDWGTQFGMLIQYLKEEYPDFHGDIPNITDLTEFY 168

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K +K RFDE   FKK +   VV LQ  D + +K W+++CDVSR++F+K+YDRL++T+ E 
Sbjct: 169 KNAKMRFDESPEFKKISQLNVVKLQAGDEECRKIWQVLCDVSRKEFEKVYDRLDITVEEC 228

Query: 685 GESFYQKHMEQLVPYLEKKGNLSL------------------------------------ 708
           GESFY   +  ++   + +G +S+                                    
Sbjct: 229 GESFYNDKIAPVIEEFDSRGLVSVEEGGAKCVFVPKYKVPLMLQKSDGGYGYDSTDMAAI 288

Query: 709 ------TKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
                  K   IVY+TD  QG HF+++   AKK G ++ +  R+D +GFG V GED K+F
Sbjct: 289 KYRLDQMKASQIVYITDFTQGDHFQMVFAAAKKIGWVSEDSHRLDHIGFGTVQGEDGKRF 348

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQAVAYGCIKYADLSH 820
           KTRSGDTV+L +LLDE + R    LK++  +    +   E+     A+ YG +KY DL  
Sbjct: 349 KTRSGDTVRLVDLLDEAVSRMETSLKERATDGKAAVDDAEIHATASAMGYGAVKYFDLRR 408

Query: 821 NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           N   +Y+FS+D+MLD +GNTA+YLLYA+ R+ SI
Sbjct: 409 NPTSNYIFSYDRMLDTKGNTAIYLLYAHARLESI 442



 Score =  273 bits (697), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 144/339 (42%), Positives = 218/339 (64%), Gaps = 23/339 (6%)

Query: 267 NPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV- 325
           +P D+A++I   V S+   NP L +    + V  PGF+   + R Y    +  II NG  
Sbjct: 19  SPQDVAKAIIDAVPSD---NPVLCE----MNVNGPGFIMSRIKREYLERGVNHIIKNGAP 71

Query: 326 -QPPTLNKK------LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            +P +  +         V+VDFSSPNIAKEMHVGHLRSTIIG+++ R+L Y+GHDV R+N
Sbjct: 72  TKPKSAGRNDASGGGGVVVVDFSSPNIAKEMHVGHLRSTIIGESVCRILSYVGHDVKRIN 131

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLI +L++++PD+    P I DL  FYK +K RFDE   FKK +   VV 
Sbjct: 132 HVGDWGTQFGMLIQYLKEEYPDFHGDIPNITDLTEFYKNAKMRFDESPEFKKISQLNVVK 191

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ  D + +K W+++CDVSR++F+K+YDRL++T+ E GESFY   +  ++   + +GL+ 
Sbjct: 192 LQAGDEECRKIWQVLCDVSRKEFEKVYDRLDITVEECGESFYNDKIAPVIEEFDSRGLVS 251

Query: 499 LDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           +++G        +  +P+ + KSDGG+ YD++D+AAI+ R+++ KA  IVY+TD  QG H
Sbjct: 252 VEEGGAKCVFVPKYKVPLMLQKSDGGYGYDSTDMAAIKYRLDQMKASQIVYITDFTQGDH 311

Query: 559 FRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
           F+++  +       ++ + ++  D  RL+H+G +GT  G
Sbjct: 312 FQMVFAA-------AKKIGWVSEDSHRLDHIG-FGTVQG 342



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 12/175 (6%)

Query: 949  TELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 1008
             E+     A+ YG +KY DL  N   +Y+FS+D+MLD +GNTA+YLLYA+ R+ SI    
Sbjct: 387  AEIHATASAMGYGAVKYFDLRRNPTSNYIFSYDRMLDTKGNTAIYLLYAHARLESIISKG 446

Query: 1009 ----GINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDI 1064
                G++ ++L + A    + L H+ E  L   L    D +     DL  +H+C+++Y +
Sbjct: 447  KAEFGVDVDEL-IKAGKAKIILAHKSERNLGLHLEFFADAVEETLNDLFPYHICDFVYAL 505

Query: 1065 STAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            S A SEF   C  +              RLLL  ATA  M++CFD+L IR V+++
Sbjct: 506  SNAASEFVTQCKVLGSPE-------MESRLLLCRATAISMRQCFDLLGIRHVYRI 553


>gi|254526915|ref|ZP_05138967.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221538339|gb|EEE40792.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 604

 Score =  276 bits (705), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 155/336 (46%), Positives = 210/336 (62%), Gaps = 27/336 (8%)

Query: 242 HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
            +FGD+QCN  ++L KI+K     KNP DI+    ++    L  N S++K+   +E+A P
Sbjct: 43  EEFGDYQCNVCLSLSKIYK-----KNPRDISNDFINL----LNKNKSISKLCKSLEIAGP 93

Query: 302 GFVNVFLSRVYAGEQIK-DIIVNGVQPPTLNKKL------RVLVDFSSPNIAKEMHVGHL 354
           GF+N+ L       +IK +I  N      + K L      +V+VDFSSPNIAKEMHVGHL
Sbjct: 94  GFINIKLKDAVLINEIKSNIQCNRAGITLIRKDLDSGFSNKVIVDFSSPNIAKEMHVGHL 153

Query: 355 RSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQ 412
           RSTIIGD+ISR+ E  G++V+RLNHVGDWGTQFGMLI  L+D + + L +     I+DL 
Sbjct: 154 RSTIIGDSISRIFELRGYEVLRLNHVGDWGTQFGMLITQLKDLYSNDLEEIGKIKISDLV 213

Query: 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL 472
            FYKESKKRFD +  F+KR+ + VV LQR D    KAW+++CD SR++F +IY  L + +
Sbjct: 214 EFYKESKKRFDNESEFQKRSREEVVKLQRGDIKSIKAWKLLCDQSRKEFDEIYKNLKIKI 273

Query: 473 TERGESFYQKHMEQLVPYLEKKGLLELDDGRKI-----MWGEDRGSIPMTIVKSDGGFTY 527
            ERGESFY   ++ ++  L  K +L  D G K      M  ++   +P+ I K DGGF Y
Sbjct: 274 EERGESFYNPFLKSVIDDLNLKKILVEDQGAKCVFLDGMTNKEGKPLPLIIQKKDGGFNY 333

Query: 528 DTSDLAAIRQRIEE----EKADWIVYVTDLGQGVHF 559
            T+DLAAIR R  +    + A  I+YVTD GQ  HF
Sbjct: 334 ATTDLAAIRYRFNKPPNGDDASRIIYVTDHGQANHF 369



 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/349 (41%), Positives = 196/349 (56%), Gaps = 60/349 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQA 622
           STIIGD+ISR+ E  G++V+RLNHVGDWGTQFGMLI  L+D + + L +     I+DL  
Sbjct: 155 STIIGDSISRIFELRGYEVLRLNHVGDWGTQFGMLITQLKDLYSNDLEEIGKIKISDLVE 214

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYKESKKRFD +  F+KR+ + VV LQR D    KAW+++CD SR++F +IY  L + + 
Sbjct: 215 FYKESKKRFDNESEFQKRSREEVVKLQRGDIKSIKAWKLLCDQSRKEFDEIYKNLKIKIE 274

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   ++ ++  L  K  L             +T K G                 
Sbjct: 275 ERGESFYNPFLKSVIDDLNLKKILVEDQGAKCVFLDGMTNKEGKPLPLIIQKKDGGFNYA 334

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 I+YVTD GQ  HF  + + AKKA  + P   ++D V F
Sbjct: 335 TTDLAAIRYRFNKPPNGDDASRIIYVTDHGQANHFAGVFQVAKKAKWI-PENRQVDHVPF 393

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQA 807
           G+V G D KK KTR G+T++L +LL+E +RR+    L +LKD+ R+   T   ++   + 
Sbjct: 394 GLVQGIDGKKLKTREGETIRLKDLLNEAVRRAKEDLLKRLKDEERYE--TEEFIANTSRI 451

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           +  G +KYADLS NR  +Y FSFDKML   GNTA YLLY   RI  I R
Sbjct: 452 IGLGAVKYADLSQNRITNYQFSFDKMLSLNGNTAPYLLYTLVRILGIKR 500



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 106/188 (56%), Gaps = 15/188 (7%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            L +LKD+ R+   T   ++   + +  G +KYADLS NR  +Y FSFDKML   GNTA Y
Sbjct: 430  LKRLKDEERYE--TEEFIANTSRIIGLGAVKYADLSQNRITNYQFSFDKMLSLNGNTAPY 487

Query: 994  LLYAYTRIASIARTAGI--NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            LLY   RI  I R      +S+D +       V+ EH+ E+ L + LL+ ++V++ + +D
Sbjct: 488  LLYTLVRILGIKRKNDFVYDSKDFQY------VNYEHKSEWKLIRKLLKFDEVIISIEKD 541

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LC YL+++   F+ FYD    ++++     K +   RL L + TAK +K   ++L
Sbjct: 542  LMPNRLCNYLFELCQTFNRFYDQVPILKEE-----KYIKISRLNLCDLTAKTLKLSLELL 596

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 597  GIETLERM 604



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 16/114 (14%)

Query: 46  HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
            +FGD+QCN  ++L KI+     KKNP DI+    ++    L  N S++K+   +E A P
Sbjct: 43  EEFGDYQCNVCLSLSKIY-----KKNPRDISNDFINL----LNKNKSISKLCKSLEIAGP 93

Query: 106 GFVNVFLS-RVYAGEQMKDIIVNGVQPPTLNKKL------RVLVDFSSPNIARK 152
           GF+N+ L   V   E   +I  N      + K L      +V+VDFSSPNIA++
Sbjct: 94  GFINIKLKDAVLINEIKSNIQCNRAGITLIRKDLDSGFSNKVIVDFSSPNIAKE 147


>gi|282899871|ref|ZP_06307832.1| Arginyl-tRNA synthetase, class Ic [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195141|gb|EFA70077.1| Arginyl-tRNA synthetase, class Ic [Cylindrospermopsis raciborskii
           CS-505]
          Length = 585

 Score =  276 bits (705), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 151/335 (45%), Positives = 216/335 (64%), Gaps = 25/335 (7%)

Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
           VA++N K    FGDFQ N A++L K    +          ++IA+ +  EL     ++ +
Sbjct: 32  VAASNPK----FGDFQANVALSLSKKLGMQ---------PRAIATSIVEEL----DVSDM 74

Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT-LNKKLRVLVDFSSPNIAKEMHV 351
            +  E+A PGF+N+ L   Y   Q+  I  +     T +++  + +VDFSSPNIAKEMHV
Sbjct: 75  CEVPEIAGPGFINLKLQTSYLESQLNAIKTDPRLGVTRVDQPEKQIVDFSSPNIAKEMHV 134

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIA 409
           GHLRSTIIGD I+R+LE+ GH V+RLNHVGDWGTQFGMLIA+L++ +P  LT +    I 
Sbjct: 135 GHLRSTIIGDCIARILEFRGHQVLRLNHVGDWGTQFGMLIAYLREVYPQALTTANVLNIG 194

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL +FY+++K+RFD D  F++RA Q VV LQ    D   AW+++C  SR++FQ IYD L+
Sbjct: 195 DLVSFYRQAKQRFDADASFQERARQEVVKLQAGAEDTTHAWKLLCAQSRKEFQTIYDLLD 254

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGG 524
           + + ERGESFY   + ++V  LE  GL+E + G K ++ E     +  ++P+ + KSDGG
Sbjct: 255 IKIIERGESFYNPFLSKIVKDLETAGLVEENQGAKCVFLEGFTNREGEALPLIVQKSDGG 314

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           + Y T+DLAA+  RI E++A  I+YVTD GQ  HF
Sbjct: 315 YNYATTDLAALLYRIREDQAKRIIYVTDAGQANHF 349



 Score =  265 bits (678), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 150/351 (42%), Positives = 202/351 (57%), Gaps = 52/351 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD I+R+LE+ GH V+RLNHVGDWGTQFGMLIA+L++ +P  LT +    I DL +
Sbjct: 139 STIIGDCIARILEFRGHQVLRLNHVGDWGTQFGMLIAYLREVYPQALTTANVLNIGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD D  F++RA Q VV LQ    D   AW+++C  SR++FQ IYD L++ + 
Sbjct: 199 FYRQAKQRFDADASFQERARQEVVKLQAGAEDTTHAWKLLCAQSRKEFQTIYDLLDIKII 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   + ++V  LE  G +              T + G                 
Sbjct: 259 ERGESFYNPFLSKIVKDLETAGLVEENQGAKCVFLEGFTNREGEALPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF    + A+KAG + P    +  + FG+VL
Sbjct: 319 TTDLAALLYRIREDQAKRIIYVTDAGQANHFAQFFQVAQKAGWI-PADVELVHIPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT--ELTPTELSEAQQAVAYGCI 813
           GED KKFKTRSGDTV+L +LLDE + R+   L+ + +    + TP  +    Q V    +
Sbjct: 378 GEDGKKFKTRSGDTVRLKDLLDEAVFRARTDLEARLQQEGRQETPEFIQNVAQTVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADLS NR   YVFS+DKML  +GNTA Y+LYAY R   I+R   I+ E+
Sbjct: 438 KYADLSQNRTSSYVFSYDKMLSLKGNTAPYMLYAYVRTQGISREGKIDFEN 488



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 111/184 (60%), Gaps = 10/184 (5%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +L+ + R    TP  +    Q V    +KYADLS NR   YVFS+DKML  +GNTA Y+L
Sbjct: 412  RLQQEGRQE--TPEFIQNVAQTVGISAVKYADLSQNRTSSYVFSYDKMLSLKGNTAPYML 469

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YAY R   I+R   I+ E+L   A    + L+ E E ALAK LL+++++L  V +DL  +
Sbjct: 470  YAYVRTQGISREGKIDFENL---APDAKIILQEETELALAKNLLQLDEILYQVEQDLLPN 526

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1115
             LC+YLY++S  F++FYD C  ++  AE  I+   T RL+L   TAK ++   ++L I+ 
Sbjct: 527  RLCDYLYNLSEKFNKFYDRCPVLK--AEDPIR---TSRLMLCYLTAKTLRLGLNLLGIKV 581

Query: 1116 VHKM 1119
            + ++
Sbjct: 582  IERI 585



 Score = 46.6 bits (109), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 18/117 (15%)

Query: 37  VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
           VA++N K    FGDFQ N A++L K    +          ++IA+ +  EL     ++ +
Sbjct: 32  VAASNPK----FGDFQANVALSLSKKLGMQ---------PRAIATSIVEEL----DVSDM 74

Query: 97  IDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPT-LNKKLRVLVDFSSPNIARK 152
            +  E A PGF+N+ L   Y   Q+  I  +     T +++  + +VDFSSPNIA++
Sbjct: 75  CEVPEIAGPGFINLKLQTSYLESQLNAIKTDPRLGVTRVDQPEKQIVDFSSPNIAKE 131


>gi|434403833|ref|YP_007146718.1| arginyl-tRNA synthetase [Cylindrospermum stagnale PCC 7417]
 gi|428258088|gb|AFZ24038.1| arginyl-tRNA synthetase [Cylindrospermum stagnale PCC 7417]
          Length = 588

 Score =  276 bits (705), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 150/327 (45%), Positives = 211/327 (64%), Gaps = 25/327 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGD+Q N A++L K        K P    ++IA+ +  +L     L+ + + +E+A PG
Sbjct: 38  KFGDYQANVALSLSKRLG-----KQP----RAIATAIVDKL----DLSDICEPLEIAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L   +   Q+  I  +   GV  P      R +VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85  FINLKLKTAFLEAQLNAIQADPRLGV--PMAKTPQREIVDFSSPNIAKEMHVGHLRSTII 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKE 417
           GD I+R+LE+LGHDV+RLNHVGDWGTQFGMLI +L++ +P+ LT +    I DL +FY+E
Sbjct: 143 GDAIARILEFLGHDVLRLNHVGDWGTQFGMLITYLREVYPEALTTANALDIGDLVSFYRE 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +K RFD DE F++ A Q VV LQ    D   AW+++C+ SR +FQ IYD L+V + ERGE
Sbjct: 203 AKLRFDTDEAFQETARQEVVRLQAGAEDTIHAWKLLCEQSRLEFQIIYDLLDVHVMERGE 262

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDL 532
           SFY   +  +V  L+K  LL  + G K ++       +   +P+ + K+DGG+ Y T+DL
Sbjct: 263 SFYNSFLPGIVEDLDKSSLLVENQGAKCVFLDGFTNREGEPLPLIVQKTDGGYNYATTDL 322

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
           A++R RI++++A  I+YVTD GQ  HF
Sbjct: 323 ASLRYRIQQDEAKRIIYVTDSGQANHF 349



 Score =  266 bits (679), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 155/351 (44%), Positives = 207/351 (58%), Gaps = 52/351 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD I+R+LE+LGHDV+RLNHVGDWGTQFGMLI +L++ +P+ LT +    I DL +
Sbjct: 139 STIIGDAIARILEFLGHDVLRLNHVGDWGTQFGMLITYLREVYPEALTTANALDIGDLVS 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+K RFD DE F++ A Q VV LQ    D   AW+++C+ SR +FQ IYD L+V + 
Sbjct: 199 FYREAKLRFDTDEAFQETARQEVVRLQAGAEDTIHAWKLLCEQSRLEFQIIYDLLDVHVM 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L+K   L              T + G                 
Sbjct: 259 ERGESFYNSFLPGIVEDLDKSSLLVENQGAKCVFLDGFTNREGEPLPLIVQKTDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF    + A+KAG + P+   +  V FG+VL
Sbjct: 319 TTDLASLRYRIQQDEAKRIIYVTDSGQANHFAQFFQVARKAGWI-PDDVELVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KKFKTRSGDTV+L +LLDE + R+   L+ + +  E   TE  ++   + V    +
Sbjct: 378 GEDGKKFKTRSGDTVRLRDLLDEAIARTRADLEARLQEEERQETEEFINNVAEVVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADLS NR  +Y+FS+DKMLD +GNTA Y+LYAY RI  I+R   IN ++
Sbjct: 438 KYADLSQNRTSNYIFSYDKMLDLKGNTAPYMLYAYARIQGISRKGDINFQE 488



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 106/170 (62%), Gaps = 7/170 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   + V    +KYADLS NR  +Y+FS+DKMLD +GNTA Y+LYAY RI  I+R   I
Sbjct: 425  INNVAEVVGISAVKYADLSQNRTSNYIFSYDKMLDLKGNTAPYMLYAYARIQGISRKGDI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            N ++L     +  V L+H  E ALAK LL++++V+  V +DL  + LCEYLY++   F+ 
Sbjct: 485  NFQEL---GDNAKVILQHPTELALAKDLLQLDEVISTVEQDLLPNRLCEYLYELCKKFNL 541

Query: 1071 FYDNCYCIE-KDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FYD  + +   +AE   +   T RL+L + TA+ +K   ++L I+ + +M
Sbjct: 542  FYDRIHGVPILEAE---EPQRTSRLILCDLTARTLKLGLNLLGIQVLERM 588



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 18/109 (16%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGD+Q N A++L K        K P    ++IA+ +  +L     L+ + + +E A PG
Sbjct: 38  KFGDYQANVALSLSKRLG-----KQP----RAIATAIVDKL----DLSDICEPLEIAGPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   +   Q+  I  +   GV  P      R +VDFSSPNIA++
Sbjct: 85  FINLKLKTAFLEAQLNAIQADPRLGV--PMAKTPQREIVDFSSPNIAKE 131


>gi|119511908|ref|ZP_01631006.1| arginyl-tRNA synthetase [Nodularia spumigena CCY9414]
 gi|119463404|gb|EAW44343.1| arginyl-tRNA synthetase [Nodularia spumigena CCY9414]
          Length = 470

 Score =  275 bits (703), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 159/348 (45%), Positives = 209/348 (60%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STI+GD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++ +P+ LT +    I DL +
Sbjct: 21  STILGDSIARILEFQGHDVLRLNHVGDWGTQFGMLITYLREVYPEALTTANALDIGDLVS 80

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFDEDE F++ A Q VV LQ    D   AW+++C+ SRR+FQ IYD L+V + 
Sbjct: 81  FYRKAKQRFDEDEAFQETARQEVVRLQAGAEDTLHAWKLLCEQSRREFQIIYDLLDVQVI 140

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  L K G L              T + G                 
Sbjct: 141 ERGESFYNPLLPSVVEDLAKSGLLVENQGAQVVFLEGFTNREGEPMPLIVQKSDGGYNYA 200

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF    + A+KAG +  N   +  V FG+VL
Sbjct: 201 TTDLAALRYRIQQDEAKRIIYVTDSGQSNHFAQFFQVARKAGWVR-NDVELVHVPFGLVL 259

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED KKFKTRSGDTV+L +LLDE + R+   L+ + +  E   TE  +SE  + V    +
Sbjct: 260 GEDGKKFKTRSGDTVRLRDLLDEAVIRARADLEARLKEEEREETEQFISEVAEIVGISAV 319

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  DY+FS+DKMLD +GNTA Y+LYAY RI  I+R  GIN
Sbjct: 320 KYADLSQNRTSDYIFSYDKMLDLKGNTAPYMLYAYARIQGISRKGGIN 367



 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 126/230 (54%), Positives = 171/230 (74%), Gaps = 7/230 (3%)

Query: 337 LVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD 396
           +VDFSSPNIAKEMHVGHLRSTI+GD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++
Sbjct: 2   IVDFSSPNIAKEMHVGHLRSTILGDSIARILEFQGHDVLRLNHVGDWGTQFGMLITYLRE 61

Query: 397 KFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMIC 454
            +P+ LT +    I DL +FY+++K+RFDEDE F++ A Q VV LQ    D   AW+++C
Sbjct: 62  VYPEALTTANALDIGDLVSFYRKAKQRFDEDEAFQETARQEVVRLQAGAEDTLHAWKLLC 121

Query: 455 DVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DR 511
           + SRR+FQ IYD L+V + ERGESFY   +  +V  L K GLL  + G ++++ E   +R
Sbjct: 122 EQSRREFQIIYDLLDVQVIERGESFYNPLLPSVVEDLAKSGLLVENQGAQVVFLEGFTNR 181

Query: 512 GSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
              PM ++  KSDGG+ Y T+DLAA+R RI++++A  I+YVTD GQ  HF
Sbjct: 182 EGEPMPLIVQKSDGGYNYATTDLAALRYRIQQDEAKRIIYVTDSGQSNHF 231



 Score =  144 bits (362), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 110/170 (64%), Gaps = 7/170 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            +SE  + V    +KYADLS NR  DY+FS+DKMLD +GNTA Y+LYAY RI  I+R  GI
Sbjct: 307  ISEVAEIVGISAVKYADLSQNRTSDYIFSYDKMLDLKGNTAPYMLYAYARIQGISRKGGI 366

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            N  +L    ++  V L+HE E ALAK LL+++ V+  V ++L  + LCEYLY++S  F++
Sbjct: 367  NFAEL---GENVKVLLQHETELALAKYLLQLDGVISSVEQELLPNRLCEYLYELSKKFNQ 423

Query: 1071 FYDNCYCIEK-DAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FYD    +   +AE   + + T RL+L + TA+ ++   D+L IR + +M
Sbjct: 424  FYDRNQGVRVLEAE---EPLRTSRLVLCDLTARTLRLGLDLLGIRVLERM 470


>gi|219114449|ref|XP_002176395.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402641|gb|EEC42631.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 564

 Score =  275 bits (702), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/372 (40%), Positives = 224/372 (60%), Gaps = 32/372 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEK----KNPFDIAQSIASVVTSELATNPSLAKVIDKIEV 298
           K GD+QCN AM +    K         ++P D+A+++ + +     T+P    VI ++ +
Sbjct: 3   KHGDYQCNAAMPVFAALKKDSSMPDNIRSPPDVARALMAAIGD---THP----VIMELSM 55

Query: 299 AKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
             PGFV   +   +    +   +  G+ P  L  K   +VDFSSPNIAKEMHVGHLRSTI
Sbjct: 56  NGPGFVLCRIRPSFLETHVDRFLQTGILPKPLIPKQTCVVDFSSPNIAKEMHVGHLRSTI 115

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKS---------PPIA 409
           IG+ + R+LE++GHDV R+NHVGDWGTQFGMLI +L++++P+    +         P I 
Sbjct: 116 IGEAVCRILEFVGHDVHRINHVGDWGTQFGMLIQYLKEEYPEVANHNSDVDDQAALPNIT 175

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL  FYK +K RFDE   FKK +   VVALQ  DP+  + W+++CDVSR++F+K+Y RL+
Sbjct: 176 DLTQFYKSAKARFDESADFKKTSQTNVVALQSGDPECLRIWKLLCDVSRQEFEKVYQRLD 235

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDT 529
           VT  E GESFY   +  ++   E  G + +++G       D+  +P+ + KSDGG+ YD+
Sbjct: 236 VTTHEFGESFYNAKIPPVIAEFEAAGKISVEEGGAKCVFVDKFKVPLMLQKSDGGYGYDS 295

Query: 530 SDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRL-----LEYLGHDVV 584
           +D+AA++ R++E KAD I+ +TD  QG HF+++  +   G  I  L     LE++G   V
Sbjct: 296 TDMAALKYRLQELKADRIIVITDFSQGDHFKMVYAA---GRDIGWLDRNQQLEHIGFGTV 352

Query: 585 RLNHVGDWGTQF 596
           +    G+ G +F
Sbjct: 353 Q----GEDGKRF 360



 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 200/347 (57%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKS---------P 615
           STIIG+ + R+LE++GHDV R+NHVGDWGTQFGMLI +L++++P+    +         P
Sbjct: 113 STIIGEAVCRILEFVGHDVHRINHVGDWGTQFGMLIQYLKEEYPEVANHNSDVDDQAALP 172

Query: 616 PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
            I DL  FYK +K RFDE   FKK +   VVALQ  DP+  + W+++CDVSR++F+K+Y 
Sbjct: 173 NITDLTQFYKSAKARFDESADFKKTSQTNVVALQSGDPECLRIWKLLCDVSRQEFEKVYQ 232

Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNLS-------------------LTKKLG--- 713
           RL+VT  E GESFY   +  ++   E  G +S                   L K  G   
Sbjct: 233 RLDVTTHEFGESFYNAKIPPVIAEFEAAGKISVEEGGAKCVFVDKFKVPLMLQKSDGGYG 292

Query: 714 --------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                               I+ +TD  QG HF+++    +  G L+ N+ +++ +GFG 
Sbjct: 293 YDSTDMAALKYRLQELKADRIIVITDFSQGDHFKMVYAAGRDIGWLDRNQ-QLEHIGFGT 351

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQAVAYG 811
           V GED K+FKTRSGDTV+L +LLDE + R    L+++  +  + +   E+ +  +A+ YG
Sbjct: 352 VQGEDGKRFKTRSGDTVRLVDLLDEAVERMEGSLRERIESDKSNIALDEVHDIAEAIGYG 411

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
            +KY DL  N   +Y FS+D+MLD +G+T VYLLYA  R+ SI   A
Sbjct: 412 AVKYYDLRRNPTTNYKFSYDQMLDTKGDTGVYLLYARVRLESIVAKA 458



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 97/174 (55%), Gaps = 13/174 (7%)

Query: 950  ELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA- 1008
            E+ +  +A+ YG +KY DL  N   +Y FS+D+MLD +G+T VYLLYA  R+ SI   A 
Sbjct: 400  EVHDIAEAIGYGAVKYYDLRRNPTTNYKFSYDQMLDTKGDTGVYLLYARVRLESIVAKAK 459

Query: 1009 ---GINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS 1065
                I+ E+L        V L H  E  L   L +  DV+     DL  +H+CEY+Y ++
Sbjct: 460  QDYSIDVEEL--IQNGEKVRLTHPSERNLVFQLQQFPDVIEQTLEDLFPYHVCEYVYKLA 517

Query: 1066 TAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             A S+F  NC  +  D   ++KT    RLLL  AT+  M +CFD+L IR V ++
Sbjct: 518  VATSDFIKNCMVLGSD---EMKT----RLLLCHATSLAMHQCFDLLGIRHVKRI 564



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEK----KNPFDIAQSIASVVTSELATNPSLAKVIDKIEA 102
           K GD+QCN AM +    K         ++P D+A+++ + +     T+P    VI ++  
Sbjct: 3   KHGDYQCNAAMPVFAALKKDSSMPDNIRSPPDVARALMAAIGD---THP----VIMELSM 55

Query: 103 AKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             PGFV   +   +    +   +  G+ P  L  K   +VDFSSPNIA++
Sbjct: 56  NGPGFVLCRIRPSFLETHVDRFLQTGILPKPLIPKQTCVVDFSSPNIAKE 105


>gi|357477051|ref|XP_003608811.1| Arginyl-tRNA synthetase [Medicago truncatula]
 gi|355509866|gb|AES91008.1| Arginyl-tRNA synthetase [Medicago truncatula]
          Length = 589

 Score =  274 bits (701), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 156/364 (42%), Positives = 224/364 (61%), Gaps = 26/364 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASV-ASTNEKYVHKFGDFQCNDAMALCKIFKDKG- 263
           SV+  L+++F  +++   P   D    V A    K   K  D+QCN+AM+L  I K+K  
Sbjct: 10  SVKKQLAELFRESLKATVPSEPDVVPLVEACVANKNGVKHADYQCNNAMSLFPIIKEKQP 69

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
           E +NP  + + IA         N   +++++   VA  G+VN+ LS+ +  + ++ ++ +
Sbjct: 70  EFRNPRSLGEGIAK--------NLPPSEMVESCFVAGSGYVNIVLSKKWIAQSLQKMLTS 121

Query: 324 GVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHD-VVRLNHV 380
           G+    P L  K R+LVDFSSPNIAKEMHVGHLRSTIIGDTI+R+LE+   + ++R NH+
Sbjct: 122 GIHSWAPRLPVK-RILVDFSSPNIAKEMHVGHLRSTIIGDTIARMLEFCQPECLIRRNHI 180

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFG++         D       I DLQ FYK SK ++D D  FK +A Q VV LQ
Sbjct: 181 GDWGTQFGIIRTGGNINECD-------IGDLQEFYKTSKSKYDSDPDFKTKARQSVVKLQ 233

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
           R DP Y++AW  IC+VSR ++ K+Y RL V L E+ ESFY  ++   +  LEK GL+E  
Sbjct: 234 RGDPKYREAWHKICEVSRAEYNKVYRRLGVHLEEKPESFYNPYIPPTLKKLEKLGLIEDS 293

Query: 501 DGRKIMW--GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           DG ++++  G DR   P+   KSDGG+ Y ++DLA++  R+  EK DW +YVTD+GQ  H
Sbjct: 294 DGARVIFVEGVDR---PLIARKSDGGYNYFSTDLASLWYRLNIEKIDWNIYVTDVGQWQH 350

Query: 559 FRLL 562
           F +L
Sbjct: 351 FDML 354



 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/346 (40%), Positives = 196/346 (56%), Gaps = 53/346 (15%)

Query: 565 STIIGDTISRLLEYLGHD-VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 623
           STIIGDTI+R+LE+   + ++R NH+GDWGTQFG++         D       I DLQ F
Sbjct: 155 STIIGDTIARMLEFCQPECLIRRNHIGDWGTQFGIIRTGGNINECD-------IGDLQEF 207

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           YK SK ++D D  FK +A Q VV LQR DP Y++AW  IC+VSR ++ K+Y RL V L E
Sbjct: 208 YKTSKSKYDSDPDFKTKARQSVVKLQRGDPKYREAWHKICEVSRAEYNKVYRRLGVHLEE 267

Query: 684 RGESFYQKHMEQLVPYLEKKGNL-----------------------------------SL 708
           + ESFY  ++   +  LEK G +                                   SL
Sbjct: 268 KPESFYNPYIPPTLKKLEKLGLIEDSDGARVIFVEGVDRPLIARKSDGGYNYFSTDLASL 327

Query: 709 TKKLGI------VYVTDLGQGVHFRLLEECAKKAGILNPNKTR----MDFVGFGVVLGED 758
             +L I      +YVTD+GQ  HF +L +  ++AG   P           VGFG+V G+D
Sbjct: 328 WYRLNIEKIDWNIYVTDVGQWQHFDMLFKAFRRAGWWLPKDANEYPICTHVGFGLVCGDD 387

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADL 818
            K+F++RS +TV+L +LLDE   R  D L +++     T  E+ +  +A+ YG +KYADL
Sbjct: 388 GKRFRSRSSETVRLVDLLDEAKSRCKDTLLERDNAKGWTEEEIDKTAEAIGYGAVKYADL 447

Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
             NR+ +Y FSFD+ML+D+GNTAVYLLYA+ RI SI   +G + E+
Sbjct: 448 KINRSTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIEKSGKDIEE 493



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 115/189 (60%), Gaps = 11/189 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R  D L +++     T  E+ +  +A+ YG +KYADL  NR+ +Y FSFD+ML+D+GNTA
Sbjct: 411  RCKDTLLERDNAKGWTEEEIDKTAEAIGYGAVKYADLKINRSTNYTFSFDQMLNDKGNTA 470

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            VYLLYA+ RI SI   +G + E+L+   ++  + L+H+ E  LA  LL+  +V +    +
Sbjct: 471  VYLLYAHARICSIIEKSGKDIEELK---KNGSLVLDHKDECTLALHLLQFTEVFVESCSN 527

Query: 1052 LCLHHLCEYLYDISTAFS-EFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
            L  + LCEYLYD++  F+ +FY NC  +    E       T RLLL EAT  VM++CF +
Sbjct: 528  LLPNKLCEYLYDLAEIFTKKFYSNCQVVGSPEE-------TSRLLLCEATLTVMRQCFYL 580

Query: 1111 LNIRTVHKM 1119
            L I  V K+
Sbjct: 581  LGIEPVDKL 589



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 13/147 (8%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASV-ASTNEKYVHKFGDFQCNDAMALCKIFKDK-G 67
           SV+  L+++F  +++   P   D    V A    K   K  D+QCN+AM+L  I K+K  
Sbjct: 10  SVKKQLAELFRESLKATVPSEPDVVPLVEACVANKNGVKHADYQCNNAMSLFPIIKEKQP 69

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
           E +NP  + + IA         N   +++++    A  G+VN+ LS+ +  + ++ ++ +
Sbjct: 70  EFRNPRSLGEGIAK--------NLPPSEMVESCFVAGSGYVNIVLSKKWIAQSLQKMLTS 121

Query: 128 GVQ--PPTLNKKLRVLVDFSSPNIARK 152
           G+    P L  K R+LVDFSSPNIA++
Sbjct: 122 GIHSWAPRLPVK-RILVDFSSPNIAKE 147


>gi|308800206|ref|XP_003074884.1| Args arginyl-tRNA synthetase (IC) [Ostreococcus tauri]
 gi|116061434|emb|CAL52152.1| Args arginyl-tRNA synthetase (IC) [Ostreococcus tauri]
          Length = 603

 Score =  273 bits (699), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 139/321 (43%), Positives = 196/321 (61%), Gaps = 14/321 (4%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKK--NPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
            GD+QC+ AM +    +  GE    NP ++A  I   ++             D I +A  
Sbjct: 93  LGDYQCSSAMQIFSALRKAGETDFCNPREVAAVIVDGISD--------TTTFDSITIAGA 144

Query: 302 GFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           GF+N  LS  +   +++++    V+P +  +   VLVDFSSPNIAKEMHVGHLRSTIIGD
Sbjct: 145 GFINFKLSDHFILTRLREL-GKTVKPTSSGESGSVLVDFSSPNIAKEMHVGHLRSTIIGD 203

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            +  + E+ G   +RLNHVGDWGTQFGMLI  + D   + ++    ++DLQ  YK +K+R
Sbjct: 204 ALCNVFEFCGLKTIRLNHVGDWGTQFGMLIQFMTD---NKVSPDSAVSDLQECYKRAKER 260

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQ 481
           FD+D+ FK ++ Q V+ LQ +D D  + W+ ICD SR +FQ IYDRLN+++ ERGES+Y 
Sbjct: 261 FDQDDDFKSQSKQAVIKLQSYDADALRTWKQICDASRAEFQTIYDRLNISIIERGESYYN 320

Query: 482 KHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEE 541
             +  ++  L  K ++  D G   ++ +D    P+   KSDGGF Y ++DLAAIR R  E
Sbjct: 321 DMIPAVLDELVAKNVVVEDAGALCIFDDDHAEAPVICRKSDGGFNYASTDLAAIRHRALE 380

Query: 542 EKADWIVYVTDLGQGVHFRLL 562
           EK D I+YVTD GQ  HFR +
Sbjct: 381 EKVDRIIYVTDQGQQKHFRAI 401



 Score =  219 bits (559), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 133/336 (39%), Positives = 183/336 (54%), Gaps = 70/336 (20%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD +  + E+ G   +RLNHVGDWGTQFGMLI  + D   + ++    ++DLQ  Y
Sbjct: 198 STIIGDALCNVFEFCGLKTIRLNHVGDWGTQFGMLIQFMTD---NKVSPDSAVSDLQECY 254

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K +K+RFD+D+ FK ++ Q V+ LQ +D D  + W+ ICD SR +FQ IYDRLN+++ ER
Sbjct: 255 KRAKERFDQDDDFKSQSKQAVIKLQSYDADALRTWKQICDASRAEFQTIYDRLNISIIER 314

Query: 685 GESFYQKH----MEQLVP---YLEKKGNL------------------------------- 706
           GES+Y       +++LV     +E  G L                               
Sbjct: 315 GESYYNDMIPAVLDELVAKNVVVEDAGALCIFDDDHAEAPVICRKSDGGFNYASTDLAAI 374

Query: 707 ---SLTKKLG-IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKF 762
              +L +K+  I+YVTD GQ  HFR + + A  AG            G G          
Sbjct: 375 RHRALEEKVDRIIYVTDQGQQKHFRAIFKTAHAAGW-----------GHGA--------- 414

Query: 763 KTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822
              SG+TVKL  LLDE   R L  LK+K   T+L+  ELS A + +    +KYADL +NR
Sbjct: 415 ---SGETVKLKSLLDEAEERCLQFLKEKG--TDLSAEELSTASRILGVSSVKYADLHNNR 469

Query: 823 NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
              Y FSFD+MLD +GNTA+YL Y++ R+A+I R A
Sbjct: 470 LTAYTFSFDRMLDLKGNTAMYLQYSHARVATILRKA 505



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 108/209 (51%), Gaps = 15/209 (7%)

Query: 911  WRGVGRGQEEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH 970
            W     G+     SL      R L  LK+K   T+L+  ELS A + +    +KYADL +
Sbjct: 410  WGHGASGETVKLKSLLDEAEERCLQFLKEKG--TDLSAEELSTASRILGVSSVKYADLHN 467

Query: 971  NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEK 1030
            NR   Y FSFD+MLD +GNTA+YL Y++ R+A+I R A   + DL +      +  E+  
Sbjct: 468  NRLTAYTFSFDRMLDLKGNTAMYLQYSHARVATILRKA--PTLDLPLDG----LHFENAA 521

Query: 1031 EFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVH 1090
            E  LA  L++++DVL    ++L    +C+YLY + T F+ FY  C  I  + E       
Sbjct: 522  ERLLAVHLIKLDDVLAATMKELAPSKICDYLYTLCTMFNNFYAECKVIGGENEAS----- 576

Query: 1091 TGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              RL L   TA  MK  F +L +  + ++
Sbjct: 577  --RLFLCMRTAATMKIAFSLLGMEPLERL 603



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 13/119 (10%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKK--NPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
            GD+QC+ AM +    +  GE    NP ++A  I   ++             D I  A  
Sbjct: 93  LGDYQCSSAMQIFSALRKAGETDFCNPREVAAVIVDGISD--------TTTFDSITIAGA 144

Query: 106 GFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           GF+N  LS  +   +++++    V+P +  +   VLVDFSSPNIA++      HL S I
Sbjct: 145 GFINFKLSDHFILTRLREL-GKTVKPTSSGESGSVLVDFSSPNIAKE--MHVGHLRSTI 200


>gi|124024975|ref|YP_001014091.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|166232821|sp|A2C016.1|SYR_PROM1 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|123960043|gb|ABM74826.1| Arginyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 607

 Score =  273 bits (698), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 160/384 (41%), Positives = 232/384 (60%), Gaps = 40/384 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNE---KYVHKFGDFQCNDAMALCKIF 259
           + +   L +    A    FP+     KT+S+ + +        +FGDFQ N A++L K  
Sbjct: 2   LEISARLEEALNRAFTKVFPQEDRSSKTSSILTGSNLVPASKPEFGDFQINCALSLAKEI 61

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNV------FLSRVY- 312
                 + P DIAQ IA     +L  +    ++ +   +A PGF+N+       +S ++ 
Sbjct: 62  N-----RPPRDIAQQIAK----QLQQDNDFVRICNPPLIAGPGFINLSINSKTLISEIHF 112

Query: 313 ------AGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRL 366
                  G  +K    + ++    N   RV++DFSSPNIAKEMHVGHLRSTIIGD+++R+
Sbjct: 113 RLNDKRLGVPLKKFNTDKIEEEKSNN--RVIIDFSSPNIAKEMHVGHLRSTIIGDSLARV 170

Query: 367 LEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKS-PPIADLQAFYKESKKRFDE 424
           LE+ G++V+RLNHVGDWGTQFGMLI HL++  P+ L TK    I+DL  FY+++KKRFDE
Sbjct: 171 LEFCGYEVLRLNHVGDWGTQFGMLITHLKEVVPEVLHTKDVVEISDLVNFYRQAKKRFDE 230

Query: 425 DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHM 484
           D+IF+ ++   VV LQ  D +   AW+++C+ SR++FQKIYDRL++ LTERGESFY K +
Sbjct: 231 DQIFQNKSRSEVVNLQAGDKESLIAWQLLCNQSRKEFQKIYDRLDIKLTERGESFYNKFL 290

Query: 485 EQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI 539
             ++  L+ K LL  D G + ++     G+D    P+ I KSDGGF Y T+DLAAI+ R+
Sbjct: 291 VDVINDLKNKKLLINDQGAQCIFLDGLVGKDGKPQPIIIQKSDGGFNYATTDLAAIKYRL 350

Query: 540 ----EEEKADWIVYVTDLGQGVHF 559
                 + A  ++YVTD GQ  HF
Sbjct: 351 TIPPHGDGACRLIYVTDAGQASHF 374



 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 158/381 (41%), Positives = 221/381 (58%), Gaps = 61/381 (16%)

Query: 538 RIEEEKADWIVYV----TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
           +IEEEK++  V +     ++ + +H   L  STIIGD+++R+LE+ G++V+RLNHVGDWG
Sbjct: 130 KIEEEKSNNRVIIDFSSPNIAKEMHVGHLR-STIIGDSLARVLEFCGYEVLRLNHVGDWG 188

Query: 594 TQFGMLIAHLQDKFPDYL-TKSP-PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 651
           TQFGMLI HL++  P+ L TK    I+DL  FY+++KKRFDED+IF+ ++   VV LQ  
Sbjct: 189 TQFGMLITHLKEVVPEVLHTKDVVEISDLVNFYRQAKKRFDEDQIFQNKSRSEVVNLQAG 248

Query: 652 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKG------- 704
           D +   AW+++C+ SR++FQKIYDRL++ LTERGESFY K +  ++  L+ K        
Sbjct: 249 DKESLIAWQLLCNQSRKEFQKIYDRLDIKLTERGESFYNKFLVDVINDLKNKKLLINDQG 308

Query: 705 ----------------------------NLSLTKKLGIVY----------------VTDL 720
                                       N + T    I Y                VTD 
Sbjct: 309 AQCIFLDGLVGKDGKPQPIIIQKSDGGFNYATTDLAAIKYRLTIPPHGDGACRLIYVTDA 368

Query: 721 GQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL 780
           GQ  HF  + + AK A  + P   +++ V FG+V GED KK KTRSG+T++L +LLDE +
Sbjct: 369 GQASHFSGVFQIAKLANWI-PTDCQIEHVPFGLVQGEDGKKLKTRSGETIRLVDLLDEAI 427

Query: 781 RRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 838
           +R+ D LK++      +  E  + +    V    IKYADLS NR  +Y FSFDKML  +G
Sbjct: 428 QRARDDLKNRLNTESRSENENFIDKVSTTVGIASIKYADLSQNRISNYQFSFDKMLSLQG 487

Query: 839 NTAVYLLYAYTRIASIARTAG 859
           NTA YLLYA  RIA I+R  G
Sbjct: 488 NTAPYLLYALVRIAGISRKGG 508



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 13/193 (6%)

Query: 929  GLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
             ++R+ D LK++      +  E  + +    V    IKYADLS NR  +Y FSFDKML  
Sbjct: 426  AIQRARDDLKNRLNTESRSENENFIDKVSTTVGIASIKYADLSQNRISNYQFSFDKMLSL 485

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
            +GNTA YLLYA  RIA I+R  G    DL V++Q+  +     +E+ L + LL+++ ++ 
Sbjct: 486  QGNTAPYLLYALVRIAGISRKGG----DLNVSSQN--IQFNESQEWDLIRKLLQLDSIIA 539

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             V ++L  + LC YL+++S  F+ FYD    ++     +       RL+L   TA  +K 
Sbjct: 540  EVEKELLPNRLCGYLFELSQTFNRFYDQVPILKASEPSR-----ASRLVLCSITADTLKL 594

Query: 1107 CFDILNIRTVHKM 1119
               +L I T+ +M
Sbjct: 595  GMSLLGIPTLERM 607



 Score = 48.1 bits (113), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 29/162 (17%)

Query: 9   MSVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNE---KYVHKFGDFQCNDAMALCKIF 63
           + +   L +    A    FP+     KT+S+ + +        +FGDFQ N A++L K  
Sbjct: 2   LEISARLEEALNRAFTKVFPQEDRSSKTSSILTGSNLVPASKPEFGDFQINCALSLAKEI 61

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNV------FLSRVY- 116
                 + P DIAQ IA     +L  +    ++ +    A PGF+N+       +S ++ 
Sbjct: 62  N-----RPPRDIAQQIAK----QLQQDNDFVRICNPPLIAGPGFINLSINSKTLISEIHF 112

Query: 117 ------AGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
                  G  +K    + ++    N   RV++DFSSPNIA++
Sbjct: 113 RLNDKRLGVPLKKFNTDKIEEEKSNN--RVIIDFSSPNIAKE 152


>gi|123967742|ref|YP_001008600.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|123197852|gb|ABM69493.1| Arginyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 604

 Score =  273 bits (697), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 153/336 (45%), Positives = 208/336 (61%), Gaps = 27/336 (8%)

Query: 242 HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
            +FGD+QCN  ++L KI+K     KNP DI+    ++    L  N  ++K+   +E+A P
Sbjct: 43  EEFGDYQCNVCLSLSKIYK-----KNPRDISNDFINL----LNKNKRISKLCKSLEIAGP 93

Query: 302 GFVNVFLS-RVYAGEQIKDIIVNGVQPPTLNKKL------RVLVDFSSPNIAKEMHVGHL 354
           GF+N+ L   V   E   +I  N    P + K L      +V+VDFSSPNIAKEMHVGHL
Sbjct: 94  GFINIKLKDEVLINEIKSNIQCNRAGIPLIRKDLESGLSNKVIVDFSSPNIAKEMHVGHL 153

Query: 355 RSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQ 412
           RSTIIGD+ISR+ E  G++V+RLNHVGDWGTQFGMLI  L+D + + L +     I+DL 
Sbjct: 154 RSTIIGDSISRIFELRGYEVLRLNHVGDWGTQFGMLITQLKDLYSNDLEEIGKIKISDLV 213

Query: 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL 472
            FYKESKKRFD +  F+KR+ + VV LQ  D    KAW+++CD SR++F +IY  L + +
Sbjct: 214 EFYKESKKRFDNESEFQKRSREEVVKLQSGDIKSIKAWKLLCDQSRKEFDEIYKNLKIKI 273

Query: 473 TERGESFYQKHMEQLVPYLEKKGLLELDDGRKI-----MWGEDRGSIPMTIVKSDGGFTY 527
            ERGESFY   ++ ++  L  + +L  D G K      M  ++   +P+ I K DGGF Y
Sbjct: 274 EERGESFYNPFLKSVIDDLNLEKILVEDQGAKCVFLDGMTNKEGKPLPLIIQKKDGGFNY 333

Query: 528 DTSDLAAIRQRIEE----EKADWIVYVTDLGQGVHF 559
            T+DLAAIR R  +    + A  I+YVTD GQ  HF
Sbjct: 334 ATTDLAAIRYRFNKPPNGDDASRIIYVTDHGQANHF 369



 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/349 (41%), Positives = 197/349 (56%), Gaps = 60/349 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQA 622
           STIIGD+ISR+ E  G++V+RLNHVGDWGTQFGMLI  L+D + + L +     I+DL  
Sbjct: 155 STIIGDSISRIFELRGYEVLRLNHVGDWGTQFGMLITQLKDLYSNDLEEIGKIKISDLVE 214

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYKESKKRFD +  F+KR+ + VV LQ  D    KAW+++CD SR++F +IY  L + + 
Sbjct: 215 FYKESKKRFDNESEFQKRSREEVVKLQSGDIKSIKAWKLLCDQSRKEFDEIYKNLKIKIE 274

Query: 683 ERGESFYQKHMEQLVPYL---------------------EKKGN---LSLTKKLG----- 713
           ERGESFY   ++ ++  L                      K+G    L + KK G     
Sbjct: 275 ERGESFYNPFLKSVIDDLNLEKILVEDQGAKCVFLDGMTNKEGKPLPLIIQKKDGGFNYA 334

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 I+YVTD GQ  HF  + + AKKA  + P   ++D V F
Sbjct: 335 TTDLAAIRYRFNKPPNGDDASRIIYVTDHGQANHFAGVFQVAKKAKWI-PENCQVDHVPF 393

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQA 807
           G+V G D KK KTR G T++L +LL+E +RR+    L +L+D++R+   T   ++   + 
Sbjct: 394 GLVQGIDGKKLKTREGKTIRLKDLLNEAVRRAKEDLLKRLEDEDRYE--TEEFIANTSRI 451

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           +  G +KYADLS NR  +Y FSFDKML   GNTA YLLY   RI  I R
Sbjct: 452 IGLGAVKYADLSQNRITNYQFSFDKMLSLNGNTAPYLLYTLVRILGIKR 500



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 107/188 (56%), Gaps = 15/188 (7%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            L +L+D++R+   T   ++   + +  G +KYADLS NR  +Y FSFDKML   GNTA Y
Sbjct: 430  LKRLEDEDRYE--TEEFIANTSRIIGLGAVKYADLSQNRITNYQFSFDKMLSLNGNTAPY 487

Query: 994  LLYAYTRIASIARTAGI--NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            LLY   RI  I R      +S+D +       V+ EH+ E+ L + LL+ ++V++ + +D
Sbjct: 488  LLYTLVRILGIKRKNNFVYDSKDFQY------VNYEHKSEWKLIRKLLKFDEVIISIEKD 541

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LC YL+++   F+ FYD    ++++     K +   RL L + TAK +K   +IL
Sbjct: 542  LMPNRLCNYLFELCQTFNRFYDQVPILKEE-----KNIKISRLNLCDLTAKTLKLSLEIL 596

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 597  GIETLERM 604



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 16/114 (14%)

Query: 46  HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
            +FGD+QCN  ++L KI+     KKNP DI+    ++    L  N  ++K+   +E A P
Sbjct: 43  EEFGDYQCNVCLSLSKIY-----KKNPRDISNDFINL----LNKNKRISKLCKSLEIAGP 93

Query: 106 GFVNVFLS-RVYAGEQMKDIIVNGVQPPTLNKKL------RVLVDFSSPNIARK 152
           GF+N+ L   V   E   +I  N    P + K L      +V+VDFSSPNIA++
Sbjct: 94  GFINIKLKDEVLINEIKSNIQCNRAGIPLIRKDLESGLSNKVIVDFSSPNIAKE 147


>gi|440680763|ref|YP_007155558.1| arginyl-tRNA synthetase [Anabaena cylindrica PCC 7122]
 gi|428677882|gb|AFZ56648.1| arginyl-tRNA synthetase [Anabaena cylindrica PCC 7122]
          Length = 585

 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 150/327 (45%), Positives = 206/327 (62%), Gaps = 25/327 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGDFQ N A++L K    +          ++IAS +  +L     ++ + +  E+A PG
Sbjct: 38  KFGDFQANVALSLSKKLGMQ---------PRAIASAIVEKL----DISDICEPPEIAGPG 84

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L   Y   Q+  I  +   GV  P      + +VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85  FINLKLQTSYLEAQLNAIKADPRLGV--PKAKNPQKEIVDFSSPNIAKEMHVGHLRSTII 142

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKE 417
           GD I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  P  LT +    I DL  FY++
Sbjct: 143 GDCIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVSPAALTTADALDIGDLVNFYRQ 202

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
           +K+RFD D  F++ A Q VV LQ    D   AW+++C+ SR++FQ IYD LNV L ERGE
Sbjct: 203 AKQRFDADADFQETARQEVVRLQAGAEDTLHAWKLLCEQSRKEFQIIYDLLNVKLIERGE 262

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDL 532
           SFY   +  +V  LE  GLL  + G K ++       +   +P+ + KSDGG+ Y T+DL
Sbjct: 263 SFYNSFLSAVVEDLETSGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNYATTDL 322

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
           A++R RI++++A  I+YVTD GQ  HF
Sbjct: 323 ASLRYRIQKDQAKRIIYVTDSGQTNHF 349



 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 150/348 (43%), Positives = 197/348 (56%), Gaps = 52/348 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
           STIIGD I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++  P  LT +    I DL  
Sbjct: 139 STIIGDCIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVSPAALTTADALDIGDLVN 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+++K+RFD D  F++ A Q VV LQ    D   AW+++C+ SR++FQ IYD LNV L 
Sbjct: 199 FYRQAKQRFDADADFQETARQEVVRLQAGAEDTLHAWKLLCEQSRKEFQIIYDLLNVKLI 258

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   +  +V  LE  G L              T + G                 
Sbjct: 259 ERGESFYNSFLSAVVEDLETSGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNYA 318

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             I+YVTD GQ  HF    + AKKA  + P+   +  V FG+VL
Sbjct: 319 TTDLASLRYRIQKDQAKRIIYVTDSGQTNHFAQFMQVAKKANWI-PDDVELVHVPFGLVL 377

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           G+D KKFKTRSGDTV+L +LLDE + R+   L+ + +      TE  ++     V    +
Sbjct: 378 GDDGKKFKTRSGDTVRLRDLLDEAVSRTRADLEARLKEEGREETEEFINNVADVVGISAV 437

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  +YVFS+DKML  +GNTA Y++YAY R   I+R   I+
Sbjct: 438 KYADLSQNRTSNYVFSYDKMLALKGNTAPYMIYAYVRTQGISREGNID 485



 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 104/169 (61%), Gaps = 8/169 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++     V    +KYADLS NR  +YVFS+DKML  +GNTA Y++YAY R   I+R   I
Sbjct: 425  INNVADVVGISAVKYADLSQNRTSNYVFSYDKMLALKGNTAPYMIYAYVRTQGISREGNI 484

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            +  +L   A+   + L  + E  LAK LL++++V+  V +DL  + LC+Y+Y++S  F++
Sbjct: 485  DFGNLGADAK---IILREDTELTLAKHLLQLDEVISEVEQDLLPNRLCDYIYNLSDKFNK 541

Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FY+NC  ++ +     + + T RL+L + TAK +K   D+L I+ + +M
Sbjct: 542  FYENCPVLKSE-----EPIRTSRLMLCDLTAKTLKLGLDLLGIKVLERM 585



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 18/109 (16%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGDFQ N A++L K    +          ++IAS +  +L     ++ + +  E A PG
Sbjct: 38  KFGDFQANVALSLSKKLGMQ---------PRAIASAIVEKL----DISDICEPPEIAGPG 84

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   Y   Q+  I  +   GV  P      + +VDFSSPNIA++
Sbjct: 85  FINLKLQTSYLEAQLNAIKADPRLGV--PKAKNPQKEIVDFSSPNIAKE 131


>gi|72383390|ref|YP_292745.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|109895017|sp|Q46HI6.1|SYR_PROMT RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|72003240|gb|AAZ59042.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
          Length = 607

 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 159/384 (41%), Positives = 234/384 (60%), Gaps = 40/384 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNE---KYVHKFGDFQCNDAMALCKIF 259
           + +   L +    A    FP+     KT+S+ + +        +FGDFQ N A++L K  
Sbjct: 2   LEISARLEEALNRAFIKVFPQEDRSSKTSSILTGSNLVPASKPEFGDFQINCALSLAKEI 61

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNV------FLSRVYA 313
           K     + P +IAQ IA+    +L  +    ++ +   +A PGF+N+       +S ++ 
Sbjct: 62  K-----QPPREIAQKIAN----QLQKDNDFVRMCNPPRIAGPGFINLSINSKTLISEIHV 112

Query: 314 -------GEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRL 366
                  G  +K    + ++    N   RV++DFSSPNIAKEMHVGHLRSTIIGD+++R+
Sbjct: 113 RLNDKRLGVPLKKFSTDKIEEGKSNN--RVILDFSSPNIAKEMHVGHLRSTIIGDSLARI 170

Query: 367 LEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKS-PPIADLQAFYKESKKRFDE 424
           LE+ G++V+RLNHVGDWGTQFGMLI HL++  P+ L TK    I+DL  FY+++KKRFDE
Sbjct: 171 LEFRGYEVLRLNHVGDWGTQFGMLITHLKEVVPEVLHTKDVVEISDLVNFYRQAKKRFDE 230

Query: 425 DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHM 484
           D+IF+ ++   VV LQ  D +   AW+++C+ SR++FQKIYDRL++ LTERGESFY K +
Sbjct: 231 DQIFQNKSRSEVVNLQAGDKESLIAWQLLCNQSRKEFQKIYDRLDIKLTERGESFYNKFL 290

Query: 485 EQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI 539
             ++  L+ K LL  D G + ++     G++    P+ I KSDGGF Y T+DLAAI+ R+
Sbjct: 291 VDVINDLKNKKLLINDQGAQCIFLDGLVGKNGKPQPIIIQKSDGGFNYATTDLAAIKYRL 350

Query: 540 ----EEEKADWIVYVTDLGQGVHF 559
                 + A  ++YVTD GQ  HF
Sbjct: 351 TIPPHGDGACRLIYVTDAGQASHF 374



 Score =  260 bits (664), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 157/381 (41%), Positives = 222/381 (58%), Gaps = 61/381 (16%)

Query: 538 RIEEEKADWIVYV----TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
           +IEE K++  V +     ++ + +H   L  STIIGD+++R+LE+ G++V+RLNHVGDWG
Sbjct: 130 KIEEGKSNNRVILDFSSPNIAKEMHVGHLR-STIIGDSLARILEFRGYEVLRLNHVGDWG 188

Query: 594 TQFGMLIAHLQDKFPDYL-TKSP-PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 651
           TQFGMLI HL++  P+ L TK    I+DL  FY+++KKRFDED+IF+ ++   VV LQ  
Sbjct: 189 TQFGMLITHLKEVVPEVLHTKDVVEISDLVNFYRQAKKRFDEDQIFQNKSRSEVVNLQAG 248

Query: 652 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNL----- 706
           D +   AW+++C+ SR++FQKIYDRL++ LTERGESFY K +  ++  L+ K  L     
Sbjct: 249 DKESLIAWQLLCNQSRKEFQKIYDRLDIKLTERGESFYNKFLVDVINDLKNKKLLINDQG 308

Query: 707 -------SLTKKLG---------------------------------------IVYVTDL 720
                   L  K G                                       ++YVTD 
Sbjct: 309 AQCIFLDGLVGKNGKPQPIIIQKSDGGFNYATTDLAAIKYRLTIPPHGDGACRLIYVTDA 368

Query: 721 GQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL 780
           GQ  HF  + + AK A  + P   +++ V FG+V GED KK KTRSG+T++L +LLDE +
Sbjct: 369 GQASHFSGVFQIAKLANWI-PTDCQIEHVPFGLVQGEDGKKLKTRSGETIRLVDLLDEAI 427

Query: 781 RRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 838
           +R+ + LK++      +  E  + +    V    IKYADLS NR  +Y FSFDKML  +G
Sbjct: 428 QRAKNDLKNRLNTERRSENENFIDKVSTTVGIASIKYADLSQNRISNYQFSFDKMLSLQG 487

Query: 839 NTAVYLLYAYTRIASIARTAG 859
           NTA YLLYA  RIA I+R  G
Sbjct: 488 NTAPYLLYALVRIAGISRKGG 508



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 13/193 (6%)

Query: 929  GLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
             ++R+ + LK++      +  E  + +    V    IKYADLS NR  +Y FSFDKML  
Sbjct: 426  AIQRAKNDLKNRLNTERRSENENFIDKVSTTVGIASIKYADLSQNRISNYQFSFDKMLSL 485

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
            +GNTA YLLYA  RIA I+R  G    DL V++ +  +     +E+ L + LL+++ ++ 
Sbjct: 486  QGNTAPYLLYALVRIAGISRKGG----DLNVSSHN--IQFNESQEWELIRKLLQLDYIIA 539

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             V ++L  + LC YL+++S  F+ FYD    ++     +       RL+L   TA  +K 
Sbjct: 540  EVEKELLPNRLCGYLFELSQTFNRFYDQVPILKASEPSR-----ASRLILCSITADTLKL 594

Query: 1107 CFDILNIRTVHKM 1119
               +L I T+ +M
Sbjct: 595  GMSLLGIPTLERM 607



 Score = 47.8 bits (112), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 29/162 (17%)

Query: 9   MSVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNE---KYVHKFGDFQCNDAMALCKIF 63
           + +   L +    A    FP+     KT+S+ + +        +FGDFQ N A++L K  
Sbjct: 2   LEISARLEEALNRAFIKVFPQEDRSSKTSSILTGSNLVPASKPEFGDFQINCALSLAKEI 61

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNV------FLSRVYA 117
           K     + P +IAQ IA+    +L  +    ++ +    A PGF+N+       +S ++ 
Sbjct: 62  K-----QPPREIAQKIAN----QLQKDNDFVRMCNPPRIAGPGFINLSINSKTLISEIHV 112

Query: 118 -------GEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
                  G  +K    + ++    N   RV++DFSSPNIA++
Sbjct: 113 RLNDKRLGVPLKKFSTDKIEEGKSNN--RVILDFSSPNIAKE 152


>gi|399217836|emb|CCF74723.1| unnamed protein product [Babesia microti strain RI]
          Length = 576

 Score =  268 bits (686), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 147/394 (37%), Positives = 243/394 (61%), Gaps = 24/394 (6%)

Query: 207 VRDYLSDVFTHAVQVAFPELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           +++++ +VF+ A+  AFP +  + + +++  N      FGD+Q N AM + K  KD+ + 
Sbjct: 4   LQNHIKEVFSKAIAKAFPTIAYEHSPNISKANPS----FGDYQWNGAMDIFKQCKDELKL 59

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
           ++   + + ++  ++ ++       +VI   +    GFV + LS  +  E++K +I NGV
Sbjct: 60  ESVSQVTELVSKHLSRDM-----FEEVIPAKDANNLGFVTMKLSSKWVSEELKTLIRNGV 114

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
           +    N   ++LVDFSSPNIAK+MHVGHLRSTI+G++I R+ E+LG++V+R+NH+GDWGT
Sbjct: 115 KIEWKNDTYKILVDFSSPNIAKDMHVGHLRSTILGESICRVFEFLGYNVLRINHIGDWGT 174

Query: 386 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445
            FGM I +L+ + P+Y+   P I+DL +FYK++++  D DE FKK A   VV LQ  +  
Sbjct: 175 NFGMYIEYLKREHPNYIENFPAISDLTSFYKKARQLMDTDEDFKKCARANVVKLQEREKV 234

Query: 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
             KAWE+IC++S+ + +K+YD L++TL + GES+Y   +  ++  L  KG+ +   G   
Sbjct: 235 SVKAWEIICEISKAEIKKLYDILDITLEDYGESYYVDMIPGVIDELTAKGICKESSGAMC 294

Query: 506 MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEES 565
           ++  +    P+ + KSDGG+ YD++D+A IR RI       ++YVTD GQ  HF LL E+
Sbjct: 295 VF-TNIDKTPLILRKSDGGYGYDSTDMACIRHRIITLGCKRLIYVTDSGQRSHFDLLFEA 353

Query: 566 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 599
                  +R+  +   D+V L+HVG     FG++
Sbjct: 354 -------ARIAGWATDDIV-LDHVG-----FGLI 374



 Score =  236 bits (601), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 131/337 (38%), Positives = 195/337 (57%), Gaps = 45/337 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STI+G++I R+ E+LG++V+R+NH+GDWGT FGM I +L+ + P+Y+   P I+DL +FY
Sbjct: 145 STILGESICRVFEFLGYNVLRINHIGDWGTNFGMYIEYLKREHPNYIENFPAISDLTSFY 204

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++++  D DE FKK A   VV LQ  +    KAWE+IC++S+ + +K+YD L++TL + 
Sbjct: 205 KKARQLMDTDEDFKKCARANVVKLQEREKVSVKAWEIICEISKAEIKKLYDILDITLEDY 264

Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
           GES+Y   +  ++  L  KG                   L L K  G             
Sbjct: 265 GESYYVDMIPGVIDELTAKGICKESSGAMCVFTNIDKTPLILRKSDGGYGYDSTDMACIR 324

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++YVTD GQ  HF LL E A+ AG    +   +D VGFG++  ED KKFK
Sbjct: 325 HRIITLGCKRLIYVTDSGQRSHFDLLFEAARIAG-WATDDIVLDHVGFGLIQNEDGKKFK 383

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           +RSG+ V+L  L+DE + RS  +LK +  H +     +  A + +    I+Y DL  N N
Sbjct: 384 SRSGEPVRLMSLIDEAIERSKTELKMRGAHDD---AYIKYASKVLGCASIRYFDLKQNYN 440

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            +Y FS+DKML+ +GNTA+Y+LY Y RI SI + + +
Sbjct: 441 TNYKFSYDKMLNPKGNTAIYILYGYARICSIFKKSTL 477



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 13/196 (6%)

Query: 924  SLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            SL    + RS  +LK +  H +     +  A + +    I+Y DL  N N +Y FS+DKM
Sbjct: 394  SLIDEAIERSKTELKMRGAHDD---AYIKYASKVLGCASIRYFDLKQNYNTNYKFSYDKM 450

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            L+ +GNTA+Y+LY Y RI SI + + +   ++        ++L H KE  L K LL   D
Sbjct: 451  LNPKGNTAIYILYGYARICSIFKKSTL---EVDFMNDCDKINLVHPKELTLGKHLLYFPD 507

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
            V+   T+DL +  + +Y Y+++  F+ FY+ C  +  D E         RLLL +AT  +
Sbjct: 508  VISFTTQDLLISRIADYTYNLTEIFTSFYNECKVVGGDEE-------VSRLLLCKATKSI 560

Query: 1104 MKKCFDILNIRTVHKM 1119
            +  C  +L I  + K+
Sbjct: 561  LDMCLYMLGITPLEKL 576



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 81/142 (57%), Gaps = 10/142 (7%)

Query: 11  VRDYLSDVFTHAVQVAFPELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           +++++ +VF+ A+  AFP +  + + +++  N      FGD+Q N AM + K  KD+ + 
Sbjct: 4   LQNHIKEVFSKAIAKAFPTIAYEHSPNISKANPS----FGDYQWNGAMDIFKQCKDELKL 59

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
           ++   + + ++  ++ ++       +VI   +A   GFV + LS  +  E++K +I NGV
Sbjct: 60  ESVSQVTELVSKHLSRDM-----FEEVIPAKDANNLGFVTMKLSSKWVSEELKTLIRNGV 114

Query: 130 QPPTLNKKLRVLVDFSSPNIAR 151
           +    N   ++LVDFSSPNIA+
Sbjct: 115 KIEWKNDTYKILVDFSSPNIAK 136


>gi|253742171|gb|EES99018.1| Arginyl-tRNA synthetase [Giardia intestinalis ATCC 50581]
          Length = 621

 Score =  268 bits (685), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 150/340 (44%), Positives = 209/340 (61%), Gaps = 24/340 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSEL-------ATNPSLAKVIDK 295
           K+G +Q N  M + KI KD    + P + A+ ++ ++T E+              K I+ 
Sbjct: 49  KYGHYQLNSTMGIAKIIKDLHYTELPSNPAE-LSGLITQEILRVQDEYTKVKGCPKPIEA 107

Query: 296 IEVAKPGFVNVFLSRVYAGEQIKDIIV-----NGVQPPTLNKKLRVLVDFSSPNIAKEMH 350
           + +A   F+N+ L+  Y   +  DI +     +  +PP L KK R+ VDFSSPN+AK MH
Sbjct: 108 VNIAG-CFINLMLTPTYLLSKCFDIYMAVPFGSLPKPPVLPKK-RIAVDFSSPNVAKSMH 165

Query: 351 VGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP---- 406
           VGHLRSTIIGD+ISRL EY+G+DV R+NHVGDWGTQFGMLI +L D  P+    +     
Sbjct: 166 VGHLRSTIIGDSISRLYEYVGYDVHRINHVGDWGTQFGMLITYLTDMHPEIADAAAHCRR 225

Query: 407 ----PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQ 462
               PI +L AFYK++K+RFD D  F+KRAY+ VV LQ  + +    W  IC++SR +FQ
Sbjct: 226 VTMLPIDNLVAFYKKAKERFDTDADFQKRAYETVVKLQHLNLEEFYLWHKICEISRHEFQ 285

Query: 463 KIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSD 522
           +IYDRL++ + E GES+Y+  +   V  L++  L +L D   ++  E     P+ IVKSD
Sbjct: 286 RIYDRLDIKIDEFGESYYKFKLGTTVARLKRLHLTQLSDKATVIPVEGM-DYPLIIVKSD 344

Query: 523 GGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           GGFTYDT+D+AAI  R +  +AD  VYV D GQ  HF L+
Sbjct: 345 GGFTYDTTDMAAIYHRTQVLRADKCVYVVDAGQSSHFELV 384



 Score =  266 bits (681), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 150/349 (42%), Positives = 205/349 (58%), Gaps = 51/349 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--------P 616
           STIIGD+ISRL EY+G+DV R+NHVGDWGTQFGMLI +L D  P+    +         P
Sbjct: 171 STIIGDSISRLYEYVGYDVHRINHVGDWGTQFGMLITYLTDMHPEIADAAAHCRRVTMLP 230

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           I +L AFYK++K+RFD D  F+KRAY+ VV LQ  + +    W  IC++SR +FQ+IYDR
Sbjct: 231 IDNLVAFYKKAKERFDTDADFQKRAYETVVKLQHLNLEEFYLWHKICEISRHEFQRIYDR 290

Query: 677 LNVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGI---------------------- 714
           L++ + E GES+Y+  +   V  L++     L+ K  +                      
Sbjct: 291 LDIKIDEFGESYYKFKLGTTVARLKRLHLTQLSDKATVIPVEGMDYPLIIVKSDGGFTYD 350

Query: 715 -------------------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                              VYV D GQ  HF L+   A+KAG +   K +   V FGVVL
Sbjct: 351 TTDMAAIYHRTQVLRADKCVYVVDAGQSSHFELVFGAAEKAGWI--TKGQAVHVPFGVVL 408

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           G D K+ KTR+G+TVKL +LLDE +  S   L+++NR  E +  E+ +  +AV YG +KY
Sbjct: 409 GSDGKRLKTRAGETVKLEDLLDEAVAESTRLLEERNRDQEFSQEEVRQIVEAVGYGAVKY 468

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           ADLS +R  DY +   +ML+ +GNTA YLLY++TRI+SI R AGIN E+
Sbjct: 469 ADLSSHRIKDYKYDPKRMLNLKGNTAAYLLYSFTRISSICRKAGINREE 517



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 112/183 (61%), Gaps = 1/183 (0%)

Query: 937  LKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLY 996
            L+++NR  E +  E+ +  +AV YG +KYADLS +R  DY +   +ML+ +GNTA YLLY
Sbjct: 440  LEERNRDQEFSQEEVRQIVEAVGYGAVKYADLSSHRIKDYKYDPKRMLNLKGNTAAYLLY 499

Query: 997  AYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHH 1056
            ++TRI+SI R AGIN E+L   +    +S+    E  L   LL+++D ++    DLC H 
Sbjct: 500  SFTRISSICRKAGINREELYTTSLPKDLSIGDPSEINLLVALLKVHDTILFTLDDLCPHR 559

Query: 1057 LCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTV 1116
            +C+++Y +++A+++FY+ C  IE    G     +  RL L E T + ++  F +L IR +
Sbjct: 560  ICDWVYSVASAYTDFYEKCRVIETSESGD-TVCNKSRLALCEMTRQSLRLAFHLLGIREI 618

Query: 1117 HKM 1119
             +M
Sbjct: 619  DRM 621



 Score = 48.5 bits (114), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 13/116 (11%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSE-LATNPSLAKV---IDKIEA 102
           K+G +Q N  M + KI KD    + P + A+ ++ ++T E L       KV      IEA
Sbjct: 49  KYGHYQLNSTMGIAKIIKDLHYTELPSNPAE-LSGLITQEILRVQDEYTKVKGCPKPIEA 107

Query: 103 AKPG--FVNVFLSRVYAGEQMKDIIV-----NGVQPPTLNKKLRVLVDFSSPNIAR 151
                 F+N+ L+  Y   +  DI +     +  +PP L KK R+ VDFSSPN+A+
Sbjct: 108 VNIAGCFINLMLTPTYLLSKCFDIYMAVPFGSLPKPPVLPKK-RIAVDFSSPNVAK 162


>gi|159116602|ref|XP_001708522.1| Arginyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157436634|gb|EDO80848.1| Arginyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 621

 Score =  268 bits (684), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/349 (42%), Positives = 204/349 (58%), Gaps = 51/349 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--------P 616
           STIIGD+I RL EY+G+DV R+NHVGDWGTQFGMLI HL D  P+    +         P
Sbjct: 171 STIIGDSICRLYEYVGYDVHRINHVGDWGTQFGMLITHLTDMHPEIADAAAHCRRITMLP 230

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           I +L AFYK +K+RFD D  F+KRAY+ VV LQR +      W  ICD+SR +FQ+IYDR
Sbjct: 231 IDNLVAFYKAAKERFDNDPAFQKRAYEAVVKLQRLNLAEFYLWCKICDISRHEFQRIYDR 290

Query: 677 LNVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGI---------------------- 714
           L++ + E GES Y+  +   V  L++     ++ K  +                      
Sbjct: 291 LDIKIDEFGESSYKFKLGTTVARLKRLHLTQMSDKATVIPIEGMDYPLIIVKSDGGFTYD 350

Query: 715 -------------------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                              VYV D GQ  HF L+ + A+KAG +   K +   V FGVVL
Sbjct: 351 TTDMAAIYHRTQVLHADKCVYVVDAGQSSHFDLVFKAAEKAGWI--TKDQAVHVPFGVVL 408

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           G D K+ KTR+G+TVKL +LLDE +  S+  L+++NR  E +  E+ +  +AV YG +KY
Sbjct: 409 GSDGKRLKTRAGETVKLEDLLDEAVTESMRLLEERNRDQEFSQEEMRQVAEAVGYGAVKY 468

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           ADLS +R  DY +   +ML+ +GNTA YLLY++TRI+SI R AGI+ E+
Sbjct: 469 ADLSSHRIKDYKYDPKRMLNLKGNTAAYLLYSFTRISSICRKAGIDREE 517



 Score =  266 bits (680), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 151/339 (44%), Positives = 202/339 (59%), Gaps = 22/339 (6%)

Query: 243 KFGDFQCNDAMALCKIFKD---KGEKKNPFDIAQSIASV---VTSELATNPSLAKVIDKI 296
           K+G +Q N  M + K+ KD        NP +++         V  + A      K I+ +
Sbjct: 49  KYGHYQFNSTMGIAKLIKDLHYDALPSNPAELSGLFTQAMLCVQDKYAEEKGCPKPIEAV 108

Query: 297 EVAKPGFVNVFLSRVYAGEQIKDIIV-----NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
            +A   F+N+ L+  Y   +  DI +        +PPTL +K RV+VDFSSPN+AK MHV
Sbjct: 109 NIAG-CFINIALTPAYLLSKCFDIYMAVPFGTLPKPPTLPRK-RVVVDFSSPNVAKSMHV 166

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP----- 406
           GHLRSTIIGD+I RL EY+G+DV R+NHVGDWGTQFGMLI HL D  P+    +      
Sbjct: 167 GHLRSTIIGDSICRLYEYVGYDVHRINHVGDWGTQFGMLITHLTDMHPEIADAAAHCRRI 226

Query: 407 ---PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 463
              PI +L AFYK +K+RFD D  F+KRAY+ VV LQR +      W  ICD+SR +FQ+
Sbjct: 227 TMLPIDNLVAFYKAAKERFDNDPAFQKRAYEAVVKLQRLNLAEFYLWCKICDISRHEFQR 286

Query: 464 IYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDG 523
           IYDRL++ + E GES Y+  +   V  L++  L ++ D   ++  E     P+ IVKSDG
Sbjct: 287 IYDRLDIKIDEFGESSYKFKLGTTVARLKRLHLTQMSDKATVIPIEGM-DYPLIIVKSDG 345

Query: 524 GFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           GFTYDT+D+AAI  R +   AD  VYV D GQ  HF L+
Sbjct: 346 GFTYDTTDMAAIYHRTQVLHADKCVYVVDAGQSSHFDLV 384



 Score =  143 bits (360), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 121/205 (59%), Gaps = 2/205 (0%)

Query: 916  RGQEEVQ-DSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNL 974
            R  E V+ + L    +  S+  L+++NR  E +  E+ +  +AV YG +KYADLS +R  
Sbjct: 418  RAGETVKLEDLLDEAVTESMRLLEERNRDQEFSQEEMRQVAEAVGYGAVKYADLSSHRIK 477

Query: 975  DYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFAL 1034
            DY +   +ML+ +GNTA YLLY++TRI+SI R AGI+ E+L  +     +S+    E  L
Sbjct: 478  DYKYDPKRMLNLKGNTAAYLLYSFTRISSICRKAGIDREELYTSDTLRNLSITEPSEINL 537

Query: 1035 AKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRL 1094
               LL++ D ++    DLC H +C+++Y +++A+++FY+ C  IE  A G     +  RL
Sbjct: 538  LVALLKVRDTILFTLEDLCPHRICDWVYSVASAYTDFYEKCRVIETSASGD-SVCNKSRL 596

Query: 1095 LLAEATAKVMKKCFDILNIRTVHKM 1119
            +L E   + ++  F +L IR + +M
Sbjct: 597  VLCEMARQSLRLAFHLLGIREIDRM 621



 Score = 47.8 bits (112), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 13/116 (11%)

Query: 47  KFGDFQCNDAMALCKIFKD---KGEKKNPFDIAQSIASV---VTSELATNPSLAKVIDKI 100
           K+G +Q N  M + K+ KD        NP +++         V  + A      K I+ +
Sbjct: 49  KYGHYQFNSTMGIAKLIKDLHYDALPSNPAELSGLFTQAMLCVQDKYAEEKGCPKPIEAV 108

Query: 101 EAAKPGFVNVFLSRVYAGEQMKDIIV-----NGVQPPTLNKKLRVLVDFSSPNIAR 151
             A   F+N+ L+  Y   +  DI +        +PPTL +K RV+VDFSSPN+A+
Sbjct: 109 NIAG-CFINIALTPAYLLSKCFDIYMAVPFGTLPKPPTLPRK-RVVVDFSSPNVAK 162


>gi|357501013|ref|XP_003620795.1| Arginyl-tRNA synthetase [Medicago truncatula]
 gi|355495810|gb|AES77013.1| Arginyl-tRNA synthetase [Medicago truncatula]
          Length = 728

 Score =  267 bits (682), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 152/346 (43%), Positives = 204/346 (58%), Gaps = 46/346 (13%)

Query: 565 STIIGDTISRLLEYLGHDVV-RLNHVGDWGTQFGMLIAHLQDKFPDYLTKS-PPIADLQA 622
           STIIGDT++R+LE+   ++V R NHVGDWGTQFGMLI +L +KFP+    S   I DLQA
Sbjct: 239 STIIGDTLARMLEFSRVELVTRRNHVGDWGTQFGMLIEYLFEKFPNQEDVSETAIGDLQA 298

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK SK RFD+D  FK RA Q VV LQ  D  Y+KAW+ ICD+SR +F K+Y RL V L 
Sbjct: 299 FYKASKVRFDDDPEFKLRAQQAVVLLQSGDTRYRKAWQQICDISRAEFDKVYQRLGVQLE 358

Query: 683 ERGESFYQKHMEQLVPYLEKKG-------------------------------------- 704
           E GESFY  ++  ++  L+K G                                      
Sbjct: 359 EMGESFYNPYIPGVIEKLDKLGLVEDSDGARVIYVEGVNIPIIAVKRDGGYNYFSTDLAS 418

Query: 705 ---NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKT---RMDFVGFGVVLGED 758
               L+  K   IVYVTD+GQ  HF +L +  ++AG L  N+    +   +GFG+VLG D
Sbjct: 419 LWYRLNKEKLEWIVYVTDIGQQQHFDMLYKAFRRAGWLPRNENAYPKCTHIGFGLVLGND 478

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADL 818
            K+F++RS + V+L +LLDE  RR    L +++   + +  E+    +A+ YG +KYADL
Sbjct: 479 GKRFRSRSSEVVRLVDLLDEAKRRCKTALLERDTTNDWSEEEIERTSEAIGYGAVKYADL 538

Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
             NR  +Y F FD+ML D+GNTAVYLLYA+ RI SI R +G + E+
Sbjct: 539 KINRLTNYKFDFDQMLSDKGNTAVYLLYAHARICSIIRKSGKDIEE 584



 Score =  255 bits (652), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 141/298 (47%), Positives = 195/298 (65%), Gaps = 15/298 (5%)

Query: 335 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV-RLNHVGDWGTQFGMLIAH 393
           R +VDFSSPNIAKEMHVGHLRSTIIGDT++R+LE+   ++V R NHVGDWGTQFGMLI +
Sbjct: 218 RAMVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSRVELVTRRNHVGDWGTQFGMLIEY 277

Query: 394 LQDKFPDYLTKS-PPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEM 452
           L +KFP+    S   I DLQAFYK SK RFD+D  FK RA Q VV LQ  D  Y+KAW+ 
Sbjct: 278 LFEKFPNQEDVSETAIGDLQAFYKASKVRFDDDPEFKLRAQQAVVLLQSGDTRYRKAWQQ 337

Query: 453 ICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRG 512
           ICD+SR +F K+Y RL V L E GESFY  ++  ++  L+K GL+E  DG ++++ E   
Sbjct: 338 ICDISRAEFDKVYQRLGVQLEEMGESFYNPYIPGVIEKLDKLGLVEDSDGARVIYVEG-V 396

Query: 513 SIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTI 572
           +IP+  VK DGG+ Y ++DLA++  R+ +EK +WIVYVTD+GQ  HF +L ++      +
Sbjct: 397 NIPIIAVKRDGGYNYFSTDLASLWYRLNKEKLEWIVYVTDIGQQQHFDMLYKAFRRAGWL 456

Query: 573 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            R      +   +  H+G     FG+++ +   +F    ++S  +  L     E+K+R
Sbjct: 457 PR----NENAYPKCTHIG-----FGLVLGNDGKRFR---SRSSEVVRLVDLLDEAKRR 502



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 4/146 (2%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            RR    L +++   + +  E+    +A+ YG +KYADL  NR  +Y F FD+ML D+GNT
Sbjct: 501  RRCKTALLERDTTNDWSEEEIERTSEAIGYGAVKYADLKINRLTNYKFDFDQMLSDKGNT 560

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            AVYLLYA+ RI SI R +G + E+++   ++  + L+HE E  L   +L+  +V      
Sbjct: 561  AVYLLYAHARICSIIRKSGKDIEEVK---KNGVIVLDHESERLLGLHILQFPEVFEEACS 617

Query: 1051 DLCLHHLCEYLYDISTAFS-EFYDNC 1075
            +L    LC+YLY ++  F+ +FY NC
Sbjct: 618  NLLPSVLCDYLYTLAEIFTKKFYSNC 643


>gi|33860747|ref|NP_892308.1| arginyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|39932084|sp|Q7V396.1|SYR_PROMP RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|33633689|emb|CAE18646.1| Arginyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 603

 Score =  266 bits (680), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 151/340 (44%), Positives = 207/340 (60%), Gaps = 26/340 (7%)

Query: 237 NEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKI 296
           N+    +FGD+QCN  + L KI+K      NP +IA  IA + T  L  N  ++ + + +
Sbjct: 38  NQASKEEFGDYQCNICLVLSKIYKS-----NPREIA--IAFIET--LKENKKISNLCENL 88

Query: 297 EVAKPGFVNVFLSRVYAGEQIKDII------VNGVQPPTLNKKLRVLVDFSSPNIAKEMH 350
           E+A PGF+N+ L      E IK  I      V       +  K +V+VDFSSPNIAKEMH
Sbjct: 89  EIAGPGFINIKLKNKVLIEAIKSNIKCPRAGVPLSHKNNIYSKKKVIVDFSSPNIAKEMH 148

Query: 351 VGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPI 408
           VGHLRSTIIGD+IS++ E+ G+ V+RLNH+GDWGTQFGMLI  L+D +   L +     I
Sbjct: 149 VGHLRSTIIGDSISKIFEFRGYIVLRLNHIGDWGTQFGMLITQLKDLYSSDLKEIDRIKI 208

Query: 409 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 468
           +DL  FYK SKKRFD +  F+KR+ + VV LQ  D    +AW+++C+ SR++F +IY  L
Sbjct: 209 SDLVEFYKASKKRFDNETEFQKRSREEVVQLQSGDKKSIEAWKLLCNQSRKEFDQIYKTL 268

Query: 469 NVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI-----MWGEDRGSIPMTIVKSDG 523
           N+ + ERGESFY   ++ ++  L  K +L  D G K      M  ++   +P+ I K DG
Sbjct: 269 NIKIKERGESFYNPFLKSIIEDLNYKKILIEDQGAKCVFLDGMTNKEGNPLPLIIQKKDG 328

Query: 524 GFTYDTSDLAAIRQRIEEE----KADWIVYVTDLGQGVHF 559
           GF Y T+DLAA+R R  +E     A  I+YVTD GQ  HF
Sbjct: 329 GFNYATTDLAALRYRFTKEPYGDNAARIIYVTDHGQSNHF 368



 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/356 (39%), Positives = 196/356 (55%), Gaps = 60/356 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQA 622
           STIIGD+IS++ E+ G+ V+RLNH+GDWGTQFGMLI  L+D +   L +     I+DL  
Sbjct: 154 STIIGDSISKIFEFRGYIVLRLNHIGDWGTQFGMLITQLKDLYSSDLKEIDRIKISDLVE 213

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK SKKRFD +  F+KR+ + VV LQ  D    +AW+++C+ SR++F +IY  LN+ + 
Sbjct: 214 FYKASKKRFDNETEFQKRSREEVVQLQSGDKKSIEAWKLLCNQSRKEFDQIYKTLNIKIK 273

Query: 683 ERGESFYQKHMEQLVPYL---------------------EKKGN---LSLTKKLG----- 713
           ERGESFY   ++ ++  L                      K+GN   L + KK G     
Sbjct: 274 ERGESFYNPFLKSIIEDLNYKKILIEDQGAKCVFLDGMTNKEGNPLPLIIQKKDGGFNYA 333

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 I+YVTD GQ  HF  + + AK+A  + P    ++ V F
Sbjct: 334 TTDLAALRYRFTKEPYGDNAARIIYVTDHGQSNHFAGVFQVAKRANWI-PKDCEVNHVPF 392

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQA 807
           G+V G D KK KTR GDT+KL +LL E ++R+    L +L++++R        +    + 
Sbjct: 393 GLVQGIDGKKLKTREGDTIKLKDLLSESVKRAKEDLLKRLENESRFE--NDDFVLNTSKV 450

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           +  G +KYADLS NR  +Y FSF+KML   GNTA YLLY   RI+ I R   +  E
Sbjct: 451 IGIGAVKYADLSQNRITNYQFSFEKMLSLNGNTAPYLLYTLVRISGINRKNNMTEE 506



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 9/166 (5%)

Query: 954  AQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 1013
              + +  G +KYADLS NR  +Y FSF+KML   GNTA YLLY   RI+ I R   +  E
Sbjct: 447  TSKVIGIGAVKYADLSQNRITNYQFSFEKMLSLNGNTAPYLLYTLVRISGINRKNNMTEE 506

Query: 1014 DLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYD 1073
             + + +    +S  H+ E+ L + LL+ ++V++ + +DL  + LC YL+++   F+ FYD
Sbjct: 507  AINLES----ISYSHDLEWKLIRKLLKFDEVIISIEKDLMPNRLCNYLFELCKTFNRFYD 562

Query: 1074 NCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
                ++ + + KI      RL L   T K +K   ++L I T+ +M
Sbjct: 563  QVPILKGEIDTKI-----SRLTLCALTEKTLKLSLELLGIETLERM 603



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 17/137 (12%)

Query: 41  NEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKI 100
           N+    +FGD+QCN  + L KI+K      NP +IA  IA + T  L  N  ++ + + +
Sbjct: 38  NQASKEEFGDYQCNICLVLSKIYKS-----NPREIA--IAFIET--LKENKKISNLCENL 88

Query: 101 EAAKPGFVNVFLSRVYAGEQMKDII------VNGVQPPTLNKKLRVLVDFSSPNIARKGG 154
           E A PGF+N+ L      E +K  I      V       +  K +V+VDFSSPNIA++  
Sbjct: 89  EIAGPGFINIKLKNKVLIEAIKSNIKCPRAGVPLSHKNNIYSKKKVIVDFSSPNIAKE-- 146

Query: 155 FLYPHLPSQIHDILISK 171
               HL S I    ISK
Sbjct: 147 MHVGHLRSTIIGDSISK 163


>gi|389593375|ref|XP_003721941.1| putative arginyl-tRNA synthetase [Leishmania major strain Friedlin]
 gi|321438443|emb|CBZ12199.1| putative arginyl-tRNA synthetase [Leishmania major strain Friedlin]
          Length = 692

 Score =  265 bits (677), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 131/280 (46%), Positives = 186/280 (66%), Gaps = 9/280 (3%)

Query: 229 KTASVASTNEKY--VHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATN 286
           KT  +  T E    V K  ++QCN+AM L K+     +++ P  ++     +V  EL  N
Sbjct: 24  KTFPLVPTQEPLITVGKVSEYQCNNAMGLVKVL---SQQQQPIKMS---PQMVGEELKKN 77

Query: 287 PSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIA 346
                +ID+ E    GF+NV + + +    +K+++  G++PP + KK RVLVDFS+PNIA
Sbjct: 78  LVDNDIIDEFEPTSKGFINVSIRKEWLARMVKEVLKQGIRPPVV-KKQRVLVDFSAPNIA 136

Query: 347 KEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP 406
           KEMHVGHLRSTIIG++ISRLLE+  HDV R+NH+GDWGT FGML+ +++  FPDY T  P
Sbjct: 137 KEMHVGHLRSTIIGESISRLLEFCQHDVARINHIGDWGTAFGMLVLYIKRNFPDYTTNPP 196

Query: 407 PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 466
            I+DL AFY+ +KK FDED+ FK++A   VV LQ  + D  +AW+ ICDVSR +F K+Y 
Sbjct: 197 DISDLTAFYRAAKKCFDEDQEFKEKARLEVVKLQALEEDSIQAWKYICDVSREEFSKVYT 256

Query: 467 RLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIM 506
           RL  T+ ERGESFY   + +++  LE+ G +E+ DG K++
Sbjct: 257 RLGATIEERGESFYNPLIPKVLGLLEEAGQIEVSDGAKLI 296



 Score =  169 bits (428), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 105/145 (72%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRLLE+  HDV R+NH+GDWGT FGML+ +++  FPDY T  P I+DL AFY
Sbjct: 146 STIIGESISRLLEFCQHDVARINHIGDWGTAFGMLVLYIKRNFPDYTTNPPDISDLTAFY 205

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK FDED+ FK++A   VV LQ  + D  +AW+ ICDVSR +F K+Y RL  T+ ER
Sbjct: 206 RAAKKCFDEDQEFKEKARLEVVKLQALEEDSIQAWKYICDVSREEFSKVYTRLGATIEER 265

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLT 709
           GESFY   + +++  LE+ G + ++
Sbjct: 266 GESFYNPLIPKVLGLLEEAGQIEVS 290



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 94/157 (59%), Gaps = 11/157 (7%)

Query: 714 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 773
           ++Y TDLGQ  HFR+  + AK  G +       D  GFG+V G D KK KTRSG+TVKL 
Sbjct: 446 VIYCTDLGQYEHFRMCLQTAKDMGWME--HATWDHAGFGLVTGADGKKIKTRSGETVKLK 503

Query: 774 ELLDEGLRRSLDKLKDKNR------HTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYV 827
           +L+DE + RSL  LK++        H+E    +LS     +  G IKY DL   R  DY 
Sbjct: 504 DLMDEAVERSLAILKEREAGERSQGHSEEVMQKLS---NIIGIGAIKYFDLKQTRTGDYA 560

Query: 828 FSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           FS+DKMLD  GNTAV+LLY Y RI SI R AGI  E+
Sbjct: 561 FSYDKMLDMSGNTAVFLLYQYARICSIQRKAGIADEE 597



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/197 (39%), Positives = 105/197 (53%), Gaps = 19/197 (9%)

Query: 929  GLRRSLDKLKDKNR------HTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDK 982
             + RSL  LK++        H+E    +LS     +  G IKY DL   R  DY FS+DK
Sbjct: 509  AVERSLAILKEREAGERSQGHSEEVMQKLS---NIIGIGAIKYFDLKQTRTGDYAFSYDK 565

Query: 983  MLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMN 1042
            MLD  GNTAV+LLY Y RI SI R AGI  E+L    + T +SLE  +E +LA   LR  
Sbjct: 566  MLDMSGNTAVFLLYQYARICSIQRKAGIADEEL---FKITDISLETPQEKSLALCALRFQ 622

Query: 1043 DVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAK 1102
             V++    DL  HHL ++ Y++ T FS F+ NC  ++         +   RL L E T  
Sbjct: 623  TVILKTVEDLFPHHLADFAYELMTNFSNFFQNCRVLD-------DPLQNSRLCLVELTRI 675

Query: 1103 VMKKCFDILNIRTVHKM 1119
             +KK  ++LNI T  ++
Sbjct: 676  TLKKTLELLNIETAERI 692



 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 9/122 (7%)

Query: 33  KTASVASTNEKY--VHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATN 90
           KT  +  T E    V K  ++QCN+AM L K+     +++ P  ++     +V  EL  N
Sbjct: 24  KTFPLVPTQEPLITVGKVSEYQCNNAMGLVKVL---SQQQQPIKMS---PQMVGEELKKN 77

Query: 91  PSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIA 150
                +ID+ E    GF+NV + + +    +K+++  G++PP + KK RVLVDFS+PNIA
Sbjct: 78  LVDNDIIDEFEPTSKGFINVSIRKEWLARMVKEVLKQGIRPPVV-KKQRVLVDFSAPNIA 136

Query: 151 RK 152
           ++
Sbjct: 137 KE 138



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 7/87 (8%)

Query: 482 KHMEQLVPYLEKKG---LLELDDGRKIMWGED----RGSIPMTIVKSDGGFTYDTSDLAA 534
           K M QL P  +K+     LE+ +   I+ G+     R S P+ +VKSDGG+TYDT+D+ A
Sbjct: 374 KLMAQLAPLYKKQLDPLFLEVFEAAGIVKGDSILVPRFSFPLMVVKSDGGYTYDTTDVTA 433

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRL 561
              R   EK + ++Y TDLGQ  HFR+
Sbjct: 434 TYHRFVIEKMNRVIYCTDLGQYEHFRM 460


>gi|145343622|ref|XP_001416415.1| arginyl-tRNA synthetase [Ostreococcus lucimarinus CCE9901]
 gi|144576640|gb|ABO94708.1| arginyl-tRNA synthetase [Ostreococcus lucimarinus CCE9901]
          Length = 600

 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 156/397 (39%), Positives = 225/397 (56%), Gaps = 35/397 (8%)

Query: 218 AVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK--KNPFDIAQSI 275
           +V+  FP+  DK   VA          GDFQ + AM +       GE   ++P D+A  I
Sbjct: 70  SVRERFPDY-DKPIDVAECANT---SLGDFQSSSAMQIFSALAKAGETSFRSPRDVADEI 125

Query: 276 ASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLR 335
            + ++          ++ D I +A PGF+N  LS  Y   ++     +    PT+  K  
Sbjct: 126 VAGISER--------EMFDSITIAGPGFINFRLSDNYIRSELFRETKSAELGPTI--KRH 175

Query: 336 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQ 395
           VLVDFSSPNIAKEMHVGHLRSTIIGDT+  + E+ G+   R+NHVGDWGTQFGMLI  ++
Sbjct: 176 VLVDFSSPNIAKEMHVGHLRSTIIGDTLCNVFEFCGYTTTRVNHVGDWGTQFGMLIQFMK 235

Query: 396 DKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICD 455
           +   + ++    ++DLQA YK++K++FD D+ FK ++   VV LQ +DP+    W  IC 
Sbjct: 236 E---NGISPDSSVSDLQACYKQAKQKFDVDDDFKAKSKDMVVKLQSYDPETAHMWRQICS 292

Query: 456 VSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIP 515
            SR +FQ IYDRL + + E+GESFY   +  ++  L+ K L+  D G   ++ E   + P
Sbjct: 293 ASRAEFQTIYDRLKIRIVEKGESFYNDMIPSVLDELQSKRLIVEDAGALCIFTESDDT-P 351

Query: 516 MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR-LLEESTIIGDTISR 574
           +   KSDGGF Y ++DLAA+R RI  EKAD I+YVTD GQ  HF+ + + +   G     
Sbjct: 352 VICRKSDGGFNYASTDLAAVRHRIMSEKADKIIYVTDQGQHKHFKAIFKTANEAG----- 406

Query: 575 LLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL 611
                G   V L HVG     FG+++   +++   +L
Sbjct: 407 ----WGDAQVALEHVG-----FGVVLDEAEERCFKFL 434



 Score =  203 bits (517), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/331 (35%), Positives = 173/331 (52%), Gaps = 68/331 (20%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDT+  + E+ G+   R+NHVGDWGTQFGMLI  +++   + ++    ++DLQA Y
Sbjct: 196 STIIGDTLCNVFEFCGYTTTRVNHVGDWGTQFGMLIQFMKE---NGISPDSSVSDLQACY 252

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K++K++FD D+ FK ++   VV LQ +DP+    W  IC  SR +FQ IYDRL + + E+
Sbjct: 253 KQAKQKFDVDDDFKAKSKDMVVKLQSYDPETAHMWRQICSASRAEFQTIYDRLKIRIVEK 312

Query: 685 GESFYQKHMEQLVPYLEKK-------GNLSL----------------------------- 708
           GESFY   +  ++  L+ K       G L +                             
Sbjct: 313 GESFYNDMIPSVLDELQSKRLIVEDAGALCIFTESDDTPVICRKSDGGFNYASTDLAAVR 372

Query: 709 -----TKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                 K   I+YVTD GQ  HF+ + + A +AG     +  ++ VGFGVV         
Sbjct: 373 HRIMSEKADKIIYVTDQGQHKHFKAIFKTANEAG-WGDAQVALEHVGFGVV--------- 422

Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
                       LDE   R    L++K   T LT  E+  A + +    +KYADL +NR 
Sbjct: 423 ------------LDEAEERCFKFLEEKG--TNLTTDEIKHASKVLGVSSVKYADLQNNRL 468

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
            +Y FSFD+MLD +GNTA+YL Y++ R+A+I
Sbjct: 469 TNYTFSFDRMLDLKGNTAMYLQYSHARVATI 499



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 20/209 (9%)

Query: 917  GQEEVQDSLRGYGLRRSLDKLKDK------NRHTELTPTELSEAQQAVAYGCIKYADLSH 970
            G  + Q +L   G    LD+ +++       + T LT  E+  A + +    +KYADL +
Sbjct: 406  GWGDAQVALEHVGFGVVLDEAEERCFKFLEEKGTNLTTDEIKHASKVLGVSSVKYADLQN 465

Query: 971  NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEK 1030
            NR  +Y FSFD+MLD +GNTA+YL Y++ R+A+I + +         A +    S+ HE+
Sbjct: 466  NRLTNYTFSFDRMLDLKGNTAMYLQYSHARVATILQKSSF-------AGRPDQFSISHEE 518

Query: 1031 EFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVH 1090
            E  LA  +++  D L+   +DL    LCEYLY + + F+ FY  C  I  D E       
Sbjct: 519  ERLLAIQIIKFQDALLTTLQDLAPSKLCEYLYTLCSTFNNFYAECKVIGGDNE------- 571

Query: 1091 TGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              R+ L E T   MK  F +L I  + ++
Sbjct: 572  ESRIYLCERTLYTMKLTFSLLGIEPLERL 600



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 16/133 (12%)

Query: 22  AVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK--KNPFDIAQSI 79
           +V+  FP+  DK   VA          GDFQ + AM +       GE   ++P D+A  I
Sbjct: 70  SVRERFPDY-DKPIDVAECANT---SLGDFQSSSAMQIFSALAKAGETSFRSPRDVADEI 125

Query: 80  ASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLR 139
            + ++          ++ D I  A PGF+N  LS  Y   ++     +    PT+  K  
Sbjct: 126 VAGISER--------EMFDSITIAGPGFINFRLSDNYIRSELFRETKSAELGPTI--KRH 175

Query: 140 VLVDFSSPNIARK 152
           VLVDFSSPNIA++
Sbjct: 176 VLVDFSSPNIAKE 188


>gi|398017578|ref|XP_003861976.1| arginyl-tRNA synthetase, putative [Leishmania donovani]
 gi|322500204|emb|CBZ35281.1| arginyl-tRNA synthetase, putative [Leishmania donovani]
          Length = 692

 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/264 (47%), Positives = 180/264 (68%), Gaps = 7/264 (2%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           K  ++QCN+AM L K+     +++ P  ++     +V  EL  N     +ID+ E    G
Sbjct: 40  KVSEYQCNNAMGLVKVL---SQQQQPIKMS---PQMVGEELKKNLVGNDIIDEFEPTPKG 93

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+NV + + +    +K+++  G++PP + K+ RVLVDFS+PNIAKEMHVGHLRSTIIG++
Sbjct: 94  FINVSIRKEWVARMVKEVLKQGIRPPVVTKQ-RVLVDFSAPNIAKEMHVGHLRSTIIGES 152

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           ISRLLE+  HDV R+NH+GDWGT FGMLI +++  FPDY T  P I+DL AFY+ +KK F
Sbjct: 153 ISRLLEFCQHDVARINHIGDWGTAFGMLILYIKRNFPDYTTNPPDISDLTAFYRAAKKCF 212

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQK 482
           DED+ FK++A   VV LQ  + D  +AW+ ICDVSR +F K+Y RL  T+ ERGESFY  
Sbjct: 213 DEDQEFKEKARLEVVKLQALEEDSIQAWKYICDVSREEFDKVYTRLGATIEERGESFYNP 272

Query: 483 HMEQLVPYLEKKGLLELDDGRKIM 506
            + +++  LE+ G +E+ DG K++
Sbjct: 273 LIPKVLDLLEEAGQIEVSDGAKLI 296



 Score =  169 bits (429), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 105/145 (72%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRLLE+  HDV R+NH+GDWGT FGMLI +++  FPDY T  P I+DL AFY
Sbjct: 146 STIIGESISRLLEFCQHDVARINHIGDWGTAFGMLILYIKRNFPDYTTNPPDISDLTAFY 205

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK FDED+ FK++A   VV LQ  + D  +AW+ ICDVSR +F K+Y RL  T+ ER
Sbjct: 206 RAAKKCFDEDQEFKEKARLEVVKLQALEEDSIQAWKYICDVSREEFDKVYTRLGATIEER 265

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLT 709
           GESFY   + +++  LE+ G + ++
Sbjct: 266 GESFYNPLIPKVLDLLEEAGQIEVS 290



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 93/154 (60%), Gaps = 5/154 (3%)

Query: 714 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 773
           ++Y TDLGQ  HFR+  + AK  G +       D  GFG+V G D KK KTRSG+TVKL 
Sbjct: 446 VIYCTDLGQYEHFRMCMQTAKDMGWME--HATWDHAGFGLVTGADGKKIKTRSGETVKLK 503

Query: 774 ELLDEGLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830
           +L+DE + RSL  LK++    R    +  E+ +    +  G IKY DL   R  DY FS+
Sbjct: 504 DLMDEAVERSLAILKEREAGERSQGHSEEEMQKLSNIIGIGAIKYFDLKQTRTGDYAFSY 563

Query: 831 DKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           DKMLD  GNTAV+LLY Y RI SI R AGI  E+
Sbjct: 564 DKMLDMSGNTAVFLLYQYARICSIKRKAGIADEE 597



 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 104/194 (53%), Gaps = 13/194 (6%)

Query: 929  GLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
             + RSL  LK++    R    +  E+ +    +  G IKY DL   R  DY FS+DKMLD
Sbjct: 509  AVERSLAILKEREAGERSQGHSEEEMQKLSNIIGIGAIKYFDLKQTRTGDYAFSYDKMLD 568

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTAV+LLY Y RI SI R AGI  E+L    + T +SLE  +E +LA   LR   V+
Sbjct: 569  MSGNTAVFLLYQYARICSIKRKAGIADEEL---LEITDISLETPQEKSLALCALRFQTVI 625

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
            +    DL  HHL ++ Y++ T FS F+ NC  ++         +   RL L E T   +K
Sbjct: 626  LKTVEDLFPHHLADFAYELMTNFSNFFQNCRVLD-------DPLQNSRLCLVELTRITLK 678

Query: 1106 KCFDILNIRTVHKM 1119
            K  ++LNI T  ++
Sbjct: 679  KTLELLNIETAERI 692



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 63/106 (59%), Gaps = 7/106 (6%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           K  ++QCN+AM L K+     +++ P  ++     +V  EL  N     +ID+ E    G
Sbjct: 40  KVSEYQCNNAMGLVKVL---SQQQQPIKMS---PQMVGEELKKNLVGNDIIDEFEPTPKG 93

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+NV + + +    +K+++  G++PP + K+ RVLVDFS+PNIA++
Sbjct: 94  FINVSIRKEWVARMVKEVLKQGIRPPVVTKQ-RVLVDFSAPNIAKE 138



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 7/87 (8%)

Query: 482 KHMEQLVPYLEKKG---LLELDDGRKIMWGED----RGSIPMTIVKSDGGFTYDTSDLAA 534
           K M QL P  +K+     LE+ +   I+ G+     R S P+ +VKSDGG+TYDT+D+ A
Sbjct: 374 KLMAQLAPLYKKQLDPLFLEVFEAAGIVKGDSILVPRFSFPLMVVKSDGGYTYDTTDVTA 433

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRL 561
              R   EK + ++Y TDLGQ  HFR+
Sbjct: 434 TYHRFVIEKMNRVIYCTDLGQYEHFRM 460


>gi|78778575|ref|YP_396687.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
 gi|109895016|sp|Q31CZ4.1|SYR_PROM9 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|78712074|gb|ABB49251.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 604

 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/336 (44%), Positives = 205/336 (61%), Gaps = 27/336 (8%)

Query: 242 HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
            +FGD+QCN  + L KI+K     K P +I++    +    L  N S++K+   +E+A P
Sbjct: 43  EEFGDYQCNVCLCLSKIYK-----KKPREISEDFVYL----LNKNKSISKLCKSLEIAGP 93

Query: 302 GFVNVFLS-RVYAGEQIKDIIVNGVQPPTLNKKL------RVLVDFSSPNIAKEMHVGHL 354
           GF+N+ L   V   E   +I       P + K L      +V+VDFSSPNIAKEMHVGHL
Sbjct: 94  GFINIKLKDEVLINEIKSNIQCPRAGIPLIKKDLDSGLSNKVIVDFSSPNIAKEMHVGHL 153

Query: 355 RSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQ 412
           RSTIIGD+ISR+ E  G+ V+RLNHVGDWGTQFGMLI  L+D + + L +     I+DL 
Sbjct: 154 RSTIIGDSISRIFELRGYQVLRLNHVGDWGTQFGMLITQLKDLYSNDLEEIGKIKISDLV 213

Query: 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL 472
            FYK SKKRFD +  F+KR+ + VV LQ  D    +AW+++CD SR++F +IY  L + +
Sbjct: 214 EFYKASKKRFDNESEFQKRSREEVVKLQSGDSKSIQAWKLLCDQSRKEFDEIYKNLKIKI 273

Query: 473 TERGESFYQKHMEQLVPYLEKKGLLELDDGRKI-----MWGEDRGSIPMTIVKSDGGFTY 527
            ERGESFY   ++ ++  L+ K +L  D G K      M  ++   +P+ + K DGGF Y
Sbjct: 274 KERGESFYNPFLKSVIEDLKFKKILIEDQGAKCVFLDGMTNKEGKPLPLIVQKKDGGFNY 333

Query: 528 DTSDLAAIRQRIEE----EKADWIVYVTDLGQGVHF 559
            T+DLAAIR R  +    + A  I+YVTD GQ  HF
Sbjct: 334 ATTDLAAIRYRFNKAPNGDDASRIIYVTDHGQANHF 369



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/349 (40%), Positives = 198/349 (56%), Gaps = 60/349 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQA 622
           STIIGD+ISR+ E  G+ V+RLNHVGDWGTQFGMLI  L+D + + L +     I+DL  
Sbjct: 155 STIIGDSISRIFELRGYQVLRLNHVGDWGTQFGMLITQLKDLYSNDLEEIGKIKISDLVE 214

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK SKKRFD +  F+KR+ + VV LQ  D    +AW+++CD SR++F +IY  L + + 
Sbjct: 215 FYKASKKRFDNESEFQKRSREEVVKLQSGDSKSIQAWKLLCDQSRKEFDEIYKNLKIKIK 274

Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
           ERGESFY   ++ ++  L+ K  L             +T K G                 
Sbjct: 275 ERGESFYNPFLKSVIEDLKFKKILIEDQGAKCVFLDGMTNKEGKPLPLIVQKKDGGFNYA 334

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 I+YVTD GQ  HF  + + AKKA  + P+K ++D V F
Sbjct: 335 TTDLAAIRYRFNKAPNGDDASRIIYVTDHGQANHFAGVFQVAKKAKWI-PDKCQVDHVPF 393

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQA 807
           G+V G D KK KTR G+T++L +LL+E +RR+    L +L+D++R+   T   ++   + 
Sbjct: 394 GLVQGIDGKKLKTREGETIRLKDLLNEAVRRAKEDLLKRLEDEDRYE--TEEFIANTSRI 451

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           +  G +KYADLS NR  +Y FSFDKML   GNTA YLLY   RI+ I R
Sbjct: 452 IGLGAVKYADLSQNRITNYQFSFDKMLSLNGNTAPYLLYTLVRISGIKR 500



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 108/188 (57%), Gaps = 15/188 (7%)

Query: 934  LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
            L +L+D++R+   T   ++   + +  G +KYADLS NR  +Y FSFDKML   GNTA Y
Sbjct: 430  LKRLEDEDRYE--TEEFIANTSRIIGLGAVKYADLSQNRITNYQFSFDKMLSLNGNTAPY 487

Query: 994  LLYAYTRIASIARTAGI--NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
            LLY   RI+ I R      +SED +       ++ EH+ E+ L + LL+ ++V++ + +D
Sbjct: 488  LLYTLVRISGIKRKNDFVYDSEDFQY------INYEHKSEWKLIRKLLKFDEVIISIEKD 541

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  + LC YL+++   F+ FYD    ++++     K +   RL L + TAK +K   ++L
Sbjct: 542  LMPNRLCNYLFELCQTFNRFYDQVPILKEE-----KNIKISRLNLCDLTAKTLKLSLELL 596

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 597  GIETLERM 604



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 16/114 (14%)

Query: 46  HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
            +FGD+QCN  + L KI+     KK P +I++    +    L  N S++K+   +E A P
Sbjct: 43  EEFGDYQCNVCLCLSKIY-----KKKPREISEDFVYL----LNKNKSISKLCKSLEIAGP 93

Query: 106 GFVNVFLS-RVYAGEQMKDIIVNGVQPPTLNKKL------RVLVDFSSPNIARK 152
           GF+N+ L   V   E   +I       P + K L      +V+VDFSSPNIA++
Sbjct: 94  GFINIKLKDEVLINEIKSNIQCPRAGIPLIKKDLDSGLSNKVIVDFSSPNIAKE 147


>gi|123965451|ref|YP_001010532.1| arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|123199817|gb|ABM71425.1| Arginyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 602

 Score =  263 bits (673), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/339 (44%), Positives = 205/339 (60%), Gaps = 25/339 (7%)

Query: 237 NEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKI 296
           N+    +FGD+QCN  + L KI+K     +NP +IA         +L  N  ++ + + +
Sbjct: 38  NQASKEEFGDYQCNICLVLSKIYK-----RNPREIAIEFVQ----KLKENKEISNLCEAL 88

Query: 297 EVAKPGFVNVFLSRVYAGEQIKDIIV---NGVQPPTLNK--KLRVLVDFSSPNIAKEMHV 351
           E+A PGF+N+ L       +IK  I     GV     N   + +V+VDFSSPNIAKEMHV
Sbjct: 89  EIAGPGFINIKLKNNLLIAKIKSNIKCPRAGVPLSNNNSHSQKKVIVDFSSPNIAKEMHV 148

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIA 409
           GHLRSTIIGD+I+++ E  G+ V+RLNHVGDWGTQFGMLI  L+D +   L +     I+
Sbjct: 149 GHLRSTIIGDSIAKIFELRGYTVLRLNHVGDWGTQFGMLITQLKDLYSSDLREIDKITIS 208

Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
           DL  FYK SKKRFD +  FKKR+ + VV LQ  D    KAW+++C+ SR++F +IY  LN
Sbjct: 209 DLVEFYKASKKRFDNETEFKKRSREEVVKLQSGDKKSIKAWKLLCNQSRKEFDEIYKILN 268

Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI-----MWGEDRGSIPMTIVKSDGG 524
           + + ERGESFY   ++ ++  L  K +L  D G K      M  ++   +P+ I K DGG
Sbjct: 269 IKIKERGESFYNPFLKSIIEDLTFKKILVEDQGAKCVFLHGMTNKEGNPLPLIIKKKDGG 328

Query: 525 FTYDTSDLAAIRQRIEEE----KADWIVYVTDLGQGVHF 559
           F Y T+DLAA+R R  +E     A  I+YVTD GQ  HF
Sbjct: 329 FNYATTDLAALRYRFRKEPHGDNATRIIYVTDHGQSNHF 367



 Score =  229 bits (585), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 141/356 (39%), Positives = 195/356 (54%), Gaps = 60/356 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQA 622
           STIIGD+I+++ E  G+ V+RLNHVGDWGTQFGMLI  L+D +   L +     I+DL  
Sbjct: 153 STIIGDSIAKIFELRGYTVLRLNHVGDWGTQFGMLITQLKDLYSSDLREIDKITISDLVE 212

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FYK SKKRFD +  FKKR+ + VV LQ  D    KAW+++C+ SR++F +IY  LN+ + 
Sbjct: 213 FYKASKKRFDNETEFKKRSREEVVKLQSGDKKSIKAWKLLCNQSRKEFDEIYKILNIKIK 272

Query: 683 ERGESFYQKHMEQLVPYL---------------------EKKGN---LSLTKKLG----- 713
           ERGESFY   ++ ++  L                      K+GN   L + KK G     
Sbjct: 273 ERGESFYNPFLKSIIEDLTFKKILVEDQGAKCVFLHGMTNKEGNPLPLIIKKKDGGFNYA 332

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 I+YVTD GQ  HF  + + AK+A  + P    ++ V F
Sbjct: 333 TTDLAALRYRFRKEPHGDNATRIIYVTDHGQSNHFAGVFQVAKRANWI-PEDCEVNHVPF 391

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQA 807
           G+V G D KK KTR GD +KL +LL E ++R+    L +L+ ++R    T   +    + 
Sbjct: 392 GLVQGIDGKKLKTREGDIIKLKDLLSESIKRAKEDLLKRLEKESRFE--TEEFILNTSKV 449

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           +  G +KYADLS NR  +Y FSF+KML   GNTA YLLY   RI+ I R   +N +
Sbjct: 450 IGIGAVKYADLSQNRITNYQFSFEKMLSLNGNTAPYLLYTLVRISGINRKNNMNED 505



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 9/164 (5%)

Query: 956  QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL 1015
            + +  G +KYADLS NR  +Y FSF+KML   GNTA YLLY   RI+ I R   +N +  
Sbjct: 448  KVIGIGAVKYADLSQNRITNYQFSFEKMLSLNGNTAPYLLYTLVRISGINRKNNMNED-- 505

Query: 1016 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1075
              A  S  ++  H+ E+ L + LL+ ++V++ + +DL  + LC YL+++  +F+ FYD  
Sbjct: 506  --AVNSESIAYSHDLEWKLIRKLLKFDEVIVSIEKDLMPNRLCNYLFELCQSFNRFYDQV 563

Query: 1076 YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
              ++ +   KI      RL L   T K +K   ++L I ++ +M
Sbjct: 564  SILKVEMNTKI-----SRLTLCALTEKTLKLSLELLGIDSLERM 602



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 14/117 (11%)

Query: 41  NEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKI 100
           N+    +FGD+QCN  + L KI+     K+NP +IA         +L  N  ++ + + +
Sbjct: 38  NQASKEEFGDYQCNICLVLSKIY-----KRNPREIAIEFV----QKLKENKEISNLCEAL 88

Query: 101 EAAKPGFVNVFLSRVYAGEQMKDIIV---NGVQPPTLN--KKLRVLVDFSSPNIARK 152
           E A PGF+N+ L       ++K  I     GV     N   + +V+VDFSSPNIA++
Sbjct: 89  EIAGPGFINIKLKNNLLIAKIKSNIKCPRAGVPLSNNNSHSQKKVIVDFSSPNIAKE 145


>gi|401424447|ref|XP_003876709.1| putative arginyl-tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
 gi|322492952|emb|CBZ28234.1| putative arginyl-tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 692

 Score =  263 bits (673), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 127/264 (48%), Positives = 179/264 (67%), Gaps = 7/264 (2%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           K  ++QCN+AM L K+     +++ P  ++     +V  EL  N     +ID  E    G
Sbjct: 40  KVSEYQCNNAMGLVKVL---SQQQQPIKMS---PQMVGEELKKNLVDNDIIDVFEPTSKG 93

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+NV + + +    +K+++  G++PP + KK RVLVDFS+PNIAKEMHVGHLRSTIIG++
Sbjct: 94  FINVSIRKEWVTSMVKEVLKQGIRPPVV-KKQRVLVDFSAPNIAKEMHVGHLRSTIIGES 152

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           ISRLLE+  HDV R+NH+GDWGT FGMLI +++  FPDY T  P I+DL AFY+ +KK F
Sbjct: 153 ISRLLEFCQHDVARINHIGDWGTAFGMLILYIKRNFPDYTTNPPDISDLTAFYRAAKKCF 212

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQK 482
           DED+ FK++A   VV LQ  + D  +AW+ ICDVSR +F K+Y RL  T+ ERGESFY  
Sbjct: 213 DEDQEFKEKARLEVVKLQALEEDSIQAWKYICDVSREEFNKVYTRLGATIEERGESFYNP 272

Query: 483 HMEQLVPYLEKKGLLELDDGRKIM 506
            + +++  LE+ G +E+ DG K++
Sbjct: 273 LISKVLGLLEEAGQIEVSDGAKLI 296



 Score =  171 bits (432), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 105/145 (72%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRLLE+  HDV R+NH+GDWGT FGMLI +++  FPDY T  P I+DL AFY
Sbjct: 146 STIIGESISRLLEFCQHDVARINHIGDWGTAFGMLILYIKRNFPDYTTNPPDISDLTAFY 205

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK FDED+ FK++A   VV LQ  + D  +AW+ ICDVSR +F K+Y RL  T+ ER
Sbjct: 206 RAAKKCFDEDQEFKEKARLEVVKLQALEEDSIQAWKYICDVSREEFNKVYTRLGATIEER 265

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLT 709
           GESFY   + +++  LE+ G + ++
Sbjct: 266 GESFYNPLISKVLGLLEEAGQIEVS 290



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 92/153 (60%), Gaps = 5/153 (3%)

Query: 714 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 773
           ++Y TDLGQ  HFR+  + AK  G +       D  GFG+V G D KK KTRSG+TVKL 
Sbjct: 446 VIYCTDLGQYEHFRMCLQTAKDMGWME--HATWDHAGFGLVTGADGKKIKTRSGETVKLK 503

Query: 774 ELLDEGLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830
           +L+DE + RSL  LK++    R    +  E+ +    +  G IKY DL   R  DY FS+
Sbjct: 504 DLMDEAVERSLAILKEREAGERSQGHSEEEMQKLSNIIGIGAIKYFDLKQTRTGDYAFSY 563

Query: 831 DKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           DKMLD  GNTAV+LLY Y RI SI R AG+  E
Sbjct: 564 DKMLDMSGNTAVFLLYQYARICSIKRKAGMADE 596



 Score =  125 bits (315), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/194 (38%), Positives = 103/194 (53%), Gaps = 13/194 (6%)

Query: 929  GLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
             + RSL  LK++    R    +  E+ +    +  G IKY DL   R  DY FS+DKMLD
Sbjct: 509  AVERSLAILKEREAGERSQGHSEEEMQKLSNIIGIGAIKYFDLKQTRTGDYAFSYDKMLD 568

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTAV+LLY Y RI SI R AG+  E L    + T +SLE  +E +LA   LR   V+
Sbjct: 569  MSGNTAVFLLYQYARICSIKRKAGMADEAL---FKITDISLETPQEKSLALCALRFQAVI 625

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
            +    DL  HHL ++ Y++ T FS F+ NC  ++         +   RL L E T   +K
Sbjct: 626  LKTAEDLFPHHLADFAYELMTNFSNFFQNCRVLD-------DPLQNSRLCLVELTRITLK 678

Query: 1106 KCFDILNIRTVHKM 1119
            K  ++LNI T  ++
Sbjct: 679  KTLELLNIETAERI 692



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 7/106 (6%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           K  ++QCN+AM L K+     +++ P  ++     +V  EL  N     +ID  E    G
Sbjct: 40  KVSEYQCNNAMGLVKVL---SQQQQPIKMS---PQMVGEELKKNLVDNDIIDVFEPTSKG 93

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+NV + + +    +K+++  G++PP + KK RVLVDFS+PNIA++
Sbjct: 94  FINVSIRKEWVTSMVKEVLKQGIRPPVV-KKQRVLVDFSAPNIAKE 138



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 7/87 (8%)

Query: 482 KHMEQLVPYLEKKG---LLELDDGRKIMWGED----RGSIPMTIVKSDGGFTYDTSDLAA 534
           K M QL P  +K+     LE+ +   I+ G+     R S P+ +VKSDGG+TYDT+D+ A
Sbjct: 374 KLMAQLAPLYKKQLDPLFLEVFEAAGIVKGDSIFVPRFSFPLMVVKSDGGYTYDTTDVTA 433

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRL 561
              R   EK + ++Y TDLGQ  HFR+
Sbjct: 434 TYHRFVIEKMNRVIYCTDLGQYEHFRM 460


>gi|154339890|ref|XP_001565902.1| putative arginyl-tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134063220|emb|CAM45422.1| putative arginyl-tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 692

 Score =  262 bits (669), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 128/264 (48%), Positives = 178/264 (67%), Gaps = 7/264 (2%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           K  ++QCN+AM L K+       + P  I  S   +V  EL  N     +ID+ E    G
Sbjct: 40  KVSEYQCNNAMGLVKVLS-----QQPQSIKMS-PQMVGEELKKNLVENDIIDEFEPTTKG 93

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+ + + +  + + +++  G++PP + KK RVLVDFSSPNIAKEMHVGHLRSTIIG++
Sbjct: 94  FINISIRKEWVAQMVNEVLNQGIRPPVV-KKQRVLVDFSSPNIAKEMHVGHLRSTIIGES 152

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           ISRLLE+  HDV R+NH+GDWGT FGMLI +++ KFPDY T  P I+DL AFY+ +KK F
Sbjct: 153 ISRLLEFCLHDVSRINHIGDWGTAFGMLILYIKRKFPDYTTNPPAISDLTAFYRAAKKCF 212

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQK 482
           DED+ FK++A   VV LQ  + D  +AW+ ICDVSR +F  +Y RL  T+TERGESFY  
Sbjct: 213 DEDQQFKEQARLEVVKLQALEEDSIQAWKYICDVSREEFNGVYARLGATITERGESFYNP 272

Query: 483 HMEQLVPYLEKKGLLELDDGRKIM 506
            + +++  LE+   +E+ DG K++
Sbjct: 273 LIPKVLNLLEEADQIEVSDGAKLI 296



 Score =  167 bits (424), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 105/145 (72%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRLLE+  HDV R+NH+GDWGT FGMLI +++ KFPDY T  P I+DL AFY
Sbjct: 146 STIIGESISRLLEFCLHDVSRINHIGDWGTAFGMLILYIKRKFPDYTTNPPAISDLTAFY 205

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK FDED+ FK++A   VV LQ  + D  +AW+ ICDVSR +F  +Y RL  T+TER
Sbjct: 206 RAAKKCFDEDQQFKEQARLEVVKLQALEEDSIQAWKYICDVSREEFNGVYARLGATITER 265

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLT 709
           GESFY   + +++  LE+   + ++
Sbjct: 266 GESFYNPLIPKVLNLLEEADQIEVS 290



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 91/154 (59%), Gaps = 5/154 (3%)

Query: 714 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 773
           ++Y TD+GQ  HFR+  + AK  G +       D  GFG+V G D KK KTRSG+T KL 
Sbjct: 446 VIYCTDVGQYEHFRMCLQTAKDMGWME--HATWDHAGFGLVTGADGKKIKTRSGETAKLK 503

Query: 774 ELLDEGLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830
           +L+DE + RSL  LK++    R    +  E+      +  G IKY DL   R  DY FS+
Sbjct: 504 DLMDEAVERSLAILKEREAGERSQGHSEEEMQTLSNIIGIGAIKYFDLKQTRTSDYAFSY 563

Query: 831 DKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           DKMLD  GNTAV+LLY Y RI SI R AG+  E+
Sbjct: 564 DKMLDMSGNTAVFLLYQYARICSIKRKAGVAEEE 597



 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 101/194 (52%), Gaps = 13/194 (6%)

Query: 929  GLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
             + RSL  LK++    R    +  E+      +  G IKY DL   R  DY FS+DKMLD
Sbjct: 509  AVERSLAILKEREAGERSQGHSEEEMQTLSNIIGIGAIKYFDLKQTRTSDYAFSYDKMLD 568

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTAV+LLY Y RI SI R AG+  E+L    + T +SLE  +E  LA   LR   V+
Sbjct: 569  MSGNTAVFLLYQYARICSIKRKAGVAEEEL---LKITDISLETPQEKNLALCALRFQTVI 625

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
            +    DL  HHL ++ Y++ T FS F+ +C  ++         +   RL L E T   +K
Sbjct: 626  LKAVEDLFPHHLADFAYELMTNFSTFFQHCRVVD-------DPLQNSRLCLIELTRITLK 678

Query: 1106 KCFDILNIRTVHKM 1119
            K  ++L I T  ++
Sbjct: 679  KTLELLAIETAERL 692



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 7/106 (6%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           K  ++QCN+AM L K+       + P  I  S   +V  EL  N     +ID+ E    G
Sbjct: 40  KVSEYQCNNAMGLVKVLS-----QQPQSIKMS-PQMVGEELKKNLVENDIIDEFEPTTKG 93

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ + + +  + + +++  G++PP + KK RVLVDFSSPNIA++
Sbjct: 94  FINISIRKEWVAQMVNEVLNQGIRPPVV-KKQRVLVDFSSPNIAKE 138



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 7/87 (8%)

Query: 482 KHMEQLVPYLEKKG---LLELDDGRKIMWGE----DRGSIPMTIVKSDGGFTYDTSDLAA 534
           K M QL P  +K+     LE      I+ G+     R S P+ +VKSDGG+TYDT+D+ A
Sbjct: 374 KLMAQLAPLYKKQLDPLFLEAFKAAGIVKGDCILVPRFSFPLMVVKSDGGYTYDTTDVTA 433

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRL 561
              R   EK D ++Y TD+GQ  HFR+
Sbjct: 434 TYHRFVVEKMDRVIYCTDVGQYEHFRM 460


>gi|308158755|gb|EFO61320.1| Arginyl-tRNA synthetase [Giardia lamblia P15]
          Length = 621

 Score =  262 bits (669), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 147/349 (42%), Positives = 202/349 (57%), Gaps = 51/349 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--------P 616
           STIIGD+I RL EY+ + V R+NHVGDWGTQFGMLI +L D  P+    +         P
Sbjct: 171 STIIGDSICRLYEYVKYKVHRINHVGDWGTQFGMLITYLTDMHPEIADAAAHCKRITMLP 230

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           I +L AFYK++K+RFD D  F+KRAY+ VV LQR +      W  ICD+SR +FQ+IYDR
Sbjct: 231 IDNLVAFYKKAKERFDSDPDFQKRAYEAVVKLQRLNLAEFYLWYKICDISRHEFQRIYDR 290

Query: 677 LNVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGI---------------------- 714
           L++ + E GES Y+  +   V  L++     ++ K  +                      
Sbjct: 291 LDIKIDEFGESSYKFKLGTTVARLKRLHLTQMSDKATVIPIEGMDYPLIIVKSDGGFTYD 350

Query: 715 -------------------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                              VYV D GQ  HF L+ + A+KAG +  N+     V FGVVL
Sbjct: 351 TTDMAAIYHRTQVLHADKCVYVVDAGQSSHFDLVFKAAEKAGWITKNQAV--HVPFGVVL 408

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
           G D K+ KTR+G+TVKL +LLDE +  S+  L+++NR  E +  E+    +AV YG +KY
Sbjct: 409 GNDGKRLKTRAGETVKLEDLLDEAVTESMRLLEERNRDQEFSQEEMRRVAEAVGYGAVKY 468

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           ADLS +R  DY +   +ML+ +GNTA YLLY++TRI+SI R AG+N E+
Sbjct: 469 ADLSSHRIKDYKYDPKRMLNLKGNTAAYLLYSFTRISSICRKAGVNREE 517



 Score =  253 bits (646), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 148/339 (43%), Positives = 199/339 (58%), Gaps = 22/339 (6%)

Query: 243 KFGDFQCNDAMALCKIFKD---KGEKKNPFDIAQSIASV---VTSELATNPSLAKVIDKI 296
           K+G +Q N  M + K+ KD        NP +++         V  + A      K I+ +
Sbjct: 49  KYGHYQFNSTMGIAKLIKDLHYDALPSNPAELSGLFTQAMLCVQDKYAEAKGCPKPIEAV 108

Query: 297 EVAKPGFVNVFLSRVYAGEQIKDIIVN---GV--QPPTLNKKLRVLVDFSSPNIAKEMHV 351
            +A   F+N+ L+  Y   +  DI +    G   +PPTL  K  V VDFSSPN+AK MHV
Sbjct: 109 NIAG-SFINIVLTPEYLLSKCFDIYMAVPFGALPKPPTLPGKC-VAVDFSSPNVAKSMHV 166

Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP----- 406
           GHLRSTIIGD+I RL EY+ + V R+NHVGDWGTQFGMLI +L D  P+    +      
Sbjct: 167 GHLRSTIIGDSICRLYEYVKYKVHRINHVGDWGTQFGMLITYLTDMHPEIADAAAHCKRI 226

Query: 407 ---PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 463
              PI +L AFYK++K+RFD D  F+KRAY+ VV LQR +      W  ICD+SR +FQ+
Sbjct: 227 TMLPIDNLVAFYKKAKERFDSDPDFQKRAYEAVVKLQRLNLAEFYLWYKICDISRHEFQR 286

Query: 464 IYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDG 523
           IYDRL++ + E GES Y+  +   V  L++  L ++ D   ++  E     P+ IVKSDG
Sbjct: 287 IYDRLDIKIDEFGESSYKFKLGTTVARLKRLHLTQMSDKATVIPIEGM-DYPLIIVKSDG 345

Query: 524 GFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           GFTYDT+D+AAI  R +   AD  VYV D GQ  HF L+
Sbjct: 346 GFTYDTTDMAAIYHRTQVLHADKCVYVVDAGQSSHFDLV 384



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 120/205 (58%), Gaps = 2/205 (0%)

Query: 916  RGQEEVQ-DSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNL 974
            R  E V+ + L    +  S+  L+++NR  E +  E+    +AV YG +KYADLS +R  
Sbjct: 418  RAGETVKLEDLLDEAVTESMRLLEERNRDQEFSQEEMRRVAEAVGYGAVKYADLSSHRIK 477

Query: 975  DYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFAL 1034
            DY +   +ML+ +GNTA YLLY++TRI+SI R AG+N E+L  +     +S+    E  L
Sbjct: 478  DYKYDPKRMLNLKGNTAAYLLYSFTRISSICRKAGVNREELYTSDTLKNLSITDPSEINL 537

Query: 1035 AKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRL 1094
               LL+++D ++    DLC H +C+++Y +++A+++FY+ C  IE    G     +  RL
Sbjct: 538  LVALLKVHDTILFTLEDLCPHRICDWVYSVASAYTDFYEKCRVIETSESGD-SICNKSRL 596

Query: 1095 LLAEATAKVMKKCFDILNIRTVHKM 1119
             L E T + ++  F +L IR + +M
Sbjct: 597  ALCEMTRQSLRLAFHLLGIREIDRM 621



 Score = 42.7 bits (99), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 13/116 (11%)

Query: 47  KFGDFQCNDAMALCKIFKD---KGEKKNPFDIAQSIASV---VTSELATNPSLAKVIDKI 100
           K+G +Q N  M + K+ KD        NP +++         V  + A      K I+ +
Sbjct: 49  KYGHYQFNSTMGIAKLIKDLHYDALPSNPAELSGLFTQAMLCVQDKYAEAKGCPKPIEAV 108

Query: 101 EAAKPGFVNVFLSRVYAGEQMKDIIVN---GV--QPPTLNKKLRVLVDFSSPNIAR 151
             A   F+N+ L+  Y   +  DI +    G   +PPTL  K  V VDFSSPN+A+
Sbjct: 109 NIAG-SFINIVLTPEYLLSKCFDIYMAVPFGALPKPPTLPGKC-VAVDFSSPNVAK 162


>gi|146090829|ref|XP_001466367.1| putative arginyl-tRNA synthetase [Leishmania infantum JPCM5]
 gi|134070729|emb|CAM69084.1| putative arginyl-tRNA synthetase [Leishmania infantum JPCM5]
          Length = 692

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/264 (47%), Positives = 179/264 (67%), Gaps = 7/264 (2%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           K  ++QCN+AM L K+     +++ P  ++     +V  EL  N     +ID+ E    G
Sbjct: 40  KVSEYQCNNAMGLVKVL---SQQQQPIKMS---PQMVGEELKKNLVGNDIIDEFEPTPKG 93

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+NV + + +    +K+++  G++PP + K+ RVLVDFS+PNIAKEMHVGHLRSTIIG++
Sbjct: 94  FINVSIRKEWVARMVKEVLKQGIRPPVVTKQ-RVLVDFSAPNIAKEMHVGHLRSTIIGES 152

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           ISRLLE+  HDV R+NH+GDWGT FGMLI +++  FPDY T  P I+DL  FY+ +KK F
Sbjct: 153 ISRLLEFCQHDVARINHIGDWGTAFGMLILYIKRNFPDYTTNPPDISDLTDFYRAAKKCF 212

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQK 482
           DED+ FK++A   VV LQ  + D  +AW+ ICDVSR +F K+Y RL  T+ ERGESFY  
Sbjct: 213 DEDQEFKEKARLEVVKLQALEEDSIQAWKYICDVSREEFDKVYTRLGATIEERGESFYNP 272

Query: 483 HMEQLVPYLEKKGLLELDDGRKIM 506
            + +++  LE+ G +E+ DG K++
Sbjct: 273 LIPKVLDLLEEAGQIEVSDGAKLI 296



 Score =  167 bits (422), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 104/145 (71%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++ISRLLE+  HDV R+NH+GDWGT FGMLI +++  FPDY T  P I+DL  FY
Sbjct: 146 STIIGESISRLLEFCQHDVARINHIGDWGTAFGMLILYIKRNFPDYTTNPPDISDLTDFY 205

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK FDED+ FK++A   VV LQ  + D  +AW+ ICDVSR +F K+Y RL  T+ ER
Sbjct: 206 RAAKKCFDEDQEFKEKARLEVVKLQALEEDSIQAWKYICDVSREEFDKVYTRLGATIEER 265

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLT 709
           GESFY   + +++  LE+ G + ++
Sbjct: 266 GESFYNPLIPKVLDLLEEAGQIEVS 290



 Score =  137 bits (345), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 93/154 (60%), Gaps = 5/154 (3%)

Query: 714 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 773
           ++Y TDLGQ  HFR+  + AK  G +       D  GFG+V G D KK KTRSG+TVKL 
Sbjct: 446 VIYCTDLGQYEHFRMCMQTAKDMGWME--HATWDHAGFGLVTGADGKKIKTRSGETVKLK 503

Query: 774 ELLDEGLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830
           +L+DE + RSL  LK++    R    +  E+ +    +  G IKY DL   R  DY FS+
Sbjct: 504 DLMDEAVERSLAILKEREAGERSQGHSEEEMQKLSNIIGIGAIKYFDLKQTRTGDYAFSY 563

Query: 831 DKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           DKMLD  GNTAV+LLY Y RI SI R AGI  E+
Sbjct: 564 DKMLDMSGNTAVFLLYQYARICSIKRKAGIADEE 597



 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 104/194 (53%), Gaps = 13/194 (6%)

Query: 929  GLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
             + RSL  LK++    R    +  E+ +    +  G IKY DL   R  DY FS+DKMLD
Sbjct: 509  AVERSLAILKEREAGERSQGHSEEEMQKLSNIIGIGAIKYFDLKQTRTGDYAFSYDKMLD 568

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTAV+LLY Y RI SI R AGI  E+L    + T +SLE  +E +LA   LR   V+
Sbjct: 569  MSGNTAVFLLYQYARICSIKRKAGIADEEL---LEITDISLETPQEKSLALCALRFQTVI 625

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
            +    DL  HHL ++ Y++ T FS F+ NC  ++         +   RL L E T   +K
Sbjct: 626  LKTVEDLFPHHLADFAYELMTNFSNFFQNCRVLD-------DPLQNSRLCLVELTRITLK 678

Query: 1106 KCFDILNIRTVHKM 1119
            K  ++LNI T  ++
Sbjct: 679  KTLELLNIETAERI 692



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 63/106 (59%), Gaps = 7/106 (6%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           K  ++QCN+AM L K+     +++ P  ++     +V  EL  N     +ID+ E    G
Sbjct: 40  KVSEYQCNNAMGLVKVL---SQQQQPIKMS---PQMVGEELKKNLVGNDIIDEFEPTPKG 93

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+NV + + +    +K+++  G++PP + K+ RVLVDFS+PNIA++
Sbjct: 94  FINVSIRKEWVARMVKEVLKQGIRPPVVTKQ-RVLVDFSAPNIAKE 138



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 7/87 (8%)

Query: 482 KHMEQLVPYLEKKG---LLELDDGRKIMWGED----RGSIPMTIVKSDGGFTYDTSDLAA 534
           K M QL P  +K+     LE+ +   I+ G+     R S P+ +VKSDGG+TYDT+D+ A
Sbjct: 374 KLMAQLAPLYKKQLDPLFLEVFEAAGIVKGDSILVPRFSFPLMVVKSDGGYTYDTTDVTA 433

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRL 561
              R   EK + ++Y TDLGQ  HFR+
Sbjct: 434 TYHRFVIEKMNRVIYCTDLGQYEHFRM 460


>gi|198456442|ref|XP_002136329.1| GA24005 [Drosophila pseudoobscura pseudoobscura]
 gi|198142680|gb|EDY71404.1| GA24005 [Drosophila pseudoobscura pseudoobscura]
          Length = 282

 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 169/233 (72%), Gaps = 10/233 (4%)

Query: 189 QTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQ 248
           Q+     K  + V++  S+ ++L +VF  A+ +AFPE G+    +A  N     K+GD+Q
Sbjct: 60  QSIAYEAKSAMEVTESFSITEHLENVFARAISLAFPEYGNIPVIIAPVNSASA-KYGDYQ 118

Query: 249 CNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL 308
           CN+AM L K  K+ G  + P DIA        +EL     L+ +I+K+EV   GFVNV+L
Sbjct: 119 CNNAMGLAKKMKEMGVNRTPRDIA--------NELQKCCPLSPIINKLEVGGAGFVNVYL 170

Query: 309 SRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLE 368
           S+ YA + +K+I+ +G++PP + K+ RVLVDFSSPNIAK+MHVGHLRSTIIG+++ RLLE
Sbjct: 171 SKDYAAQSLKNILRHGIKPPRVLKR-RVLVDFSSPNIAKQMHVGHLRSTIIGESVCRLLE 229

Query: 369 YLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
           +L HDV+R+NH+GDWGTQFGMLIAHL+D+FPD+L KSPPI DLQ+FYKESKKR
Sbjct: 230 FLQHDVIRINHLGDWGTQFGMLIAHLEDRFPDFLNKSPPIGDLQSFYKESKKR 282



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/66 (77%), Positives = 62/66 (93%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FPD+L KSPPI DLQ+FY
Sbjct: 217 STIIGESVCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPDFLNKSPPIGDLQSFY 276

Query: 625 KESKKR 630
           KESKKR
Sbjct: 277 KESKKR 282



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 94/148 (63%), Gaps = 10/148 (6%)

Query: 5   VRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFK 64
           V +  S+ ++L +VF  A+ +AFPE G+    +A  N     K+GD+QCN+AM L K  K
Sbjct: 72  VTESFSITEHLENVFARAISLAFPEYGNIPVIIAPVNSASA-KYGDYQCNNAMGLAKKMK 130

Query: 65  DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI 124
           + G  + P DIA        +EL     L+ +I+K+E    GFVNV+LS+ YA + +K+I
Sbjct: 131 EMGVNRTPRDIA--------NELQKCCPLSPIINKLEVGGAGFVNVYLSKDYAAQSLKNI 182

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           + +G++PP + K+ RVLVDFSSPNIA++
Sbjct: 183 LRHGIKPPRVLKR-RVLVDFSSPNIAKQ 209


>gi|149198116|ref|ZP_01875163.1| arginyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149138718|gb|EDM27124.1| arginyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 587

 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 163/409 (39%), Positives = 231/409 (56%), Gaps = 52/409 (12%)

Query: 243 KFGDFQCNDAMALC-KIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEVAK 300
           KFGD+QCN +M L  K+ K +GEK NP  +A +I   +  SEL+  P         E+A 
Sbjct: 37  KFGDYQCNVSMELAGKLGKARGEKVNPRQVATAIMEKLEVSELSEEP---------EIAG 87

Query: 301 PGFVNVFLSRV----YAGEQIKD--IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHL 354
           PGF+N  L       YA   ++D  + +  V  P      RVLVDFS PN+AKEMHVGHL
Sbjct: 88  PGFINFKLKNDVLADYAITMLRDERLGIAKVANPE-----RVLVDFSGPNLAKEMHVGHL 142

Query: 355 RSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQ 412
           RSTIIGD+++R +E+ GH+V+R+NHVGDWGTQFGMLI  ++   P  L       IADL+
Sbjct: 143 RSTIIGDSVARFMEFEGHEVLRMNHVGDWGTQFGMLIQFIRTTRPGALENPENFEIADLE 202

Query: 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL 472
            FY+E+KK FDE + FK  A + VV LQ  D      W++ C+ S +   +IY +L++ +
Sbjct: 203 DFYREAKKMFDESDEFKDAARRAVVDLQSGDEATLAVWKVFCEESLKHCHEIYGQLDIKI 262

Query: 473 TERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWG--------EDRGSIPMTIVKSDGG 524
           ++RGES Y   ++ +V  L+  G  E  +G    WG        +D   +P  + KSDGG
Sbjct: 263 SDRGESAYNDMLKDVVEDLKSAGKAEQTEG---AWGVFLDGYKNKDDEPLPTIVQKSDGG 319

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVV 584
           + Y T+DLAAIR R  E+K D ++YVTD  Q  HF  + E       IS L+++   D +
Sbjct: 320 YIYATTDLAAIRYRFAEQKTDKLIYVTDARQKTHFDQVFE-------ISELMDWAPKDSM 372

Query: 585 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 633
           R  H+G     FGM++    D  P + T++     L+    E++ R  E
Sbjct: 373 R--HIG-----FGMMLG--ADGKP-FKTRTGGTVKLKDLLAEAESRAGE 411



 Score =  198 bits (504), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/351 (35%), Positives = 181/351 (51%), Gaps = 63/351 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
           STIIGD+++R +E+ GH+V+R+NHVGDWGTQFGMLI  ++   P  L       IADL+ 
Sbjct: 144 STIIGDSVARFMEFEGHEVLRMNHVGDWGTQFGMLIQFIRTTRPGALENPENFEIADLED 203

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KK FDE + FK  A + VV LQ  D      W++ C+ S +   +IY +L++ ++
Sbjct: 204 FYREAKKMFDESDEFKDAARRAVVDLQSGDEATLAVWKVFCEESLKHCHEIYGQLDIKIS 263

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSLT--------------------------------- 709
           +RGES Y   ++ +V  L+  G    T                                 
Sbjct: 264 DRGESAYNDMLKDVVEDLKSAGKAEQTEGAWGVFLDGYKNKDDEPLPTIVQKSDGGYIYA 323

Query: 710 --------------KKLGIVYVTDLGQGVHFRLLEECAKKAGILN-PNKTRMDFVGFGVV 754
                         K   ++YVTD  Q  HF  + E ++   +++   K  M  +GFG++
Sbjct: 324 TTDLAAIRYRFAEQKTDKLIYVTDARQKTHFDQVFEISE---LMDWAPKDSMRHIGFGMM 380

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTP----TELSEAQQAVAY 810
           LG D K FKTR+G TVKL +LL E   R+ +  +      ELTP     E  E   A   
Sbjct: 381 LGADGKPFKTRTGGTVKLKDLLAEAESRAGELAR------ELTPGLSEEEYKEIAFAAGL 434

Query: 811 GCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           G +KY+DLSH    DY F ++KML   GNTA+Y+L  + R   ++R AG++
Sbjct: 435 GGVKYSDLSHGVATDYKFDWNKMLATDGNTAIYILMTFARTRGLSRKAGVD 485



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 16/247 (6%)

Query: 882  SHAKTHRKPPFTYTELIEQALKENGLCWVWRGVGRGQEEVQDSLRGYGLRRSLDKLKDKN 941
            +  KTH    F  +EL++ A K++ +  +  G+  G +      R  G  +  D L +  
Sbjct: 348  ARQKTHFDQVFEISELMDWAPKDS-MRHIGFGMMLGADGKPFKTRTGGTVKLKDLLAEAE 406

Query: 942  RHT-----ELTP----TELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAV 992
                    ELTP     E  E   A   G +KY+DLSH    DY F ++KML   GNTA+
Sbjct: 407  SRAGELARELTPGLSEEEYKEIAFAAGLGGVKYSDLSHGVATDYKFDWNKMLATDGNTAI 466

Query: 993  YLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDL 1052
            Y+L  + R   ++R AG++ + L  A  +    L  E+E  L K +    DV   V RDL
Sbjct: 467  YILMTFARTRGLSRKAGVDVDSLVDA--TDLARLTEEQEIKLIKKIASTPDVWQGVVRDL 524

Query: 1053 CLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILN 1112
              H L  +LY+++  F  F+++C  ++ + E     +   RL LA    +V+K    ++ 
Sbjct: 525  APHLLLNHLYELARDFGSFWNSCPIMKLEDE----ELKQSRLALAGGVGRVLKWGLSMVG 580

Query: 1113 IRTVHKM 1119
            I+T+ K+
Sbjct: 581  IQTLDKL 587



 Score = 60.1 bits (144), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 64/126 (50%), Gaps = 24/126 (19%)

Query: 47  KFGDFQCNDAMALC-KIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEAAK 104
           KFGD+QCN +M L  K+ K +GEK NP  +A +I   +  SEL+  P         E A 
Sbjct: 37  KFGDYQCNVSMELAGKLGKARGEKVNPRQVATAIMEKLEVSELSEEP---------EIAG 87

Query: 105 PGFVNVFLSRV----YAGEQMKD--IIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYP 158
           PGF+N  L       YA   ++D  + +  V  P      RVLVDFS PN+A++      
Sbjct: 88  PGFINFKLKNDVLADYAITMLRDERLGIAKVANPE-----RVLVDFSGPNLAKE--MHVG 140

Query: 159 HLPSQI 164
           HL S I
Sbjct: 141 HLRSTI 146


>gi|78185701|ref|YP_378135.1| arginyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|109895047|sp|Q3AVY5.1|SYR_SYNS9 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|78169995|gb|ABB27092.1| arginyl-tRNA synthetase [Synechococcus sp. CC9902]
          Length = 590

 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 153/350 (43%), Positives = 208/350 (59%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
           STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+   P+ L  +  +   DL A
Sbjct: 143 STIIGDSLARVLEFRGHSVLRLNHVGDWGTQFGMLITHLKQVAPETLDTADAVDLGDLVA 202

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+E+KKRFD+D+ F+  +   VV LQ  DP   KAW ++CD SRR+FQK+YDRL++ LT
Sbjct: 203 FYREAKKRFDDDDDFQATSRDEVVKLQGGDPVSLKAWGLLCDQSRREFQKLYDRLDIRLT 262

Query: 683 ERGESFYQKHMEQLVPYLE---------------------KKGN---LSLTKKLG----- 713
           ERGESFY  ++  ++  L+                     K GN   + + K+ G     
Sbjct: 263 ERGESFYNPYLPAVLDGLKAVDLLVTDDGAQCVFLEGVTGKDGNPLPVIVQKRDGGFNYA 322

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 ++YVTD GQ  HF  + + A++AG + P+  R++ V F
Sbjct: 323 TTDLAAIRFRFASPPTGDAAQRVIYVTDAGQANHFAGVFQVAERAGWI-PDGARLEHVPF 381

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
           G+V GED KK KTR+GDTV+L +LLDE + RS   L+ + +  E T ++  +S     V 
Sbjct: 382 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERSEQDLRSRLQEEERTESDAFISHVATTVG 441

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
              +KYADLS NR  +Y FSFD+ML  +GNTA YLLYA  RIA IAR  G
Sbjct: 442 LAAVKYADLSQNRLTNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 491



 Score =  256 bits (654), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 157/370 (42%), Positives = 221/370 (59%), Gaps = 29/370 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           +S+   L      A+Q AFP+     D   + AS  E     FGDFQ N A+ L K  K 
Sbjct: 2   LSLSQTLDAQLRAAMQRAFPDAEATLDPQLAAASKPE-----FGDFQANGALPLAKPLKQ 56

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
                      + IA+ +  +L+ + +   +    ++A PGF+N+ +      E++   +
Sbjct: 57  P---------PRQIATAIVDQLSGDEAFNALCLAPQIAGPGFINLTIRPERLAEELAARL 107

Query: 322 -VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
             + +  P +     V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLNHV
Sbjct: 108 GTDRLGVPVVEDVAPVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHSVLRLNHV 167

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GDWGTQFGMLI HL+   P+ L  +  +   DL AFY+E+KKRFD+D+ F+  +   VV 
Sbjct: 168 GDWGTQFGMLITHLKQVAPETLDTADAVDLGDLVAFYREAKKRFDDDDDFQATSRDEVVK 227

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
           LQ  DP   KAW ++CD SRR+FQK+YDRL++ LTERGESFY  ++  ++  L+   LL 
Sbjct: 228 LQGGDPVSLKAWGLLCDQSRREFQKLYDRLDIRLTERGESFYNPYLPAVLDGLKAVDLLV 287

Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEE----EKADWIVY 549
            DDG + ++     G+D   +P+ + K DGGF Y T+DLAAIR R       + A  ++Y
Sbjct: 288 TDDGAQCVFLEGVTGKDGNPLPVIVQKRDGGFNYATTDLAAIRFRFASPPTGDAAQRVIY 347

Query: 550 VTDLGQGVHF 559
           VTD GQ  HF
Sbjct: 348 VTDAGQANHF 357



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 104/193 (53%), Gaps = 13/193 (6%)

Query: 929  GLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
             + RS   L+ + +  E T ++  +S     V    +KYADLS NR  +Y FSFD+ML  
Sbjct: 409  AVERSEQDLRSRLQEEERTESDAFISHVATTVGLAAVKYADLSQNRLTNYQFSFDRMLAL 468

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
            +GNTA YLLYA  RIA IAR  G    DL V+  +  +     +E+AL + LL+ + V++
Sbjct: 469  QGNTAPYLLYAVVRIAGIARKGG----DLGVS--NAALQFSEPQEWALVRELLKFDRVIV 522

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             V  +L  + LC YL+++S  F+ FYD    ++ + E       + RL L   TA  ++ 
Sbjct: 523  EVEDELLPNRLCSYLFELSQVFNRFYDQVPVLKAEPE-----ALSSRLALCRHTADTLRC 577

Query: 1107 CFDILNIRTVHKM 1119
               +L I T+ +M
Sbjct: 578  GLALLGIPTLERM 590



 Score = 40.8 bits (94), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           +S+   L      A+Q AFP+     D   + AS  E     FGDFQ N A+ L K  K 
Sbjct: 2   LSLSQTLDAQLRAAMQRAFPDAEATLDPQLAAASKPE-----FGDFQANGALPLAKPLKQ 56

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
                      + IA+ +  +L+ + +   +    + A PGF+N+ +      E++   +
Sbjct: 57  P---------PRQIATAIVDQLSGDEAFNALCLAPQIAGPGFINLTIRPERLAEELAARL 107

Query: 126 -VNGVQPPTLNKKLRVLVDFSSPNIARK 152
             + +  P +     V+VDFSSPNIA++
Sbjct: 108 GTDRLGVPVVEDVAPVVVDFSSPNIAKE 135


>gi|443310197|ref|ZP_21039858.1| arginyl-tRNA synthetase [Synechocystis sp. PCC 7509]
 gi|442779741|gb|ELR89973.1| arginyl-tRNA synthetase [Synechocystis sp. PCC 7509]
          Length = 584

 Score =  256 bits (655), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 156/362 (43%), Positives = 220/362 (60%), Gaps = 42/362 (11%)

Query: 215 FTHAVQVAFPELGDKTAS-----VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 269
           F  A+  AF   GD+ A      V ++N K    FGD+Q N A++L K        + P 
Sbjct: 12  FEQALSAAF---GDEYAKTDPLLVPASNPK----FGDYQSNVALSLAKRLG-----QQPR 59

Query: 270 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK----DIIVNGV 325
            IA+ I   +        ++  + +  ++A  GF+N+ L   Y   ++K    D+ +  V
Sbjct: 60  KIAEQIIQKL--------NVVGICETPQLAGAGFINLTLLPSYLETELKSAYTDLRLGIV 111

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
           +  T     RV+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GH+V+RLNH+GDWGT
Sbjct: 112 KAKTPK---RVVVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFQGHNVLRLNHLGDWGT 168

Query: 386 QFGMLIAHLQ--DKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           QFGMLI  L+  +   DY      + +L  FY+ESKKRFD+D  F++R+ Q VVALQ  D
Sbjct: 169 QFGMLITQLREAESVNDY--DLLDLGELVEFYRESKKRFDDDAEFRERSRQAVVALQSGD 226

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTL-TERGESFYQKHMEQLVPYLEKKGLLELDDG 502
              K AW+ +C+ SR +F+ IY  L+V    ERGESFY   + Q+V  L+K GLL  + G
Sbjct: 227 EKAKIAWKFLCNKSRIEFEIIYALLDVHFDEERGESFYNPFLVQVVEDLDKAGLLVENQG 286

Query: 503 RKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGV 557
            K ++       +   +P+ + KSDGG+ Y T+DLAA+R RIE++KA+ ++YVTD GQ  
Sbjct: 287 AKCVFLDGFTNREGEPLPLIVQKSDGGYNYATTDLAAVRYRIEQDKANRLIYVTDAGQAN 346

Query: 558 HF 559
           HF
Sbjct: 347 HF 348



 Score =  244 bits (624), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 146/351 (41%), Positives = 201/351 (57%), Gaps = 55/351 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQ--DKFPDYLTKSPPIADLQA 622
           STIIGD+I+R+LE+ GH+V+RLNH+GDWGTQFGMLI  L+  +   DY      + +L  
Sbjct: 139 STIIGDSIARVLEFQGHNVLRLNHLGDWGTQFGMLITQLREAESVNDY--DLLDLGELVE 196

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL- 681
           FY+ESKKRFD+D  F++R+ Q VVALQ  D   K AW+ +C+ SR +F+ IY  L+V   
Sbjct: 197 FYRESKKRFDDDAEFRERSRQAVVALQSGDEKAKIAWKFLCNKSRIEFEIIYALLDVHFD 256

Query: 682 TERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------------- 713
            ERGESFY   + Q+V  L+K G L              T + G                
Sbjct: 257 EERGESFYNPFLVQVVEDLDKAGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++YVTD GQ  HF  + + A++A +  P    +D V FG+V
Sbjct: 317 ATTDLAAVRYRIEQDKANRLIYVTDAGQANHFAQVFQVARRA-LWIPESIEIDHVPFGLV 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGC 812
            GED KK KTRSG+TVKL +LLDE + R+   L+++ +  +   TE  ++ A   +    
Sbjct: 376 QGEDGKKLKTRSGETVKLKDLLDEAIVRARADLENRLKAEDRQETEEFVANAASVIGISS 435

Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           +KYADLS NR  +YVFS+D+MLD +GNTA Y+LYAY R   I+R   I+ E
Sbjct: 436 VKYADLSQNRTSNYVFSYDRMLDRQGNTAPYMLYAYVRTQGISRRGEIDFE 486



 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 109/185 (58%), Gaps = 10/185 (5%)

Query: 935  DKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYL 994
            ++LK ++R    T   ++ A   +    +KYADLS NR  +YVFS+D+MLD +GNTA Y+
Sbjct: 410  NRLKAEDRQE--TEEFVANAASVIGISSVKYADLSQNRTSNYVFSYDRMLDRQGNTAPYM 467

Query: 995  LYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCL 1054
            LYAY R   I+R   I+ E L     S  + L+HE E  LAK LL++++V+  V +DL  
Sbjct: 468  LYAYVRTQGISRRGEIDFEQL---GNSVDILLQHETELILAKHLLQLDEVVNAVEQDLFP 524

Query: 1055 HHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIR 1114
            + LCEYL+ +S  F++FYD    +  +     + + T RL+L   TA+ +K    +L I+
Sbjct: 525  NRLCEYLFQLSQKFNQFYDKVPVLNAE-----EPLRTSRLVLCNLTARTLKLGLSLLGIQ 579

Query: 1115 TVHKM 1119
             + +M
Sbjct: 580  VLDRM 584



 Score = 43.5 bits (101), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 38/172 (22%)

Query: 19  FTHAVQVAFPELGDKTAS-----VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 73
           F  A+  AF   GD+ A      V ++N K    FGD+Q N A++L K        + P 
Sbjct: 12  FEQALSAAF---GDEYAKTDPLLVPASNPK----FGDYQSNVALSLAKRLG-----QQPR 59

Query: 74  DIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK----DIIVNGV 129
            IA+ I   +        ++  + +  + A  GF+N+ L   Y   ++K    D+ +  V
Sbjct: 60  KIAEQIIQKL--------NVVGICETPQLAGAGFINLTLLPSYLETELKSAYTDLRLGIV 111

Query: 130 QPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQG 181
           +  T     RV+VDFSSPNIA++      HL S I    I  +IA   + QG
Sbjct: 112 KAKTPK---RVVVDFSSPNIAKE--MHVGHLRSTI----IGDSIARVLEFQG 154


>gi|428210471|ref|YP_007094824.1| arginyl-tRNA synthetase [Chroococcidiopsis thermalis PCC 7203]
 gi|428012392|gb|AFY90955.1| arginyl-tRNA synthetase [Chroococcidiopsis thermalis PCC 7203]
          Length = 589

 Score =  256 bits (653), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 175/500 (35%), Positives = 266/500 (53%), Gaps = 70/500 (14%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIA-SVVTSELATNPSLAKVIDKIEVAKP 301
           KFGD+Q N A+ L K        K P  IA+ I   +  ++   NP+         VA P
Sbjct: 38  KFGDYQANVALPLAKQVG-----KPPRAIAEQIVLKLDVNDFCENPT---------VAGP 83

Query: 302 GFVNVFLSRVYAGEQIKDII------VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLR 355
           GF+N+ L   Y   Q++ I       +  V+ P      +V+VD+ SPNIAKEMHVGHLR
Sbjct: 84  GFINLTLKPAYLEAQLQKINPDPRLGIASVKHPK-----KVIVDYPSPNIAKEMHVGHLR 138

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT--KSPPIADLQA 413
             +IGD +SR+LE++GHDVVRL+HVGDWGT FGMLIA+LQ  +P+ LT  ++  + DL +
Sbjct: 139 PAVIGDCLSRILEFIGHDVVRLSHVGDWGTPFGMLIAYLQKAYPEALTTDENLNLGDLSS 198

Query: 414 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-L 472
           FY+++KK+FD DE FK+ A Q VV LQ  +     AW+++C +S R ++ IYD + +   
Sbjct: 199 FYRQAKKQFDTDEGFKEAARQAVVQLQAGEEKTILAWKIVCQLSSRAYRVIYDLMGIAPF 258

Query: 473 TERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTY 527
            ERGESFY   + + +  LE KGL+E+D G K ++ E     +   +P+ + KSDGG+ Y
Sbjct: 259 IERGESFYNALLAETIEELEAKGLVEIDAGAKCIFLEGFTNKEGKPLPLIVQKSDGGYNY 318

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEY--------L 579
            T+DLAAIR R+  +KA  ++Y     Q  HF  + +       I+  +E+        L
Sbjct: 319 ATTDLAAIRYRVNVDKAQRVIYPVGAEQTNHFAQIFQVGKRAGWITDEVEFFHAPFGLVL 378

Query: 580 GHDVVRLNHVGDWGTQFGML----IAHLQD---------------KFPDYLTKSPPIADL 620
           G D  +L        +   L    IAH +                +F +++ +   I+ +
Sbjct: 379 GEDGSKLKTRSGEAVRLKDLLDEAIAHARKDLESRLKEEGREETEEFINHVAQVIGISAV 438

Query: 621 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK-KAWEMICDVSRR---DFQKIYDR 676
           +  Y +  +  + + IF   +Y  ++ALQ     Y   A+  I  +SR+   DF+++ D 
Sbjct: 439 K--YADLSQNRNSNYIF---SYDKMLALQGNTAPYMLYAYARIQGISRKGGIDFEQLGDN 493

Query: 677 LNVTLTERGESFYQKHMEQL 696
           + V L    E    KH+ QL
Sbjct: 494 VKVVLQHETELVLAKHLLQL 513



 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/350 (38%), Positives = 194/350 (55%), Gaps = 53/350 (15%)

Query: 566 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT--KSPPIADLQAF 623
            +IGD +SR+LE++GHDVVRL+HVGDWGT FGMLIA+LQ  +P+ LT  ++  + DL +F
Sbjct: 140 AVIGDCLSRILEFIGHDVVRLSHVGDWGTPFGMLIAYLQKAYPEALTTDENLNLGDLSSF 199

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LT 682
           Y+++KK+FD DE FK+ A Q VV LQ  +     AW+++C +S R ++ IYD + +    
Sbjct: 200 YRQAKKQFDTDEGFKEAARQAVVQLQAGEEKTILAWKIVCQLSSRAYRVIYDLMGIAPFI 259

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSL------------TKKLG----------------- 713
           ERGESFY   + + +  LE KG + +            T K G                 
Sbjct: 260 ERGESFYNALLAETIEELEAKGLVEIDAGAKCIFLEGFTNKEGKPLPLIVQKSDGGYNYA 319

Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
                             ++Y     Q  HF  + +  K+AG +  ++       FG+VL
Sbjct: 320 TTDLAAIRYRVNVDKAQRVIYPVGAEQTNHFAQIFQVGKRAGWIT-DEVEFFHAPFGLVL 378

Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
           GED  K KTRSG+ V+L +LLDE +  +   L+ + +      TE  ++   Q +    +
Sbjct: 379 GEDGSKLKTRSGEAVRLKDLLDEAIAHARKDLESRLKEEGREETEEFINHVAQVIGISAV 438

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           KYADLS NRN +Y+FS+DKML  +GNTA Y+LYAY RI  I+R  GI+ E
Sbjct: 439 KYADLSQNRNSNYIFSYDKMLALQGNTAPYMLYAYARIQGISRKGGIDFE 488



 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 102/170 (60%), Gaps = 7/170 (4%)

Query: 951  LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
            ++   Q +    +KYADLS NRN +Y+FS+DKML  +GNTA Y+LYAY RI  I+R  GI
Sbjct: 426  INHVAQVIGISAVKYADLSQNRNSNYIFSYDKMLALQGNTAPYMLYAYARIQGISRKGGI 485

Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
            + E L     +  V L+HE E  LAK LL++++V+  +  DL  + LCEYL+ +S  F++
Sbjct: 486  DFEQL---GDNVKVVLQHETELVLAKHLLQLDEVISTIEEDLLPNRLCEYLFQLSQKFNQ 542

Query: 1071 FYDNCYCIEK-DAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            FYD    +   +AE   +   T RL+L   TA+ +K    +L I  + +M
Sbjct: 543  FYDRDRGVPVLNAE---EPQRTSRLVLCNLTARTLKLGLSLLGIPVLERM 589



 Score = 44.3 bits (103), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 26/113 (23%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIA-SVVTSELATNPSLAKVIDKIEAAKP 105
           KFGD+Q N A+ L K        K P  IA+ I   +  ++   NP++         A P
Sbjct: 38  KFGDYQANVALPLAKQV-----GKPPRAIAEQIVLKLDVNDFCENPTV---------AGP 83

Query: 106 GFVNVFLSRVYAGEQMKDII------VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           GF+N+ L   Y   Q++ I       +  V+ P      +V+VD+ SPNIA++
Sbjct: 84  GFINLTLKPAYLEAQLQKINPDPRLGIASVKHPK-----KVIVDYPSPNIAKE 131


>gi|407408598|gb|EKF31973.1| arginyl-tRNA synthetase, putative [Trypanosoma cruzi marinkellei]
          Length = 692

 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/306 (42%), Positives = 191/306 (62%), Gaps = 17/306 (5%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE--KKNP 268
           L D+  H+++ AFP +      ++      + K  D+QCN+AM L K+        K +P
Sbjct: 14  LKDIVRHSMERAFPSISPPEVLIS------LGKVTDYQCNNAMGLAKLLSKATPPIKMSP 67

Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPP 328
            ++ +        EL  N     +I++ E    GF+N+ + + +A   +  ++  G+QPP
Sbjct: 68  INVGE--------ELRKNLEENDLIERFEPTPQGFINIVIKQEWAATMVSRLLKMGIQPP 119

Query: 329 TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388
            L KK +VLVDFSSPNIAKEMHVGHLRSTIIG+TI RLLE+ G +V R+NHVGDWGT FG
Sbjct: 120 ILPKK-KVLVDFSSPNIAKEMHVGHLRSTIIGETICRLLEFCGFEVHRINHVGDWGTAFG 178

Query: 389 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
           MLI +L+ + P++LT+ P I DL  FY+E+KK FDED  FK+ A   VV LQ  + +  +
Sbjct: 179 MLILYLKRQHPNFLTEMPDITDLTKFYREAKKCFDEDPNFKEEARLQVVKLQALENESIQ 238

Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWG 508
           AW++ICD+SR++F  IYDRL   + ERGESFY   + +++  L++ G LE   G K+   
Sbjct: 239 AWKIICDISRKEFSLIYDRLGTRIEERGESFYNPIIPKVLNMLQEAGKLEESSGAKLFIS 298

Query: 509 EDRGSI 514
           +++  I
Sbjct: 299 KEKKLI 304



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 102/142 (71%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+TI RLLE+ G +V R+NHVGDWGT FGMLI +L+ + P++LT+ P I DL  FY
Sbjct: 146 STIIGETICRLLEFCGFEVHRINHVGDWGTAFGMLILYLKRQHPNFLTEMPDITDLTKFY 205

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK FDED  FK+ A   VV LQ  + +  +AW++ICD+SR++F  IYDRL   + ER
Sbjct: 206 REAKKCFDEDPNFKEEARLQVVKLQALENESIQAWKIICDISRKEFSLIYDRLGTRIEER 265

Query: 685 GESFYQKHMEQLVPYLEKKGNL 706
           GESFY   + +++  L++ G L
Sbjct: 266 GESFYNPIIPKVLNMLQEAGKL 287



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 94/154 (61%), Gaps = 5/154 (3%)

Query: 714 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 773
           +VY TD+GQ  HFR+  + AK  G +       D  GFG+V G D KK KTRSG+TVKL 
Sbjct: 447 VVYCTDVGQYEHFRMCAQVAKDMGWMG--DATWDHAGFGLVTGADGKKIKTRSGETVKLK 504

Query: 774 ELLDEGLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830
           +LLDE + RSL  L+++    R    T  E+    + +  G IKY DL  +R  DY F++
Sbjct: 505 DLLDEAVERSLAILEEREGGERSQGHTREEMETLSRIIGIGAIKYFDLKQSRVNDYAFNY 564

Query: 831 DKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           DKMLD  GNTAV+LLY Y R+ SI R A ++ E+
Sbjct: 565 DKMLDMSGNTAVFLLYQYARLCSIKRKANVSEEE 598



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 14/194 (7%)

Query: 929  GLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
             + RSL  L+++    R    T  E+    + +  G IKY DL  +R  DY F++DKMLD
Sbjct: 510  AVERSLAILEEREGGERSQGHTREEMETLSRIIGIGAIKYFDLKQSRVNDYAFNYDKMLD 569

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTAV+LLY Y R+ SI R A ++ E+   A     V + + +E  LA    RM  VL
Sbjct: 570  MSGNTAVFLLYQYARLCSIKRKANVSEEEFMKAE----VVINNPQEKKLALCAFRMESVL 625

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
            +    DL  HHL ++ Y++ + FS+F+ NC  I          +   RL L E T   +K
Sbjct: 626  LKTVEDLFPHHLTDFAYELVSCFSDFFQNCKVIG-------DPMQNSRLCLVELTRITLK 678

Query: 1106 KCFDILNIRTVHKM 1119
            K  DILNI    ++
Sbjct: 679  KVLDILNIEATERI 692



 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 17/140 (12%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE--KKNP 72
           L D+  H+++ AFP +      ++      + K  D+QCN+AM L K+        K +P
Sbjct: 14  LKDIVRHSMERAFPSISPPEVLIS------LGKVTDYQCNNAMGLAKLLSKATPPIKMSP 67

Query: 73  FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPP 132
            ++ +        EL  N     +I++ E    GF+N+ + + +A   +  ++  G+QPP
Sbjct: 68  INVGE--------ELRKNLEENDLIERFEPTPQGFINIVIKQEWAATMVSRLLKMGIQPP 119

Query: 133 TLNKKLRVLVDFSSPNIARK 152
            L KK +VLVDFSSPNIA++
Sbjct: 120 ILPKK-KVLVDFSSPNIAKE 138



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 14/106 (13%)

Query: 457 SRRDFQKIYDRLNVTLTERGESFYQKHMEQLV-PYLEKKGLLELDDGRKIMWGEDRGSIP 515
           +R D  KI  +L        E +Y+  +  L     E  G+ + D     M    R + P
Sbjct: 369 ARTDIDKIVTKL--------EPYYKNQLSPLFREVFEAAGITDGD-----MIAVPRFNFP 415

Query: 516 MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           + + KSDGGFTYDT+D+ ++  R   EK D +VY TD+GQ  HFR+
Sbjct: 416 LILQKSDGGFTYDTTDVTSMYHRFVVEKMDRVVYCTDVGQYEHFRM 461


>gi|406596043|ref|YP_006747173.1| arginyl-tRNA ligase [Alteromonas macleodii ATCC 27126]
 gi|407682987|ref|YP_006798161.1| arginyl-tRNA ligase [Alteromonas macleodii str. 'English Channel
           673']
 gi|407686899|ref|YP_006802072.1| arginyl-tRNA ligase [Alteromonas macleodii str. 'Balearic Sea
           AD45']
 gi|406373364|gb|AFS36619.1| arginyl-tRNA ligase [Alteromonas macleodii ATCC 27126]
 gi|407244598|gb|AFT73784.1| arginyl-tRNA ligase [Alteromonas macleodii str. 'English Channel
           673']
 gi|407290279|gb|AFT94591.1| arginyl-tRNA ligase [Alteromonas macleodii str. 'Balearic Sea
           AD45']
          Length = 576

 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 151/373 (40%), Positives = 223/373 (59%), Gaps = 30/373 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++   L + FT A+Q    E+G + A V  +      +FG++Q N AMAL K  K K  
Sbjct: 1   MNIHALLVNRFTEALQ----EMGVENAPVPVSRSAR-PEFGEYQFNGAMALAKQLKQK-- 53

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P DIA+ I   V         L  +  K+EVA PGF+NV L+  +   Q +  + + 
Sbjct: 54  ---PRDIAEKIVETV--------KLDDIASKLEVAGPGFINVHLNDEWLSNQCELSLTDP 102

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                 +K+  ++VD+SSPN+AKEMHVGHLR+TIIGD + ++LE+LGH+V+R NH+GDWG
Sbjct: 103 RLGIAKSKEQNIVVDYSSPNLAKEMHVGHLRTTIIGDAVVKVLEFLGHNVIRQNHMGDWG 162

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGML+AHL DK  D + ++  ++DL+ FY+E+K RFDE+E F  RA + VV LQ  D 
Sbjct: 163 TQFGMLLAHLSDKLQDEVAET-ALSDLEDFYREAKVRFDEEEGFADRAREYVVKLQGGDA 221

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDD 501
                WE   DVS    +++YD+LNV+LT +   GES Y   +  ++  L+ KGL   D 
Sbjct: 222 QCLALWEKFIDVSIAHSEEVYDKLNVSLTRKDIMGESAYNDDLANVISDLKAKGLAVEDQ 281

Query: 502 GRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G ++++     +  G+  + IV KS GG+ Y T+DLAA+R R  +  AD  + +TD  Q 
Sbjct: 282 GAQVVFIPELADKEGNPAVYIVQKSGGGYLYATTDLAAMRYRSGKLNADRTLILTDARQA 341

Query: 557 VHFRLLEESTIIG 569
           +HF+   ++ I+G
Sbjct: 342 LHFK---QTEIVG 351



 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/352 (39%), Positives = 195/352 (55%), Gaps = 54/352 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +TIIGD + ++LE+LGH+V+R NH+GDWGTQFGML+AHL DK  D + ++  ++DL+ FY
Sbjct: 134 TTIIGDAVVKVLEFLGHNVIRQNHMGDWGTQFGMLLAHLSDKLQDEVAET-ALSDLEDFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K RFDE+E F  RA + VV LQ  D      WE   DVS    +++YD+LNV+LT +
Sbjct: 193 REAKVRFDEEEGFADRAREYVVKLQGGDAQCLALWEKFIDVSIAHSEEVYDKLNVSLTRK 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLGIVY-- 716
              GES Y   +  ++  L+ KG                        + + +K G  Y  
Sbjct: 253 DIMGESAYNDDLANVISDLKAKGLAVEDQGAQVVFIPELADKEGNPAVYIVQKSGGGYLY 312

Query: 717 ----------------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                                 +TD  Q +HF+  E   +KAG +   +T  +   FG++
Sbjct: 313 ATTDLAAMRYRSGKLNADRTLILTDARQALHFKQTEIVGRKAGFMKEEQT-YEHCPFGMM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D K FKTR+G TVKL ELLDE + R+   + +  R  +L+  EL E    V  G +K
Sbjct: 372 LGSDGKPFKTRTGGTVKLVELLDEAVERAGKLIAE--RDNDLSEDELKEVAHKVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
           YADLS NR  DY+F++D ML   GNTA YL YAYTR+ S+ R AG++    P
Sbjct: 430 YADLSKNRTTDYMFNWDSMLSFEGNTAPYLQYAYTRVKSLFRKAGVDMATMP 481



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R  +L+  EL E    V  G +KYADLS NR  DY+F++D ML   GNTA YL YAYTR+
Sbjct: 407  RDNDLSEDELKEVAHKVGIGAVKYADLSKNRTTDYMFNWDSMLSFEGNTAPYLQYAYTRV 466

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG++     +A     +++  ++E ALA  L++  +V+  V+R+   H LC YL
Sbjct: 467  KSLFRKAGVD-----MATMPVDINIAEKQEHALAVLLMQFEEVIGTVSREATPHVLCTYL 521

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD+++AF  FY+ C  ++   +G    V   RL L+   AK +++   +L I T+ KM
Sbjct: 522  YDVASAFMSFYEACPMLK---DGIEPAVRDSRLALSALVAKTLEQGLTLLGIETLEKM 576



 Score = 63.2 bits (152), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 18/144 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++   L + FT A+Q    E+G + A V  +      +FG++Q N AMAL K  K K  
Sbjct: 1   MNIHALLVNRFTEALQ----EMGVENAPVPVSRSAR-PEFGEYQFNGAMALAKQLKQK-- 53

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
              P DIA+ I   V         L  +  K+E A PGF+NV L+  +   Q +  + + 
Sbjct: 54  ---PRDIAEKIVETV--------KLDDIASKLEVAGPGFINVHLNDEWLSNQCELSLTDP 102

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
                 +K+  ++VD+SSPN+A++
Sbjct: 103 RLGIAKSKEQNIVVDYSSPNLAKE 126


>gi|407699345|ref|YP_006824132.1| arginyl-tRNA ligase [Alteromonas macleodii str. 'Black Sea 11']
 gi|407248492|gb|AFT77677.1| arginyl-tRNA ligase [Alteromonas macleodii str. 'Black Sea 11']
          Length = 576

 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 151/373 (40%), Positives = 223/373 (59%), Gaps = 30/373 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++   L + FT A+Q    E+G + A V  +      +FG++Q N AMAL K  K K  
Sbjct: 1   MNIHALLVNRFTEALQ----EMGVENAPVPVSRSAR-PEFGEYQFNGAMALAKQLKQK-- 53

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P DIA+ I   V         L  +  K+EVA PGF+NV LS  +   Q +  + + 
Sbjct: 54  ---PRDIAEKIVETV--------KLDDIASKLEVAGPGFINVHLSDEWLSNQCELSLTDP 102

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                 +K+  ++VD+SSPN+AKEMHVGHLR+TIIGD + ++LE+LGH+V+R NH+GDWG
Sbjct: 103 RLGIAKSKEQNIVVDYSSPNLAKEMHVGHLRTTIIGDAVVKVLEFLGHNVIRQNHMGDWG 162

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGML+AHL DK  + + ++  ++DL+ FY+E+K RFDE+E F  RA + VV LQ  D 
Sbjct: 163 TQFGMLLAHLSDKLQEEVAET-ALSDLEDFYREAKVRFDEEEGFADRAREYVVKLQGGDA 221

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDD 501
                WE   DVS    +++YD+LNV+LT +   GES Y   +  ++  L+ KGL   D 
Sbjct: 222 QCLALWEKFIDVSIAHSEEVYDKLNVSLTRKDIMGESAYNDDLANVISDLKAKGLAVEDQ 281

Query: 502 GRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G ++++     +  G+  + IV KS GG+ Y T+DLAA+R R  +  AD  + +TD  Q 
Sbjct: 282 GAQVVFIPELADKEGNPAVYIVQKSGGGYLYATTDLAAMRYRSGKLNADRTLILTDARQA 341

Query: 557 VHFRLLEESTIIG 569
           +HF+   ++ I+G
Sbjct: 342 LHFK---QTEIVG 351



 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 138/352 (39%), Positives = 195/352 (55%), Gaps = 54/352 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +TIIGD + ++LE+LGH+V+R NH+GDWGTQFGML+AHL DK  + + ++  ++DL+ FY
Sbjct: 134 TTIIGDAVVKVLEFLGHNVIRQNHMGDWGTQFGMLLAHLSDKLQEEVAET-ALSDLEDFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K RFDE+E F  RA + VV LQ  D      WE   DVS    +++YD+LNV+LT +
Sbjct: 193 REAKVRFDEEEGFADRAREYVVKLQGGDAQCLALWEKFIDVSIAHSEEVYDKLNVSLTRK 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLGIVY-- 716
              GES Y   +  ++  L+ KG                        + + +K G  Y  
Sbjct: 253 DIMGESAYNDDLANVISDLKAKGLAVEDQGAQVVFIPELADKEGNPAVYIVQKSGGGYLY 312

Query: 717 ----------------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                                 +TD  Q +HF+  E   +KAG +   +T  +   FG++
Sbjct: 313 ATTDLAAMRYRSGKLNADRTLILTDARQALHFKQTEIVGRKAGFMKEEQT-YEHCPFGMM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D K FKTR+G TVKL ELLDE + R+   + +  R  +L+  EL E    V  G +K
Sbjct: 372 LGSDGKPFKTRTGGTVKLVELLDEAVERAGKLIAE--RDNDLSEDELKEVAHKVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
           YADLS NR  DY+F++D ML   GNTA YL YAYTR+ S+ R AG++    P
Sbjct: 430 YADLSKNRTTDYMFNWDSMLSFEGNTAPYLQYAYTRVKSLFRKAGVDMATMP 481



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R  +L+  EL E    V  G +KYADLS NR  DY+F++D ML   GNTA YL YAYTR+
Sbjct: 407  RDNDLSEDELKEVAHKVGIGAVKYADLSKNRTTDYMFNWDSMLSFEGNTAPYLQYAYTRV 466

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG++     +A     +++  ++E ALA  L++  +V+  V+R+   H LC YL
Sbjct: 467  KSLFRKAGVD-----MATMPVDINIAEKQEHALAVLLMQFEEVIGTVSREATPHVLCTYL 521

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD+++AF  FY+ C  ++   +G    V   RL L+   AK +++   +L I T+ KM
Sbjct: 522  YDVASAFMSFYEACPMLK---DGIEPAVRDSRLALSALVAKTLEQGLTLLGIETLEKM 576



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 18/144 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++   L + FT A+Q    E+G + A V  +      +FG++Q N AMAL K  K K  
Sbjct: 1   MNIHALLVNRFTEALQ----EMGVENAPVPVSRSAR-PEFGEYQFNGAMALAKQLKQK-- 53

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
              P DIA+ I   V         L  +  K+E A PGF+NV LS  +   Q +  + + 
Sbjct: 54  ---PRDIAEKIVETV--------KLDDIASKLEVAGPGFINVHLSDEWLSNQCELSLTDP 102

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
                 +K+  ++VD+SSPN+A++
Sbjct: 103 RLGIAKSKEQNIVVDYSSPNLAKE 126


>gi|226701384|sp|B8CI29.1|SYR_SHEPW RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|212554851|gb|ACJ27305.1| Arginyl-tRNA synthetase [Shewanella piezotolerans WP3]
          Length = 581

 Score =  252 bits (644), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 140/325 (43%), Positives = 198/325 (60%), Gaps = 22/325 (6%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K       +KNP +IAQ I          N   +  ++K+E+A PGF+
Sbjct: 41  GDFATNLAMMLTK-----AARKNPREIAQLIID--------NLPQSSHVEKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F+       Q+ D + +     TL +   V+VD+SSPN+AKEMHVGHLRSTIIGD++ 
Sbjct: 88  NFFIDDNALANQLMDALNSDHLGVTLPESQTVVVDYSSPNLAKEMHVGHLRSTIIGDSVV 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKKRFD 423
           R LE++GH+V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K RFD
Sbjct: 148 RSLEFMGHNVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAQIELSDLENFYRAAKVRFD 207

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFY 480
           E E F  RA + VVALQ  D    K W    D+S     +IY+RL V+LT    RGES Y
Sbjct: 208 ESEDFANRARKLVVALQSGDEYCNKLWREFNDISLSHCHEIYERLGVSLTRQDVRGESSY 267

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAI 535
              +EQ+V  L+ +GLL   +G K+++ E+  +     +P+ I K+DGG+ Y TSD+AA+
Sbjct: 268 NDDLEQVVADLDSQGLLSESNGAKVVFQEEFKNKEGEPLPVIIQKADGGYLYATSDMAAM 327

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFR 560
           R R    KAD  +Y  DL Q +HF+
Sbjct: 328 RYRSNVLKADRALYFVDLRQALHFQ 352



 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 189/345 (54%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE++GH+V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRSLEFMGHNVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAQIELSDLENF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE E F  RA + VVALQ  D    K W    D+S     +IY+RL V+LT 
Sbjct: 199 YRAAKVRFDESEDFANRARKLVVALQSGDEYCNKLWREFNDISLSHCHEIYERLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV------------------------- 715
              RGES Y   +EQ+V  L+ +G LS +    +V                         
Sbjct: 259 QDVRGESSYNDDLEQVVADLDSQGLLSESNGAKVVFQEEFKNKEGEPLPVIIQKADGGYL 318

Query: 716 ----------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                 Y  DL Q +HF+ + + AK A  +    +  + +GFG 
Sbjct: 319 YATSDMAAMRYRSNVLKADRALYFVDLRQALHFQQVFKLAKTAKFVREEMS-FEHMGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTRSG  VKL +LL E   R+L+ ++ KN   ++   EL+E  + V    +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLIDLLKEADTRALELVRSKN--PDMDEAELAEIARVVGIASV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 113/188 (60%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++   EL+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEAELAEIARVVGIASVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I + A    +D+ ++     + LEHEKE  L   L +  +V+  V   
Sbjct: 464  PYLLYAYTRVAGIFKRA----QDVDLS--DAKIVLEHEKEKDLGTKLAQFGEVMNRVVNK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YL++++ AFS FY+ C  +  D E + K+    RLLLA+ TAK +K+  ++L
Sbjct: 518  GQPHALCAYLFELAGAFSSFYEACPVLAADTEAQKKS----RLLLAQLTAKTLKQGLNLL 573

Query: 1112 NIRTVHKM 1119
             + T+ +M
Sbjct: 574  GLETLERM 581



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 15/116 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K       +KNP +IAQ I          N   +  ++K+E A PGF+
Sbjct: 41  GDFATNLAMMLTK-----AARKNPREIAQLIID--------NLPQSSHVEKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           N F+       Q+ D + +     TL +   V+VD+SSPN+A++      HL S I
Sbjct: 88  NFFIDDNALANQLMDALNSDHLGVTLPESQTVVVDYSSPNLAKE--MHVGHLRSTI 141


>gi|148826102|ref|YP_001290855.1| arginyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|229847101|ref|ZP_04467206.1| arginyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|166232791|sp|A5UCH1.1|SYR_HAEIE RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|148716262|gb|ABQ98472.1| arginyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|229809930|gb|EEP45651.1| arginyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 577

 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 215/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMVIA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDEIF ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQG 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRAMWKRLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            DDG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 EDDGALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 193/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEIFAEKARNYVVKLQGGDEYCRAMWKRLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVEDDGALVVYLDEFKNKEGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKQAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           +  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 IGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTEINS 478



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +A+  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKQAVIEAIGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTEINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E     V   RL LA  T K +K+  ++L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDEA----VKLSRLKLALLTEKTLKQGLELLGIKTVEKM 577



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMVIA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|407847868|gb|EKG03446.1| arginyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 692

 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 130/306 (42%), Positives = 190/306 (62%), Gaps = 17/306 (5%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE--KKNP 268
           L D+  HA++ AFP +      ++      + K  ++QCN+AM L K+        K +P
Sbjct: 14  LKDIVRHAMEKAFPTISTPEVLIS------LGKVTEYQCNNAMGLAKLLSKATPPMKMSP 67

Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPP 328
            ++ +        EL  N     +I++ E    GF+N+ + + +A   +  ++  G+QPP
Sbjct: 68  INVGE--------ELRKNLEENDLIERFEPTPQGFINIAIKQEWAATMVSRLLKMGIQPP 119

Query: 329 TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388
            L  K +VLVDFSSPNIAKEMHVGHLRSTIIG+TI RL E+ G +V R+NHVGDWGT FG
Sbjct: 120 ILPPK-KVLVDFSSPNIAKEMHVGHLRSTIIGETICRLFEFCGFEVHRVNHVGDWGTAFG 178

Query: 389 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
           MLI +L+ + P++LT+ P I DL  FY+E+KK FDED  FK+ A   VV LQ  + +  +
Sbjct: 179 MLILYLKRQHPNFLTEMPDITDLTKFYREAKKCFDEDPKFKEEARLQVVKLQALENESIQ 238

Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWG 508
           AW++ICD+SR++F  IYDRL   + ERGESFY   + +++  L++ G LE   G KI+  
Sbjct: 239 AWKIICDISRKEFSLIYDRLGTRIEERGESFYNPIIPRVLSLLQEAGKLEESSGAKIVIS 298

Query: 509 EDRGSI 514
           +++  I
Sbjct: 299 KEKKLI 304



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/151 (49%), Positives = 104/151 (68%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+TI RL E+ G +V R+NHVGDWGT FGMLI +L+ + P++LT+ P I DL  FY
Sbjct: 146 STIIGETICRLFEFCGFEVHRVNHVGDWGTAFGMLILYLKRQHPNFLTEMPDITDLTKFY 205

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK FDED  FK+ A   VV LQ  + +  +AW++ICD+SR++F  IYDRL   + ER
Sbjct: 206 REAKKCFDEDPKFKEEARLQVVKLQALENESIQAWKIICDISRKEFSLIYDRLGTRIEER 265

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIV 715
           GESFY   + +++  L++ G L  +    IV
Sbjct: 266 GESFYNPIIPRVLSLLQEAGKLEESSGAKIV 296



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 5/154 (3%)

Query: 714 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 773
           +VY TD+GQ  HFR+  + AK  G +       D  GFG+V G D KK KTRSG+T KL 
Sbjct: 447 VVYCTDVGQYEHFRMCAQLAKDMGWMG--DATWDHAGFGLVTGADGKKIKTRSGETAKLK 504

Query: 774 ELLDEGLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830
           +LLDE + RSL  L+++    R    T  E+    + +    IKY DL  +R  DY FS+
Sbjct: 505 DLLDEAVERSLAILEEREGGERSQGHTKEEMETLSKIIGIAAIKYFDLKQSRVNDYAFSY 564

Query: 831 DKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           DKMLD  GNTAV+LLY Y R+ SI R A ++ ++
Sbjct: 565 DKMLDMSGNTAVFLLYQYARLCSIKRKANVSEDE 598



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 102/194 (52%), Gaps = 14/194 (7%)

Query: 929  GLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
             + RSL  L+++    R    T  E+    + +    IKY DL  +R  DY FS+DKMLD
Sbjct: 510  AVERSLAILEEREGGERSQGHTKEEMETLSKIIGIAAIKYFDLKQSRVNDYAFSYDKMLD 569

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTAV+LLY Y R+ SI R A + SED  + A+   ++   EK  AL    LRM  VL
Sbjct: 570  MSGNTAVFLLYQYARLCSIKRKANV-SEDEFMKAEVV-INTPQEKRLALCA--LRMESVL 625

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
            +    DL  HHL ++ Y++ + FS+F+ NC  +          +   RL L E T   +K
Sbjct: 626  LKTVEDLFPHHLTDFAYELVSCFSDFFQNCKVVG-------DPMQNSRLCLVELTRITLK 678

Query: 1106 KCFDILNIRTVHKM 1119
            K FDILNI    ++
Sbjct: 679  KVFDILNIEATERI 692



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 17/140 (12%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE--KKNP 72
           L D+  HA++ AFP +      ++      + K  ++QCN+AM L K+        K +P
Sbjct: 14  LKDIVRHAMEKAFPTISTPEVLIS------LGKVTEYQCNNAMGLAKLLSKATPPMKMSP 67

Query: 73  FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPP 132
            ++ +        EL  N     +I++ E    GF+N+ + + +A   +  ++  G+QPP
Sbjct: 68  INVGE--------ELRKNLEENDLIERFEPTPQGFINIAIKQEWAATMVSRLLKMGIQPP 119

Query: 133 TLNKKLRVLVDFSSPNIARK 152
            L  K +VLVDFSSPNIA++
Sbjct: 120 ILPPK-KVLVDFSSPNIAKE 138



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 14/106 (13%)

Query: 457 SRRDFQKIYDRLNVTLTERGESFYQKHMEQLV-PYLEKKGLLELDDGRKIMWGEDRGSIP 515
           +R D  KI  +L        E +Y+  +  L     E  G+    DG  I     R + P
Sbjct: 369 ARTDIDKIVPKL--------EPYYKNQLSPLFREVFEAAGI---TDGDTI--AVPRFNFP 415

Query: 516 MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           + + KSDGGFTYDT+D+ ++  R   EK D +VY TD+GQ  HFR+
Sbjct: 416 LILQKSDGGFTYDTTDVTSMYHRFVMEKMDRVVYCTDVGQYEHFRM 461


>gi|342185301|emb|CCC94784.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
          Length = 484

 Score =  252 bits (643), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/306 (42%), Positives = 191/306 (62%), Gaps = 17/306 (5%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFK--DKGEKKNP 268
           L ++  + +Q  FP L      +       + K  ++QCN+AM L K+    D   K  P
Sbjct: 14  LKEIVHNTIQRTFPSLKPPEVLIG------LGKTTEYQCNNAMGLAKLLSTADPPVKMGP 67

Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPP 328
                   S+V  EL  N     +I+  E    GF+N+ +   +    ++ I+  G++PP
Sbjct: 68  --------SLVGEELKKNLEENDIIESFEPTPQGFINISIKAGWVAGSVEKILKEGIRPP 119

Query: 329 TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388
           ++ K+ +VLVDFSSPNIAKEMHVGHLRSTIIG+ I RL E+  ++V R+NHVGDWGT FG
Sbjct: 120 SIPKQ-KVLVDFSSPNIAKEMHVGHLRSTIIGEAICRLFEFCQYEVHRINHVGDWGTAFG 178

Query: 389 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
           MLI +L+ + P+++T++P IADL  FY+E+KK FD+D  FK++A   VV LQ  + +  K
Sbjct: 179 MLILYLKHQHPNFITETPNIADLTLFYREAKKCFDDDPEFKEQARLQVVKLQALEEESIK 238

Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWG 508
           AW++ICD+SR +F++IYDRLN+T+ ERGESFY   +  ++  LE KG L+  +G K+   
Sbjct: 239 AWKIICDISRNEFRQIYDRLNITIEERGESFYNPLIPDVLKLLEAKGKLQESNGAKVSMP 298

Query: 509 EDRGSI 514
            DR  I
Sbjct: 299 TDRKLI 304



 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 110/155 (70%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+ I RL E+  ++V R+NHVGDWGT FGMLI +L+ + P+++T++P IADL  FY
Sbjct: 146 STIIGEAICRLFEFCQYEVHRINHVGDWGTAFGMLILYLKHQHPNFITETPNIADLTLFY 205

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK FD+D  FK++A   VV LQ  + +  KAW++ICD+SR +F++IYDRLN+T+ ER
Sbjct: 206 REAKKCFDDDPEFKEQARLQVVKLQALEEESIKAWKIICDISRNEFRQIYDRLNITIEER 265

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTD 719
           GESFY   +  ++  LE KG L  +    +   TD
Sbjct: 266 GESFYNPLIPDVLKLLEAKGKLQESNGAKVSMPTD 300



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 17/140 (12%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFK--DKGEKKNP 72
           L ++  + +Q  FP L      +       + K  ++QCN+AM L K+    D   K  P
Sbjct: 14  LKEIVHNTIQRTFPSLKPPEVLIG------LGKTTEYQCNNAMGLAKLLSTADPPVKMGP 67

Query: 73  FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPP 132
                   S+V  EL  N     +I+  E    GF+N+ +   +    ++ I+  G++PP
Sbjct: 68  --------SLVGEELKKNLEENDIIESFEPTPQGFINISIKAGWVAGSVEKILKEGIRPP 119

Query: 133 TLNKKLRVLVDFSSPNIARK 152
           ++ K+ +VLVDFSSPNIA++
Sbjct: 120 SIPKQ-KVLVDFSSPNIAKE 138



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 11/92 (11%)

Query: 484 MEQLVPYLEK--KGLL-----ELDDGRKIMWGE----DRGSIPMTIVKSDGGFTYDTSDL 532
           +++LVP L+   KG L     E+ +   I+ GE     R + P+ +VKSDGGFTYDT+D+
Sbjct: 373 VDRLVPLLQPLFKGKLSPLFREVFEAAGIIEGEYVTVPRFTFPLMVVKSDGGFTYDTTDI 432

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
           AA+  R   EK D +VY TD+GQ  H R+  E
Sbjct: 433 AAMYHRFVIEKMDRVVYCTDVGQYEHLRMCAE 464


>gi|419839061|ref|ZP_14362479.1| arginine--tRNA ligase [Haemophilus haemolyticus HK386]
 gi|386909772|gb|EIJ74436.1| arginine--tRNA ligase [Haemophilus haemolyticus HK386]
          Length = 577

 Score =  251 bits (642), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/364 (39%), Positives = 210/364 (57%), Gaps = 26/364 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEVSTALSEN 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                   K  V++D+SSPN+AKEMHVGHLRSTIIGD + R LE+LGH+V+R NHVGDWG
Sbjct: 104 NLGIQATDKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHNVIRANHVGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDEIF ++A   VV LQ  D 
Sbjct: 164 TQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQGGDE 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDD 501
             +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL   DD
Sbjct: 223 YCRAMWKRLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVEDD 282

Query: 502 GRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D  Q 
Sbjct: 283 GALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQS 342

Query: 557 VHFR 560
            H +
Sbjct: 343 QHMQ 346



 Score =  233 bits (594), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 144/355 (40%), Positives = 192/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEIFAEKARNYVVKLQGGDEYCRAMWKRLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVEDDGALVVYLDEFKNKEGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++LE +KE ALA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTLEDDKERALAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    +V   RL LA  T K +K+  ++L IRTV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SVKLSRLKLALLTEKTLKQGLELLGIRTVEKM 577



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 19/156 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEVSTALSEN 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                   K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQATDKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|410647721|ref|ZP_11358140.1| arginyl-tRNA synthetase [Glaciecola agarilytica NO2]
 gi|410132628|dbj|GAC06539.1| arginyl-tRNA synthetase [Glaciecola agarilytica NO2]
          Length = 578

 Score =  251 bits (642), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/332 (42%), Positives = 199/332 (59%), Gaps = 29/332 (8%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGD+Q N AMAL K+ K K     P DIA  I + V         L  + +K+EVA PGF
Sbjct: 36  FGDYQFNGAMALAKVLKQK-----PRDIADKIVAAV--------ELDGIAEKLEVAGPGF 82

Query: 304 VNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLR----VLVDFSSPNIAKEMHVGHLRSTII 359
           +N++LS+ +   Q+ +   +    P LN + +    V+VD+SSPN+AKEMHVGHLR+TII
Sbjct: 83  INIYLSKDWLATQLSEAAAD----PRLNIETQPSKTVVVDYSSPNLAKEMHVGHLRTTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + + LE++GH V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY+E+K
Sbjct: 139 GDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFYREAK 198

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
            RFDE++ F  RA + VV LQ  D      W+   DVS    +++YD+LNV+LT     G
Sbjct: 199 VRFDEEDGFADRAREYVVKLQGGDAHCLALWQNFIDVSITHSEEVYDKLNVSLTRADIMG 258

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G ++++     +  G     IV KS GG+ Y T+D
Sbjct: 259 ESAYNHDLANVVSELQAKGLAVESEGAQVVFLPELADKEGKPAAYIVQKSGGGYLYATTD 318

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           LAA+R R ++  AD  + +TD  Q +HF+  E
Sbjct: 319 LAAVRYRNKQLHADRTLILTDARQALHFKQTE 350



 Score =  236 bits (603), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 188/349 (53%), Gaps = 53/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +TIIGD + + LE++GH V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY
Sbjct: 135 TTIIGDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K RFDE++ F  RA + VV LQ  D      W+   DVS    +++YD+LNV+LT  
Sbjct: 195 REAKVRFDEEDGFADRAREYVVKLQGGDAHCLALWQNFIDVSITHSEEVYDKLNVSLTRA 254

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY------------------------- 716
              GES Y   +  +V  L+ KG    ++   +V+                         
Sbjct: 255 DIMGESAYNHDLANVVSELQAKGLAVESEGAQVVFLPELADKEGKPAAYIVQKSGGGYLY 314

Query: 717 ----------------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                                 +TD  Q +HF+  E  A+KAG + P +T  +   FG++
Sbjct: 315 ATTDLAAVRYRNKQLHADRTLILTDARQALHFKQTEIVARKAGFIEPEQT-YEHCPFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D + FKTR+G TVKL ELLDE + R+   L    R T+L+  EL      +  G +K
Sbjct: 374 LGSDGRPFKTRTGGTVKLVELLDEAVERAQALL--SKRETDLSTDELKVLANKIGIGAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+FS+D ML   GNTA YL YAYTR+ S+ R AG++ +
Sbjct: 432 YADLSKNRTTDYMFSWDSMLSFEGNTAPYLQYAYTRVMSVFRKAGVDHQ 480



 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 99/178 (55%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T+L+  EL      +  G +KYADLS NR  DY+FS+D ML   GNTA YL YAYTR+
Sbjct: 409  RETDLSTDELKVLANKIGIGAVKYADLSKNRTTDYMFSWDSMLSFEGNTAPYLQYAYTRV 468

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG++ + L  A     ++L+  +E  LA   L+  + +  V  +   H LC YL
Sbjct: 469  MSVFRKAGVDHQTLNAA-----ITLDAPQEKMLAVKQLQYVEAINQVIAEGTPHVLCTYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y++++ F  FY+ C  ++   EG    V   R+ LA  TAK ++    +L I T+ +M
Sbjct: 524  YELASLFMSFYEACPMLK---EGIAPEVRDSRMTLAALTAKTLQSGLSLLGIDTMERM 578



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 120/266 (45%), Gaps = 43/266 (16%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGD+Q N AMAL K+ K K     P DIA  I + V         L  + +K+E A PGF
Sbjct: 36  FGDYQFNGAMALAKVLKQK-----PRDIADKIVAAV--------ELDGIAEKLEVAGPGF 82

Query: 108 VNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLR----VLVDFSSPNIARKGGFLYPHLPSQ 163
           +N++LS+ +   Q+ +   +    P LN + +    V+VD+SSPN+A++      HL + 
Sbjct: 83  INIYLSKDWLATQLSEAAAD----PRLNIETQPSKTVVVDYSSPNLAKE--MHVGHLRTT 136

Query: 164 IHDILISKAI---AEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDV--FTHA 218
           I    + KA+     +  +Q       +Q       +N  +         LSD+  F   
Sbjct: 137 IIGDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFYRE 196

Query: 219 VQVAFPELGDKTASVASTNEKYVHKF--GDFQCNDAMALCKIFKDKG-----EKKNPFDI 271
            +V F    D+    A    +YV K   GD  C   +AL + F D       E  +  ++
Sbjct: 197 AKVRF----DEEDGFADRAREYVVKLQGGDAHC---LALWQNFIDVSITHSEEVYDKLNV 249

Query: 272 AQSIASVVTSELATNPSLAKVIDKIE 297
           + + A ++  E A N  LA V+ +++
Sbjct: 250 SLTRADIM-GESAYNHDLANVVSELQ 274


>gi|332307387|ref|YP_004435238.1| arginyl-tRNA synthetase [Glaciecola sp. 4H-3-7+YE-5]
 gi|332174716|gb|AEE23970.1| arginyl-tRNA synthetase [Glaciecola sp. 4H-3-7+YE-5]
          Length = 578

 Score =  251 bits (642), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/332 (42%), Positives = 199/332 (59%), Gaps = 29/332 (8%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGD+Q N AMAL K+ K K     P DIA  I + V         L  + +K+EVA PGF
Sbjct: 36  FGDYQFNGAMALAKVLKQK-----PRDIADKIVAAV--------ELDGIAEKLEVAGPGF 82

Query: 304 VNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLR----VLVDFSSPNIAKEMHVGHLRSTII 359
           +N++LS+ +   Q+ +   +    P LN + +    V+VD+SSPN+AKEMHVGHLR+TII
Sbjct: 83  INIYLSKDWLATQLSEAAAD----PRLNIETQRSKTVVVDYSSPNLAKEMHVGHLRTTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + + LE++GH V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY+E+K
Sbjct: 139 GDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFYREAK 198

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
            RFDE++ F  RA + VV LQ  D      W+   DVS    +++YD+LNV+LT     G
Sbjct: 199 VRFDEEDGFADRAREYVVKLQGGDAHCLALWQNFIDVSITHSEEVYDKLNVSLTRADIMG 258

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G ++++     +  G     IV KS GG+ Y T+D
Sbjct: 259 ESAYNHDLANVVSELQAKGLAVESEGAQVVFLPELADKEGKPAAYIVQKSGGGYLYATTD 318

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           LAA+R R ++  AD  + +TD  Q +HF+  E
Sbjct: 319 LAAVRYRNKQLHADRTLILTDARQALHFKQTE 350



 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 201/379 (53%), Gaps = 57/379 (15%)

Query: 536 RQRIEEEKADWIVY---VTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           R  IE +++  +V      +L + +H   L  +TIIGD + + LE++GH V+R NH+GDW
Sbjct: 104 RLNIETQRSKTVVVDYSSPNLAKEMHVGHLR-TTIIGDAVVKALEFMGHKVIRQNHMGDW 162

Query: 593 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 652
           GTQFGML+AHL DK          ++DL+ FY+E+K RFDE++ F  RA + VV LQ  D
Sbjct: 163 GTQFGMLLAHLNDKLESNQVAETALSDLEDFYREAKVRFDEEDGFADRAREYVVKLQGGD 222

Query: 653 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSLT 709
                 W+   DVS    +++YD+LNV+LT     GES Y   +  +V  L+ KG    +
Sbjct: 223 AHCLALWQNFIDVSITHSEEVYDKLNVSLTRADIMGESAYNHDLANVVSELQAKGLAVES 282

Query: 710 KKLGIVY-----------------------------------------------VTDLGQ 722
           +   +V+                                               +TD  Q
Sbjct: 283 EGAQVVFLPELADKEGKPAAYIVQKSGGGYLYATTDLAAVRYRNKQLHADRTLILTDARQ 342

Query: 723 GVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRR 782
            +HF+  E  A+KAG + P +T  +   FG++LG D + FKTR+G TVKL ELLDE + R
Sbjct: 343 ALHFKQTEIVARKAGFIEPEQT-YEHCPFGMMLGSDGRPFKTRTGGTVKLVELLDEAVER 401

Query: 783 SLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAV 842
           +   L    R T+L+  EL      +  G +KYADLS NR  DY+FS+D ML   GNTA 
Sbjct: 402 AQALL--SKRETDLSTDELKVLANKIGIGAVKYADLSKNRTTDYMFSWDSMLSFEGNTAP 459

Query: 843 YLLYAYTRIASIARTAGIN 861
           YL YAYTR+ SI R AG++
Sbjct: 460 YLQYAYTRVMSIFRKAGVD 478



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T+L+  EL      +  G +KYADLS NR  DY+FS+D ML   GNTA YL YAYTR+
Sbjct: 409  RETDLSTDELKVLANKIGIGAVKYADLSKNRTTDYMFSWDSMLSFEGNTAPYLQYAYTRV 468

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI R AG++ + L  A     ++L+  +E  LA   L+  + +  V  +   H LC YL
Sbjct: 469  MSIFRKAGVDHKTLNAA-----ITLDAPQEKMLAVKQLQYVEAINQVIAEGTPHVLCTYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y++++ F  FY+ C  ++   EG    V   R+ LA  TAK ++    +L I T+ +M
Sbjct: 524  YELASLFMSFYEACPMLK---EGIAPEVRDSRMTLAALTAKTLQSGLSLLGIDTMERM 578



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 119/266 (44%), Gaps = 43/266 (16%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGD+Q N AMAL K+ K K     P DIA  I + V         L  + +K+E A PGF
Sbjct: 36  FGDYQFNGAMALAKVLKQK-----PRDIADKIVAAV--------ELDGIAEKLEVAGPGF 82

Query: 108 VNVFLSRVYAGEQMKDIIVNGVQPPTLN----KKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           +N++LS+ +   Q+ +   +    P LN    +   V+VD+SSPN+A++      HL + 
Sbjct: 83  INIYLSKDWLATQLSEAAAD----PRLNIETQRSKTVVVDYSSPNLAKE--MHVGHLRTT 136

Query: 164 IHDILISKAI---AEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDV--FTHA 218
           I    + KA+     +  +Q       +Q       +N  +         LSD+  F   
Sbjct: 137 IIGDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFYRE 196

Query: 219 VQVAFPELGDKTASVASTNEKYVHKF--GDFQCNDAMALCKIFKDKG-----EKKNPFDI 271
            +V F    D+    A    +YV K   GD  C   +AL + F D       E  +  ++
Sbjct: 197 AKVRF----DEEDGFADRAREYVVKLQGGDAHC---LALWQNFIDVSITHSEEVYDKLNV 249

Query: 272 AQSIASVVTSELATNPSLAKVIDKIE 297
           + + A ++  E A N  LA V+ +++
Sbjct: 250 SLTRADIM-GESAYNHDLANVVSELQ 274


>gi|145637830|ref|ZP_01793478.1| arginyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|145268973|gb|EDK08928.1| arginyl-tRNA synthetase [Haemophilus influenzae PittHH]
          Length = 577

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 214/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GSDQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K          + DL+AFY+E+KK +DEDEIF ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQHEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRTMWKRLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            DDG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 EDDGALVVYLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 144/355 (40%), Positives = 192/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K          +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQHEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEIFAEKARNYVVKLQSGDEYCRTMWKRLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVEDDGALVVYLDEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  126 bits (317), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    ++   RL LA  T K +K+   +L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SIKLSRLKLALLTEKTLKQGLTLLGIKTVEKM 577



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GSDQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|410643050|ref|ZP_11353555.1| arginyl-tRNA synthetase [Glaciecola chathamensis S18K6]
 gi|410137399|dbj|GAC11742.1| arginyl-tRNA synthetase [Glaciecola chathamensis S18K6]
          Length = 578

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/332 (42%), Positives = 199/332 (59%), Gaps = 29/332 (8%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGD+Q N AMAL K+ K K     P DIA  I + V         L  + +K+EVA PGF
Sbjct: 36  FGDYQFNGAMALAKVLKQK-----PRDIADKIVAAV--------ELDGIAEKLEVAGPGF 82

Query: 304 VNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLR----VLVDFSSPNIAKEMHVGHLRSTII 359
           +N++LS+ +   Q+ +   +    P LN + +    V+VD+SSPN+AKEMHVGHLR+TII
Sbjct: 83  INIYLSKDWLATQLSEAAAD----PRLNIETQPSKTVVVDYSSPNLAKEMHVGHLRTTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + + LE++GH V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY+E+K
Sbjct: 139 GDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFYREAK 198

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
            RFDE++ F  RA + VV LQ  D      W+   DVS    +++YD+LNV+LT     G
Sbjct: 199 VRFDEEDGFADRAREYVVKLQGGDAHCLALWQNFIDVSITHSEEVYDKLNVSLTRADIMG 258

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G ++++     +  G     IV KS GG+ Y T+D
Sbjct: 259 ESAYNHDLANVVSELQAKGLAVESEGAQVVFLPELADKEGKPAAYIVQKSGGGYLYATTD 318

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           LAA+R R ++  AD  + +TD  Q +HF+  E
Sbjct: 319 LAAVRYRNKQLHADRTLILTDARQALHFKQTE 350



 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 187/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +TIIGD + + LE++GH V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY
Sbjct: 135 TTIIGDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K RFDE++ F  RA + VV LQ  D      W+   DVS    +++YD+LNV+LT  
Sbjct: 195 REAKVRFDEEDGFADRAREYVVKLQGGDAHCLALWQNFIDVSITHSEEVYDKLNVSLTRA 254

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY------------------------- 716
              GES Y   +  +V  L+ KG    ++   +V+                         
Sbjct: 255 DIMGESAYNHDLANVVSELQAKGLAVESEGAQVVFLPELADKEGKPAAYIVQKSGGGYLY 314

Query: 717 ----------------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                                 +TD  Q +HF+  E  A+KAG + P +T  +   FG++
Sbjct: 315 ATTDLAAVRYRNKQLHADRTLILTDARQALHFKQTEIVARKAGFIEPEQT-YEHCPFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D + FKTR+G TVKL ELLDE + R+   L    R T+L+  EL      +  G +K
Sbjct: 374 LGSDGRPFKTRTGGTVKLVELLDEAVERAQALL--SKRETDLSTDELKVLANKIGIGAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+FS+D ML   GNTA YL YAYTR+ SI R AG++
Sbjct: 432 YADLSKNRTTDYMFSWDSMLSFEGNTAPYLQYAYTRVMSIFRKAGVD 478



 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T+L+  EL      +  G +KYADLS NR  DY+FS+D ML   GNTA YL YAYTR+
Sbjct: 409  RETDLSTDELKVLANKIGIGAVKYADLSKNRTTDYMFSWDSMLSFEGNTAPYLQYAYTRV 468

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI R AG++ + L  A     ++L+  +E  LA   L+  + +  V  +   H LC YL
Sbjct: 469  MSIFRKAGVDHKTLNAA-----ITLDAPQEKMLAVKQLQYVEAINQVIAEGTPHVLCTYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y++++ F  FY+ C  ++   EG    V   R+ LA  TAK ++    +L I T+ +M
Sbjct: 524  YELASLFMSFYEACPMLK---EGIAPEVRDSRMTLAALTAKTLQSGLSLLGIDTMERM 578



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 120/266 (45%), Gaps = 43/266 (16%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGD+Q N AMAL K+ K K     P DIA  I + V         L  + +K+E A PGF
Sbjct: 36  FGDYQFNGAMALAKVLKQK-----PRDIADKIVAAV--------ELDGIAEKLEVAGPGF 82

Query: 108 VNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLR----VLVDFSSPNIARKGGFLYPHLPSQ 163
           +N++LS+ +   Q+ +   +    P LN + +    V+VD+SSPN+A++      HL + 
Sbjct: 83  INIYLSKDWLATQLSEAAAD----PRLNIETQPSKTVVVDYSSPNLAKE--MHVGHLRTT 136

Query: 164 IHDILISKAI---AEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDV--FTHA 218
           I    + KA+     +  +Q       +Q       +N  +         LSD+  F   
Sbjct: 137 IIGDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFYRE 196

Query: 219 VQVAFPELGDKTASVASTNEKYVHKF--GDFQCNDAMALCKIFKDKG-----EKKNPFDI 271
            +V F    D+    A    +YV K   GD  C   +AL + F D       E  +  ++
Sbjct: 197 AKVRF----DEEDGFADRAREYVVKLQGGDAHC---LALWQNFIDVSITHSEEVYDKLNV 249

Query: 272 AQSIASVVTSELATNPSLAKVIDKIE 297
           + + A ++  E A N  LA V+ +++
Sbjct: 250 SLTRADIM-GESAYNHDLANVVSELQ 274


>gi|145635709|ref|ZP_01791404.1| arginyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145267032|gb|EDK07041.1| arginyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 577

 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 146/367 (39%), Positives = 215/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDEIF ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHANEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRTMWKRLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPSIVKDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D 
Sbjct: 280 ENDGALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  232 bits (592), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 192/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHANEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEIFAEKARNYVVKLQSGDEYCRTMWKRLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVKDLKKQGLAVENDGALVVYLDEFKNKEGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML    NTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFESNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 101/178 (56%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML    NTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFESNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS     A  + P++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINS----TALLAVPLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    ++   RL LA  T K +K+   +L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SIKLSRLKLALLTEKTLKQGLTLLGIKTVEKM 577



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|332140679|ref|YP_004426417.1| arginyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
 gi|410860886|ref|YP_006976120.1| arginyl-tRNA ligase [Alteromonas macleodii AltDE1]
 gi|238693246|sp|B4RU34.1|SYR_ALTMD RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|327550701|gb|AEA97419.1| arginyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
 gi|410818148|gb|AFV84765.1| arginyl-tRNA ligase [Alteromonas macleodii AltDE1]
          Length = 576

 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/377 (40%), Positives = 223/377 (59%), Gaps = 38/377 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++   L + FT A+Q    E+G + A V  +      +FG++Q N AMAL K  K K  
Sbjct: 1   MNIHALLVNRFTEALQ----EMGVENAPVPVSRSAR-PEFGEYQFNGAMALAKQLKQK-- 53

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ----IKDI 320
              P DIA+ I   V         L  +  K+EVA PGF+NV L+  +   Q    + D 
Sbjct: 54  ---PRDIAEKIVETV--------KLDDIASKLEVAGPGFINVHLNDAWLANQCELSLTDP 102

Query: 321 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
            +   + P  N    ++VD+SSPN+AKEMHVGHLR+TIIGD + ++LE+LGH+V+R NH+
Sbjct: 103 RLGIAKSPEQN----IVVDYSSPNLAKEMHVGHLRTTIIGDAVVKVLEFLGHNVIRQNHM 158

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGML+AHL DK  + + ++  ++DL+ FY+E+K RFDE+E F  RA + VV LQ
Sbjct: 159 GDWGTQFGMLLAHLSDKLQEEVAET-ALSDLEDFYREAKVRFDEEEGFADRAREYVVKLQ 217

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLL 497
             D      WE   DVS    +++YD+LNV+LT +   GES Y   +  ++  L+ KGL 
Sbjct: 218 GGDAQCLALWEKFIDVSITHSEEVYDKLNVSLTRKDIMGESAYNDDLANVISDLKTKGLA 277

Query: 498 ELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
             D G ++++     +  G+  + IV KS GG+ Y T+DLAA+R R  +  AD  + +TD
Sbjct: 278 VEDQGAQVVFIPELADKEGNPAVYIVQKSGGGYLYATTDLAAMRYRSGKLNADRTLILTD 337

Query: 553 LGQGVHFRLLEESTIIG 569
             Q +HF+   ++ I+G
Sbjct: 338 ARQALHFK---QTEIVG 351



 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 138/352 (39%), Positives = 196/352 (55%), Gaps = 54/352 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +TIIGD + ++LE+LGH+V+R NH+GDWGTQFGML+AHL DK  + + ++  ++DL+ FY
Sbjct: 134 TTIIGDAVVKVLEFLGHNVIRQNHMGDWGTQFGMLLAHLSDKLQEEVAET-ALSDLEDFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K RFDE+E F  RA + VV LQ  D      WE   DVS    +++YD+LNV+LT +
Sbjct: 193 REAKVRFDEEEGFADRAREYVVKLQGGDAQCLALWEKFIDVSITHSEEVYDKLNVSLTRK 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLGIVY-- 716
              GES Y   +  ++  L+ KG                        + + +K G  Y  
Sbjct: 253 DIMGESAYNDDLANVISDLKTKGLAVEDQGAQVVFIPELADKEGNPAVYIVQKSGGGYLY 312

Query: 717 ----------------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                                 +TD  Q +HF+  E   +KAG +   +T  +   FG++
Sbjct: 313 ATTDLAAMRYRSGKLNADRTLILTDARQALHFKQTEIVGRKAGFMKEEQT-YEHCPFGMM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D K FKTR+G TVKL ELLDE + R+   + +  R  +L+  EL E  + V  G +K
Sbjct: 372 LGSDGKPFKTRTGGTVKLVELLDEAVERAGKLIAE--RDNDLSEEELKEVARKVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
           YADLS NR  DY+F++D ML   GNTA YL YAYTR+ S+ R AG++    P
Sbjct: 430 YADLSKNRTTDYMFNWDSMLSFEGNTAPYLQYAYTRVKSLFRKAGVDMATMP 481



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R  +L+  EL E  + V  G +KYADLS NR  DY+F++D ML   GNTA YL YAYTR+
Sbjct: 407  RDNDLSEEELKEVARKVGIGAVKYADLSKNRTTDYMFNWDSMLSFEGNTAPYLQYAYTRV 466

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG++     +A     + L  ++E ALA  L++  +V+ +V+R+   H LC YL
Sbjct: 467  KSLFRKAGVD-----MATMPVDIKLVEKQEHALAVLLMQFEEVIGMVSREATPHVLCTYL 521

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD+++AF  FY+ C  ++   EG    V   RL L+   AK ++K   +L I T+ KM
Sbjct: 522  YDVASAFMTFYEACPMLK---EGIEPQVRDSRLALSALVAKTLEKGLTLLGIETLEKM 576



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 26/148 (17%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++   L + FT A+Q    E+G + A V  +      +FG++Q N AMAL K  K K  
Sbjct: 1   MNIHALLVNRFTEALQ----EMGVENAPVPVSRSAR-PEFGEYQFNGAMALAKQLKQK-- 53

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQ----MKDI 124
              P DIA+ I   V         L  +  K+E A PGF+NV L+  +   Q    + D 
Sbjct: 54  ---PRDIAEKIVETV--------KLDDIASKLEVAGPGFINVHLNDAWLANQCELSLTDP 102

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            +   + P  N    ++VD+SSPN+A++
Sbjct: 103 RLGIAKSPEQN----IVVDYSSPNLAKE 126


>gi|340058357|emb|CCC52712.1| putative arginyl-tRNA synthetase [Trypanosoma vivax Y486]
          Length = 692

 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 135/346 (39%), Positives = 207/346 (59%), Gaps = 27/346 (7%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           +V   L DV    +QVAFP +      +       + K  D+QCN+AM L K+       
Sbjct: 9   NVELLLKDVVRRTIQVAFPSISVPDILIT------LGKVTDYQCNNAMGLAKLLSTAAP- 61

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
             P  ++ S+   V  EL  +    ++I+  E    GF+N+ +  ++    +  ++  G+
Sbjct: 62  --PIKMSPSL---VGEELKKHLVSNEIIEMFEPTPQGFINITIKPLWISTSVSHVLREGI 116

Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
           +PP++ K+ +VLVDFSSPN+AKEMHVGHLRSTIIG+ ISRL E+  H+V R+NH+GDWGT
Sbjct: 117 RPPSVPKQ-KVLVDFSSPNVAKEMHVGHLRSTIIGEAISRLFEFCQHEVHRINHIGDWGT 175

Query: 386 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445
            FGMLI +++ + P+++++ P IADL  FYKE+KK FDED  FK++A   VV LQ  + +
Sbjct: 176 AFGMLILYMKRQHPNFISEMPDIADLTKFYKEAKKCFDEDPDFKEQARLQVVKLQSLEDE 235

Query: 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
             KAW++IC++SR++F  IYDRL V + ERGESFY   + +++  LE  G LE  +G KI
Sbjct: 236 SIKAWKIICEISRKEFSLIYDRLGVRIEERGESFYNPLIPKVLKLLEDAGKLEDSEGAKI 295

Query: 506 MWGEDRG-------------SIP-MTIVKSDGGFTYDTSDLAAIRQ 537
              +++              ++P +  V  DG  T+  + + A+R+
Sbjct: 296 AMLKEKKLVSDLEVKDMAKLAVPHLVTVHRDGKVTFSCNMIRAMRE 341



 Score =  159 bits (402), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 103/142 (72%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+ ISRL E+  H+V R+NH+GDWGT FGMLI +++ + P+++++ P IADL  FY
Sbjct: 146 STIIGEAISRLFEFCQHEVHRINHIGDWGTAFGMLILYMKRQHPNFISEMPDIADLTKFY 205

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KE+KK FDED  FK++A   VV LQ  + +  KAW++IC++SR++F  IYDRL V + ER
Sbjct: 206 KEAKKCFDEDPDFKEQARLQVVKLQSLEDESIKAWKIICEISRKEFSLIYDRLGVRIEER 265

Query: 685 GESFYQKHMEQLVPYLEKKGNL 706
           GESFY   + +++  LE  G L
Sbjct: 266 GESFYNPLIPKVLKLLEDAGKL 287



 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 5/154 (3%)

Query: 714 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 773
           ++Y TD+GQ  HF++  E  K  G ++         GFG+V+G D KK KTRSG++ KL 
Sbjct: 447 VIYCTDVGQLEHFKMCAEVVKDMGWMD--GATWSHAGFGLVMGADGKKIKTRSGESAKLK 504

Query: 774 ELLDEGLRRS---LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830
           +LLDE + RS   L + +D  R    T  E+ E  + +  G IKY DL  +R  DY F++
Sbjct: 505 DLLDEAVERSHAILVEREDGERAQGHTEEEMRELSKIIGIGAIKYFDLKQSRVSDYAFNY 564

Query: 831 DKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           DKMLD  GNTAV+LLY Y R+ SI R   +  E+
Sbjct: 565 DKMLDLTGNTAVFLLYQYARLCSIERKTSVGREE 598



 Score =  123 bits (309), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 98/182 (53%), Gaps = 11/182 (6%)

Query: 938  KDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYA 997
            +D  R    T  E+ E  + +  G IKY DL  +R  DY F++DKMLD  GNTAV+LLY 
Sbjct: 522  EDGERAQGHTEEEMRELSKIIGIGAIKYFDLKQSRVSDYAFNYDKMLDLTGNTAVFLLYQ 581

Query: 998  YTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHL 1057
            Y R+ SI R   +  E+      +T V ++  +E  LA   LRMN V++    DL LHHL
Sbjct: 582  YARLCSIERKTSVGREEF----LNTEVVIDTPQEKKLALCALRMNSVVLKTIDDLFLHHL 637

Query: 1058 CEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVH 1117
             ++ Y++ + FS+F+ NC  I         T+   RL L E T   +K+  DILNI    
Sbjct: 638  TDFAYELVSCFSDFFQNCKVIG-------HTLEKSRLCLVELTRITLKQVLDILNIEVAE 690

Query: 1118 KM 1119
            ++
Sbjct: 691  RI 692



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 13/143 (9%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           +V   L DV    +QVAFP +      +       + K  D+QCN+AM L K+       
Sbjct: 9   NVELLLKDVVRRTIQVAFPSISVPDILIT------LGKVTDYQCNNAMGLAKLLSTAAP- 61

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
             P  ++ S+   V  EL  +    ++I+  E    GF+N+ +  ++    +  ++  G+
Sbjct: 62  --PIKMSPSL---VGEELKKHLVSNEIIEMFEPTPQGFINITIKPLWISTSVSHVLREGI 116

Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
           +PP++ K+ +VLVDFSSPN+A++
Sbjct: 117 RPPSVPKQ-KVLVDFSSPNVAKE 138



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 6/89 (6%)

Query: 477 ESFYQKHMEQLV-PYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAI 535
           +  Y+K +  L     E  G+LE DD   I     R S P+ +VKSDGG+TYDT+D+ ++
Sbjct: 381 QPLYKKQLSPLFREAFEAAGVLE-DDVITI----PRFSFPLMLVKSDGGYTYDTTDITSM 435

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
             R   EK D ++Y TD+GQ  HF++  E
Sbjct: 436 YHRFVMEKMDRVIYCTDVGQLEHFKMCAE 464


>gi|410626602|ref|ZP_11337357.1| arginyl-tRNA synthetase [Glaciecola mesophila KMM 241]
 gi|410153849|dbj|GAC24126.1| arginyl-tRNA synthetase [Glaciecola mesophila KMM 241]
          Length = 578

 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/328 (42%), Positives = 193/328 (58%), Gaps = 21/328 (6%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGD+Q N AMAL K+ K K     P DIA+ I   V         L  + +K+EVA PGF
Sbjct: 36  FGDYQFNGAMALAKVLKQK-----PRDIAEKIVEAV--------ELDGIAEKLEVAGPGF 82

Query: 304 VNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 363
           +N++LS+ +   Q+ +   +            V+VD+SSPN+AKEMHVGHLR+TIIGD +
Sbjct: 83  INIYLSKAWLAAQLSEAAADTRLNIEAQPSKTVVVDYSSPNLAKEMHVGHLRTTIIGDAV 142

Query: 364 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 423
            + LE++GH V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY+E+K RFD
Sbjct: 143 VKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFYREAKVRFD 202

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFY 480
           E+E F  RA + VV LQ  D      W+   DVS    +++Y +LNV+LT     GES Y
Sbjct: 203 EEEGFADRAREYVVKLQGGDSHCLALWQNFIDVSITHSEEVYHKLNVSLTRDDIMGESAY 262

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAI 535
              +  +V  L+ KGL     G ++++     +  G+    IV KS GG+ Y T+DLAAI
Sbjct: 263 NHDLANVVNELQAKGLAVESQGAQVVFLPELADKEGNPAAYIVQKSGGGYLYATTDLAAI 322

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           R R ++  AD  + +TD  Q +HF+  E
Sbjct: 323 RHRNKQLHADRTLILTDARQALHFKQTE 350



 Score =  236 bits (602), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 190/354 (53%), Gaps = 53/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +TIIGD + + LE++GH V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY
Sbjct: 135 TTIIGDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K RFDE+E F  RA + VV LQ  D      W+   DVS    +++Y +LNV+LT  
Sbjct: 195 REAKVRFDEEEGFADRAREYVVKLQGGDSHCLALWQNFIDVSITHSEEVYHKLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
              GES Y   +  +V  L+ KG    ++   +V++                        
Sbjct: 255 DIMGESAYNHDLANVVNELQAKGLAVESQGAQVVFLPELADKEGNPAAYIVQKSGGGYLY 314

Query: 718 -----------------------TDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                                  TD  Q +HF+  E  A+KAG + P +T  +   FG++
Sbjct: 315 ATTDLAAIRHRNKQLHADRTLILTDARQALHFKQTELVARKAGFIEPEQT-YEHCPFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D + FKTR+G TVKL ELLDE + R+ + L  K R T+L+  EL      +  G +K
Sbjct: 374 LGNDGRPFKTRTGGTVKLVELLDEAVERA-EALLSK-RETDLSSDELKVLANKIGIGAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS NR  DY+FS+D ML   GNTA YL YAYTR+ SI R AG++ +    P
Sbjct: 432 YADLSKNRTTDYMFSWDSMLSFEGNTAPYLQYAYTRVMSIFRKAGVDHQTLNAP 485



 Score =  120 bits (302), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T+L+  EL      +  G +KYADLS NR  DY+FS+D ML   GNTA YL YAYTR+
Sbjct: 409  RETDLSSDELKVLANKIGIGAVKYADLSKNRTTDYMFSWDSMLSFEGNTAPYLQYAYTRV 468

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI R AG++ + L     + P+SL+  +E  LA   L+  + +  V  +   H LC YL
Sbjct: 469  MSIFRKAGVDHQTL-----NAPISLDAPQEKILAVKQLQYVEAINQVIAEGTPHVLCTYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y++++ F  FY+ C  ++   +G  + V   R+ LA  TAK ++    +L I T+ +M
Sbjct: 524  YELASLFMSFYEACPMLK---DGIEQDVRDSRMTLAALTAKTLQSGLSLLGIDTMERM 578



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 13/105 (12%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGD+Q N AMAL K+ K K     P DIA+ I   V         L  + +K+E A PGF
Sbjct: 36  FGDYQFNGAMALAKVLKQK-----PRDIAEKIVEAV--------ELDGIAEKLEVAGPGF 82

Query: 108 VNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           +N++LS+ +   Q+ +   +            V+VD+SSPN+A++
Sbjct: 83  INIYLSKAWLAAQLSEAAADTRLNIEAQPSKTVVVDYSSPNLAKE 127


>gi|342904392|ref|ZP_08726193.1| Arginyl-tRNA synthetase [Haemophilus haemolyticus M21621]
 gi|341953632|gb|EGT80136.1| Arginyl-tRNA synthetase [Haemophilus haemolyticus M21621]
          Length = 577

 Score =  251 bits (640), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 210/364 (57%), Gaps = 26/364 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTSEVSTALSQK 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                   K  V++D+SSPN+AKEMHVGHLRSTIIGD + R LE+LGH+V+R NHVGDWG
Sbjct: 104 NLGIKATDKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHNVIRANHVGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDE+F ++A   VV LQ  D 
Sbjct: 164 TQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEVFAEKARNYVVKLQGGDE 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDD 501
             +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL   DD
Sbjct: 223 YCRAMWKRLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVEDD 282

Query: 502 GRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D  Q 
Sbjct: 283 GALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQS 342

Query: 557 VHFR 560
            H +
Sbjct: 343 QHMQ 346



 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 192/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDE+F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEVFAEKARNYVVKLQGGDEYCRAMWKRLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVEDDGALVVYLDEFKNKEGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  130 bits (326), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A+    ++LE +KE ALA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAAS----LTLEDDKERALAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    +V   RL LA  T K +K+  ++L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SVKLSRLKLALLTEKTLKQGLELLGIKTVEKM 577



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 19/156 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTSEVSTALSQK 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                   K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIKATDKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|109897684|ref|YP_660939.1| arginyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|123064815|sp|Q15W53.1|SYR_PSEA6 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|109699965|gb|ABG39885.1| arginyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
          Length = 578

 Score =  251 bits (640), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/332 (42%), Positives = 197/332 (59%), Gaps = 29/332 (8%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGD+Q N AMAL K+ K K     P DIA+ I   V         L  + +K+EVA PGF
Sbjct: 36  FGDYQFNGAMALAKVLKQK-----PRDIAEKIVEAV--------ELDGIAEKLEVAGPGF 82

Query: 304 VNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLR----VLVDFSSPNIAKEMHVGHLRSTII 359
           +N++LS+ +   Q+     +    P LN + +    V+VD+SSPN+AKEMHVGHLR+TII
Sbjct: 83  INIYLSKEWLAAQLS----HAAADPRLNIESQPTKTVVVDYSSPNLAKEMHVGHLRTTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + + LE++GH V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY+E+K
Sbjct: 139 GDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFYREAK 198

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
            RFDE+E F  RA + VV LQ  D      W+   DVS    +++Y +LNV+LT     G
Sbjct: 199 VRFDEEEGFADRAREYVVKLQGGDSHCLALWQNFIDVSITHSEEVYHKLNVSLTRDDIMG 258

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL     G ++++     +  G+    IV KS GG+ Y T+D
Sbjct: 259 ESAYNHDLANVVSELQAKGLAVESQGAQVVFLPELADKEGNPAAYIVQKSGGGYLYATTD 318

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           LAAIR R ++  AD  + +TD  Q +HF+  E
Sbjct: 319 LAAIRHRNKQLHADRTLILTDARQALHFKQTE 350



 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 188/354 (53%), Gaps = 53/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +TIIGD + + LE++GH V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY
Sbjct: 135 TTIIGDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K RFDE+E F  RA + VV LQ  D      W+   DVS    +++Y +LNV+LT  
Sbjct: 195 REAKVRFDEEEGFADRAREYVVKLQGGDSHCLALWQNFIDVSITHSEEVYHKLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
              GES Y   +  +V  L+ KG    ++   +V++                        
Sbjct: 255 DIMGESAYNHDLANVVSELQAKGLAVESQGAQVVFLPELADKEGNPAAYIVQKSGGGYLY 314

Query: 718 -----------------------TDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                                  TD  Q +HF+  E  A+KAG + P +T  +   FG++
Sbjct: 315 ATTDLAAIRHRNKQLHADRTLILTDARQALHFKQTELVARKAGFIEPEQT-YEHCPFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D + FKTR+G TVKL ELLDE + R+   L    R T+L+  EL      +  G +K
Sbjct: 374 LGNDGRPFKTRTGGTVKLVELLDEAVERAETLLS--KRETDLSSDELKVLANKIGIGAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS NR  DY+FS+D ML   GNTA YL YAYTR+ SI R AG++ +    P
Sbjct: 432 YADLSKNRTTDYMFSWDSMLSFEGNTAPYLQYAYTRVMSIFRKAGVDHQTLNAP 485



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T+L+  EL      +  G +KYADLS NR  DY+FS+D ML   GNTA YL YAYTR+
Sbjct: 409  RETDLSSDELKVLANKIGIGAVKYADLSKNRTTDYMFSWDSMLSFEGNTAPYLQYAYTRV 468

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI R AG++ + L     + P+SL+  +E  LA   L+  + +  V  +   H LC YL
Sbjct: 469  MSIFRKAGVDHQTL-----NAPISLDAPQEKILAVKQLQYVEAINQVIAEGTPHVLCTYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y++++ F  FY+ C  ++   +G  + V   R+ LA  TAK ++    +L I T+ +M
Sbjct: 524  YELASLFMSFYEACPMLK---DGIEQDVRDSRMTLAALTAKTLQSGLSLLGIDTMERM 578



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 21/109 (19%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGD+Q N AMAL K+ K K     P DIA+ I   V         L  + +K+E A PGF
Sbjct: 36  FGDYQFNGAMALAKVLKQK-----PRDIAEKIVEAV--------ELDGIAEKLEVAGPGF 82

Query: 108 VNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLR----VLVDFSSPNIARK 152
           +N++LS+ +   Q+     +    P LN + +    V+VD+SSPN+A++
Sbjct: 83  INIYLSKEWLAAQLS----HAAADPRLNIESQPTKTVVVDYSSPNLAKE 127


>gi|373467410|ref|ZP_09558709.1| arginine--tRNA ligase [Haemophilus sp. oral taxon 851 str. F0397]
 gi|371758945|gb|EHO47701.1| arginine--tRNA ligase [Haemophilus sp. oral taxon 851 str. F0397]
          Length = 577

 Score =  250 bits (639), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 213/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEVSTALSQK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD + R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TDKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDE+F ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEVFAEKARNYVVKLQG 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRAMWKRLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            DDG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D 
Sbjct: 280 EDDGALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  232 bits (592), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 192/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDE+F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEVFAEKARNYVVKLQGGDEYCRAMWKRLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVEDDGALVVYLDEFKNKEGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++LE +KE ALA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTLEDDKERALAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    +V   RL LA  T K +K+  ++L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SVKLSRLKLALLTEKTLKQGLELLGIKTVEKM 577



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEVSTALSQK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TDKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|378697828|ref|YP_005179786.1| arginyl-tRNA synthetase [Haemophilus influenzae 10810]
 gi|301170344|emb|CBW29950.1| arginyl-tRNA synthetase [Haemophilus influenzae 10810]
          Length = 577

 Score =  250 bits (639), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 215/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVTRTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDEIF ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRTMWKRLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 ENDGALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  235 bits (599), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/355 (40%), Positives = 193/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVTRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEIFAEKARNYVVKLQSGDEYCRTMWKRLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVENDGALVVYLDEFKNKEGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    ++   RL LA  T K +K+   +L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SIKLSRLKLALLTEKTLKQGLTLLGIKTVEKM 577



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|260582207|ref|ZP_05850001.1| arginyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260094839|gb|EEW78733.1| arginyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 577

 Score =  250 bits (639), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 215/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDE+F ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEVFAEKARNYVVKLQG 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRAMWKRLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D 
Sbjct: 280 ENDGALVVYLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 193/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDE+F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEVFAEKARNYVVKLQGGDEYCRAMWKRLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVENDGALVVYLDEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKQAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 101/178 (56%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKQAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A     ++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAAL----LTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    ++   RL LA  T K +K+   +L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SIKLSRLKLALLTEKTLKQGLTLLGIKTVEKM 577



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|149911776|ref|ZP_01900381.1| arginyl-tRNA synthetase [Moritella sp. PE36]
 gi|149805164|gb|EDM65185.1| arginyl-tRNA synthetase [Moritella sp. PE36]
          Length = 584

 Score =  250 bits (639), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 228/408 (55%), Gaps = 41/408 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM + K       KKNP ++AQ I          N   + ++D+ E+A PGF+
Sbjct: 41  GDLATNLAMMMAK-----PAKKNPRELAQLIID--------NLPESDLVDRTEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIG 360
           N+FL++ +  +QI DI +      VQ  T      V+VD SSPN+AKEMHVGHLRS+IIG
Sbjct: 88  NIFLNQNWLAQQI-DIALEDDNLAVQKTTAPDT--VVVDLSSPNLAKEMHVGHLRSSIIG 144

Query: 361 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK 420
           D+++R LE LGH+V+R NHVGDWGTQFGML+A++++K  +    S  ++DL+ FY+ +K 
Sbjct: 145 DSVARTLELLGHNVIRQNHVGDWGTQFGMLLAYMEEKRAENAEISMQLSDLEVFYRAAKG 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE E F  RA + VV LQ  D +  K W+   DVS      IY RLNV LT    RGE
Sbjct: 205 RFDESEDFAIRAREMVVMLQSGDEECNKLWKEFNDVSLAHCHDIYKRLNVKLTRDDVRGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDL 532
           SFY   +  +V  LE +GLL   +G K ++      +D   +P+ I K+ GGF Y T+DL
Sbjct: 265 SFYNSDLHNVVSELEAQGLLTESNGAKCVFLDEFKNKDGDPLPVIIQKNGGGFLYATTDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFR----LLEESTIIGDTISRLLEYLGHDVVRLNH 588
           AA+R R +   A+ I+Y  D  Q +HF+    +++++  +    S  LE+LG   +    
Sbjct: 325 AAMRYRQQTLNANRIMYFVDQRQALHFQQVFSVVQKAGFVKPETS--LEHLGFGTMNGAD 382

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEI 636
              + T+ G  +     K  D LT++   A   A  K       EDE+
Sbjct: 383 GRPFKTRSGGTV-----KLVDLLTEAEERA--YALVKSKNPNLAEDEL 423



 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 138/340 (40%), Positives = 186/340 (54%), Gaps = 53/340 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+++R LE LGH+V+R NHVGDWGTQFGML+A++++K  +    S  ++DL+ FY
Sbjct: 140 SSIIGDSVARTLELLGHNVIRQNHVGDWGTQFGMLLAYMEEKRAENAEISMQLSDLEVFY 199

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K RFDE E F  RA + VV LQ  D +  K W+   DVS      IY RLNV LT  
Sbjct: 200 RAAKGRFDESEDFAIRAREMVVMLQSGDEECNKLWKEFNDVSLAHCHDIYKRLNVKLTRD 259

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             RGESFY   +  +V  LE +G L+                       + +K G     
Sbjct: 260 DVRGESFYNSDLHNVVSELEAQGLLTESNGAKCVFLDEFKNKDGDPLPVIIQKNGGGFLY 319

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              I+Y  D  Q +HF+ +    +KAG + P +T ++ +GFG +
Sbjct: 320 ATTDLAAMRYRQQTLNANRIMYFVDQRQALHFQQVFSVVQKAGFVKP-ETSLEHLGFGTM 378

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTRSG TVKL +LL E   R+   +K KN +  L   EL    + V    +K
Sbjct: 379 NGADGRPFKTRSGGTVKLVDLLTEAEERAYALVKSKNPN--LAEDELKHIARVVGISSVK 436

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           YADLS NR+ DY+F+FD ML   GNTA YLLYA TR+ SI
Sbjct: 437 YADLSKNRSSDYIFNFDSMLSFEGNTAPYLLYACTRVGSI 476



 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 101/180 (56%), Gaps = 7/180 (3%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K+++  L   EL    + V    +KYADLS NR+ DY+F+FD ML   GNTA YLLYA T
Sbjct: 412  KSKNPNLAEDELKHIARVVGISSVKYADLSKNRSSDYIFNFDSMLSFEGNTAPYLLYACT 471

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ SI       +E     A+   V L  +KE  LA  L++ N+++ LV +    + LC 
Sbjct: 472  RVGSIFNKVDAATEAKLATAK---VQLNEDKEQELAGKLIQFNEIVHLVAKRATPNTLCT 528

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     +   RL LA+ TAK +K+  D+L I T+ +M
Sbjct: 529  YLFELAGVFSSFYEACPILSTEDEA----IKLSRLKLAQLTAKTLKQGLDLLGIETLERM 584



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 22/120 (18%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM + K       KKNP ++AQ I          N   + ++D+ E A PGF+
Sbjct: 41  GDLATNLAMMMAK-----PAKKNPRELAQLIID--------NLPESDLVDRTEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN----GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           N+FL++ +  +Q+ DI +      VQ  T      V+VD SSPN+A++      HL S I
Sbjct: 88  NIFLNQNWLAQQI-DIALEDDNLAVQKTTAPDT--VVVDLSSPNLAKE--MHVGHLRSSI 142


>gi|71668488|ref|XP_821124.1| arginyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70886493|gb|EAN99273.1| arginyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 692

 Score =  249 bits (637), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/306 (41%), Positives = 190/306 (62%), Gaps = 17/306 (5%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE--KKNP 268
           L D+  HA++ AFP +      ++      + K  ++QCN+AM L K+        K +P
Sbjct: 14  LKDIVRHAMEKAFPTISTPEVLIS------LGKVTEYQCNNAMGLAKLLSKATPPMKMSP 67

Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPP 328
            ++ +        EL  N     +I++ E    GF+N+ + + +A   +  ++  G+QPP
Sbjct: 68  INVGE--------ELRKNLEENDLIERFEPTPQGFINIAIKQEWAATMVSRLLKMGIQPP 119

Query: 329 TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388
            +  K +VLVDFSSPNIAKEMHVGHLRSTIIG+TI RL E+ G +V R+NHVGDWGT FG
Sbjct: 120 IIPPK-KVLVDFSSPNIAKEMHVGHLRSTIIGETICRLFEFCGFEVHRINHVGDWGTAFG 178

Query: 389 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
           MLI +L+ + P++LT+ P I DL  FY+E+KK FDED  FK+ A   VV LQ  + +  +
Sbjct: 179 MLILYLKRQHPNFLTEMPDITDLTKFYREAKKCFDEDPKFKEEARLQVVKLQALENESIQ 238

Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWG 508
           AW++ICD+SR++F  IYDRL   + ERGESFY   + +++  L++ G LE   G K++  
Sbjct: 239 AWKIICDISRKEFSLIYDRLGTRIEERGESFYNPIIPRVLSLLQEAGKLEESSGAKLVIS 298

Query: 509 EDRGSI 514
           +++  I
Sbjct: 299 KEKKLI 304



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 101/142 (71%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+TI RL E+ G +V R+NHVGDWGT FGMLI +L+ + P++LT+ P I DL  FY
Sbjct: 146 STIIGETICRLFEFCGFEVHRINHVGDWGTAFGMLILYLKRQHPNFLTEMPDITDLTKFY 205

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK FDED  FK+ A   VV LQ  + +  +AW++ICD+SR++F  IYDRL   + ER
Sbjct: 206 REAKKCFDEDPKFKEEARLQVVKLQALENESIQAWKIICDISRKEFSLIYDRLGTRIEER 265

Query: 685 GESFYQKHMEQLVPYLEKKGNL 706
           GESFY   + +++  L++ G L
Sbjct: 266 GESFYNPIIPRVLSLLQEAGKL 287



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 93/154 (60%), Gaps = 5/154 (3%)

Query: 714 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 773
           +VY TD+GQ  HFR+  + AK  G +       D  GFG+V G D KK KTRSG+T KL 
Sbjct: 447 VVYCTDVGQYEHFRMCAQLAKDMGWMG--DATWDHAGFGLVTGADGKKIKTRSGETAKLK 504

Query: 774 ELLDEGLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830
           +LLDE + RS+  L+++    R    T  E+    + +  G IKY DL  +R  DY FS+
Sbjct: 505 DLLDEAVERSIAILEEREGGERSQGHTKEEMETLSKIIGIGAIKYFDLKQSRVNDYAFSY 564

Query: 831 DKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           DKMLD  GNTAV+LLY Y R+ SI R A ++ ++
Sbjct: 565 DKMLDMSGNTAVFLLYQYARLCSIKRKANVSEDE 598



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 102/194 (52%), Gaps = 14/194 (7%)

Query: 929  GLRRSLDKLKDKN---RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
             + RS+  L+++    R    T  E+    + +  G IKY DL  +R  DY FS+DKMLD
Sbjct: 510  AVERSIAILEEREGGERSQGHTKEEMETLSKIIGIGAIKYFDLKQSRVNDYAFSYDKMLD 569

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTAV+LLY Y R+ SI R A + SED  + A+   ++   EK  AL     RM  VL
Sbjct: 570  MSGNTAVFLLYQYARLCSIKRKANV-SEDEFMKAEVV-INTPQEKRLALCA--FRMESVL 625

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
            +    DL  HHL ++ Y++ + FS+F+ NC  +          +   RL L E T   +K
Sbjct: 626  LKTVEDLFPHHLTDFAYELVSCFSDFFQNCKVVG-------DPMQNSRLCLVELTRITLK 678

Query: 1106 KCFDILNIRTVHKM 1119
            K FDILNI    ++
Sbjct: 679  KVFDILNIEATERI 692



 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 17/140 (12%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE--KKNP 72
           L D+  HA++ AFP +      ++      + K  ++QCN+AM L K+        K +P
Sbjct: 14  LKDIVRHAMEKAFPTISTPEVLIS------LGKVTEYQCNNAMGLAKLLSKATPPMKMSP 67

Query: 73  FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPP 132
            ++ +        EL  N     +I++ E    GF+N+ + + +A   +  ++  G+QPP
Sbjct: 68  INVGE--------ELRKNLEENDLIERFEPTPQGFINIAIKQEWAATMVSRLLKMGIQPP 119

Query: 133 TLNKKLRVLVDFSSPNIARK 152
            +  K +VLVDFSSPNIA++
Sbjct: 120 IIPPK-KVLVDFSSPNIAKE 138



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 14/106 (13%)

Query: 457 SRRDFQKIYDRLNVTLTERGESFYQKHMEQLV-PYLEKKGLLELDDGRKIMWGEDRGSIP 515
           +R D  KI  +L        E +Y+  +  L     E  G+    DG  I     R + P
Sbjct: 369 ARTDIDKIVPKL--------EPYYKNQLSPLFREVFEAAGI---TDGDTI--AVPRFNFP 415

Query: 516 MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           + + KSDGGFTYDT+D+ ++  R   EK D +VY TD+GQ  HFR+
Sbjct: 416 LILQKSDGGFTYDTTDVTSMYHRFVMEKMDRVVYCTDVGQYEHFRM 461


>gi|417842785|ref|ZP_12488865.1| Arginyl-tRNA synthetase [Haemophilus haemolyticus M21127]
 gi|341950946|gb|EGT77527.1| Arginyl-tRNA synthetase [Haemophilus haemolyticus M21127]
          Length = 577

 Score =  249 bits (637), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 213/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTSEVSTALSQK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD + R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TDKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDE+F ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEVFAEKARNYVVKLQG 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRAMWKRLVDITMQQNQYNYDRLNVTLTEKDVMGESLYNPMLPGIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            DDG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D 
Sbjct: 280 EDDGALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 192/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDE+F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEVFAEKARNYVVKLQGGDEYCRAMWKRLVDITMQQNQYNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPGIVEDLKKQGLAVEDDGALVVYLDEFKNKEGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  133 bits (334), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++LE +KE ALA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTLEDDKERALAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    +V   RL LA  T K +K+  ++L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SVKLSRLKLALLTEKTLKQGLELLGIKTVEKM 577



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTSEVSTALSQK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TDKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|407789729|ref|ZP_11136828.1| arginyl-tRNA ligase [Gallaecimonas xiamenensis 3-C-1]
 gi|407205936|gb|EKE75899.1| arginyl-tRNA ligase [Gallaecimonas xiamenensis 3-C-1]
          Length = 578

 Score =  249 bits (637), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 156/407 (38%), Positives = 223/407 (54%), Gaps = 35/407 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K        +NP + AQ        +L  N  L  + DK+E+A PG
Sbjct: 35  EFGDYQANGVMGAAKRMG-----QNPREFAQ--------KLLDNLELDGIADKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  EQ +  + +     +      V+VD+SSPN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLKPQWLAEQAEKALADAALAVSKPAAQTVVVDYSSPNLAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAFYKESKKR 421
           + R LE+LGH VVR NHVGDWGTQFGML+A+L+ +  +  +++   ++DL+ FY+ +K  
Sbjct: 142 VVRTLEFLGHKVVRQNHVGDWGTQFGMLLAYLEKQKAEGKSQAEMGLSDLEVFYRAAKGC 201

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GES 478
           FDEDE F  RA + VV LQ  D    K W    D+S     ++Y +LNV+LT +   GES
Sbjct: 202 FDEDEAFANRARELVVQLQGGDQACLKMWREFNDISLAHCHEVYHKLNVSLTRQDVMGES 261

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + Q+V  LE KGLL  D G K ++      +D   +P+ I K+ GG+ Y T+DLA
Sbjct: 262 AYNADLAQVVSDLEAKGLLVEDQGAKCVFLDEFKNKDGSILPIIIQKAGGGYLYATTDLA 321

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFR----LLEESTIIGDTISRLLEYLGHDVVRLNHV 589
           A+R R    KAD  +Y  D  Q +HF+    L  ++  + D +S  LE++G   +     
Sbjct: 322 AMRYRNNVLKADRALYFVDQRQALHFKQVFTLAHKAGFVRDALS--LEHMGFGTMNGEDG 379

Query: 590 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEI 636
             + T+ G  +     K  D L ++   A      KE    FDE E+
Sbjct: 380 KPFKTRSGGTV-----KLIDLLVEAEDKA--YQLVKERNSDFDEAEL 419



 Score =  232 bits (592), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 142/355 (40%), Positives = 194/355 (54%), Gaps = 54/355 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAF 623
           STIIGD + R LE+LGH VVR NHVGDWGTQFGML+A+L+ +  +  +++   ++DL+ F
Sbjct: 135 STIIGDAVVRTLEFLGHKVVRQNHVGDWGTQFGMLLAYLEKQKAEGKSQAEMGLSDLEVF 194

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K  FDEDE F  RA + VV LQ  D    K W    D+S     ++Y +LNV+LT 
Sbjct: 195 YRAAKGCFDEDEAFANRARELVVQLQGGDQACLKMWREFNDISLAHCHEVYHKLNVSLTR 254

Query: 684 R---GESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG---- 713
           +   GES Y   + Q+V  LE KG L                        + +K G    
Sbjct: 255 QDVMGESAYNADLAQVVSDLEAKGLLVEDQGAKCVFLDEFKNKDGSILPIIIQKAGGGYL 314

Query: 714 --------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                +Y  D  Q +HF+ +   A KAG +  +   ++ +GFG 
Sbjct: 315 YATTDLAAMRYRNNVLKADRALYFVDQRQALHFKQVFTLAHKAGFVR-DALSLEHMGFGT 373

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED K FKTRSG TVKL +LL E   ++   +K++N  ++    EL E   AV  G +
Sbjct: 374 MNGEDGKPFKTRSGGTVKLIDLLVEAEDKAYQLVKERN--SDFDEAELREIAHAVGIGAV 431

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           KYADLS +R+ DY+FSFD ML   GNTA Y+LYAYTR+ASI R AGI++     P
Sbjct: 432 KYADLSKHRSSDYIFSFDAMLSFEGNTAPYMLYAYTRVASIFRKAGIDAASLSAP 486



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 111/180 (61%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K R+++    EL E   AV  G +KYADLS +R+ DY+FSFD ML   GNTA Y+LYAYT
Sbjct: 408  KERNSDFDEAELREIAHAVGIGAVKYADLSKHRSSDYIFSFDAMLSFEGNTAPYMLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI R AGI++  L     S P+ L   +E ALA+ LL+  + +  V R+   H+LC 
Sbjct: 468  RVASIFRKAGIDAASL-----SAPLLLAEPQEKALAQKLLQFEETIESVVREGAPHYLCL 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + EG    V   RL LA  TA+ +K+  D+L I+T+ +M
Sbjct: 523  YLFELAGLFSGFYEACPILSSEDEG----VKGSRLKLAHLTARTLKQGLDLLGIKTLERM 578



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K        +NP + AQ        +L  N  L  + DK+E A PG
Sbjct: 35  EFGDYQANGVMGAAKRMG-----QNPREFAQ--------KLLDNLELDGIADKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ +  + +     +      V+VD+SSPN+A++
Sbjct: 82  FINIFLKPQWLAEQAEKALADAALAVSKPAAQTVVVDYSSPNLAKE 127


>gi|68249833|ref|YP_248945.1| arginyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|81335742|sp|Q4QL12.1|SYR_HAEI8 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|68058032|gb|AAX88285.1| arginyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
          Length = 577

 Score =  249 bits (636), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 215/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMVIA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQATN---KQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDEIF ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  Y+RLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRTMWKRLVDITMQQNQHNYNRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 ENDGALVVYLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/355 (39%), Positives = 193/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  Y+RL
Sbjct: 187 QDLEAFYREAKKHYDEDEIFAEKARNYVVKLQSGDEYCRTMWKRLVDITMQQNQHNYNRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVENDGALVVYLDEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LL+E + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLNEAIERATVLINEKN--TNLSNDEKQAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           +  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 IGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +A+  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKQAVIEAIGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    ++   RL LA  T K +K+   +L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAENE----SIKLSRLKLALLTEKTLKQGLTLLGIKTVEKM 577



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMVIA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|170728748|ref|YP_001762774.1| arginyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|238688680|sp|B1KK48.1|SYR_SHEWM RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|169814095|gb|ACA88679.1| arginyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 581

 Score =  249 bits (636), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 149/365 (40%), Positives = 214/365 (58%), Gaps = 32/365 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L KI      +KNP +IAQ I       + + P  A+V  K+E+A PGF+
Sbjct: 41  GDFATNLAMMLTKI-----ARKNPREIAQLI-------IDSLPEDAQV-SKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F+       Q+   + +      L +   V+VD+SSPN+AKEMHVGHLRSTIIGD++ 
Sbjct: 88  NFFIDDSALANQLMTALNDDRLGIALPQAQTVVVDYSSPNLAKEMHVGHLRSTIIGDSVV 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAFYKESKKRFD 423
           R LE++GH V+R NHVGDWGTQFGML+A++++       ++   ++DL+ FY+ +K RFD
Sbjct: 148 RALEFMGHKVIRQNHVGDWGTQFGMLLAYMEELRAQSGEQAQMELSDLETFYRAAKVRFD 207

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFY 480
           E E F  RA + VVALQ  D    K W    D+S     ++Y+RL V+LT    RGES Y
Sbjct: 208 ESEEFATRARKLVVALQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTRADVRGESAY 267

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAI 535
              + Q+V  L+ +GLL   +G K+++ ++  +     +P+ I K+DGG+ Y TSD+AA+
Sbjct: 268 NDDLAQVVRDLDSQGLLSESNGAKVVFQDEFKNKEGEPLPVIIQKADGGYLYATSDMAAM 327

Query: 536 RQRIEEEKADWIVYVTDLGQGVH----FRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           R R    KAD  +Y  DL Q +H    F+L  ++  + D IS  LE++G   +     GD
Sbjct: 328 RYRANVLKADRALYFVDLRQALHFQQVFKLARKANFVDDNIS--LEHMGFGTMN----GD 381

Query: 592 WGTQF 596
            G  F
Sbjct: 382 DGRPF 386



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/345 (38%), Positives = 191/345 (55%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAF 623
           STIIGD++ R LE++GH V+R NHVGDWGTQFGML+A++++       ++   ++DL+ F
Sbjct: 139 STIIGDSVVRALEFMGHKVIRQNHVGDWGTQFGMLLAYMEELRAQSGEQAQMELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE E F  RA + VVALQ  D    K W    D+S     ++Y+RL V+LT 
Sbjct: 199 YRAAKVRFDESEEFATRARKLVVALQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV------------------------- 715
              RGES Y   + Q+V  L+ +G LS +    +V                         
Sbjct: 259 ADVRGESAYNDDLAQVVRDLDSQGLLSESNGAKVVFQDEFKNKEGEPLPVIIQKADGGYL 318

Query: 716 ----------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                 Y  DL Q +HF+ + + A+KA  ++ N + ++ +GFG 
Sbjct: 319 YATSDMAAMRYRANVLKADRALYFVDLRQALHFQQVFKLARKANFVDDNIS-LEHMGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + G+D + FKTRSG  VKL +LL E   R+L+ ++ KN   ++   EL++  + V    +
Sbjct: 378 MNGDDGRPFKTRSGGVVKLVDLLSEADTRALELVRSKN--PDMDEAELAKIAKVVGISSV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRASDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 109/188 (57%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++   EL++  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEAELAKIAKVVGISSVKYADLSKNRASDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I + A        V      + LEHEKE  L   L + N+VL  +   
Sbjct: 464  PYLLYAYTRVAGIFKRA------TDVDLSDAKIQLEHEKEKELGTKLAQFNEVLTRMVSK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YL++++ AFS FY+ C  +  D E + K+    RLLLA+ TAK +K+   +L
Sbjct: 518  GQPHALCGYLFELAGAFSSFYEACPVLAADTEEQKKS----RLLLAKLTAKTLKQGLGLL 573

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 574  GIETLERM 581



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 15/116 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L KI      +KNP +IAQ I       + + P  A+V  K+E A PGF+
Sbjct: 41  GDFATNLAMMLTKI-----ARKNPREIAQLI-------IDSLPEDAQV-SKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           N F+       Q+   + +      L +   V+VD+SSPN+A++      HL S I
Sbjct: 88  NFFIDDSALANQLMTALNDDRLGIALPQAQTVVVDYSSPNLAKE--MHVGHLRSTI 141


>gi|157373673|ref|YP_001472273.1| arginyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
 gi|189083550|sp|A8FQM2.1|SYR_SHESH RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|157316047|gb|ABV35145.1| Arginine--tRNA ligase [Shewanella sediminis HAW-EB3]
          Length = 581

 Score =  249 bits (635), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 150/365 (41%), Positives = 217/365 (59%), Gaps = 37/365 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K+      +KNP ++AQ    ++   L  +  +AKV    E+A PGF+
Sbjct: 41  GDFATNLAMMLTKV-----ARKNPRELAQ----LIIDSLPQDSQVAKV----EIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F+       Q+   + +   G+Q P   +   V+VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFIDENALASQLMAALNDDHLGIQLP---EPQTVVVDYSSPNLAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKK 420
           ++ R LE+ GH+V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K 
Sbjct: 145 SVVRALEFQGHNVIRQNHVGDWGTQFGMLLAYMEELRAENGEQAQMELSDLETFYRAAKV 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE E F  RA + VV+LQ  D    K W    D+S      +Y+RL V+LT    RGE
Sbjct: 205 RFDESEDFAIRARKLVVSLQSGDEYCNKLWREFNDISLSHCHDVYERLGVSLTRKDVRGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           S Y   +EQ+V  L+ KGLL   +G K+++ +     D   +P+ I K+DGG+ Y TSDL
Sbjct: 265 STYNDDLEQVVKDLDAKGLLSESNGAKVVFQDEFKTKDGDPLPVIIQKADGGYLYATSDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           AA+R R    KAD  +Y  DL QG+HF+ + +       ++R  E++  D + L H+G +
Sbjct: 325 AAMRYRSNVLKADRALYFVDLRQGLHFQQVFK-------LARTAEFINPD-MSLEHMG-F 375

Query: 593 GTQFG 597
           GT  G
Sbjct: 376 GTMNG 380



 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 134/345 (38%), Positives = 191/345 (55%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE+ GH+V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRALEFQGHNVIRQNHVGDWGTQFGMLLAYMEELRAENGEQAQMELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE E F  RA + VV+LQ  D    K W    D+S      +Y+RL V+LT 
Sbjct: 199 YRAAKVRFDESEDFAIRARKLVVSLQSGDEYCNKLWREFNDISLSHCHDVYERLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV------------------------- 715
              RGES Y   +EQ+V  L+ KG LS +    +V                         
Sbjct: 259 KDVRGESTYNDDLEQVVKDLDAKGLLSESNGAKVVFQDEFKTKDGDPLPVIIQKADGGYL 318

Query: 716 ----------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                 Y  DL QG+HF+ + + A+ A  +NP+ + ++ +GFG 
Sbjct: 319 YATSDLAAMRYRSNVLKADRALYFVDLRQGLHFQQVFKLARTAEFINPDMS-LEHMGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + G+D + FKTRSG  VKL +LL E   R+L+ ++ KN   ++   EL +  + V    +
Sbjct: 378 MNGDDGRPFKTRSGGVVKLVDLLTEADTRALELVRSKN--PDMDQAELEKIAKVVGISSV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRASDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 14/189 (7%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++   EL +  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDQAELEKIAKVVGISSVKYADLSKNRASDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASI-ARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
             YLLYAYTR+A I  R   I+  D +       + L+H+KE  L   L +  +VL  +  
Sbjct: 464  PYLLYAYTRVAGIFKRATDIDLSDAK-------MQLDHDKEKDLGNKLAQFGEVLSRMVT 516

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H LC YL++++ AFS FY+ C  +  ++E + K+    RLLL++ TAK +K+  D+
Sbjct: 517  KGQPHALCGYLFELAGAFSSFYEACPVLAAESEEQKKS----RLLLSQLTAKTLKQGLDL 572

Query: 1111 LNIRTVHKM 1119
            L I T+ +M
Sbjct: 573  LGIETLERM 581



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 19/107 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K+      +KNP ++AQ    ++   L  +  +AKV    E A PGF+
Sbjct: 41  GDFATNLAMMLTKV-----ARKNPRELAQ----LIIDSLPQDSQVAKV----EIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F+       Q+   + +   G+Q P   +   V+VD+SSPN+A++
Sbjct: 88  NFFIDENALASQLMAALNDDHLGIQLP---EPQTVVVDYSSPNLAKE 131


>gi|417845459|ref|ZP_12491487.1| Arginyl-tRNA synthetase [Haemophilus haemolyticus M21639]
 gi|341955029|gb|EGT81494.1| Arginyl-tRNA synthetase [Haemophilus haemolyticus M21639]
          Length = 577

 Score =  248 bits (634), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 212/367 (57%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEVSTALSQK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD + R LE+LGH ++R NHVG
Sbjct: 104 NLGIQA---TDKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHHIIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDE+F ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEVFAEKARNYVVKLQG 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRAMWKRLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            DDG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D 
Sbjct: 280 EDDGALVVYLDEFKNKEGDPMGVIIQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 193/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH ++R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHHIIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDE+F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEVFAEKARNYVVKLQGGDEYCRAMWKRLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLTE+   GES Y   +  +V  L+K+G                         + + K
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVEDDGALVVYLDEFKNKEGDPMGVIIQK 306

Query: 711 K-LGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAMKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 103/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAMKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P +LE +KE ALA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PFTLEDDKERALAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    +V   RL LA  T K +K+  ++L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SVKLSRLKLALLTEKTLKQGLELLGIKTVEKM 577



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEVSTALSQK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TDKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|417842091|ref|ZP_12488186.1| Arginyl-tRNA synthetase [Haemophilus haemolyticus M19501]
 gi|341947871|gb|EGT74512.1| Arginyl-tRNA synthetase [Haemophilus haemolyticus M19501]
          Length = 577

 Score =  248 bits (634), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 213/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEVSTALSQK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD + R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TDKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DED++F ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELHDLEAFYREAKKHYDEDKVFAEKARNYVVKLQG 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRAMWKRLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            DDG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D 
Sbjct: 280 EDDGALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 142/355 (40%), Positives = 192/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DED++F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 HDLEAFYREAKKHYDEDKVFAEKARNYVVKLQGGDEYCRAMWKRLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVEDDGALVVYLDEFKNKEGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++LE +KE ALA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTLEEDKERALAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    +V   RL LA  T K +K+  ++L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SVKLSRLKLALLTEKTLKQGLELLGIKTVEKM 577



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEVSTALSQK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TDKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|386312262|ref|YP_006008427.1| arginyl-tRNA synthetase [Shewanella putrefaciens 200]
 gi|319424887|gb|ADV52961.1| arginyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 581

 Score =  248 bits (634), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 155/398 (38%), Positives = 232/398 (58%), Gaps = 44/398 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K+       KNP ++AQ I       + T P+ A  + K+E+A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKNPRELAQLI-------IDTLPASA-FVAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F++     EQ+++ + +   G++ PT      V+VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFINDSALAEQLQNAVNDEHLGIKLPTPQT---VVVDYSSPNLAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKK 420
           ++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K 
Sbjct: 145 SVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEQAHLELSDLETFYRAAKL 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y RL V+LT     GE
Sbjct: 205 RFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYARLGVSLTRADVHGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           S Y   +EQ+V  L+ +GLL   +G K+++ E     +  ++P+ I K+DGG+ Y TSDL
Sbjct: 265 SAYNADLEQVVKDLDAQGLLTESNGAKVVFQEAFRNKEGEALPVIIQKADGGYLYATSDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           AA+R R    KAD ++Y  DL Q +HF+ +        ++++L +++  D + L H+G +
Sbjct: 325 AAMRYRSNVLKADRVLYFVDLRQALHFQQV-------FSLAKLAKFVRED-MSLEHLG-F 375

Query: 593 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           GT  G      +D  P + T+S  +  L    +E+  R
Sbjct: 376 GTMNG------EDGRP-FKTRSGGVVKLVDLLEEANVR 406



 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 133/349 (38%), Positives = 188/349 (53%), Gaps = 55/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEQAHLELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y RL V+LT 
Sbjct: 199 YRAAKLRFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYARLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLS--------------------------------- 707
               GES Y   +EQ+V  L+ +G L+                                 
Sbjct: 259 ADVHGESAYNADLEQVVKDLDAQGLLTESNGAKVVFQEAFRNKEGEALPVIIQKADGGYL 318

Query: 708 --------------LTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                         + K   ++Y  DL Q +HF+ +   AK A  +  + + ++ +GFG 
Sbjct: 319 YATSDLAAMRYRSNVLKADRVLYFVDLRQALHFQQVFSLAKLAKFVREDMS-LEHLGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTRSG  VKL +LL+E   R+L+ ++ KN   ++    L+E  + V    +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLVDLLEEANVRALELVRSKN--PDMDEETLAEIARVVGISAV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI-ARTAGIN 861
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTRIA I  R  G++
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRIAGIFKRVTGLD 484



 Score =  126 bits (316), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/189 (40%), Positives = 109/189 (57%), Gaps = 14/189 (7%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++    L+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEETLAEIARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASI-ARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
             YLLYAYTRIA I  R  G+   DL  A     + LEHEKE  L   L +  ++L  V  
Sbjct: 464  PYLLYAYTRIAGIFKRVTGL---DLSQA----KIVLEHEKEKDLGNKLAQFGEILNRVVD 516

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H LC YLY+++ AFS FY+ C  +  D + +       RLLL++ TA+ ++K  ++
Sbjct: 517  KGQPHVLCAYLYELAGAFSSFYEACPVLAADNDEQ----KNSRLLLSQLTARTLQKGLNL 572

Query: 1111 LNIRTVHKM 1119
            L I T+ +M
Sbjct: 573  LGIETLERM 581



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 19/107 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K+       KNP ++AQ I       + T P+ A  + K+E A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKNPRELAQLI-------IDTLPASA-FVAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F++     EQ+++ + +   G++ PT      V+VD+SSPN+A++
Sbjct: 88  NFFINDSALAEQLQNAVNDEHLGIKLPTPQT---VVVDYSSPNLAKE 131


>gi|260767651|ref|ZP_05876586.1| arginyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260617160|gb|EEX42344.1| arginyl-tRNA synthetase [Vibrio furnissii CIP 102972]
          Length = 577

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 154/424 (36%), Positives = 230/424 (54%), Gaps = 38/424 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  ++D  + A++ A    G  T S A+  +    +FGD+Q N  M + K       
Sbjct: 1   MNIQALINDKVSQALEAA----GAPTGSPAAVRQSAKPQFGDYQANGVMGVAKQLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ +  V+         L  +  K E+A PGF+N+FLS  +  +Q    + + 
Sbjct: 53  -TNPREFAQKVIDVL--------DLDGIASKTEIAGPGFINIFLSEEFLAKQADAALADE 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                   +  ++ D+S+PN+AKEMHVGHLRSTIIGD + R LE+LGH V+R NH+GDWG
Sbjct: 104 RLGVAKEAQQTIVADYSAPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHKVIRANHIGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+    +    S  ++DL+AFY+ESKK +DED  F +RA   VV LQ  D 
Sbjct: 164 TQFGMLIANLERVQQESGEVSMELSDLEAFYRESKKLYDEDAEFAERARNYVVKLQGGDA 223

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDD 501
                W+ + DV+    Q+ YDRLNV+LT     GES Y   +  +V  L++KGL + DD
Sbjct: 224 FCLDMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESMYNDMLPGIVADLKEKGLAQEDD 283

Query: 502 GRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G ++++ E+   +   PM ++  K DGGF Y T+D+A  + R E   AD ++Y  D  Q 
Sbjct: 284 GAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIACAKYRYETLGADRVLYFIDSRQ- 342

Query: 557 VHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 616
            H  L++  TI+     R   Y+  +V   +H       FGM++      F      +  
Sbjct: 343 -HQHLMQAWTIV-----RKAGYVPEEVTLEHHA------FGMMLGKDGRPFKTRAGGTVR 390

Query: 617 IADL 620
           +ADL
Sbjct: 391 LADL 394



 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/357 (37%), Positives = 190/357 (53%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ESKK +DED  F +RA   VV LQ  D      W+ + DV+    Q+ YDRL
Sbjct: 188 SDLEAFYRESKKLYDEDAEFAERARNYVVKLQGGDAFCLDMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   +  +V  L++KG                         + + K
Sbjct: 248 NVSLTRDDVMGESMYNDMLPGIVADLKEKGLAQEDDGAQVVFLEEFKNKDGEPMGVIIQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P +  ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PEEVTLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   +L   E ++    
Sbjct: 367 HHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PDLGADEKADIATT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG++ ++
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGVSPDN 481



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 105/180 (58%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ +L   E ++    VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPDLGADEKADIATTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG++ ++L     +  + +  EKE AL   LL+  + +  V+R+   H LC 
Sbjct: 467  RVASIFAKAGVSPDNL-----TGDIKITEEKEKALIAKLLQFEEAVQSVSREGQPHILCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L I+T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILIAEDE----SVKQSRLKLAALTAKTIKQGLSLLGIKTLERM 577



 Score = 59.7 bits (143), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 19/156 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  ++D  + A++ A    G  T S A+  +    +FGD+Q N  M + K       
Sbjct: 1   MNIQALINDKVSQALEAA----GAPTGSPAAVRQSAKPQFGDYQANGVMGVAKQLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ +  V+         L  +  K E A PGF+N+FLS  +  +Q    + + 
Sbjct: 53  -TNPREFAQKVIDVL--------DLDGIASKTEIAGPGFINIFLSEEFLAKQADAALADE 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                   +  ++ D+S+PN+A++      HL S I
Sbjct: 104 RLGVAKEAQQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|331007404|ref|ZP_08330588.1| Arginyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330418782|gb|EGG93264.1| Arginyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 582

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 159/387 (41%), Positives = 217/387 (56%), Gaps = 37/387 (9%)

Query: 205 MSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++R+ LSD  T A+  A  P   +  A VA++ +     FGD+Q N AM   KI K K 
Sbjct: 1   MNIRNLLSDYVTQAMLAAGLP--AECQAHVAASKKA---GFGDYQANGAMGAAKIAKAK- 54

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
               P DIAQ I      +L  N  +  +I  IE+A PGF+N+ L   +    I+  I+N
Sbjct: 55  ----PRDIAQQI----VDQLQQNSDVQVMISHIEIAGPGFINLTLDPQWLAANIR--IIN 104

Query: 324 -----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
                G+Q    ++   V+VD+SSPN+AKEMHVGHLRS+IIGD + R LE+ GH+VVR N
Sbjct: 105 QDKQLGIQD---DQPQTVVVDYSSPNLAKEMHVGHLRSSIIGDAVVRTLEFQGHNVVRQN 161

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA L+++  +  + S  + DL+ FY+ SKK FDE E F  +A   VV 
Sbjct: 162 HVGDWGTQFGMLIAELEEQLQEGESASLALKDLEGFYQSSKKHFDESEAFANKARDYVVK 221

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D      WE    VS    Q+IY +LNVTL     RGES Y   +  LV  L+++G
Sbjct: 222 LQSGDAHVLTLWEQFRRVSLTHSQEIYQQLNVTLNADDVRGESAYNDDLAPLVAELQQQG 281

Query: 496 LLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L     G ++++ E+         P+ I K  GGF Y T+DLAA+R R     AD ++Y 
Sbjct: 282 LAVESQGAQVVFLEEMADKEGNPSPVIIQKQGGGFLYATTDLAALRYRSHTLHADRVLYF 341

Query: 551 TDLGQGVH----FRLLEESTIIGDTIS 573
            D  Q +H    F L +++  + D IS
Sbjct: 342 IDARQSLHMQQVFTLAKKAGFVNDNIS 368



 Score =  211 bits (538), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 185/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD + R LE+ GH+VVR NHVGDWGTQFGMLIA L+++  +  + S  + DL+ FY
Sbjct: 139 SSIIGDAVVRTLEFQGHNVVRQNHVGDWGTQFGMLIAELEEQLQEGESASLALKDLEGFY 198

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + SKK FDE E F  +A   VV LQ  D      WE    VS    Q+IY +LNVTL   
Sbjct: 199 QSSKKHFDESEAFANKARDYVVKLQSGDAHVLTLWEQFRRVSLTHSQEIYQQLNVTLNAD 258

Query: 684 --RGESFYQKHMEQLVPYLE---------------------KKGNLS--LTKKLG----- 713
             RGES Y   +  LV  L+                     K+GN S  + +K G     
Sbjct: 259 DVRGESAYNDDLAPLVAELQQQGLAVESQGAQVVFLEEMADKEGNPSPVIIQKQGGGFLY 318

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +H + +   AKKAG +N N + ++   FG +
Sbjct: 319 ATTDLAALRYRSHTLHADRVLYFIDARQSLHMQQVFTLAKKAGFVNDNIS-LEHHPFGTM 377

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G D K FKTR+G TVKL++LL E + R+   + DKN +  L+  E +   + V  G IK
Sbjct: 378 MGADGKPFKTRTGGTVKLADLLVEAVERAEKVVADKNPN--LSAEERAVIARKVGIGAIK 435

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS  R  DY+F+++ ML   GNT+ YL YAY RI SI R A I+
Sbjct: 436 YADLSKTRTNDYIFNWETMLSFEGNTSPYLQYAYARIQSIFRKADID 482



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 104/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+   + DKN +  L+  E +   + V  G IKYADLS  R  DY+F+++ ML   G
Sbjct: 402  AVERAEKVVADKNPN--LSAEERAVIARKVGIGAIKYADLSKTRTNDYIFNWETMLSFEG 459

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NT+ YL YAY RI SI R A     D+ V+A ++ ++L    E AL+   L+  +V+   
Sbjct: 460  NTSPYLQYAYARIQSIFRKA-----DIDVSALNSELALNEPAEVALSIKTLQFAEVVEQS 514

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
            TR+   H LC YLYD++  F  FY+ C  ++   +G  +     RL LA + A  + K  
Sbjct: 515  TREAYPHLLCTYLYDLAGLFMRFYEQCPILK---DGIDEDTKNSRLQLALSVANTLNKGL 571

Query: 1109 DILNIRTVHKM 1119
            D+L I T+ KM
Sbjct: 572  DLLGIETMDKM 582



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 27/151 (17%)

Query: 9   MSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++R+ LSD  T A+  A  P   +  A VA++ +     FGD+Q N AM   KI K K 
Sbjct: 1   MNIRNLLSDYVTQAMLAAGLP--AECQAHVAASKKA---GFGDYQANGAMGAAKIAKAK- 54

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL------SRVYAGEQM 121
               P DIAQ I      +L  N  +  +I  IE A PGF+N+ L      + +    Q 
Sbjct: 55  ----PRDIAQQI----VDQLQQNSDVQVMISHIEIAGPGFINLTLDPQWLAANIRIINQD 106

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           K + +   QP T      V+VD+SSPN+A++
Sbjct: 107 KQLGIQDDQPQT------VVVDYSSPNLAKE 131


>gi|319897254|ref|YP_004135449.1| arginyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317432758|emb|CBY81123.1| arginyl-tRNA synthetase [Haemophilus influenzae F3031]
          Length = 577

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 215/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDEIF ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  Y+RLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRTMWKRLVDITMQQNQHNYNRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 ENDGALVVYLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 144/355 (40%), Positives = 193/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  Y+RL
Sbjct: 187 QDLEAFYREAKKHYDEDEIFAEKARNYVVKLQSGDEYCRTMWKRLVDITMQQNQHNYNRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVENDGALVVYLDEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + RS   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERSTVLINEKN--TNLSNDEKEAVIKA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + RS   + +KN  T L+  E     +AV  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  AIERSTVLINEKN--TNLSNDEKEAVIKAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTRI SI     INS  L  A    P++++ +KE  LA  LL+  + +  V
Sbjct: 455  NTAPYMQYAYTRIRSIFNKTDINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             ++   H LC YLY+++  FS FY++C  +  + E    ++   RL LA  T K +K+  
Sbjct: 511  GKEGTPHVLCAYLYELAGIFSSFYEHCPILNAEDE----SIKLSRLKLALLTEKTLKQGL 566

Query: 1109 DILNIRTVHKM 1119
             +L I+TV KM
Sbjct: 567  TLLGIKTVEKM 577



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|332289781|ref|YP_004420633.1| arginyl-tRNA synthetase [Gallibacterium anatis UMN179]
 gi|330432677|gb|AEC17736.1| arginyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 575

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 208/364 (57%), Gaps = 26/364 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+    A+  A    G    S A        +FGD+Q N  MA  K       
Sbjct: 1   MNIQTILSEKIKQAMIAA----GADQQSEALVRPSSKAQFGDYQANGVMAAAKKLA---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P D+AQ +          N  L ++I+K+E+A PGF+N+FL+  +   Q   ++ + 
Sbjct: 53  -MPPRDLAQKVVE--------NLDLGEMIEKVEIAGPGFINIFLNPAWLATQTNKMLADH 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                  K   ++ D+S+PN+AKEMHVGHLRSTIIGD + R LE++GH+V+R NHVGDWG
Sbjct: 104 HFLIAPVKAQTIVADYSAPNVAKEMHVGHLRSTIIGDAVVRTLEFVGHNVIRANHVGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+ K  +       ++DL+AFY+E+KK +DEDE+F ++A   VV LQ  D 
Sbjct: 164 TQFGMLIAYLE-KMQNENASDMELSDLEAFYREAKKHYDEDEVFAEKARGYVVKLQGGDE 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDD 501
             +K W  + D++ +  Q+ YDRLNVTLT++   GES Y   +  +V  LE KGL   DD
Sbjct: 223 YCRKMWRKLVDITMKQNQRNYDRLNVTLTDKDVMGESLYNPMLPGIVADLEAKGLAVKDD 282

Query: 502 GRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G  +++      ++   + + I K DGG+ Y T+D+A  + R E   AD I+Y TD  Q 
Sbjct: 283 GAVVVFLNEFKNKEGDPLGVIIQKKDGGYLYATTDIACAKYRYETLHADRILYFTDSRQS 342

Query: 557 VHFR 560
            H +
Sbjct: 343 QHLQ 346



 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 141/349 (40%), Positives = 195/349 (55%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE++GH+V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFVGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +DEDE+F ++A   VV LQ  D   +K W  + D++ +  Q+ YDRLNVTLT++
Sbjct: 194 REAKKHYDEDEVFAEKARGYVVKLQGGDEYCRKMWRKLVDITMKQNQRNYDRLNVTLTDK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  LE KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLEAKGLAVKDDGAVVVFLNEFKNKEGDPLGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              I+Y TD  Q  H + +    +KAG + P     D   FG++
Sbjct: 314 ATTDIACAKYRYETLHADRILYFTDSRQSQHLQQVWLIVRKAGYV-PESVTWDHFNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   + +K+  T L+  E  +  + V  G +K
Sbjct: 373 LGKDNKPFKTRTGGTVKLADLLDEAVERAEKLISEKS--TNLSAEEQHQVAEVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   +GI+ +
Sbjct: 431 YADLSKNRTTDYVFDWDNMLTFEGNTAPYIQYAYTRIRSIFANSGIDPQ 479



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 105/178 (58%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E  +  + V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTNLSAEEQHQVAEVVGIGAVKYADLSKNRTTDYVFDWDNMLTFEGNTAPYIQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   +GI+ + L     +  + ++ +KE  LA TLL+  + +  V ++   H LC YL
Sbjct: 468  RSIFANSGIDPQQL-----AGEIQIKDDKERQLALTLLKFEEAINTVVKEGTPHVLCAYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++ AFS FY++C  + +  E     V   RL LA  TAKV+K+  D+L I+TV KM
Sbjct: 523  YDLAGAFSSFYEHCPILNQAEE-----VKQSRLKLAALTAKVLKQGLDLLGIKTVEKM 575



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 17/144 (11%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+    A+  A    G    S A        +FGD+Q N  MA  K       
Sbjct: 1   MNIQTILSEKIKQAMIAA----GADQQSEALVRPSSKAQFGDYQANGVMAAAKKLA---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
              P D+AQ +          N  L ++I+K+E A PGF+N+FL+  +   Q   ++ + 
Sbjct: 53  -MPPRDLAQKVVE--------NLDLGEMIEKVEIAGPGFINIFLNPAWLATQTNKMLADH 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
                  K   ++ D+S+PN+A++
Sbjct: 104 HFLIAPVKAQTIVADYSAPNVAKE 127


>gi|419802983|ref|ZP_14328161.1| arginine--tRNA ligase [Haemophilus parainfluenzae HK262]
 gi|419844850|ref|ZP_14368137.1| arginine--tRNA ligase [Haemophilus parainfluenzae HK2019]
 gi|385188779|gb|EIF36252.1| arginine--tRNA ligase [Haemophilus parainfluenzae HK262]
 gi|386416776|gb|EIJ31268.1| arginine--tRNA ligase [Haemophilus parainfluenzae HK2019]
          Length = 577

 Score =  248 bits (633), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 210/364 (57%), Gaps = 26/364 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+  A    G      A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMIAA----GADEQCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ +          +  L+ V +K E+A PGF+N+FL+  +    +   + + 
Sbjct: 53  -LNPREFAQKVLD--------HADLSDVAEKTEIAGPGFINIFLNPTWLANNVSAALKDQ 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
               + N+K  +++D+SSPN+AKEMHVGHLRSTIIGD + R LE+LGH+V+R NHVGDWG
Sbjct: 104 NLGVSANEKQTIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHNVIRANHVGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDE F ++A   VV LQ  D 
Sbjct: 164 TQFGMLIAYLE-KMENEHASEMELQDLEAFYREAKKHYDEDEAFAEKARNYVVKLQGGDE 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDD 501
             +  W+ + D++ +  Q+ YDRLNVTLTE+   GES Y   +  +V  L+K+GL   D+
Sbjct: 223 YCRTMWKKLVDITMQQNQRNYDRLNVTLTEKDVMGESLYNPMLPAIVEDLKKQGLAVEDE 282

Query: 502 GRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D  Q 
Sbjct: 283 GALVVYLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQS 342

Query: 557 VHFR 560
            H +
Sbjct: 343 QHMQ 346



 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/372 (38%), Positives = 199/372 (53%), Gaps = 58/372 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDE F ++A   VV LQ  D   +  W+ + D++ +  Q+ YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEAFAEKARNYVVKLQGGDEYCRTMWKKLVDITMQQNQRNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPAIVEDLKKQGLAVEDEGALVVYLDEFKNKEGEPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E +   +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSDEEKTAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   A +N     E
Sbjct: 424 VGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKADVNPTALAE 483

Query: 868 PDPSQSEVEDRC 879
                S+ ++R 
Sbjct: 484 AKIQLSDEKERA 495



 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E +   +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSDEEKTAVIEAVGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   A +N   L  A     + L  EKE ALA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKADVNPTALAEA----KIQLSDEKERALAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    +V   RL LA  T K +K+  ++L I+T+ KM
Sbjct: 524  YELAGVFSSFYEHCPILNAEDE----SVKLSRLKLASLTEKTLKQGLELLGIKTIEKM 577



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 19/156 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+  A    G      A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMIAA----GADEQCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ +          +  L+ V +K E A PGF+N+FL+  +    +   + + 
Sbjct: 53  -LNPREFAQKVLD--------HADLSDVAEKTEIAGPGFINIFLNPTWLANNVSAALKDQ 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
               + N+K  +++D+SSPN+A++      HL S I
Sbjct: 104 NLGVSANEKQTIVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|240948908|ref|ZP_04753264.1| arginyl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240296723|gb|EER47334.1| arginyl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 575

 Score =  248 bits (632), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/329 (42%), Positives = 202/329 (61%), Gaps = 28/329 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K         NP + AQ I          N +L  ++DK+E+A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NANLDGIVDKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII--VN-GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL++ +  E     +  VN G+Q  T N +  ++VD+SSPN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLNKAWLAENANQALQAVNFGIQ--TANPQ-TIVVDYSSPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K
Sbjct: 139 GDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMELSDLEAFYRAAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
           + +D DE F ++A   VV LQ  D   +  W+ + D++ R  Q+ YDRLNVTLTE+   G
Sbjct: 198 EHYDSDEAFAEKARNYVVKLQSGDEYCRTMWKKLVDITMRHNQENYDRLNVTLTEKDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   + ++V  L+ KGL   D+G  +++ E   ++   PM ++  K DGGF Y T+D
Sbjct: 258 ESLYNPMLPEIVADLKAKGLAVEDEGALVVFLEEFKNKDGDPMGVIVQKKDGGFLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +AA + R E  KAD  +  +D  Q  H +
Sbjct: 318 VAAAKYRYETLKADRALVFSDSRQAQHMQ 346



 Score =  229 bits (583), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 142/350 (40%), Positives = 194/350 (55%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+ +D DE F ++A   VV LQ  D   +  W+ + D++ R  Q+ YDRLNVTLTE+
Sbjct: 194 RAAKEHYDSDEAFAEKARNYVVKLQSGDEYCRTMWKKLVDITMRHNQENYDRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   + ++V  L+ K                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPEIVADLKAKGLAVEDEGALVVFLEEFKNKDGDPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+   ++   FG++
Sbjct: 314 TTTDVAAAKYRYETLKADRALVFSDSRQAQHMQQAWLITRKAGYV-PDSFSLEHPFFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TVKL +LLDE + R+ DKL    R T+LT  E +   +AVA G +K
Sbjct: 373 LGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLISA-RSTDLTAEEKAAVVEAVAIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           Y+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   AGI++ +
Sbjct: 431 YSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFARAGIDANN 480



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 106/178 (59%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T+LT  E +   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RSTDLTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   AGI++ +L     +  + L  +KE ALA  LL+  + L  V ++   H LC+YL
Sbjct: 468  RSIFARAGIDANNL-----TGNILLTEDKERALAVKLLQFEEALNGVAKEGMPHILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY+ C  +  +     + V   RL LA  TAK +K+  D+L I+TV KM
Sbjct: 523  YELAGTFSSFYEACPILNAE-----EAVKNSRLRLAALTAKTLKQGLDLLGIKTVEKM 575



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 21/121 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K         NP + AQ I          N +L  ++DK+E A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NANLDGIVDKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII--VN-GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           F+N+FL++ +  E     +  VN G+Q  T N +  ++VD+SSPN+A++      HL S 
Sbjct: 82  FINIFLNKAWLAENANQALQAVNFGIQ--TANPQ-TIVVDYSSPNVAKE--MHVGHLRST 136

Query: 164 I 164
           I
Sbjct: 137 I 137


>gi|127511312|ref|YP_001092509.1| arginyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|166232841|sp|A3Q9V2.1|SYR_SHELP RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|126636607|gb|ABO22250.1| arginyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 581

 Score =  248 bits (632), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 141/325 (43%), Positives = 195/325 (60%), Gaps = 22/325 (6%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K+      +KNP ++AQ    ++   L  N  +AKV    E+A PGF+
Sbjct: 41  GDFATNLAMMLTKV-----ARKNPREVAQ----LIIDSLPQNSQVAKV----EIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F+       Q+   + +     TL     V+VD+SSPN+AKEMHVGHLRSTIIGD + 
Sbjct: 88  NFFIDENALTNQLMAALSDDHLGVTLPTPQTVVVDYSSPNLAKEMHVGHLRSTIIGDAVV 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAFYKESKKRFD 423
           R LE+ GH V+R NHVGDWGTQFGML+A++++       ++   +ADL++FY+ +K RFD
Sbjct: 148 RALEFQGHKVIRQNHVGDWGTQFGMLLAYMEELRAQQGEQAQVELADLESFYRAAKVRFD 207

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFY 480
           E E F  RA Q VV LQ  D    K W    D+S     ++Y+RL V+LT    RGES Y
Sbjct: 208 ESEEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTRADVRGESAY 267

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAI 535
              +EQ+V  L+ +GLL   +G K+++ ++  +     +P+ I K+DGGF Y TSDLAA+
Sbjct: 268 NDDLEQVVRDLDAQGLLSESNGAKVVFQDEFQTKEGEPLPVIIQKADGGFLYATSDLAAM 327

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFR 560
           R R    KAD  +Y  DL Q +HF+
Sbjct: 328 RYRSNVLKADRALYFVDLRQALHFQ 352



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/346 (38%), Positives = 187/346 (54%), Gaps = 54/346 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAF 623
           STIIGD + R LE+ GH V+R NHVGDWGTQFGML+A++++       ++   +ADL++F
Sbjct: 139 STIIGDAVVRALEFQGHKVIRQNHVGDWGTQFGMLLAYMEELRAQQGEQAQVELADLESF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE E F  RA Q VV LQ  D    K W    D+S     ++Y+RL V+LT 
Sbjct: 199 YRAAKVRFDESEEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV------------------------- 715
              RGES Y   +EQ+V  L+ +G LS +    +V                         
Sbjct: 259 ADVRGESAYNDDLEQVVRDLDAQGLLSESNGAKVVFQDEFQTKEGEPLPVIIQKADGGFL 318

Query: 716 ----------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                 Y  DL Q +HF+ +   A+ A  + P  + ++ +GFG 
Sbjct: 319 YATSDLAAMRYRSNVLKADRALYFVDLRQALHFQQVFSLARTANFVRPELS-LEHMGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTRSG  VKL +LL E   R+L+ ++ KN   ++   EL++  + V    +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLVDLLSEAETRALELVRSKN--PDMDEEELAKIAKVVGIASV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A 
Sbjct: 436 KYADLSKNRASDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRAA 481



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 110/188 (58%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++   EL++  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEEELAKIAKVVGIASVKYADLSKNRASDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I + A        +      + LEH+KE  L   L +  +VL  +   
Sbjct: 464  PYLLYAYTRVAGIFKRAA------EIDLTGASIKLEHDKEKELGNKLAQFAEVLGRMVAK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YL++++ AFS FY+ C  +  D+E + K+    RLLLA+ TAK +K+  D+L
Sbjct: 518  GQPHALCGYLFELAGAFSSFYEACPVLAADSEDEKKS----RLLLAQLTAKTLKQGLDLL 573

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 574  GIETLERM 581



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 13/104 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K+      +KNP ++AQ    ++   L  N  +AKV    E A PGF+
Sbjct: 41  GDFATNLAMMLTKV-----ARKNPREVAQ----LIIDSLPQNSQVAKV----EIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           N F+       Q+   + +     TL     V+VD+SSPN+A++
Sbjct: 88  NFFIDENALTNQLMAALSDDHLGVTLPTPQTVVVDYSSPNLAKE 131


>gi|148828426|ref|YP_001293179.1| arginyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|166232792|sp|A5UJ40.1|SYR_HAEIG RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|148719668|gb|ABR00796.1| arginyl-tRNA synthetase [Haemophilus influenzae PittGG]
          Length = 577

 Score =  248 bits (632), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 214/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K          + DL+AFY+E+KK +DEDEIF ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQHEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  Y+RLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRTMWKRLVDITMQQNQHNYNRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 ENDGALVVYLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/355 (40%), Positives = 192/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K          +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQHEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  Y+RL
Sbjct: 187 QDLEAFYREAKKHYDEDEIFAEKARNYVVKLQSGDEYCRTMWKRLVDITMQQNQHNYNRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVENDGALVVYLDEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTIKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  126 bits (317), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    ++   RL LA  T K +K+   +L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SIKLSRLKLALLTEKTLKQGLTLLGIKTVEKM 577



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|145632971|ref|ZP_01788704.1| arginyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|386266018|ref|YP_005829510.1| arginyl-tRNA synthetase [Haemophilus influenzae R2846]
 gi|144986627|gb|EDJ93193.1| arginyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|309973254|gb|ADO96455.1| Arginyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 577

 Score =  248 bits (632), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/367 (38%), Positives = 215/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDE+F ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEVFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  Y+RLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRTMWKRLVDITMQQNQHNYNRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 ENDGALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  232 bits (592), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 141/355 (39%), Positives = 193/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDE+F ++A   VV LQ  D   +  W+ + D++ +  Q  Y+RL
Sbjct: 187 QDLEAFYREAKKHYDEDEVFAEKARNYVVKLQSGDEYCRTMWKRLVDITMQQNQHNYNRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVENDGALVVYLDEFKNKEGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTIKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    ++   RL LA  T K +K+   +L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAENE----SIKLSRLKLALLTEKTLKQGLTLLGIKTVEKM 577



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|325578263|ref|ZP_08148398.1| arginine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159999|gb|EGC72128.1| arginine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 577

 Score =  248 bits (632), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 210/364 (57%), Gaps = 26/364 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+  A    G      A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMIAA----GADEQCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ +          +  L+ V +K E+A PGF+N+FL+  +    +   + + 
Sbjct: 53  -LNPREFAQKVLD--------HADLSDVAEKTEIAGPGFINIFLNPTWLANNVSAALKDQ 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
               + N+K  +++D+SSPN+AKEMHVGHLRSTIIGD + R LE+LGH+V+R NHVGDWG
Sbjct: 104 NLGVSANEKQTIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHNVIRANHVGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDE F ++A   VV LQ  D 
Sbjct: 164 TQFGMLIAYLE-KMENEHASEMELQDLEAFYREAKKHYDEDEAFAEKARNYVVKLQGGDE 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDD 501
             +  W+ + D++ +  Q+ YDRLNVTLTE+   GES Y   +  +V  L+K+GL   D+
Sbjct: 223 YCRTMWKKLVDITMQQNQRNYDRLNVTLTEKDVMGESLYNPMLPAIVEDLKKQGLAVEDE 282

Query: 502 GRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D  Q 
Sbjct: 283 GALVVYLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQS 342

Query: 557 VHFR 560
            H +
Sbjct: 343 QHMQ 346



 Score =  233 bits (594), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 145/372 (38%), Positives = 199/372 (53%), Gaps = 58/372 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDE F ++A   VV LQ  D   +  W+ + D++ +  Q+ YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEAFAEKARNYVVKLQGGDEYCRTMWKKLVDITMQQNQRNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPAIVEDLKKQGLAVEDEGALVVYLDEFKNKEGEPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E +   +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSDEEKTAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   A +N     E
Sbjct: 424 VGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKADVNPTALAE 483

Query: 868 PDPSQSEVEDRC 879
                S+ ++R 
Sbjct: 484 AKIQLSDEKERA 495



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 100/178 (56%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E +   +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSDEEKTAVIEAVGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   A +N   L  A     + L  EKE ALA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKADVNPTALAEA----KIQLSDEKERALAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E     V   RL LA  T K +K+   +L I+T+ KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----NVKLSRLKLASLTEKTLKQGLALLGIKTIEKM 577



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 19/156 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+  A    G      A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMIAA----GADEQCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ +          +  L+ V +K E A PGF+N+FL+  +    +   + + 
Sbjct: 53  -LNPREFAQKVLD--------HADLSDVAEKTEIAGPGFINIFLNPTWLANNVSAALKDQ 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
               + N+K  +++D+SSPN+A++      HL S I
Sbjct: 104 NLGVSANEKQTIVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|229845606|ref|ZP_04465732.1| arginyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|229811473|gb|EEP47176.1| arginyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 577

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/367 (38%), Positives = 215/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDE+F ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEVFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  Y+RLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRMMWKRLVDITMQQNQHNYNRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 ENDGALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  232 bits (592), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 141/355 (39%), Positives = 193/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDE+F ++A   VV LQ  D   +  W+ + D++ +  Q  Y+RL
Sbjct: 187 QDLEAFYREAKKHYDEDEVFAEKARNYVVKLQSGDEYCRMMWKRLVDITMQQNQHNYNRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVENDGALVVYLDEFKNKEGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTIKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    ++   RL LA  T K +K+   +L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAENE----SIKLSRLKLALLTEKTLKQGLTLLGIKTVEKM 577



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|145627706|ref|ZP_01783507.1| arginyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|144979481|gb|EDJ89140.1| arginyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
          Length = 577

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 157/427 (36%), Positives = 238/427 (55%), Gaps = 45/427 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDEIF ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  Y RLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRAMWKRLVDITMQQNQHNYARLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 ENDGALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 613
            Q  H   ++++ +    I+R   Y+  D   L H       FGM++      F   +  
Sbjct: 340 RQSQH---MQQAWL----ITRKAGYV-PDSFSLEH-----KNFGMMLGKDGKPFKTRIGG 386

Query: 614 SPPIADL 620
           +  +ADL
Sbjct: 387 TVKLADL 393



 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 191/355 (53%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  Y RL
Sbjct: 187 QDLEAFYREAKKHYDEDEIFAEKARNYVVKLQSGDEYCRAMWKRLVDITMQQNQHNYARL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVENDGALVVYLDEFKNKEGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRIGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    ++   RL LA  T K +K+   +L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SIKLSRLKLALLTEKTLKQGLTLLGIKTVEKM 577



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|37679228|ref|NP_933837.1| arginyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|39932019|sp|Q7MMM3.1|SYR_VIBVY RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|37197971|dbj|BAC93808.1| arginyl-tRNA synthetase [Vibrio vulnificus YJ016]
          Length = 577

 Score =  247 bits (630), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 178/532 (33%), Positives = 270/532 (50%), Gaps = 59/532 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  ++D  + A++ A    G  T S A+  +    +FGD+Q N  M + K       
Sbjct: 1   MNIQALINDKVSQALEAA----GAPTGSPAAVRQSAKPQFGDYQANGVMGVAKQLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ +  V+         L  +  K E+A PGF+N+FLS  +  +Q +  + + 
Sbjct: 53  -TNPREFAQKVLDVL--------DLDGIASKTEIAGPGFINIFLSEEFLAKQAEAALADP 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                  +   ++ D+S+PN+AKEMHVGHLRSTIIGD + R LE+LGH V+R NH+GDWG
Sbjct: 104 RLGVASEEAQTIVADYSAPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHKVIRANHIGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+    +    S  +ADL+ FY+ESKK +DEDE F  +A   VV LQ  D 
Sbjct: 164 TQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLYDEDEEFAVKARGYVVKLQSGDE 223

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDD 501
              + W+ + DV+    Q+ YDRLNV+L+     GES Y   + ++V  L+ +GL   DD
Sbjct: 224 FCAEMWKKLVDVTMIQNQRNYDRLNVSLSRDDVMGESMYNDMLPKIVADLKAQGLAVEDD 283

Query: 502 GRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G ++++ E+   +   PM ++  K DGGF Y T+D+A  + R EE  AD ++Y  D  Q 
Sbjct: 284 GAQVVFLEEFKNKDGEPMGVIVQKRDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQ- 342

Query: 557 VHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 616
            H  L++  TI+     R   Y+   V   +H       FGM++      F      +  
Sbjct: 343 -HQHLMQAWTIV-----RKAGYVPESVSLEHHA------FGMMLGKDGKPFKTRAGGTVR 390

Query: 617 IADL-------QAFYKESKK-RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSR- 667
           +ADL        A   ESK     EDE   K+A    VA+         A     D+S+ 
Sbjct: 391 LADLLDEAEVRAAQLIESKNPELAEDE---KKAIANTVAM---------AAVKYADLSKH 438

Query: 668 RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTD 719
           R    ++D  N+   E   + Y ++    V  +  K  +S+    G + +TD
Sbjct: 439 RTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVSMDDLQGEIKITD 490



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 189/357 (52%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARGYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+L+     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLSRDDVMGESMYNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEPMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E       
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELAEDEKKAIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++ +D
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVSMDD 481



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E       VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAEDEKKAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++ +DL+       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVSMDDLQ-----GEIKITDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 19/156 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  ++D  + A++ A    G  T S A+  +    +FGD+Q N  M + K       
Sbjct: 1   MNIQALINDKVSQALEAA----GAPTGSPAAVRQSAKPQFGDYQANGVMGVAKQLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ +  V+         L  +  K E A PGF+N+FLS  +  +Q +  + + 
Sbjct: 53  -TNPREFAQKVLDVL--------DLDGIASKTEIAGPGFINIFLSEEFLAKQAEAALADP 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                  +   ++ D+S+PN+A++      HL S I
Sbjct: 104 RLGVASEEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|124805963|ref|XP_001350588.1| arginyl-tRNA synthetase, putative [Plasmodium falciparum 3D7]
 gi|23496712|gb|AAN36268.1|AE014846_67 arginyl-tRNA synthetase, putative [Plasmodium falciparum 3D7]
          Length = 590

 Score =  247 bits (630), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 159/487 (32%), Positives = 258/487 (52%), Gaps = 67/487 (13%)

Query: 214 VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 273
           +F +++Q  FP + +  A V   N     KFG +QCN+A+    I+K  G++ N ++ AQ
Sbjct: 14  IFQNSIQKCFPSISED-AIVTYAN----LKFGHYQCNNAI---NIYKKYGKELN-YENAQ 64

Query: 274 SIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKK 333
            I+  + S +        + ++I+ +  GF+ V LS+ Y    +K +  NG +       
Sbjct: 65  KISEFIISNIN-----ETIFEEIKSSPQGFITVKLSKDYIETSLKKLF-NGEKIDISINI 118

Query: 334 L----------RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
                       VLVDFSSPNIAKEMHVGHLRSTIIGD+I R+ E+L  +  R+NHVGDW
Sbjct: 119 NDIKESNENYGNVLVDFSSPNIAKEMHVGHLRSTIIGDSICRVFEFLKINTHRVNHVGDW 178

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGM+I +++  +P++  + P +++L + Y+ESKK +D D+ F+K + +  + LQ  D
Sbjct: 179 GTQFGMIINYIKTHYPNFKEEMPDLSNLTSLYQESKKMYDADKEFEKSSKENAIKLQNND 238

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
            D K  W  +C+ S+++F K+Y+ L++ L   GESFY   +  ++  L++  LL  + G 
Sbjct: 239 EDCKFVWNKLCESSKKEFDKLYNILDIKLEYVGESFYVPMLSTVLDLLKESKLLT-NIGD 297

Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
            I +  +   +P+ + KS+GG+ YD++D+AA+  R+ +   + ++YVTD+GQ  HF    
Sbjct: 298 AICYQSENFKVPLFLQKSNGGYGYDSTDVAALYYRLTQLNCNCVIYVTDIGQLTHFE--- 354

Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 623
               I D I +     G    +L HVG     FG ++     KF    T+S     L   
Sbjct: 355 ---TIFDLIKK--TNWGDKNAKLMHVG-----FGFVLNEDNKKFK---TRSGTTVKLINL 401

Query: 624 YKESKKR-------------------FDEDEIFKKRAYQCVVALQRFD------PDYKKA 658
            KE  +R                   F+  +I +     CV A++ FD       DYK +
Sbjct: 402 IKEGTERAKRDLLQRIETKSEEEKSYFENVDIDQLSESLCVSAIKYFDLKQHRNSDYKFS 461

Query: 659 WEMICDV 665
           ++ + +V
Sbjct: 462 YDNMLNV 468



 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 195/358 (54%), Gaps = 48/358 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I R+ E+L  +  R+NHVGDWGTQFGM+I +++  +P++  + P +++L + Y
Sbjct: 151 STIIGDSICRVFEFLKINTHRVNHVGDWGTQFGMIINYIKTHYPNFKEEMPDLSNLTSLY 210

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +D D+ F+K + +  + LQ  D D K  W  +C+ S+++F K+Y+ L++ L   
Sbjct: 211 QESKKMYDADKEFEKSSKENAIKLQNNDEDCKFVWNKLCESSKKEFDKLYNILDIKLEYV 270

Query: 685 GESFYQKHMEQLVPYLEK------------------KGNLSLTKKLG------------- 713
           GESFY   +  ++  L++                  K  L L K  G             
Sbjct: 271 GESFYVPMLSTVLDLLKESKLLTNIGDAICYQSENFKVPLFLQKSNGGYGYDSTDVAALY 330

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     ++YVTD+GQ  HF  + +  KK    + N   M  VGFG VL ED KKFK
Sbjct: 331 YRLTQLNCNCVIYVTDIGQLTHFETIFDLIKKTNWGDKNAKLMH-VGFGFVLNEDNKKFK 389

Query: 764 TRSGDTVKLSELLDEGLRRSLDKL------KDKNRHTELTPTELSEAQQAVAYGCIKYAD 817
           TRSG TVKL  L+ EG  R+   L      K +   +     ++ +  +++    IKY D
Sbjct: 390 TRSGTTVKLINLIKEGTERAKRDLLQRIETKSEEEKSYFENVDIDQLSESLCVSAIKYFD 449

Query: 818 LSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSEV 875
           L  +RN DY FS+D ML+ +GNT +Y++Y Y+RI SI R + IN ED  + + S + +
Sbjct: 450 LKQHRNSDYKFSYDNMLNVKGNTGIYIIYGYSRICSIFRKSTINVEDISKDELSLTSI 507



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 11/170 (6%)

Query: 950  ELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 1009
            ++ +  +++    IKY DL  +RN DY FS+D ML+ +GNT +Y++Y Y+RI SI R + 
Sbjct: 432  DIDQLSESLCVSAIKYFDLKQHRNSDYKFSYDNMLNVKGNTGIYIIYGYSRICSIFRKST 491

Query: 1010 INSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFS 1069
            IN ED+        +SL    E  L   +L+  D+   + +++ +H L EY+YD++T F+
Sbjct: 492  INVEDI----SKDELSLTSIYEINLGLHILKFPDIFYYILKNMLVHKLAEYMYDLTTTFT 547

Query: 1070 EFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             FY+NC  +  + E         RLLL   T  ++K C ++L ++ + K+
Sbjct: 548  AFYENCKVLNNENE-------KSRLLLCSITKSLLKLCMELLGMKPIEKL 590



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 25/145 (17%)

Query: 18  VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 77
           +F +++Q  FP + +  A V   N     KFG +QCN+A+    I+K  G++ N ++ AQ
Sbjct: 14  IFQNSIQKCFPSISED-AIVTYAN----LKFGHYQCNNAI---NIYKKYGKELN-YENAQ 64

Query: 78  SIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKK 137
            I+  + S +        + ++I+++  GF+ V LS+ Y    +K +  NG +       
Sbjct: 65  KISEFIISNIN-----ETIFEEIKSSPQGFITVKLSKDYIETSLKKLF-NGEKIDISINI 118

Query: 138 L----------RVLVDFSSPNIARK 152
                       VLVDFSSPNIA++
Sbjct: 119 NDIKESNENYGNVLVDFSSPNIAKE 143


>gi|146291657|ref|YP_001182081.1| arginyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|166232842|sp|A4Y2U9.1|SYR_SHEPC RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|145563347|gb|ABP74282.1| arginyl-tRNA synthetase [Shewanella putrefaciens CN-32]
          Length = 581

 Score =  247 bits (630), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 154/398 (38%), Positives = 232/398 (58%), Gaps = 44/398 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K+       KNP ++AQ I       + T P+ A  + K+E+A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKNPRELAQLI-------IDTLPASA-FVAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F++     +Q+++ + +   G++ PT      V+VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFINDSALADQLQNAVNDEHLGIKLPTPQT---VVVDYSSPNLAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKK 420
           ++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K 
Sbjct: 145 SVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEQAHLELSDLETFYRAAKL 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y RL V+LT     GE
Sbjct: 205 RFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYARLGVSLTRADVHGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           S Y   +EQ+V  L+ +GLL   +G K+++ E     +  ++P+ I K+DGG+ Y TSDL
Sbjct: 265 SAYNADLEQVVKDLDAQGLLTESNGAKVVFQEAFRNKEGEALPVIIQKADGGYLYATSDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           AA+R R    KAD ++Y  DL Q +HF+ +        ++++L +++  D + L H+G +
Sbjct: 325 AAMRYRSNVLKADRVLYFVDLRQALHFQQVF-------SLAKLAKFVRED-MSLEHLG-F 375

Query: 593 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           GT  G      +D  P + T+S  +  L    +E+  R
Sbjct: 376 GTMNG------EDGRP-FKTRSGGVVKLVDLLEEANVR 406



 Score =  216 bits (550), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 188/349 (53%), Gaps = 55/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEQAHLELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y RL V+LT 
Sbjct: 199 YRAAKLRFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYARLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLS--------------------------------- 707
               GES Y   +EQ+V  L+ +G L+                                 
Sbjct: 259 ADVHGESAYNADLEQVVKDLDAQGLLTESNGAKVVFQEAFRNKEGEALPVIIQKADGGYL 318

Query: 708 --------------LTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                         + K   ++Y  DL Q +HF+ +   AK A  +  + + ++ +GFG 
Sbjct: 319 YATSDLAAMRYRSNVLKADRVLYFVDLRQALHFQQVFSLAKLAKFVREDMS-LEHLGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTRSG  VKL +LL+E   R+L+ ++ KN   ++    L+E  + V    +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLVDLLEEANVRALELVRSKN--PDMDEETLAEIARVVGISAV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI-ARTAGIN 861
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I  R  G++
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRVTGLD 484



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 109/189 (57%), Gaps = 14/189 (7%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++    L+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEETLAEIARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASI-ARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
             YLLYAYTR+A I  R  G+   DL  A     + LEHEKE  L   L +  ++L  V  
Sbjct: 464  PYLLYAYTRVAGIFKRVTGL---DLSQA----KIVLEHEKEKDLGNKLAQFGEILNRVVD 516

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H LC YLY+++ AFS FY+ C  +  D + +       RLLL++ TA+ ++K  ++
Sbjct: 517  KGQPHVLCAYLYELAGAFSSFYEACPVLAADNDEQ----KNSRLLLSQLTARTLQKGLNL 572

Query: 1111 LNIRTVHKM 1119
            L I T+ +M
Sbjct: 573  LGIETLERM 581



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 19/107 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K+       KNP ++AQ I       + T P+ A  + K+E A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKNPRELAQLI-------IDTLPASA-FVAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F++     +Q+++ + +   G++ PT      V+VD+SSPN+A++
Sbjct: 88  NFFINDSALADQLQNAVNDEHLGIKLPTPQT---VVVDYSSPNLAKE 131


>gi|319776477|ref|YP_004138965.1| arginyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|329123983|ref|ZP_08252530.1| arginine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|317451068|emb|CBY87301.1| arginyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|327467408|gb|EGF12906.1| arginine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 577

 Score =  247 bits (630), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 143/367 (38%), Positives = 215/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  +A  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIIAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDEIF ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  Y+RLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRTMWKRLVDITMQQNQHNYNRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 ENDGALVVYLDEFKNKDGNPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 144/355 (40%), Positives = 193/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  Y+RL
Sbjct: 187 QDLEAFYREAKKHYDEDEIFAEKARNYVVKLQSGDEYCRTMWKRLVDITMQQNQHNYNRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVENDGALVVYLDEFKNKDGNPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + RS   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERSTVLINEKN--TNLSNDEKEAVIKA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + RS   + +KN  T L+  E     +AV  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  AIERSTVLINEKN--TNLSNDEKEAVIKAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTRI SI     INS  L  A    P++++ +KE  LA  LL+  + +  V
Sbjct: 455  NTAPYMQYAYTRIRSIFNKTDINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             ++   H LC YLY+++  FS FY++C  +  + E    ++   RL LA  T K +K+  
Sbjct: 511  GKEGTPHVLCAYLYELAGIFSSFYEHCPILNAEDE----SIKLSRLKLALLTEKTLKQGL 566

Query: 1109 DILNIRTVHKM 1119
             +L I+TV KM
Sbjct: 567  TLLGIKTVEKM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  +A  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIIAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|345430103|ref|YP_004823223.1| arginyl-tRNA synthetase [Haemophilus parainfluenzae T3T1]
 gi|301156166|emb|CBW15637.1| arginyl-tRNA synthetase [Haemophilus parainfluenzae T3T1]
          Length = 577

 Score =  247 bits (630), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 210/364 (57%), Gaps = 26/364 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+  A    G      A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMIAA----GADEQCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ +          +  L+ + +K E+A PGF+N+FL+  +    +   + + 
Sbjct: 53  -LNPREFAQKVLD--------HADLSDIAEKTEIAGPGFINIFLNPTWLANNVSAALKDQ 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
               + N+K  +++D+SSPN+AKEMHVGHLRSTIIGD + R LE+LGH+V+R NHVGDWG
Sbjct: 104 NLGVSANEKQTIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHNVIRANHVGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDE F ++A   VV LQ  D 
Sbjct: 164 TQFGMLIAYLE-KMENEHASEMELQDLEAFYREAKKHYDEDESFAEKARNYVVKLQGGDE 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDD 501
             +  W+ + D++ +  Q+ YDRLNVTLTE+   GES Y   +  +V  L+K+GL   D+
Sbjct: 223 YCRTMWKKLVDITMQQNQRNYDRLNVTLTEKDVMGESLYNPMLPAIVEDLKKQGLAVEDE 282

Query: 502 GRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D  Q 
Sbjct: 283 GALVVYLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQS 342

Query: 557 VHFR 560
            H +
Sbjct: 343 QHMQ 346



 Score =  233 bits (594), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/372 (38%), Positives = 199/372 (53%), Gaps = 58/372 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDE F ++A   VV LQ  D   +  W+ + D++ +  Q+ YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDESFAEKARNYVVKLQGGDEYCRTMWKKLVDITMQQNQRNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPAIVEDLKKQGLAVEDEGALVVYLDEFKNKEGEPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E +   +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSDEEKTAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   A +N     E
Sbjct: 424 VGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKANVNPTALAE 483

Query: 868 PDPSQSEVEDRC 879
                S+ ++R 
Sbjct: 484 AKIQLSDEKERA 495



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 101/178 (56%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E +   +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSDEEKTAVIEAVGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   A +N   L  A     + L  EKE ALA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKANVNPTALAEA----KIQLSDEKERALAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++ AFS FY++C  +  + E     V   RL LA  T K +K+   +L I+T+ KM
Sbjct: 524  YELAGAFSSFYEHCPILNAEDE----NVKLSRLKLASLTEKTLKQGLALLGIKTIEKM 577



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 19/156 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+  A    G      A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMIAA----GADEQCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ +          +  L+ + +K E A PGF+N+FL+  +    +   + + 
Sbjct: 53  -LNPREFAQKVLD--------HADLSDIAEKTEIAGPGFINIFLNPTWLANNVSAALKDQ 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
               + N+K  +++D+SSPN+A++      HL S I
Sbjct: 104 NLGVSANEKQTIVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|170717675|ref|YP_001784750.1| arginyl-tRNA synthetase [Haemophilus somnus 2336]
 gi|189083536|sp|B0UUF1.1|SYR_HAES2 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|168825804|gb|ACA31175.1| arginyl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 577

 Score =  246 bits (629), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 149/399 (37%), Positives = 230/399 (57%), Gaps = 38/399 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA  K         NP D AQ +  ++         L  + +K+E+A PG
Sbjct: 35  QFGDYQANGIMATAKKLG-----LNPRDFAQKVLDLI--------DLKNIAEKMEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL + +  E I+  + +     T+ +   ++VD+SSPN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDKNWLAENIQVTLQDKKLGVTVEEIQTIVVDYSSPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +    +  +ADL+AFY+ +K+ +
Sbjct: 142 VVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMENEHASAMELADLEAFYRAAKEHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           D DE F ++A   VV LQ  D   +  W+ + D++ +  Q+ YDRLNVTLT+    GES 
Sbjct: 201 DNDETFAEKARNYVVKLQNGDAYCRTMWKKLVDITMQQNQRNYDRLNVTLTQNDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   D+G ++++ E   ++   PM ++  K DGGF Y T+D+AA
Sbjct: 261 YNPMLPEIVADLKAQGLAVEDEGAQVVYLEEFKNKDGDPMGVIVQKKDGGFLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R    KAD  +  +D  Q  H   ++++ +    I+R   Y+  D  +L H      
Sbjct: 321 AKYRYHTLKADRALVFSDTRQSQH---MQQAWL----ITRKAGYV-PDSFQLEH-----K 367

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 633
            FGM++   +D  P + T+S     L     E+ +R D+
Sbjct: 368 NFGMMLG--KDGKP-FKTRSGGTVKLTDLLDEAIERADK 403



 Score =  226 bits (575), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 195/356 (54%), Gaps = 58/356 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +    +  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMENEHASAMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+AFY+ +K+ +D DE F ++A   VV LQ  D   +  W+ + D++ +  Q+ YDRL
Sbjct: 187 ADLEAFYRAAKEHYDNDETFAEKARNYVVKLQNGDAYCRTMWKKLVDITMQQNQRNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVP-----------------YLEK--------KGNLSLT 709
           NVTLT+    GES Y   + ++V                  YLE+         G +   
Sbjct: 247 NVTLTQNDVMGESLYNPMLPEIVADLKAQGLAVEDEGAQVVYLEEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+  +++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYHTLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKL++LLDE + R+ DKL  + + T L+  E +   +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRSGGTVKLTDLLDEAIERA-DKLISE-KSTALSSKEKAAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     I+ E
Sbjct: 424 VGIGSVKYADLSKNRTTDYVFDWDIMLSFEGNTAPYMQYAYTRIRSIFNKTDISEE 479



 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 100/178 (56%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E +   +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSSKEKAAVIEAVGIGSVKYADLSKNRTTDYVFDWDIMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     I+ E L  A     + L  EKE  LA  LL+  + + +V ++   H LC YL
Sbjct: 468  RSIFNKTDISEEQLHPA----KIQLTDEKERLLAIKLLQFEETVQIVGKEGTPHILCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  D E     V   RL LA  T K +K+  D+L I+TV KM
Sbjct: 524  YELAGLFSSFYEHCPILNNDNE----NVKLSRLKLALLTEKTLKQGLDLLGIKTVEKM 577



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA  K         NP D AQ +  ++         L  + +K+E A PG
Sbjct: 35  QFGDYQANGIMATAKKLG-----LNPRDFAQKVLDLI--------DLKNIAEKMEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL + +  E ++  + +     T+ +   ++VD+SSPN+A++
Sbjct: 82  FINIFLDKNWLAENIQVTLQDKKLGVTVEEIQTIVVDYSSPNVAKE 127


>gi|145641731|ref|ZP_01797307.1| arginyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145273545|gb|EDK13415.1| arginyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 419

 Score =  246 bits (629), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 143/367 (38%), Positives = 217/367 (59%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+    ++ ++   + DL+AFY+E+KK +DEDEIF ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLEKMQHEHASEM-ELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  Y+RLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRTMWKRLVDITMQQNQHNYNRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 ENDGALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/269 (37%), Positives = 147/269 (54%), Gaps = 52/269 (19%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+    ++ ++   + DL+AFY
Sbjct: 135 STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLEKMQHEHASEM-ELQDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  Y+RLNVTLTE+
Sbjct: 194 REAKKHYDEDEIFAEKARNYVVKLQSGDEYCRTMWKRLVDITMQQNQHNYNRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPSIVEDLKKQGLAVENDGALVVYLDEFKNKEGDPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+   ++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLEHKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRS 783
           LG+D K FKTR+G TVKL++LLDE + R+
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEAIERA 401



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             G+Q      K  V++D+SSPN+A++
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE 127


>gi|113461098|ref|YP_719166.1| arginyl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123132089|sp|Q0I3B0.1|SYR_HAES1 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|112823141|gb|ABI25230.1| arginyl-tRNA synthetase [Haemophilus somnus 129PT]
          Length = 577

 Score =  246 bits (629), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 149/399 (37%), Positives = 230/399 (57%), Gaps = 38/399 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA  K         NP D AQ +  ++         L  + +K+E+A PG
Sbjct: 35  QFGDYQANGIMATAKKLG-----LNPRDFAQKVLDLI--------DLKNIAEKMEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL + +  E I+  + +     T+ +   ++VD+SSPN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDKNWLAENIQVTLQDKKLGVTVEEIQTIVVDYSSPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +    +  +ADL+AFY+ +K+ +
Sbjct: 142 VVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMENEHASAMELADLEAFYRAAKEHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           D DE F ++A   VV LQ  D   +  W+ + D++ +  Q+ YDRLNVTLT+    GES 
Sbjct: 201 DNDETFAEKARNYVVKLQNGDAYCRTMWKKLVDITMQQNQRNYDRLNVTLTQNDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   D+G ++++ E   ++   PM ++  K DGGF Y T+D+AA
Sbjct: 261 YNPMLPEIVADLKAQGLAVEDEGAQVVYLEEFKNKDGDPMGVIVQKKDGGFLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R    KAD  +  +D  Q  H   ++++ +    I+R   Y+  D  +L H      
Sbjct: 321 AKYRYHTLKADRALVFSDTRQSQH---MQQAWL----ITRKAGYV-PDSFQLEH-----K 367

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 633
            FGM++   +D  P + T+S     L     E+ +R D+
Sbjct: 368 NFGMMLG--KDGKP-FKTRSGGTVKLTDLLDEAIERADK 403



 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 195/356 (54%), Gaps = 58/356 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +    +  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMENEHASAMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+AFY+ +K+ +D DE F ++A   VV LQ  D   +  W+ + D++ +  Q+ YDRL
Sbjct: 187 ADLEAFYRAAKEHYDNDETFAEKARNYVVKLQNGDAYCRTMWKKLVDITMQQNQRNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVP-----------------YLEK--------KGNLSLT 709
           NVTLT+    GES Y   + ++V                  YLE+         G +   
Sbjct: 247 NVTLTQNDVMGESLYNPMLPEIVADLKAQGLAVEDEGAQVVYLEEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+  +++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYHTLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKL++LLDE + R+ DKL  + + T L+  E +   +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRSGGTVKLTDLLDEAIERA-DKLISE-KSTALSSKEKAAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     I+ E
Sbjct: 424 VGIGSVKYADLSKNRTTDYVFDWDIMLSFEGNTAPYMQYAYTRIRSIFNKTDISEE 479



 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 100/178 (56%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E +   +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSSKEKAAVIEAVGIGSVKYADLSKNRTTDYVFDWDIMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     I+ E L  A     + L  EKE  LA  LL+  + + +V ++   H LC YL
Sbjct: 468  RSIFNKTDISEEQLHPA----KIQLTDEKERLLAIKLLQFEETVQIVGKEGTPHILCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  D E     V   RL LA  T K +K+  D+L I+TV KM
Sbjct: 524  YELAGLFSSFYEHCPILNNDNE----NVKLSRLKLALLTEKTLKQGLDLLGIKTVEKM 577



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA  K         NP D AQ +  ++         L  + +K+E A PG
Sbjct: 35  QFGDYQANGIMATAKKLG-----LNPRDFAQKVLDLI--------DLKNIAEKMEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL + +  E ++  + +     T+ +   ++VD+SSPN+A++      HL S I
Sbjct: 82  FINIFLDKNWLAENIQVTLQDKKLGVTVEEIQTIVVDYSSPNVAKE--MHVGHLRSTI 137


>gi|16273477|ref|NP_439728.1| arginyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|260580361|ref|ZP_05848190.1| arginyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|1174541|sp|P43832.1|SYR_HAEIN RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|1574424|gb|AAC23231.1| arginyl-tRNA synthetase (argS) [Haemophilus influenzae Rd KW20]
 gi|260093038|gb|EEW76972.1| arginyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 577

 Score =  246 bits (629), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 143/367 (38%), Positives = 214/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDE+F ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEVFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  Y RLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRTMWKRLVDITMQQNQHNYARLNVTLTEKDVMGESLYNPMLPSIVKDLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 ENDGALVVYLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/355 (40%), Positives = 192/355 (54%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDE+F ++A   VV LQ  D   +  W+ + D++ +  Q  Y RL
Sbjct: 187 QDLEAFYREAKKHYDEDEVFAEKARNYVVKLQSGDEYCRTMWKRLVDITMQQNQHNYARL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVKDLKKQGLAVENDGALVVYLDEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKEAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKEAVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    ++   RL LA  T K +K+   +L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDE----SIKLSRLKLALLTEKTLKQGLTLLGIKTVEKM 577



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|383310194|ref|YP_005363004.1| arginyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. HN06]
 gi|386834328|ref|YP_006239643.1| arginyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. 3480]
 gi|380871466|gb|AFF23833.1| arginyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. HN06]
 gi|385201029|gb|AFI45884.1| arginyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. 3480]
          Length = 577

 Score =  246 bits (628), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 154/422 (36%), Positives = 234/422 (55%), Gaps = 43/422 (10%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  + +H +Q A    G  T S A   +    +FGD+Q N  MA  K        +NP +
Sbjct: 3   IQSILSHKIQQAMIASGADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPRE 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN----GVQ 326
            AQ +   +         L+++ +KIE+A PGF+N+FL + +  EQI  + VN    G+Q
Sbjct: 58  FAQQVIEQL--------DLSEITEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQ 108

Query: 327 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 386
                    V+ D+SSPN+AKEMHVGHLRSTIIGD + R LE+LG+ V+R NHVGDWGTQ
Sbjct: 109 ATETQT---VVADYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNKVIRANHVGDWGTQ 165

Query: 387 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDY 446
           FGMLIA+L+ K  +       ++DL+AFY+ +K+ +D D +F ++A   VV LQ  D   
Sbjct: 166 FGMLIAYLE-KVENESASEMELSDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYC 224

Query: 447 KKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDDGR 503
           +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+++GL   D+G 
Sbjct: 225 RTMWKKLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGA 284

Query: 504 KIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
            +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D  Q  H
Sbjct: 285 FVVYLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQH 344

Query: 559 FRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 618
              ++++ +    I+R   Y+  D  +L H       FGM++      F      +  +A
Sbjct: 345 ---MQQAWL----ITRKAGYV-PDSFQLEH-----KNFGMMLGKDGKPFKTRTGGTVKLA 391

Query: 619 DL 620
           DL
Sbjct: 392 DL 393



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/360 (38%), Positives = 196/360 (54%), Gaps = 58/360 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KVENESASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D D +F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 SDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+++                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGAFVVYLDEFKNKEGEPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+  +++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   +++K+  T L+  E +   +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAVERATQLIQEKS--TALSAQEKAAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           VA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + +N +D  E
Sbjct: 424 VAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSELNEQDLSE 483



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 106/180 (58%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + T L+  E +   +AVA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  QEKSTALSAQEKAAVIEAVAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   + +N +DL      +PV L +EKE  LA  LL+  + + +V ++   H LC 
Sbjct: 466  RIRSIFNRSELNEQDL----SESPVVLSNEKERLLAIKLLQFEEAIQIVAKEGTPHVLCT 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY+++  FS FY++C  +  + E     +   RL LA  T K +K+  D+L I+TV KM
Sbjct: 522  YLYELAGVFSSFYEHCPILNNEDE----QIKRSRLKLALLTEKTLKQGLDLLGIKTVDKM 577



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 23/154 (14%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  + +H +Q A    G  T S A   +    +FGD+Q N  MA  K        +NP +
Sbjct: 3   IQSILSHKIQQAMIASGADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPRE 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN----GVQ 130
            AQ +   +         L+++ +KIE A PGF+N+FL + +  EQ+  + VN    G+Q
Sbjct: 58  FAQQVIEQL--------DLSEITEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQ 108

Query: 131 PPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                    V+ D+SSPN+A++      HL S I
Sbjct: 109 ATETQT---VVADYSSPNVAKE--MHVGHLRSTI 137


>gi|378774260|ref|YP_005176503.1| srginyl-tRNA synthase [Pasteurella multocida 36950]
 gi|356596808|gb|AET15534.1| srginyl-tRNA synthase [Pasteurella multocida 36950]
          Length = 577

 Score =  246 bits (628), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 154/422 (36%), Positives = 234/422 (55%), Gaps = 43/422 (10%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  + +H +Q A    G  T S A   +    +FGD+Q N  MA  K        +NP +
Sbjct: 3   IQSILSHKIQQAMIASGADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPRE 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN----GVQ 326
            AQ +   +         L+++ +KIE+A PGF+N+FL + +  EQI  + VN    G+Q
Sbjct: 58  FAQQVIEQL--------DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQ 108

Query: 327 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 386
                    V+ D+SSPN+AKEMHVGHLRSTIIGD + R LE+LG+ V+R NHVGDWGTQ
Sbjct: 109 ATETQT---VVADYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNKVIRANHVGDWGTQ 165

Query: 387 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDY 446
           FGMLIA+L+ K  +       ++DL+AFY+ +K+ +D D +F ++A   VV LQ  D   
Sbjct: 166 FGMLIAYLE-KVENESASEMELSDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYC 224

Query: 447 KKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDDGR 503
           +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+++GL   D+G 
Sbjct: 225 RTMWKKLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGA 284

Query: 504 KIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
            +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D  Q  H
Sbjct: 285 FVVYLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQH 344

Query: 559 FRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 618
              ++++ +    I+R   Y+  D  +L H       FGM++      F      +  +A
Sbjct: 345 ---MQQAWL----ITRKAGYV-PDSFQLEH-----KNFGMMLGKDGKPFKTRTGGTVKLA 391

Query: 619 DL 620
           DL
Sbjct: 392 DL 393



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/360 (38%), Positives = 196/360 (54%), Gaps = 58/360 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KVENESASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D D +F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 SDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+++                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGAFVVYLDEFKNKEGEPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+  +++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   +++K+  T L+  E +   +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAVERATQLIQEKS--TALSAQEKAAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           VA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + +N +D  E
Sbjct: 424 VAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSELNEQDLSE 483



 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 106/180 (58%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + T L+  E +   +AVA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  QEKSTALSAQEKAAVIEAVAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   + +N +DL      +PV L +EKE  LA  LL+  + +  V ++   H LC 
Sbjct: 466  RIRSIFNRSELNEQDL----SESPVVLSNEKERLLAIKLLQFEEAIQFVAKEGTPHVLCT 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY+++ AFS FY++C  +  + E     +   RL LA  T K +K+  D+L I+TV KM
Sbjct: 522  YLYELAGAFSSFYEHCPILNNEDE----QIKRSRLKLALLTEKTLKQGLDLLGIKTVDKM 577



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 23/154 (14%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  + +H +Q A    G  T S A   +    +FGD+Q N  MA  K        +NP +
Sbjct: 3   IQSILSHKIQQAMIASGADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPRE 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN----GVQ 130
            AQ +   +         L+++ +KIE A PGF+N+FL + +  EQ+  + VN    G+Q
Sbjct: 58  FAQQVIEQL--------DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQ 108

Query: 131 PPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                    V+ D+SSPN+A++      HL S I
Sbjct: 109 ATETQT---VVADYSSPNVAKE--MHVGHLRSTI 137


>gi|126176036|ref|YP_001052185.1| arginyl-tRNA synthetase [Shewanella baltica OS155]
 gi|386342792|ref|YP_006039158.1| arginyl-tRNA synthetase [Shewanella baltica OS117]
 gi|166232839|sp|A3D9A3.1|SYR_SHEB5 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|125999241|gb|ABN63316.1| arginyl-tRNA synthetase [Shewanella baltica OS155]
 gi|334865193|gb|AEH15664.1| arginyl-tRNA synthetase [Shewanella baltica OS117]
          Length = 581

 Score =  246 bits (628), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 156/398 (39%), Positives = 231/398 (58%), Gaps = 44/398 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K+       KNP ++AQ I       + T P+ A V  K+E+A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKNPRELAQLI-------IDTLPASAYVA-KVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F++     +Q+++ + +   G++ PT      V+VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFINDSALADQLQNAVNDEHLGIKLPTPQT---VVVDYSSPNLAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAFYKESKK 420
           ++ R LE+LGH V+R NHVGDWGTQFGML+A++++       K+   ++DL+ FY+ +K 
Sbjct: 145 SVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEKAQLELSDLENFYRAAKL 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y RL V+LT     GE
Sbjct: 205 RFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYARLGVSLTRADVHGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           S Y   +EQ+V  L+ +GLL   +G K+++ E     +   +P+ I K+DGG+ Y TSDL
Sbjct: 265 SAYNADLEQVVKDLDAQGLLTESNGAKVVFQEAFRNKEGEPLPVIIQKADGGYLYATSDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           AA+R R    KAD ++Y  DL Q +HF+ +        ++++L +++  D + L H+G +
Sbjct: 325 AAMRYRSNVLKADRVLYFVDLRQALHFQQVF-------SLAKLAKFVRED-MSLEHLG-F 375

Query: 593 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           GT  G      +D  P + T+S  +  L    +E+  R
Sbjct: 376 GTMNG------EDGRP-FKTRSGGVVKLVDLLEEANVR 406



 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 184/341 (53%), Gaps = 54/341 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAF 623
           STIIGD++ R LE+LGH V+R NHVGDWGTQFGML+A++++       K+   ++DL+ F
Sbjct: 139 STIIGDSVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEKAQLELSDLENF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y RL V+LT 
Sbjct: 199 YRAAKLRFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYARLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLS--------------------------------- 707
               GES Y   +EQ+V  L+ +G L+                                 
Sbjct: 259 ADVHGESAYNADLEQVVKDLDAQGLLTESNGAKVVFQEAFRNKEGEPLPVIIQKADGGYL 318

Query: 708 --------------LTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                         + K   ++Y  DL Q +HF+ +   AK A  +  + + ++ +GFG 
Sbjct: 319 YATSDLAAMRYRSNVLKADRVLYFVDLRQALHFQQVFSLAKLAKFVREDMS-LEHLGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTRSG  VKL +LL+E   R+L+ ++ KN   ++    L+E  + V    +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLVDLLEEANVRALELVRSKN--PDMDEATLTEIARVVGISAV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGI 476



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 108/188 (57%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++    L+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEATLTEIARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I +   +   DL  A     + LEHEKE  L   L +  ++L  V   
Sbjct: 464  PYLLYAYTRVAGIFKR--VTDLDLSQA----KIVLEHEKEKDLGNKLAQFGEILSRVVDK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YLY+++ AFS FY+ C  +  D + +       RLLLA+ TA+ ++K  ++L
Sbjct: 518  GQPHVLCAYLYELAGAFSSFYEACPVLAADNDAQ----KNSRLLLAQLTARTLQKGLNLL 573

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 574  GIETLERM 581



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 19/107 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K+       KNP ++AQ I       + T P+ A V  K+E A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKNPRELAQLI-------IDTLPASAYVA-KVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F++     +Q+++ + +   G++ PT      V+VD+SSPN+A++
Sbjct: 88  NFFINDSALADQLQNAVNDEHLGIKLPTPQT---VVVDYSSPNLAKE 131


>gi|161723314|ref|NP_245488.2| arginyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|425065339|ref|ZP_18468459.1| Arginyl-tRNA synthetase [Pasteurella multocida subsp. gallicida
           P1059]
 gi|404384203|gb|EJZ80646.1| Arginyl-tRNA synthetase [Pasteurella multocida subsp. gallicida
           P1059]
          Length = 577

 Score =  246 bits (628), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 154/422 (36%), Positives = 234/422 (55%), Gaps = 43/422 (10%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  + +H +Q A    G  T S A   +    +FGD+Q N  MA  K        +NP +
Sbjct: 3   IQSILSHKIQQAMIASGADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPRE 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN----GVQ 326
            AQ +   +         L+++ +KIE+A PGF+N+FL + +  EQI  + VN    G+Q
Sbjct: 58  FAQQVIEQL--------DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQ 108

Query: 327 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 386
                    V+ D+SSPN+AKEMHVGHLRSTIIGD + R LE+LG+ V+R NHVGDWGTQ
Sbjct: 109 ATETQT---VVADYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNKVIRANHVGDWGTQ 165

Query: 387 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDY 446
           FGMLIA+L+ K  +       ++DL+AFY+ +K+ +D D +F ++A   VV LQ  D   
Sbjct: 166 FGMLIAYLE-KVENESASEMELSDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYC 224

Query: 447 KKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDDGR 503
           +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+++GL   D+G 
Sbjct: 225 RTMWKKLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGA 284

Query: 504 KIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
            +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D  Q  H
Sbjct: 285 FVVYLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQH 344

Query: 559 FRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 618
              ++++ +    I+R   Y+  D  +L H       FGM++      F      +  +A
Sbjct: 345 ---MQQAWL----ITRKAGYV-PDSFQLEH-----KNFGMMLGKDGKPFKTRTGGTVKLA 391

Query: 619 DL 620
           DL
Sbjct: 392 DL 393



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/360 (38%), Positives = 196/360 (54%), Gaps = 58/360 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KVENESASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D D +F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 SDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+++                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGAFVVYLDEFKNKEGEPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+  +++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   +++K+  T L+  E +   +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAVERATQLIQEKS--TALSAQEKAAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           VA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + +N +D  E
Sbjct: 424 VAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSELNEQDLSE 483



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 106/180 (58%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + T L+  E +   +AVA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  QEKSTALSAQEKAAVIEAVAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   + +N +DL      +PV L +EKE  LA  LL+  + + +V ++   H LC 
Sbjct: 466  RIRSIFNRSELNEQDL----SESPVVLSNEKERLLAIKLLQFEEAIQIVAKEGTPHVLCT 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY+++  FS FY++C  +  + E     +   RL LA  T K +K+  D+L I+TV KM
Sbjct: 522  YLYELAGVFSSFYEHCPILNNEDE----QIKRSRLKLALLTEKTLKQGLDLLGIKTVDKM 577



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 23/154 (14%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  + +H +Q A    G  T S A   +    +FGD+Q N  MA  K        +NP +
Sbjct: 3   IQSILSHKIQQAMIASGADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPRE 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN----GVQ 130
            AQ +   +         L+++ +KIE A PGF+N+FL + +  EQ+  + VN    G+Q
Sbjct: 58  FAQQVIEQL--------DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQ 108

Query: 131 PPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                    V+ D+SSPN+A++      HL S I
Sbjct: 109 ATETQT---VVADYSSPNVAKE--MHVGHLRSTI 137


>gi|425063240|ref|ZP_18466365.1| Arginyl-tRNA synthetase [Pasteurella multocida subsp. gallicida
           X73]
 gi|404382803|gb|EJZ79260.1| Arginyl-tRNA synthetase [Pasteurella multocida subsp. gallicida
           X73]
          Length = 577

 Score =  246 bits (627), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 154/422 (36%), Positives = 234/422 (55%), Gaps = 43/422 (10%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  + +H +Q A    G  T S A   +    +FGD+Q N  MA  K        +NP +
Sbjct: 3   IQSILSHKIQQAMIASGADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPRE 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN----GVQ 326
            AQ +   +         L+++ +KIE+A PGF+N+FL + +  EQI  + VN    G+Q
Sbjct: 58  FAQQVIEQL--------DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQ 108

Query: 327 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 386
                    V+ D+SSPN+AKEMHVGHLRSTIIGD + R LE+LG+ V+R NHVGDWGTQ
Sbjct: 109 ATETQT---VVADYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNKVIRANHVGDWGTQ 165

Query: 387 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDY 446
           FGMLIA+L+ K  +       ++DL+AFY+ +K+ +D D +F ++A   VV LQ  D   
Sbjct: 166 FGMLIAYLE-KVENESASEMELSDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYC 224

Query: 447 KKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDDGR 503
           +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+++GL   D+G 
Sbjct: 225 RTMWKKLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGA 284

Query: 504 KIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
            +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D  Q  H
Sbjct: 285 FVVYLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQH 344

Query: 559 FRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 618
              ++++ +    I+R   Y+  D  +L H       FGM++      F      +  +A
Sbjct: 345 ---MQQAWL----ITRKAGYV-PDSFQLEH-----KNFGMMLGKDGKPFKTRTGGTVKLA 391

Query: 619 DL 620
           DL
Sbjct: 392 DL 393



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/360 (38%), Positives = 196/360 (54%), Gaps = 58/360 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KVENESASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D D +F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 SDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+++                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGAFVVYLDEFKNKEGEPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+  +++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   +++K+  T L+  E +   +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAVERATQLIQEKS--TALSAQEKAAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           VA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + +N +D  E
Sbjct: 424 VAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSELNEQDLSE 483



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 105/180 (58%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + T L+  E +   +AVA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  QEKSTALSAQEKAAVIEAVAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   + +N +DL      +PV L +EKE  LA  LL+  + + +V ++   H LC 
Sbjct: 466  RIRSIFNRSELNEQDL----SESPVVLSNEKERLLAIKLLQFEEAIQIVAKEGTPHVLCT 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY+++  FS FY+ C  +  + E     +   RL LA  T K +K+  D+L I+TV KM
Sbjct: 522  YLYELAGVFSSFYEYCPILNNEDE----QIKRSRLKLALLTEKTLKQGLDLLGIKTVDKM 577



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 23/154 (14%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  + +H +Q A    G  T S A   +    +FGD+Q N  MA  K        +NP +
Sbjct: 3   IQSILSHKIQQAMIASGADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPRE 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN----GVQ 130
            AQ +   +         L+++ +KIE A PGF+N+FL + +  EQ+  + VN    G+Q
Sbjct: 58  FAQQVIEQL--------DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQ 108

Query: 131 PPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                    V+ D+SSPN+A++      HL S I
Sbjct: 109 ATETQT---VVADYSSPNVAKE--MHVGHLRSTI 137


>gi|309751074|gb|ADO81058.1| Arginyl-tRNA synthetase [Haemophilus influenzae R2866]
          Length = 577

 Score =  246 bits (627), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 213/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K          + DL+AFY+E+KK +DEDEIF ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQHEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  Y RLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRTMWKRLVDITMQQNQYNYARLNVTLTEKDVMGESLYNPMLPSIVKDLKKQGLAV 279

Query: 499 LDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++    +++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 ENDGALVVYLYEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/355 (40%), Positives = 191/355 (53%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K          +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQHEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+AFY+E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  Y RL
Sbjct: 187 QDLEAFYREAKKHYDEDEIFAEKARNYVVKLQSGDEYCRTMWKRLVDITMQQNQYNYARL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVKDLKKQGLAVENDGALVVYLYEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKESVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 424 VGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 101/178 (56%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKESVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E     V   RL LA  T K +K+   +L I+TV KM
Sbjct: 524  YELAGIFSSFYEHCPILNAEDEA----VKLSRLKLALLTEKTLKQGLTLLGIKTVEKM 577



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             G+Q      K  V++D+SSPN+A++
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE 127


>gi|417853169|ref|ZP_12498591.1| arginyl-tRNA synthetase [Pasteurella multocida subsp. gallicida
           str. Anand1_poultry]
 gi|338215452|gb|EGP01729.1| arginyl-tRNA synthetase [Pasteurella multocida subsp. gallicida
           str. Anand1_poultry]
          Length = 577

 Score =  246 bits (627), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 154/422 (36%), Positives = 234/422 (55%), Gaps = 43/422 (10%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  + +H +Q A    G  T S A   +    +FGD+Q N  MA  K        +NP +
Sbjct: 3   IQSILSHKIQQAMIASGADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPRE 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN----GVQ 326
            AQ +   +         L+++ +KIE+A PGF+N+FL + +  EQI  + VN    G+Q
Sbjct: 58  FAQQVIEQL--------DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQ 108

Query: 327 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 386
                    V+ D+SSPN+AKEMHVGHLRSTIIGD + R LE+LG+ V+R NHVGDWGTQ
Sbjct: 109 ATETQT---VVADYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNKVIRANHVGDWGTQ 165

Query: 387 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDY 446
           FGMLIA+L+ K  +       ++DL+AFY+ +K+ +D D +F ++A   VV LQ  D   
Sbjct: 166 FGMLIAYLE-KVENESASEMELSDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYC 224

Query: 447 KKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDDGR 503
           +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+++GL   D+G 
Sbjct: 225 RTMWKKLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGA 284

Query: 504 KIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
            +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D  Q  H
Sbjct: 285 FVVYLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQH 344

Query: 559 FRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 618
              ++++ +    I+R   Y+  D  +L H       FGM++      F      +  +A
Sbjct: 345 ---MQQAWL----ITRKAGYV-PDSFQLEH-----KNFGMILGKDGKPFKTRTGGTVKLA 391

Query: 619 DL 620
           DL
Sbjct: 392 DL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/360 (37%), Positives = 195/360 (54%), Gaps = 58/360 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KVENESASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D D +F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 SDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+++                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGAFVVYLDEFKNKEGEPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+  +++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LL+E + R+   +++K+  T L+  E +   +A
Sbjct: 366 HKNFGMILGKDGKPFKTRTGGTVKLADLLNEAVERATQLIQEKS--TALSAQEKAAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           VA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + +N  D  E
Sbjct: 424 VAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSELNELDLSE 483



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 105/180 (58%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + T L+  E +   +AVA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  QEKSTALSAQEKAAVIEAVAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   + +N  DL      +PV L +EKE  LA  LL+  + + +V ++   H LC 
Sbjct: 466  RIRSIFNRSELNELDL----SESPVVLSNEKERLLAIKLLQFEEAIQIVAKEGTPHVLCT 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY+++  FS FY++C  +  + E     +   RL LA  T K +K+  D+L I+TV KM
Sbjct: 522  YLYELAGVFSSFYEHCPILNNEDE----QIKRSRLKLALLTEKTLKQGLDLLGIKTVDKM 577



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 23/154 (14%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  + +H +Q A    G  T S A   +    +FGD+Q N  MA  K        +NP +
Sbjct: 3   IQSILSHKIQQAMIASGADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPRE 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN----GVQ 130
            AQ +   +         L+++ +KIE A PGF+N+FL + +  EQ+  + VN    G+Q
Sbjct: 58  FAQQVIEQL--------DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQ 108

Query: 131 PPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                    V+ D+SSPN+A++      HL S I
Sbjct: 109 ATETQT---VVADYSSPNVAKE--MHVGHLRSTI 137


>gi|83643984|ref|YP_432419.1| arginyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|109894996|sp|Q2SMY0.1|SYR_HAHCH RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|83632027|gb|ABC27994.1| arginyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 578

 Score =  246 bits (627), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 138/359 (38%), Positives = 206/359 (57%), Gaps = 23/359 (6%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           L  +    +  A    G    S A        +FGD+Q N  M   K  K      NP +
Sbjct: 3   LQQLLEQKISAALHAAGAPEGSPAIVKPSGKPQFGDYQANGVMGAAKALK-----MNPRE 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG-VQPPT 329
           +A  +  V+         L  + +K+E+A PGF+N+FLS+ +  + ++ ++ +  +  P 
Sbjct: 58  LATKVLDVL--------DLGDMAEKVEIAGPGFINIFLSKDWMSQSLRQVLADPRLTIPL 109

Query: 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
            + K  V+VD+S+PN+AKEMHVGHLRSTIIGD + R LE+LGH V+R NHVGDWGTQFGM
Sbjct: 110 DSPKQTVVVDYSAPNLAKEMHVGHLRSTIIGDAVVRTLEFLGHRVIRQNHVGDWGTQFGM 169

Query: 390 LIAHLQD-KFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
           L+A++   K  +  T S  +ADL+ FY+++K  FDED  FK  A Q VV LQ  D +   
Sbjct: 170 LLAYMNKLKAENQQTLSMELADLENFYRQAKTCFDEDPEFKDSARQYVVKLQSGDQECVS 229

Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
            W+   D+S +  + +Y+RLNV+LT      ES Y + +  ++  L +KGLL   DG + 
Sbjct: 230 LWKTFIDISLQHCEDVYERLNVSLTRADVMPESAYNEDLPNVIDDLREKGLLTNSDGAEC 289

Query: 506 MW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           ++     G+D  ++P+ + KSDGG+ Y T+DLAA+R R    KA+ ++Y  D  Q +H 
Sbjct: 290 VFMDEFKGKDDETLPLIVKKSDGGYLYATTDLAALRYRERVLKANRVLYFVDARQSLHL 348



 Score =  212 bits (540), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 128/349 (36%), Positives = 185/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD + R LE+LGH V+R NHVGDWGTQFGML+A++   K  +  T S  +ADL+ F
Sbjct: 136 STIIGDAVVRTLEFLGHRVIRQNHVGDWGTQFGMLLAYMNKLKAENQQTLSMELADLENF 195

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+++K  FDED  FK  A Q VV LQ  D +    W+   D+S +  + +Y+RLNV+LT 
Sbjct: 196 YRQAKTCFDEDPEFKDSARQYVVKLQSGDQECVSLWKTFIDISLQHCEDVYERLNVSLTR 255

Query: 684 RG---ESFYQKHMEQLVPYLEKKGNLS--------------------------------- 707
                ES Y + +  ++  L +KG L+                                 
Sbjct: 256 ADVMPESAYNEDLPNVIDDLREKGLLTNSDGAECVFMDEFKGKDDETLPLIVKKSDGGYL 315

Query: 708 --------------LTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                         + K   ++Y  D  Q +H   +    +KAG ++P+ + ++ + FG+
Sbjct: 316 YATTDLAALRYRERVLKANRVLYFVDARQSLHLNQVYAAGRKAGFVSPDMS-LEHMAFGM 374

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           VLG D K FKTR G TVKL++LL E   R+   +K KN   E+   EL+     V    +
Sbjct: 375 VLGADGKPFKTRDGGTVKLADLLTEAQGRAYAVVKGKN--PEMPEEELNRIAHVVGMAAV 432

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           KYADLS NR+ DY+FSFD ML   GNTA Y+ YAY+R+ ++ +   + +
Sbjct: 433 KYADLSKNRSSDYIFSFDAMLSLEGNTAPYVQYAYSRVVNVFKKGEVGN 481



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 105/184 (57%), Gaps = 18/184 (9%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ E+   EL+     V    +KYADLS NR+ DY+FSFD ML   GNTA Y+ YAY+
Sbjct: 409  KGKNPEMPEEELNRIAHVVGMAAVKYADLSKNRSSDYIFSFDAMLSLEGNTAPYVQYAYS 468

Query: 1000 RIASIARTAGINS----EDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            R+ ++ +   + +     DL++A    P+      E ALA  LL+ N++L  V  + C H
Sbjct: 469  RVVNVFKKGEVGNLTFEGDLQLA---EPI------ERALAVRLLQFNEILHSVASEGCPH 519

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1115
             LC YLYD+S  F+ FY+ C  ++ +     + V + RL+L+   AK +K+  D+L I T
Sbjct: 520  ILCGYLYDLSKEFASFYEGCPVLKAE-----EPVRSSRLMLSLLIAKTLKQGLDLLGIET 574

Query: 1116 VHKM 1119
            + +M
Sbjct: 575  LERM 578



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 14/139 (10%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           L  +    +  A    G    S A        +FGD+Q N  M   K  K      NP +
Sbjct: 3   LQQLLEQKISAALHAAGAPEGSPAIVKPSGKPQFGDYQANGVMGAAKALK-----MNPRE 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG-VQPPT 133
           +A  +  V+         L  + +K+E A PGF+N+FLS+ +  + ++ ++ +  +  P 
Sbjct: 58  LATKVLDVL--------DLGDMAEKVEIAGPGFINIFLSKDWMSQSLRQVLADPRLTIPL 109

Query: 134 LNKKLRVLVDFSSPNIARK 152
            + K  V+VD+S+PN+A++
Sbjct: 110 DSPKQTVVVDYSAPNLAKE 128


>gi|152993784|ref|YP_001359505.1| arginyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|151425645|dbj|BAF73148.1| arginyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 565

 Score =  246 bits (627), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 148/390 (37%), Positives = 230/390 (58%), Gaps = 35/390 (8%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           L +     ++ AF + G     + S +E    +FGD+Q N AMAL K  +     KNP +
Sbjct: 3   LKEEVNKVIKAAFDKAGIDAEPI-SVSEATKPEFGDYQFNGAMALSKKLR-----KNPRE 56

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQP 327
           IA        SE+  +   + ++ K E+A PGF+N++L+  +  +  +    +   G++ 
Sbjct: 57  IA--------SEIMEHLDFSGIVAKAEIAGPGFINLWLNDTWVAQACEKARADERLGIEK 108

Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
            +    ++V+VD+S PN+AK+MHVGHLRSTIIGDT++ LLE+LG +V+R NH+GDWGTQF
Sbjct: 109 TS--NPIKVVVDYSGPNMAKQMHVGHLRSTIIGDTLANLLEFLGDEVIRQNHIGDWGTQF 166

Query: 388 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           GMLIA+L+++  D    S  + DL+ FYK++KKRFDEDE F  +A + VV +Q  D    
Sbjct: 167 GMLIAYLEERGED---GSGSLKDLEQFYKDAKKRFDEDEAFADKAREYVVKIQSGDEHCL 223

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
             W+   D+S    +++YD+L V LT    + ESFY + + ++V  L K+G L   +G +
Sbjct: 224 NLWQKFIDISLGHCEEVYDKLCVRLTREDVKAESFYNEDLPEVVADLAKEGRLRESEGAQ 283

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
            ++ E+   IP+ + K DGG+ Y T+DLAA+R R     A  I YV D  QG HF+ + +
Sbjct: 284 CVFFEE-DEIPVIVQKGDGGYLYATTDLAALRYRANILGAKRISYVVDARQGEHFKQIFK 342

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
                  ++++  ++  D VRL HV  +GT
Sbjct: 343 -------VAKMSGFVPKD-VRLEHVA-FGT 363



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/339 (38%), Positives = 194/339 (57%), Gaps = 51/339 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDT++ LLE+LG +V+R NH+GDWGTQFGMLIA+L+++  D    S  + DL+ FY
Sbjct: 135 STIIGDTLANLLEFLGDEVIRQNHIGDWGTQFGMLIAYLEERGED---GSGSLKDLEQFY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           K++KKRFDEDE F  +A + VV +Q  D      W+   D+S    +++YD+L V LT  
Sbjct: 192 KDAKKRFDEDEAFADKAREYVVKIQSGDEHCLNLWQKFIDISLGHCEEVYDKLCVRLTRE 251

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKK------------------------------ 711
             + ESFY + + ++V  L K+G L  ++                               
Sbjct: 252 DVKAESFYNEDLPEVVADLAKEGRLRESEGAQCVFFEEDEIPVIVQKGDGGYLYATTDLA 311

Query: 712 --------LG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 760
                   LG   I YV D  QG HF+ + + AK +G + P   R++ V FG ++ +  K
Sbjct: 312 ALRYRANILGAKRISYVVDARQGEHFKQIFKVAKMSGFV-PKDVRLEHVAFGTMMDKGGK 370

Query: 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH 820
            FKTR G TVKL +LLDE + ++   +K+K+ ++E    E+ +  + +  G +KYADLS 
Sbjct: 371 PFKTRDGGTVKLIDLLDEAVVKAKAAIKEKDDYSE---EEVEKLAKTIGIGAVKYADLSI 427

Query: 821 NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           NR  +Y+F++DKML   GNT++Y+ YAY RI SI R  G
Sbjct: 428 NRESNYIFNWDKMLSFEGNTSLYMQYAYARIQSIFRRYG 466



 Score =  103 bits (257), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 99/183 (54%), Gaps = 14/183 (7%)

Query: 937  LKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLY 996
            +K+K+ ++E    E+ +  + +  G +KYADLS NR  +Y+F++DKML   GNT++Y+ Y
Sbjct: 397  IKEKDDYSE---EEVEKLAKTIGIGAVKYADLSINRESNYIFNWDKMLSFEGNTSLYMQY 453

Query: 997  AYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHH 1056
            AY RI SI R  G + +   V       +LEH     L   LLR  ++L     D   + 
Sbjct: 454  AYARIQSIFRRYGGDIKGDIVITD----ALEHR----LGVMLLRFEEILERAAEDAAPNQ 505

Query: 1057 LCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTV 1116
            +  YLY++ T F  FY+    ++   EG  +     RL LA+ TAK +K+  DIL I  V
Sbjct: 506  ITTYLYELVTLFMRFYEQNPILK---EGVDEATKQSRLALADMTAKTIKQGLDILGIEVV 562

Query: 1117 HKM 1119
             K+
Sbjct: 563  DKL 565



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 21/153 (13%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           L +     ++ AF + G     + S +E    +FGD+Q N AMAL K  +     KNP +
Sbjct: 3   LKEEVNKVIKAAFDKAGIDAEPI-SVSEATKPEFGDYQFNGAMALSKKLR-----KNPRE 56

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQP 131
           IA        SE+  +   + ++ K E A PGF+N++L+  +  +  +    +   G++ 
Sbjct: 57  IA--------SEIMEHLDFSGIVAKAEIAGPGFINLWLNDTWVAQACEKARADERLGIEK 108

Query: 132 PTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
            +    ++V+VD+S PN+A++      HL S I
Sbjct: 109 TS--NPIKVVVDYSGPNMAKQ--MHVGHLRSTI 137


>gi|152999024|ref|YP_001364705.1| arginyl-tRNA synthetase [Shewanella baltica OS185]
 gi|160873617|ref|YP_001552933.1| arginyl-tRNA synthetase [Shewanella baltica OS195]
 gi|217971704|ref|YP_002356455.1| arginyl-tRNA synthetase [Shewanella baltica OS223]
 gi|373951138|ref|ZP_09611099.1| Arginyl-tRNA synthetase [Shewanella baltica OS183]
 gi|378706857|ref|YP_005271751.1| arginyl-tRNA synthetase [Shewanella baltica OS678]
 gi|386323043|ref|YP_006019160.1| arginyl-tRNA synthetase [Shewanella baltica BA175]
 gi|418025707|ref|ZP_12664684.1| Arginyl-tRNA synthetase [Shewanella baltica OS625]
 gi|166232840|sp|A6WIK3.1|SYR_SHEB8 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|189083547|sp|A9KYS9.1|SYR_SHEB9 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|254782981|sp|B8E6G9.1|SYR_SHEB2 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|151363642|gb|ABS06642.1| arginyl-tRNA synthetase [Shewanella baltica OS185]
 gi|160859139|gb|ABX47673.1| arginyl-tRNA synthetase [Shewanella baltica OS195]
 gi|217496839|gb|ACK45032.1| arginyl-tRNA synthetase [Shewanella baltica OS223]
 gi|315265846|gb|ADT92699.1| arginyl-tRNA synthetase [Shewanella baltica OS678]
 gi|333817188|gb|AEG09854.1| Arginyl-tRNA synthetase [Shewanella baltica BA175]
 gi|353534968|gb|EHC04533.1| Arginyl-tRNA synthetase [Shewanella baltica OS625]
 gi|373887738|gb|EHQ16630.1| Arginyl-tRNA synthetase [Shewanella baltica OS183]
          Length = 581

 Score =  246 bits (627), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 156/398 (39%), Positives = 231/398 (58%), Gaps = 44/398 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K+       KNP ++AQ I       + T P+ A V  K+E+A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKNPRELAQLI-------IDTLPASAYVA-KVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F++     +Q+++ + +   G++ PT      V+VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFINDSALADQLQNAVNDEHLGIKLPTPQT---VVVDYSSPNLAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAFYKESKK 420
           ++ R LE+LGH V+R NHVGDWGTQFGML+A++++       K+   ++DL+ FY+ +K 
Sbjct: 145 SVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEKAQLELSDLENFYRAAKL 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y RL V+LT     GE
Sbjct: 205 RFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYARLGVSLTRADVHGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           S Y   +EQ+V  L+ +GLL   +G K+++ E     +   +P+ I K+DGG+ Y TSDL
Sbjct: 265 SAYNADLEQVVKDLDAQGLLTESNGAKVVFQEAFRNKEGEPLPVIIQKADGGYLYATSDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           AA+R R    KAD ++Y  DL Q +HF+ +        ++++L +++  D + L H+G +
Sbjct: 325 AAMRYRSNVLKADRVLYFVDLRQALHFQQVF-------SLAKLAKFVRED-MSLEHLG-F 375

Query: 593 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           GT  G      +D  P + T+S  +  L    +E+  R
Sbjct: 376 GTMNG------EDGRP-FKTRSGGVVKLVDLLEEANVR 406



 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 184/341 (53%), Gaps = 54/341 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAF 623
           STIIGD++ R LE+LGH V+R NHVGDWGTQFGML+A++++       K+   ++DL+ F
Sbjct: 139 STIIGDSVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEKAQLELSDLENF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y RL V+LT 
Sbjct: 199 YRAAKLRFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYARLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLS--------------------------------- 707
               GES Y   +EQ+V  L+ +G L+                                 
Sbjct: 259 ADVHGESAYNADLEQVVKDLDAQGLLTESNGAKVVFQEAFRNKEGEPLPVIIQKADGGYL 318

Query: 708 --------------LTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                         + K   ++Y  DL Q +HF+ +   AK A  +  + + ++ +GFG 
Sbjct: 319 YATSDLAAMRYRSNVLKADRVLYFVDLRQALHFQQVFSLAKLAKFVREDMS-LEHLGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTRSG  VKL +LL+E   R+L+ ++ KN   ++    L+E  + V    +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLVDLLEEANVRALELVRSKN--PDMDEVTLTEIARVVGISAV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGI 476



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 108/188 (57%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++    L+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEVTLTEIARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I +   +   DL  A     + LEHEKE  L   L +  ++L  V   
Sbjct: 464  PYLLYAYTRVAGIFKR--VTDLDLSQA----KIVLEHEKEKDLGNKLAQFGEILSRVVDK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YLY+++ AFS FY+ C  +  D + +       RLLLA+ TA+ ++K  ++L
Sbjct: 518  GQPHVLCAYLYELAGAFSSFYEACPVLAADNDAQ----KNSRLLLAQLTARTLQKGLNLL 573

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 574  GIETLERM 581



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 19/107 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K+       KNP ++AQ I       + T P+ A V  K+E A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKNPRELAQLI-------IDTLPASAYVA-KVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F++     +Q+++ + +   G++ PT      V+VD+SSPN+A++
Sbjct: 88  NFFINDSALADQLQNAVNDEHLGIKLPTPQT---VVVDYSSPNLAKE 131


>gi|120600411|ref|YP_964985.1| arginyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|166232844|sp|A1RP36.1|SYR_SHESW RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|120560504|gb|ABM26431.1| arginyl-tRNA synthetase [Shewanella sp. W3-18-1]
          Length = 581

 Score =  246 bits (627), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 154/398 (38%), Positives = 231/398 (58%), Gaps = 44/398 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K+       KNP ++AQ I       + T P+ A  + K+E+A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKNPRELAQLI-------IDTLPASA-FVAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F++     +Q+++ + +   G++ PT      V+VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFINDSALADQLQNAVNDEHLGIKLPTPQT---VVVDYSSPNLAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKK 420
           ++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K 
Sbjct: 145 SVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEQAHLELSDLETFYRAAKL 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y RL V+LT     GE
Sbjct: 205 RFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYARLGVSLTRADVHGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           S Y   +EQ+V  L+ +GLL   +G K+++ E     +   +P+ I K+DGG+ Y TSDL
Sbjct: 265 SAYNADLEQVVKDLDAQGLLTESNGAKVVFQEAFRNKEGEPLPVIIQKADGGYLYATSDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           AA+R R    KAD ++Y  DL Q +HF+ +        ++++L +++  D + L H+G +
Sbjct: 325 AAMRYRSNVLKADRVLYFVDLRQALHFQQVF-------SLAKLAKFVRED-MSLEHLG-F 375

Query: 593 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           GT  G      +D  P + T+S  +  L    +E+  R
Sbjct: 376 GTMNG------EDGRP-FKTRSGGVVKLVDLLEEANVR 406



 Score =  216 bits (550), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 188/349 (53%), Gaps = 55/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEQAHLELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y RL V+LT 
Sbjct: 199 YRAAKLRFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYARLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLS--------------------------------- 707
               GES Y   +EQ+V  L+ +G L+                                 
Sbjct: 259 ADVHGESAYNADLEQVVKDLDAQGLLTESNGAKVVFQEAFRNKEGEPLPVIIQKADGGYL 318

Query: 708 --------------LTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                         + K   ++Y  DL Q +HF+ +   AK A  +  + + ++ +GFG 
Sbjct: 319 YATSDLAAMRYRSNVLKADRVLYFVDLRQALHFQQVFSLAKLAKFVREDMS-LEHLGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTRSG  VKL +LL+E   R+L+ ++ KN   ++    L+E  + V    +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLVDLLEEANVRALELVRSKN--PDMDEETLAEIARVVGISAV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI-ARTAGIN 861
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I  R  G++
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRVTGLD 484



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 108/189 (57%), Gaps = 14/189 (7%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++    L+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEETLAEIARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASI-ARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
             YLLYAYTR+A I  R  G++    ++        LEHEKE  L   L +  ++L  V  
Sbjct: 464  PYLLYAYTRVAGIFKRVTGLDLSQAKIV-------LEHEKEKDLGNKLAQFGEILNRVVD 516

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H LC YLY+++ AFS FY+ C  +  D + +       RLLL++ TA+ ++K  ++
Sbjct: 517  KGQPHVLCAYLYELAGAFSSFYEACPVLAADNDEQ----KNSRLLLSQLTARTLQKGLNL 572

Query: 1111 LNIRTVHKM 1119
            L I T+ +M
Sbjct: 573  LGIETLERM 581



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 19/107 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K+       KNP ++AQ I       + T P+ A  + K+E A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKNPRELAQLI-------IDTLPASA-FVAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F++     +Q+++ + +   G++ PT      V+VD+SSPN+A++
Sbjct: 88  NFFINDSALADQLQNAVNDEHLGIKLPTPQT---VVVDYSSPNLAKE 131


>gi|145639894|ref|ZP_01795494.1| arginyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|145270985|gb|EDK10902.1| arginyl-tRNA synthetase [Haemophilus influenzae PittII]
          Length = 581

 Score =  246 bits (627), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 213/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   +I   + + 
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+Q      K  V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K          + DL+AFY+E+KK +DEDEIF ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQHEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ +  Q  Y RLNVTLTE+   GES Y   +  +V  L+K+GL  
Sbjct: 220 GDEYCRTMWKRLVDITMQQNQYNYARLNVTLTEKDVMGESLYNPMLPSIVKDLKKQGLAV 279

Query: 499 LDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            +DG  +++    +++   PM ++  K DGGF Y T+D+AA + R E  KA+  +  +D 
Sbjct: 280 ENDGALVVYLYEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 141/348 (40%), Positives = 189/348 (54%), Gaps = 54/348 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K          + DL+AFY
Sbjct: 135 STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQHEHASEMELQDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +DEDEIF ++A   VV LQ  D   +  W+ + D++ +  Q  Y RLNVTLTE+
Sbjct: 194 REAKKHYDEDEIFAEKARNYVVKLQSGDEYCRTMWKRLVDITMQQNQYNYARLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPSIVKDLKKQGLAVENDGALVVYLYEFKNKDGDPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+   ++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLEHKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   + +KN  T L+  E     +AV  G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKESVIEAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     INS
Sbjct: 431 YADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDINS 478



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 100/177 (56%), Gaps = 8/177 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E     +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTNLSNDEKESVIEAVGIGAVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     INS  L  A    P++++ +KE  LA  LL+  + +  V ++   H LC YL
Sbjct: 468  RSIFNKTDINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHK 1118
            Y+++  FS FY++C  +  + E     V   RL LA  T K +K+   +L I+TV K
Sbjct: 524  YELAGIFSSFYEHCPILNAEDEA----VKLSRLKLALLTEKTLKQGLTLLGIKTVEK 576



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALIRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   + + 
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+Q      K  V++D+SSPN+A++      HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|388257986|ref|ZP_10135164.1| arginyl-tRNA synthetase [Cellvibrio sp. BR]
 gi|387938107|gb|EIK44660.1| arginyl-tRNA synthetase [Cellvibrio sp. BR]
          Length = 579

 Score =  245 bits (626), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 140/349 (40%), Positives = 204/349 (58%), Gaps = 28/349 (8%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGD+Q N AM   K         NP ++A  I + +         L  + +K+E+A PGF
Sbjct: 36  FGDYQANCAMGAAKAMG-----TNPRELAAKIVAAL--------ELDGIAEKLEIAGPGF 82

Query: 304 VNVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           +N+ L+  + GEQI     +  +Q   +     +++D+S PN+AKEMHVGHLRSTIIGD+
Sbjct: 83  INIDLNPQWLGEQIAKAQSDARLQVEQVADAQNIVIDYSGPNLAKEMHVGHLRSTIIGDS 142

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           ++RLLE+ GH+V+R NHVGDWGTQFGMLIA L+++       +  + DL+ FY+++KK F
Sbjct: 143 LARLLEFQGHNVIRQNHVGDWGTQFGMLIAELEEQLGAKGDDAMALKDLEVFYQQAKKHF 202

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           D+DE F  +A + VV LQ  D    K WE    +S     +IY +LNVTL +   RGESF
Sbjct: 203 DDDENFANKAREYVVRLQGGDAQMLKLWEQFKTISLHHSSEIYQQLNVTLKDSDVRGESF 262

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAA 534
           Y   +E LV  L+ +GL    DG ++++ ++         P+ I K  GGF Y T+DLAA
Sbjct: 263 YNNDLEPLVNELQTQGLAVESDGAQVVFLQELADKEGNPSPVIIQKQGGGFLYATTDLAA 322

Query: 535 IRQRIEEEKADWIVYVTDLGQGVH----FRLLEESTIIGDTISRLLEYL 579
           +R R+   KA  I+Y  D  Q +H    F L  ++  + D++S  LE+L
Sbjct: 323 LRYRVNTLKAKRIMYFIDARQSLHMQQVFTLSRKAKFVDDSVS--LEHL 369



 Score =  229 bits (584), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 139/356 (39%), Positives = 197/356 (55%), Gaps = 57/356 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD+++RLLE+ GH+V+R NHVGDWGTQFGMLIA L+++       +  +
Sbjct: 133 HLR----STIIGDSLARLLEFQGHNVIRQNHVGDWGTQFGMLIAELEEQLGAKGDDAMAL 188

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+ FY+++KK FD+DE F  +A + VV LQ  D    K WE    +S     +IY +L
Sbjct: 189 KDLEVFYQQAKKHFDDDENFANKAREYVVRLQGGDAQMLKLWEQFKTISLHHSSEIYQQL 248

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLE---------------------KKGNLS--LTKK 711
           NVTL +   RGESFY   +E LV  L+                     K+GN S  + +K
Sbjct: 249 NVTLKDSDVRGESFYNNDLEPLVNELQTQGLAVESDGAQVVFLQELADKEGNPSPVIIQK 308

Query: 712 LG------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
            G                        I+Y  D  Q +H + +   ++KA  ++ +   ++
Sbjct: 309 QGGGFLYATTDLAALRYRVNTLKAKRIMYFIDARQSLHMQQVFTLSRKAKFVD-DSVSLE 367

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
            + FG ++G D K FKTR+G TVKL+ELL E + R+   + +K   T+L+  E++E  + 
Sbjct: 368 HLAFGTMMGSDGKPFKTRTGGTVKLAELLTEAVERATALVSEKT--TDLSADEVAEIGRK 425

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           V  G +KYADL   R  DYVFS++ ML   GNTA YL YAYTR+ SI R AG++ E
Sbjct: 426 VGIGSVKYADLCKTRTNDYVFSWESMLSFEGNTAPYLQYAYTRVQSIFRKAGVSPE 481



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T+L+  E++E  + V  G +KYADL   R  DYVFS++ ML   GNTA YL YAYTR+
Sbjct: 410  KTTDLSADEVAEIGRKVGIGSVKYADLCKTRTNDYVFSWESMLSFEGNTAPYLQYAYTRV 469

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI R AG++ E L+ A     + +  E+E  LA  LL+ ++VL  V R+   H LC YL
Sbjct: 470  QSIFRKAGVSPESLQAA-----LIIGTEQEKTLAIKLLQFSEVLDQVAREAMPHLLCTYL 524

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YDI++ +  FY+ C  ++   +G    +   RL L    AK + +  D+L I  + +M
Sbjct: 525  YDIASLYMSFYEACPILK---DGIAPELRDSRLRLCHLVAKTIAQGLDLLGIEVMERM 579



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGD+Q N AM   K         NP ++A  I + +         L  + +K+E A PGF
Sbjct: 36  FGDYQANCAMGAAKAMG-----TNPRELAAKIVAAL--------ELDGIAEKLEIAGPGF 82

Query: 108 VNVFLSRVYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARK 152
           +N+ L+  + GEQ+     +  +Q   +     +++D+S PN+A++
Sbjct: 83  INIDLNPQWLGEQIAKAQSDARLQVEQVADAQNIVIDYSGPNLAKE 128


>gi|444427750|ref|ZP_21223120.1| arginyl-tRNA ligase [Vibrio campbellii CAIM 519 = NBRC 15631]
 gi|444238997|gb|ELU50578.1| arginyl-tRNA ligase [Vibrio campbellii CAIM 519 = NBRC 15631]
          Length = 577

 Score =  245 bits (626), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 175/532 (32%), Positives = 268/532 (50%), Gaps = 59/532 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  ++D  + A++      G    S A+  +    +FGD+Q N  M + K       
Sbjct: 1   MNIQALINDKVSQALEAT----GAPAGSPAAVRQSAKPQFGDYQANGVMGVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ +  V+         L  +  K E+A PGF+N+FLS  +  +Q +  + + 
Sbjct: 53  -TNPREFAQKVLDVL--------DLDGIASKTEIAGPGFINIFLSEEFLAKQAEAALADS 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                 ++   ++ D+S+PN+AKEMHVGHLRSTIIGD + R LE+LGH V+R NH+GDWG
Sbjct: 104 RLGVAADEAQTIVADYSAPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHKVIRANHIGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+    +    S  +ADL+ FY+ESKK +DEDE F  +A   VV LQ  D 
Sbjct: 164 TQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLYDEDEEFAVKARNYVVKLQSGDE 223

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDD 501
              + W+ + DV+    Q+ YDRLNV+L+     GES Y   + ++V  L+ +GL   DD
Sbjct: 224 FCAEMWKKLVDVTMIQNQRNYDRLNVSLSRDDVMGESMYNDMLPKIVADLKAQGLAVEDD 283

Query: 502 GRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G ++++ E     D  ++ + + K DGGF Y T+D+A  + R EE  AD ++Y  D  Q 
Sbjct: 284 GAQVVFLEEFKNKDGEAMGVIVQKRDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQ- 342

Query: 557 VHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 616
            H  L++  TI+     R   Y+   V   +H       FGM++      F      +  
Sbjct: 343 -HQHLMQAWTIV-----RKAGYVPESVSLEHHA------FGMMLGKDGKPFKTRAGGTVR 390

Query: 617 IADL-------QAFYKESKK-RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSR- 667
           +ADL        A   ESK     EDE   K+A    VA+         A     D+S+ 
Sbjct: 391 LADLLDEAEVRAAQLIESKNPELAEDE---KKAIANTVAM---------AAVKYADLSKH 438

Query: 668 RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTD 719
           R    ++D  N+   E   + Y ++    V  +  K  +S+    G + +TD
Sbjct: 439 RTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGISMDDLQGEIKITD 490



 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/357 (38%), Positives = 189/357 (52%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+L+     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLSRDDVMGESMYNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E       
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELAEDEKKAIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AGI+ +D
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGISMDD 481



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E       VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAEDEKKAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AGI+ +DL+       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGISMDDLQ-----GEIKITDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 19/156 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  ++D  + A++      G    S A+  +    +FGD+Q N  M + K       
Sbjct: 1   MNIQALINDKVSQALEAT----GAPAGSPAAVRQSAKPQFGDYQANGVMGVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ +  V+         L  +  K E A PGF+N+FLS  +  +Q +  + + 
Sbjct: 53  -TNPREFAQKVLDVL--------DLDGIASKTEIAGPGFINIFLSEEFLAKQAEAALADS 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                 ++   ++ D+S+PN+A++      HL S I
Sbjct: 104 RLGVAADEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|34497417|ref|NP_901632.1| arginyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|39932057|sp|Q7NWM1.1|SYR_CHRVO RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|34103272|gb|AAQ59634.1| arginyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 572

 Score =  245 bits (626), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 156/407 (38%), Positives = 224/407 (55%), Gaps = 60/407 (14%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K  K      NP  +A+ + + +         LA + DK+E+A PG
Sbjct: 34  EFGDYQANGVMGAAKALK-----TNPRALAEKVVAAL--------DLAGIADKVEIAGPG 80

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L+  Y   + +  + +   G+ P    K LRV+V++SSPN+AKEMHVGHLRS+II
Sbjct: 81  FINIHLAPEYLARRSEAALKDDKLGIAPV---KPLRVMVEYSSPNLAKEMHVGHLRSSII 137

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ-----AF 414
           GD ++R++EY+GHDVVR NHVGDWGTQFGML+A+L +      T+    ADLQ      F
Sbjct: 138 GDALARVMEYVGHDVVRANHVGDWGTQFGMLVAYLVE------TRHAGDADLQLSDLETF 191

Query: 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 474
           Y+ +K RFDE E F   A   VV LQ  D +  K W    DVS +  + +Y++LNV L  
Sbjct: 192 YRNAKIRFDESEDFANTARDYVVKLQGGDEEVLKLWRQFVDVSLKHCEDVYEKLNVGLKR 251

Query: 475 ---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW------GEDRGSIPMTIV--KSDG 523
              RGES Y   +  +V  L +KGLL  DDG ++++       ED+   PM ++  K DG
Sbjct: 252 EHVRGESSYNDDLPVIVQELREKGLLTEDDGAQVVFLDEFRTQEDK---PMGVIVQKKDG 308

Query: 524 GFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDV 583
           GF Y T+D+ A+R R  E K D ++YV D  Q  HF  +        TI R   +   + 
Sbjct: 309 GFIYTTTDIGAVRYRHRELKLDRVIYVVDARQSQHFAQMF-------TICRKAGF-APEA 360

Query: 584 VRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           ++L HVG     FG+++    D    + T+S     L     E+++R
Sbjct: 361 MKLEHVG-----FGVMMG---DDGKPFKTRSGGTVKLIELLNEAEER 399



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/349 (40%), Positives = 186/349 (53%), Gaps = 64/349 (18%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ--- 621
           S+IIGD ++R++EY+GHDVVR NHVGDWGTQFGML+A+L +      T+    ADLQ   
Sbjct: 134 SSIIGDALARVMEYVGHDVVRANHVGDWGTQFGMLVAYLVE------TRHAGDADLQLSD 187

Query: 622 --AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV 679
              FY+ +K RFDE E F   A   VV LQ  D +  K W    DVS +  + +Y++LNV
Sbjct: 188 LETFYRNAKIRFDESEDFANTARDYVVKLQGGDEEVLKLWRQFVDVSLKHCEDVYEKLNV 247

Query: 680 TLTE---RGESFYQKHMEQLVPYLEKKGNLS------------------------LTKKL 712
            L     RGES Y   +  +V  L +KG L+                        + KK 
Sbjct: 248 GLKREHVRGESSYNDDLPVIVQELREKGLLTEDDGAQVVFLDEFRTQEDKPMGVIVQKKD 307

Query: 713 G-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFV 749
           G                       ++YV D  Q  HF  +    +KAG   P   +++ V
Sbjct: 308 GGFIYTTTDIGAVRYRHRELKLDRVIYVVDARQSQHFAQMFTICRKAG-FAPEAMKLEHV 366

Query: 750 GFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVA 809
           GFGV++G+D K FKTRSG TVKL ELL+E   R+   + +KN   +L+  +  E   AV 
Sbjct: 367 GFGVMMGDDGKPFKTRSGGTVKLIELLNEAEERAYALVSEKN--PDLSDAQKREIANAVG 424

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
            G +KYADLS NR  DY+F++D ML   GNTA YL YAYTR+ S+ R A
Sbjct: 425 IGAVKYADLSKNRMSDYIFNWDTMLAFEGNTAPYLQYAYTRVQSVFRKA 473



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 94/178 (52%), Gaps = 12/178 (6%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ +L+  +  E   AV  G +KYADLS NR  DY+F++D ML   GNTA YL YAYTR+
Sbjct: 407  KNPDLSDAQKREIANAVGIGAVKYADLSKNRMSDYIFNWDTMLAFEGNTAPYLQYAYTRV 466

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R A    ED    A+   + +    E  LA  L +  D L  V      H+L  YL
Sbjct: 467  QSVFRKA----EDYDANAR---IVITEPAEKQLAAALAQFEDTLNSVVEGCYPHYLSLYL 519

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y I+T FS FY+ C  ++ + E     V   RL LA  TAK ++   D+L I+ +  M
Sbjct: 520  YQIATLFSRFYEACPILKSEGE-----VRASRLQLAALTAKTLRTGLDLLGIKVLESM 572



 Score = 59.7 bits (143), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 21/121 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K  K      NP  +A+ + + +         LA + DK+E A PG
Sbjct: 34  EFGDYQANGVMGAAKALK-----TNPRALAEKVVAAL--------DLAGIADKVEIAGPG 80

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           F+N+ L+  Y   + +  + +   G+ P    K LRV+V++SSPN+A++      HL S 
Sbjct: 81  FINIHLAPEYLARRSEAALKDDKLGIAPV---KPLRVMVEYSSPNLAKE--MHVGHLRSS 135

Query: 164 I 164
           I
Sbjct: 136 I 136


>gi|114564914|ref|YP_752428.1| arginyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122298448|sp|Q07WM5.1|SYR_SHEFN RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|114336207|gb|ABI73589.1| arginyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 581

 Score =  245 bits (626), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/328 (42%), Positives = 196/328 (59%), Gaps = 28/328 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K+      KKNP ++AQ I       + T P+ +  + K+E+A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AKKNPRELAQLI-------IDTLPA-SSYVAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F+       Q++  + +   GV  PT   K  ++VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFIDDNALANQLQQALTSDHLGVALPT---KQTIVVDYSSPNLAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKK 420
           ++ R LEYLGH+V+R NHVGDWGTQFGML+A +++ +  +       ++DL++FY+ +K 
Sbjct: 145 SVVRALEYLGHNVIRQNHVGDWGTQFGMLLALMEELRAANGEQAKMELSDLESFYRAAKV 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE   F  RA Q VVALQ  D    K W    D+S      +Y RL V+LT     GE
Sbjct: 205 RFDESTEFATRARQLVVALQSGDEYCNKLWREFNDISLSHCHDVYKRLGVSLTRADVHGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           S Y   + Q+V  L+ +GLL   +G K+++ E     +   +P+ I K+DGG+ Y TSDL
Sbjct: 265 SAYNADLAQVVKDLDAQGLLSESNGAKVVFQEAFRNKEGEPLPVIIQKADGGYLYATSDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           AA+R R    KAD  +Y  DL Q +HF+
Sbjct: 325 AAMRYRSNVLKADRAMYFVDLRQALHFQ 352



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 184/345 (53%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LEYLGH+V+R NHVGDWGTQFGML+A +++ +  +       ++DL++F
Sbjct: 139 STIIGDSVVRALEYLGHNVIRQNHVGDWGTQFGMLLALMEELRAANGEQAKMELSDLESF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA Q VVALQ  D    K W    D+S      +Y RL V+LT 
Sbjct: 199 YRAAKVRFDESTEFATRARQLVVALQSGDEYCNKLWREFNDISLSHCHDVYKRLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV------------------------- 715
               GES Y   + Q+V  L+ +G LS +    +V                         
Sbjct: 259 ADVHGESAYNADLAQVVKDLDAQGLLSESNGAKVVFQEAFRNKEGEPLPVIIQKADGGYL 318

Query: 716 ----------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                 Y  DL Q +HF+ +   AK A  + P  + ++  GFG 
Sbjct: 319 YATSDLAAMRYRSNVLKADRAMYFVDLRQALHFQQVFSLAKLAKFVRPEMS-LEHTGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTRSG  VKL +LLDE   R+L+ ++ KN   ++    L+E  + V    +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLVDLLDEADVRALELVRSKN--PDMDEATLTEIARVVGISSV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 109/188 (57%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++    L+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEATLTEIARVVGISSVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I + A     DL  A     + LEHEKE  L   L +  +VL  +T  
Sbjct: 464  PYLLYAYTRVAGIFKRA--TDIDLSQA----KIVLEHEKEKDLGTKLAQFGEVLTRMTDK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YLY++++ FS FY+ C  +  + E + ++    RLLLA+ TAK +K    +L
Sbjct: 518  GLPHVLCGYLYELASEFSSFYEACPVLAAETEAQKQS----RLLLAQLTAKTLKTGLSLL 573

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 574  GIETLERM 581



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 19/107 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K+      KKNP ++AQ I       + T P+ +  + K+E A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AKKNPRELAQLI-------IDTLPA-SSYVAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F+       Q++  + +   GV  PT   K  ++VD+SSPN+A++
Sbjct: 88  NFFIDDNALANQLQQALTSDHLGVALPT---KQTIVVDYSSPNLAKE 131


>gi|163802523|ref|ZP_02196415.1| arginyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159173606|gb|EDP58425.1| arginyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 577

 Score =  245 bits (625), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 213/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +     T +K   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEAFLAKQAEAALADSRLGVTADKAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+L+     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLSRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   DDG ++++ E     D  ++ + + K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEEMGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPETVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 133/350 (38%), Positives = 185/350 (52%), Gaps = 53/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+L+  
Sbjct: 195 RESKKLYDEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLSRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + ++V  L+ +G                         + + K+ G    
Sbjct: 255 DVMGESMYNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYEEMGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PETVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E       VA   +K
Sbjct: 374 LGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELAAEEKQAIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++ +D
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVSMDD 481



 Score =  120 bits (301), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E       VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAAEEKQAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++ +DLR       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVSMDDLR-----GEIKVTDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----SVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +     T +K   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEAFLAKQAEAALADSRLGVTADKAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|410635616|ref|ZP_11346224.1| arginyl-tRNA synthetase [Glaciecola lipolytica E3]
 gi|410144699|dbj|GAC13429.1| arginyl-tRNA synthetase [Glaciecola lipolytica E3]
          Length = 578

 Score =  245 bits (625), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 145/368 (39%), Positives = 209/368 (56%), Gaps = 27/368 (7%)

Query: 205 MSVRDYLSDVFTHA-VQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++   L D F  A + +  PE  +  A +A +      +FG++Q N AMAL KI K K 
Sbjct: 1   MNLHTVLLDRFKAALINIGAPE--NSPAPLAKSTRA---EFGEYQFNGAMALAKILKQK- 54

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
               P DIA+ I + V         L  + +K+EVA PGF+N+ L   + GEQ+ +   +
Sbjct: 55  ----PRDIAEKIVAAV--------ELDDIAEKLEVAGPGFINIHLKSQWLGEQLLEAYND 102

Query: 324 GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
                   +   ++VD+SSPN+AKEMHVGHLRSTIIGD + + LE++GH+V+R NH+GDW
Sbjct: 103 ERLGVEKQQSQTIVVDYSSPNLAKEMHVGHLRSTIIGDAVVKALEFMGHNVIRQNHMGDW 162

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGML+AHL DK          ++DL+ FY+E+K RFDE++ F  RA Q VV LQ  D
Sbjct: 163 GTQFGMLLAHLSDKIASNQVAETALSDLEDFYREAKVRFDEEDGFADRARQYVVKLQGGD 222

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELD 500
                 W+   D+S +  +++Y +LNV+LT +   GES Y   +   V  L +KG+   D
Sbjct: 223 AHCLSLWQDFIDISIKHSEEVYKKLNVSLTRKDIMGESAYNDDLLPTVNELVQKGIAVED 282

Query: 501 DGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
            G  +++      +D       I KS GG+ Y T+D AAIR R ++  AD  +  TD  Q
Sbjct: 283 QGALVVFIQELANKDGEPAVYIIQKSGGGYLYSTTDQAAIRYRCQKLGADRTLIFTDARQ 342

Query: 556 GVHFRLLE 563
            +HF+  E
Sbjct: 343 ALHFKQTE 350



 Score =  226 bits (577), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 206/381 (54%), Gaps = 57/381 (14%)

Query: 536 RQRIEEEKADWIV--YVT-DLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           R  +E++++  IV  Y + +L + +H   L  STIIGD + + LE++GH+V+R NH+GDW
Sbjct: 104 RLGVEKQQSQTIVVDYSSPNLAKEMHVGHLR-STIIGDAVVKALEFMGHNVIRQNHMGDW 162

Query: 593 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 652
           GTQFGML+AHL DK          ++DL+ FY+E+K RFDE++ F  RA Q VV LQ  D
Sbjct: 163 GTQFGMLLAHLSDKIASNQVAETALSDLEDFYREAKVRFDEEDGFADRARQYVVKLQGGD 222

Query: 653 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFY-------------------- 689
                 W+   D+S +  +++Y +LNV+LT +   GES Y                    
Sbjct: 223 AHCLSLWQDFIDISIKHSEEVYKKLNVSLTRKDIMGESAYNDDLLPTVNELVQKGIAVED 282

Query: 690 ------------QKHMEQLVPYLEKKGN---LSLTKKLGIVY------------VTDLGQ 722
                        K  E  V  ++K G     S T +  I Y             TD  Q
Sbjct: 283 QGALVVFIQELANKDGEPAVYIIQKSGGGYLYSTTDQAAIRYRCQKLGADRTLIFTDARQ 342

Query: 723 GVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRR 782
            +HF+  E  A+KAG ++  ++  +   FG++LG+D K FKTRSG TVKL++LLDE + R
Sbjct: 343 ALHFKQTEIVARKAGFISEQQS-YEHCPFGMMLGQDGKPFKTRSGSTVKLADLLDEAVER 401

Query: 783 SLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAV 842
           +   + D  R ++ +  E  +  + +    +KYADLS NR  DY+F++D ML   GNTA 
Sbjct: 402 AEKLMAD--RKSDFSEAERQQVAEKIGISAVKYADLSKNRTTDYIFNWDSMLSFEGNTAP 459

Query: 843 YLLYAYTRIASIARTAGINSE 863
           Y+ YAYTR   I + AG NS+
Sbjct: 460 YIQYAYTRANKIFKDAGANSD 480



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 97/179 (54%), Gaps = 8/179 (4%)

Query: 941  NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
            +R ++ +  E  +  + +    +KYADLS NR  DY+F++D ML   GNTA Y+ YAYTR
Sbjct: 408  DRKSDFSEAERQQVAEKIGISAVKYADLSKNRTTDYIFNWDSMLSFEGNTAPYIQYAYTR 467

Query: 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
               I + AG NS+       +  + L+  +E  LA  LL+  + L L+T +   H LC Y
Sbjct: 468  ANKIFKDAGANSDSF-----TASIELQSPQERVLAVKLLQYVEALNLLTAEATPHVLCSY 522

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            LY+++++F  FY+ C   +     + K     R+ L   TAK +K   ++L I T+ KM
Sbjct: 523  LYELASSFMSFYEACPIFKAGVSNEQK---NSRITLTGLTAKTIKSGLELLGISTLEKM 578



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 21/166 (12%)

Query: 9   MSVRDYLSDVFTHA-VQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++   L D F  A + +  PE  +  A +A +      +FG++Q N AMAL KI K K 
Sbjct: 1   MNLHTVLLDRFKAALINIGAPE--NSPAPLAKSTRA---EFGEYQFNGAMALAKILKQK- 54

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
               P DIA+ I + V         L  + +K+E A PGF+N+ L   + GEQ+ +   +
Sbjct: 55  ----PRDIAEKIVAAV--------ELDDIAEKLEVAGPGFINIHLKSQWLGEQLLEAYND 102

Query: 128 GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAI 173
                   +   ++VD+SSPN+A++      HL S I    + KA+
Sbjct: 103 ERLGVEKQQSQTIVVDYSSPNLAKE--MHVGHLRSTIIGDAVVKAL 146


>gi|421263284|ref|ZP_15714341.1| arginyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. P52VAC]
 gi|401689794|gb|EJS85171.1| arginyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. P52VAC]
          Length = 577

 Score =  245 bits (625), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 154/422 (36%), Positives = 234/422 (55%), Gaps = 43/422 (10%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  + +H +Q A    G  T S A   +    +FGD+Q N  MA  K        +NP +
Sbjct: 3   IQSILSHKIQQAMIASGADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPRE 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN----GVQ 326
            AQ +   +         L+++ +KIE+A PGF+N+FL + +  EQI  + VN    G+Q
Sbjct: 58  FAQQVIEQL--------DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQ 108

Query: 327 PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 386
                    V+ D+SSPN+AKEMHVGHLRSTIIGD + R LE+LG+ V+R NHVGDWGTQ
Sbjct: 109 ATETQT---VVADYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNKVIRANHVGDWGTQ 165

Query: 387 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDY 446
           FGMLIA+L+ K  +       ++DL+AFY+ +K+ +D D +F ++A   VV LQ  D   
Sbjct: 166 FGMLIAYLE-KVENESASEMELSDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYC 224

Query: 447 KKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDDGR 503
           +  W+ + D++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+++GL   D+G 
Sbjct: 225 RIMWKKLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGA 284

Query: 504 KIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
            +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD  +  +D  Q  H
Sbjct: 285 FVVYLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQH 344

Query: 559 FRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 618
              ++++ +    I+R   Y+  D  +L H       FGM++      F      +  +A
Sbjct: 345 ---MQQAWL----ITRKAGYV-PDSFQLEH-----KNFGMMLGKDGKPFKTRTGGTVKLA 391

Query: 619 DL 620
           DL
Sbjct: 392 DL 393



 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 137/360 (38%), Positives = 196/360 (54%), Gaps = 58/360 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KVENESASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D D +F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 187 SDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYCRIMWKKLVDITMQQNQHNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+++                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGAFVVYLDEFKNKEGEPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+  +++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   +++K+  T L+  E +   +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAVERATQLIQEKS--TALSAQEKAAVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           VA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + +N +D  E
Sbjct: 424 VAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSELNEQDLSE 483



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 106/180 (58%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + T L+  E +   +AVA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  QEKSTALSAQEKAAVIEAVAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   + +N +DL      +PV L +EKE  LA  LL+  + + +V ++   H LC 
Sbjct: 466  RIRSIFNRSELNEQDL----SESPVVLSNEKERLLAIKLLQFEEAIQIVAKEGIPHVLCT 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY+++  FS FY++C  +  + E     +   RL LA  T K +K+  D+L I+TV KM
Sbjct: 522  YLYELAGVFSSFYEHCPILNNEDE----QIKRSRLKLALLTEKTLKQGLDLLGIKTVDKM 577



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 23/154 (14%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  + +H +Q A    G  T S A   +    +FGD+Q N  MA  K        +NP +
Sbjct: 3   IQSILSHKIQQAMIASGADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPRE 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN----GVQ 130
            AQ +   +         L+++ +KIE A PGF+N+FL + +  EQ+  + VN    G+Q
Sbjct: 58  FAQQVIEQL--------DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQ 108

Query: 131 PPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                    V+ D+SSPN+A++      HL S I
Sbjct: 109 ATETQT---VVADYSSPNVAKE--MHVGHLRSTI 137


>gi|374704786|ref|ZP_09711656.1| arginyl-tRNA synthetase [Pseudomonas sp. S9]
          Length = 579

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 228/409 (55%), Gaps = 54/409 (13%)

Query: 211 LSDVFTHAVQVAF---------PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           + D   H +Q A          PE    T  V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQALTVLTADGVLPEGLTPTIQVENTKDK---SNGDFASNIAMMLAKPAGM 57

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
           K     P D+A+ + +     L  +P     I+K+E+A PGF+N + +     ++++  +
Sbjct: 58  K-----PRDLAEKLVAA----LPADPQ----INKVEIAGPGFLNFYQNSAALAQRLEAAL 104

Query: 322 VNGVQPPTLNKK-----LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 376
            +    P LN +      RV++D SSPN+AKEMHVGHLRSTIIGD ++R+LE+LG +V+R
Sbjct: 105 AD----PQLNVRKAGAAQRVVIDLSSPNLAKEMHVGHLRSTIIGDAVARVLEFLGDEVIR 160

Query: 377 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 436
            NHVGDWGTQFGML+A++++  P+       ++DL+ FY+ +KKRFDE E F  RA + V
Sbjct: 161 QNHVGDWGTQFGMLLAYMEEN-PE--AAKSELSDLEVFYRAAKKRFDESEDFANRARELV 217

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEK 493
           V LQ  +P+  + W    ++S    QK YDRLNV LT    RGES Y   +  +V  L+ 
Sbjct: 218 VQLQAGEPECMRLWHRFNEISLSHCQKAYDRLNVKLTPADVRGESAYNDDLANIVADLQS 277

Query: 494 KGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIV 548
           KGLL   +G K ++       +   +P+ + K+ GG+ Y T+DLAA+R R +  KAD  +
Sbjct: 278 KGLLSESEGAKCVFLDEFKNAEGNPLPVIVQKAGGGYLYSTTDLAAMRYRSQTLKADRAL 337

Query: 549 YVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
           Y  D  Q +HF++  E       ++R  E++    ++L H+G +GT  G
Sbjct: 338 YFVDQRQALHFQMAFE-------VARRAEFVAPH-MQLEHMG-FGTMNG 377



 Score =  233 bits (594), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 150/401 (37%), Positives = 210/401 (52%), Gaps = 72/401 (17%)

Query: 524 GFTYDTSDLAAIRQRIEEEKADWIVYV---------------TDLGQGVHFRLLEESTII 568
           GF     + AA+ QR+E   AD  + V                +L + +H   L  STII
Sbjct: 85  GFLNFYQNSAALAQRLEAALADPQLNVRKAGAAQRVVIDLSSPNLAKEMHVGHLR-STII 143

Query: 569 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 628
           GD ++R+LE+LG +V+R NHVGDWGTQFGML+A++++  P+       ++DL+ FY+ +K
Sbjct: 144 GDAVARVLEFLGDEVIRQNHVGDWGTQFGMLLAYMEEN-PE--AAKSELSDLEVFYRAAK 200

Query: 629 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 685
           KRFDE E F  RA + VV LQ  +P+  + W    ++S    QK YDRLNV LT    RG
Sbjct: 201 KRFDESEDFANRARELVVQLQAGEPECMRLWHRFNEISLSHCQKAYDRLNVKLTPADVRG 260

Query: 686 ESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG--------- 713
           ES Y   +  +V  L+ KG LS                       + +K G         
Sbjct: 261 ESAYNDDLANIVADLQSKGLLSESEGAKCVFLDEFKNAEGNPLPVIVQKAGGGYLYSTTD 320

Query: 714 ---------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGED 758
                           +Y  D  Q +HF++  E A++A  + P+  +++ +GFG + G D
Sbjct: 321 LAAMRYRSQTLKADRALYFVDQRQALHFQMAFEVARRAEFVAPH-MQLEHMGFGTMNGAD 379

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADL 818
            + FKTR G TVKL +LLDE   R+   +K KN   ++   EL     AV  G +KYADL
Sbjct: 380 GRPFKTRDGGTVKLIDLLDEAEERAYQLVKAKN--PDIAEDELRTIAHAVGIGAVKYADL 437

Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           S +R  DY F+F+ ML   GNTA YLLYAYTR+AS+ R  G
Sbjct: 438 SKHRTSDYSFNFELMLSFEGNTAPYLLYAYTRVASVLRKLG 478



 Score =  107 bits (267), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ ++   EL     AV  G +KYADLS +R  DY F+F+ ML   GNTA YLLYAYT
Sbjct: 409  KAKNPDIAEDELRTIAHAVGIGAVKYADLSKHRTSDYSFNFELMLSFEGNTAPYLLYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+ R  G + +++     + P+ L+  +E  LA  L +  +VL  V      H LC 
Sbjct: 469  RVASVLRKLGKSFDEI-----NGPLDLQAPQEIDLAGKLAQFGEVLNSVADKGTPHILCS 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY++C  I  ++          RL LA  + + +K+   +L + T+ +M
Sbjct: 524  YLYDVAGLFSSFYEHCPIITAES----PETQQSRLRLAALSGRTLKQGLQLLGLETLERM 579



 Score = 47.4 bits (111), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 34/152 (22%)

Query: 15  LSDVFTHAVQVAF---------PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           + D   H +Q A          PE    T  V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQALTVLTADGVLPEGLTPTIQVENTKDK---SNGDFASNIAMMLAKPAGM 57

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           K     P D+A+ + +     L  +P     I+K+E A PGF+N + +     ++++  +
Sbjct: 58  K-----PRDLAEKLVAA----LPADPQ----INKVEIAGPGFLNFYQNSAALAQRLEAAL 104

Query: 126 VNGVQPPTLNKK-----LRVLVDFSSPNIARK 152
            +    P LN +      RV++D SSPN+A++
Sbjct: 105 AD----PQLNVRKAGAAQRVVIDLSSPNLAKE 132


>gi|417839054|ref|ZP_12485262.1| putative arginyl-tRNA synthetase, class Ic [Haemophilus
           haemolyticus M19107]
 gi|341955256|gb|EGT81716.1| putative arginyl-tRNA synthetase, class Ic [Haemophilus
           haemolyticus M19107]
          Length = 353

 Score =  244 bits (624), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 140/349 (40%), Positives = 204/349 (58%), Gaps = 26/349 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ +          N  L+ + +K+E+A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEVSTALSQK 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                   K  V++D+SSPN+AKEMHVGHLRSTIIGD + R LE+LGH+V+R NHVGDWG
Sbjct: 104 NLGIQATDKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHNVIRANHVGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+ K  +       + DL+AFY+E+KK +DEDEIF ++A   VV LQ  D 
Sbjct: 164 TQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQGGDE 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDD 501
             +  W+ + +++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL   DD
Sbjct: 223 YCRAMWKRLVNITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPSIVKDLKKQGLAVEDD 282

Query: 502 GRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKAD 545
           G  +++ +   ++   PM ++  K DGGF Y T+D+AA + R E  KAD
Sbjct: 283 GALVVYLDEFKNKEGDPMGVIIQKKDGGFLYTTTDIAAAKYRYETLKAD 331



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 97/143 (67%), Gaps = 4/143 (2%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       + DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +DEDEIF ++A   VV LQ  D   +  W+ + +++ +  Q  YDRLNVTLTE+
Sbjct: 194 REAKKHYDEDEIFAEKARNYVVKLQGGDEYCRAMWKRLVNITMQQNQHNYDRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG 704
              GES Y   +  +V  L+K+G
Sbjct: 254 DVMGESLYNPMLPSIVKDLKKQG 276



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 17/144 (11%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A    G   +  A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQSILSDKIKQAMILA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ +          N  L+ + +K+E A PGF+N+FL+  +   ++   +   
Sbjct: 53  -LNPREFAQKVLD--------NAQLSDIAEKLEIAGPGFINIFLNPTWLTTEVSTALSQK 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
                   K  V++D+SSPN+A++
Sbjct: 104 NLGIQATDKQTVVIDYSSPNVAKE 127


>gi|221061383|ref|XP_002262261.1| arginyl-trna synthetase [Plasmodium knowlesi strain H]
 gi|193811411|emb|CAQ42139.1| arginyl-trna synthetase, putative [Plasmodium knowlesi strain H]
          Length = 588

 Score =  244 bits (624), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/490 (31%), Positives = 257/490 (52%), Gaps = 66/490 (13%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           + +VF H++Q  FP + ++     +       KFG FQCN+A     IFK  G++ N  +
Sbjct: 8   IKEVFQHSIQKCFPSISEEVVVTYAN-----AKFGHFQCNNAF---NIFKKYGKELNV-E 58

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTL 330
            AQ ++ ++   ++ N       ++I+ +  GF+ V LS+ Y  + +  +  N     ++
Sbjct: 59  NAQKLSQLIIENISEN-----FFEEIKSSPQGFITVKLSKQYIEKSLLKLYKNNKIEISV 113

Query: 331 N----------KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
           N             RVLVDFSSPNIAKEMHVGHLRSTI+GD+I  + E+L    +R+NH+
Sbjct: 114 NIDEVKSGNDGDYKRVLVDFSSPNIAKEMHVGHLRSTILGDSICNIFEFLNVQTIRVNHI 173

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGM+I ++   +P++    P + +L + Y+E+KK +D D+ F+K +    + LQ
Sbjct: 174 GDWGTQFGMIINYIVTNYPNFKENMPELTNLTSLYQEAKKIYDVDKEFEKNSKNYAIKLQ 233

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
             D D    W+ IC+ S+++F KIY  L++ L   GES Y   +   +  L+ + LL  +
Sbjct: 234 NNDEDSLFIWKKICESSKKEFNKIYKILDIKLDYVGESHYINMIPSTLKILKDQELLT-N 292

Query: 501 DGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
            G  I +  +   +P+ + KS+GG+ YD++D+AA+  R++E  AD ++YVTD GQ  HF 
Sbjct: 293 VGDAICYHSENFKVPLFLQKSNGGYGYDSTDVAALHYRLKELNADCVIYVTDNGQLSHFE 352

Query: 561 LLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
            + E       ++R  ++  ++  +L HVG     FG+++     KF    T+S     L
Sbjct: 353 TIFE-------VARRAQW-ANEKTKLIHVG-----FGLVLNADNKKFK---TRSGTTIKL 396

Query: 621 QAFYKESKKR-------------------FDEDEIFKKRAYQCVVALQRFD------PDY 655
                E  +R                   F+  +I K     CV A++ FD       DY
Sbjct: 397 INLINEGTERAKKDLLERIQLKSEEEISYFEGVDIDKLSEELCVSAIKYFDIKQNRNTDY 456

Query: 656 KKAWEMICDV 665
           K +++ + +V
Sbjct: 457 KFSYDNMLNV 466



 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 185/344 (53%), Gaps = 48/344 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STI+GD+I  + E+L    +R+NH+GDWGTQFGM+I ++   +P++    P + +L + Y
Sbjct: 149 STILGDSICNIFEFLNVQTIRVNHIGDWGTQFGMIINYIVTNYPNFKENMPELTNLTSLY 208

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +D D+ F+K +    + LQ  D D    W+ IC+ S+++F KIY  L++ L   
Sbjct: 209 QEAKKIYDVDKEFEKNSKNYAIKLQNNDEDSLFIWKKICESSKKEFNKIYKILDIKLDYV 268

Query: 685 GESFYQK------------------------HMEQL-VPYLEKKGN----------LSLT 709
           GES Y                          H E   VP   +K N           +L 
Sbjct: 269 GESHYINMIPSTLKILKDQELLTNVGDAICYHSENFKVPLFLQKSNGGYGYDSTDVAALH 328

Query: 710 KKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
            +L       ++YVTD GQ  HF  + E A++A   N  KT++  VGFG+VL  D KKFK
Sbjct: 329 YRLKELNADCVIYVTDNGQLSHFETIFEVARRAQWANE-KTKLIHVGFGLVLNADNKKFK 387

Query: 764 TRSGDTVKLSELLDEGLRRSLD------KLKDKNRHTELTPTELSEAQQAVAYGCIKYAD 817
           TRSG T+KL  L++EG  R+        +LK +   +     ++ +  + +    IKY D
Sbjct: 388 TRSGTTIKLINLINEGTERAKKDLLERIQLKSEEEISYFEGVDIDKLSEELCVSAIKYFD 447

Query: 818 LSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           +  NRN DY FS+D ML+ +GNT +Y++YAY+R+ SI R   I+
Sbjct: 448 IKQNRNTDYKFSYDNMLNVKGNTGLYIIYAYSRMCSIFRKCNID 491



 Score =  109 bits (272), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 98/184 (53%), Gaps = 11/184 (5%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +LK +   +     ++ +  + +    IKY D+  NRN DY FS+D ML+ +GNT +Y++
Sbjct: 416  QLKSEEEISYFEGVDIDKLSEELCVSAIKYFDIKQNRNTDYKFSYDNMLNVKGNTGLYII 475

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YAY+R+ SI R   I+ + L        ++L    E  L   +L+  DV   + +++ +H
Sbjct: 476  YAYSRMCSIFRKCNIDMDQL----SKDELNLVSPYEVNLGLHILKFPDVFYFILKNMLIH 531

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1115
             L EY YD++T F+ FY+NC  I  + E         RL+L   +  +++ C  +L ++ 
Sbjct: 532  KLAEYTYDLTTIFTAFYENCKVINSENE-------KSRLILCAISKSLLQICLKLLGLKA 584

Query: 1116 VHKM 1119
            + K+
Sbjct: 585  IEKL 588



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 24/148 (16%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           + +VF H++Q  FP + ++     +       KFG FQCN+A     IFK  G++ N  +
Sbjct: 8   IKEVFQHSIQKCFPSISEEVVVTYAN-----AKFGHFQCNNAF---NIFKKYGKELNV-E 58

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTL 134
            AQ ++ ++   ++ N       ++I+++  GF+ V LS+ Y  + +  +  N     ++
Sbjct: 59  NAQKLSQLIIENISEN-----FFEEIKSSPQGFITVKLSKQYIEKSLLKLYKNNKIEISV 113

Query: 135 N----------KKLRVLVDFSSPNIARK 152
           N             RVLVDFSSPNIA++
Sbjct: 114 NIDEVKSGNDGDYKRVLVDFSSPNIAKE 141


>gi|195137498|ref|XP_002012565.1| GI21379 [Drosophila mojavensis]
 gi|193918548|gb|EDW17415.1| GI21379 [Drosophila mojavensis]
          Length = 212

 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/219 (53%), Positives = 157/219 (71%), Gaps = 11/219 (5%)

Query: 203 DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 262
           + +S+  YL  VFT A+  A+P   +    +A+ N     KFGD+QCN+AM L K  K++
Sbjct: 5   NTLSIMGYLEKVFTKAISNAYPRFSNVPTIIAAVN--VSSKFGDYQCNNAMGLAKKMKEQ 62

Query: 263 GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV 322
           G  K P DIAQ I   V          + +I+K+EV+  GF+N+F+S+  A   + +++ 
Sbjct: 63  GIIKTPRDIAQDIQKCVPE--------SPIIEKVEVSSAGFINIFISKKLAVLSLTNMLR 114

Query: 323 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
            G+QPP ++KK RVLVDFSSPNIAK+MHVGHLRSTIIG++I RLLE+L HDV+R+NH+GD
Sbjct: 115 YGIQPPKVSKK-RVLVDFSSPNIAKQMHVGHLRSTIIGESICRLLEFLQHDVIRINHLGD 173

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
           WGTQFGMLIAHL+D+FP++  +SPPI DLQ FYKESKKR
Sbjct: 174 WGTQFGMLIAHLEDRFPNFQNESPPIGDLQEFYKESKKR 212



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 60/66 (90%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG++I RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP++  +SPPI DLQ FY
Sbjct: 147 STIIGESICRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNFQNESPPIGDLQEFY 206

Query: 625 KESKKR 630
           KESKKR
Sbjct: 207 KESKKR 212



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 11/146 (7%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           + +S+  YL  VFT A+  A+P   +    +A+ N     KFGD+QCN+AM L K  K++
Sbjct: 5   NTLSIMGYLEKVFTKAISNAYPRFSNVPTIIAAVN--VSSKFGDYQCNNAMGLAKKMKEQ 62

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
           G  K P DIAQ I   V          + +I+K+E +  GF+N+F+S+  A   + +++ 
Sbjct: 63  GIIKTPRDIAQDIQKCVPE--------SPIIEKVEVSSAGFINIFISKKLAVLSLTNMLR 114

Query: 127 NGVQPPTLNKKLRVLVDFSSPNIARK 152
            G+QPP ++KK RVLVDFSSPNIA++
Sbjct: 115 YGIQPPKVSKK-RVLVDFSSPNIAKQ 139


>gi|223042112|ref|ZP_03612285.1| arginyl-tRNA synthetase [Actinobacillus minor 202]
 gi|223017100|gb|EEF15539.1| arginyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 575

 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/329 (41%), Positives = 201/329 (61%), Gaps = 28/329 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K         NP + AQ I          N +L  ++DK+E+A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NANLDGIVDKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII--VN-GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL++ +  E     +  VN G+Q  T N +  ++VD+SSPN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLNKAWLAENANQALQAVNFGIQ--TANPQ-TIVVDYSSPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K
Sbjct: 139 GDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMELSDLEAFYRAAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
           + +D DE F ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTLTE+   G
Sbjct: 198 EHYDSDEAFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLTEKDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   + ++V  L+ KGL   D+G  +++ +   ++   PM ++  K DGGF Y T+D
Sbjct: 258 ESLYNPMLPEIVADLKAKGLAVEDEGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +AA + R E  KAD  +  +D  Q  H +
Sbjct: 318 VAAAKYRYETLKADRALVFSDSRQAQHMQ 346



 Score =  227 bits (578), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 141/350 (40%), Positives = 193/350 (55%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+ +D DE F ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTLTE+
Sbjct: 194 RAAKEHYDSDEAFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   + ++V  L+ K                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPEIVADLKAKGLAVEDEGALVVFLDEFKNKDGDPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+   ++   FG++
Sbjct: 314 TTTDVAAAKYRYETLKADRALVFSDSRQAQHMQQAWLITRKAGYV-PDSFSLEHPFFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TVKL +LLDE + R+ DKL    R T+LT  E +   +AVA G +K
Sbjct: 373 LGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLISA-RSTDLTAEEKAAVVEAVAIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           Y+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   AGI++ +
Sbjct: 431 YSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFARAGIDANE 480



 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 106/178 (59%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T+LT  E +   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RSTDLTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   AGI++ +L     +  + L  +KE ALA  LL+  + L  V ++   H LC+YL
Sbjct: 468  RSIFARAGIDANEL-----TGEIHLTEDKERALAVKLLQFEEALNGVAKEGMPHILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY+ C  +  +     + V   RL LA  TAK +K+  D+L I+TV KM
Sbjct: 523  YELAGTFSSFYEACPILNAE-----EAVKNSRLRLAALTAKTLKQGLDLLGIKTVEKM 575



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 21/121 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K         NP + AQ I          N +L  ++DK+E A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NANLDGIVDKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII--VN-GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           F+N+FL++ +  E     +  VN G+Q  T N +  ++VD+SSPN+A++      HL S 
Sbjct: 82  FINIFLNKAWLAENANQALQAVNFGIQ--TANPQ-TIVVDYSSPNVAKE--MHVGHLRST 136

Query: 164 I 164
           I
Sbjct: 137 I 137


>gi|336312988|ref|ZP_08567932.1| arginyl-tRNA synthetase [Shewanella sp. HN-41]
 gi|335863373|gb|EGM68525.1| arginyl-tRNA synthetase [Shewanella sp. HN-41]
          Length = 581

 Score =  244 bits (622), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 151/398 (37%), Positives = 226/398 (56%), Gaps = 44/398 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K        KNP ++AQ I          N   +  + K+E+A PGF+
Sbjct: 41  GDLATNLAMMLTK-----AAGKNPRELAQLIID--------NLPASAYVAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F+       Q++  I +   G++ PT      ++VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFIDDSALANQLQTAIQDEHLGIKLPTPQT---IVVDYSSPNLAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKK 420
           ++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K 
Sbjct: 145 SVVRTLEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRTQNGEQAQLELSDLETFYRAAKL 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y+RL V+LT     GE
Sbjct: 205 RFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTRADVHGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           S Y   +EQ+V  L+ KGLL   +G K+++ E     +  ++P+ I K+DGG+ Y T+DL
Sbjct: 265 SAYNADLEQVVKDLDAKGLLTESNGAKVVFQEAFRNKEGEALPVIIQKADGGYLYATTDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           AA+R R    KAD ++Y  DL Q +HF+ +        ++++L +++  D + L H+G +
Sbjct: 325 AAMRYRSNVLKADRVLYFVDLRQALHFQQVF-------SLAKLAKFV-RDDMSLEHLG-F 375

Query: 593 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           GT  G      +D  P + T++  +  L    +E+  R
Sbjct: 376 GTMNG------EDGRP-FKTRTGGVVKLVDLLEEANHR 406



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/345 (38%), Positives = 187/345 (54%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRTLEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRTQNGEQAQLELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y+RL V+LT 
Sbjct: 199 YRAAKLRFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLS--------------------------------- 707
               GES Y   +EQ+V  L+ KG L+                                 
Sbjct: 259 ADVHGESAYNADLEQVVKDLDAKGLLTESNGAKVVFQEAFRNKEGEALPVIIQKADGGYL 318

Query: 708 --------------LTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                         + K   ++Y  DL Q +HF+ +   AK A  +  + + ++ +GFG 
Sbjct: 319 YATTDLAAMRYRSNVLKADRVLYFVDLRQALHFQQVFSLAKLAKFVRDDMS-LEHLGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTR+G  VKL +LL+E   R+LD ++ KN   ++    L+E  + V    +
Sbjct: 378 MNGEDGRPFKTRTGGVVKLVDLLEEANHRALDLVRSKN--PDMDAATLTEIARVVGISAV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/188 (40%), Positives = 112/188 (59%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+LD ++ KN   ++    L+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALDLVRSKN--PDMDAATLTEIARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I + A     DL   +Q+T V LEHEKE  L   L +  ++L  V   
Sbjct: 464  PYLLYAYTRVAGIFKRA--TDVDL---SQATIV-LEHEKEKDLGNKLAQFGEILNRVVDK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YLY+++ AFS FY+ C  +  D++ +       RLLL++ TA+ ++K  ++L
Sbjct: 518  GQPHVLCGYLYELAGAFSSFYEACPVLAADSDAQ----RDSRLLLSQLTARTLQKGLNLL 573

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 574  GIETLERM 581



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 19/107 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K        KNP ++AQ I          N   +  + K+E A PGF+
Sbjct: 41  GDLATNLAMMLTK-----AAGKNPRELAQLIID--------NLPASAYVAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F+       Q++  I +   G++ PT      ++VD+SSPN+A++
Sbjct: 88  NFFIDDSALANQLQTAIQDEHLGIKLPTPQT---IVVDYSSPNLAKE 131


>gi|407070812|ref|ZP_11101650.1| arginyl-tRNA ligase [Vibrio cyclitrophicus ZF14]
          Length = 577

 Score =  244 bits (622), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 215/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+        +L  +  K+E+A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------NLDGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  +Q    + +      + +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FLNIFLDEAFLAKQADAALADSRLGVAVAETQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQAESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARGYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+++GL + DDG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNNMLPTIVADLKEQGLAKEDDGAQVVFLDEYKNKDGDPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRFEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  218 bits (556), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 187/354 (52%), Gaps = 57/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQAESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARGYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   +  +V  L+++G                         + + K
Sbjct: 248 NVSLTRDDVMGESMYNNMLPTIVADLKEQGLAKEDDGAQVVFLDEYKNKDGDPMGVIIQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRFEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E +     
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELAEEEKATIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AGI+
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGIS 478



 Score =  120 bits (301), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAEEEKATIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AGI+ + L        + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGISMDSLE-----GEIKVTEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    TV   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----TVKQSRLKLAALTAKTIKQGLSLLGIETLERM 577



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+        +L  +  K+E A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------NLDGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL   +  +Q    + +      + +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FLNIFLDEAFLAKQADAALADSRLGVAVAETQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|209695554|ref|YP_002263483.1| arginyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|238065084|sp|B6EI57.1|SYR_ALISL RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|208009506|emb|CAQ79795.1| arginyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 577

 Score =  244 bits (622), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 168/494 (34%), Positives = 248/494 (50%), Gaps = 55/494 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +      L  K  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALADERLGVALETKQNIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V R NH+GDWGTQFGMLIA+L+    +    S  ++DL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHNVTRANHIGDWGTQFGMLIANLERIQKEKGEVSMELSDLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F   A   VV LQ  D      W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVTARGYVVKLQGGDAFCADMWKKLVDVTMVQNQRNYDRLNVSLTRDNVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L++KGL    DG ++++ +   ++   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNSMLAPIVADLQEKGLAVESDGAQVVYLDEYKNKDGDPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRFEELNADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADLQ--------AFYKESKKRFDEDEIFKKRAYQCVV 646
            FGM++      F      +  +ADL         A  +E  K    +E  K      + 
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADLLDEAEQRAIALIEEKNKDLSTEEKAKIATTVAMA 428

Query: 647 ALQRFDPDYKKAWEMICDVSR-RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGN 705
           A++              D+S+ R    I+D  N+   E   + Y ++    V  +  K +
Sbjct: 429 AVK------------YSDLSKHRTTDYIFDWDNILAFEGNTAPYMQYAYTRVASIFSKAD 476

Query: 706 LSLTKKLGIVYVTD 719
           LS+    G V +TD
Sbjct: 477 LSMDNLAGEVKITD 490



 Score =  209 bits (532), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 191/357 (53%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVTRANHIGDWGTQFGMLIANLERIQKEKGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+ESKK +DEDE F   A   VV LQ  D      W+ + DV+    Q+ YDRL
Sbjct: 188 SDLEGFYRESKKLYDEDEEFAVTARGYVVKLQGGDAFCADMWKKLVDVTMVQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   +  +V  L++KG                         + + K
Sbjct: 248 NVSLTRDNVMGESMYNSMLAPIVADLQEKGLAVESDGAQVVYLDEYKNKDGDPMGVIVQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRFEELNADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D + FKTR+G TV+L++LLDE  +R++  +++KN+  +L+  E ++    
Sbjct: 367 HHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAEQRAIALIEEKNK--DLSTEEKAKIATT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KY+DLS +R  DY+F +D +L   GNTA Y+ YAYTR+ASI   A ++ ++
Sbjct: 425 VAMAAVKYSDLSKHRTTDYIFDWDNILAFEGNTAPYMQYAYTRVASIFSKADLSMDN 481



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 109/189 (57%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R++  +++KN+  +L+  E ++    VA   +KY+DLS +R  DY+F +D +L   GNT
Sbjct: 400  QRAIALIEEKNK--DLSTEEKAKIATTVAMAAVKYSDLSKHRTTDYIFDWDNILAFEGNT 457

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A Y+ YAYTR+ASI   A ++ ++L     +  V +  EKE AL   L++  + +  V  
Sbjct: 458  APYMQYAYTRVASIFSKADLSMDNL-----AGEVKITDEKEKALITKLMQFEEAVQAVAS 512

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
            +   H +C YL++++  FS FY+ C  +  D E    ++   RL LA  TAK +K+  D+
Sbjct: 513  EGQPHLMCAYLFELAGQFSSFYEACPILNNDDE----SIKQSRLKLAALTAKTIKQGLDL 568

Query: 1111 LNIRTVHKM 1119
            L I T+ +M
Sbjct: 569  LGIETLERM 577



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +      L  K  ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALADERLGVALETKQNIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|117922106|ref|YP_871298.1| arginyl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|166232843|sp|A0L1H3.1|SYR_SHESA RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|117614438|gb|ABK49892.1| arginyl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 581

 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/365 (39%), Positives = 214/365 (58%), Gaps = 37/365 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K        KNP ++AQ I          N   +  + K+E+A PGF+
Sbjct: 41  GDLATNLAMMLTK-----AAGKNPRELAQLIID--------NLPASNYVAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F+       Q++  I +   G++ PT      ++VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFIDDSALANQLQAAISDEHLGIKLPTPQT---IVVDYSSPNLAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKK 420
           ++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K 
Sbjct: 145 SVVRTLEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAQNGEQAQLELSDLETFYRAAKL 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y+RL V+LT     GE
Sbjct: 205 RFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTRADVHGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           S Y   +EQ+V  L+ +GLL   +G K+++ E     +  ++P+ I K+DGG+ Y T+DL
Sbjct: 265 SAYNADLEQVVKDLDAQGLLTQSNGAKVVFQEEFRNKEGEALPVIIQKADGGYLYATTDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           AA+R R    KAD ++Y  DL Q +HF+ +        ++++L +++ +D + L H+G +
Sbjct: 325 AAMRYRSSVLKADRVLYFVDLRQALHFQQVF-------SLAKLAKFVRND-MSLEHLG-F 375

Query: 593 GTQFG 597
           GT  G
Sbjct: 376 GTMNG 380



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 186/345 (53%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRTLEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAQNGEQAQLELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y+RL V+LT 
Sbjct: 199 YRAAKLRFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNL---------------------------------- 706
               GES Y   +EQ+V  L+ +G L                                  
Sbjct: 259 ADVHGESAYNADLEQVVKDLDAQGLLTQSNGAKVVFQEEFRNKEGEALPVIIQKADGGYL 318

Query: 707 -------------SLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                        S+ K   ++Y  DL Q +HF+ +   AK A  +  N   ++ +GFG 
Sbjct: 319 YATTDLAAMRYRSSVLKADRVLYFVDLRQALHFQQVFSLAKLAKFVR-NDMSLEHLGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTR+G  VKL +LLDE   R+L+ ++ KN   ++    L+E  + V    +
Sbjct: 378 MNGEDGRPFKTRTGGVVKLVDLLDEANTRALELVRSKN--PDMDEATLAEIARVVGISAV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480



 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 108/188 (57%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++    L+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEATLAEIARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I + A     DL  A     + LEHEKE  L   L +  ++L  V   
Sbjct: 464  PYLLYAYTRVAGIFKRA--TDIDLSQA----KIVLEHEKEKDLGNKLAQFGEILSRVVDK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YLY+++ AFS FY+ C  +  D + +  +    RLLL++ TA  ++K  ++L
Sbjct: 518  GQPHVLCGYLYELAGAFSSFYEACPVLAADNDEQKHS----RLLLSQLTANTLQKGLNLL 573

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 574  GIETLERM 581



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 19/107 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K        KNP ++AQ I          N   +  + K+E A PGF+
Sbjct: 41  GDLATNLAMMLTK-----AAGKNPRELAQLIID--------NLPASNYVAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F+       Q++  I +   G++ PT      ++VD+SSPN+A++
Sbjct: 88  NFFIDDSALANQLQAAISDEHLGIKLPTPQT---IVVDYSSPNLAKE 131


>gi|24375609|ref|NP_719652.1| arginyl-tRNA synthetase ArgS [Shewanella oneidensis MR-1]
 gi|38372524|sp|Q8E9Y7.1|SYR_SHEON RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|24350506|gb|AAN57096.1| arginyl-tRNA synthetase ArgS [Shewanella oneidensis MR-1]
          Length = 581

 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 146/365 (40%), Positives = 212/365 (58%), Gaps = 37/365 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K        KNP ++AQ I          N   +  + K+E+A PGF+
Sbjct: 41  GDLATNVAMMLTK-----AAGKNPRELAQLIID--------NLPASAYVAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F+       Q++  I +   G++ P       V+VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFIDDSALANQLQAAIGDEHLGIKLPAPQT---VVVDYSSPNLAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKK 420
           ++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K 
Sbjct: 145 SVVRTLEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAQLELSDLETFYRAAKL 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE   F  RA Q VVALQ  D    K W    D+S     ++Y+RL V+LT     GE
Sbjct: 205 RFDESAEFATRARQLVVALQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTRADVHGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDL 532
           S Y   +EQ+V  L  KGLL   +G K+++ E+  +     +P+ I K+DGG+ Y T+DL
Sbjct: 265 SAYNADLEQVVNDLAAKGLLTESNGAKVVFQEEFRTKEGEPLPVIIQKADGGYLYATTDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           AA+R R    KAD ++Y  DL Q +HF+ +        ++++L +++  D + L H+G +
Sbjct: 325 AAMRYRSNVLKADRVLYFVDLRQALHFQQVF-------SLAKLAKFVRED-MSLEHLG-F 375

Query: 593 GTQFG 597
           GT  G
Sbjct: 376 GTMNG 380



 Score =  222 bits (565), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 187/345 (54%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRTLEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAQLELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA Q VVALQ  D    K W    D+S     ++Y+RL V+LT 
Sbjct: 199 YRAAKLRFDESAEFATRARQLVVALQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLS--------------------------------- 707
               GES Y   +EQ+V  L  KG L+                                 
Sbjct: 259 ADVHGESAYNADLEQVVNDLAAKGLLTESNGAKVVFQEEFRTKEGEPLPVIIQKADGGYL 318

Query: 708 --------------LTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                         + K   ++Y  DL Q +HF+ +   AK A  +  + + ++ +GFG 
Sbjct: 319 YATTDLAAMRYRSNVLKADRVLYFVDLRQALHFQQVFSLAKLAKFVREDMS-LEHLGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTR+G  VKL +LLDE   R+L+ ++ KN   ++    L+E  + V    +
Sbjct: 378 MNGEDGRPFKTRTGGVVKLVDLLDEANTRALELVRSKN--PDMDEATLAEIARVVGISAV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 108/188 (57%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++    L+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEATLAEIARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I + A     DL  A     + LEHEKE  L   L +  ++L  V   
Sbjct: 464  PYLLYAYTRVAGIFKRA--TDVDLSQA----KIVLEHEKEKDLGNKLAQFGEILSRVVDK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YLY+++ AFS FY+ C  +  D + +  +    RLLL++ TA  ++K  ++L
Sbjct: 518  GQPHVLCGYLYELAGAFSSFYEACPVLAADNDEQKHS----RLLLSQLTASTLQKGLNLL 573

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 574  GIETLERM 581



 Score = 47.8 bits (112), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 19/107 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K        KNP ++AQ I          N   +  + K+E A PGF+
Sbjct: 41  GDLATNVAMMLTK-----AAGKNPRELAQLIID--------NLPASAYVAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F+       Q++  I +   G++ P       V+VD+SSPN+A++
Sbjct: 88  NFFIDDSALANQLQAAIGDEHLGIKLPAPQT---VVVDYSSPNLAKE 131


>gi|113971826|ref|YP_735619.1| arginyl-tRNA synthetase [Shewanella sp. MR-4]
 gi|123130050|sp|Q0HEF5.1|SYR_SHESM RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|113886510|gb|ABI40562.1| arginyl-tRNA synthetase [Shewanella sp. MR-4]
          Length = 581

 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/365 (39%), Positives = 214/365 (58%), Gaps = 37/365 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K        KNP ++AQ I          N   +  + K+E+A PGF+
Sbjct: 41  GDLATNLAMMLTK-----AAGKNPRELAQLIID--------NLPASAYVAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F+       Q++  I +   G++ PT      ++VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFIDDSALANQLQAAISDEHLGIKLPTPQT---IVVDYSSPNLAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKK 420
           ++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K 
Sbjct: 145 SVVRTLEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAQNGEQAQLELSDLETFYRAAKL 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y+RL V+LT     GE
Sbjct: 205 RFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTRADVHGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           S Y   +EQ+V  L+ +GLL   +G K+++ E     +  ++P+ I K+DGG+ Y T+DL
Sbjct: 265 SAYNADLEQVVKDLDAQGLLTQSNGAKVVFQEEFRNKEGEALPVIIQKADGGYLYATTDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           AA+R R    KAD ++Y  DL Q +HF+ +        ++++L +++ +D + L H+G +
Sbjct: 325 AAMRYRSSVLKADRVLYFVDLRQALHFQQVF-------SLAKLAKFVRND-MSLEHLG-F 375

Query: 593 GTQFG 597
           GT  G
Sbjct: 376 GTMNG 380



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 186/345 (53%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRTLEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAQNGEQAQLELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y+RL V+LT 
Sbjct: 199 YRAAKLRFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNL---------------------------------- 706
               GES Y   +EQ+V  L+ +G L                                  
Sbjct: 259 ADVHGESAYNADLEQVVKDLDAQGLLTQSNGAKVVFQEEFRNKEGEALPVIIQKADGGYL 318

Query: 707 -------------SLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                        S+ K   ++Y  DL Q +HF+ +   AK A  +  N   ++ +GFG 
Sbjct: 319 YATTDLAAMRYRSSVLKADRVLYFVDLRQALHFQQVFSLAKLAKFVR-NDMSLEHLGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTR+G  VKL +LLDE   R+L+ ++ KN   ++    L+E  + V    +
Sbjct: 378 MNGEDGRPFKTRTGGVVKLVDLLDEANTRALELVRSKN--PDMDEATLAEIARVVGISAV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480



 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 108/188 (57%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++    L+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEATLAEIARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I + A     DL  A     + LEHEKE  L   L +  ++L  V   
Sbjct: 464  PYLLYAYTRVAGIFKRA--TDIDLSQA----KIVLEHEKEKDLGNKLAQFGEILSRVIDK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YLY+++ AFS FY+ C  +  D + +  +    RLLL++ TA  ++K  ++L
Sbjct: 518  GQPHVLCGYLYELAGAFSSFYEACPVLAADNDEQKHS----RLLLSQLTANTLQKGLNLL 573

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 574  GIETLERM 581



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 19/107 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K        KNP ++AQ I          N   +  + K+E A PGF+
Sbjct: 41  GDLATNLAMMLTK-----AAGKNPRELAQLIID--------NLPASAYVAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F+       Q++  I +   G++ PT      ++VD+SSPN+A++
Sbjct: 88  NFFIDDSALANQLQAAISDEHLGIKLPTPQT---IVVDYSSPNLAKE 131


>gi|260776440|ref|ZP_05885335.1| arginyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607663|gb|EEX33928.1| arginyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 577

 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 214/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +         +  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAESALSDSRLGVAAEAQKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQGGDEYCAEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+++GL + DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPGIVADLKEQGLAQEDDGAQVVFLEEYKNKDGEPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 322 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPEEVTLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 190/357 (53%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+AFY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEAFYRESKKLYDEDEEFAVKARNYVVKLQGGDEYCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   +  +V  L+++G                         + + K
Sbjct: 248 NVSLTRENVMGESMYNDMLPGIVADLKEQGLAQEDDGAQVVFLEEYKNKDGEPMGVIIQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P +  ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PEEVTLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D + FKTR+G TV+L++LLDE   R++  ++ KN   +L   E       
Sbjct: 367 HHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAEERAIKLIESKN--PDLETAEKQNIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AGI+ ++
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGISMDE 481



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 104/188 (55%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R++  ++ KN   +L   E       VA   +KYADLS +R  DYVF +D ML   GNTA
Sbjct: 401  RAIKLIESKN--PDLETAEKQNIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTA 458

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI   AGI+ ++L     +  + +  EKE +L   LL+  + +  V R+
Sbjct: 459  PYMQYAYTRVASIFAKAGISMDEL-----AGDIQITEEKEKSLIAKLLQFEEAVQSVARE 513

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L
Sbjct: 514  GQPHIMCSYLFELAGQFSSFYEACPILNTEDE----SVKQSRLKLAALTAKTIKQGLSLL 569

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 570  GIDTLERM 577



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +         +  ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAESALSDSRLGVAAEAQKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|343502545|ref|ZP_08740394.1| arginyl-tRNA synthetase [Vibrio tubiashii ATCC 19109]
 gi|418478693|ref|ZP_13047790.1| arginyl-tRNA synthetase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
 gi|342814175|gb|EGU49125.1| arginyl-tRNA synthetase [Vibrio tubiashii ATCC 19109]
 gi|384573728|gb|EIF04218.1| arginyl-tRNA synthetase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
          Length = 577

 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 213/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLEGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +        ++  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQADVALADARLGVAAEEQKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH VVR NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVVRANHIGDWGTQFGMLIANLERVQKESGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  RA   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVRARNYVVKLQSGDEYCAEMWKKLVDVTMVQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L+++GL + DDG ++++      +D  ++ + I K DGGF Y T+D+A 
Sbjct: 262 YNDMLPGIVADLKEQGLAQEDDGAQVVFLDEYKNKDGEAMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 322 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPEEVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/357 (37%), Positives = 192/357 (53%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH VVR NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVVRANHIGDWGTQFGMLIANLERVQKESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ESKK +DEDE F  RA   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 SDLEAFYRESKKLYDEDEEFAVRARNYVVKLQSGDEYCAEMWKKLVDVTMVQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   +  +V  L+++G                         + + K
Sbjct: 248 NVSLTRDDVMGESMYNDMLPGIVADLKEQGLAQEDDGAQVVFLDEYKNKDGEAMGVIIQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P +  ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PEEVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D + FKTR+G TV+L++LLDE   R++  ++ KN   +L   E +   + 
Sbjct: 367 HHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAEERAIKLIESKN--ADLASEEKANIAKT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YA+TR++SI   AGI+ ++
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAFTRVSSIFAKAGISMDE 481



 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R++  ++ KN   +L   E +   + VA   +KYADLS +R  DYVF +D ML   GNTA
Sbjct: 401  RAIKLIESKN--ADLASEEKANIAKTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTA 458

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YA+TR++SI   AGI+ ++L     S  + +  EKE AL   LL+  + +  V R+
Sbjct: 459  PYMQYAFTRVSSIFAKAGISMDEL-----SGEIKVTEEKEKALIAKLLQFEEAVQSVARE 513

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L
Sbjct: 514  GQPHIMCSYLFELAGQFSSFYEACPILSSEDE----SVKQSRLKLAALTAKTIKQGLSLL 569

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 570  GIDTLERM 577



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLEGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +        ++  ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQADVALADARLGVAAEEQKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|114045966|ref|YP_736516.1| arginyl-tRNA synthetase [Shewanella sp. MR-7]
 gi|123131795|sp|Q0HZJ6.1|SYR_SHESR RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|113887408|gb|ABI41459.1| arginyl-tRNA synthetase [Shewanella sp. MR-7]
          Length = 581

 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/365 (39%), Positives = 214/365 (58%), Gaps = 37/365 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K        KNP ++AQ I          N   +  + K+E+A PGF+
Sbjct: 41  GDLATNLAMMLTK-----AAGKNPRELAQLIID--------NLPASAYVAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F+       Q++  I +   G++ PT      ++VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFIDDSALANQLQAAISDEHLGIKLPTPQT---IVVDYSSPNLAKEMHVGHLRSTIIGD 144

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKK 420
           ++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K 
Sbjct: 145 SVVRTLEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAQNGEQAQLELSDLETFYRAAKL 204

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y+RL V+LT     GE
Sbjct: 205 RFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTRADVHGE 264

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           S Y   +EQ+V  L+ +GLL   +G K+++ E     +  ++P+ I K+DGG+ Y T+DL
Sbjct: 265 SAYNADLEQVVKDLDAQGLLTQSNGAKVVFQEEFRNKEGEALPVIIQKADGGYLYATTDL 324

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           AA+R R    KAD ++Y  DL Q +HF+ +        ++++L +++ +D + L H+G +
Sbjct: 325 AAMRYRSSVLKADRVLYFVDLRQALHFQQVF-------SLAKLAKFVRND-MSLEHLG-F 375

Query: 593 GTQFG 597
           GT  G
Sbjct: 376 GTMNG 380



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 186/345 (53%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRTLEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAQNGEQAQLELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA Q VV LQ  D    K W    D+S     ++Y+RL V+LT 
Sbjct: 199 YRAAKLRFDESAEFATRARQLVVELQSGDEYCNKLWREFNDISLSHCHEVYERLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNL---------------------------------- 706
               GES Y   +EQ+V  L+ +G L                                  
Sbjct: 259 ADVHGESAYNADLEQVVKDLDAQGLLTQSNGAKVVFQEEFRNKEGEALPVIIQKADGGYL 318

Query: 707 -------------SLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                        S+ K   ++Y  DL Q +HF+ +   AK A  +  N   ++ +GFG 
Sbjct: 319 YATTDLAAMRYRSSVLKADRVLYFVDLRQALHFQQVFSLAKLAKFVR-NDMSLEHLGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTR+G  VKL +LLDE   R+L+ ++ KN   ++    L+E  + V    +
Sbjct: 378 MNGEDGRPFKTRTGGVVKLVDLLDEANTRALELVRSKN--PDMDEATLAEIARVVGISAV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480



 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 108/188 (57%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++    L+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEATLAEIARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I + A     DL  A     + LEHEKE  L   L +  ++L  V   
Sbjct: 464  PYLLYAYTRVAGIFKRA--TDIDLSQA----KIVLEHEKEKDLGNKLAQFGEILSRVVDK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YLY+++ AFS FY+ C  +  D + +  +    RLLL++ TA  ++K  ++L
Sbjct: 518  GQPHVLCGYLYELAGAFSSFYEACPVLAADNDEQKHS----RLLLSQLTANTLQKGLNLL 573

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 574  GIETLERM 581



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 19/107 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K        KNP ++AQ I          N   +  + K+E A PGF+
Sbjct: 41  GDLATNLAMMLTK-----AAGKNPRELAQLIID--------NLPASAYVAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F+       Q++  I +   G++ PT      ++VD+SSPN+A++
Sbjct: 88  NFFIDDSALANQLQAAISDEHLGIKLPTPQT---IVVDYSSPNLAKE 131


>gi|326796968|ref|YP_004314788.1| arginyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326547732|gb|ADZ92952.1| Arginyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 577

 Score =  243 bits (621), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 155/435 (35%), Positives = 232/435 (53%), Gaps = 50/435 (11%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  +    +Q A    G    S A   +    +FGD+Q N  M + K  K      NP  
Sbjct: 3   IQTLLNQRIQAAMIAAGAPEESPALVRQSAKVQFGDYQANGIMGVAKKLK-----TNPRA 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI-------IVN 323
            A+ +   +         L  + DK+E+A PGF+NVFL   +  ++ K +       +V 
Sbjct: 58  FAEQVLEKL--------DLTDLADKVEIAGPGFINVFLKNAWLAQEQKSLRKSERLDVVT 109

Query: 324 GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
             +P T      V+VD+S+PN+AKEMHVGHLRST+IGD + R LE+LGH VVR NHVGDW
Sbjct: 110 VSEPQT------VVVDYSAPNLAKEMHVGHLRSTVIGDAVVRTLEFLGHKVVRQNHVGDW 163

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGML+A+++    +    S  ++DL+ FY+E+KK FD+DE F  RA + VV LQ  D
Sbjct: 164 GTQFGMLLAYMERLRAESSEISMALSDLETFYREAKKCFDDDEAFSVRARELVVKLQSGD 223

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVPYLEKKGLLELD 500
            + K  W+   ++S    ++ Y  L V+L  +    ES Y   ++ ++  L+ KGL++ D
Sbjct: 224 EECKALWQDFINISLEHCEETYQMLGVSLERKNVMPESAYNDDLQNVINDLDAKGLIKED 283

Query: 501 DGRKIMWGED----RGSI-PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
            G K ++ E+     G I P+ + K+ GGF Y T+DLAA+R R    KAD  +Y  D  Q
Sbjct: 284 QGAKCVFLEEFANKDGEITPIIVQKTGGGFLYSTTDLAAVRYRQNVLKADRALYFVDARQ 343

Query: 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP 615
            +HF  +        T+SR   +   D + L H+  +GT  G       D  P + T+S 
Sbjct: 344 SLHFEQIF-------TLSRKAGF-ADDSISLEHM-PFGTVMG------SDGKP-FKTRSG 387

Query: 616 PIADLQAFYKESKKR 630
            +A L A  +E+++R
Sbjct: 388 GVAKLSALLEEAQER 402



 Score =  209 bits (532), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/355 (36%), Positives = 183/355 (51%), Gaps = 57/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    ST+IGD + R LE+LGH VVR NHVGDWGTQFGML+A+++    +    S  +
Sbjct: 133 HLR----STVIGDAVVRTLEFLGHKVVRQNHVGDWGTQFGMLLAYMERLRAESSEISMAL 188

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+E+KK FD+DE F  RA + VV LQ  D + K  W+   ++S    ++ Y  L
Sbjct: 189 SDLETFYREAKKCFDDDEAFSVRARELVVKLQSGDEECKALWQDFINISLEHCEETYQML 248

Query: 678 NVTLTERG---ESFYQKHMEQLVPYLEKKGNLS-----------------------LTKK 711
            V+L  +    ES Y   ++ ++  L+ KG +                        + +K
Sbjct: 249 GVSLERKNVMPESAYNDDLQNVINDLDAKGLIKEDQGAKCVFLEEFANKDGEITPIIVQK 308

Query: 712 LG------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
            G                         +Y  D  Q +HF  +   ++KAG  + +   ++
Sbjct: 309 TGGGFLYSTTDLAAVRYRQNVLKADRALYFVDARQSLHFEQIFTLSRKAGFAD-DSISLE 367

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
            + FG V+G D K FKTRSG   KLS LL+E   R+   +  KN   ++   EL    + 
Sbjct: 368 HMPFGTVMGSDGKPFKTRSGGVAKLSALLEEAQERAYKLVASKN--PDMAEDELRNIGRV 425

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           V    +KYADLS NR  DYVF++D ML   GNTA YL YAY+R+ASI R A I++
Sbjct: 426 VGVASVKYADLSKNRTSDYVFNWDTMLSFEGNTAPYLQYAYSRVASIVRNADIDA 480



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 98/179 (54%), Gaps = 10/179 (5%)

Query: 941  NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
            +++ ++   EL    + V    +KYADLS NR  DYVF++D ML   GNTA YL YAY+R
Sbjct: 409  SKNPDMAEDELRNIGRVVGVASVKYADLSKNRTSDYVFNWDTMLSFEGNTAPYLQYAYSR 468

Query: 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
            +ASI R A     D+  AA    +S+  ++E ALA  L++  + +  V  D   H LC Y
Sbjct: 469  VASIVRNA-----DIDAAALQGDISVIEDQERALAVKLVQFEEAIQQVGNDGMPHFLCAY 523

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            LY+++  F  FY+ C  ++ D E     V   RL LA  TA  +K    +L I T+ +M
Sbjct: 524  LYELAGTFMSFYEACPILKADEE-----VKNSRLQLALNTASTLKLGLSLLGIETLERM 577



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 26/145 (17%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  +    +Q A    G    S A   +    +FGD+Q N  M + K  K      NP  
Sbjct: 3   IQTLLNQRIQAAMIAAGAPEESPALVRQSAKVQFGDYQANGIMGVAKKLK-----TNPRA 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI-------IVN 127
            A+ +   +         L  + DK+E A PGF+NVFL   +  ++ K +       +V 
Sbjct: 58  FAEQVLEKL--------DLTDLADKVEIAGPGFINVFLKNAWLAQEQKSLRKSERLDVVT 109

Query: 128 GVQPPTLNKKLRVLVDFSSPNIARK 152
             +P T      V+VD+S+PN+A++
Sbjct: 110 VSEPQT------VVVDYSAPNLAKE 128


>gi|238897849|ref|YP_002923528.1| arginine tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259511649|sp|C4K487.1|SYR_HAMD5 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|229465606|gb|ACQ67380.1| arginine tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 576

 Score =  243 bits (620), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 149/408 (36%), Positives = 230/408 (56%), Gaps = 45/408 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++ +LSD   HA+ +A    G    S A  +     +FGD+Q N  M+  K      +
Sbjct: 1   MNIQLFLSDRIRHALIMA----GAPDDSDAQLHPSTKAQFGDYQANGVMSAAK-----KQ 51

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
           +  P ++A+ +          +  L+ +  K+E+A PGF+N+FL+  +  ++I+ + +  
Sbjct: 52  RIPPRELAERVLE--------HLDLSDIAKKVEIAGPGFINIFLNEQWISQKIESVFIGP 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+ P T     R+++D+S+PN+AKEMHVGHLRSTIIGD ++R L +LGH V+R NH+G
Sbjct: 104 KLGLTPVTPQ---RIVIDYSAPNVAKEMHVGHLRSTIIGDAMARTLSFLGHHVIRANHIG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+    D+  +   ++DL+ FY+E+KK +DEDEIF +RA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLEKIQHDHALEM-VLSDLEHFYREAKKHYDEDEIFAQRARDYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            DP  ++ W  + D++       Y+RL VTLT     GES Y   +  +V  L  KG+  
Sbjct: 220 GDPYCREMWRKLVDITMTQNHLSYERLKVTLTPEDMMGESLYNDMLPNIVEDLIAKGVAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            D G  +++ E   ++   PM +V  K DGG+ Y T+D+A ++ R E  KAD I+Y  D 
Sbjct: 280 KDQGSVLVFLEEYQNKIGEPMGVVIQKKDGGYLYATTDIACVKYRCETLKADRILYYIDS 339

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
            Q  H   +        TI+RL  Y+   V   +H+      FGM++ 
Sbjct: 340 RQNQHLAQVW-------TITRLAGYVPESVSLEHHM------FGMMLG 374



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 195/362 (53%), Gaps = 54/362 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R L +LGH V+R NH+GDWGTQFGMLIA+L+    D+  +   ++DL+ FY
Sbjct: 135 STIIGDAMARTLSFLGHHVIRANHIGDWGTQFGMLIAYLEKIQHDHALEM-VLSDLEHFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +DEDEIF +RA   VV LQ  DP  ++ W  + D++       Y+RL VTLT  
Sbjct: 194 REAKKHYDEDEIFAQRARDYVVKLQSGDPYCREMWRKLVDITMTQNHLSYERLKVTLTPE 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L  KG                         + + KK G    
Sbjct: 254 DMMGESLYNDMLPNIVEDLIAKGVAVKDQGSVLVFLEEYQNKIGEPMGVVIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              I+Y  D  Q  H   +    + AG + P    ++   FG++
Sbjct: 314 ATTDIACVKYRCETLKADRILYYIDSRQNQHLAQVWTITRLAGYV-PESVSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKLS+LLDE + R+   ++ KN   +L  T+L+   QAVA G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLSDLLDEAVERAGQLIRGKN--PDLNETDLNNLIQAVAIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS NR  DY+F +D+ML   GNTA Y+ YAY+R+ S+ + +G++ +    P   Q E
Sbjct: 431 YADLSKNRTTDYIFDWDRMLSFEGNTAPYIQYAYSRVTSLFKKSGLDEKKIMSPVIIQEE 490

Query: 875 VE 876
            E
Sbjct: 491 KE 492



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 109/180 (60%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ +L  T+L+   QAVA G +KYADLS NR  DY+F +D+ML   GNTA Y+ YAY+
Sbjct: 406  RGKNPDLNETDLNNLIQAVAIGAVKYADLSKNRTTDYIFDWDRMLSFEGNTAPYIQYAYS 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ + +G++ + +      +PV ++ EKE +LA  LL+  +++  V RD   H +C 
Sbjct: 466  RVTSLFKKSGLDEKKIM-----SPVIIQEEKERSLAILLLQFEEMISTVARDGTPHLMCS 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++T FS FY++C  +      K + +   RL LA  TAK +K     L I TV +M
Sbjct: 521  YLYDLATRFSIFYEHCPIL----NAKNEQIRQSRLKLAWLTAKTLKLGLKNLGIETVERM 576



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 77/147 (52%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++ +LSD   HA+ +A    G    S A  +     +FGD+Q N  M+  K      +
Sbjct: 1   MNIQLFLSDRIRHALIMA----GAPDDSDAQLHPSTKAQFGDYQANGVMSAAK-----KQ 51

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
           +  P ++A+ +          +  L+ +  K+E A PGF+N+FL+  +  ++++ + +  
Sbjct: 52  RIPPRELAERVLE--------HLDLSDIAKKVEIAGPGFINIFLNEQWISQKIESVFIGP 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             G+ P T     R+++D+S+PN+A++
Sbjct: 104 KLGLTPVTPQ---RIVIDYSAPNVAKE 127


>gi|271500744|ref|YP_003333769.1| arginyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270344299|gb|ACZ77064.1| arginyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 576

 Score =  243 bits (620), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 145/354 (40%), Positives = 195/354 (55%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIAHL+D   D  T+   +ADL+AFY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAHLEDVQNDS-TQDLELADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK++D+DE+F +RA   VV LQ  D   +  W  + D++    Q+ YDRLNV+LT  
Sbjct: 194 REAKKQYDDDEVFAERARGYVVKLQGGDEYCRSMWRKLVDITMVQNQRSYDRLNVSLTPE 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   +  +V  L+ KG                                     
Sbjct: 254 NVMGESLYNAMLPDIVADLKAKGLAEESEGAIVVYLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 705 ---NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +++  K    KLG   ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYEKLGANRVLYYIDSRQHQHLMQAWSIVRKAGYV-PESVSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T+KLSELLDE   R+L  +  KN   E+  TEL +  Q V+ G +K
Sbjct: 373 LGKDGKPFKTRAGGTIKLSELLDEAYERALTLIAGKN--PEMERTELEQLAQVVSIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR++SI + AG+      +P
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVSSIFKRAGVEESSLTQP 484



 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 152/414 (36%), Positives = 224/414 (54%), Gaps = 57/414 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+    A+  A    G    S A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQALLSEKVHQAMIAA----GAPADSEAMVRQSAKAQFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ + + +         L  +  K E+A PGF+N+FL   +   Q++  +   
Sbjct: 53  -MPPRQLAEKVVNTL--------QLDGIAAKTEIAGPGFINIFLDSQWLSAQLEHALAAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V+ V+P T      ++VD+S+PN+AKEMHVG+LRSTIIGD   R LE+LGH V+R N
Sbjct: 104 KLGVSPVEPQT------IVVDYSAPNVAKEMHVGNLRSTIIGDAAVRTLEFLGHHVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIAHL+D   D  T+   +ADL+AFY+E+KK++D+DE+F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAHLEDVQNDS-TQDLELADLEAFYREAKKQYDDDEVFAERARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   +  W  + D++    Q+ YDRLNV+LT     GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRSMWRKLVDITMVQNQRSYDRLNVSLTPENVMGESLYNAMLPDIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L E  +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E+  A+ +
Sbjct: 277 LAEESEGAIVVYLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYEKLGANRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +Y  D  Q  H  L++  +I+     R   Y+   V   +H+      FGM++ 
Sbjct: 334 LYYIDSRQ--HQHLMQAWSIV-----RKAGYVPESVSLEHHM------FGMMLG 374



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 107/188 (56%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  +  KN   E+  TEL +  Q V+ G +KYADLS NR  DY+F +D ML   GNTA
Sbjct: 400  RALTLIAGKN--PEMERTELEQLAQVVSIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR++SI + AG+    L     + P+ L  E E ALA  LL+  + +  V RD
Sbjct: 458  PYMQYAYTRVSSIFKRAGVEESSL-----TQPIVLTAEHEQALATRLLQFEETVTTVARD 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY+NC  +  D +    +    RL LA  TAK +K   D L
Sbjct: 513  GTPHVMCAYLYDLAGLFSGFYENCPILNADND----STRQSRLKLALLTAKTLKTGLDTL 568

Query: 1112 NIRTVHKM 1119
             I+TV KM
Sbjct: 569  GIQTVEKM 576



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+    A+  A    G    S A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQALLSEKVHQAMIAA----GAPADSEAMVRQSAKAQFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ + + +         L  +  K E A PGF+N+FL   +   Q++  +   
Sbjct: 53  -MPPRQLAEKVVNTL--------QLDGIAAKTEIAGPGFINIFLDSQWLSAQLEHALAAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              V+ V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVSPVEPQT------IVVDYSAPNVAKE 127


>gi|91794705|ref|YP_564356.1| arginyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|123060581|sp|Q12IU3.1|SYR_SHEDO RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|91716707|gb|ABE56633.1| arginyl-tRNA synthetase [Shewanella denitrificans OS217]
          Length = 581

 Score =  243 bits (620), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 153/395 (38%), Positives = 226/395 (57%), Gaps = 38/395 (9%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K+       KNP ++AQ    ++   L  +  +AKV    E+A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKNPRELAQ----LIIDNLPPSSHVAKV----EIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F+       Q++  + +     TL +   ++VD+SSPN+AKEMHVGHLRSTIIGD++ 
Sbjct: 88  NFFIDDNALATQLEQALNDEHFGITLPEPQTIVVDYSSPNLAKEMHVGHLRSTIIGDSVV 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKKRFD 423
           R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K RFD
Sbjct: 148 RALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAQLELSDLETFYRAAKLRFD 207

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFY 480
           E   F  RA Q VVALQ  D    K W+   D+S      +Y+RL V+LT     GES Y
Sbjct: 208 ESTDFATRARQLVVALQSGDEYCNKLWQEFNDISLSHCHDVYERLGVSLTRADVHGESAY 267

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAI 535
              +EQ+V  L+ KGLL   +G K+++ E     +   +P+ I K+DGG+ Y TSDLAA+
Sbjct: 268 NADLEQVVKDLDAKGLLSESNGAKVVFQEAFRTKEGEPLPVIIQKADGGYLYATSDLAAM 327

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 595
           R R +  KAD  +Y  DL Q +HF+ +        ++++L +++  D ++L H G +GT 
Sbjct: 328 RYRSKVLKADRALYFVDLRQALHFQQVF-------SLAKLAKFVRKD-MQLEHNG-FGTM 378

Query: 596 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            G      +D  P + T+S  +  L     E+  R
Sbjct: 379 NG------EDGRP-FKTRSGGVVKLVDLLDEANNR 406



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 186/345 (53%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE+LGH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAQLELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA Q VVALQ  D    K W+   D+S      +Y+RL V+LT 
Sbjct: 199 YRAAKLRFDESTDFATRARQLVVALQSGDEYCNKLWQEFNDISLSHCHDVYERLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV------------------------- 715
               GES Y   +EQ+V  L+ KG LS +    +V                         
Sbjct: 259 ADVHGESAYNADLEQVVKDLDAKGLLSESNGAKVVFQEAFRTKEGEPLPVIIQKADGGYL 318

Query: 716 ----------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                 Y  DL Q +HF+ +   AK A  +  +  +++  GFG 
Sbjct: 319 YATSDLAAMRYRSKVLKADRALYFVDLRQALHFQQVFSLAKLAKFVRKD-MQLEHNGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTRSG  VKL +LLDE   R+L+ ++ KN   ++    L+E  + V    +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLVDLLDEANNRALELVRSKN--PDMDEATLTEIARVVGISSV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 106/188 (56%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++    L+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEATLTEIARVVGISSVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I + A    ED+ +      + LEH+KE  LA  L +  + L  +T  
Sbjct: 464  PYLLYAYTRVAGIFKRA----EDIDLT--DAKIVLEHDKEKELATKLAQFGETLYKMTDK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               + LC YLY+++ AFS FY+ C  +  D   +       RLLLA+ TA  + K   +L
Sbjct: 518  AQPNMLCNYLYELAGAFSSFYEACPVLAADTPAQ----QGSRLLLAKLTANTLNKGLSLL 573

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 574  GIETLERM 581



 Score = 47.4 bits (111), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 13/104 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K+       KNP ++AQ    ++   L  +  +AKV    E A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKNPRELAQ----LIIDNLPPSSHVAKV----EIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           N F+       Q++  + +     TL +   ++VD+SSPN+A++
Sbjct: 88  NFFIDDNALATQLEQALNDEHFGITLPEPQTIVVDYSSPNLAKE 131


>gi|323493320|ref|ZP_08098443.1| arginyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323312406|gb|EGA65547.1| arginyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 577

 Score =  243 bits (619), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 213/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLEGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +        ++  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQADAALADSRLGVAAEEQKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    D    S  +ADL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQDSGEVSMELADLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + D++    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQSGDEFCGEMWKKLVDITMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L++K L   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNHMLPGIVADLKQKELAVEDDGAQVVFLEEYKNKDGDPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 322 AKYRYEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPEEVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/350 (39%), Positives = 189/350 (54%), Gaps = 53/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    D    S  +ADL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQDSGEVSMELADLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DEDE F  +A   VV LQ  D    + W+ + D++    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEEFAVKARNYVVKLQSGDEFCGEMWKKLVDITMIQNQRNYDRLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKK----------------------------------GNLS 707
              GES Y   +  +V  L++K                                  G L 
Sbjct: 255 DVMGESMYNHMLPGIVADLKQKELAVEDDGAQVVFLEEYKNKDGDPMGVIIQKRDGGFLY 314

Query: 708 LT----------KKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T          ++LG   ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 315 TTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PEEVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   +L   E  +    VA   +K
Sbjct: 374 LGKDGKPFKTRAGGTVRLADLLDEAEERAAKLIESKN--PDLAADEKEKISTTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR++SI   AGI+ ++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVSSIFAKAGISMDN 481



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ +L   E  +    VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPDLAADEKEKISTTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R++SI   AGI+ ++L     +  + +  EKE AL   LL+ ++ +  V R+   H +C 
Sbjct: 467  RVSSIFAKAGISMDNL-----TGEIKVTDEKEKALIAKLLQFDEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    TV   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILNTEDE----TVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLEGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +        ++  ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQADAALADSRLGVAAEEQKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|71754737|ref|XP_828283.1| arginyl-tRNA synthetase [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|70833669|gb|EAN79171.1| arginyl-tRNA synthetase, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 692

 Score =  243 bits (619), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 127/306 (41%), Positives = 188/306 (61%), Gaps = 17/306 (5%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE--KKNP 268
           L ++   A++ AFP +      +       + K  ++QCN+AM L K+        K +P
Sbjct: 14  LKEIVHRAIKRAFPSINPPEILIT------LGKTTEYQCNNAMGLVKLLSSASPPIKTSP 67

Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPP 328
                   ++V  EL  N     +I+  E    GF+N+ +  ++    +  ++  G++PP
Sbjct: 68  --------ALVGEELKKNLEENDMIESFEPTPQGFINITIKPMWVAGTVGKVLREGIRPP 119

Query: 329 TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388
            L K+ +VLVDFSSPNIAKEMHVGHLRSTIIG+ I RL E+  ++V R+NH+GDWGT FG
Sbjct: 120 NLPKQ-KVLVDFSSPNIAKEMHVGHLRSTIIGEAICRLFEFCQYEVHRINHIGDWGTAFG 178

Query: 389 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
           MLI  L+ K P++  + P I+DL  FY+E+KK FDED  FK++A   VV LQ  + +  K
Sbjct: 179 MLILFLRRKHPNFTEEVPNISDLTTFYREAKKCFDEDAEFKEQARLQVVKLQALEEESMK 238

Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWG 508
           AW++ICD+SR++F +IY+RLNVT+ ERGESFY   + +++  L++ G L   +G KI   
Sbjct: 239 AWKIICDISRKEFLQIYERLNVTIEERGESFYNPLIPEVLKLLDEAGKLVESNGAKITVL 298

Query: 509 EDRGSI 514
            D+ SI
Sbjct: 299 SDKKSI 304



 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 108/155 (69%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+ I RL E+  ++V R+NH+GDWGT FGMLI  L+ K P++  + P I+DL  FY
Sbjct: 146 STIIGEAICRLFEFCQYEVHRINHIGDWGTAFGMLILFLRRKHPNFTEEVPNISDLTTFY 205

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK FDED  FK++A   VV LQ  + +  KAW++ICD+SR++F +IY+RLNVT+ ER
Sbjct: 206 REAKKCFDEDAEFKEQARLQVVKLQALEEESMKAWKIICDISRKEFLQIYERLNVTIEER 265

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTD 719
           GESFY   + +++  L++ G L  +    I  ++D
Sbjct: 266 GESFYNPLIPEVLKLLDEAGKLVESNGAKITVLSD 300



 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 104/189 (55%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            R  L++ +  +R    T  ++ E  + +  G +KY DL  +R  DY FS++KMLD  GNT
Sbjct: 515  RAILEEREKGDRAQGHTKEDIDELSKKIGIGAVKYFDLKQSRLNDYAFSYEKMLDLSGNT 574

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            AV+LLY Y R+ SI R  G++ E       S+ V +E  +E  LA  +LRM+ V++    
Sbjct: 575  AVFLLYQYARLCSIERKCGVDREQF----LSSEVVIETPQEKKLALCVLRMDSVVIRTVD 630

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
            DL LHHL ++ Y++ + FS+F+ NC  I  + +         RL L E T   +K+  DI
Sbjct: 631  DLLLHHLTDFAYELVSCFSDFFQNCKVIGHEQQ-------NSRLCLVELTRLTLKQVLDI 683

Query: 1111 LNIRTVHKM 1119
            LNI    K+
Sbjct: 684  LNIDVAEKI 692



 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 5/153 (3%)

Query: 714 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 773
           +VY TD+GQ  H R+  + AK  G ++  +      GFG+V G D KK KTRSG++ KL 
Sbjct: 447 VVYCTDVGQYEHLRMCADLAKDMGWMD--RGTWSHAGFGLVTGADGKKIKTRSGESAKLK 504

Query: 774 ELLDEGLRRS---LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830
           +LLDE + RS   L++ +  +R    T  ++ E  + +  G +KY DL  +R  DY FS+
Sbjct: 505 DLLDEAVERSRAILEEREKGDRAQGHTKEDIDELSKKIGIGAVKYFDLKQSRLNDYAFSY 564

Query: 831 DKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           +KMLD  GNTAV+LLY Y R+ SI R  G++ E
Sbjct: 565 EKMLDLSGNTAVFLLYQYARLCSIERKCGVDRE 597



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 17/140 (12%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE--KKNP 72
           L ++   A++ AFP +      +       + K  ++QCN+AM L K+        K +P
Sbjct: 14  LKEIVHRAIKRAFPSINPPEILIT------LGKTTEYQCNNAMGLVKLLSSASPPIKTSP 67

Query: 73  FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPP 132
                   ++V  EL  N     +I+  E    GF+N+ +  ++    +  ++  G++PP
Sbjct: 68  --------ALVGEELKKNLEENDMIESFEPTPQGFINITIKPMWVAGTVGKVLREGIRPP 119

Query: 133 TLNKKLRVLVDFSSPNIARK 152
            L K+ +VLVDFSSPNIA++
Sbjct: 120 NLPKQ-KVLVDFSSPNIAKE 138



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 36/51 (70%)

Query: 511 RGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           R S P+ IVKSDGG+TYDT+D+A +  R   EK D +VY TD+GQ  H R+
Sbjct: 411 RFSFPLMIVKSDGGYTYDTTDVATMYHRFVLEKMDRVVYCTDVGQYEHLRM 461


>gi|383936969|ref|ZP_09990385.1| arginyl-tRNA synthetase [Rheinheimera nanhaiensis E407-8]
 gi|383701950|dbj|GAB60476.1| arginyl-tRNA synthetase [Rheinheimera nanhaiensis E407-8]
          Length = 579

 Score =  243 bits (619), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 150/397 (37%), Positives = 219/397 (55%), Gaps = 32/397 (8%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  + T   Q AF  LG    + A+       +FGD+Q N AMA  K+ K      NP  
Sbjct: 3   IKQLLTEKTQSAFVALGLPADTNAAVTVSTRPEFGDYQINGAMAAAKLLK-----TNPRQ 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPT 329
           +A+        +L    +LA +  K E+A PGF+NV L + +   Q++     N +    
Sbjct: 58  LAE--------QLVQQLNLAGIASKTEIAGPGFINVTLDKSWLAAQLQQATTDNRLGVSA 109

Query: 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
            N    V+VD+S+PN+AKEMHVGHLRSTIIGD + R LE+ G  V+R NH+GDWGTQFGM
Sbjct: 110 NNTPQTVVVDYSAPNLAKEMHVGHLRSTIIGDAVVRTLEFWGDKVIRQNHMGDWGTQFGM 169

Query: 390 LIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
           LIAHL+DK    +  +S  +ADL+ FY+E+KKRFD++  F  ++   VV LQ  D   +K
Sbjct: 170 LIAHLEDKLAAGIDLESVALADLEDFYREAKKRFDDEAGFADKSRDYVVKLQSGDAHCQK 229

Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
            W++  D S +  +++Y++LNVTL+    + ES Y   ++ +V  L+ K L   D G  +
Sbjct: 230 LWQLFIDTSVKHSEEVYEKLNVTLSHADIKPESAYNSMLQGIVDDLKAKELAVEDQGALV 289

Query: 506 MWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           ++ +   D+   P   +  K+ GGF Y T+DLAA + R  E  AD IV  TD  Q +HF+
Sbjct: 290 VFLQELADKEGNPSAFIVQKTGGGFLYSTTDLAACQYRSHELNADRIVIFTDARQALHFK 349

Query: 561 LLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            +E        ++R   YL  D    +H   +GT  G
Sbjct: 350 QVE-------LVARKAGYL-RDATTYDHC-PFGTMMG 377



 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 141/354 (39%), Positives = 200/354 (56%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD + R LE+ G  V+R NH+GDWGTQFGMLIAHL+DK    +  +S  
Sbjct: 133 HLR----STIIGDAVVRTLEFWGDKVIRQNHMGDWGTQFGMLIAHLEDKLAAGIDLESVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+E+KKRFD++  F  ++   VV LQ  D   +K W++  D S +  +++Y++
Sbjct: 189 LADLEDFYREAKKRFDDEAGFADKSRDYVVKLQSGDAHCQKLWQLFIDTSVKHSEEVYEK 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYL---------------------EKKGNLS--LTK 710
           LNVTL+    + ES Y   ++ +V  L                     +K+GN S  + +
Sbjct: 249 LNVTLSHADIKPESAYNSMLQGIVDDLKAKELAVEDQGALVVFLQELADKEGNPSAFIVQ 308

Query: 711 KLG------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRM 746
           K G                        IV  TD  Q +HF+ +E  A+KAG L  + T  
Sbjct: 309 KTGGGFLYSTTDLAACQYRSHELNADRIVIFTDARQALHFKQVELVARKAGYLR-DATTY 367

Query: 747 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ 806
           D   FG ++GED K FKTR+G TVKL+ELL+E + R+   +++K   ++L+  E++E  +
Sbjct: 368 DHCPFGTMMGEDGKPFKTRTGGTVKLAELLEEAVVRAKAVVQEK--ASDLSDNEIAEVAR 425

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            V  G +K+ADLS NR  DY+FS+D ML   G TA YL YAYTR+ SI R A I
Sbjct: 426 KVGIGAVKFADLSKNRTSDYIFSWDAMLSFEGATAPYLQYAYTRVRSILRRAEI 479



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + ++L+  E++E  + V  G +K+ADLS NR  DY+FS+D ML   G TA YL YAYT
Sbjct: 409  QEKASDLSDNEIAEVARKVGIGAVKFADLSKNRTSDYIFSWDAMLSFEGATAPYLQYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ SI R A I          S  + +E E+E  LA  LLR  + L  V +D   + LC 
Sbjct: 469  RVRSILRRAEI------AEGFSAALLIEQEQEKQLAVKLLRFEEALQQVMKDAQPNLLCN 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++++ +  FY+ C  ++   E    T    RL+L+  T+K++K+  D+L I  + +M
Sbjct: 523  YLYELASLYMAFYEACPILKDGVE---PTQRDSRLMLSIFTSKLLKQGLDLLGIEVMERM 579



 Score = 63.5 bits (153), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 14/139 (10%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  + T   Q AF  LG    + A+       +FGD+Q N AMA  K+      K NP  
Sbjct: 3   IKQLLTEKTQSAFVALGLPADTNAAVTVSTRPEFGDYQINGAMAAAKLL-----KTNPRQ 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPT 133
           +A+        +L    +LA +  K E A PGF+NV L + +   Q++     N +    
Sbjct: 58  LAE--------QLVQQLNLAGIASKTEIAGPGFINVTLDKSWLAAQLQQATTDNRLGVSA 109

Query: 134 LNKKLRVLVDFSSPNIARK 152
            N    V+VD+S+PN+A++
Sbjct: 110 NNTPQTVVVDYSAPNLAKE 128


>gi|190149308|ref|YP_001967833.1| arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|303250518|ref|ZP_07336715.1| arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|303251862|ref|ZP_07338033.1| arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307244840|ref|ZP_07526939.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307247015|ref|ZP_07529069.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307249238|ref|ZP_07531235.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|307251560|ref|ZP_07533467.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307253794|ref|ZP_07535648.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307256060|ref|ZP_07537848.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307258250|ref|ZP_07539993.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|307260491|ref|ZP_07542185.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|307262621|ref|ZP_07544251.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189914439|gb|ACE60691.1| arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|302649292|gb|EFL79477.1| arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|302650506|gb|EFL80665.1| arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306854285|gb|EFM86491.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306856467|gb|EFM88616.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306858762|gb|EFM90821.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306861024|gb|EFM93030.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306863278|gb|EFM95218.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306865482|gb|EFM97377.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306867710|gb|EFM99555.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306869803|gb|EFN01586.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306872044|gb|EFN03758.1| Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 575

 Score =  243 bits (619), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 136/329 (41%), Positives = 200/329 (60%), Gaps = 28/329 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K         NP + AQ I          N  L  + DK+E+A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NADLNGIADKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII--VN-GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL++ +   Q  + +  VN G++  T N +  +++D+SSPN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLNQAWLANQASEALQAVNFGIK--TANPQ-TIVIDYSSPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K
Sbjct: 139 GDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMELSDLEAFYRAAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
           + +D DE+F ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTL+E+   G
Sbjct: 198 EHYDSDEVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLSEKDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   + ++V  L+ KGL   DDG  +++ E   ++   PM ++  K DGGF Y T+D
Sbjct: 258 ESLYNPMLPEIVADLKAKGLAVEDDGALVVFLEEFKNKDGDPMGVIVQKKDGGFLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +AA + R E   AD ++  +D  Q  H +
Sbjct: 318 IAAAKYRYETLNADRVLVFSDSRQAQHMQ 346



 Score =  226 bits (575), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 141/354 (39%), Positives = 195/354 (55%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D DE+F ++A   VV LQ  D   +  W+ + D++    Q+ YDRL
Sbjct: 187 SDLEAFYRAAKEHYDSDEVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTL+E+   GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLSEKDVMGESLYNPMLPEIVADLKAKGLAVEDDGALVVFLEEFKNKDGDPMGVIVQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++  +D  Q  H +      +KAG + P    ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLNADRVLVFSDSRQAQHMQQAWLITRKAGYV-PESFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKL +LLDE + R+ DKL  + R T+LT  E +   +A
Sbjct: 366 HPFFGMMLGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLISE-RSTDLTAEEKAAVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           VA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   AGI+
Sbjct: 424 VAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFNRAGID 477



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 106/178 (59%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T+LT  E +   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RSTDLTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   AGI+   L     +  ++L  +KE ALA  LL+  + L  V +D   + LC+YL
Sbjct: 468  RSIFNRAGIDVNGL-----NGEINLTEDKERALAVKLLQFEEALNGVAKDGMPNILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++ AFS FY+ C  +  +     + V   RL LA  TAK +K+  D+L I+T+ KM
Sbjct: 523  YELAGAFSSFYEACPMLNAE-----ENVKNSRLSLAALTAKTLKQGLDLLGIKTIEKM 575



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 21/121 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K         NP + AQ I          N  L  + DK+E A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NADLNGIADKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII--VN-GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           F+N+FL++ +   Q  + +  VN G++  T N +  +++D+SSPN+A++      HL S 
Sbjct: 82  FINIFLNQAWLANQASEALQAVNFGIK--TANPQ-TIVIDYSSPNVAKE--MHVGHLRST 136

Query: 164 I 164
           I
Sbjct: 137 I 137


>gi|386285072|ref|ZP_10062290.1| arginyl-tRNA synthetase [Sulfurovum sp. AR]
 gi|385343925|gb|EIF50643.1| arginyl-tRNA synthetase [Sulfurovum sp. AR]
          Length = 565

 Score =  242 bits (618), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 139/356 (39%), Positives = 209/356 (58%), Gaps = 26/356 (7%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           L     + ++ AF + G +   ++ T E    +FGDFQ N AMAL K        KNP  
Sbjct: 3   LKQQINNVIKEAFTKAGIEHEPMSVT-EATKAEFGDFQFNGAMALAKPLG-----KNP-- 54

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQP 327
                  ++ +E+  N  L  +++K E+A PGF+N++L+  +   Q +    +   GV+ 
Sbjct: 55  ------RMIATEIIENLDLTGILEKAEIAGPGFINLWLNPSWLASQCESARKDSRLGVEK 108

Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
                 ++V+VD+S PN+AK+MHVGHLRS+IIGDT++ LL YLG DV+R NH+GDWGTQF
Sbjct: 109 R--ETPVKVVVDYSGPNMAKQMHVGHLRSSIIGDTLANLLTYLGDDVIRQNHIGDWGTQF 166

Query: 388 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           GMLIA+L++   +    S  + DL+ FYK++K RFDED+ F  +A + VV +Q  D    
Sbjct: 167 GMLIAYLEEIHEE---GSVSLKDLEQFYKDAKGRFDEDQAFADKAREYVVKIQSGDTHCL 223

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
             W+   D+S    +++Y++L V LT    R ESFY   +  ++  L++KGLL   DG +
Sbjct: 224 ALWQKFIDISLGHCEEVYEKLGVNLTREDVRAESFYNDDLHSVISDLDEKGLLTQSDGAQ 283

Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
            ++ E    +P+ + K DGG+ Y T+DLAA+R R +   A  I YV D  QG HF+
Sbjct: 284 CVFLEGE-EVPVIVQKGDGGYLYATTDLAALRYRAQTLGAQRISYVVDARQGEHFK 338



 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 190/336 (56%), Gaps = 51/336 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGDT++ LL YLG DV+R NH+GDWGTQFGMLIA+L++   +    S  + DL+ FY
Sbjct: 135 SSIIGDTLANLLTYLGDDVIRQNHIGDWGTQFGMLIAYLEEIHEE---GSVSLKDLEQFY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           K++K RFDED+ F  +A + VV +Q  D      W+   D+S    +++Y++L V LT  
Sbjct: 192 KDAKGRFDEDQAFADKAREYVVKIQSGDTHCLALWQKFIDISLGHCEEVYEKLGVNLTRE 251

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLT-------------------------------- 709
             R ESFY   +  ++  L++KG L+ +                                
Sbjct: 252 DVRAESFYNDDLHSVISDLDEKGLLTQSDGAQCVFLEGEEVPVIVQKGDGGYLYATTDLA 311

Query: 710 ------KKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 760
                 + LG   I YV D  QG HF+ +   AK+AG + P   +++ + FG ++G+D K
Sbjct: 312 ALRYRAQTLGAQRISYVVDARQGEHFKQVFRVAKEAGFV-PEDVKLEHIAFGTMMGQDGK 370

Query: 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH 820
            FKTR G TVKL ELLDE + ++ + + DK  ++E    EL    + +  G +KYADLS 
Sbjct: 371 PFKTREGGTVKLIELLDEAVAKAKETINDKENYSE---GELERLAKIIGIGAVKYADLSI 427

Query: 821 NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           NR  +Y+F++DKML   GNT++Y+ YAY RI SI R
Sbjct: 428 NRESNYIFNWDKMLSFEGNTSLYMQYAYARIQSIFR 463



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 16/189 (8%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            ++ + + DK  ++E    EL    + +  G +KYADLS NR  +Y+F++DKML   GNT+
Sbjct: 392  KAKETINDKENYSE---GELERLAKIIGIGAVKYADLSINRESNYIFNWDKMLSFEGNTS 448

Query: 992  VYLLYAYTRIASIARTA-GINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            +Y+ YAY RI SI R   G    D+ +       +LEH     L+  LLR  DVL     
Sbjct: 449  LYMQYAYARIQSIFRKYDGPMEGDIIIGD-----ALEHR----LSTMLLRFEDVLDRAAV 499

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
            D   + +  YLY+++T F  FY+    ++   EG  +     RLLLA+ TAK +K+  DI
Sbjct: 500  DAAPNQITTYLYELATLFMRFYEQNPILK---EGVDEVTKMSRLLLADLTAKTIKQGLDI 556

Query: 1111 LNIRTVHKM 1119
            L I TV K+
Sbjct: 557  LGIETVDKL 565



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 21/153 (13%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           L     + ++ AF + G +   ++ T E    +FGDFQ N AMAL K        KNP  
Sbjct: 3   LKQQINNVIKEAFTKAGIEHEPMSVT-EATKAEFGDFQFNGAMALAKPLG-----KNP-- 54

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQP 131
                  ++ +E+  N  L  +++K E A PGF+N++L+  +   Q +    +   GV+ 
Sbjct: 55  ------RMIATEIIENLDLTGILEKAEIAGPGFINLWLNPSWLASQCESARKDSRLGVEK 108

Query: 132 PTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                 ++V+VD+S PN+A++      HL S I
Sbjct: 109 R--ETPVKVVVDYSGPNMAKQ--MHVGHLRSSI 137


>gi|53729104|ref|ZP_00134063.2| COG0018: Arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 575

 Score =  242 bits (618), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 136/329 (41%), Positives = 200/329 (60%), Gaps = 28/329 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K         NP + AQ I          N  L  + DK+E+A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NADLNGIADKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII--VN-GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL++ +   Q  + +  VN G++  T N +  +++D+SSPN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLNQAWLANQASEALQAVNFGIK--TANPQ-TIVIDYSSPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K
Sbjct: 139 GDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMELSDLEAFYRAAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
           + +D DE+F ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTL+E+   G
Sbjct: 198 EHYDSDEVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLSEKDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   + ++V  L+ KGL   DDG  +++ E   ++   PM ++  K DGGF Y T+D
Sbjct: 258 ESLYNPMLPEIVADLKAKGLAVEDDGALVVFLEEFKNKDGDPMGVIVQKKDGGFLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +AA + R E   AD ++  +D  Q  H +
Sbjct: 318 IAAAKYRYETLNADRVLVFSDSRQAQHMQ 346



 Score =  226 bits (575), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 141/354 (39%), Positives = 195/354 (55%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D DE+F ++A   VV LQ  D   +  W+ + D++    Q+ YDRL
Sbjct: 187 SDLEAFYRAAKEHYDSDEVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTL+E+   GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLSEKDVMGESLYNPMLPEIVADLKAKGLAVEDDGALVVFLEEFKNKDGDPMGVIVQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++  +D  Q  H +      +KAG + P    ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLNADRVLVFSDSRQAQHMQQAWLITRKAGYV-PESFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKL +LLDE + R+ DKL  + R T+LT  E +   +A
Sbjct: 366 HPFFGMMLGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLISE-RSTDLTAEEKAAVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           VA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   AGI+
Sbjct: 424 VAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFNRAGID 477



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 106/178 (59%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T+LT  E +   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RSTDLTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   AGI+   L     +  ++L  +KE ALA  LL+  + L  V +D   + LC+YL
Sbjct: 468  RSIFNRAGIDVNGL-----NGEINLTEDKERALAVKLLQFEEALNGVAKDGMPNILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++ AFS FY+ C  +  +     + V   RL LA  TAK +K+  D+L I+T+ KM
Sbjct: 523  YELAGAFSSFYEACPMLNAE-----ENVKNSRLSLAALTAKTLKQGLDLLGIKTIEKM 575



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 21/121 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K         NP + AQ I          N  L  + DK+E A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NADLNGIADKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII--VN-GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           F+N+FL++ +   Q  + +  VN G++  T N +  +++D+SSPN+A++      HL S 
Sbjct: 82  FINIFLNQAWLANQASEALQAVNFGIK--TANPQ-TIVIDYSSPNVAKE--MHVGHLRST 136

Query: 164 I 164
           I
Sbjct: 137 I 137


>gi|261334106|emb|CBH17100.1| arginyl-tRNA synthetase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 692

 Score =  242 bits (618), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 127/306 (41%), Positives = 188/306 (61%), Gaps = 17/306 (5%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE--KKNP 268
           L ++   A++ AFP +      +       + K  ++QCN+AM L K+        K +P
Sbjct: 14  LKEIVHRAIKRAFPSINPPEILIT------LGKTTEYQCNNAMGLVKLLSSASPPIKTSP 67

Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPP 328
                   ++V  EL  N     +I+  E    GF+N+ +  ++    +  ++  G++PP
Sbjct: 68  --------ALVGEELKKNLEENDMIESFEPTPQGFINITIKPMWVAGTVGKVLREGIRPP 119

Query: 329 TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388
            L K+ +VLVDFSSPNIAKEMHVGHLRSTIIG+ I RL E+  ++V R+NH+GDWGT FG
Sbjct: 120 NLPKQ-KVLVDFSSPNIAKEMHVGHLRSTIIGEAICRLFEFCQYEVHRINHIGDWGTAFG 178

Query: 389 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
           MLI  L+ K P++  + P I+DL  FY+E+KK FDED  FK++A   VV LQ  + +  K
Sbjct: 179 MLILFLRRKHPNFTEEVPNISDLTTFYREAKKCFDEDAEFKEQARLQVVKLQALEEESMK 238

Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWG 508
           AW++ICD+SR++F +IY+RLNVT+ ERGESFY   + +++  L++ G L   +G KI   
Sbjct: 239 AWKIICDISRKEFLQIYERLNVTIEERGESFYNPLIPEVLKLLDEAGKLVESNGAKITVL 298

Query: 509 EDRGSI 514
            D+ SI
Sbjct: 299 SDKKSI 304



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 108/155 (69%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+ I RL E+  ++V R+NH+GDWGT FGMLI  L+ K P++  + P I+DL  FY
Sbjct: 146 STIIGEAICRLFEFCQYEVHRINHIGDWGTAFGMLILFLRRKHPNFTEEVPNISDLTTFY 205

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK FDED  FK++A   VV LQ  + +  KAW++ICD+SR++F +IY+RLNVT+ ER
Sbjct: 206 REAKKCFDEDAEFKEQARLQVVKLQALEEESMKAWKIICDISRKEFLQIYERLNVTIEER 265

Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTD 719
           GESFY   + +++  L++ G L  +    I  ++D
Sbjct: 266 GESFYNPLIPEVLKLLDEAGKLVESNGAKITVLSD 300



 Score =  123 bits (308), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 104/189 (55%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            R  L++ +  +R    T  ++ E  + +  G +KY DL  +R  DY FS++KMLD  GNT
Sbjct: 515  RAILEEREKGDRAQGHTKEDIDELSKKIGIGAVKYFDLKQSRLNDYAFSYEKMLDLSGNT 574

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            AV+LLY Y R+ SI R  G++ E       S+ V +E  +E  LA  +LRM+ V++    
Sbjct: 575  AVFLLYQYARLCSIERKCGVDREQF----LSSEVVIETPQEKKLALCVLRMDSVVIRTVD 630

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
            DL LHHL ++ Y++ + FS+F+ NC  I  + +         RL L E T   +K+  DI
Sbjct: 631  DLLLHHLTDFAYELVSCFSDFFQNCKVIGHEQQ-------NSRLCLVELTRLTLKQVLDI 683

Query: 1111 LNIRTVHKM 1119
            LNI    K+
Sbjct: 684  LNIDVAEKI 692



 Score =  123 bits (308), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 93/153 (60%), Gaps = 5/153 (3%)

Query: 714 IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLS 773
           +VY TD+GQ  H R+  + AK  G ++  K      GFG+V G D KK KTRSG++ KL 
Sbjct: 447 VVYCTDVGQYEHLRMCADLAKDMGWMD--KGTWSHAGFGLVTGADGKKIKTRSGESAKLK 504

Query: 774 ELLDEGLRRS---LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830
           +LLDE + RS   L++ +  +R    T  ++ E  + +  G +KY DL  +R  DY FS+
Sbjct: 505 DLLDEAVERSRAILEEREKGDRAQGHTKEDIDELSKKIGIGAVKYFDLKQSRLNDYAFSY 564

Query: 831 DKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           +KMLD  GNTAV+LLY Y R+ SI R  G++ E
Sbjct: 565 EKMLDLSGNTAVFLLYQYARLCSIERKCGVDRE 597



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 17/140 (12%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE--KKNP 72
           L ++   A++ AFP +      +       + K  ++QCN+AM L K+        K +P
Sbjct: 14  LKEIVHRAIKRAFPSINPPEILIT------LGKTTEYQCNNAMGLVKLLSSASPPIKTSP 67

Query: 73  FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPP 132
                   ++V  EL  N     +I+  E    GF+N+ +  ++    +  ++  G++PP
Sbjct: 68  --------ALVGEELKKNLEENDMIESFEPTPQGFINITIKPMWVAGTVGKVLREGIRPP 119

Query: 133 TLNKKLRVLVDFSSPNIARK 152
            L K+ +VLVDFSSPNIA++
Sbjct: 120 NLPKQ-KVLVDFSSPNIAKE 138



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 36/51 (70%)

Query: 511 RGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           R S P+ IVKSDGG+TYDT+D+A +  R   EK D +VY TD+GQ  H R+
Sbjct: 411 RFSFPLMIVKSDGGYTYDTTDVATMYHRFVLEKMDRVVYCTDVGQYEHLRM 461


>gi|126207527|ref|YP_001052752.1| arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
 gi|165975497|ref|YP_001651090.1| arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|126096319|gb|ABN73147.1| arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
 gi|165875598|gb|ABY68646.1| arginyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 548

 Score =  242 bits (618), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 136/329 (41%), Positives = 200/329 (60%), Gaps = 28/329 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K         NP + AQ I          N  L  + DK+E+A PG
Sbjct: 8   EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NADLNGIADKLEIAGPG 54

Query: 303 FVNVFLSRVYAGEQIKDII--VN-GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL++ +   Q  + +  VN G++  T N +  +++D+SSPN+AKEMHVGHLRSTII
Sbjct: 55  FINIFLNQAWLANQASEALQAVNFGIK--TANPQ-TIVIDYSSPNVAKEMHVGHLRSTII 111

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K
Sbjct: 112 GDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMELSDLEAFYRAAK 170

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
           + +D DE+F ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTL+E+   G
Sbjct: 171 EHYDSDEVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLSEKDVMG 230

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   + ++V  L+ KGL   DDG  +++ E   ++   PM ++  K DGGF Y T+D
Sbjct: 231 ESLYNPMLPEIVADLKAKGLAVEDDGALVVFLEEFKNKDGDPMGVIVQKKDGGFLYTTTD 290

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +AA + R E   AD ++  +D  Q  H +
Sbjct: 291 IAAAKYRYETLNADRVLVFSDSRQAQHMQ 319



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/347 (40%), Positives = 193/347 (55%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 108 STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMELSDLEAFY 166

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+ +D DE+F ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTL+E+
Sbjct: 167 RAAKEHYDSDEVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLSEK 226

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + ++V  L+ KG                         + + KK G    
Sbjct: 227 DVMGESLYNPMLPEIVADLKAKGLAVEDDGALVVFLEEFKNKDGDPMGVIVQKKDGGFLY 286

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++  +D  Q  H +      +KAG + P    ++   FG++
Sbjct: 287 TTTDIAAAKYRYETLNADRVLVFSDSRQAQHMQQAWLITRKAGYV-PESFSLEHPFFGMM 345

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TVKL +LLDE + R+ DKL  + R T+LT  E +   +AVA G +K
Sbjct: 346 LGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLISE-RSTDLTAEEKAAVVEAVAIGSVK 403

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           Y+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   AGI+
Sbjct: 404 YSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFNRAGID 450



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 106/178 (59%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T+LT  E +   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 381  RSTDLTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 440

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   AGI+   L     +  ++L  +KE ALA  LL+  + L  V +D   + LC+YL
Sbjct: 441  RSIFNRAGIDVNGL-----NGEINLTEDKERALAVKLLQFEEALNGVAKDGMPNILCQYL 495

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++ AFS FY+ C  +  +     + V   RL LA  TAK +K+  D+L I+T+ KM
Sbjct: 496  YELAGAFSSFYEACPMLNAE-----ENVKNSRLSLAALTAKTLKQGLDLLGIKTIEKM 548



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 21/121 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K         NP + AQ I          N  L  + DK+E A PG
Sbjct: 8   EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NADLNGIADKLEIAGPG 54

Query: 107 FVNVFLSRVYAGEQMKDII--VN-GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           F+N+FL++ +   Q  + +  VN G++  T N +  +++D+SSPN+A++      HL S 
Sbjct: 55  FINIFLNQAWLANQASEALQAVNFGIK--TANPQ-TIVIDYSSPNVAKE--MHVGHLRST 109

Query: 164 I 164
           I
Sbjct: 110 I 110


>gi|336123667|ref|YP_004565715.1| arginyl-tRNa synthetase [Vibrio anguillarum 775]
 gi|335341390|gb|AEH32673.1| Arginyl-tRNA synthetase [Vibrio anguillarum 775]
          Length = 588

 Score =  242 bits (618), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 216/387 (55%), Gaps = 35/387 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 45  QFGDYQANGIMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 91

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +     T   +  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 92  FINIFLSEAFLAKQADIALADEHLGVTKEAQKTIVADYSAPNVAKEMHVGHLRSTIIGDA 151

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK-SPPIADLQAFYKESKKR 421
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +   + S  ++DL+AFY+ESKK 
Sbjct: 152 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGNEVSMELSDLEAFYRESKKL 211

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           +DEDE+F  +A   VV LQ  D    + W+ + D++    Q+ YDRLNV+LT     GES
Sbjct: 212 YDEDEVFAAKARNYVVKLQSGDEFCAQMWKKLVDITMIQNQRNYDRLNVSLTRDDVMGES 271

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLA 533
            Y   +  +V  L++KGL + DDG ++++ E+   +   PM ++  K DGGF Y T+D+A
Sbjct: 272 MYNDMLPGIVADLKEKGLAQEDDGAQVVFLEEYKNKDGEPMGVIIQKRDGGFLYTTTDIA 331

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
             + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H     
Sbjct: 332 CAKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPDEVTLEHHA---- 380

Query: 594 TQFGMLIAHLQDKFPDYLTKSPPIADL 620
             FGM++      F      +  +ADL
Sbjct: 381 --FGMMLGKDGRPFKTRAGGTVRLADL 405



 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 132/351 (37%), Positives = 191/351 (54%), Gaps = 54/351 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK-SPPIADLQAF 623
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +   + S  ++DL+AF
Sbjct: 145 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGNEVSMELSDLEAF 204

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ESKK +DEDE+F  +A   VV LQ  D    + W+ + D++    Q+ YDRLNV+LT 
Sbjct: 205 YRESKKLYDEDEVFAAKARNYVVKLQSGDEFCAQMWKKLVDITMIQNQRNYDRLNVSLTR 264

Query: 684 ---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG--- 713
               GES Y   +  +V  L++KG                         + + K+ G   
Sbjct: 265 DDVMGESMYNDMLPGIVADLKEKGLAQEDDGAQVVFLEEYKNKDGEPMGVIIQKRDGGFL 324

Query: 714 --------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                               ++Y  D  Q  H        +KAG + P++  ++   FG+
Sbjct: 325 YTTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PDEVTLEHHAFGM 383

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           +LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   +L   E +     VA   +
Sbjct: 384 MLGKDGRPFKTRAGGTVRLADLLDEAQERAAKLIESKN--PDLDAAEKANIANTVAMAAV 441

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG++ ++
Sbjct: 442 KYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGVSMDN 492



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ +L   E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 418  ESKNPDLDAAEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 477

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG++ ++L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 478  RVASIFAKAGVSMDNL-----TGEIKVTQEKEKALIAKLLQFEEAVQAVAREGQPHIMCS 532

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 533  YLFELAGQFSSFYEACPILVAEDE----SVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 588



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 45  QFGDYQANGIMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 91

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +     T   +  ++ D+S+PN+A++      HL S I
Sbjct: 92  FINIFLSEAFLAKQADIALADEHLGVTKEAQKTIVADYSAPNVAKE--MHVGHLRSTI 147


>gi|290977172|ref|XP_002671312.1| predicted protein [Naegleria gruberi]
 gi|284084880|gb|EFC38568.1| predicted protein [Naegleria gruberi]
          Length = 517

 Score =  242 bits (618), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 150/376 (39%), Positives = 208/376 (55%), Gaps = 81/376 (21%)

Query: 565 STIIGDTISRLLEYLGH-DVVRLNHVGDWGTQFGMLIAHLQDKFPDY---LTKSPP--IA 618
           STIIGD I R+LEY G  +V R+NHVGD+GTQFGML+A ++    D     T++PP  + 
Sbjct: 90  STIIGDCICRILEYDGRFEVERINHVGDFGTQFGMLLAFIERNSIDLEKLQTQNPPEQLE 149

Query: 619 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQR-FDPDYKKAWEMICDVSRRDFQKIYDRL 677
            ++ +YK+SKK FD D +FK  A+Q V+ALQ+  D    K W+ + + SR +F  IY+RL
Sbjct: 150 TVEKYYKDSKKLFDSDPLFKDLAHQKVIALQQGNDESIHKIWKYLLECSRYEFDSIYERL 209

Query: 678 NVTLTERGESFYQ----KHMEQLVPYLEKKGN---------------------------- 705
           +V L E+GES+Y+    K +E L P +++                               
Sbjct: 210 DVRLVEKGESYYRDFIPKTLEILNPLIQESNGAKCIFTEKEQETITEDQKEPPLMVQKAD 269

Query: 706 ----------------LSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNP-------- 741
                           L ++K   ++YVTD GQ  HF  + +  +    ++P        
Sbjct: 270 GGYTYDTTDLATLWYRLFVSKGKWLIYVTDFGQASHFNKVFKVGEMMKWIDPLENSRDLV 329

Query: 742 ----------NKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKN 791
                     +K R+D VGFGVVL E++KKF+TRSGDTVKL +LLDE ++RS + +K KN
Sbjct: 330 WSENATSLTSSKVRIDHVGFGVVLDEEKKKFRTRSGDTVKLHDLLDEAIKRSYEIIKLKN 389

Query: 792 RH--------TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 843
                     + LT  ++  A + V YG +KYADL  NR  +Y FSFDKMLD RGNTAVY
Sbjct: 390 DERCKENEEISSLTDEQIMAASKIVGYGAVKYADLRTNRTTNYTFSFDKMLDFRGNTAVY 449

Query: 844 LLYAYTRIASIARTAG 859
           LLYAY RI+SI   +G
Sbjct: 450 LLYAYARISSIIEKSG 465



 Score =  232 bits (592), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 146/395 (36%), Positives = 228/395 (57%), Gaps = 51/395 (12%)

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K++P D+A+S+   + +        +++++KI++   G +++ L   Y   +I +I    
Sbjct: 8   KQSPIDVAKSLGESILNN-------SEIVEKIDIINNGVISLSLCDEYVKRKISEIF--N 58

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGH-DVVRLNHVGDW 383
            QP  +  K+RV+VDFSSPN+AK MHVGHLRSTIIGD I R+LEY G  +V R+NHVGD+
Sbjct: 59  QQPLNVKDKIRVIVDFSSPNMAKRMHVGHLRSTIIGDCICRILEYDGRFEVERINHVGDF 118

Query: 384 GTQFGMLIAHLQDKFPD---YLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           GTQFGML+A ++    D     T++PP  +  ++ +YK+SKK FD D +FK  A+Q V+A
Sbjct: 119 GTQFGMLLAFIERNSIDLEKLQTQNPPEQLETVEKYYKDSKKLFDSDPLFKDLAHQKVIA 178

Query: 439 LQR-FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLL 497
           LQ+  D    K W+ + + SR +F  IY+RL+V L E+GES+Y+  + + +  L    L+
Sbjct: 179 LQQGNDESIHKIWKYLLECSRYEFDSIYERLDVRLVEKGESYYRDFIPKTLEILNP--LI 236

Query: 498 ELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
           +  +G K ++         ED+   P+ + K+DGG+TYDT+DLA +  R+   K  W++Y
Sbjct: 237 QESNGAKCIFTEKEQETITEDQKEPPLMVQKADGGYTYDTTDLATLWYRLFVSKGKWLIY 296

Query: 550 VTDLGQGVHFRLLEESTIIGDTI--------SRLLEY------LGHDVVRLNHVGDWGTQ 595
           VTD GQ  HF  + +   +G+ +        SR L +      L    VR++HVG     
Sbjct: 297 VTDFGQASHFNKVFK---VGEMMKWIDPLENSRDLVWSENATSLTSSKVRIDHVG----- 348

Query: 596 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           FG+++   + KF    T+S     L     E+ KR
Sbjct: 349 FGVVLDEEKKKFR---TRSGDTVKLHDLLDEAIKR 380



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 51/75 (68%)

Query: 935  DKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYL 994
            ++ K+    + LT  ++  A + V YG +KYADL  NR  +Y FSFDKMLD RGNTAVYL
Sbjct: 391  ERCKENEEISSLTDEQIMAASKIVGYGAVKYADLRTNRTTNYTFSFDKMLDFRGNTAVYL 450

Query: 995  LYAYTRIASIARTAG 1009
            LYAY RI+SI   +G
Sbjct: 451  LYAYARISSIIEKSG 465



 Score = 48.1 bits (113), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 9/84 (10%)

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K++P D+A+S+   + +        +++++KI+    G +++ L   Y   ++ +I    
Sbjct: 8   KQSPIDVAKSLGESILNN-------SEIVEKIDIINNGVISLSLCDEYVKRKISEIF--N 58

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
            QP  +  K+RV+VDFSSPN+A++
Sbjct: 59  QQPLNVKDKIRVIVDFSSPNMAKR 82


>gi|397685652|ref|YP_006522971.1| arginyl-tRNA ligase [Pseudomonas stutzeri DSM 10701]
 gi|395807208|gb|AFN76613.1| arginyl-tRNA ligase [Pseudomonas stutzeri DSM 10701]
          Length = 579

 Score =  242 bits (618), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 158/409 (38%), Positives = 224/409 (54%), Gaps = 59/409 (14%)

Query: 203 DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 262
           DR++    L +    A+QV             +T +K     GDF  N AM L K    K
Sbjct: 14  DRLTAEGVLPEGLAPAIQVE------------NTRDK---SHGDFASNIAMMLAKPAGMK 58

Query: 263 GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQ 316
                P D+AQ +   +       P  A+V  K+E+A PGF+N F        R+ A   
Sbjct: 59  -----PRDLAQKLIEAL-------PQDAQV-SKVEIAGPGFLNFFQNTDALAGRLEAALA 105

Query: 317 IKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 376
              + V     P      RV++D SSPN+AKEMHVGHLRSTIIGD + R+LE+LG +V+R
Sbjct: 106 DSQLSVRKAGAPQ-----RVVIDLSSPNLAKEMHVGHLRSTIIGDAVGRVLEFLGDEVIR 160

Query: 377 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 436
            NHVGDWGTQFGML+A+L++K     T+   +ADL+ FY+ +K+RFDE   F  RA + V
Sbjct: 161 QNHVGDWGTQFGMLLAYLEEKPAAAETE---LADLEQFYRAAKQRFDESGEFADRARELV 217

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEK 493
           V LQ  D D  + W    D+S    QKIYDRLNV LT    +GES Y   +  +V  L  
Sbjct: 218 VKLQAGDADCLRLWTRFNDISLSHCQKIYDRLNVKLTPTDVKGESAYNAELSGIVDALRD 277

Query: 494 KGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIV 548
           KGLL  D+G + ++ E     +   +P+ + K+ GG+ Y T+DLAA+R R +  +AD ++
Sbjct: 278 KGLLTEDNGAQCVFLEEFKNAEGNPLPVIVQKAGGGYLYATTDLAAMRYRSQALQADRVL 337

Query: 549 YVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
           Y  D  Q +HF++  E       ++R   ++ HD ++L H+G +GT  G
Sbjct: 338 YFVDQRQALHFQMAFE-------VARRAGFV-HDGMQLEHMG-FGTMNG 377



 Score =  233 bits (594), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 201/362 (55%), Gaps = 56/362 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R+LE+LG +V+R NHVGDWGTQFGML+A+L++K     T+   +ADL+ FY
Sbjct: 140 STIIGDAVGRVLEFLGDEVIRQNHVGDWGTQFGMLLAYLEEKPAAAETE---LADLEQFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA + VV LQ  D D  + W    D+S    QKIYDRLNV LT  
Sbjct: 197 RAAKQRFDESGEFADRARELVVKLQAGDADCLRLWTRFNDISLSHCQKIYDRLNVKLTPT 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   +  +V  L  KG L+                       + +K G     
Sbjct: 257 DVKGESAYNAELSGIVDALRDKGLLTEDNGAQCVFLEEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF++  E A++AG ++ +  +++ +GFG +
Sbjct: 317 ATTDLAAMRYRSQALQADRVLYFVDQRQALHFQMAFEVARRAGFVH-DGMQLEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+ + +K+KN   +L   EL +  +AV    +K
Sbjct: 376 NGADGRPFKTRDGGTVKLVDLLDEAEQRAYNLVKEKN--PDLDEAELRQIARAVGISAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS +R  DY F+F+ ML   GNTA YLLYAYTR+AS+ R  G   ++   P   ++E
Sbjct: 434 YADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYTRVASVFRKLGKGIDEIDGPIQLEAE 493

Query: 875 VE 876
            E
Sbjct: 494 QE 495



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 11/173 (6%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+ + +K+KN   +L   EL +  +AV    +KYADLS +R  DY F+F+ ML   GNT
Sbjct: 402  QRAYNLVKEKN--PDLDEAELRQIARAVGISAVKYADLSKHRTSDYRFNFELMLSFEGNT 459

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYAYTR+AS+ R  G   +++       P+ LE E+E ALA  L +  + L  V  
Sbjct: 460  APYLLYAYTRVASVFRKLGKGIDEI-----DGPIQLEAEQELALAARLAQFGETLNNVGE 514

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
                H LC YLYD++  FS FY++C  +  + E + ++    RL LA  T K 
Sbjct: 515  KGEPHLLCSYLYDLAGLFSSFYEHCPILTAETEQQKQS----RLRLAALTGKT 563



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 45/155 (29%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           DR++    L +    A+QV             +T +K     GDF  N AM L K    K
Sbjct: 14  DRLTAEGVLPEGLAPAIQVE------------NTRDK---SHGDFASNIAMMLAKPAGMK 58

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
                P D+AQ +   +       P  A+V  K+E A PGF+N F        Q  D + 
Sbjct: 59  -----PRDLAQKLIEAL-------PQDAQV-SKVEIAGPGFLNFF--------QNTDALA 97

Query: 127 NGVQPPTLNKKL---------RVLVDFSSPNIARK 152
             ++    + +L         RV++D SSPN+A++
Sbjct: 98  GRLEAALADSQLSVRKAGAPQRVVIDLSSPNLAKE 132


>gi|254506840|ref|ZP_05118979.1| arginyl-tRNA synthetase [Vibrio parahaemolyticus 16]
 gi|219550125|gb|EED27111.1| arginyl-tRNA synthetase [Vibrio parahaemolyticus 16]
          Length = 605

 Score =  242 bits (618), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 214/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 63  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 109

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +        ++  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 110 FINIFLSEEFLAKQAESALADARLGVAKEEQQTIVADYSAPNVAKEMHVGHLRSTIIGDA 169

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 170 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKESGEVSMELSDLEAFYRESKKLY 229

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  RA   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 230 DEDEEFALRARNYVVKLQSGDEYCAEMWKKLVDVTMVQNQRNYDRLNVSLTRDDVMGESM 289

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L+++G+ + DDG ++++ E     D  ++ + I K DGGF Y T+D+A 
Sbjct: 290 YNDMLPGIVADLKERGIAQEDDGAQVVFLEEYKNKDGEAMGVIIQKRDGGFLYTTTDIAC 349

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   A+ ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 350 AKYRYETLGANRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPEEVSLEHHA----- 397

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 398 -FGMMLGKDGRPFKTRAGGTVRLADL 422



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/357 (37%), Positives = 191/357 (53%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 160 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKESGEVSMEL 215

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ESKK +DEDE F  RA   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 216 SDLEAFYRESKKLYDEDEEFALRARNYVVKLQSGDEYCAEMWKKLVDVTMVQNQRNYDRL 275

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   +  +V  L+++G                         + + K
Sbjct: 276 NVSLTRDDVMGESMYNDMLPGIVADLKERGIAQEDDGAQVVFLEEYKNKDGEAMGVIIQK 335

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P +  ++
Sbjct: 336 RDGGFLYTTTDIACAKYRYETLGANRVLYFIDSRQHQHLMQAWTIVRKAGYV-PEEVSLE 394

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D + FKTR+G TV+L++LLDE   R++  ++ KN   +L   E  +    
Sbjct: 395 HHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAEERAIKLIESKN--ADLDSEEKVKIANT 452

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR++SI   AGI+ ++
Sbjct: 453 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVSSIFAKAGISMDN 509



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 105/188 (55%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R++  ++ KN   +L   E  +    VA   +KYADLS +R  DYVF +D ML   GNTA
Sbjct: 429  RAIKLIESKN--ADLDSEEKVKIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTA 486

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR++SI   AGI+ ++L     +  + +  EKE AL   LL+  + +  V R+
Sbjct: 487  PYMQYAYTRVSSIFAKAGISMDNL-----AGEIKVTEEKEKALIAKLLQFEEAVQSVARE 541

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L
Sbjct: 542  GQPHIMCSYLFELAGQFSSFYEACPILNTEDE----SVKQSRLKLAALTAKTIKQGLSLL 597

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 598  GIETLERM 605



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 63  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 109

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +        ++  ++ D+S+PN+A++      HL S I
Sbjct: 110 FINIFLSEEFLAKQAESALADARLGVAKEEQQTIVADYSAPNVAKE--MHVGHLRSTI 165


>gi|322513913|ref|ZP_08066990.1| arginine--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322120248|gb|EFX92201.1| arginine--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 584

 Score =  242 bits (618), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 136/329 (41%), Positives = 201/329 (61%), Gaps = 28/329 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K         NP + AQ I          N  L  + DK+E+A PG
Sbjct: 44  EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NADLNGIADKLEIAGPG 90

Query: 303 FVNVFLSRVYAGEQIKDII--VN-GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL++ +   Q  + +  VN G++  T N +  +++D+SSPN+AKEMHVGHLRSTII
Sbjct: 91  FINIFLNQQWLASQASEALQAVNFGIK--TANPQ-TIVIDYSSPNVAKEMHVGHLRSTII 147

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K
Sbjct: 148 GDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMELSDLEAFYRAAK 206

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
           + +D DE+F ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTL+E+   G
Sbjct: 207 EHYDSDEVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLSEKDVMG 266

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   + ++V  L+ KGL   DDG  +++ E   ++   PM ++  K DGGF Y T+D
Sbjct: 267 ESLYNPMLPEIVADLKAKGLAVEDDGALVVFLEEFKNKDGDPMGVIVQKKDGGFLYTTTD 326

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +AA + R E   AD ++  +D  Q  H +
Sbjct: 327 IAAAKYRYETLNADRVLVFSDSRQAQHMQ 355



 Score =  229 bits (583), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 140/348 (40%), Positives = 195/348 (56%), Gaps = 54/348 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 144 STIIGDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMELSDLEAFY 202

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+ +D DE+F ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTL+E+
Sbjct: 203 RAAKEHYDSDEVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLSEK 262

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + ++V  L+ KG                         + + KK G    
Sbjct: 263 DVMGESLYNPMLPEIVADLKAKGLAVEDDGALVVFLEEFKNKDGDPMGVIVQKKDGGFLY 322

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++  +D  Q  H +      +KAG + P    ++   FG++
Sbjct: 323 TTTDIAAAKYRYETLNADRVLVFSDSRQAQHMQQAWLITRKAGYV-PESFSLEHPFFGMM 381

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TVKL +LLDE + R+ DKL  + R T+LT  E +   +AVA G +K
Sbjct: 382 LGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLISE-RSTDLTAEEKAAVVEAVAIGSVK 439

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           Y+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   AGIN+
Sbjct: 440 YSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFNRAGINA 487



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/178 (44%), Positives = 107/178 (60%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T+LT  E +   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 417  RSTDLTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 476

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   AGIN+  L     +  + L  +KE ALA  LL+  +VL  V +D   H LC+YL
Sbjct: 477  RSIFNRAGINANGL-----NGEIGLIEDKERALAVKLLQFEEVLNGVAKDGMPHILCQYL 531

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++ AFS FY+ C  +  +     + V   RL LA  TAK +K+  D+L I+T+ KM
Sbjct: 532  YELAGAFSSFYEACPMLNAE-----ENVKNSRLRLATLTAKTLKQGLDLLGIKTIEKM 584



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 21/121 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K         NP + AQ I          N  L  + DK+E A PG
Sbjct: 44  EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NADLNGIADKLEIAGPG 90

Query: 107 FVNVFLSRVYAGEQMKDII--VN-GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           F+N+FL++ +   Q  + +  VN G++  T N +  +++D+SSPN+A++      HL S 
Sbjct: 91  FINIFLNQQWLASQASEALQAVNFGIK--TANPQ-TIVIDYSSPNVAKE--MHVGHLRST 145

Query: 164 I 164
           I
Sbjct: 146 I 146


>gi|365539316|ref|ZP_09364491.1| arginyl-tRNA synthetase [Vibrio ordalii ATCC 33509]
          Length = 578

 Score =  242 bits (617), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 215/387 (55%), Gaps = 35/387 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGIMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +     T   +  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEAFLAKQADIALADEHLGVTKEAQKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK-SPPIADLQAFYKESKKR 421
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +   + S  ++DL+AFY+ESKK 
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGNEVSMELSDLEAFYRESKKL 201

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           +DEDE+F  +A   VV LQ  D    + W+ + D++    Q+ YDRLNV+LT     GES
Sbjct: 202 YDEDEVFAAKARNYVVKLQSGDEFCAQMWKKLVDITMIQNQRNYDRLNVSLTRDDVMGES 261

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLA 533
            Y   +  +V  L++KGL + DDG ++++ E   ++   PM ++  K DGGF Y T+D+A
Sbjct: 262 MYNDMLPGIVADLKEKGLAQEDDGAQVVFLEEYKNKDGEPMGVIIQKRDGGFLYTTTDIA 321

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
             + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H     
Sbjct: 322 CAKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPEKVTLEHHA---- 370

Query: 594 TQFGMLIAHLQDKFPDYLTKSPPIADL 620
             FGM++      F      +  +ADL
Sbjct: 371 --FGMMLGKDGRPFKTRAGGTVRLADL 395



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/351 (37%), Positives = 190/351 (54%), Gaps = 54/351 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK-SPPIADLQAF 623
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +   + S  ++DL+AF
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGNEVSMELSDLEAF 194

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ESKK +DEDE+F  +A   VV LQ  D    + W+ + D++    Q+ YDRLNV+LT 
Sbjct: 195 YRESKKLYDEDEVFAAKARNYVVKLQSGDEFCAQMWKKLVDITMIQNQRNYDRLNVSLTR 254

Query: 684 ---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG--- 713
               GES Y   +  +V  L++KG                         + + K+ G   
Sbjct: 255 DDVMGESMYNDMLPGIVADLKEKGLAQEDDGAQVVFLEEYKNKDGEPMGVIIQKRDGGFL 314

Query: 714 --------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                               ++Y  D  Q  H        +KAG + P K  ++   FG+
Sbjct: 315 YTTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PEKVTLEHHAFGM 373

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           +LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   +L   E +     VA   +
Sbjct: 374 MLGKDGRPFKTRAGGTVRLADLLDEAQERAAKLIESKN--PDLDAAEKANIANTVAMAAV 431

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG++ ++
Sbjct: 432 KYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGVSMDN 482



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ +L   E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 408  ESKNPDLDAAEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG++ ++L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 468  RVASIFAKAGVSMDNL-----TGEIKVTQEKEKALIAKLLQFEEAVQAVAREGQPHIMCS 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 523  YLFELAGQFSSFYEACPILVAEDE----SVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 578



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGIMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +     T   +  ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEAFLAKQADIALADEHLGVTKEAQKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|417825323|ref|ZP_12471911.1| arginyl-tRNA synthetase [Vibrio cholerae HE48]
 gi|340046808|gb|EGR07738.1| arginyl-tRNA synthetase [Vibrio cholerae HE48]
          Length = 577

 Score =  242 bits (617), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/430 (36%), Positives = 232/430 (53%), Gaps = 50/430 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  ++D  + A++ A    G    ++A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQALINDRVSQAIEAA----GAPAGTLALVRQSAKAQFGDYQANGIMGAAKQLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK----DI 320
             NP + AQ +  V+        +L  +  K E+A PGF+N+FLS  +   Q +    D+
Sbjct: 53  -TNPREFAQKVLDVL--------NLDGIASKTEIAGPGFINIFLSEEFLAAQAEAALADV 103

Query: 321 IVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            +   Q  P T      ++ D+S+PN+AKEMHVGHLRSTIIGD + R LE+LGH V+R N
Sbjct: 104 RLGVAQEAPKT------IVADYSAPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHKVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           H+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +DEDE F + A   VV 
Sbjct: 158 HIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLYDEDEQFAETARNYVVK 217

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES Y   + Q+V  L+ KG
Sbjct: 218 LQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESMYNDMLPQIVSDLKAKG 277

Query: 496 LLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L   DDG ++++ E   ++   PM ++  K DGGF Y T+D+A  + R E   AD ++Y 
Sbjct: 278 LAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIACAKYRYETLGADRVLYF 337

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q  H  L++  TI+     R   Y+  +V   +H       FGM++      F   
Sbjct: 338 IDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA------FGMMLGKDGRPFKTR 384

Query: 611 LTKSPPIADL 620
              +  +ADL
Sbjct: 385 AGGTVRLADL 394



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKANIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 478



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 577



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 31/162 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  ++D  + A++ A    G    ++A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQALINDRVSQAIEAA----GAPAGTLALVRQSAKAQFGDYQANGIMGAAKQLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLS----RVYAGEQMKDI 124
             NP + AQ +  V+        +L  +  K E A PGF+N+FLS       A   + D+
Sbjct: 53  -TNPREFAQKVLDVL--------NLDGIASKTEIAGPGFINIFLSEEFLAAQAEAALADV 103

Query: 125 IVNGVQ--PPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
            +   Q  P T      ++ D+S+PN+A++      HL S I
Sbjct: 104 RLGVAQEAPKT------IVADYSAPNVAKE--MHVGHLRSTI 137


>gi|269967949|ref|ZP_06181989.1| Arginyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269827472|gb|EEZ81766.1| Arginyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 577

 Score =  242 bits (617), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 214/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +       ++   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALADSRLGVAADEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEDFAVKARNYVVKLQSGDEYCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + ++V  L+++GL   DDG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKEQGLAVEDDGAQVVFLDEYKNKDGEPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELSADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/353 (38%), Positives = 187/353 (52%), Gaps = 57/353 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEDFAVKARNYVVKLQSGDEYCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   + ++V  L+++G                         + + K
Sbjct: 248 NVSLTRDDVMGESMYNDMLPKIVADLKEQGLAVEDDGAQVVFLDEYKNKDGEPMGVIVQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELSADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E  +  + 
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELDAEEKEKISKT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG+
Sbjct: 425 VAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGV 477



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E  +  + VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELDAEEKEKISKTVAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG+  + L+       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVAMDALQ-----GDIKITDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +       ++   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALADSRLGVAADEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|91228441|ref|ZP_01262366.1| arginyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91188025|gb|EAS74332.1| arginyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 577

 Score =  242 bits (617), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 214/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +       ++   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALADSRLGVAADEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEDFAVKARNYVVKLQSGDEYCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + ++V  L+++GL   DDG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKEQGLAVEDDGAQVVFLDEYKNKDGEPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELSADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/353 (38%), Positives = 187/353 (52%), Gaps = 57/353 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEDFAVKARNYVVKLQSGDEYCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   + ++V  L+++G                         + + K
Sbjct: 248 NVSLTRDDVMGESMYNDMLPKIVADLKEQGLAVEDDGAQVVFLDEYKNKDGEPMGVIVQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELSADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E  +  + 
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELDAEEKEKISKT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG+
Sbjct: 425 VAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGV 477



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E  +  + VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELDAEEKEKISKTVAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG+  + L+       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVAMDALQ-----GDIKITDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +       ++   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALADSRLGVAADEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|389586292|dbj|GAB69021.1| arginyl-tRNA synthetase [Plasmodium cynomolgi strain B]
          Length = 599

 Score =  242 bits (617), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 216/370 (58%), Gaps = 30/370 (8%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALC--------KIFKDK 262
           +  VF H++Q  FP + ++     +       KFG FQC  A A           IFK+ 
Sbjct: 8   IKQVFQHSIQKCFPSISEEVVVTYAN-----AKFGHFQCKRANACITYARNNAINIFKNH 62

Query: 263 GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR---------VYA 313
           G++ N  + AQ ++ ++   ++ N       ++I+ +  GF+ V LS+         +Y 
Sbjct: 63  GKELNV-ESAQKLSQMIIENISEN-----FFEEIKSSPQGFITVKLSKEYIEKSLLKLYK 116

Query: 314 GEQIK-DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGH 372
             +I+  + +N V+        +VLVDFSSPNIAKEMHVGHLRSTI+GD+I ++ E+L  
Sbjct: 117 NNKIEISVNINEVKGVNDGDYKKVLVDFSSPNIAKEMHVGHLRSTILGDSICKIFEFLNV 176

Query: 373 DVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRA 432
           + +R+NHVGDWGTQFGM+I ++   +P+Y    P + +L + Y+E+KK +D D+ F+K A
Sbjct: 177 ETLRVNHVGDWGTQFGMIINYIFSNYPNYKENMPDLTNLTSLYQEAKKMYDADKEFEKNA 236

Query: 433 YQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLE 492
               + LQ  D D    W+ +C+ S+++F K+Y  L++ L   GES+Y   +  ++  L+
Sbjct: 237 KNYAIKLQNNDEDCVFIWKKLCESSKKEFDKLYKILDINLEYVGESYYISMISSVLQMLK 296

Query: 493 KKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
            + LL  + G  I +  ++ ++P+ + KS+GGF YD++D+AA+  R+++  +D I+YVTD
Sbjct: 297 DEQLLT-NVGDAICYQSEKFNVPLFLQKSNGGFGYDSTDVAALHYRLKKLNSDCIIYVTD 355

Query: 553 LGQGVHFRLL 562
            GQ  HF  +
Sbjct: 356 NGQLSHFETI 365



 Score =  219 bits (558), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 124/347 (35%), Positives = 192/347 (55%), Gaps = 48/347 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STI+GD+I ++ E+L  + +R+NHVGDWGTQFGM+I ++   +P+Y    P + +L + Y
Sbjct: 160 STILGDSICKIFEFLNVETLRVNHVGDWGTQFGMIINYIFSNYPNYKENMPDLTNLTSLY 219

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +D D+ F+K A    + LQ  D D    W+ +C+ S+++F K+Y  L++ L   
Sbjct: 220 QEAKKMYDADKEFEKNAKNYAIKLQNNDEDCVFIWKKLCESSKKEFDKLYKILDINLEYV 279

Query: 685 GESFYQKHM---------EQL-------VPYLEKKGNLSL-------------------- 708
           GES+Y   +         EQL       + Y  +K N+ L                    
Sbjct: 280 GESYYISMISSVLQMLKDEQLLTNVGDAICYQSEKFNVPLFLQKSNGGFGYDSTDVAALH 339

Query: 709 --TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
              KKL    I+YVTD GQ  HF  + + AKKA      KT++  VGFG+VL  D KKFK
Sbjct: 340 YRLKKLNSDCIIYVTDNGQLSHFETIFDLAKKAK-WTSEKTKLVHVGFGLVLNADNKKFK 398

Query: 764 TRSGDTVKLSELLDEGLRRSLD------KLKDKNRHTELTPTELSEAQQAVAYGCIKYAD 817
           TRSG T+KL  L++EG  R+        +LK +   +     ++ +  + +    IKY D
Sbjct: 399 TRSGTTIKLINLINEGTERAKKDLLERIQLKSEEEKSYFKGIDIDQLSEQLCVSAIKYFD 458

Query: 818 LSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           +  +RN DY FS+D ML+ +GNT +Y++YAY+R+ SI R   ++ ++
Sbjct: 459 IKQHRNSDYKFSYDNMLNVKGNTGLYIIYAYSRMCSIFRKCSVDMDE 505



 Score =  102 bits (255), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 99/184 (53%), Gaps = 11/184 (5%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +LK +   +     ++ +  + +    IKY D+  +RN DY FS+D ML+ +GNT +Y++
Sbjct: 427  QLKSEEEKSYFKGIDIDQLSEQLCVSAIKYFDIKQHRNSDYKFSYDNMLNVKGNTGLYII 486

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YAY+R+ SI R   ++ ++L        ++L    E  L   +L+  DV   + +++ +H
Sbjct: 487  YAYSRMCSIFRKCSVDMDEL----SKDELNLVSPYEVNLGLHILKFPDVFYFILKNMLIH 542

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1115
             L EY Y+++T F+ FY+NC  +  + E   KT    RL+L      +++ C  +L +  
Sbjct: 543  KLAEYTYELTTIFTAFYENCKVLNSENE---KT----RLILCAIAKSLLQICLKLLGLNA 595

Query: 1116 VHKM 1119
            + K+
Sbjct: 596  IEKL 599



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 29/156 (18%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALC--------KIFKDK 66
           +  VF H++Q  FP + ++     +       KFG FQC  A A           IFK+ 
Sbjct: 8   IKQVFQHSIQKCFPSISEEVVVTYAN-----AKFGHFQCKRANACITYARNNAINIFKNH 62

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
           G++ N  + AQ ++ ++   ++ N       ++I+++  GF+ V LS+ Y  + +  +  
Sbjct: 63  GKELNV-ESAQKLSQMIIENISEN-----FFEEIKSSPQGFITVKLSKEYIEKSLLKLYK 116

Query: 127 NGVQPPTLNKK----------LRVLVDFSSPNIARK 152
           N     ++N             +VLVDFSSPNIA++
Sbjct: 117 NNKIEISVNINEVKGVNDGDYKKVLVDFSSPNIAKE 152


>gi|253989980|ref|YP_003041336.1| arginyl-tRNA synthetase [Photorhabdus asymbiotica]
 gi|211639039|emb|CAR67652.1| arginyl-trna synthetase (ec 6.1.1.19) (arginine--trna ligase)
           (argrs) [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253781430|emb|CAQ84593.1| arginyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 576

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 154/408 (37%), Positives = 220/408 (53%), Gaps = 45/408 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  +HA+  A    G  T S A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQAILSEKVSHALIAA----GAPTDSEAHIRQSAKSQFGDYQANGVMAAAKKVG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P  +A+ + S++         L  +  K+E+A PGF+N+FL + +    ++  + + 
Sbjct: 53  -MPPRQLAEKVVSLL--------DLQGIASKVEIAGPGFINIFLDKAWIAANVETALKDE 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
               T  K   ++VD+S+PN+AK+MHVGHLRSTIIGD   R LE+LGH V+R NHVGDWG
Sbjct: 104 KLGITPVKPQTIVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+ K  +       ++DL+AFY+E+KK +DEDE F  RA   VV LQ  D 
Sbjct: 164 TQFGMLIAYLE-KVQNENASDMALSDLEAFYREAKKNYDEDEEFAVRARSYVVKLQGGDE 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDD 501
             +  W  + D++    Q+ YDRLNVTLT     GES Y   +  LV  L++KGL    D
Sbjct: 223 YCRTMWRKLIDITMVQNQQTYDRLNVTLTRDSVMGESLYNDLLPGLVADLKQKGLAVESD 282

Query: 502 GRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
           G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD I+Y  D 
Sbjct: 283 GATVVYLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLHADRILYYIDS 339

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
            Q  H  L++  TI+     R   Y+   V   +H+      FGM++ 
Sbjct: 340 RQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHM------FGMMLG 374



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/361 (39%), Positives = 191/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLE-KVQNENASDMAL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+E+KK +DEDE F  RA   VV LQ  D   +  W  + D++    Q+ YDRL
Sbjct: 187 SDLEAFYREAKKNYDEDEEFAVRARSYVVKLQGGDEYCRTMWRKLIDITMVQNQQTYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT     GES Y   +  LV  L++KG                         + + K
Sbjct: 247 NVTLTRDSVMGESLYNDLLPGLVADLKQKGLAVESDGATVVYLDEYKNKEGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       I+Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLHADRILYYIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE + R+   +++KN   ++   EL +  +A
Sbjct: 366 HHMFGMMLGKDGKPFKTRAGGTVRLTDLLDEAIERANTLIREKN--PDMPKDELKKVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ SI + AGI+      
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVTSIFKRAGIDENSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 110/191 (57%), Gaps = 11/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+   +++KN   ++   EL +  +AV  G +KYADLS +R  DY+F +D ML   G
Sbjct: 397  AIERANTLIREKN--PDMPKDELKKVVEAVGIGAVKYADLSKSRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ SI + AGI+   L     + PV L  E+E ALA  LL+  + +  V
Sbjct: 455  NTAPYMQYAYTRVTSIFKRAGIDENSL-----TLPVILNEEREQALATRLLQFEETITTV 509

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E     +   RL LA  TAK +K+  
Sbjct: 510  AREGTPHVMCAYLYDLAGLFSGFYEHCQILNAESEA----LRQSRLKLALLTAKTLKQGL 565

Query: 1109 DILNIRTVHKM 1119
            + L I TV +M
Sbjct: 566  NTLGIETVERM 576



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 17/144 (11%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  +HA+  A    G  T S A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQAILSEKVSHALIAA----GAPTDSEAHIRQSAKSQFGDYQANGVMAAAKKVG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
              P  +A+ + S++         L  +  K+E A PGF+N+FL + +    ++  + + 
Sbjct: 53  -MPPRQLAEKVVSLL--------DLQGIASKVEIAGPGFINIFLDKAWIAANVETALKDE 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
               T  K   ++VD+S+PN+A++
Sbjct: 104 KLGITPVKPQTIVVDYSAPNVAKQ 127


>gi|54308257|ref|YP_129277.1| arginyl-tRNA synthetase [Photobacterium profundum SS9]
 gi|81400047|sp|Q6LTA1.1|SYR_PHOPR RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|46912685|emb|CAG19475.1| putative arginyl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 576

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 214/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVIDVL--------DLDGIAEKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL + +   + ++ + +        K+  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDKSWLAARAEEALTDDRIGVAAEKQQNIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+VVR NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHNVVRANHIGDWGTQFGMLIANLERVQNETGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  RA   VV LQ  D    + W+ + DV+    Q  YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVRARAFVVKLQSGDEYCAEMWKKLVDVTMVQNQINYDRLNVSLTRDNVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L++KGL    DG ++++      +D   + + I K DGGF Y T+D+A 
Sbjct: 262 YNYMLPGIVADLKEKGLAVESDGAQVVFLDEYKNKDGDPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E+  AD ++Y  D  Q  H  L++  +I+     R   Y+  +V   +H      
Sbjct: 322 AKYRFEQLNADRVLYFIDSRQ--HQHLMQAWSIV-----RKAGYVPEEVTLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  217 bits (552), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 188/354 (53%), Gaps = 53/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+VVR NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY
Sbjct: 135 STIIGDAVVRTLEFLGHNVVRANHIGDWGTQFGMLIANLERVQNETGEVSMELADLEGFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DEDE F  RA   VV LQ  D    + W+ + DV+    Q  YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEEFAVRARAFVVKLQSGDEYCAEMWKKLVDVTMVQNQINYDRLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + K+ G    
Sbjct: 255 NVMGESMYNYMLPGIVADLKEKGLAVESDGAQVVFLDEYKNKDGDPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 315 TTTDIACAKYRFEQLNADRVLYFIDSRQHQHLMQAWSIVRKAGYV-PEEVTLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   +L   E  +  + VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDESEVRAAKLIEAKN--PDLDTAEKDKIAKTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + A +N  D   P
Sbjct: 432 YADLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRADVNLADLTHP 485



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ +L   E  +  + VA   +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 409  KNPDLDTAEKDKIAKTVAMAAVKYADLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 468

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            ASI + A +N  DL     + P+ +  EKE AL  TLL+  + ++ V+R+   H +C YL
Sbjct: 469  ASIFKRADVNLADL-----THPIVINDEKEQALLSTLLQFEEAVLNVSREGQPHLMCTYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++++  FS FY+ C  +  +     + V   RL LA  TAK +K+  D+L I T+ +M
Sbjct: 524  FELAGKFSSFYEACPILNAE-----EAVKQSRLKLALLTAKTIKQGLDLLGIETLERM 576



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVIDVL--------DLDGIAEKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL + +   + ++ + +        K+  ++VD+S+PN+A++      HL S I
Sbjct: 82  FINIFLDKSWLAARAEEALTDDRIGVAAEKQQNIVVDYSAPNVAKE--MHVGHLRSTI 137


>gi|148978252|ref|ZP_01814770.1| arginyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145962553|gb|EDK27830.1| arginyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 577

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 213/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+        +L  +  K+E+A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------NLDGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  +Q    + +        +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FLNIFLDEAFLAKQADAALADSRLGVAAAEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQAESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARGYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+++GL + DDG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNHMLPGIVADLKEQGLAKEDDGAQVVFLDEYKNKDGDPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRFEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 183/347 (52%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQAESGEVSMELADLEGFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEEFAVKARGYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+++G                         + + K+ G    
Sbjct: 255 DVMGESMYNHMLPGIVADLKEQGLAKEDDGAQVVFLDEYKNKDGDPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRFEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PESVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E       VA   +K
Sbjct: 374 LGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELAEDEKKAIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVS 478



 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E       VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAEDEKKAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++ + L        + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVSMDSLE-----GEIKITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILIAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIETLERM 577



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+        +L  +  K+E A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------NLDGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL   +  +Q    + +        +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FLNIFLDEAFLAKQADAALADSRLGVAAAEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|260901277|ref|ZP_05909672.1| arginine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|308109838|gb|EFO47378.1| arginine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
          Length = 577

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +       ++   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALADSRLGVAADEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   DDG ++++ E     D  ++ + + K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/353 (38%), Positives = 188/353 (53%), Gaps = 57/353 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+LT     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLTRDDVMGESMYNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E  +  + 
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELDAEEKEKISKT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG+
Sbjct: 425 VAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGV 477



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E  +  + VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELDAEEKEKISKTVAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG+  ++L+       + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVAMDELQ-----GDIQITDEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIETLERM 577



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +       ++   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALADSRLGVAADEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|319955938|ref|YP_004167201.1| arginyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
 gi|319418342|gb|ADV45452.1| arginyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
          Length = 565

 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 152/371 (40%), Positives = 214/371 (57%), Gaps = 38/371 (10%)

Query: 236 TNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDK 295
            NE    +FGD+Q N AM L K        KNP  IAQ I       L  NP    ++ K
Sbjct: 27  VNEAGKPEFGDYQFNGAMPLAKKLG-----KNPRQIAQEIVEA----LPENP----ILSK 73

Query: 296 IEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVG 352
            E+A PGF+N+ LS  +   ++++   +   GV   +  K  RV+VD+SSPN+AK+MHVG
Sbjct: 74  AEIAGPGFINLTLSPKWLAARLEEAARDERLGVGRQSEPK--RVVVDYSSPNMAKQMHVG 131

Query: 353 HLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412
           HLRSTIIGD+++ L  +LG +V+R NH+GDWGTQFGMLIA+L++           + DL+
Sbjct: 132 HLRSTIIGDSLANLFAFLGDEVIRQNHIGDWGTQFGMLIAYLEELGE---GAEGSLHDLE 188

Query: 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL 472
            FYK +KKRFDED  F  ++ + VV LQ  D      WE   D S    +++Y +L+V L
Sbjct: 189 EFYKAAKKRFDEDAAFADKSREYVVKLQGGDVKCLHLWENFIDKSLGHCEEVYSKLHVRL 248

Query: 473 TE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDT 529
           T    + ES Y   ++++V  L+ KGLL+   G K+++ +D  + P+ I KSDGGF Y T
Sbjct: 249 TREDVKAESSYNDDLQKIVEDLQAKGLLKESRGAKVVFTDDEEN-PLIIQKSDGGFLYAT 307

Query: 530 SDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHV 589
           +DLAAIR R++E  A  I YV D  Q  HF+ +         ++R+  Y   D VRL HV
Sbjct: 308 TDLAAIRFRVKELGAKRISYVVDARQAGHFKQV-------FAVARMAGYAPED-VRLEHV 359

Query: 590 GDWGTQFGMLI 600
                 FGM++
Sbjct: 360 -----SFGMML 365



 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/336 (36%), Positives = 177/336 (52%), Gaps = 51/336 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++ L  +LG +V+R NH+GDWGTQFGMLIA+L++           + DL+ FY
Sbjct: 135 STIIGDSLANLFAFLGDEVIRQNHIGDWGTQFGMLIAYLEELGE---GAEGSLHDLEEFY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           K +KKRFDED  F  ++ + VV LQ  D      WE   D S    +++Y +L+V LT  
Sbjct: 192 KAAKKRFDEDAAFADKSREYVVKLQGGDVKCLHLWENFIDKSLGHCEEVYSKLHVRLTRE 251

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLT-------------------------------- 709
             + ES Y   ++++V  L+ KG L  +                                
Sbjct: 252 DVKAESSYNDDLQKIVEDLQAKGLLKESRGAKVVFTDDEENPLIIQKSDGGFLYATTDLA 311

Query: 710 ------KKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 760
                 K+LG   I YV D  Q  HF+ +   A+ AG   P   R++ V FG++L +  +
Sbjct: 312 AIRFRVKELGAKRISYVVDARQAGHFKQVFAVARMAG-YAPEDVRLEHVSFGMMLDKSGR 370

Query: 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH 820
            FKTR G TVKL +LLDE + R+   +  +  + E    EL +  + V  G +KY+DLS 
Sbjct: 371 PFKTRDGGTVKLIDLLDEAVERAKGAITQREAYDE---EELEKIAEIVGIGAVKYSDLSI 427

Query: 821 NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           NR  +Y+F +D+ML   GNT++Y  YAY RI SI R
Sbjct: 428 NRESNYIFDWDRMLSLEGNTSLYQQYAYARIRSIFR 463



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 11/170 (6%)

Query: 950  ELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 1009
            EL +  + V  G +KY+DLS NR  +Y+F +D+ML   GNT++Y  YAY RI SI R   
Sbjct: 407  ELEKIAEIVGIGAVKYSDLSINRESNYIFDWDRMLSLEGNTSLYQQYAYARIRSIFRKYD 466

Query: 1010 INSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFS 1069
               E          V L  E E  LA  LL++ DVL    R+   H++  YLYD++T F 
Sbjct: 467  GTIE--------GKVQLGDELERRLALKLLQLEDVLRAAAREAMPHYITGYLYDLATLFM 518

Query: 1070 EFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            +FY+N   +  D   +++     RL LA++TA  +K   +IL I+ + ++
Sbjct: 519  KFYENNPILRSDVPEELR---QSRLQLAKSTADTLKLALEILGIKVLERL 565



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 18/116 (15%)

Query: 40  TNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDK 99
            NE    +FGD+Q N AM L K        KNP  IAQ I       L  NP    ++ K
Sbjct: 27  VNEAGKPEFGDYQFNGAMPLAKKLG-----KNPRQIAQEIVEA----LPENP----ILSK 73

Query: 100 IEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
            E A PGF+N+ LS  +   ++++   +   GV   +  K  RV+VD+SSPN+A++
Sbjct: 74  AEIAGPGFINLTLSPKWLAARLEEAARDERLGVGRQSEPK--RVVVDYSSPNMAKQ 127


>gi|417948693|ref|ZP_12591836.1| arginyl-tRNA synthetase [Vibrio splendidus ATCC 33789]
 gi|342809304|gb|EGU44425.1| arginyl-tRNA synthetase [Vibrio splendidus ATCC 33789]
          Length = 577

 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 213/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+        +L  +  K+E+A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------NLDGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  +Q    + +        +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FLNIFLDEAFLAKQADAALADSRLGVAAAEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQAESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARGYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+++GL + DDG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNHMLPGIVADLKEQGLAKEDDGAQVVFLDEYKNKDGDPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRFEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  215 bits (548), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 183/347 (52%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQAESGEVSMELADLEGFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEEFAVKARGYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+++G                         + + K+ G    
Sbjct: 255 DVMGESMYNHMLPGIVADLKEQGLAKEDDGAQVVFLDEYKNKDGDPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRFEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PESVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E       VA   +K
Sbjct: 374 LGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELAENEKKAIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVS 478



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E       VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAENEKKAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++ + L        + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVSMDSLE-----GEIKITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIETLERM 577



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+        +L  +  K+E A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------NLDGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL   +  +Q    + +        +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FLNIFLDEAFLAKQADAALADSRLGVAAAEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|72160673|ref|YP_288330.1| arginyl-tRNA synthetase [Thermobifida fusca YX]
 gi|109895049|sp|Q47TB0.1|SYR_THEFY RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|71914405|gb|AAZ54307.1| arginyl-tRNA synthetase [Thermobifida fusca YX]
          Length = 576

 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 200/332 (60%), Gaps = 21/332 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +F DFQ N A+AL K  +     ++P D+A +I    T  L     ++ V  K+E++ PG
Sbjct: 35  QFADFQANVALALAKRLR-----RSPRDVATAI----TEHL----DISDVCSKVEISGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+ L   +   Q+ D++ +      + +   + +D+S+PN+AKEMHVGHLR+T++GD 
Sbjct: 82  FINLTLRDDWIAHQVHDLLTDERLGTPVQESQNIPIDYSAPNVAKEMHVGHLRTTVVGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           ++R+LE+LGH V+R NH+GDWGT FGMLI HL +   D    +   +D  AFY+ ++ +F
Sbjct: 142 LARILEFLGHHVIRQNHIGDWGTPFGMLIEHLLEVGEDSAEAAQLKSDPNAFYQAARAKF 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           D DE F  RA + VVALQ  D +  + W  + ++S+  F +IY +L+VTLT+    GES 
Sbjct: 202 DSDEDFADRARRRVVALQSGDAETLRLWRDLIELSKIYFNRIYRKLDVTLTDAHLAGEST 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +   L +KGL  + DG   ++     G +   +P+ I KSDGG+ Y T+DLA 
Sbjct: 262 YNDMLGPVCDELAEKGLAVVSDGALCVFLEGFTGREGKPVPLIIRKSDGGYGYATTDLAT 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEEST 566
           I+ R+E+ KAD I+YV    Q +H R++ E+ 
Sbjct: 322 IKYRVEQLKADRIIYVVGAPQSLHLRMVYETA 353



 Score =  186 bits (473), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 174/352 (49%), Gaps = 64/352 (18%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +T++GD ++R+LE+LGH V+R NH+GDWGT FGMLI HL +   D    +   +D  AFY
Sbjct: 135 TTVVGDALARILEFLGHHVIRQNHIGDWGTPFGMLIEHLLEVGEDSAEAAQLKSDPNAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + ++ +FD DE F  RA + VVALQ  D +  + W  + ++S+  F +IY +L+VTLT+ 
Sbjct: 195 QAARAKFDSDEDFADRARRRVVALQSGDAETLRLWRDLIELSKIYFNRIYRKLDVTLTDA 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +   L +KG                         L + K  G    
Sbjct: 255 HLAGESTYNDMLGPVCDELAEKGLAVVSDGALCVFLEGFTGREGKPVPLIIRKSDGGYGY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              I+YV    Q +H R++ E A++AG L         V  G V
Sbjct: 315 ATTDLATIKYRVEQLKADRIIYVVGAPQSLHLRMVYETARQAGWL--GNAEPIHVQIGNV 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA-----VA 809
           LG D K  +TRSG  V+L  LLDE + R+   +         T  +L E  +A     V 
Sbjct: 373 LGSDGKILRTRSGAPVRLMALLDEAVERASAVVAQ-------TRPDLDEETRAAIARDVG 425

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            G +KYADLS   + +YVF FD+ML   GNT  YL YA  RI SI R  GI+
Sbjct: 426 IGAVKYADLSIAHDTEYVFDFDRMLALNGNTGPYLQYAVARIRSIFRKGGID 477



 Score =  102 bits (255), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 9/162 (5%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V  G +KYADLS   + +YVF FD+ML   GNT  YL YA  RI SI R  GI+      
Sbjct: 424  VGIGAVKYADLSIAHDTEYVFDFDRMLALNGNTGPYLQYAVARIRSIFRKGGIDP----- 478

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
            A  + P+ +    E ALA  LL     ++ V   L  H LC YL+D++  F+ FY+ C  
Sbjct: 479  AQVTGPIQVTEPAERALALKLLDFGATVVQVGDTLEPHRLCTYLFDLAQTFTAFYEACPV 538

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ D +     V   RL L   T   + K  D+L +R   +M
Sbjct: 539  LKADRD----EVRNSRLALTAVTLHTLVKGLDLLGVRAPEQM 576



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +F DFQ N A+AL K  +     ++P D+A +I    T  L     ++ V  K+E + PG
Sbjct: 35  QFADFQANVALALAKRLR-----RSPRDVATAI----TEHL----DISDVCSKVEISGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   +   Q+ D++ +      + +   + +D+S+PN+A++
Sbjct: 82  FINLTLRDDWIAHQVHDLLTDERLGTPVQESQNIPIDYSAPNVAKE 127


>gi|350530641|ref|ZP_08909582.1| arginyl-tRNA synthetase [Vibrio rotiferianus DAT722]
          Length = 577

 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 169/494 (34%), Positives = 252/494 (51%), Gaps = 55/494 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +       ++   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALADSRLGVAADEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+L+     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLSRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   DDG ++++ E     D  ++ + + K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL-------QAFYKESKK-RFDEDEIFKKRAYQCVV 646
            FGM++      F      +  +ADL        A   ESK     EDE   K+A    V
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKNPELAEDE---KKAIANTV 425

Query: 647 ALQRFDPDYKKAWEMICDVSR-RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGN 705
           A+         A     D+S+ R    ++D  N+   E   + Y ++    V  +  K  
Sbjct: 426 AM---------AAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAG 476

Query: 706 LSLTKKLGIVYVTD 719
           +S+    G + +TD
Sbjct: 477 VSMDDLQGEIKITD 490



 Score =  216 bits (550), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 189/357 (52%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+L+     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLSRDDVMGESMYNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E       
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELAEDEKKAIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++ +D
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVSMDD 481



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E       VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAEDEKKAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++ +DL+       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVSMDDLQ-----GEIKITDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +       ++   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALADSRLGVAADEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|269960720|ref|ZP_06175092.1| Arginyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|269834797|gb|EEZ88884.1| Arginyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 577

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 169/494 (34%), Positives = 252/494 (51%), Gaps = 55/494 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +       ++   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALTDSRLGVAADEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+L+     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLSRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   DDG ++++ E     D  ++ + + K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL-------QAFYKESKK-RFDEDEIFKKRAYQCVV 646
            FGM++      F      +  +ADL        A   ESK     EDE   K+A    V
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKNPELAEDE---KKAIANTV 425

Query: 647 ALQRFDPDYKKAWEMICDVSR-RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGN 705
           A+         A     D+S+ R    ++D  N+   E   + Y ++    V  +  K  
Sbjct: 426 AM---------AAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAG 476

Query: 706 LSLTKKLGIVYVTD 719
           +S+    G + +TD
Sbjct: 477 VSMDDLQGEIKITD 490



 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 189/357 (52%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+L+     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLSRDDVMGESMYNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E       
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELAEDEKKAIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++ +D
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVSMDD 481



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E       VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAEDEKKAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++ +DL+       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVSMDDLQ-----GEIKITDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +       ++   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALTDSRLGVAADEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|156973665|ref|YP_001444572.1| arginyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|388599667|ref|ZP_10158063.1| arginyl-tRNA ligase [Vibrio campbellii DS40M4]
 gi|424033638|ref|ZP_17773051.1| arginine--tRNA ligase [Vibrio cholerae HENC-01]
 gi|424041255|ref|ZP_17779231.1| arginine--tRNA ligase [Vibrio cholerae HENC-02]
 gi|424047118|ref|ZP_17784679.1| arginine--tRNA ligase [Vibrio cholerae HENC-03]
 gi|166200586|sp|A7MT26.1|SYR_VIBHB RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|156525259|gb|ABU70345.1| hypothetical protein VIBHAR_01368 [Vibrio harveyi ATCC BAA-1116]
 gi|408874297|gb|EKM13471.1| arginine--tRNA ligase [Vibrio cholerae HENC-01]
 gi|408884416|gb|EKM23160.1| arginine--tRNA ligase [Vibrio cholerae HENC-03]
 gi|408890930|gb|EKM28897.1| arginine--tRNA ligase [Vibrio cholerae HENC-02]
          Length = 577

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 169/494 (34%), Positives = 252/494 (51%), Gaps = 55/494 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +       ++   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALADSRLGVAADEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+L+     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLSRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   DDG ++++ E     D  ++ + + K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL-------QAFYKESKK-RFDEDEIFKKRAYQCVV 646
            FGM++      F      +  +ADL        A   ESK     EDE   K+A    V
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKNPELAEDE---KKAIANTV 425

Query: 647 ALQRFDPDYKKAWEMICDVSR-RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGN 705
           A+         A     D+S+ R    ++D  N+   E   + Y ++    V  +  K  
Sbjct: 426 AM---------AAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAG 476

Query: 706 LSLTKKLGIVYVTD 719
           +S+    G + +TD
Sbjct: 477 VSMDDLQGEIKITD 490



 Score =  216 bits (549), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 189/357 (52%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+L+     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLSRDDVMGESMYNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E       
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELAEDEKKAIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++ +D
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVSMDD 481



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E       VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAEDEKKAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++ +DL+       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVSMDDLQ-----GEIKITDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +       ++   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALADSRLGVAADEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|119773583|ref|YP_926323.1| arginyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|166232838|sp|A1S2P7.1|SYR_SHEAM RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|119766083|gb|ABL98653.1| arginyl-tRNA synthetase [Shewanella amazonensis SB2B]
          Length = 581

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 153/398 (38%), Positives = 224/398 (56%), Gaps = 38/398 (9%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K+       K P ++AQ I       +   P+ A+V  K+E+A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKPPREMAQLI-------IDNLPASAQVA-KVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F+       Q+K  + + +          V+VD+SSPN+AKEMHVGHLRSTIIGD++ 
Sbjct: 88  NFFIDDNALANQLKAALGDAMLGVKAAAPQTVVVDYSSPNLAKEMHVGHLRSTIIGDSVV 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAFYKESKKRFD 423
           R LE+LGH V+R NHVGDWGTQFGML+A++++       K+   ++DL++FY+ +K RFD
Sbjct: 148 RALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAQGDDKANLELSDLESFYRAAKLRFD 207

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFY 480
           E + F  RA Q VV LQ  D    K W    D+S      +Y RL V+LT +   GES Y
Sbjct: 208 ESDEFATRARQLVVELQSGDAYCNKLWREFNDISLSHCHDVYARLGVSLTRKDVHGESAY 267

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAI 535
              + Q+V  L+ KGLL + DG K+++ E     D   +P+ I K+DGGF Y T+DLAA+
Sbjct: 268 NADLAQVVADLDAKGLLAISDGAKVVFQEEFRNKDGEPLPVIIQKADGGFLYATTDLAAM 327

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 595
           R R     AD ++Y  DL Q +HF+ +        +++R   ++  D + L H+G +GT 
Sbjct: 328 RYRSGVLNADRVLYFVDLRQALHFQQVF-------SLARTAGFV-RDNMTLEHMG-FGTM 378

Query: 596 FGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 633
            G      +D  P + T+S  +  L     E+ +R ++
Sbjct: 379 NG------EDGRP-FKTRSGGVVKLVDLLDEAVERAEQ 409



 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 189/345 (54%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP-PIADLQAF 623
           STIIGD++ R LE+LGH V+R NHVGDWGTQFGML+A++++       K+   ++DL++F
Sbjct: 139 STIIGDSVVRALEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAQGDDKANLELSDLESF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE + F  RA Q VV LQ  D    K W    D+S      +Y RL V+LT 
Sbjct: 199 YRAAKLRFDESDEFATRARQLVVELQSGDAYCNKLWREFNDISLSHCHDVYARLGVSLTR 258

Query: 684 R---GESFYQKHMEQLVPYLEKKGNLSLTKKLGIV------------------------- 715
           +   GES Y   + Q+V  L+ KG L+++    +V                         
Sbjct: 259 KDVHGESAYNADLAQVVADLDAKGLLAISDGAKVVFQEEFRNKDGEPLPVIIQKADGGFL 318

Query: 716 ----------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                 Y  DL Q +HF+ +   A+ AG +  N T ++ +GFG 
Sbjct: 319 YATTDLAAMRYRSGVLNADRVLYFVDLRQALHFQQVFSLARTAGFVRDNMT-LEHMGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTRSG  VKL +LLDE + R+   ++ KN   ++  TE+ E  + V    +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLVDLLDEAVERAEQLVRSKN--PDMDETEVKEIARVVGIASV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR+ DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRSSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKKA 480



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 106/180 (58%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ ++  TE+ E  + V    +KYADLS NR+ DY+FSF++ML   GNTA YLLYAYT
Sbjct: 412  RSKNPDMDETEVKEIARVVGIASVKYADLSKNRSSDYIFSFEQMLSFEGNTAPYLLYAYT 471

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A I + A    E++ +   +  + L+H+KE  L   L +  ++L  +      H LC 
Sbjct: 472  RVAGIFKKA----ENIDLT--NAELVLDHDKEKELGNKLAQFGEILARMVDKGQPHILCG 525

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY+++ AFS FY+ C  +  D+E    T    RLLL+  TA  +K+   +L I T+ +M
Sbjct: 526  YLYELAGAFSSFYEACPVLSADSE----TARDSRLLLSRLTADTLKQGLSLLGIETLERM 581



 Score = 45.8 bits (107), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K+       K P ++AQ I       +   P+ A+V  K+E A PGF+
Sbjct: 41  GDLATNLAMMLTKV-----AGKPPREMAQLI-------IDNLPASAQVA-KVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           N F+       Q+K  + + +          V+VD+SSPN+A++      HL S I
Sbjct: 88  NFFIDDNALANQLKAALGDAMLGVKAAAPQTVVVDYSSPNLAKE--MHVGHLRSTI 141


>gi|417320419|ref|ZP_12106965.1| arginyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
 gi|328473382|gb|EGF44230.1| arginyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 577

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 210/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLNGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +        +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQADAALADSRLGVAAEEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   DDG ++++ E     D  ++ + + K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/353 (38%), Positives = 188/353 (53%), Gaps = 57/353 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+LT     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLTRDDVMGESMYNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E  +  + 
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELDAEEKEKISKT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG+
Sbjct: 425 VAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGV 477



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E  +  + VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELDAEEKEKISKTVAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG+  ++L+       + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVAMDELQ-----GDIQITDEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIETLERM 577



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLNGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +        +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQADAALADSRLGVAAEEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|90411614|ref|ZP_01219624.1| arginyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90327504|gb|EAS43857.1| arginyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 576

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 213/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVIDVL--------DLDGIAEKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL + +   + ++ + +        K+  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDKSWLAARAEEALTDDRIGVAAEKQQNIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQNETGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  RA   VV LQ  D      W+ + DV+    Q  YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVRARGFVVKLQSGDEYCAGMWKKLVDVTMVQNQINYDRLNVSLTRDNVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L++KGL    DG ++++      +D   + + I K DGGF Y T+D+A 
Sbjct: 262 YNDMLPNIVADLKEKGLAVESDGAQVVFLDEYKNKDGDPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E+  AD ++Y  D  Q  H  L++  +I+     R   Y+  +V   +H      
Sbjct: 322 AKYRFEQLNADRVLYFIDSRQ--HQHLMQAWSIV-----RKAGYVPEEVTLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  219 bits (559), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 188/354 (53%), Gaps = 53/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY
Sbjct: 135 STIIGDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQNETGEVSMELADLEGFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DEDE F  RA   VV LQ  D      W+ + DV+    Q  YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEEFAVRARGFVVKLQSGDEYCAGMWKKLVDVTMVQNQINYDRLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPNIVADLKEKGLAVESDGAQVVFLDEYKNKDGDPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 315 TTTDIACAKYRFEQLNADRVLYFIDSRQHQHLMQAWSIVRKAGYV-PEEVTLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL  TE  +  + VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDESEVRAAKLIEAKN--PELEATEKDKIAKTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + A +N  D   P
Sbjct: 432 YADLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRADVNLADLTHP 485



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 105/178 (58%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ EL  TE  +  + VA   +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 409  KNPELEATEKDKIAKTVAMAAVKYADLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 468

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            ASI + A +N  DL     + P+ +  EKE AL  TLL+  + ++ V+R+   H +C YL
Sbjct: 469  ASIFKRADVNLADL-----THPIVINDEKEQALLSTLLQFEEAVLNVSREGQPHLMCTYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++++  FS FY+ C  +  +     + V   RL LA  TAK +K+  D+L I T+ +M
Sbjct: 524  FELAGKFSSFYEACPILNAE-----EAVKQSRLKLALLTAKTIKQGLDLLGIETLERM 576



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVIDVL--------DLDGIAEKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL + +   + ++ + +        K+  ++VD+S+PN+A++      HL S I
Sbjct: 82  FINIFLDKSWLAARAEEALTDDRIGVAAEKQQNIVVDYSAPNVAKE--MHVGHLRSTI 137


>gi|381394765|ref|ZP_09920477.1| arginyl-tRNA synthetase [Glaciecola punicea DSM 14233 = ACAM 611]
 gi|379329732|dbj|GAB55610.1| arginyl-tRNA synthetase [Glaciecola punicea DSM 14233 = ACAM 611]
          Length = 580

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/370 (38%), Positives = 211/370 (57%), Gaps = 32/370 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELG--DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 262
           M+++  L + FT A+ +    LG  D    VA   +K    FG++Q N AM L K  K  
Sbjct: 1   MNIQQLLVERFTSALNI----LGFTDAPVPVAKNTKK---GFGEYQFNGAMGLAKKLK-- 51

Query: 263 GEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
              +NP DIAQ I   V  S++A+          +E+A PGF+N+ ++ ++   Q+  ++
Sbjct: 52  ---QNPRDIAQQIIDAVDISDMAST---------LEIAGPGFINIHINNMWLSAQLSAVL 99

Query: 322 VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
            +      +     V+VD+S+PN+AKEMHVGHLRSTIIGD + R L +LGH+V+R NH+G
Sbjct: 100 SDKRLGIDIVPAKNVVVDYSAPNLAKEMHVGHLRSTIIGDAVVRCLAFLGHNVIRQNHMG 159

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGML+AHLQDK          ++DL+ FY+E+K RFD +E F   A Q VV LQ 
Sbjct: 160 DWGTQFGMLLAHLQDKLAQDQVAETALSDLEDFYREAKVRFDNEEGFADTARQYVVRLQG 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D +    W+   DVS    + IY  L V+L+ +   GES Y   +  +V  L++KG+ +
Sbjct: 220 GDKECLALWKNFIDVSISHSEDIYKTLGVSLSRQDVMGESAYNDDLATVVSILKEKGIAQ 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            D G ++++ +   D+   P   +  KS GG+ Y T+DLAAIR R    +AD  +  TD 
Sbjct: 280 EDAGAQVVFLQELADKNGKPAVYIVQKSGGGYLYATTDLAAIRHRSSVLQADRTLIFTDA 339

Query: 554 GQGVHFRLLE 563
            Q +HF+  E
Sbjct: 340 RQALHFKQTE 349



 Score =  219 bits (557), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 134/344 (38%), Positives = 184/344 (53%), Gaps = 53/344 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R L +LGH+V+R NH+GDWGTQFGML+AHLQDK          ++DL+ FY
Sbjct: 134 STIIGDAVVRCLAFLGHNVIRQNHMGDWGTQFGMLLAHLQDKLAQDQVAETALSDLEDFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K RFD +E F   A Q VV LQ  D +    W+   DVS    + IY  L V+L+ +
Sbjct: 194 REAKVRFDNEEGFADTARQYVVRLQGGDKECLALWKNFIDVSISHSEDIYKTLGVSLSRQ 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLGIVYV- 717
              GES Y   +  +V  L++KG                        + + +K G  Y+ 
Sbjct: 254 DVMGESAYNDDLATVVSILKEKGIAQEDAGAQVVFLQELADKNGKPAVYIVQKSGGGYLY 313

Query: 718 -----------------------TDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                                  TD  Q +HF+  E  A+KA  + P++       FG++
Sbjct: 314 ATTDLAAIRHRSSVLQADRTLIFTDARQALHFKQTEMVARKANFMQPDEA-YQHCPFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL +LLDE + R+ +KL    R  ++ P +L++ +  +  G +K
Sbjct: 373 LGKDNKPFKTRTGGTVKLIDLLDEAVERA-EKLV-LGRKPDIDPQQLAQMKSTLGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           YADLS NR  DYVF ++ ML   GNTA YL YAYTRI SI   A
Sbjct: 431 YADLSKNRTTDYVFDWNAMLSFEGNTAPYLQYAYTRIQSIFEKA 474



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 101/180 (56%), Gaps = 7/180 (3%)

Query: 941  NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
             R  ++ P +L++ +  +  G +KYADLS NR  DYVF ++ ML   GNTA YL YAYTR
Sbjct: 407  GRKPDIDPQQLAQMKSTLGIGAVKYADLSKNRTTDYVFDWNAMLSFEGNTAPYLQYAYTR 466

Query: 1001 IASIARTAGINSEDLRVAAQST-PVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            I SI   A     D    AQST  +S+E + E AL   LL+  + L LV  +   H LC 
Sbjct: 467  IQSIFEKAKF---DPAAHAQSTIEMSIEQDAEKALCLHLLQCQNALELVAIEATPHILCT 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++++ +  FY+ C  ++ D   + K  HT RL L   TA  +K   D+L I T+ KM
Sbjct: 524  YLYELASLYMRFYEACPILKDDVSRQSK--HT-RLSLCVLTASTLKLGLDLLGIGTMQKM 580



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 24/147 (16%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELG--DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           M+++  L + FT A+ +    LG  D    VA   +K    FG++Q N AM L K  K  
Sbjct: 1   MNIQQLLVERFTSALNI----LGFTDAPVPVAKNTKK---GFGEYQFNGAMGLAKKLK-- 51

Query: 67  GEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
              +NP DIAQ I   V  S++A+          +E A PGF+N+ ++ ++   Q+  ++
Sbjct: 52  ---QNPRDIAQQIIDAVDISDMAST---------LEIAGPGFINIHINNMWLSAQLSAVL 99

Query: 126 VNGVQPPTLNKKLRVLVDFSSPNIARK 152
            +      +     V+VD+S+PN+A++
Sbjct: 100 SDKRLGIDIVPAKNVVVDYSAPNLAKE 126


>gi|204930959|ref|ZP_03221785.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|452119892|ref|YP_007470140.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Javiana str. CFSAN001992]
 gi|204320003|gb|EDZ05208.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|451908896|gb|AGF80702.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Javiana str. CFSAN001992]
          Length = 577

 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/389 (38%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PTL     ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPTLQT---IVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN +  +   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPN--MPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN +  +   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKNPN--MPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PTL     ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPTLQT---IVVDYSAPNVAKE 127


>gi|261252368|ref|ZP_05944941.1| arginyl-tRNA synthetase [Vibrio orientalis CIP 102891 = ATCC 33934]
 gi|417954023|ref|ZP_12597063.1| arginyl-tRNA synthetase [Vibrio orientalis CIP 102891 = ATCC 33934]
 gi|260935759|gb|EEX91748.1| arginyl-tRNA synthetase [Vibrio orientalis CIP 102891 = ATCC 33934]
 gi|342816063|gb|EGU50968.1| arginyl-tRNA synthetase [Vibrio orientalis CIP 102891 = ATCC 33934]
          Length = 577

 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 214/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLEGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +     T  ++  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQADAALADARLGVTAEEQKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKESGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  RA   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVRARNYVVKLQSGDEYCAEMWKKLVDVTMVQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L+++GL + DDG ++++ E     D  ++ + I K DGGF Y T+D+A 
Sbjct: 262 YNDMLPGIVADLKQQGLAQEDDGAQVVFLEEYKNKDGEAMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 322 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPEEVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  217 bits (552), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/350 (38%), Positives = 187/350 (53%), Gaps = 53/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKESGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DEDE F  RA   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEEFAVRARNYVVKLQSGDEYCAEMWKKLVDVTMVQNQRNYDRLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+++G                         + + K+ G    
Sbjct: 255 DVMGESMYNDMLPGIVADLKQQGLAQEDDGAQVVFLEEYKNKDGEAMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PEEVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN    L   E S     VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAEERATKLIESKN--PSLDAEEKSNIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR++SI   AGI+ ++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVSSIFAKAGISMDN 481



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++  L   E S     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPSLDAEEKSNIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R++SI   AGI+ ++L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVSSIFAKAGISMDNL-----AGEIKVTEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILNTEDE----SVKQSRLKLAALTAKTIKQGLSLLGIETLERM 577



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLEGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +     T  ++  ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQADAALADARLGVTAEEQKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|90022024|ref|YP_527851.1| arginyl-tRNA synthetase [Saccharophagus degradans 2-40]
 gi|109895032|sp|Q21I40.1|SYR_SACD2 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|89951624|gb|ABD81639.1| arginyl-tRNA synthetase [Saccharophagus degradans 2-40]
          Length = 579

 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 204/368 (55%), Gaps = 32/368 (8%)

Query: 205 MSVRDYLSDVFTHAVQ-VAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++R+ L+D    A+     P   D +  +A + +     FGD+Q N AM   K  K   
Sbjct: 1   MNIRNLLNDRVKSAMNDAGIP--ADYSPHLAVSKKA---GFGDYQANGAMGAAKALK--- 52

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
              NP ++AQ I          N  L  +  K+E+A PGF+N+ L   +  +Q   +  +
Sbjct: 53  --TNPREVAQKIID--------NLDLNGIASKVEIAGPGFINIHLDPKWLAQQTVAVTNS 102

Query: 324 ---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
              G+ P   N    V++D+SSPN+AKEMHVGHLRSTIIGD I+R+LE+ G  V+R NHV
Sbjct: 103 TNLGILPK--NNPETVVIDYSSPNLAKEMHVGHLRSTIIGDAIARVLEFTGDKVIRQNHV 160

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGMLIA L+D+          + DL+ FY+++KK FD+D  F  RA   VV LQ
Sbjct: 161 GDWGTQFGMLIAELEDQLGSGERPELALQDLEGFYQQAKKHFDDDPAFADRARDYVVKLQ 220

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLL 497
             D    K W+    VS    ++IY +LNVTL E   RGES Y   +  +V  LE +GL 
Sbjct: 221 SGDAQVNKLWQEFRRVSLLHAEEIYRKLNVTLGEADVRGESAYNDDLAPVVAELEAQGLA 280

Query: 498 ELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
             D G K+++     +  G   + I+ K DGG+ Y TSDLAA+R R+   KA+ I+Y  D
Sbjct: 281 VEDQGAKVVFLHELADKNGDPSVAIIQKKDGGYLYSTSDLAALRYRVGTLKANRILYFID 340

Query: 553 LGQGVHFR 560
             Q +H +
Sbjct: 341 ARQSLHMQ 348



 Score =  216 bits (549), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 181/347 (52%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD I+R+LE+ G  V+R NHVGDWGTQFGMLIA L+D+          + DL+ FY
Sbjct: 136 STIIGDAIARVLEFTGDKVIRQNHVGDWGTQFGMLIAELEDQLGSGERPELALQDLEGFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK FD+D  F  RA   VV LQ  D    K W+    VS    ++IY +LNVTL E 
Sbjct: 196 QQAKKHFDDDPAFADRARDYVVKLQSGDAQVNKLWQEFRRVSLLHAEEIYRKLNVTLGEA 255

Query: 684 --RGESFYQKHMEQLVPYLE---------------------KKGNLSLT---KKLG---- 713
             RGES Y   +  +V  LE                     K G+ S+    KK G    
Sbjct: 256 DVRGESAYNDDLAPVVAELEAQGLAVEDQGAKVVFLHELADKNGDPSVAIIQKKDGGYLY 315

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              I+Y  D  Q +H + +   A+KAG  +      +   FG +
Sbjct: 316 STSDLAALRYRVGTLKANRILYFIDARQSLHMQQVFTLARKAGFAD-EWLSTEHHAFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D K FKTRSG TVKL++LLDE + R+  +++ KN   +LT  E++E    V  G +K
Sbjct: 375 LGSDGKPFKTRSGGTVKLAQLLDEAVERAAKEVRTKN--PDLTEEEMAEVASKVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADL   R  DYVF+++ ML   GNT  Y+ YAYTRI SI R A  N
Sbjct: 433 YADLCKTRTNDYVFNWESMLAFEGNTGPYMQYAYTRIRSIFRRANEN 479



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+  +++ KN   +LT  E++E    V  G +KYADL   R  DYVF+++ ML   G
Sbjct: 399  AVERAAKEVRTKN--PDLTEEEMAEVASKVGIGAVKYADLCKTRTNDYVFNWESMLAFEG 456

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NT  Y+ YAYTRI SI R A  N +        + V+L   +E  LA  LL++ +++  +
Sbjct: 457  NTGPYMQYAYTRIRSIFRRANENMDTFE-----SEVNLTEPQEVQLAIKLLQLPEIVEQI 511

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
              D   H +C YLYD+++ F  FY+ C  +++  E  +K   T RL L++  A+ + +  
Sbjct: 512  AADAYPHVMCNYLYDLASLFMTFYEACPILKEGVEPAVK---TSRLQLSKGVARTLAQGL 568

Query: 1109 DILNIRTVHKM 1119
            D+L I  + KM
Sbjct: 569  DLLGIEVMEKM 579



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 30/170 (17%)

Query: 9   MSVRDYLSDVFTHAVQ-VAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++R+ L+D    A+     P   D +  +A + +     FGD+Q N AM   K  K   
Sbjct: 1   MNIRNLLNDRVKSAMNDAGIP--ADYSPHLAVSKKA---GFGDYQANGAMGAAKALK--- 52

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
              NP ++AQ I          N  L  +  K+E A PGF+N+ L   +  +Q   +  +
Sbjct: 53  --TNPREVAQKIID--------NLDLNGIASKVEIAGPGFINIHLDPKWLAQQTVAVTNS 102

Query: 128 ---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIA 174
              G+ P   N    V++D+SSPN+A++      HL S I    I  AIA
Sbjct: 103 TNLGILPK--NNPETVVIDYSSPNLAKE--MHVGHLRSTI----IGDAIA 144


>gi|167855456|ref|ZP_02478221.1| hypothetical protein HPS_03952 [Haemophilus parasuis 29755]
 gi|167853450|gb|EDS24699.1| hypothetical protein HPS_03952 [Haemophilus parasuis 29755]
          Length = 575

 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/326 (39%), Positives = 195/326 (59%), Gaps = 22/326 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +          N  L  + +K+E+A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----LNPREFAQKVVD--------NVDLNGIAEKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL+  +  +Q ++          LN+   V+VD+SSPN+AKEMHVGHLRSTIIGD+
Sbjct: 82  FINIFLAPTWLAQQTENAFSGDKLGINLNQAQTVVVDYSSPNVAKEMHVGHLRSTIIGDS 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R+LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K+ +
Sbjct: 142 VVRVLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFYRTAKEHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           D DE+F ++A   VV LQ  D   +  W+ + +++ +  Q  Y+RLNVTLTE    GES 
Sbjct: 201 DSDEVFAEKARNYVVKLQSGDDYCRTMWKKLVNITMQQNQHNYNRLNVTLTENDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   DDG  +++ +   ++   PM ++  K DGGF Y T+D+AA
Sbjct: 261 YNPMLPEIVADLKAQGLAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFR 560
            + R E  KAD  +  +D  Q  H +
Sbjct: 321 AKYRFETLKADRALVFSDTRQSQHMQ 346



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 191/347 (55%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ R+LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDSVVRVLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+ +D DE+F ++A   VV LQ  D   +  W+ + +++ +  Q  Y+RLNVTLTE 
Sbjct: 194 RTAKEHYDSDEVFAEKARNYVVKLQSGDDYCRTMWKKLVNITMQQNQHNYNRLNVTLTEN 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   + ++V  L+ +                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPEIVADLKAQGLAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+   ++   FG++
Sbjct: 314 TTTDIAAAKYRFETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLEHHNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   + +KN   +LT  E     +AVA G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEAVERAEKLIAEKN--PDLTACEKQAVVEAVAIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           Y+DLS NR  DYVF +D ML   GNTA Y+ YAYTR+ SI   AGI+
Sbjct: 431 YSDLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRVRSIFSRAGID 477



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 105/178 (58%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ +LT  E     +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDLTACEKQAVVEAVAIGAVKYSDLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   AGI+   L     +  + L  EKE  LA  LL+  + + +V +D   H LC+YL
Sbjct: 468  RSIFSRAGIDPNSL-----TANIVLIDEKERNLAIKLLQFEEAVTVVAKDGTPHVLCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY+ C  +  +AE  IK     RL LA  TAK +K+  D+L I+TV KM
Sbjct: 523  YELAGIFSSFYEACPIL--NAEESIK---QSRLKLAHLTAKTLKQGLDLLGIKTVEKM 575



 Score = 59.7 bits (143), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +          N  L  + +K+E A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----LNPREFAQKVVD--------NVDLNGIAEKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL+  +  +Q ++          LN+   V+VD+SSPN+A++      HL S I
Sbjct: 82  FINIFLAPTWLAQQTENAFSGDKLGINLNQAQTVVVDYSSPNVAKE--MHVGHLRSTI 137


>gi|260772372|ref|ZP_05881288.1| arginyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260611511|gb|EEX36714.1| arginyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 577

 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 216/392 (55%), Gaps = 46/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----MNPREFAQKVIDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIK------DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FLS  +  +Q +       + VN  +P T      ++VD+S+PN+AKEMHVGHLRS
Sbjct: 82  FINIFLSETFLAQQAELALADAHLGVNKAEPQT------IVVDYSAPNVAKEMHVGHLRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+         S  +ADL+AFY+
Sbjct: 136 TIIGDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQQQSGEVSMELADLEAFYR 195

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-- 474
           ESK  +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+L+   
Sbjct: 196 ESKTLYDEDEEFAAKARNYVVKLQSGDAFCLEMWKKLVDVTMIQNQQNYDRLNVSLSRDN 255

Query: 475 -RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   +  +V  L++KG+ + DDG ++++ +   ++   PM ++  K DGGF Y 
Sbjct: 256 VMGESMYNDMLPGIVADLKEKGIAQEDDGAQVVFLDEYKNKDGEPMGVIIQKRDGGFLYT 315

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H
Sbjct: 316 TTDIACAKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPEHVSLEHH 368

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 369 A------FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/350 (38%), Positives = 187/350 (53%), Gaps = 53/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+         S  +ADL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQQQSGEVSMELADLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESK  +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+L+  
Sbjct: 195 RESKTLYDEDEEFAAKARNYVVKLQSGDAFCLEMWKKLVDVTMIQNQQNYDRLNVSLSRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPGIVADLKEKGIAQEDDGAQVVFLDEYKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PEHVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   +LT  E +     VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAQVRAAALIEAKN--PDLTAEEKTSIATTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI   AGI+ ++
Sbjct: 432 YADLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGISMDE 481



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 101/179 (56%), Gaps = 11/179 (6%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ +LT  E +     VA   +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 409  KNPDLTAEEKTSIATTVAMAAVKYADLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 468

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            ASI   AGI+ ++L     +  + +  EKE AL   LL+  + +  V R+   H +C YL
Sbjct: 469  ASIFAKAGISMDEL-----TGQIIIGEEKEKALIAKLLQFEEAVQAVAREGQPHIMCSYL 523

Query: 1062 YDISTAFSEFYDNC-YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++++  FS FY+ C   +  + E K       RL LA  TAK +K+  D+L I T+ +M
Sbjct: 524  FELAGQFSSFYEACPILVASNEESK-----QSRLKLAALTAKTIKQGLDLLGINTLERM 577



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 27/124 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----MNPREFAQKVIDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMK------DIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+FLS  +  +Q +       + VN  +P T      ++VD+S+PN+A++      HL
Sbjct: 82  FINIFLSETFLAQQAELALADAHLGVNKAEPQT------IVVDYSAPNVAKE--MHVGHL 133

Query: 161 PSQI 164
            S I
Sbjct: 134 RSTI 137


>gi|28897635|ref|NP_797240.1| arginyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838587|ref|ZP_01991254.1| arginyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|260365999|ref|ZP_05778484.1| arginine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|260878212|ref|ZP_05890567.1| arginine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|260895648|ref|ZP_05904144.1| arginine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|31076998|sp|Q87RD6.1|SYR_VIBPA RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|28805847|dbj|BAC59124.1| arginyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748005|gb|EDM58864.1| arginyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|308088188|gb|EFO37883.1| arginine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|308090109|gb|EFO39804.1| arginine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308111274|gb|EFO48814.1| arginine--tRNA ligase [Vibrio parahaemolyticus K5030]
          Length = 577

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 210/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +        +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQADAALADSRLGVAAEEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   DDG ++++ E     D  ++ + + K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/353 (38%), Positives = 188/353 (53%), Gaps = 57/353 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+LT     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLTRDDVMGESMYNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E  +  + 
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELDAEEKEKISKT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG+
Sbjct: 425 VAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGV 477



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E  +  + VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELDAEEKEKISKTVAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG+  ++L+       + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVAMDELQ-----GDIQITDEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIETLERM 577



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +        +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQADAALADSRLGVAAEEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|441502154|ref|ZP_20984165.1| Arginyl-tRNA synthetase [Photobacterium sp. AK15]
 gi|441429901|gb|ELR67352.1| Arginyl-tRNA synthetase [Photobacterium sp. AK15]
          Length = 576

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 219/386 (56%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVIDVL--------DLDGIAEKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS+ +  E+ +  + +        ++  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSKTWLAERAEAALADERLGVAKEEQKTIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH VVR NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEHLGHKVVRANHIGDWGTQFGMLIANLERVQKESGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DED  F + A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDAEFAEHARNYVVKLQGGDEYCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDNVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L++KGL   DDG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPGIVADLKEKGLAVEDDGAQVVFLDEYKNKDGEPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R  +Y+  +V   +H      
Sbjct: 322 AKYRYEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKADYVPEEVTLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/354 (37%), Positives = 187/354 (52%), Gaps = 53/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH VVR NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEHLGHKVVRANHIGDWGTQFGMLIANLERVQKESGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DED  F + A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDAEFAEHARNYVVKLQGGDEYCAEMWKKLVDVTMIQNQRNYDRLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPGIVADLKEKGLAVEDDGAQVVFLDEYKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KA  + P +  ++   FG++
Sbjct: 315 TTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKADYV-PEEVTLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL   E +   + VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAEERAAKLIEQKN--PELDAEEKANIAKTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + AG+   D   P
Sbjct: 432 YADLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGVEQADLTHP 485



 Score =  129 bits (325), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ EL   E +   + VA   +KYADLS +R  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 407  EQKNPELDAEEKANIAKTVAMAAVKYADLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI + AG+   DL     + PV +  EKE AL  TLL+  + +  V R+   H +C 
Sbjct: 467  RVASIFKRAGVEQADL-----THPVVINEEKEQALLSTLLQFEEAVQTVAREGHPHVMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+  D+L I T+ +M
Sbjct: 522  YLFELAGKFSSFYEACPILNAEEE-----VKQSRLKLALLTAKTIKQGLDLLGIETLERM 576



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVIDVL--------DLDGIAEKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS+ +  E+ +  + +        ++  ++VD+S+PN+A++      HL S I
Sbjct: 82  FINIFLSKTWLAERAEAALADERLGVAKEEQKTIVVDYSAPNVAKE--MHVGHLRSTI 137


>gi|375264813|ref|YP_005022256.1| arginyl-tRNA synthetase [Vibrio sp. EJY3]
 gi|369840137|gb|AEX21281.1| arginyl-tRNA synthetase [Vibrio sp. EJY3]
          Length = 577

 Score =  240 bits (612), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 213/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +        +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQADAALADSRLGVAEEEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTREDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + ++V  L+++GL   DDG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKEQGLAVEDDGAQVVFLDEYKNKDGEPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  A+ ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELGANRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 206/386 (53%), Gaps = 57/386 (14%)

Query: 532 LAAIRQRIEEEKADWIVY---VTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           LA  R  + EE+A  IV      ++ + +H   L  STIIGD + R LE+LGH V+R NH
Sbjct: 100 LADSRLGVAEEEAQTIVADYSAPNVAKEMHVGHLR-STIIGDAVVRTLEFLGHKVIRANH 158

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 648
           +GDWGTQFGMLIA+L+    +    S  +ADL+AFY+ESKK +DEDE F  +A   VV L
Sbjct: 159 IGDWGTQFGMLIANLERVQQESGEVSMELADLEAFYRESKKLYDEDEEFAVKARNYVVKL 218

Query: 649 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG- 704
           Q  D    + W+ + DV+    Q+ YDRLNV+LT     GES Y   + ++V  L+++G 
Sbjct: 219 QSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTREDVMGESMYNDMLPKIVADLKEQGL 278

Query: 705 ---------------------------------------NLSLTK----KLG---IVYVT 718
                                                  +++  K    +LG   ++Y  
Sbjct: 279 AVEDDGAQVVFLDEYKNKDGEPMGVIVQKRDGGFLYTTTDIACAKYRYEELGANRVLYFI 338

Query: 719 DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDE 778
           D  Q  H        +KAG + P    ++   FG++LG+D K FKTR+G TV+L++LLDE
Sbjct: 339 DSRQHQHLMQAWTIVRKAGYV-PESVSLEHHAFGMMLGKDGKPFKTRAGGTVRLADLLDE 397

Query: 779 GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 838
              R+   ++ KN   EL   E  +  + VA   +KY+DLS +R  DYVF +D ML   G
Sbjct: 398 AEVRAAQLIESKN--PELDAEEKEKISKTVAMAAVKYSDLSKHRTTDYVFDWDNMLAFEG 455

Query: 839 NTAVYLLYAYTRIASIARTAGINSED 864
           NTA Y+ YAYTR+ASI   AG+  +D
Sbjct: 456 NTAPYMQYAYTRVASIFAKAGVAMDD 481



 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E  +  + VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELDAEEKEKISKTVAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG+  +DL+   Q T      EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVAMDDLQGDIQVT-----DEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIETLERM 577



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +        +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQADAALADSRLGVAEEEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|407692986|ref|YP_006817775.1| arginyl-tRNA ligase [Actinobacillus suis H91-0380]
 gi|407389043|gb|AFU19536.1| arginyl-tRNA ligase [Actinobacillus suis H91-0380]
          Length = 575

 Score =  240 bits (612), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 144/372 (38%), Positives = 212/372 (56%), Gaps = 42/372 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHK-----FGDFQCNDAMALCKIF 259
           M+++  LSD    A+  A  E         S  E  V +     FGD+Q N AM   K  
Sbjct: 1   MNIQQILSDKIKQAMIAAGAE---------SNVEPLVRQSGKPEFGDYQANGAMGAAKKL 51

Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
                  NP + AQ I          N  L  + DK+E+A PGF+N+FL++ +   Q  +
Sbjct: 52  G-----MNPREFAQKILD--------NADLNAIADKLEIAGPGFINIFLNQAWLANQASE 98

Query: 320 II--VN-GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 376
            +  VN G++  T N +  +++D+SSPN+AKEMHVGHLRSTIIGD + R LE+LG+ V+R
Sbjct: 99  ALQAVNFGIK--TANPQ-TIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNKVIR 155

Query: 377 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 436
            NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K+ +D DE+F ++A   V
Sbjct: 156 ANHVGDWGTQFGMLIAYLE-KMENEHASQMELSDLEAFYRAAKEHYDSDEVFAEKARNYV 214

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEK 493
           V LQ  D   +  W+ + D++    Q+ YDRLNVTL+E+   GES Y   + ++V  L+ 
Sbjct: 215 VKLQGGDEYCRTMWKKLVDITMHHNQENYDRLNVTLSEKNVMGESLYNPMLPEIVADLKA 274

Query: 494 KGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIV 548
           KGL   DDG  +++      +D   + + + K DGGF Y T+D+AA + R E   AD ++
Sbjct: 275 KGLAVEDDGALVVFLDEFKNKDGDLMGVIVQKKDGGFLYTTTDIAAAKYRYETLNADRVL 334

Query: 549 YVTDLGQGVHFR 560
             +D  Q  H +
Sbjct: 335 VFSDSRQAQHMQ 346



 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/354 (39%), Positives = 195/354 (55%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHASQMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D DE+F ++A   VV LQ  D   +  W+ + D++    Q+ YDRL
Sbjct: 187 SDLEAFYRAAKEHYDSDEVFAEKARNYVVKLQGGDEYCRTMWKKLVDITMHHNQENYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTL+E+   GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLSEKNVMGESLYNPMLPEIVADLKAKGLAVEDDGALVVFLDEFKNKDGDLMGVIVQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++  +D  Q  H +      +KAG + P    ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLNADRVLVFSDSRQAQHMQQAWLITRKAGYV-PENFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKL +LLDE + R+ DKL  + R T+LT  E +   +A
Sbjct: 366 HPFFGMMLGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLISE-RSTDLTAEEKAAVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           VA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   AGI+
Sbjct: 424 VAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFNRAGID 477



 Score =  139 bits (351), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 106/178 (59%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T+LT  E +   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RSTDLTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   AGI+   L     +  ++L  +KE ALA  LL+  + L  V +D   H LC+YL
Sbjct: 468  RSIFNRAGIDVNGL-----NGEINLTEDKERALAVKLLQFEEALNGVAKDGMPHILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++ AFS FY+ C  +  +     + V   RL LA  TAK +K+  D+L I+T+ KM
Sbjct: 523  YELAGAFSSFYEACPMLNAE-----ENVKNSRLRLAALTAKTLKQGLDLLGIKTIEKM 575



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 35/164 (21%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHK-----FGDFQCNDAMALCKIF 63
           M+++  LSD    A+  A  E         S  E  V +     FGD+Q N AM   K  
Sbjct: 1   MNIQQILSDKIKQAMIAAGAE---------SNVEPLVRQSGKPEFGDYQANGAMGAAKKL 51

Query: 64  KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
                  NP + AQ I          N  L  + DK+E A PGF+N+FL++ +   Q  +
Sbjct: 52  G-----MNPREFAQKILD--------NADLNAIADKLEIAGPGFINIFLNQAWLANQASE 98

Query: 124 II--VN-GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
            +  VN G++  T N +  +++D+SSPN+A++      HL S I
Sbjct: 99  ALQAVNFGIK--TANPQ-TIVIDYSSPNVAKE--MHVGHLRSTI 137


>gi|156103177|ref|XP_001617281.1| arginyl-tRNA synthetase [Plasmodium vivax Sal-1]
 gi|148806155|gb|EDL47554.1| arginyl-tRNA synthetase, putative [Plasmodium vivax]
          Length = 591

 Score =  240 bits (612), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 212/364 (58%), Gaps = 25/364 (6%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  VF H++Q  FP + ++   V   N K    FG FQCN+A+    IFK  G++ N  +
Sbjct: 11  IKQVFQHSIQKCFPSISEEVV-VTYANAK----FGHFQCNNAL---NIFKKYGKELN-VE 61

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR---------VYAGEQIK-DI 320
            AQ ++ ++   ++ N       ++I+ +  GF+ V LS+         +Y   QI   +
Sbjct: 62  NAQKLSQMIIENISEN-----FFEEIKSSPQGFITVKLSKEYIEKSLLKLYKNNQIDISV 116

Query: 321 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
            ++ V+        RVLVDFSSPNIAKEMHVGHLRSTI+GD+I R+ E+L    +R+NH+
Sbjct: 117 DIDEVKGGNDGDYKRVLVDFSSPNIAKEMHVGHLRSTILGDSICRIFEFLKVQTIRVNHI 176

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGM+I H+    P++    P + +L + Y+E+KK +D D+ F+K +    + LQ
Sbjct: 177 GDWGTQFGMIINHIVSTHPNFKENMPELTNLTSLYQEAKKLYDADKEFEKSSKNYAIKLQ 236

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELD 500
             D D    W+ +C+ S+++F KIY  L++ L   GES Y   +   +  L+ + LL  +
Sbjct: 237 NNDEDCLFVWKKLCESSKKEFDKIYKILDIKLEYVGESHYISMISPALQMLKDEQLLS-N 295

Query: 501 DGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
            G  I +  +  ++P+ + KS+GG+ YD++D+AAI  R++   +D ++YVTD GQ  HF 
Sbjct: 296 VGDAICYQSENFNVPLFLQKSNGGYGYDSTDVAAIHYRLKVLNSDCLIYVTDNGQLTHFE 355

Query: 561 LLEE 564
            + E
Sbjct: 356 TIFE 359



 Score =  217 bits (552), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 186/347 (53%), Gaps = 48/347 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STI+GD+I R+ E+L    +R+NH+GDWGTQFGM+I H+    P++    P + +L + Y
Sbjct: 152 STILGDSICRIFEFLKVQTIRVNHIGDWGTQFGMIINHIVSTHPNFKENMPELTNLTSLY 211

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +D D+ F+K +    + LQ  D D    W+ +C+ S+++F KIY  L++ L   
Sbjct: 212 QEAKKLYDADKEFEKSSKNYAIKLQNNDEDCLFVWKKLCESSKKEFDKIYKILDIKLEYV 271

Query: 685 GESFYQKHM---------EQL----------------VPYLEKKGN-------------- 705
           GES Y   +         EQL                VP   +K N              
Sbjct: 272 GESHYISMISPALQMLKDEQLLSNVGDAICYQSENFNVPLFLQKSNGGYGYDSTDVAAIH 331

Query: 706 --LSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
             L +     ++YVTD GQ  HF  + E AKKA   + N T++  VGFG+VL  D KKFK
Sbjct: 332 YRLKVLNSDCLIYVTDNGQLTHFETIFELAKKAKWASEN-TKLVHVGFGLVLNADNKKFK 390

Query: 764 TRSGDTVKLSELLDEGLRRSLD------KLKDKNRHTELTPTELSEAQQAVAYGCIKYAD 817
           TRSG  +KL  L++EG  R+        +LK +   T     ++ +  + +    IKY D
Sbjct: 391 TRSGTNIKLINLINEGTERAKKDLLERIQLKSEEEKTYFKGIDIDQLSEELCVSAIKYFD 450

Query: 818 LSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           L  +RN DY FS+D ML+ +GNT +Y++YAY+R+ SI R   ++ ++
Sbjct: 451 LKQHRNTDYKFSYDNMLNVKGNTGLYIIYAYSRMCSIFRKCSVDMDE 497



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 11/184 (5%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            +LK +   T     ++ +  + +    IKY DL  +RN DY FS+D ML+ +GNT +Y++
Sbjct: 419  QLKSEEEKTYFKGIDIDQLSEELCVSAIKYFDLKQHRNTDYKFSYDNMLNVKGNTGLYII 478

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YAY+R+ SI R   ++ ++L        ++L    E  L   +L+  DV   V +++ +H
Sbjct: 479  YAYSRMCSIFRKCSVDMDEL----SKDELNLVSPYEVNLGLHILKFPDVFYFVLKNMLIH 534

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1115
             L EY YD++T F+ FY+NC  +  + E   KT    RL+L      +++ C  +L ++ 
Sbjct: 535  KLAEYTYDLTTTFTAFYENCKVLNSENE---KT----RLILCAIAKSLLQICLGLLGMKA 587

Query: 1116 VHKM 1119
            + K+
Sbjct: 588  IEKL 591



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 24/148 (16%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  VF H++Q  FP + ++   V   N K    FG FQCN+A+    IFK  G++ N  +
Sbjct: 11  IKQVFQHSIQKCFPSISEEVV-VTYANAK----FGHFQCNNAL---NIFKKYGKELN-VE 61

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG------ 128
            AQ ++ ++   ++ N       ++I+++  GF+ V LS+ Y  + +  +  N       
Sbjct: 62  NAQKLSQMIIENISEN-----FFEEIKSSPQGFITVKLSKEYIEKSLLKLYKNNQIDISV 116

Query: 129 ----VQPPTLNKKLRVLVDFSSPNIARK 152
               V+        RVLVDFSSPNIA++
Sbjct: 117 DIDEVKGGNDGDYKRVLVDFSSPNIAKE 144


>gi|375130343|ref|YP_004992443.1| arginyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
 gi|315179517|gb|ADT86431.1| arginyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 577

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 212/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVIDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +         +  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQADAALADERLGVAKEAQQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DED  F +RA   VV LQ  D      W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDAEFAERARNYVVKLQGGDAFCLDMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L++KGL + DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPGIVADLKEKGLAQEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 322 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPEEVTLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/350 (38%), Positives = 188/350 (53%), Gaps = 53/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DED  F +RA   VV LQ  D      W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDAEFAERARNYVVKLQGGDAFCLDMWKKLVDVTMIQNQRNYDRLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + K+ G    
Sbjct: 255 DVMGESMYNDMLPGIVADLKEKGLAQEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PEEVTLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   +L   E ++    VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PDLGADEKADIATTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG++ ++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGVSPDN 481



 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 105/180 (58%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ +L   E ++    VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPDLGADEKADIATTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG++ ++L     +  + +  EKE AL   LL+  + +  V+R+   H LC 
Sbjct: 467  RVASIFAKAGVSPDNL-----TGDIKITEEKEKALIAKLLQFEEAVQSVSREGQPHILCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L I+T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILIAEDE----SVKQSRLKLAALTAKTIKQGLSLLGIKTLERM 577



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVIDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +         +  ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQADAALADERLGVAKEAQQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|323499566|ref|ZP_08104536.1| arginyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323315439|gb|EGA68480.1| arginyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 577

 Score =  239 bits (611), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +         +  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQADAALADTRLGVAEQAQQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + D++    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQGGDEYCAEMWKKLVDITMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L++KG+ + DDG ++++      +D   + + I K DGGF Y T+D+A 
Sbjct: 262 YNDMLPPIVADLKEKGIAQEDDGAQVVFLDEYKNKDGDPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 322 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPEEVTLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 189/354 (53%), Gaps = 57/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+AFY+ESKK +DEDE F  +A   VV LQ  D    + W+ + D++    Q+ YDRL
Sbjct: 188 ADLEAFYRESKKLYDEDEEFAVKARNYVVKLQGGDEYCAEMWKKLVDITMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   +  +V  L++KG                         + + K
Sbjct: 248 NVSLTRDDVMGESMYNDMLPPIVADLKEKGIAQEDDGAQVVFLDEYKNKDGDPMGVIIQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P +  ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PEEVTLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D + FKTR+G TV+L++LLDE   R++  ++ KN    L   E ++    
Sbjct: 367 HHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAEERAIKLIESKN--PSLETEEKTKIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR++SI   AGI+
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVSSIFAKAGIS 478



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 105/188 (55%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R++  ++ KN    L   E ++    VA   +KYADLS +R  DYVF +D ML   GNTA
Sbjct: 401  RAIKLIESKN--PSLETEEKTKIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTA 458

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR++SI   AGI+ + L     +  + +  EKE AL   LL+  + ++ V R+
Sbjct: 459  PYMQYAYTRVSSIFAKAGISVDQL-----AGDIKVTEEKEKALIAKLLQFEEAVLSVARE 513

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L
Sbjct: 514  GQPHIMCSYLFELAGQFSSFYEACPILNSEDE----SVKQSRLKLAALTAKTIKQGLSLL 569

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 570  GIETLERM 577



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +         +  ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQADAALADTRLGVAEQAQQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|27363628|ref|NP_759156.1| arginyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|31077005|sp|Q8DFR1.1|SYR_VIBVU RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|27359744|gb|AAO08683.1| arginyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 577

 Score =  239 bits (611), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 170/494 (34%), Positives = 252/494 (51%), Gaps = 55/494 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +        +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALADPRLGVASEEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+L+     GES 
Sbjct: 202 DEDEEFAVKARGYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLSRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL-------QAFYKESKK-RFDEDEIFKKRAYQCVV 646
            FGM++      F      +  +ADL        A   ESK     EDE   K+A    V
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKNPELAEDE---KKAIANTV 425

Query: 647 ALQRFDPDYKKAWEMICDVSR-RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGN 705
           A+         A     D+S+ R    ++D  N+   E   + Y ++    V  +  K  
Sbjct: 426 AM---------AAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAG 476

Query: 706 LSLTKKLGIVYVTD 719
           +S+    G + +TD
Sbjct: 477 VSMDDLQGEIKITD 490



 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 189/357 (52%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARGYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+L+     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLSRDDVMGESMYNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEPMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E       
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELAEDEKKAIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++ +D
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVSMDD 481



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E       VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAEDEKKAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++ +DL+       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVSMDDLQ-----GEIKITDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +        +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALADPRLGVASEEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|416892926|ref|ZP_11924250.1| arginyl-tRNA synthetase [Aggregatibacter aphrophilus ATCC 33389]
 gi|347814624|gb|EGY31273.1| arginyl-tRNA synthetase [Aggregatibacter aphrophilus ATCC 33389]
          Length = 577

 Score =  239 bits (610), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 157/428 (36%), Positives = 229/428 (53%), Gaps = 47/428 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+    A+  A    G  +   A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQSILSEKIKQAMLAA----GADSQCEALVRQSGKVQFGDYQANGIMPAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ + +           L  + +K E+A PGF+N+FL   +  E I     N 
Sbjct: 53  -INPREFAQLVLA--------KAELQDITEKTEIAGPGFINIFLKDGWLAENIG----NA 99

Query: 325 VQPPTLN----KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
           V+ P L      K  V+VD+SSPN+AKEMHVGHLRSTIIGD + R LE+LG+ V+R NHV
Sbjct: 100 VKDPKLGIHHQDKQTVVVDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNHVIRANHV 159

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGMLIA+L+ K  +       + DL+AFY+ +KK +DED IF ++A   VV LQ
Sbjct: 160 GDWGTQFGMLIAYLE-KMENEHASEMELCDLEAFYRAAKKHYDEDPIFAEKARNYVVKLQ 218

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLL 497
             D   +  W+ +  ++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL 
Sbjct: 219 SGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPGIVEDLKKQGLA 278

Query: 498 ELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
             DDG  +++      +D GS+ + + K DGGF Y T+D+AA + R E  KA+  +  +D
Sbjct: 279 VEDDGAWVVYLDEFKNKDGGSMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSD 338

Query: 553 LGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT 612
             Q  H   ++++ +    I+R   Y+  D  +L H       FGM++      F     
Sbjct: 339 TRQSQH---MQQAWL----ITRKAGYV-PDSFQLEH-----KNFGMMLGKDGKPFKTRSG 385

Query: 613 KSPPIADL 620
            +  +ADL
Sbjct: 386 DTVKLADL 393



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 196/365 (53%), Gaps = 54/365 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       + DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELCDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED IF ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLTE+
Sbjct: 194 RAAKKHYDEDPIFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPGIVEDLKKQGLAVEDDGAWVVYLDEFKNKDGGSMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  +++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLEHKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSGDTVKL++LLDE + R+   +  K+  T L+  E ++  +AV  G +K
Sbjct: 373 LGKDGKPFKTRSGDTVKLADLLDEAIERAGVLISQKS--TALSDQEKADVIEAVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + I   +  +   S ++
Sbjct: 431 YADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSQIALSEVEQAQLSITD 490

Query: 875 VEDRC 879
            ++R 
Sbjct: 491 EKERA 495



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSDQEKADVIEAVGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + I   ++  A     +S+  EKE ALA  LL+  + + +V +D   H LC YL
Sbjct: 468  RSIFNRSQIALSEVEQA----QLSITDEKERALAIKLLQFEEAIQIVAKDGTPHVLCTYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + +     V   RL LA  T + +K+   +L I+TV KM
Sbjct: 524  YELAGVFSSFYEHCPILNNEDQ----QVKLSRLKLALLTERTLKQGLGLLGIKTVEKM 577



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 27/160 (16%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+    A+  A    G  +   A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQSILSEKIKQAMLAA----GADSQCEALVRQSGKVQFGDYQANGIMPAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ + +           L  + +K E A PGF+N+FL   +  E     I N 
Sbjct: 53  -INPREFAQLVLA--------KAELQDITEKTEIAGPGFINIFLKDGWLAEN----IGNA 99

Query: 129 VQPPTLN----KKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           V+ P L      K  V+VD+SSPN+A++      HL S I
Sbjct: 100 VKDPKLGIHHQDKQTVVVDYSSPNVAKE--MHVGHLRSTI 137


>gi|13431882|sp|P57851.1|SYR_PASMU RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|12720817|gb|AAK02635.1| ArgS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 563

 Score =  239 bits (610), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 151/406 (37%), Positives = 227/406 (55%), Gaps = 43/406 (10%)

Query: 227 GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATN 286
           G  T S A   +    +FGD+Q N  MA  K        +NP + AQ +   +       
Sbjct: 5   GADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPREFAQQVIEQL------- 52

Query: 287 PSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN----GVQPPTLNKKLRVLVDFSS 342
             L+++ +KIE+A PGF+N+FL + +  EQI  + VN    G+Q         V+ D+SS
Sbjct: 53  -DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQATETQT---VVADYSS 107

Query: 343 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL 402
           PN+AKEMHVGHLRSTIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +  
Sbjct: 108 PNVAKEMHVGHLRSTIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KVENES 166

Query: 403 TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQ 462
                ++DL+AFY+ +K+ +D D +F ++A   VV LQ  D   +  W+ + D++ +  Q
Sbjct: 167 ASEMELSDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMQQNQ 226

Query: 463 KIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPM 516
             YDRLNVTLTE+   GES Y   +  +V  L+++GL   D+G  +++ ++   +   PM
Sbjct: 227 HNYDRLNVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGAFVVYLDEFKNKEGEPM 286

Query: 517 TIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISR 574
            ++  K DGGF Y T+D+AA + R E  KAD  +  +D  Q  H   ++++ +    I+R
Sbjct: 287 GVIVQKKDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQH---MQQAWL----ITR 339

Query: 575 LLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
              Y+  D  +L H       FGM++      F      +  +ADL
Sbjct: 340 KAGYV-PDSFQLEH-----KNFGMMLGKDGKPFKTRTGGTVKLADL 379



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/360 (38%), Positives = 196/360 (54%), Gaps = 58/360 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 118 HLR----STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KVENESASEMEL 172

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D D +F ++A   VV LQ  D   +  W+ + D++ +  Q  YDRL
Sbjct: 173 SDLEAFYRAAKEHYDSDPVFAEKARNYVVKLQSGDEYCRTMWKKLVDITMQQNQHNYDRL 232

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+++                         G +   
Sbjct: 233 NVTLTEKDVMGESLYNPMLSDIVADLKQQGLAVEDEGAFVVYLDEFKNKEGEPMGVIVQK 292

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+  +++
Sbjct: 293 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLE 351

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKL++LLDE + R+   +++K+  T L+  E +   +A
Sbjct: 352 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAVERATQLIQEKS--TALSAQEKAAVIEA 409

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           VA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + +N +D  E
Sbjct: 410 VAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSELNEQDLSE 469



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 106/180 (58%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + T L+  E +   +AVA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 392  QEKSTALSAQEKAAVIEAVAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYT 451

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   + +N +DL      +PV L +EKE  LA  LL+  + + +V ++   H LC 
Sbjct: 452  RIRSIFNRSELNEQDL----SESPVVLSNEKERLLAIKLLQFEEAIQIVAKEGTPHVLCT 507

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY+++  FS FY++C  +  + E     +   RL LA  T K +K+  D+L I+TV KM
Sbjct: 508  YLYELAGVFSSFYEHCPILNNEDE----QIKRSRLKLALLTEKTLKQGLDLLGIKTVDKM 563



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 23/138 (16%)

Query: 31  GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATN 90
           G  T S A   +    +FGD+Q N  MA  K        +NP + AQ +   +       
Sbjct: 5   GADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPREFAQQVIEQL------- 52

Query: 91  PSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN----GVQPPTLNKKLRVLVDFSS 146
             L+++ +KIE A PGF+N+FL + +  EQ+  + VN    G+Q     +   V+ D+SS
Sbjct: 53  -DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQA---TETQTVVADYSS 107

Query: 147 PNIARKGGFLYPHLPSQI 164
           PN+A++      HL S I
Sbjct: 108 PNVAKE--MHVGHLRSTI 123


>gi|451975389|ref|ZP_21926580.1| arginyl-tRNA synthetase [Vibrio alginolyticus E0666]
 gi|451930701|gb|EMD78404.1| arginyl-tRNA synthetase [Vibrio alginolyticus E0666]
          Length = 577

 Score =  239 bits (610), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +        +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQADAALADERLGVAKEEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARNYVVRLQSGDEYCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + ++V  L+++GL   DDG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKEQGLAVEDDGAQVVFLDEYKNKDGEPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELSADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/353 (38%), Positives = 187/353 (52%), Gaps = 57/353 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARNYVVRLQSGDEYCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   + ++V  L+++G                         + + K
Sbjct: 248 NVSLTRDDVMGESMYNDMLPKIVADLKEQGLAVEDDGAQVVFLDEYKNKDGEPMGVIVQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELSADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E  +  + 
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELDAEEKEKISKT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG+
Sbjct: 425 VAIAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGV 477



 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E  +  + VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELDAEEKEKISKTVAIAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG+  + L+       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVAMDALQ-----GDIKITDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +        +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQADAALADERLGVAKEEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|226939931|ref|YP_002795004.1| arginyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|254782968|sp|C1D5W4.1|SYR_LARHH RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|226714857|gb|ACO73995.1| Syr [Laribacter hongkongensis HLHK9]
          Length = 573

 Score =  239 bits (610), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 146/366 (39%), Positives = 209/366 (57%), Gaps = 36/366 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGDFQ N  MA  K       K NP ++AQ +   +         LA +  KIE+A PG
Sbjct: 34  EFGDFQANGVMAAAK-----QRKMNPRELAQQVIDKL--------DLAGIASKIEIAGPG 80

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L+  +  +++  ++ +   GV+  ++ +  RV+V++SSPN+AKEMHVGHLRSTII
Sbjct: 81  FINITLAPDFLAKRLDTVLDDARLGVR--SVTEPQRVMVEYSSPNLAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GDT++R++E+LG+++VR NHVGDWGTQFGML A+L +           ++DL+ FY+ +K
Sbjct: 139 GDTLARVVEFLGNNMVRGNHVGDWGTQFGMLTAYLVET-RQAGKADLELSDLETFYRNAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
            RFDED +F   A   VV LQ  D D  K WE   DVS    + +Y +L V LT    RG
Sbjct: 198 IRFDEDPVFADTARNYVVRLQGGDADVLKLWEQFVDVSLAHCEAVYRKLGVGLTRADVRG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSD 531
           ES Y   +  +V  L  K LL  DDG K+++       D   + + + K DGGF Y T+D
Sbjct: 258 ESAYNDDLPVIVDELAAKNLLSEDDGAKVVYLDEFRNHDGDPMGVIVQKKDGGFLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           L A+R R +E   D ++YV D  Q  HF+ +        TI R   +   + + L HVG 
Sbjct: 318 LGAVRYRHKELNLDRVIYVVDARQSQHFQQMF-------TICRKAGF-APEAMSLEHVG- 368

Query: 592 WGTQFG 597
           +GT  G
Sbjct: 369 FGTMMG 374



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/342 (40%), Positives = 181/342 (52%), Gaps = 54/342 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDT++R++E+LG+++VR NHVGDWGTQFGML A+L +           ++DL+ FY
Sbjct: 135 STIIGDTLARVVEFLGNNMVRGNHVGDWGTQFGMLTAYLVET-RQAGKADLELSDLETFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K RFDED +F   A   VV LQ  D D  K WE   DVS    + +Y +L V LT  
Sbjct: 194 RNAKIRFDEDPVFADTARNYVVRLQGGDADVLKLWEQFVDVSLAHCEAVYRKLGVGLTRA 253

Query: 684 --RGESFYQKHMEQLVPYLEKK----------------------------------GNLS 707
             RGES Y   +  +V  L  K                                  G L 
Sbjct: 254 DVRGESAYNDDLPVIVDELAAKNLLSEDDGAKVVYLDEFRNHDGDPMGVIVQKKDGGFLY 313

Query: 708 LTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T  LG             ++YV D  Q  HF+ +    +KAG   P    ++ VGFG +
Sbjct: 314 TTTDLGAVRYRHKELNLDRVIYVVDARQSQHFQQMFTICRKAG-FAPEAMSLEHVGFGTM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSG TVKL ELLDE   R+   + +KN   +L   E  +   AV  G +K
Sbjct: 373 MGDDGKPFKTRSGGTVKLIELLDEAEERAYALVSEKN--PDLPEEEKRKIAHAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           YADLS NRN DY+F++D ML   GNTA YL YAYTR+ASI R
Sbjct: 431 YADLSKNRNSDYIFNWDLMLAFEGNTAPYLQYAYTRVASIFR 472



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 92/178 (51%), Gaps = 12/178 (6%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ +L   E  +   AV  G +KYADLS NRN DY+F++D ML   GNTA YL YAYTR+
Sbjct: 408  KNPDLPEEEKRKIAHAVGIGAVKYADLSKNRNSDYIFNWDLMLAFEGNTAPYLQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            ASI R   ++  D      S P+ +    E  LA  L + +DVL  V R    H L +YL
Sbjct: 468  ASIFRK--VDRFD-----ASAPLLITEPAEKQLALMLAQFSDVLNEVARTCFPHLLTQYL 520

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y ++T F  FY+ C  ++ +           RL LA  TA  +K    +L I  +  M
Sbjct: 521  YQVATQFMRFYEACPILKSEG-----ATQASRLKLARITADTLKTGLGLLGIEVLESM 573



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 18/109 (16%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGDFQ N  MA  K       K NP ++AQ +   +         LA +  KIE A PG
Sbjct: 34  EFGDFQANGVMAAAK-----QRKMNPRELAQQVIDKL--------DLAGIASKIEIAGPG 80

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L+  +  +++  ++ +   GV+  ++ +  RV+V++SSPN+A++
Sbjct: 81  FINITLAPDFLAKRLDTVLDDARLGVR--SVTEPQRVMVEYSSPNLAKE 127


>gi|262394871|ref|YP_003286725.1| arginyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262338465|gb|ACY52260.1| arginyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 577

 Score =  239 bits (610), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +        +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQADAALADERLGVAKEEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQSGDEYCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + ++V  L+++GL   DDG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKEQGLAVEDDGAQVVFLDEYKNKDGEPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELSADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/353 (38%), Positives = 187/353 (52%), Gaps = 57/353 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARNYVVKLQSGDEYCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   + ++V  L+++G                         + + K
Sbjct: 248 NVSLTRDDVMGESMYNDMLPKIVADLKEQGLAVEDDGAQVVFLDEYKNKDGEPMGVIVQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELSADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E  +  + 
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELDAEEKEKISKT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG+
Sbjct: 425 VAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGV 477



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E  +  + VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELDAEEKEKISKTVAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG+  + L+       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVAMDALQ-----GDIKITDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +        +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQADAALADERLGVAKEEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|157963591|ref|YP_001503625.1| arginyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|189083549|sp|A8H953.1|SYR_SHEPA RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|157848591|gb|ABV89090.1| arginyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 581

 Score =  239 bits (610), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 134/325 (41%), Positives = 191/325 (58%), Gaps = 22/325 (6%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K        KNP ++AQ         L  N   +  ++K+E+A PGF+
Sbjct: 41  GDFATNLAMMLTK-----AAGKNPRELAQL--------LIDNLPESSHVEKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F+       Q+   + +      L     V+VD+SSPN+AKEMHVGHLRSTIIGD++ 
Sbjct: 88  NFFIDDNALANQLMAALNSDTLGIELPASQTVVVDYSSPNLAKEMHVGHLRSTIIGDSVV 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKKRFD 423
           R LE++GH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K RFD
Sbjct: 148 RALEFMGHKVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAKMELSDLETFYRAAKVRFD 207

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFY 480
           E E F  RA + VVALQ  D    K W    D+S     ++Y+RL V+LT    RGES Y
Sbjct: 208 ESEEFATRARKLVVALQSGDEYCNKLWREFNDISLSHCHELYERLGVSLTRADVRGESAY 267

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAI 535
              + Q+V  L+ +GLL   +G K+++ ++  +     +P+ I K+DGG+ Y TSDLAA+
Sbjct: 268 NSDLAQVVADLDSQGLLSESNGAKVVFQDEFKNKEGEPLPVIIQKADGGYLYATSDLAAM 327

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFR 560
           R R     AD  +Y  DL Q +HF+
Sbjct: 328 RYRSNVLNADRALYFVDLRQALHFQ 352



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 134/345 (38%), Positives = 187/345 (54%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE++GH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRALEFMGHKVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAKMELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE E F  RA + VVALQ  D    K W    D+S     ++Y+RL V+LT 
Sbjct: 199 YRAAKVRFDESEEFATRARKLVVALQSGDEYCNKLWREFNDISLSHCHELYERLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV------------------------- 715
              RGES Y   + Q+V  L+ +G LS +    +V                         
Sbjct: 259 ADVRGESAYNSDLAQVVADLDSQGLLSESNGAKVVFQDEFKNKEGEPLPVIIQKADGGYL 318

Query: 716 ----------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                 Y  DL Q +HF+ + + AK A  +    +  + +GFG 
Sbjct: 319 YATSDLAAMRYRSNVLNADRALYFVDLRQALHFQQVFKLAKTAKFVREEMS-FEHMGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTRSG  VKL +LL E   R+LD ++ KN   ++   EL+E  + V    +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLIDLLKEADIRALDLVRSKN--PDMDEAELAEIARVVGIASV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRASDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 112/188 (59%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+LD ++ KN   ++   EL+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALDLVRSKN--PDMDEAELAEIARVVGIASVKYADLSKNRASDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I + A    +D+ ++     + LEHEKE  L   L +  +V+  +   
Sbjct: 464  PYLLYAYTRVAGIFKRA----QDVDLS--DAKIILEHEKEKDLGTKLAQFGEVMARMVSK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YL++++ AFS FY+ C  +  + E   K+    RLLL++ TAK +K+  ++L
Sbjct: 518  GQPHALCGYLFELAGAFSSFYEACPVLAAETEELKKS----RLLLSQLTAKTLKQGLNLL 573

Query: 1112 NIRTVHKM 1119
             + T+ +M
Sbjct: 574  GLETLERM 581



 Score = 48.1 bits (113), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 15/116 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K        KNP ++AQ         L  N   +  ++K+E A PGF+
Sbjct: 41  GDFATNLAMMLTK-----AAGKNPRELAQL--------LIDNLPESSHVEKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           N F+       Q+   + +      L     V+VD+SSPN+A++      HL S I
Sbjct: 88  NFFIDDNALANQLMAALNSDTLGIELPASQTVVVDYSSPNLAKE--MHVGHLRSTI 141


>gi|238021933|ref|ZP_04602359.1| hypothetical protein GCWU000324_01837 [Kingella oralis ATCC 51147]
 gi|237866547|gb|EEP67589.1| hypothetical protein GCWU000324_01837 [Kingella oralis ATCC 51147]
          Length = 570

 Score =  239 bits (609), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 140/333 (42%), Positives = 196/333 (58%), Gaps = 26/333 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           KFGDFQ N  M   K  K     +NP ++AQ IA +    LA NP    +    EVA PG
Sbjct: 34  KFGDFQINGVMGAAKSLK-----QNPRELAQKIAGL----LAANP----LFTAAEVAGPG 80

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+ L+  +   Q+     + +   T+ K   V++D+SSPN+AKEMHVGHLRS+IIGD+
Sbjct: 81  FINLRLNPEFIAAQLS-AADSRLGVATVAKSKTVVIDYSSPNLAKEMHVGHLRSSIIGDS 139

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           ++R+L +LGH V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K RF
Sbjct: 140 LARVLGFLGHKVIRQNHVGDWGTQFGMLVAYLAEQQQD--DANFRLADLEQFYRNAKVRF 197

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER----GES 478
           DEDE F   A + VV LQ  D      W    D+S +  + +Y++L + L ER    GES
Sbjct: 198 DEDENFANTAREYVVKLQGGDETVLSWWRKFVDISLQHAETVYEKLGL-LLERGDVAGES 256

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   ++ +V  L + GL   D+G K+M+      +D    P  I K DGGF Y T+DLA
Sbjct: 257 SYNDDLQNVVDELLQHGLAVDDNGTKVMFLDELKNQDGDPQPFIIQKQDGGFLYATTDLA 316

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEEST 566
            +R R+    AD I+YV D  Q +HF+ L  +T
Sbjct: 317 CVRHRVRNLHADRILYVVDTRQSLHFQQLFAAT 349



 Score =  234 bits (598), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 199/367 (54%), Gaps = 61/367 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+++R+L +LGH V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 133 SSIIGDSLARVLGFLGHKVIRQNHVGDWGTQFGMLVAYLAEQQQD--DANFRLADLEQFY 190

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDEDE F   A + VV LQ  D      W    D+S +  + +Y++L + L ER
Sbjct: 191 RNAKVRFDEDENFANTAREYVVKLQGGDETVLSWWRKFVDISLQHAETVYEKLGLLL-ER 249

Query: 685 G----ESFYQKHMEQLV-------------------------------PYLEKK---GNL 706
           G    ES Y   ++ +V                               P++ +K   G L
Sbjct: 250 GDVAGESSYNDDLQNVVDELLQHGLAVDDNGTKVMFLDELKNQDGDPQPFIIQKQDGGFL 309

Query: 707 SLTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
             T  L              I+YV D  Q +HF+ L    +KAG L P     +F+GFG 
Sbjct: 310 YATTDLACVRHRVRNLHADRILYVVDTRQSLHFQQLFAATRKAGWL-PENVEAEFIGFGT 368

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           ++G+D K FKTRSGDTVKL ELLDE   R+   +K+KN   EL     ++  +AV  G +
Sbjct: 369 MMGKDGKPFKTRSGDTVKLVELLDEATERATALVKEKN--PELPADTAAQIGRAVGIGAV 426

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP----EPD 869
           KYADLS NRN DY+F ++ ML   GNTA YL YAYTR+ S+ R AG  +E  P    EP 
Sbjct: 427 KYADLSKNRNSDYIFDWENMLSFEGNTAPYLQYAYTRVQSVLRRAGAWNETAPLQIKEPL 486

Query: 870 PSQSEVE 876
             Q  VE
Sbjct: 487 EQQLAVE 493



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL     ++  +AV  G +KYADLS NRN DY+F ++ ML   GNTA YL YAYT
Sbjct: 403  KEKNPELPADTAAQIGRAVGIGAVKYADLSKNRNSDYIFDWENMLSFEGNTAPYLQYAYT 462

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG  +E       + P+ ++   E  LA  LL+  DVL  V      H+L  
Sbjct: 463  RVQSVLRRAGAWNE-------TAPLQIKEPLEQQLAVELLKFEDVLNSVAETSFPHYLAN 515

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++  FS FY+ C  ++  AEG  +     RL LA+ T + +K    +L I  +  M
Sbjct: 516  YLYQLAALFSRFYEACPILK--AEGATRDT---RLQLAKLTGETLKTGLGLLGIEVLDVM 570



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 14/106 (13%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           KFGDFQ N  M   K  K     +NP ++AQ IA +    LA NP    +    E A PG
Sbjct: 34  KFGDFQINGVMGAAKSLK-----QNPRELAQKIAGL----LAANP----LFTAAEVAGPG 80

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L+  +   Q+     + +   T+ K   V++D+SSPN+A++
Sbjct: 81  FINLRLNPEFIAAQLS-AADSRLGVATVAKSKTVVIDYSSPNLAKE 125


>gi|251792745|ref|YP_003007471.1| arginyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|422336289|ref|ZP_16417262.1| arginyl-tRNA synthetase [Aggregatibacter aphrophilus F0387]
 gi|247534138|gb|ACS97384.1| arginyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|353346475|gb|EHB90760.1| arginyl-tRNA synthetase [Aggregatibacter aphrophilus F0387]
          Length = 577

 Score =  239 bits (609), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 205/368 (55%), Gaps = 34/368 (9%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+    A+  A    G  +   A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQSILSEKIKQAMLAA----GADSQCEALVRQSGKVQFGDYQANGIMPAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ + +           L  + +K E+A PGF+N+FL   +  E I     N 
Sbjct: 53  -INPREFAQLVLA--------KAELQDITEKTEIAGPGFINIFLKDGWLAENIG----NA 99

Query: 325 VQPPTLN----KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
           V+ P L      K  V+VD+SSPN+AKEMHVGHLRSTIIGD + R LE+LG+ V+R NHV
Sbjct: 100 VKDPKLGIHHQDKQTVVVDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNHVIRANHV 159

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGMLIA+L+ K  +       + DL+AFY+ +KK +DED IF ++A   VV LQ
Sbjct: 160 GDWGTQFGMLIAYLE-KMENEHASEMELCDLEAFYRAAKKHYDEDPIFAEKARNYVVKLQ 218

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLL 497
             D   +  W+ +  ++ +  Q  YDRLNVTLTE+   GES Y   +  +V  L+K+GL 
Sbjct: 219 SGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPGIVEDLKKQGLA 278

Query: 498 ELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
             DDG  +++      +D GS+ + + K DGGF Y T+D+AA + R E  KA+  +  +D
Sbjct: 279 VEDDGAWVVYLDEFKNKDGGSMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSD 338

Query: 553 LGQGVHFR 560
             Q  H +
Sbjct: 339 TRQSQHMQ 346



 Score =  220 bits (560), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 195/365 (53%), Gaps = 54/365 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       + DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELCDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED IF ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLTE+
Sbjct: 194 RAAKKHYDEDPIFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPGIVEDLKKQGLAVEDDGAWVVYLDEFKNKDGGSMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG   P+  +++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAG-YAPDSFQLEHKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSGDTVKL++LLDE + R+   +  K+  T L+  E ++  +AV  G +K
Sbjct: 373 LGKDGKPFKTRSGDTVKLADLLDEAIERAGVLISQKS--TALSDQEKADVIEAVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + I   +  +   S ++
Sbjct: 431 YADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSQIALSEVEQAQLSITD 490

Query: 875 VEDRC 879
            ++R 
Sbjct: 491 EKERA 495



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSDQEKADVIEAVGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + I   ++  A     +S+  EKE ALA  LL+  + + +V +D   H LC YL
Sbjct: 468  RSIFNRSQIALSEVEQA----QLSITDEKERALAIKLLQFEEAIQIVAKDGTPHVLCTYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + +     V   RL LA  T + +K+   +L I+TV KM
Sbjct: 524  YELAGVFSSFYEHCPILNNEDQ----QVKLSRLKLALLTERTLKQGLGLLGIKTVEKM 577



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 27/160 (16%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+    A+  A    G  +   A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQSILSEKIKQAMLAA----GADSQCEALVRQSGKVQFGDYQANGIMPAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ + +           L  + +K E A PGF+N+FL   +  E     I N 
Sbjct: 53  -INPREFAQLVLA--------KAELQDITEKTEIAGPGFINIFLKDGWLAEN----IGNA 99

Query: 129 VQPPTLN----KKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           V+ P L      K  V+VD+SSPN+A++      HL S I
Sbjct: 100 VKDPKLGIHHQDKQTVVVDYSSPNVAKE--MHVGHLRSTI 137


>gi|290475235|ref|YP_003468121.1| arginine tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289174554|emb|CBJ81348.1| arginine tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 576

 Score =  239 bits (609), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 211/386 (54%), Gaps = 46/386 (11%)

Query: 214 VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 273
           + +  +  A  E G  T S A   +    +FGD+Q N  MA  K          P  +A+
Sbjct: 6   ILSEKISNALIEAGAPTDSEAHVRQSAKAQFGDYQANGVMAAAKKVG-----MPPRQLAE 60

Query: 274 SIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII------VNGVQP 327
            + S +         L  +  KIE+A PGF+N+FL + +    I+  +      +  V+P
Sbjct: 61  KVISQL--------DLQGIASKIEIAGPGFINIFLDKAWIAANIETALKDEKLGITPVEP 112

Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
            T      +++D+S+PN+AK+MHVGHLRSTIIGD  +R LE+LGH V+R NHVGDWGTQF
Sbjct: 113 QT------IVIDYSAPNVAKQMHVGHLRSTIIGDAAARTLEFLGHKVIRANHVGDWGTQF 166

Query: 388 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           GMLIA+L+ K  +       +ADL+AFY+E+KK +DEDE F  RA   VV LQ  D   +
Sbjct: 167 GMLIAYLE-KIQNEDANDMALADLEAFYREAKKHYDEDEEFAIRARNYVVKLQGGDEYCR 225

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           + W  + D++    Q+ Y+RLNVTLTE+   GES Y   +  +V  L+++G+    DG  
Sbjct: 226 EMWRKLVDITMSQNQQTYNRLNVTLTEKDVMGESLYNDMLPGIVADLKQRGIAVKSDGAT 285

Query: 505 IMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           +++        GE  G I   I K DGG+ Y T+D+A  + R E   A  ++Y TD  Q 
Sbjct: 286 VVYLDEFKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRHETLNASRVLYYTDSRQ- 341

Query: 557 VHFRLLEESTIIGDT----ISRLLEY 578
            H  L++   II  T     S LLE+
Sbjct: 342 -HQHLMQAWAIIRKTGYIPASMLLEH 366



 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 194/354 (54%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R LE+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +ADL+AFY
Sbjct: 135 STIIGDAAARTLEFLGHKVIRANHVGDWGTQFGMLIAYLE-KIQNEDANDMALADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +DEDE F  RA   VV LQ  D   ++ W  + D++    Q+ Y+RLNVTLTE+
Sbjct: 194 REAKKHYDEDEEFAIRARNYVVKLQGGDEYCREMWRKLVDITMSQNQQTYNRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+++G                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVADLKQRGIAVKSDGATVVYLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y TD  Q  H        +K G + P    ++   FG++
Sbjct: 314 TTTDIACAKYRHETLNASRVLYYTDSRQHQHLMQAWAIIRKTGYI-PASMLLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+LS+LLDE + R+   +++KN   ++   EL +  +AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVRLSDLLDEAIERADTLIREKN--PDMPEDELKKIVEAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR++SI + A I+  +   P
Sbjct: 431 YADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVSSIFKRADIDENNLTLP 484



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ ++   EL +  +AV  G +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  REKNPDMPEDELKKIVEAVGIGAVKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R++SI + A I+  +L     + PV L  E+E ALA  LL+  + +  V R+   H +C 
Sbjct: 466  RVSSIFKRADIDENNL-----TLPVMLNEEREQALATRLLQFEETITTVAREGTPHVMCA 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY++C  +  D+E     +   RL LA  TAK +K+  D L I+TV +M
Sbjct: 521  YLYDLAGLFSGFYEHCPILNADSE----ELRQSRLKLALLTAKTLKQGLDTLGIQTVERM 576



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 25/141 (17%)

Query: 18  VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 77
           + +  +  A  E G  T S A   +    +FGD+Q N  MA  K          P  +A+
Sbjct: 6   ILSEKISNALIEAGAPTDSEAHVRQSAKAQFGDYQANGVMAAAKKVG-----MPPRQLAE 60

Query: 78  SIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII------VNGVQP 131
            + S +         L  +  KIE A PGF+N+FL + +    ++  +      +  V+P
Sbjct: 61  KVISQL--------DLQGIASKIEIAGPGFINIFLDKAWIAANIETALKDEKLGITPVEP 112

Query: 132 PTLNKKLRVLVDFSSPNIARK 152
            T      +++D+S+PN+A++
Sbjct: 113 QT------IVIDYSAPNVAKQ 127


>gi|254229698|ref|ZP_04923107.1| arginyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|151937743|gb|EDN56592.1| arginyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 545

 Score =  239 bits (609), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 145/386 (37%), Positives = 212/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 3   QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 49

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q    + +        +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 50  FINIFLSEEFLAKQADAALADERLGVAKEEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 109

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 110 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 169

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 170 DEDEEFAVKARNYVVKLQSGDEYCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 229

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + ++V  L+++GL   DDG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 230 YNDMLPKIVADLKEQGLAVEDDGAQVVFLDEYKNKDGEPMGVIVQKRDGGFLYTTTDIAC 289

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 290 AKYRYEELSADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 337

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 338 -FGMMLGKDGKPFKTRAGGTVRLADL 362



 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/346 (38%), Positives = 185/346 (53%), Gaps = 53/346 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY
Sbjct: 103 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFY 162

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 163 RESKKLYDEDEEFAVKARNYVVKLQSGDEYCAEMWKKLVDVTMIQNQRNYDRLNVSLTRD 222

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + ++V  L+++G                         + + K+ G    
Sbjct: 223 DVMGESMYNDMLPKIVADLKEQGLAVEDDGAQVVFLDEYKNKDGEPMGVIVQKRDGGFLY 282

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 283 TTTDIACAKYRYEELSADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLEHHAFGMM 341

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E  +  + VA   +K
Sbjct: 342 LGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELDAEEKEKISKTVAMAAVK 399

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           Y+DLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG+
Sbjct: 400 YSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGV 445



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E  +  + VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 375  ESKNPELDAEEKEKISKTVAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 434

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG+  + L+       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 435  RVASIFAKAGVAMDALQ-----GDIKITDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 489

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 490  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 545



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 3   QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 49

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q    + +        +   ++ D+S+PN+A++      HL S I
Sbjct: 50  FINIFLSEEFLAKQADAALADERLGVAKEEAQTIVADYSAPNVAKE--MHVGHLRSTI 105


>gi|262276201|ref|ZP_06054010.1| arginyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262220009|gb|EEY71325.1| arginyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 576

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/398 (36%), Positives = 216/398 (54%), Gaps = 34/398 (8%)

Query: 231 ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLA 290
            S A+  +    +FGD+Q N  M + K         NP + AQ +  V+         L 
Sbjct: 23  GSPAAVRQSAKPQFGDYQANGIMGVAKKLG-----CNPREFAQKVLDVL--------ELD 69

Query: 291 KVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMH 350
            +  K E+A PGF+N+FLS  +  EQ    + +        +K  ++VD+S+PN+AKEMH
Sbjct: 70  GMASKTEIAGPGFINIFLSSEWLAEQADAALASDRLGVAEAEKQNIVVDYSAPNVAKEMH 129

Query: 351 VGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 410
           VGHLRSTIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+         S  ++D
Sbjct: 130 VGHLRSTIIGDAVVRTLEFLGHNVIRANHLGDWGTQFGMLIANLERHEAQGGDISMDLSD 189

Query: 411 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV 470
           ++ FY+ESKK +DEDE F K A   VV LQ  D   K+ W+ +  ++    Q+ YDRLNV
Sbjct: 190 IEGFYRESKKLYDEDEEFAKTARNYVVRLQSGDEYCKEKWQQLVKITLEQNQRNYDRLNV 249

Query: 471 TLTER---GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSD 522
           +LT++   GES Y   +  +V  L+ KGL   DDG  +++ +   ++   PM ++  K D
Sbjct: 250 SLTDKDVMGESMYNDMLAGIVEDLKAKGLAVEDDGAMVVFLDEYKNKDGEPMGVIIQKRD 309

Query: 523 GGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHD 582
           GGF Y T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   
Sbjct: 310 GGFLYTTTDIACAKYRYETFNADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPET 362

Query: 583 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +   +H       FGM++      F      +  +ADL
Sbjct: 363 MSLEHHA------FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/350 (38%), Positives = 190/350 (54%), Gaps = 53/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+         S  ++D++ FY
Sbjct: 135 STIIGDAVVRTLEFLGHNVIRANHLGDWGTQFGMLIANLERHEAQGGDISMDLSDIEGFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F K A   VV LQ  D   K+ W+ +  ++    Q+ YDRLNV+LT++
Sbjct: 195 RESKKLYDEDEEFAKTARNYVVRLQSGDEYCKEKWQQLVKITLEQNQRNYDRLNVSLTDK 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + K+ G    
Sbjct: 255 DVMGESMYNDMLAGIVEDLKAKGLAVEDDGAMVVFLDEYKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETFNADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PETMSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+L++LLDE   R+   +++KN   EL+  E +     VA   +K
Sbjct: 374 LGKDGKPFKTRAGGTVRLADLLDEAEARANKLIEEKN--PELSAEEKANIATTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AGI++++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFNKAGIDADN 481



 Score =  120 bits (301), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 106/180 (58%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  EEKNPELSAEEKANIATTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AGI+++++        + +  +KE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFNKAGIDADNIE-----GKIIVAEDKEKALVSKLLQFEEAVDGVAREGQPHIMCG 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  +AEG+ K     RL LA  TAK +K+  ++L I+T+ +M
Sbjct: 522  YLFELAGTFSSFYEACPIL--NAEGETK---QSRLKLAALTAKTIKQGLELLGIKTLERM 576



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 35  ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLA 94
            S A+  +    +FGD+Q N  M + K         NP + AQ +  V+         L 
Sbjct: 23  GSPAAVRQSAKPQFGDYQANGIMGVAKKLG-----CNPREFAQKVLDVL--------ELD 69

Query: 95  KVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGG 154
            +  K E A PGF+N+FLS  +  EQ    + +        +K  ++VD+S+PN+A++  
Sbjct: 70  GMASKTEIAGPGFINIFLSSEWLAEQADAALASDRLGVAEAEKQNIVVDYSAPNVAKE-- 127

Query: 155 FLYPHLPSQI 164
               HL S I
Sbjct: 128 MHVGHLRSTI 137


>gi|251789870|ref|YP_003004591.1| arginyl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247538491|gb|ACT07112.1| arginyl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 576

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 145/362 (40%), Positives = 195/362 (53%), Gaps = 54/362 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIAHL+D   +       +ADL+AFY
Sbjct: 135 STIIGDAAVRTLEFLGHRVIRANHVGDWGTQFGMLIAHLED-VQNGSASDLELADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK++DED  F +RA   VV LQ  D   +  W  + D++    Q+ YDRLNV+LT  
Sbjct: 194 REAKKQYDEDAAFAERARGYVVKLQSGDEYCRSMWRKLVDITMVQNQRSYDRLNVSLTPN 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   + ++V  L+ KG                                     
Sbjct: 254 DVMGESLYNAMLPEIVADLKAKGLAEESEGAIVVYLDEYKNKEGEAMGVIVQKKDGGYLY 313

Query: 705 ---NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +++  K    KLG   ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYEKLGADRVLYYIDSRQHQHLMQAWSIVRKAGYV-PESVSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T+KLSELLDE   R+L  +  KN   E+  TEL +  Q V+ G +K
Sbjct: 373 LGKDGKPFKTRAGGTIKLSELLDEAYERALALIAGKN--PEMDRTELEQLAQVVSIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR++SI + AG+      +P    +E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVSSIFKRAGVEESSLTQPIALTAE 490

Query: 875 VE 876
            E
Sbjct: 491 HE 492



 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 222/414 (53%), Gaps = 57/414 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+   H   +A     D  A V  + +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQALLSEK-VHQAMIAAGAPADSEAMVRQSAKA---QFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK------ 318
             +P  +A+ +   +         L  +  K E+A PGF+N+FL   +   Q++      
Sbjct: 53  -MSPRQLAEKVVQTL--------QLDGIAAKTEIAGPGFINIFLDSHWLSAQLEHALAAP 103

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
           ++ +  V+P T      ++VD+S+PN+AKEMHVG+LRSTIIGD   R LE+LGH V+R N
Sbjct: 104 NLGILPVEPQT------IVVDYSAPNVAKEMHVGNLRSTIIGDAAVRTLEFLGHRVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIAHL+D   +       +ADL+AFY+E+KK++DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAHLED-VQNGSASDLELADLEAFYREAKKQYDEDAAFAERARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   +  W  + D++    Q+ YDRLNV+LT     GES Y   + ++V  L+ KG
Sbjct: 217 LQSGDEYCRSMWRKLVDITMVQNQRSYDRLNVSLTPNDVMGESLYNAMLPEIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L E  +G  +++        GE  G I   + K DGG+ Y T+D+A  + R E+  AD +
Sbjct: 277 LAEESEGAIVVYLDEYKNKEGEAMGVI---VQKKDGGYLYTTTDIACAKYRYEKLGADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +Y  D  Q  H  L++  +I+     R   Y+   V   +H+      FGM++ 
Sbjct: 334 LYYIDSRQ--HQHLMQAWSIV-----RKAGYVPESVSLEHHM------FGMMLG 374



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 110/188 (58%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  +  KN   E+  TEL +  Q V+ G +KYADLS NR  DY+F +D ML   GNTA
Sbjct: 400  RALALIAGKN--PEMDRTELEQLAQVVSIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR++SI + AG+    L     + P++L  E E ALA  LL+  + +  V RD
Sbjct: 458  PYMQYAYTRVSSIFKRAGVEESSL-----TQPIALTAEHEQALATRLLQFEETVTTVARD 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY+NC  +  D+E   ++    RL LA  TAK +K   D L
Sbjct: 513  GTPHVMCAYLYDLAGLFSGFYENCPILNADSENTRQS----RLKLARLTAKTLKTGLDTL 568

Query: 1112 NIRTVHKM 1119
             I+TV KM
Sbjct: 569  GIQTVEKM 576



 Score = 48.1 bits (113), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+   H   +A     D  A V  + +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQALLSEK-VHQAMIAAGAPADSEAMVRQSAKA---QFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK------ 122
             +P  +A+ +   +         L  +  K E A PGF+N+FL   +   Q++      
Sbjct: 53  -MSPRQLAEKVVQTL--------QLDGIAAKTEIAGPGFINIFLDSHWLSAQLEHALAAP 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           ++ +  V+P T      ++VD+S+PN+A++
Sbjct: 104 NLGILPVEPQT------IVVDYSAPNVAKE 127


>gi|421432004|ref|ZP_15881581.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 8b-1]
 gi|437802876|ref|ZP_20838469.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 33944]
 gi|445349179|ref|ZP_21419958.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 13-1]
 gi|445362305|ref|ZP_21424146.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. PT23]
 gi|396051255|gb|EJI59773.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 8b-1]
 gi|435303611|gb|ELO79468.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 33944]
 gi|444875677|gb|ELX99874.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 13-1]
 gi|444884285|gb|ELY08126.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. PT23]
          Length = 577

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLETAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLETAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|126291425|ref|XP_001380293.1| PREDICTED: arginyl-tRNA synthetase, cytoplasmic-like [Monodelphis
            domestica]
          Length = 358

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 147/192 (76%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL+RS+DKLK+K R   LTP EL  AQ +VA+GCI+YADLSHNR  DY+FSFDKMLDDRG
Sbjct: 167  GLKRSMDKLKEKERDKVLTPEELKAAQTSVAFGCIRYADLSHNRMNDYIFSFDKMLDDRG 226

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR  ++L  +
Sbjct: 227  NTAAYLLYAFTRIRSIARLANIDEEMLQKAAKETKIILDHEKEWKLGRCILRFPEILQKI 286

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI  V+  R+LL EATA +M K 
Sbjct: 287  LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEATAAIMAKG 346

Query: 1108 FDILNIRTVHKM 1119
            FDIL I+ + KM
Sbjct: 347  FDILGIKPLQKM 358



 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 125/242 (51%), Positives = 152/242 (62%), Gaps = 44/242 (18%)

Query: 663 CDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKG------------------ 704
           CD    +FQKIYD L+++L ERGESFYQ  M  +V   E+KG                  
Sbjct: 13  CD---SEFQKIYDALDISLIERGESFYQDRMTDIVKEFEEKGFVQVDDGRKIVFVPESSV 69

Query: 705 NLSLTKKLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNP 741
            L++ K  G                       I+YV D GQ VHF+ +   A+  G  +P
Sbjct: 70  PLTIVKSDGGYTYDTSDLAAIKQRLMEEKADIIIYVVDSGQAVHFQAIFVAAQMIGWYDP 129

Query: 742 NKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTEL 801
             TR+   GFGVVLGED+KKFKTRSGDTV+L +LL+EGL+RS+DKLK+K R   LTP EL
Sbjct: 130 KVTRVSHAGFGVVLGEDKKKFKTRSGDTVRLIDLLEEGLKRSMDKLKEKERDKVLTPEEL 189

Query: 802 SEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
             AQ +VA+GCI+YADLSHNR  DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 190 KAAQTSVAFGCIRYADLSHNRMNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 249

Query: 862 SE 863
            E
Sbjct: 250 EE 251



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 113/177 (63%), Gaps = 19/177 (10%)

Query: 454 CDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS 513
           CD    +FQKIYD L+++L ERGESFYQ  M  +V   E+KG +++DDGRKI++  +  S
Sbjct: 13  CD---SEFQKIYDALDISLIERGESFYQDRMTDIVKEFEEKGFVQVDDGRKIVFVPE-SS 68

Query: 514 IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTIS 573
           +P+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV D GQ VHF+ +  +       +
Sbjct: 69  VPLTIVKSDGGYTYDTSDLAAIKQRLMEEKADIIIYVVDSGQAVHFQAIFVA-------A 121

Query: 574 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           +++ +    V R++H G     FG+++   + KF    T+S     L    +E  KR
Sbjct: 122 QMIGWYDPKVTRVSHAG-----FGVVLGEDKKKFK---TRSGDTVRLIDLLEEGLKR 170


>gi|423140420|ref|ZP_17128058.1| arginyl-tRNA synthetase [Salmonella enterica subsp. houtenae str.
           ATCC BAA-1581]
 gi|379052974|gb|EHY70865.1| arginyl-tRNA synthetase [Salmonella enterica subsp. houtenae str.
           ATCC BAA-1581]
          Length = 577

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSSIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + +     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA----VRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSSIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|70952033|ref|XP_745212.1| arginyl-tRNA synthetase [Plasmodium chabaudi chabaudi]
 gi|56525464|emb|CAH75311.1| arginyl-tRNA synthetase, putative [Plasmodium chabaudi chabaudi]
          Length = 523

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/404 (36%), Positives = 229/404 (56%), Gaps = 38/404 (9%)

Query: 214 VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 273
           +F  ++Q  FP + ++ A V   N     KFG FQCN+A+    IFK  G++ N F+ A 
Sbjct: 14  IFQTSIQKCFPSISEE-AVVTYAN----MKFGHFQCNNAI---NIFKKYGKELN-FENAH 64

Query: 274 SIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG-----VQPP 328
            I+  +   +  N +L    + I  +  GF+ V +SR Y  + +  +  N      V   
Sbjct: 65  KISLSIIENI--NETL---FEDINASPQGFITVKISRSYIEKSLLKLYENNKINISVDMN 119

Query: 329 TLN-----KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
            +N     K   VL+DFSSPNIAKEMHVGHLRSTI+GDTIS++ E+L     R+NHVGDW
Sbjct: 120 EINDGNDAKFENVLIDFSSPNIAKEMHVGHLRSTILGDTISKVFEFLKVKTHRVNHVGDW 179

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGM+I ++   +P+Y  + P + +L   Y+E+KK +D D+ F+ ++ +  + LQ  D
Sbjct: 180 GTQFGMIINYVVTNYPNYKEEMPELTNLTLLYQEAKKCYDNDKNFEIKSKEYAIKLQEHD 239

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
            D +  W  IC+ S+++F KIY  L++ L   GESFY   +   +  L+ K +L  + G 
Sbjct: 240 EDCRYIWTKICEASKKEFNKIYKILDIKLDYFGESFYVPKIPSTLQILKDKNILT-NIGD 298

Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
            + +  ++  +P+ + KS+GG+ YD++D+A++  R++    D I+YVTD GQ  HF  L 
Sbjct: 299 ALCYQSEKYPVPLFLQKSNGGYGYDSTDIASLYYRLKVLNVDSIIYVTDNGQLSHFETLF 358

Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           E       + R L ++  D V+L HVG     FG+++     KF
Sbjct: 359 E-------LCRKLGWVNDD-VKLIHVG-----FGLVLNADNKKF 389



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 186/347 (53%), Gaps = 48/347 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STI+GDTIS++ E+L     R+NHVGDWGTQFGM+I ++   +P+Y  + P + +L   Y
Sbjct: 152 STILGDTISKVFEFLKVKTHRVNHVGDWGTQFGMIINYVVTNYPNYKEEMPELTNLTLLY 211

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +D D+ F+ ++ +  + LQ  D D +  W  IC+ S+++F KIY  L++ L   
Sbjct: 212 QEAKKCYDNDKNFEIKSKEYAIKLQEHDEDCRYIWTKICEASKKEFNKIYKILDIKLDYF 271

Query: 685 GESFYQKHMEQLVPYLEKKGNLS------------------LTKKLG------------- 713
           GESFY   +   +  L+ K  L+                  L K  G             
Sbjct: 272 GESFYVPKIPSTLQILKDKNILTNIGDALCYQSEKYPVPLFLQKSNGGYGYDSTDIASLY 331

Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
                     I+YVTD GQ  HF  L E  +K G +N +  ++  VGFG+VL  D KKFK
Sbjct: 332 YRLKVLNVDSIIYVTDNGQLSHFETLFELCRKLGWVNDD-VKLIHVGFGLVLNADNKKFK 390

Query: 764 TRSGDTVKLSELLDEGLRRSLD------KLKDKNRHTELTPTELSEAQQAVAYGCIKYAD 817
           TRSG  +KL  L++EG  R+ +      KLK     +     +L +  Q +    IKY D
Sbjct: 391 TRSGTNIKLINLINEGTERAKNDLMERIKLKSDAEKSYFEGIDLDQLSQDICVSAIKYFD 450

Query: 818 LSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           +  +RN DY FS++ ML  +GNT +Y++Y Y+RI SI R + IN E+
Sbjct: 451 IKQHRNTDYKFSYENMLSIKGNTGLYIIYGYSRICSIFRKSEINIEE 497



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            KLK     +     +L +  Q +    IKY D+  +RN DY FS++ ML  +GNT +Y++
Sbjct: 419  KLKSDAEKSYFEGIDLDQLSQDICVSAIKYFDIKQHRNTDYKFSYENMLSIKGNTGLYII 478

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
            Y Y+RI SI R + IN E+L        + L ++ E  L   +L+  DV
Sbjct: 479  YGYSRICSIFRKSEINIEELV----PDELKLTNQYEINLGLHILKFPDV 523



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 26/165 (15%)

Query: 18  VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 77
           +F  ++Q  FP + ++ A V   N     KFG FQCN+A+    IFK  G++ N F+ A 
Sbjct: 14  IFQTSIQKCFPSISEE-AVVTYAN----MKFGHFQCNNAI---NIFKKYGKELN-FENAH 64

Query: 78  SIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG-----VQPP 132
            I+  +   +  N +L    + I A+  GF+ V +SR Y  + +  +  N      V   
Sbjct: 65  KISLSIIENI--NETL---FEDINASPQGFITVKISRSYIEKSLLKLYENNKINISVDMN 119

Query: 133 TLN-----KKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKA 172
            +N     K   VL+DFSSPNIA++      HL S I    ISK 
Sbjct: 120 EINDGNDAKFENVLIDFSSPNIAKEMHV--GHLRSTILGDTISKV 162


>gi|320157028|ref|YP_004189407.1| arginyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319932340|gb|ADV87204.1| arginyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
          Length = 577

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 169/494 (34%), Positives = 252/494 (51%), Gaps = 55/494 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +        +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALADPRLGVASEEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+L+     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLSRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   DDG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKAQGLAVEDDGAQVVFLDEFKNKDGEPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL-------QAFYKESKK-RFDEDEIFKKRAYQCVV 646
            FGM++      F      +  +ADL        A   ESK     EDE   K+A    V
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKNPELAEDE---KKAIANTV 425

Query: 647 ALQRFDPDYKKAWEMICDVSR-RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGN 705
           A+         A     D+S+ R    ++D  N+   E   + Y ++    V  +  K  
Sbjct: 426 AM---------AAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAG 476

Query: 706 LSLTKKLGIVYVTD 719
           +S+    G + +TD
Sbjct: 477 VSMDDLQGEIKITD 490



 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 189/357 (52%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+L+     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLSRDDVMGESMYNDMLPKIVADLKAQGLAVEDDGAQVVFLDEFKNKDGEPMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E       
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELAEDEKKAIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++ +D
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVSMDD 481



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E       VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAEDEKKAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++ +DL+       + +  EKE AL   L++  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVSMDDLQ-----GEIKITDEKEKALIAKLMQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIDTLERM 577



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +        +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALADPRLGVASEEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|386388558|ref|ZP_10073419.1| arginine--tRNA ligase [Haemophilus paraphrohaemolyticus HK411]
 gi|385697644|gb|EIG28056.1| arginine--tRNA ligase [Haemophilus paraphrohaemolyticus HK411]
          Length = 575

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 135/329 (41%), Positives = 197/329 (59%), Gaps = 28/329 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K         NP + AQ I          N +L  + +K+E+A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NVNLDGIAEKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII--VN-GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL + +        +  VN G+Q  T      +++D+SSPN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDKDWLAANANSALQAVNFGIQTATPQT---IVIDYSSPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +    +  ++DL+AFY+ +K
Sbjct: 139 GDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENENATAMELSDLEAFYRAAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
           + +D DE F ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTLTE+   G
Sbjct: 198 EHYDSDEAFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLTEKDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   + ++V  L++KGL   DDG  +++ E   ++   PM ++  K DGGF Y T+D
Sbjct: 258 ESLYNPMLPEIVADLKEKGLAVEDDGALVVFLEEFKNKDGDPMGVIVQKKDGGFLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +AA + R E   AD ++  +D  Q  H +
Sbjct: 318 IAAAKYRYETLNADRVLVFSDSRQAQHMQ 346



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 197/355 (55%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +    +  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENENATAMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D DE F ++A   VV LQ  D   +  W+ + D++    Q+ YDRL
Sbjct: 187 SDLEAFYRAAKEHYDSDEAFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLTE+   GES Y   + ++V  L++KG                         + + K
Sbjct: 247 NVTLTEKDVMGESLYNPMLPEIVADLKEKGLAVEDDGALVVFLEEFKNKDGDPMGVIVQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++  +D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLNADRVLVFSDSRQAQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKL +LLDE + R+ DKL  + R  EL+  E +   +A
Sbjct: 366 HPFFGMMLGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLISE-RSQELSAEEKAAVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           VA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   +GI++
Sbjct: 424 VAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRICSIFARSGIDA 478



 Score =  130 bits (326), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 102/178 (57%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R  EL+  E +   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RSQELSAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   +GI++  L     +  + L  +KE  LA  LL+  + L  V +D   H LC+YL
Sbjct: 468  CSIFARSGIDAGKL-----TGEIVLTEDKERELAVKLLQFEEALNGVAKDGMPHILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY+ C  +  +     + V   RL L   TA+ +K+  D+L I+TV KM
Sbjct: 523  YELAGVFSSFYEACPILNAE-----EAVKNSRLRLVALTARTLKQGLDLLGIKTVEKM 575



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 21/121 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K         NP + AQ I          N +L  + +K+E A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILD--------NVNLDGIAEKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII--VN-GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           F+N+FL + +        +  VN G+Q  T      +++D+SSPN+A++      HL S 
Sbjct: 82  FINIFLDKDWLAANANSALQAVNFGIQTATPQT---IVIDYSSPNVAKE--MHVGHLRST 136

Query: 164 I 164
           I
Sbjct: 137 I 137


>gi|418513307|ref|ZP_13079538.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Pomona str. ATCC 10729]
 gi|366082204|gb|EHN46141.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Pomona str. ATCC 10729]
          Length = 577

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|16760859|ref|NP_456476.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141449|ref|NP_804791.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|378959125|ref|YP_005216611.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. P-stx-12]
 gi|21542251|sp|Q8Z5V7.1|SYR_SALTI RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|25293290|pir||AI0744 arginine-tRNA ligase (EC 6.1.1.19) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503156|emb|CAD05660.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137076|gb|AAO68640.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|374352997|gb|AEZ44758.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. P-stx-12]
          Length = 577

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDETFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRTGGTVKLADL 393



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDETFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|307130871|ref|YP_003882887.1| arginyl-tRNA synthetase [Dickeya dadantii 3937]
 gi|306528400|gb|ADM98330.1| arginyl-tRNA synthetase [Dickeya dadantii 3937]
          Length = 576

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 144/362 (39%), Positives = 196/362 (54%), Gaps = 54/362 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIAHL+D   +  T    +ADL+AFY
Sbjct: 135 STIIGDASVRTLEFLGHNVIRANHVGDWGTQFGMLIAHLED-VQNGNTSDLELADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +D+D +F +RA   VV LQ  D   +  W  + D++    Q+ YDRLNV+LT  
Sbjct: 194 REAKKHYDDDAVFAERARGYVVKLQSGDEYCRSMWRKLVDITMVQNQRSYDRLNVSLTPN 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   + ++V  L+ KG                                     
Sbjct: 254 DVMGESLYNAMLPEIVADLKAKGLAVESEGAIVVYLDEYKNKEGEAMGVIIQKKDGGYLY 313

Query: 705 ---NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +++  K    KLG   ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYEKLGASRVLYYIDSRQHQHLMQAWSIVRKAGYV-PESVSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T+KLSELLDE   R+L  +  KN   E+   EL +  Q V+ G +K
Sbjct: 373 LGKDGKPFKTRAGGTIKLSELLDEAYERALTLIAGKN--PEMERGELEQLAQVVSVGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR++SI + AG+      +P    +E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVSSIFKRAGVEEASLTQPITLTAE 490

Query: 875 VE 876
            E
Sbjct: 491 HE 492



 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 222/414 (53%), Gaps = 57/414 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+   H   +A     D  A V  + +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQALLSEK-VHQAMIAAGAPADSEAMVRQSAKA---QFGDYQANGIMAAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +   +         L  +  K E+A PGF+N+FL+  +   Q++  +   
Sbjct: 53  -MAPRQLAEKVLQTL--------QLDGIAAKTEIAGPGFINIFLAPQWLSGQLEHALTAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V+ V+P T      ++VD+S+PN+AKEMHVG+LRSTIIGD   R LE+LGH+V+R N
Sbjct: 104 KLGVSAVEPQT------IVVDYSAPNVAKEMHVGNLRSTIIGDASVRTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIAHL+D   +  T    +ADL+AFY+E+KK +D+D +F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAHLED-VQNGNTSDLELADLEAFYREAKKHYDDDAVFAERARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   +  W  + D++    Q+ YDRLNV+LT     GES Y   + ++V  L+ KG
Sbjct: 217 LQSGDEYCRSMWRKLVDITMVQNQRSYDRLNVSLTPNDVMGESLYNAMLPEIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E+  A  +
Sbjct: 277 LAVESEGAIVVYLDEYKNKEGEAMGVI---IQKKDGGYLYTTTDIACAKYRYEKLGASRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +Y  D  Q  H  L++  +I+     R   Y+   V   +H+      FGM++ 
Sbjct: 334 LYYIDSRQ--HQHLMQAWSIV-----RKAGYVPESVSLEHHM------FGMMLG 374



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 109/188 (57%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  +  KN   E+   EL +  Q V+ G +KYADLS NR  DY+F +D ML   GNTA
Sbjct: 400  RALTLIAGKN--PEMERGELEQLAQVVSVGAVKYADLSKNRTTDYIFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR++SI + AG+    L     + P++L  E E ALA  LL+  + +  V RD
Sbjct: 458  PYMQYAYTRVSSIFKRAGVEEASL-----TQPITLTAEHEQALATRLLQFEETVTTVARD 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY+NC  +  D +G  ++    RL LA  TAK +K   + L
Sbjct: 513  GTPHVMCAYLYDLAGLFSGFYENCPILNADNDGTRQS----RLKLALLTAKTLKTGLNTL 568

Query: 1112 NIRTVHKM 1119
             I+TV KM
Sbjct: 569  GIQTVEKM 576



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+   H   +A     D  A V  + +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQALLSEK-VHQAMIAAGAPADSEAMVRQSAKA---QFGDYQANGIMAAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +   +         L  +  K E A PGF+N+FL+  +   Q++  +   
Sbjct: 53  -MAPRQLAEKVLQTL--------QLDGIAAKTEIAGPGFINIFLAPQWLSGQLEHALTAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              V+ V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVSAVEPQT------IVVDYSAPNVAKE 127


>gi|284007623|emb|CBA73252.1| arginyl-tRNA synthetase [Arsenophonus nasoniae]
          Length = 576

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 145/391 (37%), Positives = 215/391 (54%), Gaps = 50/391 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF----K 260
           M+++  LS+  ++A+  A    G    S A        +FGD+Q N  M+  K      +
Sbjct: 1   MNIQALLSEKISNALVAA----GAPKGSDAHIRPSTKAQFGDYQANGVMSAAKKIGIPPR 56

Query: 261 DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK-- 318
              EK  P    ++IAS                 K+E+A PGF+N+FL + +  +QI+  
Sbjct: 57  QLAEKMLPLLKLENIAS-----------------KVEIAGPGFINIFLDKQWIAKQIELT 99

Query: 319 ----DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDV 374
                + +N V P T      +++D+S+PN+AK+MHVGHLRSTIIGD ++R LE+LGH V
Sbjct: 100 LQHEKLAINSVTPQT------IIIDYSAPNVAKQMHVGHLRSTIIGDAVARTLEFLGHKV 153

Query: 375 VRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQ 434
           +R NH+GDWGTQFGMLIA+L+ K       +  +ADL+ FY+E+KK +DEDE F + A  
Sbjct: 154 IRANHIGDWGTQFGMLIAYLE-KVQQENATNMALADLETFYREAKKHYDEDENFAELARN 212

Query: 435 CVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYL 491
            VV LQ  D   +K W  + D++    Q+ Y RLNVTLTE    GES Y   +  +V  L
Sbjct: 213 YVVKLQSGDEYCRKMWHKLVDITMAQNQQTYQRLNVTLTEDDVMGESLYNNMLPDIVADL 272

Query: 492 EKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADW 546
             KGL    DG  +++      +D  ++ + I K DGG+ Y T+D+A  + R E   AD 
Sbjct: 273 TAKGLAVESDGAMVVYLDEFKNKDGDAMGVIIQKKDGGYLYTTTDIACAKYRHEILHADR 332

Query: 547 IVYVTDLGQGVH----FRLLEESTIIGDTIS 573
           ++Y TD  Q  H    + ++ ++  I DT+S
Sbjct: 333 VLYYTDSRQHQHLMQAWAIVRKAGYIPDTMS 363



 Score =  232 bits (592), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 141/362 (38%), Positives = 192/362 (53%), Gaps = 54/362 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R LE+LGH V+R NH+GDWGTQFGMLIA+L+ K       +  +ADL+ FY
Sbjct: 135 STIIGDAVARTLEFLGHKVIRANHIGDWGTQFGMLIAYLE-KVQQENATNMALADLETFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F + A   VV LQ  D   +K W  + D++    Q+ Y RLNVTLTE 
Sbjct: 194 REAKKHYDEDENFAELARNYVVKLQSGDEYCRKMWHKLVDITMAQNQQTYQRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L  KG                         + + KK G    
Sbjct: 254 DVMGESLYNNMLPDIVADLTAKGLAVESDGAMVVYLDEFKNKDGDAMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y TD  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRHEILHADRVLYYTDSRQHQHLMQAWAIVRKAGYI-PDTMSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T++L++LLDE + R+   ++ KN  + +   EL    QAV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTIRLADLLDEAIERAAHLIRQKN--SAMPEKELQSIIQAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ASI + A IN      P    +E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAKINPATLTAPVILANE 490

Query: 875 VE 876
            E
Sbjct: 491 YE 492



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 106/191 (55%), Gaps = 11/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+   ++ KN  + +   EL    QAV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  AIERAAHLIRQKN--SAMPEKELQSIIQAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ASI + A IN   L     + PV L +E E  LA  LL+  + ++ V
Sbjct: 455  NTAPYMQYAYTRVASIFKRAKINPATL-----TAPVILANEYEQVLAIRLLQFEETILTV 509

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + +   ++    RL LA  T K +K   
Sbjct: 510  AREGLPHIMCSYLYDLAGLFSSFYEHCPILNAENDASKQS----RLKLALLTQKTLKIGL 565

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 566  DTLGIETVERM 576



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 37/154 (24%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF----K 64
           M+++  LS+  ++A+  A    G    S A        +FGD+Q N  M+  K      +
Sbjct: 1   MNIQALLSEKISNALVAA----GAPKGSDAHIRPSTKAQFGDYQANGVMSAAKKIGIPPR 56

Query: 65  DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM--- 121
              EK  P    ++IAS                 K+E A PGF+N+FL + +  +Q+   
Sbjct: 57  QLAEKMLPLLKLENIAS-----------------KVEIAGPGFINIFLDKQWIAKQIELT 99

Query: 122 ---KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
              + + +N V P T      +++D+S+PN+A++
Sbjct: 100 LQHEKLAINSVTPQT------IIIDYSAPNVAKQ 127


>gi|416751162|ref|ZP_11860016.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323255049|gb|EGA38837.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
          Length = 577

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/389 (37%), Positives = 216/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++    ++       +  +ADL
Sbjct: 367 --HMFGMMLGKDGNRLKTRAGGTVKLADL 393



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 185/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D  + KTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGNRLKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|339492661|ref|YP_004712954.1| arginyl-tRNA synthetase [Pseudomonas stutzeri ATCC 17588 = LMG
           11199]
 gi|338800033|gb|AEJ03865.1| arginyl-tRNA synthetase [Pseudomonas stutzeri ATCC 17588 = LMG
           11199]
          Length = 579

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 224/405 (55%), Gaps = 46/405 (11%)

Query: 211 LSDVFTHAVQVAF---------PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           + D   H +Q A          PE       V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQALVRLTSEGVLPEGLTPAIQVENTKDK---SHGDFASNIAMMLAKPAGM 57

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
           K     P ++A+ +       +A  P  A+ I K+E+A PGF+N F +     ++++  +
Sbjct: 58  K-----PRELAEKL-------IAALPQDAQ-ISKVEIAGPGFLNFFQNSDALAQRLETAL 104

Query: 322 VNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
            +  +     + K RV++D SSPN+AKEMHVGHLRSTIIGD + R+LE+LG +V+R NHV
Sbjct: 105 ADAQLAVHKASAKQRVVIDLSSPNLAKEMHVGHLRSTIIGDAVGRVLEFLGDEVIRQNHV 164

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGML+A+L++K          +ADL+ FY+ +K+RFDE   F  RA + VV LQ
Sbjct: 165 GDWGTQFGMLLAYLEEKPA---AAESELADLEQFYRAAKQRFDESPEFADRARELVVKLQ 221

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLL 497
             D      W    D+S    QKIYDRLNV LT    +GES Y   +  +V  L +KGLL
Sbjct: 222 AGDAQCLSLWTRFNDISLSHCQKIYDRLNVKLTPADVKGESAYNADLADIVEALREKGLL 281

Query: 498 ELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
             D+G + ++       +   +P+ + K+ GG+ Y T+DLAA+R R ++  AD ++Y  D
Sbjct: 282 TEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLYATTDLAAMRYRSQQLHADRVLYFVD 341

Query: 553 LGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
             Q +HF++  E       ++R   ++ H+ ++L H+G +GT  G
Sbjct: 342 QRQALHFQMAFE-------VARRAGFV-HEGMQLEHMG-FGTMNG 377



 Score =  229 bits (583), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 188/345 (54%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R+LE+LG +V+R NHVGDWGTQFGML+A+L++K          +ADL+ FY
Sbjct: 140 STIIGDAVGRVLEFLGDEVIRQNHVGDWGTQFGMLLAYLEEKPA---AAESELADLEQFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA + VV LQ  D      W    D+S    QKIYDRLNV LT  
Sbjct: 197 RAAKQRFDESPEFADRARELVVKLQAGDAQCLSLWTRFNDISLSHCQKIYDRLNVKLTPA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   +  +V  L +KG L+                       + +K G     
Sbjct: 257 DVKGESAYNADLADIVEALREKGLLTEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF++  E A++AG ++    +++ +GFG +
Sbjct: 317 ATTDLAAMRYRSQQLHADRVLYFVDQRQALHFQMAFEVARRAGFVHEG-MQLEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+   +K KN   EL   EL +  +AV    +K
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLDEAEQRAYALVKGKN--PELDEAELRQIARAVGISAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML   GNTA YLLYAYTR+AS+ R  G
Sbjct: 434 YADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYTRVASVFRKLG 478



 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   EL +  +AV    +KYADLS +R  DY F+F+ ML   GNTA YLLYAYT
Sbjct: 409  KGKNPELDEAELRQIARAVGISAVKYADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+ R  G   +++     S  + L+ E+E ALA  L +  +VL  V      H LC 
Sbjct: 469  RVASVFRKLGKGIDEI-----SGHIQLDAEQELALAAKLAQFGEVLNSVGEKGEPHLLCA 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY++C  +  + + + ++    RL LA  T + +K+
Sbjct: 524  YLYDLAGLFSSFYEHCPILSAEQDAQKQS----RLRLAALTGRTLKQ 566



 Score = 43.5 bits (101), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 26/148 (17%)

Query: 15  LSDVFTHAVQVAF---------PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           + D   H +Q A          PE       V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQALVRLTSEGVLPEGLTPAIQVENTKDK---SHGDFASNIAMMLAKPAGM 57

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           K     P ++A+ +       +A  P  A+ I K+E A PGF+N F +     ++++  +
Sbjct: 58  K-----PRELAEKL-------IAALPQDAQ-ISKVEIAGPGFLNFFQNSDALAQRLETAL 104

Query: 126 VNG-VQPPTLNKKLRVLVDFSSPNIARK 152
            +  +     + K RV++D SSPN+A++
Sbjct: 105 ADAQLAVHKASAKQRVVIDLSSPNLAKE 132


>gi|167552453|ref|ZP_02346206.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168259814|ref|ZP_02681787.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|198246204|ref|YP_002215175.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|375118656|ref|ZP_09763823.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. SD3246]
 gi|445148162|ref|ZP_21388672.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. SL1438]
 gi|445150080|ref|ZP_21389541.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. HWS51]
 gi|238690367|sp|B5FSM1.1|SYR_SALDC RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|197940720|gb|ACH78053.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205322924|gb|EDZ10763.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205351086|gb|EDZ37717.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|326622923|gb|EGE29268.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. SD3246]
 gi|444843758|gb|ELX69011.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. SL1438]
 gi|444857291|gb|ELX82304.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. HWS51]
          Length = 577

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|238754848|ref|ZP_04616198.1| Arginyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238706859|gb|EEP99226.1| Arginyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 577

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 235/443 (53%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADSEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK------ 318
              P  +A+ + +++         L  +  K+E+A PGF+N+FL R +  E+++      
Sbjct: 53  -MQPRQLAEKVVALL--------DLEGISSKVEIAGPGFINIFLDRQWIAEKVEYALTAP 103

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + +  V+P T      V++D+S+PN+AK+MHVGHLRSTIIGD  +R LE+LGH+V+R N
Sbjct: 104 KLGIAPVEPQT------VVIDYSAPNVAKQMHVGHLRSTIIGDAAARTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+E+KK +DEDE F  RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASDMGLSDLEVFYREAKKHYDEDEAFAARARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   +  W  + D++    Q  YDRLNVTLT+    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRAMWRKLVDITMAQNQISYDRLNVTLTQDDVMGESLYNSMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTVRLSDLLDEAIER 400



 Score =  227 bits (578), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 140/356 (39%), Positives = 189/356 (53%), Gaps = 58/356 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+E+KK +DEDE F  RA   VV LQ  D   +  W  + D++    Q  YDRL
Sbjct: 187 SDLEVFYREAKKHYDEDEAFAARARAYVVKLQGGDEYCRAMWRKLVDITMAQNQISYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTQDDVMGESLYNSMLPGIVADLKAKGLAVESEGATVVFLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TV+LS+LLDE + R+   + +KN   ++   EL+E   A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVRLSDLLDEAIERAGKLIAEKN--PDMPANELAEVVNA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           V  G +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ S+ + AG+  E
Sbjct: 424 VGIGAVKYADLSKSRTTDYVFDWDNMLALDGNTAPYMQYAYTRVVSVFKRAGVVDE 479



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 106/178 (59%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL+E   AV  G +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPANELAEVVNAVGIGAVKYADLSKSRTTDYVFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ + AG+  E     + + P+ +  E+E ALA  LL+  + +  V R+   H +C YL
Sbjct: 468  VSVFKRAGVVDER----SLTLPLVITEEREAALATRLLQFEETITNVAREGTPHVMCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D+E   ++    RL LA  TAK +K+  D L I+TV +M
Sbjct: 524  YDVAGLFSSFYEHCQILNADSEESRQS----RLKLAMLTAKTLKQGLDTLGIQTVERM 577



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADSEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK------ 122
              P  +A+ + +++         L  +  K+E A PGF+N+FL R +  E+++      
Sbjct: 53  -MQPRQLAEKVVALL--------DLEGISSKVEIAGPGFINIFLDRQWIAEKVEYALTAP 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + +  V+P T      V++D+S+PN+A++
Sbjct: 104 KLGIAPVEPQT------VVIDYSAPNVAKQ 127


>gi|433657115|ref|YP_007274494.1| Arginyl-tRNA synthetase [Vibrio parahaemolyticus BB22OP]
 gi|432507803|gb|AGB09320.1| Arginyl-tRNA synthetase [Vibrio parahaemolyticus BB22OP]
          Length = 577

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 209/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  +Q    + +        +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLCEEFLAKQADAALADSRLGVAAEEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +ADL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELADLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   DDG ++++ E     D  ++ + + K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/353 (38%), Positives = 188/353 (53%), Gaps = 57/353 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 ADLEGFYRESKKLYDEDEEFAVKARNYVVKLQSGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+LT     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLTRDDVMGESMYNDMLPKIVADLKAQGLAVEDDGAQVVFLEEFKNKDGEAMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E  +  + 
Sbjct: 367 HHAFGMMLGKDGKPFKTRAGGTVRLADLLDEAEVRAAQLIESKN--PELDAEEKEKISKT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG+
Sbjct: 425 VAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGV 477



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E  +  + VA   +KY+DLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELDAEEKEKISKTVAMAAVKYSDLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG+  ++L+       + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVAMDELQ-----GDIQITDEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKLAALTAKTIKQGLSLLGIETLERM 577



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL   +  +Q    + +        +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLCEEFLAKQADAALADSRLGVAAEEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|418844987|ref|ZP_13399773.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19443]
 gi|418859040|ref|ZP_13413649.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19470]
 gi|418863490|ref|ZP_13418028.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19536]
 gi|392813796|gb|EJA69760.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19443]
 gi|392831279|gb|EJA86913.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19470]
 gi|392833358|gb|EJA88973.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19536]
          Length = 577

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|168462557|ref|ZP_02696488.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|375000954|ref|ZP_09725294.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Infantis str. SARB27]
 gi|418760784|ref|ZP_13316937.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 35185]
 gi|418764819|ref|ZP_13320912.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 35199]
 gi|418772428|ref|ZP_13328432.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 21539]
 gi|418775616|ref|ZP_13331574.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 33953]
 gi|418778119|ref|ZP_13334032.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 35188]
 gi|418783222|ref|ZP_13339070.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 21559]
 gi|418800785|ref|ZP_13356433.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 35202]
 gi|419789379|ref|ZP_14315059.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. Levine 1]
 gi|419794375|ref|ZP_14319989.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. Levine 15]
 gi|195634216|gb|EDX52568.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|353075642|gb|EHB41402.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Infantis str. SARB27]
 gi|392615118|gb|EIW97558.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. Levine 15]
 gi|392615164|gb|EIW97603.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. Levine 1]
 gi|392732542|gb|EIZ89753.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 21539]
 gi|392741768|gb|EIZ98863.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 35199]
 gi|392742336|gb|EIZ99426.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 35185]
 gi|392748689|gb|EJA05675.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 33953]
 gi|392755933|gb|EJA12832.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 35188]
 gi|392757642|gb|EJA14528.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 21559]
 gi|392783352|gb|EJA39977.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 35202]
          Length = 577

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|161613533|ref|YP_001587498.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|197263437|ref|ZP_03163511.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|189083546|sp|A9MUA9.1|SYR_SALPB RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|161362897|gb|ABX66665.1| hypothetical protein SPAB_01253 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197241692|gb|EDY24312.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 577

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|62180486|ref|YP_216903.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168241540|ref|ZP_02666472.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449121|ref|YP_002045963.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|375114816|ref|ZP_09759986.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SCSA50]
 gi|386591746|ref|YP_006088146.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. B182]
 gi|419730429|ref|ZP_14257375.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. 41579]
 gi|419732114|ref|ZP_14259020.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. 41563]
 gi|419738286|ref|ZP_14265051.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. 41573]
 gi|419742322|ref|ZP_14268996.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. 41566]
 gi|419747458|ref|ZP_14273978.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. 41565]
 gi|421570966|ref|ZP_16016649.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00322]
 gi|421574696|ref|ZP_16020317.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00325]
 gi|421579697|ref|ZP_16025259.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00326]
 gi|421586004|ref|ZP_16031491.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00328]
 gi|75482759|sp|Q57N89.1|SYR_SALCH RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|238693639|sp|B4T808.1|SYR_SALHS RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|62128119|gb|AAX65822.1| arginine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|194407425|gb|ACF67644.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205339146|gb|EDZ25910.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|322714962|gb|EFZ06533.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SCSA50]
 gi|381294437|gb|EIC35576.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. 41579]
 gi|381302654|gb|EIC43686.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. 41573]
 gi|381302963|gb|EIC43992.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. 41563]
 gi|381314193|gb|EIC54967.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. 41566]
 gi|381318612|gb|EIC59332.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. 41565]
 gi|383798790|gb|AFH45872.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. B182]
 gi|402521172|gb|EJW28510.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00326]
 gi|402522601|gb|EJW29923.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00322]
 gi|402524896|gb|EJW32193.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00325]
 gi|402529130|gb|EJW36374.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. CFSAN00328]
          Length = 577

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|219871399|ref|YP_002475774.1| arginyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|219691603|gb|ACL32826.1| arginyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 548

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/326 (39%), Positives = 193/326 (59%), Gaps = 22/326 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +          N  L  + +K+E+A PG
Sbjct: 8   QFGDYQANGIMGAAKKLG-----LNPREFAQKVVD--------NVDLNGIAEKLEIAGPG 54

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL+  +  +Q ++          LN+   V+VD+SSPN+AKEMHVGHLRSTIIGD 
Sbjct: 55  FINIFLAPTWLAQQTENAFSGDKLGINLNQAQTVVVDYSSPNVAKEMHVGHLRSTIIGDG 114

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K+ +
Sbjct: 115 VVRALEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFYRTAKEHY 173

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           D DE+F ++A   VV LQ  D   +  W+ + +++ +  Q  Y+RLNVTLTE    GES 
Sbjct: 174 DSDEVFAEKARNYVVKLQSGDDYCRTMWKKLVNITMQQNQHNYNRLNVTLTENDVMGESL 233

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL   DDG  +++ +   ++   PM ++  K DGGF Y T+D+AA
Sbjct: 234 YNPMLPEIVADLKAQGLAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAA 293

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFR 560
            + R E  KAD  +  +D  Q  H +
Sbjct: 294 AKYRFETLKADRALVFSDTRQSQHMQ 319



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 189/347 (54%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 108 STIIGDGVVRALEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFY 166

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+ +D DE+F ++A   VV LQ  D   +  W+ + +++ +  Q  Y+RLNVTLTE 
Sbjct: 167 RTAKEHYDSDEVFAEKARNYVVKLQSGDDYCRTMWKKLVNITMQQNQHNYNRLNVTLTEN 226

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   + ++V  L+ +                         G +   K  G +Y
Sbjct: 227 DVMGESLYNPMLPEIVADLKAQGLAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLY 286

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+   ++   FG++
Sbjct: 287 TTTDIAAAKYRFETLKADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLEHHNFGMM 345

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   + +KN   +LT  E     +AVA G +K
Sbjct: 346 LGKDGKPFKTRTGGTVKLADLLDEAVERAEKLIAEKN--PDLTACEKQAVVEAVAIGAVK 403

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           Y+DLS NR  DYVF +D ML   GNTA Y+ YAYTR+ SI   AGI+
Sbjct: 404 YSDLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRVRSIFSRAGID 450



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 105/178 (58%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ +LT  E     +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTR+
Sbjct: 381  KNPDLTACEKQAVVEAVAIGAVKYSDLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRV 440

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   AGI+   L     +  + L  EKE  LA  LL+  + + +V +D   H LC+YL
Sbjct: 441  RSIFSRAGIDPNSL-----TANIVLIDEKERNLAIKLLQFEEAVTVVAKDGTPHVLCQYL 495

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY+ C  +  +AE  IK     RL LA  TAK +K+  D+L I+TV KM
Sbjct: 496  YELAGIFSSFYEACPIL--NAEESIK---QSRLKLAHLTAKTLKQGLDLLGIKTVEKM 548



 Score = 60.1 bits (144), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +          N  L  + +K+E A PG
Sbjct: 8   QFGDYQANGIMGAAKKLG-----LNPREFAQKVVD--------NVDLNGIAEKLEIAGPG 54

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL+  +  +Q ++          LN+   V+VD+SSPN+A++      HL S I
Sbjct: 55  FINIFLAPTWLAQQTENAFSGDKLGINLNQAQTVVVDYSSPNVAKE--MHVGHLRSTI 110


>gi|149191128|ref|ZP_01869387.1| arginyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148835056|gb|EDL52034.1| arginyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 577

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/326 (40%), Positives = 193/326 (59%), Gaps = 21/326 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q  + + +        ++  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQADEALTDARLGVASQEQQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DED  F +RA   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDAEFAERARGYVVKLQGGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L++KGL   DDG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPGIVQDLKEKGLAVEDDGAQVVFLDEYKNKDGEPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFR 560
            + R E+  AD ++Y  D  Q  H +
Sbjct: 322 AKYRYEKLGADRVLYFIDSRQHQHLQ 347



 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 137/350 (39%), Positives = 193/350 (55%), Gaps = 53/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DED  F +RA   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDAEFAERARGYVVKLQGGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   +  +V  L++KG                                     
Sbjct: 255 DVMGESMYNDMLPGIVQDLKEKGLAVEDDGAQVVFLDEYKNKDGEPMGVIIQKRDGGFLY 314

Query: 705 ---NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +++  K    KLG   ++Y  D  Q  H +      +KAG + P  T ++   FG++
Sbjct: 315 TTTDIACAKYRYEKLGADRVLYFIDSRQHQHLQQAWTIVRKAGYV-PESTSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE + R+   ++ KN   EL   E +     VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAVERATALIESKN--PELDAEEKANIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG++ ++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGVSMDE 481



 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELDAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG++ ++L     S  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVSMDEL-----SGDIKITDEKEKALVAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +++  ++L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILIAEDE----SVKQSRLKLAALTAKTIQQGLELLGIETLERM 577



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q  + + +        ++  ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQADEALTDARLGVASQEQQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|417372745|ref|ZP_12142961.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Inverness str. R8-3668]
 gi|353604456|gb|EHC59237.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Inverness str. R8-3668]
          Length = 559

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 17  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 63

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 64  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 120

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 121 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 179

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 180 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 239

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 240 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 299

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 300 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 348

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 349 --HMFGMMLGKDGKPFKTRAGGTVKLADL 375



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 117 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 175

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 176 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 235

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 236 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 295

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 296 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 354

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 355 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 412

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 413 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 461



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 379  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 436

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 437  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 492

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 493  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 546

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 547  GLDTLGIETVERM 559



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 17  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 63

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 64  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 109


>gi|168820735|ref|ZP_02832735.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|197248879|ref|YP_002146112.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|238912513|ref|ZP_04656350.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|409249644|ref|YP_006885466.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|416421671|ref|ZP_11689669.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|416433745|ref|ZP_11697168.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|416436566|ref|ZP_11698368.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|416449028|ref|ZP_11706679.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|416452347|ref|ZP_11708898.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|416456516|ref|ZP_11711520.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|416469395|ref|ZP_11718507.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|416477786|ref|ZP_11721582.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|416491044|ref|ZP_11726936.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|416498178|ref|ZP_11730104.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|416504822|ref|ZP_11733404.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. SARB31]
 gi|416512323|ref|ZP_11737712.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. ATCC BAA710]
 gi|416527964|ref|ZP_11743612.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. LQC 10]
 gi|416535136|ref|ZP_11747500.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. SARB30]
 gi|416542612|ref|ZP_11751678.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|416550557|ref|ZP_11756049.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 29N]
 gi|416562464|ref|ZP_11762164.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 42N]
 gi|416570713|ref|ZP_11766208.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 4441 H]
 gi|416579315|ref|ZP_11771173.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|416585186|ref|ZP_11774739.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|416589928|ref|ZP_11777444.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|416601244|ref|ZP_11784908.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|416604346|ref|ZP_11786106.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|416612021|ref|ZP_11791200.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|416619512|ref|ZP_11795174.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|416629488|ref|ZP_11800152.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|416638792|ref|ZP_11804160.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|416651728|ref|ZP_11811245.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|416660917|ref|ZP_11815302.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|416666437|ref|ZP_11817511.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|416677014|ref|ZP_11822118.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|416699346|ref|ZP_11828622.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|416705025|ref|ZP_11830637.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|416711013|ref|ZP_11834971.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|416716881|ref|ZP_11839173.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|416722016|ref|ZP_11843075.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|416727500|ref|ZP_11847095.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|416737401|ref|ZP_11852633.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|416758754|ref|ZP_11863852.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|416762314|ref|ZP_11866310.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|416771682|ref|ZP_11872917.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|418484068|ref|ZP_13053072.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 80959-06]
 gi|418493751|ref|ZP_13060213.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CT_02035318]
 gi|418497586|ref|ZP_13064003.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CT_02035320]
 gi|418502319|ref|ZP_13068691.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CT_02035321]
 gi|418509523|ref|ZP_13075817.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CT_02035327]
 gi|418527742|ref|ZP_13093698.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008286]
 gi|440764845|ref|ZP_20943869.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SH11G1113]
 gi|440768264|ref|ZP_20947237.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SH08SF124]
 gi|440774713|ref|ZP_20953600.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SH10GFN094]
 gi|238690037|sp|B5F3I0.1|SYR_SALA4 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|197212582|gb|ACH49979.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205342662|gb|EDZ29426.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320085472|emb|CBY95253.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322616909|gb|EFY13817.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618147|gb|EFY15039.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625818|gb|EFY22637.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626270|gb|EFY23080.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632684|gb|EFY29429.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639028|gb|EFY35721.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640468|gb|EFY37121.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646023|gb|EFY42540.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649555|gb|EFY45987.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655463|gb|EFY51771.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660242|gb|EFY56480.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662923|gb|EFY59130.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668108|gb|EFY64267.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674132|gb|EFY70226.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675514|gb|EFY71588.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683072|gb|EFY79088.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686766|gb|EFY82744.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195343|gb|EFZ80523.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199235|gb|EFZ84330.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204040|gb|EFZ89055.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323210677|gb|EFZ95555.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217475|gb|EGA02194.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221966|gb|EGA06356.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224424|gb|EGA08712.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231497|gb|EGA15610.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235939|gb|EGA20018.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240509|gb|EGA24552.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245401|gb|EGA29401.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250172|gb|EGA34064.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253620|gb|EGA37448.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323260282|gb|EGA43903.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266873|gb|EGA50359.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269079|gb|EGA52535.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|363554721|gb|EHL38955.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. LQC 10]
 gi|363557270|gb|EHL41477.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. SARB31]
 gi|363566278|gb|EHL50295.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. SARB30]
 gi|363568340|gb|EHL52323.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 29N]
 gi|363569835|gb|EHL53784.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. ATCC BAA710]
 gi|363572795|gb|EHL56683.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 42N]
 gi|363575166|gb|EHL59024.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 4441 H]
 gi|366059853|gb|EHN24120.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 80959-06]
 gi|366063896|gb|EHN28107.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CT_02035318]
 gi|366075343|gb|EHN39400.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CT_02035320]
 gi|366075675|gb|EHN39727.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CT_02035321]
 gi|366078230|gb|EHN42235.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CT_02035327]
 gi|366827475|gb|EHN54381.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|372204370|gb|EHP17898.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008286]
 gi|436412936|gb|ELP10874.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SH10GFN094]
 gi|436415528|gb|ELP13447.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SH11G1113]
 gi|436418144|gb|ELP16030.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SH08SF124]
          Length = 577

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|194443417|ref|YP_002041175.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|418789544|ref|ZP_13345331.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19447]
 gi|418796941|ref|ZP_13352632.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19567]
 gi|418809462|ref|ZP_13365014.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 21550]
 gi|418813615|ref|ZP_13369136.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 22513]
 gi|418814882|ref|ZP_13370390.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 21538]
 gi|418822669|ref|ZP_13378080.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 22425]
 gi|418833666|ref|ZP_13388585.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM N18486]
 gi|418836664|ref|ZP_13391548.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM N1543]
 gi|418840563|ref|ZP_13395392.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 21554]
 gi|418850597|ref|ZP_13405313.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 37978]
 gi|418853897|ref|ZP_13408582.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19593]
 gi|418868150|ref|ZP_13422593.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 4176]
 gi|421884134|ref|ZP_16315350.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Senftenberg str. SS209]
 gi|238693529|sp|B4SVG0.1|SYR_SALNS RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|194402080|gb|ACF62302.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|379986215|emb|CCF87623.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Senftenberg str. SS209]
 gi|392760785|gb|EJA17620.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19447]
 gi|392770314|gb|EJA27042.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19567]
 gi|392773547|gb|EJA30243.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 21550]
 gi|392774841|gb|EJA31536.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 22513]
 gi|392786926|gb|EJA43474.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 22425]
 gi|392793261|gb|EJA49705.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 21538]
 gi|392795086|gb|EJA51469.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM N18486]
 gi|392801025|gb|EJA57255.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM N1543]
 gi|392811053|gb|EJA67065.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 21554]
 gi|392818447|gb|EJA74331.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 37978]
 gi|392826037|gb|EJA81771.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19593]
 gi|392838056|gb|EJA93620.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 4176]
          Length = 577

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|420258260|ref|ZP_14760998.1| arginyl-tRNA ligase [Yersinia enterocolitica subsp. enterocolitica
           WA-314]
 gi|404514234|gb|EKA28031.1| arginyl-tRNA ligase [Yersinia enterocolitica subsp. enterocolitica
           WA-314]
          Length = 576

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 157/440 (35%), Positives = 235/440 (53%), Gaps = 54/440 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S     +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEPQVRQSAKAQFGDYQANGVMAIAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ +  ++         L  +  K+E+A PGF+N+FL R +   ++++ +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLDGIASKVEIAGPGFINIFLDRQWVASKVEEALKAP 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GVQP    +   ++VD+S+PN+AK+MHVGHLRSTIIGD   R LE+LGH+V+R NHVG
Sbjct: 104 KLGVQPV---EPQTIVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F KRA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFAKRARAYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   + ++V  L+ KGL  
Sbjct: 220 GDEYCRQMWRKLVDITMAQNQIAYDRLNVTLTKDDVMGESLYNTMLPEIVADLKAKGLAV 279

Query: 499 LDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
             +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD ++Y 
Sbjct: 280 ESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  P +
Sbjct: 337 IDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGKP-F 380

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E+ +R
Sbjct: 381 KTRSGGTVKLSDLLDEAIER 400



 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 193/361 (53%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F KRA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFAKRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQIAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNTMLPEIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +  +A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAIERAGKLIAEKN--PDMPADELKQVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ + AGI+  +   
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFKRAGIDESNLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  135 bits (341), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 108/178 (60%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +  +AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVVEAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ + AGI+  +L     + P+ +  ++E ALA  LL+  +V+  V R+   H +C YL
Sbjct: 468  VSVFKRAGIDESNL-----TLPLVITEDREAALATRLLQFEEVITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D+E   ++    RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNADSEESRQS----RLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S     +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEPQVRQSAKAQFGDYQANGVMAIAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ +  ++         L  +  K+E A PGF+N+FL R +   ++++ +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLDGIASKVEIAGPGFINIFLDRQWVASKVEEALKAP 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             GVQP    +   ++VD+S+PN+A++
Sbjct: 104 KLGVQPV---EPQTIVVDYSAPNVAKQ 127


>gi|168238541|ref|ZP_02663599.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737429|ref|YP_002114945.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|437837283|ref|ZP_20845718.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SARB17]
 gi|238689771|sp|B4TYT3.1|SYR_SALSV RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|194712931|gb|ACF92152.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288679|gb|EDY28054.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|435299181|gb|ELO75349.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SARB17]
          Length = 577

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|437719619|ref|ZP_20828683.1| arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 16-16]
 gi|435295179|gb|ELO71705.1| arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648901 16-16]
          Length = 570

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 104/186 (55%), Gaps = 14/186 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILN 1112
              D L 
Sbjct: 565  GLDTLG 570



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|16765251|ref|NP_460866.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167994213|ref|ZP_02575305.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|374980932|ref|ZP_09722262.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|378445300|ref|YP_005232932.1| ArgRS [Salmonella enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|378450516|ref|YP_005237875.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|378699781|ref|YP_005181738.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|378984475|ref|YP_005247630.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|378989255|ref|YP_005252419.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
 gi|379701094|ref|YP_005242822.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. ST4/74]
 gi|383496588|ref|YP_005397277.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 798]
 gi|422026106|ref|ZP_16372515.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm1]
 gi|422031136|ref|ZP_16377315.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm2]
 gi|427550368|ref|ZP_18927822.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm8]
 gi|427566454|ref|ZP_18932537.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm9]
 gi|427586550|ref|ZP_18937326.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm3]
 gi|427609903|ref|ZP_18942191.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm4]
 gi|427633761|ref|ZP_18947086.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm6]
 gi|427656149|ref|ZP_18951851.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm10]
 gi|427661296|ref|ZP_18956763.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm11]
 gi|427668928|ref|ZP_18961564.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm12]
 gi|427767310|ref|ZP_18966738.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm5]
 gi|325530298|sp|E1WGF0.1|SYR_SALTS RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|325530299|sp|P0CL51.1|SYR_SALTY RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|16420446|gb|AAL20825.1| arginine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|205327860|gb|EDZ14624.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247079|emb|CBG24900.1| ArgRS [Salmonella enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267993894|gb|ACY88779.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158429|emb|CBW17938.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912903|dbj|BAJ36877.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321224552|gb|EFX49615.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130193|gb|ADX17623.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. ST4/74]
 gi|332988802|gb|AEF07785.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
 gi|380463409|gb|AFD58812.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 798]
 gi|414018397|gb|EKT02050.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm1]
 gi|414019073|gb|EKT02698.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm8]
 gi|414021100|gb|EKT04663.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm2]
 gi|414032691|gb|EKT15684.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm9]
 gi|414034566|gb|EKT17492.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm3]
 gi|414037625|gb|EKT20387.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm4]
 gi|414047490|gb|EKT29768.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm10]
 gi|414048983|gb|EKT31210.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm6]
 gi|414053464|gb|EKT35460.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm11]
 gi|414059695|gb|EKT41252.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm12]
 gi|414065225|gb|EKT46000.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. STm5]
          Length = 577

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (568), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKANIDEQ 479



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKANIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|56413172|ref|YP_150247.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362098|ref|YP_002141735.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|213163291|ref|ZP_03349001.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213426390|ref|ZP_03359140.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|81361941|sp|Q5PMZ2.1|SYR_SALPA RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|238690743|sp|B5BH46.1|SYR_SALPK RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|56127429|gb|AAV76935.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093575|emb|CAR59038.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 577

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRTGGTVKLADL 393



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|238792571|ref|ZP_04636204.1| Arginyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238728206|gb|EEQ19727.1| Arginyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 576

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 155/433 (35%), Positives = 230/433 (53%), Gaps = 57/433 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADSEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L+ +  K+E+A PGF+N+FL R +  E+++  +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLSGIASKVEIAGPGFINIFLDRQWVAEKVEHALTAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V+P T      ++VD+S+PN+AK+MHVGHLRSTIIGD   R LE+LGH+V+R N
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFAQRARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRQMWRKLVDITMAQNQIAYDRLNVTLTKDDVMGESLYNAMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++      F
Sbjct: 334 LYYIDTRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLGKDGKPF 380

Query: 608 PDYLTKSPPIADL 620
                 +  +ADL
Sbjct: 381 KTRSGGTVKLADL 393



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 191/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F +RA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFAQRARAYVVKLQGGDEYCRQMWRKLVDITMAQNQIAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNAMLPGIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDTRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKL++LLDE + R+   + +KN   ++   EL +   A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLADLLDEAIERAGKLIAEKN--PDMPADELKQVVDA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ + AGI+  +   
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFKRAGIDESNLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 106/178 (59%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +   AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVVDAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ + AGI+  +L     + P+ +  ++E ALA  LL+  +V+  V R+   H +C YL
Sbjct: 468  VSVFKRAGIDESNL-----TLPLVITEDREAALATRLLQFEEVITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  ++E     +   RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNAESE----EIRQSRLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADSEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++         L+ +  K+E A PGF+N+FL R +  E+++  +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLSGIASKVEIAGPGFINIFLDRQWVAEKVEHALTAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              V  V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQ 127


>gi|200390366|ref|ZP_03216977.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|207856570|ref|YP_002243221.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|421358615|ref|ZP_15808912.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 622731-39]
 gi|421362585|ref|ZP_15812837.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 639016-6]
 gi|421367785|ref|ZP_15817978.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 640631]
 gi|421370547|ref|ZP_15820712.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 77-0424]
 gi|421378035|ref|ZP_15828124.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607307-6]
 gi|421382644|ref|ZP_15832690.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 485549-17]
 gi|421387628|ref|ZP_15837627.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 596866-22]
 gi|421391731|ref|ZP_15841697.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 596866-70]
 gi|421395065|ref|ZP_15845004.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 629164-26]
 gi|421401329|ref|ZP_15851205.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 629164-37]
 gi|421403069|ref|ZP_15852923.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 639672-46]
 gi|421410436|ref|ZP_15860217.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 639672-50]
 gi|421412701|ref|ZP_15862455.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 77-1427]
 gi|421416694|ref|ZP_15866413.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 77-2659]
 gi|421421688|ref|ZP_15871356.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 78-1757]
 gi|421425136|ref|ZP_15874772.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 22510-1]
 gi|421436580|ref|ZP_15886107.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648905 5-18]
 gi|421441358|ref|ZP_15890828.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 648901 6-18]
 gi|421446705|ref|ZP_15896117.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 50-3079]
 gi|421447814|ref|ZP_15897210.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 58-6482]
 gi|436596619|ref|ZP_20512565.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 22704]
 gi|436730359|ref|ZP_20519274.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. SE30663]
 gi|436797522|ref|ZP_20523268.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CHS44]
 gi|436811430|ref|ZP_20530310.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1882]
 gi|436815801|ref|ZP_20533352.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1884]
 gi|436838948|ref|ZP_20537268.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1594]
 gi|436851395|ref|ZP_20541994.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1566]
 gi|436858159|ref|ZP_20546679.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1580]
 gi|436865334|ref|ZP_20551301.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1543]
 gi|436875493|ref|ZP_20557400.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1441]
 gi|436883384|ref|ZP_20561813.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1810]
 gi|436887756|ref|ZP_20564085.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1558]
 gi|436896454|ref|ZP_20569210.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1018]
 gi|436906433|ref|ZP_20575279.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1010]
 gi|436911618|ref|ZP_20577447.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1729]
 gi|436921093|ref|ZP_20583564.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_0895]
 gi|436930523|ref|ZP_20588748.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_0899]
 gi|436935570|ref|ZP_20591010.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1457]
 gi|436942759|ref|ZP_20595705.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1747]
 gi|436951748|ref|ZP_20600803.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_0968]
 gi|436964543|ref|ZP_20606179.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1444]
 gi|436971480|ref|ZP_20609873.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1445]
 gi|436985550|ref|ZP_20615070.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1559]
 gi|436991483|ref|ZP_20617494.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1565]
 gi|437012304|ref|ZP_20624817.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1808]
 gi|437020726|ref|ZP_20627537.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1811]
 gi|437029982|ref|ZP_20631164.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_0956]
 gi|437042379|ref|ZP_20635970.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1455]
 gi|437052456|ref|ZP_20641879.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1575]
 gi|437058090|ref|ZP_20644937.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1725]
 gi|437067403|ref|ZP_20650323.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1745]
 gi|437075781|ref|ZP_20654144.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1791]
 gi|437086656|ref|ZP_20660665.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1795]
 gi|437095368|ref|ZP_20664472.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 576709]
 gi|437100424|ref|ZP_20665911.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 635290-58]
 gi|437134503|ref|ZP_20678927.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 607308-19]
 gi|437139746|ref|ZP_20682010.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607307-2]
 gi|437147114|ref|ZP_20686666.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607308-9]
 gi|437155405|ref|ZP_20691624.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 629163]
 gi|437158120|ref|ZP_20693062.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. SE15-1]
 gi|437171679|ref|ZP_20700783.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_N202]
 gi|437177348|ref|ZP_20703828.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_56-3991]
 gi|437187556|ref|ZP_20710037.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_76-3618]
 gi|437239451|ref|ZP_20714273.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 13183-1]
 gi|437261146|ref|ZP_20718216.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_81-2490]
 gi|437265746|ref|ZP_20720561.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SL909]
 gi|437281974|ref|ZP_20728975.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SL913]
 gi|437286589|ref|ZP_20730243.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_69-4941]
 gi|437308439|ref|ZP_20735480.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 638970-15]
 gi|437328688|ref|ZP_20740983.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 17927]
 gi|437344049|ref|ZP_20746063.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CHS4]
 gi|437431637|ref|ZP_20756103.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 543463 22-17]
 gi|437433178|ref|ZP_20756271.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 543463 40-18]
 gi|437462603|ref|ZP_20762754.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 561362 1-1]
 gi|437478532|ref|ZP_20767545.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 642044 4-1]
 gi|437487169|ref|ZP_20769850.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 642046 4-7]
 gi|437506357|ref|ZP_20775640.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648898 4-5]
 gi|437538431|ref|ZP_20782001.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648899 3-17]
 gi|437553338|ref|ZP_20783980.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 648900 1-16]
 gi|437575224|ref|ZP_20790020.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 648901 1-17]
 gi|437585779|ref|ZP_20793059.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 648901 39-2]
 gi|437601489|ref|ZP_20797733.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 648902 6-8]
 gi|437617260|ref|ZP_20802896.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 648903 1-6]
 gi|437678314|ref|ZP_20817673.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 642044 8-1]
 gi|437688247|ref|ZP_20819681.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 561362 9-7]
 gi|438048475|ref|ZP_20856106.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 50-5646]
 gi|438090068|ref|ZP_20860370.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 81-2625]
 gi|438101202|ref|ZP_20864153.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 62-1976]
 gi|438112462|ref|ZP_20869059.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 53-407]
 gi|445167824|ref|ZP_21394654.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. SE8a]
 gi|445217323|ref|ZP_21402246.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 20037]
 gi|445219930|ref|ZP_21402869.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. SE10]
 gi|445338562|ref|ZP_21416135.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 18569]
 gi|238690436|sp|B5R142.1|SYR_SALEP RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|199602811|gb|EDZ01357.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|206708373|emb|CAR32677.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|395986305|gb|EJH95469.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 640631]
 gi|395987055|gb|EJH96218.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 622731-39]
 gi|395990409|gb|EJH99540.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 639016-6]
 gi|395997340|gb|EJI06381.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607307-6]
 gi|395997752|gb|EJI06792.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 485549-17]
 gi|396006630|gb|EJI15593.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 77-0424]
 gi|396008453|gb|EJI17387.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 596866-22]
 gi|396010694|gb|EJI19606.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 596866-70]
 gi|396013802|gb|EJI22689.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 629164-26]
 gi|396021394|gb|EJI30220.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 629164-37]
 gi|396022569|gb|EJI31382.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 639672-50]
 gi|396030100|gb|EJI38835.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 639672-46]
 gi|396039789|gb|EJI48413.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 77-1427]
 gi|396041003|gb|EJI49626.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 78-1757]
 gi|396044871|gb|EJI53466.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 77-2659]
 gi|396052922|gb|EJI61427.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648905 5-18]
 gi|396057606|gb|EJI66076.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 22510-1]
 gi|396062287|gb|EJI70700.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 50-3079]
 gi|396064961|gb|EJI73344.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 648901 6-18]
 gi|396074111|gb|EJI82402.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 58-6482]
 gi|434960864|gb|ELL54206.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CHS44]
 gi|434964061|gb|ELL57083.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1882]
 gi|434973917|gb|ELL66305.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1884]
 gi|434976932|gb|ELL69108.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 22704]
 gi|434980256|gb|ELL72177.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1594]
 gi|434980678|gb|ELL72587.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. SE30663]
 gi|434986697|gb|ELL78348.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1566]
 gi|434990311|gb|ELL81861.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1580]
 gi|434995084|gb|ELL86401.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1441]
 gi|434996369|gb|ELL87685.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1543]
 gi|435001829|gb|ELL92918.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1810]
 gi|435009466|gb|ELM00252.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1558]
 gi|435015010|gb|ELM05567.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1010]
 gi|435016343|gb|ELM06869.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1018]
 gi|435025863|gb|ELM15994.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1729]
 gi|435027215|gb|ELM17344.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_0895]
 gi|435032178|gb|ELM22122.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_0899]
 gi|435038408|gb|ELM28189.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1457]
 gi|435042958|gb|ELM32675.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1747]
 gi|435048400|gb|ELM37965.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1444]
 gi|435052215|gb|ELM41717.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_0968]
 gi|435057769|gb|ELM47138.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1445]
 gi|435062390|gb|ELM51572.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1559]
 gi|435063624|gb|ELM52772.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1808]
 gi|435068060|gb|ELM57089.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1565]
 gi|435079354|gb|ELM68065.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1811]
 gi|435083016|gb|ELM71627.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_0956]
 gi|435084304|gb|ELM72890.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1455]
 gi|435091056|gb|ELM79457.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. CDC_2010K_1575]
 gi|435093903|gb|ELM82242.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1725]
 gi|435096124|gb|ELM84397.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1745]
 gi|435102802|gb|ELM90905.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1795]
 gi|435105078|gb|ELM93115.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CDC_2010K_1791]
 gi|435109745|gb|ELM97691.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 576709]
 gi|435119982|gb|ELN07584.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 607308-19]
 gi|435125220|gb|ELN12668.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 635290-58]
 gi|435131151|gb|ELN18378.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607307-2]
 gi|435134744|gb|ELN21870.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 607308-9]
 gi|435138273|gb|ELN25300.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 629163]
 gi|435146201|gb|ELN32995.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_N202]
 gi|435152782|gb|ELN39405.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. SE15-1]
 gi|435155028|gb|ELN41586.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_56-3991]
 gi|435156800|gb|ELN43271.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_76-3618]
 gi|435163602|gb|ELN49738.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_81-2490]
 gi|435168592|gb|ELN54424.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SL913]
 gi|435177110|gb|ELN62442.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. SL909]
 gi|435181873|gb|ELN66912.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 13183-1]
 gi|435184486|gb|ELN69415.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CVM_69-4941]
 gi|435186034|gb|ELN70890.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 638970-15]
 gi|435190951|gb|ELN75523.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 17927]
 gi|435191103|gb|ELN75670.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. CHS4]
 gi|435198648|gb|ELN82805.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 543463 22-17]
 gi|435214259|gb|ELN97084.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 543463 40-18]
 gi|435219269|gb|ELO01632.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 561362 1-1]
 gi|435221351|gb|ELO03624.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 642044 4-1]
 gi|435233070|gb|ELO14127.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 642046 4-7]
 gi|435234548|gb|ELO15402.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648898 4-5]
 gi|435238768|gb|ELO19388.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 648899 3-17]
 gi|435244985|gb|ELO25092.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 648900 1-16]
 gi|435245189|gb|ELO25276.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 648901 1-17]
 gi|435260899|gb|ELO40088.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 648901 39-2]
 gi|435261025|gb|ELO40187.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 648903 1-6]
 gi|435261259|gb|ELO40420.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 648902 6-8]
 gi|435273444|gb|ELO51713.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 642044 8-1]
 gi|435282964|gb|ELO60562.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 561362 9-7]
 gi|435316639|gb|ELO89752.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 81-2625]
 gi|435319259|gb|ELO92112.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 50-5646]
 gi|435324774|gb|ELO96702.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 62-1976]
 gi|435330540|gb|ELP01806.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. 53-407]
 gi|444857559|gb|ELX82564.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 20037]
 gi|444865121|gb|ELX89901.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. SE8a]
 gi|444870823|gb|ELX95295.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. SE10]
 gi|444872699|gb|ELX97017.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 18569]
          Length = 577

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|146280942|ref|YP_001171095.1| arginyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|166232826|sp|A4VH02.1|SYR_PSEU5 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|145569147|gb|ABP78253.1| arginyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 579

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 224/405 (55%), Gaps = 46/405 (11%)

Query: 211 LSDVFTHAVQVAF---------PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           + D   H +Q A          PE       V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQALVRLTSEGVLPEGLTPAIQVENTKDK---SHGDFASNIAMMLAKPAGM 57

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
           K     P ++A+ +       +A  P  A+ I K+E+A PGF+N F +     ++++  +
Sbjct: 58  K-----PRELAEKL-------IAALPQDAQ-ISKVEIAGPGFLNFFQNSDALAQRLETAL 104

Query: 322 VNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
            +  +     + K RV++D SSPN+AKEMHVGHLRSTIIGD + R+LE+LG +V+R NHV
Sbjct: 105 ADAQLAVHKASAKQRVVIDLSSPNLAKEMHVGHLRSTIIGDAVGRVLEFLGDEVIRQNHV 164

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGML+A+L++K          +ADL+ FY+ +K+RFDE   F  RA + VV LQ
Sbjct: 165 GDWGTQFGMLLAYLEEKPA---AAESELADLEQFYRAAKQRFDESPEFADRARELVVKLQ 221

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLL 497
             D      W    D+S    QKIYDRLNV LT    +GES Y   +  +V  L +KGLL
Sbjct: 222 AGDAQCLSLWTRFNDISLSHCQKIYDRLNVKLTPADVKGESAYNADLADIVEALREKGLL 281

Query: 498 ELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
             D+G + ++       +   +P+ + K+ GG+ Y T+DLAA+R R ++  AD ++Y  D
Sbjct: 282 TEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLYATTDLAAMRYRSQQLHADRVLYFVD 341

Query: 553 LGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
             Q +HF++  E       ++R   ++ H+ ++L H+G +GT  G
Sbjct: 342 QRQALHFQMAFE-------VARRAGFV-HEGMQLEHMG-FGTMNG 377



 Score =  229 bits (583), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 188/345 (54%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R+LE+LG +V+R NHVGDWGTQFGML+A+L++K          +ADL+ FY
Sbjct: 140 STIIGDAVGRVLEFLGDEVIRQNHVGDWGTQFGMLLAYLEEKPA---AAESELADLEQFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA + VV LQ  D      W    D+S    QKIYDRLNV LT  
Sbjct: 197 RAAKQRFDESPEFADRARELVVKLQAGDAQCLSLWTRFNDISLSHCQKIYDRLNVKLTPA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   +  +V  L +KG L+                       + +K G     
Sbjct: 257 DVKGESAYNADLADIVEALREKGLLTEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF++  E A++AG ++    +++ +GFG +
Sbjct: 317 ATTDLAAMRYRSQQLHADRVLYFVDQRQALHFQMAFEVARRAGFVHEG-MQLEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+   +K KN   EL   EL +  +AV    +K
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLDEAEQRAYTLVKGKN--PELDEAELRQIARAVGISAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML   GNTA YLLYAYTR+AS+ R  G
Sbjct: 434 YADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYTRVASVFRKLG 478



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   EL +  +AV    +KYADLS +R  DY F+F+ ML   GNTA YLLYAYT
Sbjct: 409  KGKNPELDEAELRQIARAVGISAVKYADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+ R  G   +++     S  + L+ E+E ALA  L +  +VL  V      H LC 
Sbjct: 469  RVASVFRKLGKGIDEI-----SGQIQLDAEQELALAAKLAQFGEVLNSVGEKGEPHLLCA 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY++C  +  + E + ++    RL LA  T + +K+
Sbjct: 524  YLYDLAGLFSSFYEHCPILGAEQEAQKQS----RLRLAALTGRTLKQ 566



 Score = 43.5 bits (101), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 26/148 (17%)

Query: 15  LSDVFTHAVQVAF---------PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           + D   H +Q A          PE       V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQALVRLTSEGVLPEGLTPAIQVENTKDK---SHGDFASNIAMMLAKPAGM 57

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           K     P ++A+ +       +A  P  A+ I K+E A PGF+N F +     ++++  +
Sbjct: 58  K-----PRELAEKL-------IAALPQDAQ-ISKVEIAGPGFLNFFQNSDALAQRLETAL 104

Query: 126 VNG-VQPPTLNKKLRVLVDFSSPNIARK 152
            +  +     + K RV++D SSPN+A++
Sbjct: 105 ADAQLAVHKASAKQRVVIDLSSPNLAKE 132


>gi|437706447|ref|ZP_20825376.1| arginyl-tRNA ligase, partial [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 543463 42-20]
 gi|435291653|gb|ELO68463.1| arginyl-tRNA ligase, partial [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 543463 42-20]
          Length = 559

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 17  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 63

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 64  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 120

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 121 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 179

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 180 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 239

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 240 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 299

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 300 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 348

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 349 --HMFGMMLGKDGKPFKTRAGGTVKLADL 375



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 117 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 175

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 176 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 235

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 236 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 295

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 296 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 354

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 355 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 412

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 413 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 461



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 379  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 436

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 437  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 492

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 493  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 546

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 547  GLDTLGIETVERM 559



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 17  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 63

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 64  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKE 109


>gi|417348444|ref|ZP_12127391.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Gaminara str. A4-567]
 gi|353575592|gb|EHC38291.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Gaminara str. A4-567]
          Length = 558

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 16  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 62

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 63  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 119

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 120 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 178

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 179 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 238

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 239 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 298

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 299 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 347

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 348 --HMFGMMLGKDGKPFKTRAGGTVKLADL 374



 Score =  223 bits (567), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 116 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 174

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 175 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 234

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 235 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 294

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 295 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 353

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 354 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 411

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 412 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 460



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 378  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 435

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 436  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 491

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 492  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 545

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 546  GLDTLGIETVERM 558



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 16  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 62

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 63  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 108


>gi|168234027|ref|ZP_02659085.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194468774|ref|ZP_03074758.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455138|gb|EDX43977.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205331975|gb|EDZ18739.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 577

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 214/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F  RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAARARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 185/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F  RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAARARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN +  +   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPN--MPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN +  +   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKNPN--MPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|294635811|ref|ZP_06714268.1| arginine--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|451964548|ref|ZP_21917812.1| arginyl-tRNA synthetase [Edwardsiella tarda NBRC 105688]
 gi|291090846|gb|EFE23407.1| arginine--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|451316668|dbj|GAC63174.1| arginyl-tRNA synthetase [Edwardsiella tarda NBRC 105688]
          Length = 577

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 154/430 (35%), Positives = 227/430 (52%), Gaps = 50/430 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  +SD  T A+  A    G    S A        +FGD+Q N  MA  K       
Sbjct: 1   MNIQALISDKVTQALVAA----GAPADSEALVRPSAKVQFGDYQANGIMAAAKKMA---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ + +        N +L  +  K+E+A PGF+N+FL   +  +Q+   +   
Sbjct: 53  -MPPRQLAEQVVA--------NLALDGIASKVEIAGPGFINIFLDAAWLADQVDAALADP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V P T      ++VD+S+PN+AKEMHVGHLRSTIIGD   R LE+LGH+V+R N
Sbjct: 104 RLGVARVAPQT------IVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+    +       +ADL+AFY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLERVQSESQAGEMALADLEAFYREAKKHYDEDAAFAERARGYVVK 217

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++ R  Q+ YDRLNVTLT+    GES Y   +  +V  L+ KG
Sbjct: 218 LQGGDEYCREMWRKLVDITMRQNQRNYDRLNVTLTDDDVMGESLYNPMLPGIVADLKAKG 277

Query: 496 LLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L    +G  +++ +   ++   PM ++  K DGG+ Y T+D+A  + R E   A+ I+Y 
Sbjct: 278 LATESEGATVVFLDEFKNKEGEPMGVIVQKKDGGYLYTTTDIACAKYRYETLGANRILYY 337

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q  H  L++   I+     R   Y+   V   +H+      FGM++      F   
Sbjct: 338 IDSRQ--HQHLMQAWAIV-----RKAGYVPESVSLEHHM------FGMMLGKDGKPFKTR 384

Query: 611 LTKSPPIADL 620
              +  +ADL
Sbjct: 385 AGGTIKLADL 394



 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 144/354 (40%), Positives = 191/354 (53%), Gaps = 57/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+    +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLERVQSESQAGEMAL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+AFY+E+KK +DED  F +RA   VV LQ  D   ++ W  + D++ R  Q+ YDRL
Sbjct: 188 ADLEAFYREAKKHYDEDAAFAERARGYVVKLQGGDEYCREMWRKLVDITMRQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   +  +V  L+ KG                         + + K
Sbjct: 248 NVTLTDDDVMGESLYNPMLPGIVADLKAKGLATESEGATVVFLDEFKNKEGEPMGVIVQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       I+Y  D  Q  H        +KAG + P    ++
Sbjct: 308 KDGGYLYTTTDIACAKYRYETLGANRILYYIDSRQHQHLMQAWAIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KL++LLDE   R+   + DKN   EL+  EL E  + 
Sbjct: 367 HHMFGMMLGKDGKPFKTRAGGTIKLADLLDEATERAAKLIADKN--PELSGDELKELVEV 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           V  G +KYADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ASI + AGI+
Sbjct: 425 VGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGID 478



 Score =  139 bits (350), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 107/188 (56%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   + DKN   EL+  EL E  + V  G +KYADLS NR  DY+F +D ML   GNTA
Sbjct: 401  RAAKLIADKN--PELSGDELKELVEVVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTA 458

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI + AGI+   L     S  V L  E+E ALA  L++  + ++ V R+
Sbjct: 459  PYMQYAYTRVASIFKRAGIDENSL-----SGAVILTEEREKALATRLMQFEETILTVARE 513

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLY+++  FS FY+ C  +  D E     V   RL LA  TA+ +K   D L
Sbjct: 514  GTPHVMCAYLYEVAGLFSSFYEACPILNADDE----HVRASRLKLAALTARTLKTGLDTL 569

Query: 1112 NIRTVHKM 1119
             I+TV +M
Sbjct: 570  GIKTVERM 577



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 31/162 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  +SD  T A+  A    G    S A        +FGD+Q N  MA  K       
Sbjct: 1   MNIQALISDKVTQALVAA----GAPADSEALVRPSAKVQFGDYQANGIMAAAKKMA---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ + +        N +L  +  K+E A PGF+N+FL   +  +Q+   +   
Sbjct: 53  -MPPRQLAEQVVA--------NLALDGIASKVEIAGPGFINIFLDAAWLADQVDAALADP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
              V  V P T      ++VD+S+PN+A++      HL S I
Sbjct: 104 RLGVARVAPQT------IVVDYSAPNVAKE--MHVGHLRSTI 137


>gi|123442647|ref|YP_001006624.1| arginyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166200587|sp|A1JRM9.1|SYR_YERE8 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|122089608|emb|CAL12457.1| arginyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 576

 Score =  238 bits (607), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 157/440 (35%), Positives = 235/440 (53%), Gaps = 54/440 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S     +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEPQVRQSAKAQFGDYQANGVMAIAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ +  ++         L  +  K+E+A PGF+N+FL R +   ++++ +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLDGIASKVEIAGPGFINIFLDRQWVASKVEEALKAP 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GVQP    +   ++VD+S+PN+AK+MHVGHLRSTIIGD   R LE+LGH+V+R NHVG
Sbjct: 104 KLGVQPV---EPQTIVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F KRA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFAKRARAYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   + ++V  L+ KGL  
Sbjct: 220 GDEYCRQMWRKLVDITMAQNQIAYDRLNVTLTKDDVMGESLYNTMLPEIVADLKAKGLAV 279

Query: 499 LDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
             +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD ++Y 
Sbjct: 280 ESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  P +
Sbjct: 337 IDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGKP-F 380

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E+ +R
Sbjct: 381 KTRSGGTVKLSDLLDEAIER 400



 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 193/361 (53%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F KRA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFAKRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQIAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNTMLPEIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +  +A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAIERAGKLIAEKN--PDMPADELKQVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ + AGI+  +   
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFKRAGIDESNLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 108/178 (60%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +  +AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVVEAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ + AGI+  +L     + P+ +  ++E ALA  LL+  +++  V R+   H +C YL
Sbjct: 468  VSVFKRAGIDESNL-----TLPLVITEDREAALATRLLQFEEIITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D+E   ++    RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNADSEESRQS----RLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S     +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEPQVRQSAKAQFGDYQANGVMAIAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ +  ++         L  +  K+E A PGF+N+FL R +   ++++ +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLDGIASKVEIAGPGFINIFLDRQWVASKVEEALKAP 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             GVQP    +   ++VD+S+PN+A++
Sbjct: 104 KLGVQPV---EPQTIVVDYSAPNVAKQ 127


>gi|386019240|ref|YP_005937264.1| arginyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
 gi|327479212|gb|AEA82522.1| arginyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 579

 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/362 (39%), Positives = 211/362 (58%), Gaps = 34/362 (9%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P ++A+ +       +A  P  A+V  K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRELAEKL-------IAALPQDAQV-SKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 363
           N F +     ++++  + +  +     + K RV++D SSPN+AKEMHVGHLRSTIIGD +
Sbjct: 88  NFFQNSDALAQRLETALADAQLAVHKASAKQRVVIDLSSPNLAKEMHVGHLRSTIIGDAV 147

Query: 364 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 423
            R+LE+LG +V+R NHVGDWGTQFGML+A+L++K          +ADL+ FY+ +K+RFD
Sbjct: 148 GRVLEFLGDEVIRQNHVGDWGTQFGMLLAYLEEKPA---AAESELADLEQFYRAAKQRFD 204

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFY 480
           E   F  RA + VV LQ  D      W    D+S    QKIYDRLNV LT    +GES Y
Sbjct: 205 ESPEFADRARELVVKLQAGDAQCLSLWTRFNDISLSHCQKIYDRLNVKLTPADVKGESAY 264

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAI 535
              +  +V  L +KGLL  D+G + ++       +   +P+ + K+ GG+ Y T+DLAA+
Sbjct: 265 NADLADIVEALREKGLLTEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLYATTDLAAM 324

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 595
           R R ++  AD ++Y  D  Q +HF++  E       ++R   ++ H+ ++L H+G +GT 
Sbjct: 325 RYRSQQLHADRVLYFVDQRQALHFQMAFE-------VARRAGFV-HEGMQLEHMG-FGTM 375

Query: 596 FG 597
            G
Sbjct: 376 NG 377



 Score =  229 bits (583), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 188/345 (54%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R+LE+LG +V+R NHVGDWGTQFGML+A+L++K          +ADL+ FY
Sbjct: 140 STIIGDAVGRVLEFLGDEVIRQNHVGDWGTQFGMLLAYLEEKPA---AAESELADLEQFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA + VV LQ  D      W    D+S    QKIYDRLNV LT  
Sbjct: 197 RAAKQRFDESPEFADRARELVVKLQAGDAQCLSLWTRFNDISLSHCQKIYDRLNVKLTPA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   +  +V  L +KG L+                       + +K G     
Sbjct: 257 DVKGESAYNADLADIVEALREKGLLTEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF++  E A++AG ++    +++ +GFG +
Sbjct: 317 ATTDLAAMRYRSQQLHADRVLYFVDQRQALHFQMAFEVARRAGFVHEG-MQLEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+   +K KN   EL   EL +  +AV    +K
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLDEAEQRAYALVKGKN--PELEEAELRQIARAVGISAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML   GNTA YLLYAYTR+AS+ R  G
Sbjct: 434 YADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYTRVASVFRKLG 478



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   EL +  +AV    +KYADLS +R  DY F+F+ ML   GNTA YLLYAYT
Sbjct: 409  KGKNPELEEAELRQIARAVGISAVKYADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+ R  G   +++     S  + L+ E+E ALA  L +  +VL  V      H LC 
Sbjct: 469  RVASVFRKLGKGIDEI-----SGHIQLDAEQELALAAKLAQFGEVLNSVGEKGEPHLLCA 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY++C  +  + + + ++    RL LA  T + +K+
Sbjct: 524  YLYDLAGLFSSFYEHCPILSAEQDAQKQS----RLRLAALTGRTLKQ 566



 Score = 43.1 bits (100), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 14/105 (13%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K    K     P ++A+ +       +A  P  A+V  K+E A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRELAEKL-------IAALPQDAQV-SKVEIAGPGFL 87

Query: 109 NVFLSRVYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARK 152
           N F +     ++++  + +  +     + K RV++D SSPN+A++
Sbjct: 88  NFFQNSDALAQRLETALADAQLAVHKASAKQRVVIDLSSPNLAKE 132


>gi|417473864|ref|ZP_12169152.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Rubislaw str. A4-653]
 gi|353649657|gb|EHC92232.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Rubislaw str. A4-653]
          Length = 558

 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 16  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 62

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 63  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 119

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 120 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 178

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 179 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 238

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 239 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 298

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 299 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 347

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 348 --HMFGMMLGKDGKPFKTRAGGTVKLADL 374



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 116 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 174

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 175 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 234

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 235 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 294

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 295 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 353

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 354 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 411

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 412 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 460



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 378  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 435

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 436  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 491

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 492  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 545

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 546  GLDTLGIETVERM 558



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 16  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 62

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 63  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 108


>gi|417538714|ref|ZP_12191218.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Wandsworth str. A4-580]
 gi|353665921|gb|EHD03895.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Wandsworth str. A4-580]
          Length = 559

 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 17  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 63

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 64  FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 120

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 121 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 179

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 180 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 239

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 240 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 299

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 300 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 348

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 349 --HMFGMMLGKDGKPFKTRAGGTVKLADL 375



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 117 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 175

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 176 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 235

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 236 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 295

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 296 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 354

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 355 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 412

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 413 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 461



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 379  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 436

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 437  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 492

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 493  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 546

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 547  GLDTLGIETVERM 559



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 17  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 63

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 64  FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKE 109


>gi|224583587|ref|YP_002637385.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468114|gb|ACN45944.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 563

 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 21  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 67

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 68  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 124

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 125 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 183

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 184 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 243

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 244 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 303

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 304 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 352

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 353 --HMFGMMLGKDGKPFKTRAGGTVKLADL 379



 Score =  223 bits (567), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 121 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 179

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 180 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 239

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 240 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 299

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 300 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 358

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 359 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 416

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 417 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 465



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 383  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 440

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 441  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 496

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 497  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 550

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 551  GLDTLGIETVERM 563



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 21  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 67

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 68  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 113


>gi|417414839|ref|ZP_12158652.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Mississippi str. A4-633]
 gi|417457488|ref|ZP_12163829.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Montevideo str. S5-403]
 gi|353624464|gb|EHC73497.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Mississippi str. A4-633]
 gi|353633833|gb|EHC80547.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Montevideo str. S5-403]
          Length = 558

 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 16  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 62

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 63  FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 119

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 120 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 178

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 179 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 238

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 239 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 298

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 299 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 347

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 348 --HMFGMMLGKDGKPFKTRAGGTVKLADL 374



 Score =  222 bits (566), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 116 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 174

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 175 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 234

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 235 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 294

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 295 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 353

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 354 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 411

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 412 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 460



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 378  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 435

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 436  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 491

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + +     V   RL LA+ TAK +K   
Sbjct: 492  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA----VRNSRLKLAQLTAKTLKLGL 547

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 548  DTLGIETVERM 558



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 16  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 62

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 63  FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKE 108


>gi|205352385|ref|YP_002226186.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|375123187|ref|ZP_09768351.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. SG9]
 gi|378955472|ref|YP_005212959.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum/pullorum str. RKS5078]
 gi|438133157|ref|ZP_20873950.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Pullorum str. ATCC 9120]
 gi|445137936|ref|ZP_21383789.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9184]
 gi|238690484|sp|B5R8C8.1|SYR_SALG2 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|205272166|emb|CAR37024.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627437|gb|EGE33780.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. SG9]
 gi|357206083|gb|AET54129.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum/pullorum str. RKS5078]
 gi|434941101|gb|ELL47599.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Pullorum str. ATCC 9120]
 gi|444843851|gb|ELX69098.1| arginyl-tRNA ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9184]
          Length = 577

 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLSEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLSEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|359298724|ref|ZP_09184563.1| arginyl-tRNA synthetase [Haemophilus [parainfluenzae] CCUG 13788]
          Length = 575

 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/373 (39%), Positives = 209/373 (56%), Gaps = 44/373 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+  A    G    + A   +    +FGD+Q N AM   K       
Sbjct: 1   MNIQQILSDKIKQAMIAA----GADENAEALVRQSGKPEFGDYQANGAMGAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ I          N +L  + +K+E+A PGF+N+FLS        KD + NG
Sbjct: 53  -INPREFAQKILD--------NLNLDGIAEKLEIAGPGFINIFLS--------KDWLANG 95

Query: 325 VQPP---------TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
                        T N +  ++VD+SSPN+AKEMHVGHLRSTIIGD + R LE+LG++V+
Sbjct: 96  ANSALQAVNFGIKTANPQ-TIVVDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNNVI 154

Query: 376 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQC 435
           R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K  +DED  F ++A   
Sbjct: 155 RANHVGDWGTQFGMLIAYLE-KMENENASQLELSDLEAFYRAAKAHYDEDAAFAEKARGY 213

Query: 436 VVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLE 492
           VV LQ  D   +  W+ + D++    Q+ YDRLNVTLTE+   GES Y   + ++V  L+
Sbjct: 214 VVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLTEKDVMGESLYNPMLPEIVADLK 273

Query: 493 KKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWI 547
            KGL   DDG  +++    +++   PM ++  K DGGF Y T+D+AA + R E  KAD  
Sbjct: 274 AKGLAVEDDGALVVFLSEFKNKDGDPMGVIVQKKDGGFLYTTTDVAAAKYRYETLKADRA 333

Query: 548 VYVTDLGQGVHFR 560
           +  +D  Q  H +
Sbjct: 334 LVFSDSRQAQHMQ 346



 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 143/354 (40%), Positives = 192/354 (54%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENENASQLEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K  +DED  F ++A   VV LQ  D   +  W+ + D++    Q+ YDRL
Sbjct: 187 SDLEAFYRAAKAHYDEDAAFAEKARGYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   + ++V  L+ K                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPEIVADLKAKGLAVEDDGALVVFLSEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDVAAAKYRYETLKADRALVFSDSRQAQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSGDTVKL +LLDE + R+ D L  + R T LT  E +   +A
Sbjct: 366 HPFFGMMLGKDGKPFKTRSGDTVKLKDLLDEAIERA-DALISQ-RSTNLTEEEKAAVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           VA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI S+   AGI+
Sbjct: 424 VAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSVFAKAGID 477



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/178 (45%), Positives = 109/178 (61%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T LT  E +   +AVA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RSTNLTEEEKAAVVEAVAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+   AGI+      +A S  + L  EKE ALA  LL+  + L  V ++   H LC+YL
Sbjct: 468  RSVFAKAGIDP-----SALSGEIILTEEKERALAIKLLQFEEALNSVAKEGMPHILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++ AFS FY+ C  +  +AE K+K     RL L++ TA+ +K+  D+L I+TV KM
Sbjct: 523  YELAGAFSSFYEACPML--NAEEKVK---NSRLRLSDLTARTLKQGLDLLGIKTVEKM 575



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 37/165 (22%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+  A    G    + A   +    +FGD+Q N AM   K       
Sbjct: 1   MNIQQILSDKIKQAMIAA----GADENAEALVRQSGKPEFGDYQANGAMGAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ I          N +L  + +K+E A PGF+N+FLS        KD + NG
Sbjct: 53  -INPREFAQKILD--------NLNLDGIAEKLEIAGPGFINIFLS--------KDWLANG 95

Query: 129 VQPP---------TLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                        T N +  ++VD+SSPN+A++      HL S I
Sbjct: 96  ANSALQAVNFGIKTANPQ-TIVVDYSSPNVAKE--MHVGHLRSTI 137


>gi|402306058|ref|ZP_10825110.1| arginine--tRNA ligase [Haemophilus sputorum HK 2154]
 gi|400375473|gb|EJP28372.1| arginine--tRNA ligase [Haemophilus sputorum HK 2154]
          Length = 575

 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/372 (38%), Positives = 210/372 (56%), Gaps = 42/372 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+  A    G    + A   +    +FGD+Q N AM   K       
Sbjct: 1   MNIQQILSDKIKQAMIAA----GADENAEALVRQSGKPEFGDYQANGAMGAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP + AQ I          N +L  + +K+E+A PGF+N+FLS        KD + NG
Sbjct: 53  -INPREFAQKILD--------NLNLDGIAEKLEIAGPGFINIFLS--------KDWLANG 95

Query: 325 VQPP--TLNKKLR------VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 376
                  +N  ++      ++VD+SSPN+AKEMHVGHLRSTIIGD + R LE+LG++V+R
Sbjct: 96  ANSALQAVNFGIKTENPQTIVVDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNNVIR 155

Query: 377 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 436
            NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K  +DED  F ++A   V
Sbjct: 156 ANHVGDWGTQFGMLIAYLE-KMENENASQLELSDLEAFYRAAKAHYDEDAAFAEKARGYV 214

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEK 493
           V LQ  D   +  W+ + D++    Q+ YDRLNVTLTE+   GES Y   + ++V  L+ 
Sbjct: 215 VKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLTEKDVMGESLYNPMLPEIVADLKA 274

Query: 494 KGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIV 548
           KGL   DDG  +++    +++   PM ++  K DGGF Y T+D+AA + R E  KAD  +
Sbjct: 275 KGLAVEDDGALVVFLSEFKNKDGDPMGVIVQKKDGGFLYTTTDVAAAKYRYETLKADRAL 334

Query: 549 YVTDLGQGVHFR 560
             +D  Q  H +
Sbjct: 335 VFSDSRQAQHMQ 346



 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 143/354 (40%), Positives = 192/354 (54%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENENASQLEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K  +DED  F ++A   VV LQ  D   +  W+ + D++    Q+ YDRL
Sbjct: 187 SDLEAFYRAAKAHYDEDAAFAEKARGYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   + ++V  L+ K                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPEIVADLKAKGLAVEDDGALVVFLSEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDVAAAKYRYETLKADRALVFSDSRQAQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSGDTVKL +LLDE + R+ D L  + R T LT  E +   +A
Sbjct: 366 HPFFGMMLGKDGKPFKTRSGDTVKLKDLLDEAIERA-DALISQ-RSTNLTEEEKAAVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           VA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI S+   AGI+
Sbjct: 424 VAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSVFAKAGID 477



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/178 (44%), Positives = 108/178 (60%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T LT  E +   +AVA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RSTNLTEEEKAAVVEAVAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+   AGI+   L     S  + L  +KE ALA  LL+  + L  V ++   H LC+YL
Sbjct: 468  RSVFAKAGIDPSTL-----SGEIILTEDKERALAIKLLQFEEALNSVAKEGMPHILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++ AFS FY+ C  +  +AE K+K     RL L++ TA+ +K+  D+L I+TV KM
Sbjct: 523  YELAGAFSSFYEACPML--NAEEKVK---NSRLRLSDLTARTLKQGLDLLGIKTVEKM 575



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 35/164 (21%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+  A    G    + A   +    +FGD+Q N AM   K       
Sbjct: 1   MNIQQILSDKIKQAMIAA----GADENAEALVRQSGKPEFGDYQANGAMGAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP + AQ I          N +L  + +K+E A PGF+N+FLS        KD + NG
Sbjct: 53  -INPREFAQKILD--------NLNLDGIAEKLEIAGPGFINIFLS--------KDWLANG 95

Query: 129 VQPP--TLNKKLR------VLVDFSSPNIARKGGFLYPHLPSQI 164
                  +N  ++      ++VD+SSPN+A++      HL S I
Sbjct: 96  ANSALQAVNFGIKTENPQTIVVDYSSPNVAKE--MHVGHLRSTI 137


>gi|408372706|ref|ZP_11170406.1| arginyl-tRNA ligase [Alcanivorax hongdengensis A-11-3]
 gi|407767681|gb|EKF76118.1| arginyl-tRNA ligase [Alcanivorax hongdengensis A-11-3]
          Length = 583

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/348 (42%), Positives = 189/348 (54%), Gaps = 55/348 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQA 622
           STIIGD + R LE+LGH VVR NHVGDWGTQFGML+A+L ++  +      S  + DL+ 
Sbjct: 139 STIIGDAVVRTLEFLGHQVVRQNHVGDWGTQFGMLLAYLDEQKHEESAAELSRELGDLEG 198

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+ +K+RFDE E F  RA   VV LQ  D D  K W    DVS    Q +YDRL V+LT
Sbjct: 199 FYRAAKQRFDESEDFATRARGLVVKLQAGDADCLKLWREFNDVSLSHCQAVYDRLGVSLT 258

Query: 683 E---RGESFYQKHMEQLVPYLEKKGNLS-------------------------------- 707
               RGES Y   + Q+V  L  KG LS                                
Sbjct: 259 PSDVRGESAYNDDLAQVVADLTAKGLLSEDQGAQCVFMDQFKNKDGDPLPVIVQKADGGY 318

Query: 708 ---------LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFG 752
                    L  + G      ++Y  D  Q +HF+ +   AK AG + P  T +  +GFG
Sbjct: 319 LYATTDLAALRYRAGTLGADRMLYFVDQRQALHFQQMFALAKLAGFV-PEATELAHMGFG 377

Query: 753 VVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGC 812
            + G D + FKTR G TVKL +LLDE  +R+   + +K+   EL   EL    +AV  G 
Sbjct: 378 TMNGPDGRPFKTRDGGTVKLIDLLDEAEQRAYALVSEKS--GELDEDELRSIARAVGIGA 435

Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           +KYADLS NR+ DY+F+FD+ML   GNTA YLLYAYTR+AS+ R AG+
Sbjct: 436 VKYADLSKNRSSDYIFNFDQMLSFEGNTAPYLLYAYTRVASVFRKAGL 483



 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/326 (41%), Positives = 189/326 (57%), Gaps = 23/326 (7%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N A+ L K     G K  P D+A+++ + + ++ A        + K+++A PGF+
Sbjct: 41  GDFATNIALMLAK---PAGMK--PRDLAEALIAALPADSA--------VAKVDIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F +  +   Q+   + +            V+VD+SSPN+AKEMHVGHLRSTIIGD + 
Sbjct: 88  NFFQAEDFLNSQLDAALADAHLAVPRGAPQTVVVDYSSPNLAKEMHVGHLRSTIIGDAVV 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQAFYKESKKRF 422
           R LE+LGH VVR NHVGDWGTQFGML+A+L ++  +      S  + DL+ FY+ +K+RF
Sbjct: 148 RTLEFLGHQVVRQNHVGDWGTQFGMLLAYLDEQKHEESAAELSRELGDLEGFYRAAKQRF 207

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DE E F  RA   VV LQ  D D  K W    DVS    Q +YDRL V+LT    RGES 
Sbjct: 208 DESEDFATRARGLVVKLQAGDADCLKLWREFNDVSLSHCQAVYDRLGVSLTPSDVRGESA 267

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + Q+V  L  KGLL  D G + ++      +D   +P+ + K+DGG+ Y T+DLAA
Sbjct: 268 YNDDLAQVVADLTAKGLLSEDQGAQCVFMDQFKNKDGDPLPVIVQKADGGYLYATTDLAA 327

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFR 560
           +R R     AD ++Y  D  Q +HF+
Sbjct: 328 LRYRAGTLGADRMLYFVDQRQALHFQ 353



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 101/178 (56%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            +  EL   EL    +AV  G +KYADLS NR+ DY+F+FD+ML   GNTA YLLYAYTR+
Sbjct: 415  KSGELDEDELRSIARAVGIGAVKYADLSKNRSSDYIFNFDQMLSFEGNTAPYLLYAYTRV 474

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            AS+ R AG     L + A S    L  + E ALA  L++  +VL  V      H LC YL
Sbjct: 475  ASVFRKAG-----LAMDAVSGDFQLNDDAEQALAARLVQFGEVLQSVADKGQPHLLCAYL 529

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D       +   RL LA  TA+ +K+  ++L +  + +M
Sbjct: 530  YDVAGLFSSFYEHCPILSIDD----PALKQSRLKLAALTARTLKQGMELLGLSPLERM 583



 Score = 41.2 bits (95), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N A+ L K     G K  P D+A+++ + + ++ A        + K++ A PGF+
Sbjct: 41  GDFATNIALMLAK---PAGMK--PRDLAEALIAALPADSA--------VAKVDIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           N F +  +   Q+   + +            V+VD+SSPN+A++
Sbjct: 88  NFFQAEDFLNSQLDAALADAHLAVPRGAPQTVVVDYSSPNLAKE 131


>gi|343503720|ref|ZP_08741528.1| arginyl-tRNA synthetase [Vibrio ichthyoenteri ATCC 700023]
 gi|342814108|gb|EGU49059.1| arginyl-tRNA synthetase [Vibrio ichthyoenteri ATCC 700023]
          Length = 577

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/386 (36%), Positives = 212/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +     T      ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALTDARLGVTAEAAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAAKARAYVVKLQGGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESK 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL    +G ++++      +D  ++ + + K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLQAQGLAVESEGAQVVFLDEYKNKDGEAMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E+  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEQLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/357 (37%), Positives = 191/357 (53%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 SDLEAFYRESKKLYDEDEEFAAKARAYVVKLQGGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+LT     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLTRDDVMGESKYNDMLPKIVADLQAQGLAVESEGAQVVFLDEYKNKDGEAMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEQLGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D + FKTR+G TV+L++LLDE   R+   ++ KN    L   E +     
Sbjct: 367 HHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAEERAAQLIESKN--PTLDAEEKATIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG++ ++
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGVSMDE 481



 Score =  113 bits (283), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++  L   E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPTLDAEEKATIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG++ ++L+       + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVSMDELQ-----GDILITDEKEKALVAKLLQFEEAVQSVAREGQPHIMCA 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL +A  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----AVKQSRLKMAALTAKTIKQGLSLLGIDTLERM 577



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +     T      ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALTDARLGVTAEAAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|417517770|ref|ZP_12180287.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Uganda str. R8-3404]
 gi|353650909|gb|EHC93141.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Uganda str. R8-3404]
          Length = 577

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRMLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRMLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|197334256|ref|YP_002155601.1| arginyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|238690276|sp|B5FC42.1|SYR_VIBFM RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|197315746|gb|ACH65193.1| arginyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 577

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 167/495 (33%), Positives = 250/495 (50%), Gaps = 57/495 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +        ++  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALADKRLGVAKEEQQNIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V R NH+GDWGTQFGMLIA+L+    +    S  ++DL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHNVTRANHIGDWGTQFGMLIANLERIQKEKGEVSMELSDLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F   A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVTARGYVVKLQSGDEFCAEMWKKLVDVTMVQNQRNYDRLNVSLTRDNVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+K+GL    +G ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNSMLAPIVADLQKQGLAVESEGAQVVFLDEYKNKDGEPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELNADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 654
            FGM++      F      +  +ADL           DE E   +RA + +    +  P 
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL----------LDEAE---ERAAKLIEEKNKDLPA 415

Query: 655 YKKA----WEMICDVSRRDFQK------IYDRLNVTLTERGESFYQKHMEQLVPYLEKKG 704
            +KA       +  V   D  K      I+D  N+   E   + Y ++    V  +  K 
Sbjct: 416 EEKAKIATTVAMAAVKYSDLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFSKA 475

Query: 705 NLSLTKKLGIVYVTD 719
            LS+ +  G V +TD
Sbjct: 476 GLSMDELTGEVKITD 490



 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 190/357 (53%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVTRANHIGDWGTQFGMLIANLERIQKEKGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+ESKK +DEDE F   A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 SDLEGFYRESKKLYDEDEEFAVTARGYVVKLQSGDEFCAEMWKKLVDVTMVQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   +  +V  L+K+G                         + + K
Sbjct: 248 NVSLTRDNVMGESMYNSMLAPIVADLQKQGLAVESEGAQVVFLDEYKNKDGEPMGVIVQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELNADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D + FKTR+G TV+L++LLDE   R+   +++KN+  +L   E ++    
Sbjct: 367 HHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAEERAAKLIEEKNK--DLPAEEKAKIATT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KY+DLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI   AG++ ++
Sbjct: 425 VAMAAVKYSDLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFSKAGLSMDE 481



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   +++KN+  +L   E ++    VA   +KY+DLS +R  DY+F +D ML   GNTA
Sbjct: 401  RAAKLIEEKNK--DLPAEEKAKIATTVAMAAVKYSDLSKHRTTDYIFDWDNMLAFEGNTA 458

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI   AG++ ++L     +  V +  EKE AL   L++  + +  V  +
Sbjct: 459  PYMQYAYTRVASIFSKAGLSMDEL-----TGEVKITDEKEKALVAKLMQFEEAVQAVASE 513

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YL++++  FS FY+ C  +  + +     V   RL LA  TAK +K+  ++L
Sbjct: 514  GQPHLMCAYLFELAGQFSSFYEACPILNNEDD----AVKQSRLKLAALTAKTIKQGLELL 569

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 570  GIETLERM 577



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +        ++  ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALADKRLGVAKEEQQNIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|417357488|ref|ZP_12132611.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Give str. S5-487]
 gi|353593922|gb|EHC51568.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Give str. S5-487]
          Length = 562

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 20  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 66

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 67  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 123

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 124 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 182

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 183 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 242

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 243 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 302

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 303 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 351

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 352 --HMFGMMLGKDGKPFKTRAGGTVKLADL 378



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 120 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 178

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 179 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 238

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 239 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 298

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 299 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 357

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 358 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 415

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 416 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 464



 Score =  132 bits (333), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 382  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 439

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 440  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 495

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 496  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 549

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 550  GLDTLGIETVERM 562



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 20  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 66

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 67  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 112


>gi|238788535|ref|ZP_04632328.1| Arginyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238723448|gb|EEQ15095.1| Arginyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 576

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 234/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L  +  K+E+A PGF+N+FL R +   +++  +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLDGIASKVEIAGPGFINIFLDRQWVASKVEHALTAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V+P T      ++VD+S+PN+AK+MHVGHLRSTIIGD   R LE+LGH+V+R N
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFAQRARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRQMWRKLVDITMAQNQIAYDRLNVTLTKDDVMGESLYNAMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    DG  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESDGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  
Sbjct: 334 LYYIDTRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTVKLSDLLDEAIER 400



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 191/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F +RA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFAQRARAYVVKLQGGDEYCRQMWRKLVDITMAQNQIAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNAMLPGIVADLKAKGLAVESDGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDTRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +  +A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAIERAGKLIAEKN--PDMPADELKQVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ SI + AGI+      
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSIFKRAGIDENSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 107/178 (60%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +  +AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVVEAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI + AGI+   L     + P+ +  ++E ALA  LL+  +V+  V R+   H +C YL
Sbjct: 468  VSIFKRAGIDENSL-----TLPLVITEDREAALATRLLQFEEVITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  ++E   ++    RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNAESEESRQS----RLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++         L  +  K+E A PGF+N+FL R +   +++  +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLDGIASKVEIAGPGFINIFLDRQWVASKVEHALTAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              V  V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQ 127


>gi|333894009|ref|YP_004467884.1| arginyl-tRNA synthetase [Alteromonas sp. SN2]
 gi|332994027|gb|AEF04082.1| arginyl-tRNA synthetase [Alteromonas sp. SN2]
          Length = 576

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/339 (41%), Positives = 202/339 (59%), Gaps = 33/339 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FG++Q N AMAL K  + K     P DIA+ I  +V         L  V  K+EVA PG
Sbjct: 34  EFGEYQFNGAMALAKQLRQK-----PRDIAEKIVEIV--------KLDDVASKLEVAGPG 80

Query: 303 FVNVFLSRVYAGEQ----IKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           F+NV L+  +   Q    + D  +   + P    +  V+VD+SSPN+AKEMHVGHLR+TI
Sbjct: 81  FINVHLNNEWLANQCELALHDPRIGVAKSP----EQTVVVDYSSPNLAKEMHVGHLRTTI 136

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD + ++LE+LGH V+R NH+GDWGTQFGML+AHL DK    + ++  ++DL+ FY+E+
Sbjct: 137 IGDAVVKVLEFLGHKVIRQNHMGDWGTQFGMLLAHLSDKLEQEVAET-ALSDLEDFYREA 195

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---R 475
           K RFD++E F  RA + VV LQ  D      WE   DVS    + +Y +LNV+LT     
Sbjct: 196 KVRFDDEEGFADRAREYVVKLQGGDEKCLSLWEKFIDVSIAHSEDVYKKLNVSLTRADIM 255

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTS 530
           GES Y   +  ++  L++KG+   D G ++++     +  G+  + IV KS GG+ Y T+
Sbjct: 256 GESAYNHDLANVISELKEKGIAVEDQGAQVVFIPELADKEGNPAVYIVQKSGGGYLYATT 315

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIG 569
           DLAA+R R     AD  + +TD  Q +HF+   ++ I+G
Sbjct: 316 DLAAMRYRSGTLNADRTLILTDARQALHFK---QTEIVG 351



 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 137/352 (38%), Positives = 193/352 (54%), Gaps = 54/352 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +TIIGD + ++LE+LGH V+R NH+GDWGTQFGML+AHL DK    + ++  ++DL+ FY
Sbjct: 134 TTIIGDAVVKVLEFLGHKVIRQNHMGDWGTQFGMLLAHLSDKLEQEVAET-ALSDLEDFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K RFD++E F  RA + VV LQ  D      WE   DVS    + +Y +LNV+LT  
Sbjct: 193 REAKVRFDDEEGFADRAREYVVKLQGGDEKCLSLWEKFIDVSIAHSEDVYKKLNVSLTRA 252

Query: 684 --RGESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLGIVY-- 716
              GES Y   +  ++  L++KG                        + + +K G  Y  
Sbjct: 253 DIMGESAYNHDLANVISELKEKGIAVEDQGAQVVFIPELADKEGNPAVYIVQKSGGGYLY 312

Query: 717 ----------------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                                 +TD  Q +HF+  E   +KAG +   +T  +   FG++
Sbjct: 313 ATTDLAAMRYRSGTLNADRTLILTDARQALHFKQTEIVGRKAGFMEEAQT-YEHCPFGMM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D K FKTR+G TVKL ELLDE + R+   + +  R  +L+  EL+E  + V  G +K
Sbjct: 372 LGSDGKPFKTRTGGTVKLVELLDEAVERAGKLIAE--RDNDLSADELAEVARKVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
           YADLS NR  DY+F++D ML   GNTA YL YAYTR+ S+ R AG+  E  P
Sbjct: 430 YADLSKNRTTDYMFNWDTMLSFEGNTAPYLQYAYTRVKSLFRKAGVAIETMP 481



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 107/178 (60%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R  +L+  EL+E  + V  G +KYADLS NR  DY+F++D ML   GNTA YL YAYTR+
Sbjct: 407  RDNDLSADELAEVARKVGIGAVKYADLSKNRTTDYMFNWDTMLSFEGNTAPYLQYAYTRV 466

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG+  E + V      +++  ++E AL+  LL+  +V+ LV+RD   H LC YL
Sbjct: 467  KSLFRKAGVAIETMPV-----DINIVEKQEHALSVLLLQFEEVVGLVSRDATPHVLCTYL 521

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y++++AF  FY+ C  ++   E K++     RL L+   A  + +  ++L I T+ KM
Sbjct: 522  YELASAFMSFYEACPMLKDGIELKVR---DSRLALSALVASTLSQGLNLLGIETLEKM 576



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 21/110 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FG++Q N AMAL K  + K     P DIA+ I  +V         L  V  K+E A PG
Sbjct: 34  EFGEYQFNGAMALAKQLRQK-----PRDIAEKIVEIV--------KLDDVASKLEVAGPG 80

Query: 107 FVNVFLSRVYAGEQ----MKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+NV L+  +   Q    + D  +   + P    +  V+VD+SSPN+A++
Sbjct: 81  FINVHLNNEWLANQCELALHDPRIGVAKSP----EQTVVVDYSSPNLAKE 126


>gi|417325718|ref|ZP_12111608.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Adelaide str. A4-669]
 gi|353575227|gb|EHC38022.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Adelaide str. A4-669]
          Length = 567

 Score =  237 bits (605), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 25  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 71

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 72  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 128

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 129 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 187

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 188 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 247

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 248 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 307

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 308 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 356

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 357 --HMFGMMLGKDGKPFKTRAGGTVKLADL 383



 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 125 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 183

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 184 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 243

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 244 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 303

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 304 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 362

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 363 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 420

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 421 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 469



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 387  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 444

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 445  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 500

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + +     V   RL LA+ TAK +K   
Sbjct: 501  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA----VRNSRLKLAQLTAKTLKLGL 556

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 557  DTLGIETVERM 567



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 25  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 71

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 72  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 117


>gi|417341144|ref|ZP_12122294.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Baildon str. R6-199]
 gi|357958252|gb|EHJ82944.1| Arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Baildon str. R6-199]
          Length = 567

 Score =  237 bits (605), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 25  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 71

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 72  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 128

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 129 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 187

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 188 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 247

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 248 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 307

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 308 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 356

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 357 --HMFGMMLGKDGKPFKTRAGGTVKLADL 383



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 125 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 183

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 184 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 243

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 244 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 303

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 304 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 362

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 363 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 420

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 421 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 469



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 387  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 444

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 445  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 500

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + +     V   RL LA+ TAK +K   
Sbjct: 501  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA----VRNSRLKLAQLTAKTLKLGL 556

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 557  DTLGIETVERM 567



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 25  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 71

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 72  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 117


>gi|50121444|ref|YP_050611.1| arginyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|81644856|sp|Q6D474.1|SYR_ERWCT RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|49611970|emb|CAG75419.1| arginyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 576

 Score =  237 bits (605), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 226/414 (54%), Gaps = 57/414 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++        +L  + +K E+A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V+P T      +++D+S+PN+AKEMHVGHLRSTIIGD  +R LE+LGH+++R N
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKEMHVGHLRSTIIGDAAARTLEFLGHNIIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNESANEMDLSDLEAFYREAKKHYDEDADFAERARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  Y+RLNVTLT++   GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRQMWRKLVDITMTQNQINYERLNVTLTKQDVMGESLYNSMLPNIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLNADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +Y  D  Q  H  L++  TI+     R   Y+  D V L H       FGM++ 
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVSLEH-----HMFGMMLG 374



 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/361 (39%), Positives = 195/361 (54%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R LE+LGH+++R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTLEFLGHNIIRANHVGDWGTQFGMLIAYLE-KMQNESANEMDL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+E+KK +DED  F +RA   VV LQ  D   ++ W  + D++    Q  Y+RL
Sbjct: 187 SDLEAFYREAKKHYDEDADFAERARGYVVKLQGGDEYCRQMWRKLVDITMTQNQINYERL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT++   GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTKQDVMGESLYNSMLPNIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLNADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KLSELLDE   R+L  + +KN   E    EL+   + 
Sbjct: 366 HHMFGMMLGKDGKPFKTRAGGTIKLSELLDEAYGRALKLIAEKNPQME--SDELAALAKV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V+ G IKYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI + AGI  +   +
Sbjct: 424 VSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGIQEDTLTQ 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 112/193 (58%), Gaps = 13/193 (6%)

Query: 927  GYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
             YG  R+L  + +KN   E    EL+   + V+ G IKYADLS +R  DYVF +D ML  
Sbjct: 397  AYG--RALKLIAEKNPQME--SDELAALAKVVSIGAIKYADLSKSRTTDYVFDWDNMLAF 452

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
             GNTA Y+ YAYTR+ASI + AGI  + L     + P++L  E+EFALA  LL+  + + 
Sbjct: 453  EGNTAPYMQYAYTRVASIFKRAGIQEDTL-----TQPITLNDEREFALATRLLQFEETIT 507

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             V R+   H +C YLYD++  FS FY++C  +  + +     V   RL LA  TAK +K+
Sbjct: 508  SVAREGTPHVMCSYLYDLAGLFSGFYEHCPILNAEND----DVRQSRLRLALLTAKTLKQ 563

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV KM
Sbjct: 564  GLDTLGIETVDKM 576



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++        +L  + +K E A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V+P T      +++D+S+PN+A++
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKE 127


>gi|417364712|ref|ZP_12137565.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hvittingfoss str. A4-620]
 gi|353596406|gb|EHC53405.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hvittingfoss str. A4-620]
          Length = 563

 Score =  237 bits (605), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 21  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 67

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 68  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 124

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 125 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQREN-AGDMALADLEGFYRDAK 183

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 184 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 243

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 244 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 303

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 304 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 352

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 353 --HMFGMMLGKDGKPFKTRAGGTVKLADL 379



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 121 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQREN-AGDMALADLEGFY 179

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 180 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 239

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 240 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 299

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 300 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 358

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 359 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 416

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 417 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 465



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 383  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 440

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 441  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 496

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      +   RL LA+ TAK +K 
Sbjct: 497  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------IRNSRLKLAQLTAKTLKL 550

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 551  GLDTLGIETVERM 563



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 21  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 67

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 68  FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 113


>gi|437769574|ref|ZP_20835435.1| arginyl-tRNA ligase, partial [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 76-2651]
 gi|435306584|gb|ELO81865.1| arginyl-tRNA ligase, partial [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 76-2651]
          Length = 468

 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 21  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 67

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 68  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 124

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 125 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 183

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 184 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 243

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 244 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 303

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 304 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 352

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 353 --HMFGMMLGKDGKPFKTRAGGTVKLADL 379



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 121 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 179

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 180 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 239

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 240 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 299

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 300 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 358

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 359 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 416

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 417 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 465



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 383  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 440

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDL 1015
            NTA Y+ YAYTR+ S+ R A I+ + L
Sbjct: 441  NTAPYMQYAYTRVLSVFRKADIDEQAL 467



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 21  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 67

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 68  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKE 113


>gi|163750994|ref|ZP_02158226.1| arginyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161329284|gb|EDQ00282.1| arginyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 581

 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 139/349 (39%), Positives = 205/349 (58%), Gaps = 28/349 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L KI      +KNP +IAQ    ++   L  +  +AKV    E+A PGF+
Sbjct: 41  GDFATNLAMMLTKI-----ARKNPREIAQ----LIIDSLPQDSQVAKV----EIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F+       Q+   + +      L ++  ++VD+SSPN+AKEMHVGHLRSTIIGD++ 
Sbjct: 88  NFFIDEDALANQLMAALKDDHLGICLPEQQTIVVDYSSPNLAKEMHVGHLRSTIIGDSVV 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKKRFD 423
           R LE+ GH V+R NHVGDWGTQFGML+A++++ +  +       +ADL+ FY+ +K RFD
Sbjct: 148 RALEFQGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEQAQMDLADLETFYRAAKVRFD 207

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFY 480
           E E F  RA + VV+LQ  D    K W    D+S      +Y RL V+LT    RGES Y
Sbjct: 208 ESEDFAVRARKLVVSLQSGDEYCNKLWREFNDISLNHCHDVYARLGVSLTREDVRGESAY 267

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAI 535
              + ++V  L+ +GLL   +G K+++      ++   +P+ I K+DGG+ Y TSD+AA+
Sbjct: 268 NADLAEVVKELKAQGLLSESNGAKVVFQDEFKNKEGDPLPVIIQKADGGYLYATSDMAAM 327

Query: 536 RQRIEEEKADWIVYVTDLGQGVH----FRLLEESTIIGDTISRLLEYLG 580
           R R +   AD ++Y  DL Q +H    F+L  ++  +   +S  LE++G
Sbjct: 328 RYRSKVLNADRVLYFVDLRQALHFQQVFKLARKANFVRPELS--LEHMG 374



 Score =  216 bits (550), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 185/345 (53%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE+ GH V+R NHVGDWGTQFGML+A++++ +  +       +ADL+ F
Sbjct: 139 STIIGDSVVRALEFQGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEQAQMDLADLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE E F  RA + VV+LQ  D    K W    D+S      +Y RL V+LT 
Sbjct: 199 YRAAKVRFDESEDFAVRARKLVVSLQSGDEYCNKLWREFNDISLNHCHDVYARLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV------------------------- 715
              RGES Y   + ++V  L+ +G LS +    +V                         
Sbjct: 259 EDVRGESAYNADLAEVVKELKAQGLLSESNGAKVVFQDEFKNKEGDPLPVIIQKADGGYL 318

Query: 716 ----------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                 Y  DL Q +HF+ + + A+KA  + P +  ++ +GFG 
Sbjct: 319 YATSDMAAMRYRSKVLNADRVLYFVDLRQALHFQQVFKLARKANFVRP-ELSLEHMGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + G D + FKTRSG  VKL +LL+E   R+L+ ++ KN   ++   EL +  + V    +
Sbjct: 378 MNGADGRPFKTRSGGVVKLVDLLNEADTRALELVRSKN--PDMDEAELEKIAKVVGISSV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+  I + A
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVTGIFKRA 480



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 109/189 (57%), Gaps = 14/189 (7%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++   EL +  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEAELEKIAKVVGISSVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASI-ARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
             YLLYAYTR+  I  R   I+  D ++        LEH+KE  L   L +  +VL  +  
Sbjct: 464  PYLLYAYTRVTGIFKRAKDIDLSDAKIV-------LEHDKEKNLGNKLAQFAEVLSRMVA 516

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H +C YL++++ AFS FY+ C  +  + E + K+    RLL+A+ TAK +K+  D+
Sbjct: 517  KGQPHAMCAYLFELAGAFSSFYEACPVLAAETEAQKKS----RLLIAQLTAKTLKQGLDL 572

Query: 1111 LNIRTVHKM 1119
            L I T+ +M
Sbjct: 573  LGIETLDRM 581



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 13/104 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L KI      +KNP +IAQ    ++   L  +  +AKV    E A PGF+
Sbjct: 41  GDFATNLAMMLTKI-----ARKNPREIAQ----LIIDSLPQDSQVAKV----EIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           N F+       Q+   + +      L ++  ++VD+SSPN+A++
Sbjct: 88  NFFIDEDALANQLMAALKDDHLGICLPEQQTIVVDYSSPNLAKE 131


>gi|343514137|ref|ZP_08751219.1| arginyl-tRNA synthetase [Vibrio sp. N418]
 gi|342800803|gb|EGU36314.1| arginyl-tRNA synthetase [Vibrio sp. N418]
          Length = 577

 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +     T  +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALNDARLGVTAEEAKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAAKARAYVVKLQGGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESK 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL    +G ++++      +D  ++ + + K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLQAQGLAVESEGAQVVFLDEYKNKDGEAMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E+  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEQLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 192/357 (53%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 SDLEAFYRESKKLYDEDEEFAAKARAYVVKLQGGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+LT     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLTRDDVMGESKYNDMLPKIVADLQAQGLAVESEGAQVVFLDEYKNKDGEAMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEQLGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D + FKTR+G TV+L++LLDE   R+   ++ KN    LT  E +     
Sbjct: 367 HHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAEERAAQLIESKN--PTLTAEEKATIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG++ ++
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGVSMDE 481



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 102/181 (56%), Gaps = 11/181 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++  LT  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPTLTAEEKATIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG++ ++L+       + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVSMDELQ-----GDIVITDEKEKALVAKLLQFEEAVQSVAREGQPHIMCA 521

Query: 1060 YLYDISTAFSEFYDNC-YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHK 1118
            YL++++  FS FY+ C   + +DA      V   RL +A  TAK +K+   +L I T+ +
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDA-----AVKQSRLKMAALTAKTIKQGLSLLGIDTLER 576

Query: 1119 M 1119
            M
Sbjct: 577  M 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +     T  +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALNDARLGVTAEEAKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|416050685|ref|ZP_11577061.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype e str. SC1083]
 gi|347993875|gb|EGY35204.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype e str. SC1083]
          Length = 577

 Score =  237 bits (604), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 153/402 (38%), Positives = 221/402 (54%), Gaps = 46/402 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E+A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----VNPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLN----KKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N+FL   +  E I     N V+ P L      K  V+VD+SSPN+AKEMHVGHLRSTI
Sbjct: 82  FINIFLKDGWLAENIG----NAVKDPKLGIHHQDKQTVVVDYSSPNVAKEMHVGHLRSTI 137

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       + DL+AFY+ +
Sbjct: 138 IGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELCDLEAFYRAA 196

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER--- 475
           KK +DED IF ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLTE+   
Sbjct: 197 KKHYDEDPIFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEKDVM 256

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTS 530
           GES Y   +  +V  L+K+GL   DDG  +++      +D G + + + K DGGF Y T+
Sbjct: 257 GESLYNPMLPGIVEDLKKQGLAVKDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLYTTT 316

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVG 590
           D+AA + R E  KA+  +  +D  Q  H   ++++ +    I+R   Y+  D  +L H  
Sbjct: 317 DIAAAKYRYETLKANRALVFSDTRQSQH---MQQAWL----ITRKAGYV-PDSFQLEH-- 366

Query: 591 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 632
                FGM++   +D  P + T+S     L     E+ +R D
Sbjct: 367 ---KNFGMMLG--KDGKP-FKTRSGDTVKLADLLDEAIERAD 402



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 139/347 (40%), Positives = 190/347 (54%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       + DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELCDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED IF ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLTE+
Sbjct: 194 RAAKKHYDEDPIFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPGIVEDLKKQGLAVKDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  +++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLEHKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSGDTVKL++LLDE + R+ D L  + + T L+  E ++  +AV  G +K
Sbjct: 373 LGKDGKPFKTRSGDTVKLADLLDEAIERA-DVLISQ-KSTALSEQEKADVIEAVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + IN
Sbjct: 431 YADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSQIN 477



 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSEQEKADVIEAVGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + IN  ++  A    P++L  EKE  LA  LL+  + + LV +D   H LC YL
Sbjct: 468  RSIFNRSQINPGEVEQA----PLTLTDEKERVLAIKLLQFEEAIQLVAKDGVPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + +     V   RL LA  T + +K+  D+L I+TV KM
Sbjct: 524  YELAGVFSSFYEHCPILNSEDQ----QVKLSRLKLALLTERTLKQGLDLLGIKTVEKM 577



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 21/110 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----VNPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLN----KKLRVLVDFSSPNIARK 152
           F+N+FL   +  E     I N V+ P L      K  V+VD+SSPN+A++
Sbjct: 82  FINIFLKDGWLAEN----IGNAVKDPKLGIHHQDKQTVVVDYSSPNVAKE 127


>gi|59711446|ref|YP_204222.1| arginyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|75354336|sp|Q5E6L2.1|SYR_VIBF1 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|59479547|gb|AAW85334.1| arginyl-tRNA synthetase [Vibrio fischeri ES114]
          Length = 577

 Score =  237 bits (604), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 165/493 (33%), Positives = 250/493 (50%), Gaps = 53/493 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +        ++  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALADERLGVAKEEQQNIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V R NH+GDWGTQFGMLIA+L+    +    S  ++DL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHNVTRANHIGDWGTQFGMLIANLERIQKEKGEVSMELSDLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F   A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVTARGYVVKLQSGDEFCAEMWKKLVDVTMVQNQRNYDRLNVSLTRDNVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+K+GL    +G ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNSMLAPIVADLQKQGLAVESEGAQVVFLDEYKNKDGEPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELNADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDED-------EIFKKRAYQCVVA 647
            FGM++      F      +  +ADL    +E   +  E+       E   K A    +A
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADLLDEAEERATKLIEEKNKDLSAEEKAKIATTVAMA 428

Query: 648 LQRFDPDYKKAWEMICDVSR-RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNL 706
             ++            D+S+ R    I+D  N+   E   + Y ++    V  +  K  L
Sbjct: 429 AVKY-----------SDLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFSKAGL 477

Query: 707 SLTKKLGIVYVTD 719
           S+ +  G V +TD
Sbjct: 478 SMDELTGEVKITD 490



 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 191/357 (53%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVTRANHIGDWGTQFGMLIANLERIQKEKGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+ESKK +DEDE F   A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 SDLEGFYRESKKLYDEDEEFAVTARGYVVKLQSGDEFCAEMWKKLVDVTMVQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   +  +V  L+K+G                         + + K
Sbjct: 248 NVSLTRDNVMGESMYNSMLAPIVADLQKQGLAVESEGAQVVFLDEYKNKDGEPMGVIVQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELNADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D + FKTR+G TV+L++LLDE   R+   +++KN+  +L+  E ++    
Sbjct: 367 HHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAEERATKLIEEKNK--DLSAEEKAKIATT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KY+DLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI   AG++ ++
Sbjct: 425 VAMAAVKYSDLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFSKAGLSMDE 481



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 107/188 (56%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   +++KN+  +L+  E ++    VA   +KY+DLS +R  DY+F +D ML   GNTA
Sbjct: 401  RATKLIEEKNK--DLSAEEKAKIATTVAMAAVKYSDLSKHRTTDYIFDWDNMLAFEGNTA 458

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI   AG++ ++L     +  V +  EKE AL   L++  + +  V  +
Sbjct: 459  PYMQYAYTRVASIFSKAGLSMDEL-----TGEVKITDEKEKALVAKLMQFEEAVQAVASE 513

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YL++++  FS FY+ C  +  + +     V   RL LA  TAK +K+  ++L
Sbjct: 514  GQPHLMCAYLFELAGQFSSFYEACPILNNEDDA----VKQSRLKLAALTAKTIKQGLELL 569

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 570  GIETLERM 577



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +        ++  ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALADERLGVAKEEQQNIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|343513291|ref|ZP_08750400.1| arginyl-tRNA synthetase [Vibrio scophthalmi LMG 19158]
 gi|342793596|gb|EGU29388.1| arginyl-tRNA synthetase [Vibrio scophthalmi LMG 19158]
          Length = 577

 Score =  237 bits (604), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +     T  +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALNDARLGVTAEEAKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAAKARAYVVKLQGGDEFCAEMWKKLVDVTMIQNQRNYDRLNVSLTRDDVMGESK 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   + ++V  L+ +GL    +G ++++      +D  ++ + + K DGGF Y T+D+A 
Sbjct: 262 YNDMLPKIVADLQAQGLAVESEGAQVVFLDEYKNKDGEAMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E+  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEQLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  215 bits (548), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 135/357 (37%), Positives = 191/357 (53%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQQESGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 SDLEAFYRESKKLYDEDEEFAAKARAYVVKLQGGDEFCAEMWKKLVDVTMIQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------------ 704
           NV+LT     GES Y   + ++V  L+ +G                              
Sbjct: 248 NVSLTRDDVMGESKYNDMLPKIVADLQAQGLAVESEGAQVVFLDEYKNKDGEAMGVIVQK 307

Query: 705 ----------NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                     +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEQLGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D + FKTR+G TV+L++LLDE   R+   ++ KN    L   E +     
Sbjct: 367 HHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAEERAAQLIESKN--PTLAAEEKATIANT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AG++ ++
Sbjct: 425 VAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAGVSMDE 481



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 101/181 (55%), Gaps = 11/181 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++  L   E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPTLAAEEKATIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AG++ ++L+       + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGVSMDELQ-----GDIIITDEKEKALVAKLLQFEEAVQSVAREGQPHIMCA 521

Query: 1060 YLYDISTAFSEFYDNC-YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHK 1118
            YL++++  FS FY+ C   + +DA      V   RL +A  TAK +K+   +L I T+ +
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDA-----AVKQSRLKMAALTAKTIKQGLSLLGIDTLER 576

Query: 1119 M 1119
            M
Sbjct: 577  M 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +     T  +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALNDARLGVTAEEAKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|421845875|ref|ZP_16279027.1| arginyl-tRNA ligase [Citrobacter freundii ATCC 8090 = MTCC 1658]
 gi|411773016|gb|EKS56599.1| arginyl-tRNA ligase [Citrobacter freundii ATCC 8090 = MTCC 1658]
          Length = 577

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 151/392 (38%), Positives = 213/392 (54%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL  V+  + ++  + +   GV  PT   K  V+VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPVFLAQHVQQALASDRLGVTQPT---KQTVVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 186/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADID 477



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L     +  V +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDESAL----ANAQVIINEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     +   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENE----EIRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL  V+  + ++  + +   GV  PT   K  V+VD+S+PN+A++
Sbjct: 82  FINIFLDPVFLAQHVQQALASDRLGVTQPT---KQTVVVDYSAPNVAKE 127


>gi|332161947|ref|YP_004298524.1| arginyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666177|gb|ADZ42821.1| arginyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 576

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 157/440 (35%), Positives = 235/440 (53%), Gaps = 54/440 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S     +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEPQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ +  ++         L  +  K+E+A PGF+N+FL R +   ++++ +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLDGIARKVEIAGPGFINIFLDRQWVASKVEEALKAP 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GVQP    +   ++VD+S+PN+AK+MHVGHLRSTIIGD   R LE+LGH+V+R NHVG
Sbjct: 104 KLGVQPV---EPQTIVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F KRA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFAKRARAYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   + ++V  L+ KGL  
Sbjct: 220 GDEYCRQMWRKLVDITMAQNQISYDRLNVTLTKDDVMGESLYNTMLPEIVADLKAKGLAV 279

Query: 499 LDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
             +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD ++Y 
Sbjct: 280 ESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  P +
Sbjct: 337 IDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGKP-F 380

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E+ +R
Sbjct: 381 KTRSGGTVKLSDLLDEAIER 400



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/357 (38%), Positives = 192/357 (53%), Gaps = 58/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F KRA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFAKRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQISYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNTMLPEIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +  +A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAIERAGKLIAEKN--PDMPADELKQVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ + AG++  +
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFKRAGVDESN 480



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 108/178 (60%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +  +AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVVEAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ + AG++  +L +     P+ +  ++E ALA  LL+  +V+  V R+   H +C YL
Sbjct: 468  VSVFKRAGVDESNLIL-----PLVITEDREAALATRLLQFEEVITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D+E   ++    RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNADSEESRQS----RLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S     +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEPQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ +  ++         L  +  K+E A PGF+N+FL R +   ++++ +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLDGIARKVEIAGPGFINIFLDRQWVASKVEEALKAP 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             GVQP    +   ++VD+S+PN+A++
Sbjct: 104 KLGVQPV---EPQTIVVDYSAPNVAKQ 127


>gi|147673730|ref|YP_001217600.1| arginyl-tRNA synthetase [Vibrio cholerae O395]
 gi|227118521|ref|YP_002820417.1| arginyl-tRNA synthetase [Vibrio cholerae O395]
 gi|146315613|gb|ABQ20152.1| arginyl-tRNA synthetase [Vibrio cholerae O395]
 gi|227013971|gb|ACP10181.1| arginyl-tRNA synthetase [Vibrio cholerae O395]
          Length = 599

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 103

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQEAPKNIVADYSAPNVAKEMHVGHLRSTIIGDA 163

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 164 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 223

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 224 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 283

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 284 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 343

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 344 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 391

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 392 -FGMMLGKDGRPFKTRAGGTVRLADL 416



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 157 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 216

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 217 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 276

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 277 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 336

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 337 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 395

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 396 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKANIANTVAMAAVK 453

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 454 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 500



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 429  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 488

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 489  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 543

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 544  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 599



 Score = 45.1 bits (105), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 103

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQEAPKNIVADYSAPNVAKE 149


>gi|379741897|ref|YP_005333866.1| arginyl-tRNA synthetase [Vibrio cholerae IEC224]
 gi|417814112|ref|ZP_12460765.1| arginyl-tRNA synthetase [Vibrio cholerae HC-49A2]
 gi|417817850|ref|ZP_12464479.1| arginyl-tRNA synthetase [Vibrio cholerae HCUF01]
 gi|418335092|ref|ZP_12944005.1| arginyl-tRNA synthetase [Vibrio cholerae HC-06A1]
 gi|418338704|ref|ZP_12947598.1| arginyl-tRNA synthetase [Vibrio cholerae HC-23A1]
 gi|418346627|ref|ZP_12951387.1| arginyl-tRNA synthetase [Vibrio cholerae HC-28A1]
 gi|418350386|ref|ZP_12955117.1| arginyl-tRNA synthetase [Vibrio cholerae HC-43A1]
 gi|418356154|ref|ZP_12958873.1| arginyl-tRNA synthetase [Vibrio cholerae HC-61A1]
 gi|419827045|ref|ZP_14350544.1| arginine--tRNA ligase [Vibrio cholerae CP1033(6)]
 gi|421317890|ref|ZP_15768458.1| arginyl-tRNA synthetase [Vibrio cholerae CP1032(5)]
 gi|421321840|ref|ZP_15772393.1| arginyl-tRNA synthetase [Vibrio cholerae CP1038(11)]
 gi|421325642|ref|ZP_15776166.1| arginyl-tRNA synthetase [Vibrio cholerae CP1041(14)]
 gi|421329302|ref|ZP_15779812.1| arginyl-tRNA synthetase [Vibrio cholerae CP1042(15)]
 gi|421333209|ref|ZP_15783686.1| arginyl-tRNA synthetase [Vibrio cholerae CP1046(19)]
 gi|421336799|ref|ZP_15787260.1| arginyl-tRNA synthetase [Vibrio cholerae CP1048(21)]
 gi|421340226|ref|ZP_15790658.1| arginyl-tRNA synthetase [Vibrio cholerae HC-20A2]
 gi|421347959|ref|ZP_15798336.1| arginyl-tRNA synthetase [Vibrio cholerae HC-46A1]
 gi|422897181|ref|ZP_16934628.1| arginyl-tRNA synthetase [Vibrio cholerae HC-40A1]
 gi|422903377|ref|ZP_16938351.1| arginyl-tRNA synthetase [Vibrio cholerae HC-48A1]
 gi|422907260|ref|ZP_16942063.1| arginyl-tRNA synthetase [Vibrio cholerae HC-70A1]
 gi|422914109|ref|ZP_16948615.1| arginyl-tRNA synthetase [Vibrio cholerae HFU-02]
 gi|422926313|ref|ZP_16959327.1| arginyl-tRNA synthetase [Vibrio cholerae HC-38A1]
 gi|423145637|ref|ZP_17133231.1| arginyl-tRNA synthetase [Vibrio cholerae HC-19A1]
 gi|423150312|ref|ZP_17137626.1| arginyl-tRNA synthetase [Vibrio cholerae HC-21A1]
 gi|423154130|ref|ZP_17141311.1| arginyl-tRNA synthetase [Vibrio cholerae HC-22A1]
 gi|423157214|ref|ZP_17144307.1| arginyl-tRNA synthetase [Vibrio cholerae HC-32A1]
 gi|423160784|ref|ZP_17147724.1| arginyl-tRNA synthetase [Vibrio cholerae HC-33A2]
 gi|423165609|ref|ZP_17152335.1| arginyl-tRNA synthetase [Vibrio cholerae HC-48B2]
 gi|423731624|ref|ZP_17704927.1| arginine--tRNA ligase [Vibrio cholerae HC-17A1]
 gi|423768908|ref|ZP_17713054.1| arginine--tRNA ligase [Vibrio cholerae HC-50A2]
 gi|423895511|ref|ZP_17727258.1| arginine--tRNA ligase [Vibrio cholerae HC-62A1]
 gi|423930948|ref|ZP_17731651.1| arginine--tRNA ligase [Vibrio cholerae HC-77A1]
 gi|424003063|ref|ZP_17746138.1| arginine--tRNA ligase [Vibrio cholerae HC-17A2]
 gi|424006852|ref|ZP_17749822.1| arginine--tRNA ligase [Vibrio cholerae HC-37A1]
 gi|424024835|ref|ZP_17764486.1| arginine--tRNA ligase [Vibrio cholerae HC-62B1]
 gi|424027719|ref|ZP_17767322.1| arginine--tRNA ligase [Vibrio cholerae HC-69A1]
 gi|424586996|ref|ZP_18026575.1| arginyl-tRNA synthetase [Vibrio cholerae CP1030(3)]
 gi|424595645|ref|ZP_18034965.1| arginyl-tRNA synthetase [Vibrio cholerae CP1040(13)]
 gi|424599563|ref|ZP_18038742.1| arginyl-tRNA synthetase [Vibrio Cholerae CP1044(17)]
 gi|424602283|ref|ZP_18041424.1| arginyl-tRNA synthetase [Vibrio cholerae CP1047(20)]
 gi|424607255|ref|ZP_18046197.1| arginyl-tRNA synthetase [Vibrio cholerae CP1050(23)]
 gi|424611077|ref|ZP_18049916.1| arginyl-tRNA synthetase [Vibrio cholerae HC-39A1]
 gi|424613888|ref|ZP_18052676.1| arginyl-tRNA synthetase [Vibrio cholerae HC-41A1]
 gi|424617864|ref|ZP_18056536.1| arginyl-tRNA synthetase [Vibrio cholerae HC-42A1]
 gi|424622648|ref|ZP_18061153.1| arginyl-tRNA synthetase [Vibrio cholerae HC-47A1]
 gi|424645612|ref|ZP_18083348.1| arginyl-tRNA synthetase [Vibrio cholerae HC-56A2]
 gi|424653379|ref|ZP_18090759.1| arginyl-tRNA synthetase [Vibrio cholerae HC-57A2]
 gi|424657201|ref|ZP_18094486.1| arginyl-tRNA synthetase [Vibrio cholerae HC-81A2]
 gi|443504431|ref|ZP_21071389.1| arginyl-tRNA synthetase [Vibrio cholerae HC-64A1]
 gi|443508332|ref|ZP_21075094.1| arginyl-tRNA synthetase [Vibrio cholerae HC-65A1]
 gi|443512176|ref|ZP_21078813.1| arginyl-tRNA synthetase [Vibrio cholerae HC-67A1]
 gi|443515729|ref|ZP_21082240.1| arginyl-tRNA synthetase [Vibrio cholerae HC-68A1]
 gi|443519522|ref|ZP_21085918.1| arginyl-tRNA synthetase [Vibrio cholerae HC-71A1]
 gi|443524413|ref|ZP_21090626.1| arginyl-tRNA synthetase [Vibrio cholerae HC-72A2]
 gi|443532009|ref|ZP_21098023.1| arginyl-tRNA synthetase [Vibrio cholerae HC-7A1]
 gi|443535812|ref|ZP_21101688.1| arginyl-tRNA synthetase [Vibrio cholerae HC-80A1]
 gi|443539352|ref|ZP_21105206.1| arginyl-tRNA synthetase [Vibrio cholerae HC-81A1]
 gi|31077163|sp|Q9KQC6.3|SYR_VIBCH RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|340036598|gb|EGQ97574.1| arginyl-tRNA synthetase [Vibrio cholerae HC-49A2]
 gi|340037573|gb|EGQ98548.1| arginyl-tRNA synthetase [Vibrio cholerae HCUF01]
 gi|341620821|gb|EGS46575.1| arginyl-tRNA synthetase [Vibrio cholerae HC-48A1]
 gi|341621020|gb|EGS46772.1| arginyl-tRNA synthetase [Vibrio cholerae HC-70A1]
 gi|341621734|gb|EGS47469.1| arginyl-tRNA synthetase [Vibrio cholerae HC-40A1]
 gi|341637012|gb|EGS61704.1| arginyl-tRNA synthetase [Vibrio cholerae HFU-02]
 gi|341646095|gb|EGS70213.1| arginyl-tRNA synthetase [Vibrio cholerae HC-38A1]
 gi|356417116|gb|EHH70735.1| arginyl-tRNA synthetase [Vibrio cholerae HC-06A1]
 gi|356418019|gb|EHH71626.1| arginyl-tRNA synthetase [Vibrio cholerae HC-21A1]
 gi|356422475|gb|EHH75949.1| arginyl-tRNA synthetase [Vibrio cholerae HC-19A1]
 gi|356428113|gb|EHH81342.1| arginyl-tRNA synthetase [Vibrio cholerae HC-22A1]
 gi|356430346|gb|EHH83555.1| arginyl-tRNA synthetase [Vibrio cholerae HC-23A1]
 gi|356432932|gb|EHH86127.1| arginyl-tRNA synthetase [Vibrio cholerae HC-28A1]
 gi|356439488|gb|EHH92457.1| arginyl-tRNA synthetase [Vibrio cholerae HC-32A1]
 gi|356444882|gb|EHH97691.1| arginyl-tRNA synthetase [Vibrio cholerae HC-43A1]
 gi|356445301|gb|EHH98108.1| arginyl-tRNA synthetase [Vibrio cholerae HC-33A2]
 gi|356450630|gb|EHI03347.1| arginyl-tRNA synthetase [Vibrio cholerae HC-48B2]
 gi|356452652|gb|EHI05331.1| arginyl-tRNA synthetase [Vibrio cholerae HC-61A1]
 gi|378795407|gb|AFC58878.1| arginyl-tRNA synthetase [Vibrio cholerae IEC224]
 gi|395916148|gb|EJH26978.1| arginyl-tRNA synthetase [Vibrio cholerae CP1032(5)]
 gi|395917480|gb|EJH28308.1| arginyl-tRNA synthetase [Vibrio cholerae CP1041(14)]
 gi|395918834|gb|EJH29658.1| arginyl-tRNA synthetase [Vibrio cholerae CP1038(11)]
 gi|395927836|gb|EJH38599.1| arginyl-tRNA synthetase [Vibrio cholerae CP1042(15)]
 gi|395928611|gb|EJH39364.1| arginyl-tRNA synthetase [Vibrio cholerae CP1046(19)]
 gi|395931898|gb|EJH42642.1| arginyl-tRNA synthetase [Vibrio cholerae CP1048(21)]
 gi|395939509|gb|EJH50191.1| arginyl-tRNA synthetase [Vibrio cholerae HC-20A2]
 gi|395942538|gb|EJH53214.1| arginyl-tRNA synthetase [Vibrio cholerae HC-46A1]
 gi|395958463|gb|EJH68947.1| arginyl-tRNA synthetase [Vibrio cholerae HC-56A2]
 gi|395959028|gb|EJH69477.1| arginyl-tRNA synthetase [Vibrio cholerae HC-57A2]
 gi|395961975|gb|EJH72284.1| arginyl-tRNA synthetase [Vibrio cholerae HC-42A1]
 gi|395970570|gb|EJH80317.1| arginyl-tRNA synthetase [Vibrio cholerae HC-47A1]
 gi|395972993|gb|EJH82567.1| arginyl-tRNA synthetase [Vibrio cholerae CP1030(3)]
 gi|395975429|gb|EJH84920.1| arginyl-tRNA synthetase [Vibrio cholerae CP1047(20)]
 gi|408006862|gb|EKG44978.1| arginyl-tRNA synthetase [Vibrio cholerae HC-39A1]
 gi|408012445|gb|EKG50223.1| arginyl-tRNA synthetase [Vibrio cholerae HC-41A1]
 gi|408031775|gb|EKG68380.1| arginyl-tRNA synthetase [Vibrio cholerae CP1040(13)]
 gi|408041309|gb|EKG77423.1| arginyl-tRNA synthetase [Vibrio Cholerae CP1044(17)]
 gi|408042719|gb|EKG78756.1| arginyl-tRNA synthetase [Vibrio cholerae CP1050(23)]
 gi|408052855|gb|EKG87879.1| arginyl-tRNA synthetase [Vibrio cholerae HC-81A2]
 gi|408607835|gb|EKK81238.1| arginine--tRNA ligase [Vibrio cholerae CP1033(6)]
 gi|408622995|gb|EKK95954.1| arginine--tRNA ligase [Vibrio cholerae HC-17A1]
 gi|408633575|gb|EKL05904.1| arginine--tRNA ligase [Vibrio cholerae HC-50A2]
 gi|408654380|gb|EKL25522.1| arginine--tRNA ligase [Vibrio cholerae HC-77A1]
 gi|408655311|gb|EKL26436.1| arginine--tRNA ligase [Vibrio cholerae HC-62A1]
 gi|408845460|gb|EKL85576.1| arginine--tRNA ligase [Vibrio cholerae HC-37A1]
 gi|408845597|gb|EKL85712.1| arginine--tRNA ligase [Vibrio cholerae HC-17A2]
 gi|408870405|gb|EKM09685.1| arginine--tRNA ligase [Vibrio cholerae HC-62B1]
 gi|408879022|gb|EKM18015.1| arginine--tRNA ligase [Vibrio cholerae HC-69A1]
 gi|443431376|gb|ELS73928.1| arginyl-tRNA synthetase [Vibrio cholerae HC-64A1]
 gi|443434952|gb|ELS81097.1| arginyl-tRNA synthetase [Vibrio cholerae HC-65A1]
 gi|443438778|gb|ELS88494.1| arginyl-tRNA synthetase [Vibrio cholerae HC-67A1]
 gi|443443139|gb|ELS96441.1| arginyl-tRNA synthetase [Vibrio cholerae HC-68A1]
 gi|443446940|gb|ELT03596.1| arginyl-tRNA synthetase [Vibrio cholerae HC-71A1]
 gi|443449747|gb|ELT10038.1| arginyl-tRNA synthetase [Vibrio cholerae HC-72A2]
 gi|443457399|gb|ELT24796.1| arginyl-tRNA synthetase [Vibrio cholerae HC-7A1]
 gi|443461000|gb|ELT32075.1| arginyl-tRNA synthetase [Vibrio cholerae HC-80A1]
 gi|443465452|gb|ELT40112.1| arginyl-tRNA synthetase [Vibrio cholerae HC-81A1]
          Length = 577

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 322 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKANIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 478



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 577



 Score = 45.1 bits (105), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|300723081|ref|YP_003712379.1| arginine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297629596|emb|CBJ90199.1| arginine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 576

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 236/445 (53%), Gaps = 60/445 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  +HA+  A    G    S A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQAILSDKISHALIAA----GAPAGSEAHVRQSAKAQFGDYQANGVMAAAKKVG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI------K 318
              P  +A+ +  ++         L  +  KIE+A PGF+N+FL + +    +      K
Sbjct: 53  -MPPRQLAEKVVGLL--------DLQGIASKIEIAGPGFINIFLDKDWIATHLETALKDK 103

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + ++ V P T      +++D+S+PN+AK+MH+GH+RSTIIGD  +R LE+LGH+V+R N
Sbjct: 104 KLGISPVNPQT------IVIDYSAPNVAKQMHIGHIRSTIIGDAAARTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           H+GDWGTQFGMLIA+L+ K  +       +ADL+ FY+E+KK +DEDE F  RA   VV 
Sbjct: 158 HLGDWGTQFGMLIAYLE-KVQNENASDMALADLEEFYREAKKTYDEDEEFAIRARSYVVR 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   +  W  + D++    Q+ Y+RLNVTLTE+   GES Y   +  +V  L++KG
Sbjct: 217 LQGGDEYCRTMWRKLVDITMSQNQETYNRLNVTLTEKDMMGESLYNDMLPDVVADLKQKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    DG  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESDGATVVYLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRHEVLHADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+   +   +H+      FGM++   +D  
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYIPESLSLEHHM------FGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKRFD 632
           P + T++     L     E+ +R D
Sbjct: 379 P-FKTRAGGTVKLSDLLDEAIERAD 402



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 192/354 (54%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R LE+LGH+V+R NH+GDWGTQFGMLIA+L+ K  +       +ADL+ FY
Sbjct: 135 STIIGDAAARTLEFLGHNVIRANHLGDWGTQFGMLIAYLE-KVQNENASDMALADLEEFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +DEDE F  RA   VV LQ  D   +  W  + D++    Q+ Y+RLNVTLTE+
Sbjct: 194 REAKKTYDEDEEFAIRARSYVVRLQGGDEYCRTMWRKLVDITMSQNQETYNRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + KK G    
Sbjct: 254 DMMGESLYNDMLPDVVADLKQKGLAVESDGATVVYLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRHEVLHADRVLYYIDSRQHQHLMQAWTIVRKAGYI-PESLSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKLS+LLDE + R+   +++KN   ++   EL +  +AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLSDLLDEAIERADTLIREKN--PDMPEDELKKVIEAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ SI + A I+     +P
Sbjct: 431 YADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVNSIFKRAEIDESSLTQP 484



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ ++   EL +  +AV  G +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  REKNPDMPEDELKKVIEAVGIGAVKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ SI + A I+   L     + PV L   +E  LA  LL+  + +  V R+   H +C 
Sbjct: 466  RVNSIFKRAEIDESSL-----TQPVILNEGREQTLATRLLQFEETITTVAREGTPHVMCS 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY++C  +  D+E     +   RL LA  TAK +K+  + L I+TV +M
Sbjct: 521  YLYDLAGLFSGFYEHCPILNADSE----EIRQSRLKLALLTAKTLKQGLETLGIQTVERM 576



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  +HA+  A    G    S A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQAILSDKISHALIAA----GAPAGSEAHVRQSAKAQFGDYQANGVMAAAKKVG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM------K 122
              P  +A+ +  ++         L  +  KIE A PGF+N+FL + +    +      K
Sbjct: 53  -MPPRQLAEKVVGLL--------DLQGIASKIEIAGPGFINIFLDKDWIATHLETALKDK 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + ++ V P T      +++D+S+PN+A++
Sbjct: 104 KLGISPVNPQT------IVIDYSAPNVAKQ 127


>gi|315634078|ref|ZP_07889367.1| arginine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315477328|gb|EFU68071.1| arginine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 577

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 135/330 (40%), Positives = 194/330 (58%), Gaps = 30/330 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQS+             L  + +K E+A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----LNPREFAQSVLD--------KAELQDIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLN----KKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N+FL   +    + D I   VQ P L     +K  V+VD+SSPN+AKEMHVGHLRSTI
Sbjct: 82  FINIFLKDTW----LADNISRAVQDPKLGVHNPEKQTVVVDYSSPNVAKEMHVGHLRSTI 137

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +
Sbjct: 138 IGDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFYRAA 196

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER--- 475
           KK +DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLT++   
Sbjct: 197 KKHYDEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTDKDVM 256

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTS 530
           GES Y   +  +V  L+K+GL   DDG  +++ +   ++   PM ++  K DGGF Y T+
Sbjct: 257 GESLYNPMLPGIVEDLKKQGLAVEDDGALVVYLDEFKNKDGDPMGVIVQKKDGGFLYTTT 316

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           D+AA + R E  KA+  +  +D  Q  H +
Sbjct: 317 DIAAAKYRYETLKANRALVFSDTRQSQHMQ 346



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/340 (39%), Positives = 188/340 (55%), Gaps = 54/340 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLT++
Sbjct: 194 RAAKKHYDEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTDK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPGIVEDLKKQGLAVEDDGALVVYLDEFKNKDGDPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  +++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLEHKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSGDTVKL++LLDE + R+   +  K+  T L+  E ++  +AV  G +K
Sbjct: 373 LGKDGKPFKTRSGDTVKLADLLDEAIERAGVLISQKS--TALSEQEKADVIEAVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI
Sbjct: 431 YADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSI 470



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSEQEKADVIEAVGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + I   ++  A     +S+  EKE ALA  LL+  + + +V ++   H LC YL
Sbjct: 468  RSIFNRSQIALSEVEQAT----LSITDEKERALAIKLLQFEEAVQVVGKEGTPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  D       V   RL LA  T + +K+  D+L I+TV KM
Sbjct: 524  YELAGVFSSFYEHCPILNNDDH----QVKLSRLKLALLTERTLKQGLDLLGIKTVEKM 577



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 21/110 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQS+             L  + +K E A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----LNPREFAQSVLD--------KAELQDIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLN----KKLRVLVDFSSPNIARK 152
           F+N+FL   +    + D I   VQ P L     +K  V+VD+SSPN+A++
Sbjct: 82  FINIFLKDTW----LADNISRAVQDPKLGVHNPEKQTVVVDYSSPNVAKE 127


>gi|423109075|ref|ZP_17096770.1| arginyl-tRNA synthetase [Klebsiella oxytoca 10-5243]
 gi|376383269|gb|EHS95997.1| arginyl-tRNA synthetase [Klebsiella oxytoca 10-5243]
          Length = 577

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/393 (37%), Positives = 212/393 (53%), Gaps = 49/393 (12%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L+ + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLSGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII----VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N+FL   +  E +   +    +   QPP       V+VD+S+PN+AKEMHVGHLRSTI
Sbjct: 82  FINIFLDPAFLAENVSSALKSERLGVAQPPAQT----VVVDYSAPNVAKEMHVGHLRSTI 137

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+
Sbjct: 138 IGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREA 196

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---R 475
           KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT     
Sbjct: 197 KKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYNRLNVTLTRDDVM 256

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTY 527
           GES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y
Sbjct: 257 GESLYNPMLPGIVADLKDKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLY 313

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +
Sbjct: 314 TTTDIACAKYRYENLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEH 366

Query: 588 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           H+      FGM++      F      +  +ADL
Sbjct: 367 HM------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 186/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKDKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYENLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADID 477



 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDESALVAA----PVVIIEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCSYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 21/110 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L+ + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLSGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII----VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E +   +    +   QPP       V+VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAENVSSALKSERLGVAQPPAQT----VVVDYSAPNVAKE 127


>gi|403058253|ref|YP_006646470.1| arginyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PCC21]
 gi|402805579|gb|AFR03217.1| arginyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PCC21]
          Length = 576

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 150/414 (36%), Positives = 226/414 (54%), Gaps = 57/414 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++        +L  + +K E+A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V+P T      +++D+S+PN+AKEMHVGHLRSTIIGD  +R LE+LGH+V+R N
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKEMHVGHLRSTIIGDASARTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNESASEMDLSDLEAFYREAKKHYDEDADFAERARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  Y+RLNVTLT++   GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRQMWRKLVDITMTQNQINYERLNVTLTKQDVMGESLYNSMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLNADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +Y  D  Q  H  L++  TI+     R   Y+  D V L H       FGM++ 
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVSLEH-----HMFGMMLG 374



 Score =  231 bits (588), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/361 (39%), Positives = 195/361 (54%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDASARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNESASEMDL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+E+KK +DED  F +RA   VV LQ  D   ++ W  + D++    Q  Y+RL
Sbjct: 187 SDLEAFYREAKKHYDEDADFAERARAYVVKLQGGDEYCRQMWRKLVDITMTQNQINYERL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT++   GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTKQDVMGESLYNSMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLNADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KLSELLDE   R+L  + +KN   E    EL+   + 
Sbjct: 366 HHMFGMMLGKDGKPFKTRAGGTIKLSELLDEAYDRALKLIAEKNPQME--SDELTTLAKV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V+ G IKYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI + AGI  +   +
Sbjct: 424 VSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGIQEDSLTQ 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  143 bits (361), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 111/188 (59%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  + +KN   E    EL+   + V+ G IKYADLS +R  DYVF +D ML   GNTA
Sbjct: 400  RALKLIAEKNPQME--SDELTTLAKVVSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI + AGI  + L     + P++L  E+EFALA  LL+  + +  V R+
Sbjct: 458  PYMQYAYTRVASIFKRAGIQEDSL-----TQPITLSDEREFALATRLLQFEETITSVARE 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  +++     V   RL LA  TAK +K+  D L
Sbjct: 513  GTPHVMCSYLYDLAGLFSGFYEHCPILNAESD----NVRQSRLRLALLTAKTLKQGLDTL 568

Query: 1112 NIRTVHKM 1119
             I TV KM
Sbjct: 569  GIETVEKM 576



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++        +L  + +K E A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V+P T      +++D+S+PN+A++
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKE 127


>gi|15642074|ref|NP_231706.1| arginyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121586898|ref|ZP_01676678.1| arginyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121727379|ref|ZP_01680518.1| arginyl-tRNA synthetase [Vibrio cholerae V52]
 gi|153818393|ref|ZP_01971060.1| arginyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|153821699|ref|ZP_01974366.1| arginyl-tRNA synthetase [Vibrio cholerae B33]
 gi|227082200|ref|YP_002810751.1| arginyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229507837|ref|ZP_04397342.1| arginyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229511927|ref|ZP_04401406.1| arginyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229519063|ref|ZP_04408506.1| arginyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229607382|ref|YP_002878030.1| arginyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254849161|ref|ZP_05238511.1| arginyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|298497899|ref|ZP_07007706.1| arginyl-tRNA synthetase [Vibrio cholerae MAK 757]
 gi|9656621|gb|AAF95220.1| arginyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548834|gb|EAX58877.1| arginyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121630271|gb|EAX62669.1| arginyl-tRNA synthetase [Vibrio cholerae V52]
 gi|126511083|gb|EAZ73677.1| arginyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|126520797|gb|EAZ78020.1| arginyl-tRNA synthetase [Vibrio cholerae B33]
 gi|227010088|gb|ACP06300.1| arginyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229343752|gb|EEO08727.1| arginyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229351892|gb|EEO16833.1| arginyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229355342|gb|EEO20263.1| arginyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229370037|gb|ACQ60460.1| arginyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254844866|gb|EET23280.1| arginyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|297542232|gb|EFH78282.1| arginyl-tRNA synthetase [Vibrio cholerae MAK 757]
          Length = 599

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 103

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 163

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 164 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 223

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 224 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 283

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 284 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 343

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 344 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 391

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 392 -FGMMLGKDGRPFKTRAGGTVRLADL 416



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 157 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 216

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 217 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 276

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 277 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 336

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 337 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 395

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 396 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKANIANTVAMAAVK 453

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 454 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 500



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 429  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 488

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 489  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 543

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 544  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 599



 Score = 44.7 bits (104), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 103

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE 149


>gi|410634728|ref|ZP_11345361.1| arginyl-tRNA synthetase [Glaciecola arctica BSs20135]
 gi|410145771|dbj|GAC22228.1| arginyl-tRNA synthetase [Glaciecola arctica BSs20135]
          Length = 578

 Score =  236 bits (603), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 133/328 (40%), Positives = 188/328 (57%), Gaps = 21/328 (6%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FG +Q N AMAL K+ K     +NP DIAQ I  VV         L  + +K+EVA PGF
Sbjct: 36  FGHYQFNGAMALSKVLK-----QNPRDIAQKIVDVV--------ELDDIAEKLEVAGPGF 82

Query: 304 VNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 363
           +N+ L   +  +Q++    +        ++  V+VD+S+PN+AKEMHVGHLRSTIIGD +
Sbjct: 83  INIHLKPQWLAQQLQAANADSRLGIEAEQQQTVVVDYSAPNLAKEMHVGHLRSTIIGDAV 142

Query: 364 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 423
           ++ LE+LGH V+R NH+GDWGTQFGMLI HL DK          ++DL+ FY+ +K RFD
Sbjct: 143 AKTLEFLGHKVIRQNHMGDWGTQFGMLITHLNDKLAADGVAETALSDLEDFYRAAKVRFD 202

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFY 480
            ++ F  RA + VV LQ  DP+    W+    +S    + +YD+LNV+L      GES Y
Sbjct: 203 NEDGFADRARENVVKLQSGDPECLSLWKTFVTISIAHSEHVYDKLNVSLKRSDIMGESAY 262

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAI 535
            K +   V  L+  G++    G ++ +     +  G+    IV KS GG+ Y T+D AAI
Sbjct: 263 NKDLAATVAELKSSGIVVESQGAQVAFLQEMADKEGNPAAYIVQKSGGGYLYATTDQAAI 322

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           R R     AD  +  TD+ Q +HF+  E
Sbjct: 323 RYRNGVLGADRTLIFTDVRQALHFKQTE 350



 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/379 (37%), Positives = 200/379 (52%), Gaps = 57/379 (15%)

Query: 536 RQRIEEEKADWIVY---VTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           R  IE E+   +V      +L + +H   L  STIIGD +++ LE+LGH V+R NH+GDW
Sbjct: 104 RLGIEAEQQQTVVVDYSAPNLAKEMHVGHLR-STIIGDAVAKTLEFLGHKVIRQNHMGDW 162

Query: 593 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 652
           GTQFGMLI HL DK          ++DL+ FY+ +K RFD ++ F  RA + VV LQ  D
Sbjct: 163 GTQFGMLITHLNDKLAADGVAETALSDLEDFYRAAKVRFDNEDGFADRARENVVKLQSGD 222

Query: 653 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYL--------- 700
           P+    W+    +S    + +YD+LNV+L      GES Y K +   V  L         
Sbjct: 223 PECLSLWKTFVTISIAHSEHVYDKLNVSLKRSDIMGESAYNKDLAATVAELKSSGIVVES 282

Query: 701 ------------EKKGNLS--LTKKLGIVYV------------------------TDLGQ 722
                       +K+GN +  + +K G  Y+                        TD+ Q
Sbjct: 283 QGAQVAFLQEMADKEGNPAAYIVQKSGGGYLYATTDQAAIRYRNGVLGADRTLIFTDVRQ 342

Query: 723 GVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRR 782
            +HF+  E  A+KAG + P +T  +   FG++LG D K FKTR+G TVKL+ELLDE + R
Sbjct: 343 ALHFKQTEIVARKAGFIKPTQT-YEHCPFGMMLGSDGKPFKTRTGGTVKLAELLDEAIER 401

Query: 783 SLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAV 842
           +  ++    R ++L+  E       V  G +KYADLS NR  DY+F++D ML   GNTA 
Sbjct: 402 A--EVLINQRESDLSAQERKIIADKVGIGAVKYADLSKNRTTDYIFNWDSMLSFEGNTAP 459

Query: 843 YLLYAYTRIASIARTAGIN 861
           YL YAY R+ SI R A ++
Sbjct: 460 YLQYAYARVQSIFRKAHVD 478



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 101/179 (56%), Gaps = 8/179 (4%)

Query: 941  NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
             R ++L+  E       V  G +KYADLS NR  DY+F++D ML   GNTA YL YAY R
Sbjct: 408  QRESDLSAQERKIIADKVGIGAVKYADLSKNRTTDYIFNWDSMLSFEGNTAPYLQYAYAR 467

Query: 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
            + SI R A ++  +L+       + LE  +E  LA  L++  + +  V+ +   H LC Y
Sbjct: 468  VQSIFRKAHVDDVNLQ-----ADIQLEEVQEQLLAVKLMQYVEAIKQVSSEATPHVLCAY 522

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            +Y++++ F  FY+ C  +++  E + K     RL+LA+ TAK ++   D+L I T+ KM
Sbjct: 523  IYELASLFMSFYEACPILKEGIEEQTK---NSRLMLAQLTAKTLQSGLDLLGIETMEKM 578



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 15/126 (11%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FG +Q N AMAL K+ K     +NP DIAQ I  VV         L  + +K+E A PGF
Sbjct: 36  FGHYQFNGAMALSKVLK-----QNPRDIAQKIVDVV--------ELDDIAEKLEVAGPGF 82

Query: 108 VNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDI 167
           +N+ L   +  +Q++    +        ++  V+VD+S+PN+A++      HL S I   
Sbjct: 83  INIHLKPQWLAQQLQAANADSRLGIEAEQQQTVVVDYSAPNLAKE--MHVGHLRSTIIGD 140

Query: 168 LISKAI 173
            ++K +
Sbjct: 141 AVAKTL 146


>gi|386745334|ref|YP_006218513.1| arginyl-tRNA synthetase [Providencia stuartii MRSN 2154]
 gi|384482027|gb|AFH95822.1| arginyl-tRNA synthetase [Providencia stuartii MRSN 2154]
          Length = 576

 Score =  236 bits (603), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 210/375 (56%), Gaps = 34/375 (9%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+Q A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAILSDKISAAMQAA----GAPEGSDALVRQSAKAQFGDYQANGVMGAAKKMG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP  +A+ I S        +  L  +  K+E+A PGF+N+FL   +   Q++  +   
Sbjct: 53  -INPRQLAEQIVS--------HLDLEGIASKVEIAGPGFINIFLEPSWLTTQVEQALTCD 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+ P    K   +++D+S+PN+AK+MHVGHLRSTIIGD  +R LE+LGH V+R NHVG
Sbjct: 104 RLGLSPV---KSETIVIDYSAPNVAKQMHVGHLRSTIIGDAAARTLEFLGHKVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       +ADL+ FY+E+K+ +D DE+F +RA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNENASDMALADLEEFYREAKQHYDSDEVFAERARGYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   +K W  + D++ +  Q+ Y RLNVTLTE    GES Y   +  +V  L+ KGL  
Sbjct: 220 GDEYCRKMWRKLVDITMQQNQETYRRLNVTLTEDDVMGESLYNDMLPGIVADLKAKGLAV 279

Query: 499 LDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
             +G  +++ ++   +   PM ++  K DGGF Y T+D+A  + R E   AD  +Y  D 
Sbjct: 280 ESEGATVVYLDEFKTKEGEPMGVIVQKKDGGFLYTTTDIACAKYRHEVLHADRALYYIDS 339

Query: 554 GQGVHFRLLEESTII 568
            Q  H  L++  TI+
Sbjct: 340 RQ--HQHLMQAWTIV 352



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 193/368 (52%), Gaps = 58/368 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R LE+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +ADL+ FY
Sbjct: 135 STIIGDAAARTLEFLGHKVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMALADLEEFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K+ +D DE+F +RA   VV LQ  D   +K W  + D++ +  Q+ Y RLNVTLTE 
Sbjct: 194 REAKQHYDSDEVFAERARGYVVKLQSGDEYCRKMWRKLVDITMQQNQETYRRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
              GES Y   +  +V  L+ KG    ++   +VY+                        
Sbjct: 254 DVMGESLYNDMLPGIVADLKAKGLAVESEGATVVYLDEFKTKEGEPMGVIVQKKDGGFLY 313

Query: 718 --TDLG---------------------QGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
             TD+                      Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRHEVLHADRALYYIDSRQHQHLMQAWTIVRKAGYI-PESMSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TV+LS+LLDE + R+   ++ KN   ++   EL+     V  G +K
Sbjct: 373 LGKDGKPFKTRSGGTVRLSDLLDEAIERAQVLIRSKN--PDMPEDELNNVANVVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP----DP 870
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + A +   D   P    DP
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKKANVTQADLTLPIVLQDP 490

Query: 871 SQSEVEDR 878
            +  +  R
Sbjct: 491 REIALATR 498



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 105/180 (58%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ ++   EL+     V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 406  RSKNPDMPEDELNNVANVVGIGSVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI + A +   DL     + P+ L+  +E ALA  L++  + +++V RD   H +C 
Sbjct: 466  RVASIFKKANVTQADL-----TLPIVLQDPREIALATRLMQFEETILMVARDGTPHVMCA 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY++C  +  + E + ++    RL LA  T K +K   D L I TV +M
Sbjct: 521  YLYDLAGLFSSFYEHCPILSAEDEAQRQS----RLKLALLTQKTLKAGLDTLGIDTVERM 576



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+Q A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAILSDKISAAMQAA----GAPEGSDALVRQSAKAQFGDYQANGVMGAAKKMG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP  +A+ I S        +  L  +  K+E A PGF+N+FL   +   Q++  +   
Sbjct: 53  -INPRQLAEQIVS--------HLDLEGIASKVEIAGPGFINIFLEPSWLTTQVEQALTCD 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             G+ P    K   +++D+S+PN+A++
Sbjct: 104 RLGLSPV---KSETIVIDYSAPNVAKQ 127


>gi|423685568|ref|ZP_17660376.1| arginyl-tRNA synthetase [Vibrio fischeri SR5]
 gi|371495480|gb|EHN71076.1| arginyl-tRNA synthetase [Vibrio fischeri SR5]
          Length = 577

 Score =  236 bits (603), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 165/493 (33%), Positives = 250/493 (50%), Gaps = 53/493 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +  +Q +  + +        ++  ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAKQAEAALADERLGVAKEEQQNIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V R NH+GDWGTQFGMLIA+L+    +    S  ++DL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHNVTRANHIGDWGTQFGMLIANLERIQKEKGEVSMELSDLEGFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F   A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVTARGYVVKLQGGDEFCAEMWKKLVDVTMVQNQRNYDRLNVSLTRDNVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+K+GL    +G ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNSMLAPIVADLQKQGLAVESEGAQVVFLDEYKNKDGEPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYEELNADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDED-------EIFKKRAYQCVVA 647
            FGM++      F      +  +ADL    +E   +  E+       E   K A    +A
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADLLDEAEERATKLIEEKNKDLSAEEKAKIATTVAMA 428

Query: 648 LQRFDPDYKKAWEMICDVSR-RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNL 706
             ++            D+S+ R    I+D  N+   E   + Y ++    V  +  K  L
Sbjct: 429 AVKY-----------SDLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFSKAGL 477

Query: 707 SLTKKLGIVYVTD 719
           S+ +  G V +TD
Sbjct: 478 SMDELTGEVKITD 490



 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 191/357 (53%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LGH+V R NH+GDWGTQFGMLIA+L+    +    S  +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGHNVTRANHIGDWGTQFGMLIANLERIQKEKGEVSMEL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+ESKK +DEDE F   A   VV LQ  D    + W+ + DV+    Q+ YDRL
Sbjct: 188 SDLEGFYRESKKLYDEDEEFAVTARGYVVKLQGGDEFCAEMWKKLVDVTMVQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NV+LT     GES Y   +  +V  L+K+G                         + + K
Sbjct: 248 NVSLTRDNVMGESMYNSMLAPIVADLQKQGLAVESEGAQVVFLDEYKNKDGEPMGVIVQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 308 RDGGFLYTTTDIACAKYRYEELNADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D + FKTR+G TV+L++LLDE   R+   +++KN+  +L+  E ++    
Sbjct: 367 HHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAEERATKLIEEKNK--DLSAEEKAKIATT 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           VA   +KY+DLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI   AG++ ++
Sbjct: 425 VAMAAVKYSDLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFSKAGLSMDE 481



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 107/188 (56%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   +++KN+  +L+  E ++    VA   +KY+DLS +R  DY+F +D ML   GNTA
Sbjct: 401  RATKLIEEKNK--DLSAEEKAKIATTVAMAAVKYSDLSKHRTTDYIFDWDNMLAFEGNTA 458

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI   AG++ ++L     +  V +  EKE AL   L++  + +  V  +
Sbjct: 459  PYMQYAYTRVASIFSKAGLSMDEL-----TGEVKITDEKEKALVAKLMQFEEAVQAVASE 513

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YL++++  FS FY+ C  +  + +     V   RL LA  TAK +K+  ++L
Sbjct: 514  GQPHLMCAYLFELAGQFSSFYEACPILNNEDD----AVKQSRLKLAALTAKTIKQGLELL 569

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 570  GIETLERM 577



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+         L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------DLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +  +Q +  + +        ++  ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAKQAEAALADERLGVAKEEQQNIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|444346002|ref|ZP_21153999.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype c str. AAS4A]
 gi|443542175|gb|ELT52538.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype c str. AAS4A]
          Length = 577

 Score =  236 bits (603), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 213/386 (55%), Gaps = 35/386 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E+A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E I + + +         K  V+VD+SSPN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LG+ V+R NHVGDWGTQFGMLIA+L +K  +       ++DL+AFY+ +KK +
Sbjct: 142 VVRTLEFLGNHVIRANHVGDWGTQFGMLIAYL-EKMENEHASEMELSDLEAFYRAAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLTE+   GES 
Sbjct: 201 DEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEKDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L+K+GL   DDG  +++      +D G + + + K DGGF Y T+D+AA
Sbjct: 261 YNPMLPGIVEGLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E  KA+  +  +D  Q  H   ++++ +    I+R   Y+  D  +L H      
Sbjct: 321 AKYRYETLKANRALVFSDTRQSQH---MQQAWL----ITRKAGYV-PDSFQLEH-----K 367

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 368 NFGMMLGKYGKPFKTRSGDTVKLADL 393



 Score =  216 bits (550), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 134/340 (39%), Positives = 186/340 (54%), Gaps = 54/340 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLTE+
Sbjct: 194 RAAKKHYDEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPGIVEGLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  +++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLEHKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+  K FKTRSGDTVKL++LLDE + R+   +  K+  T L+  E ++  +AV  G +K
Sbjct: 373 LGKYGKPFKTRSGDTVKLADLLDEAIERAGVLISQKS--TALSEQEKADVIEAVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI
Sbjct: 431 YADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRIRSI 470



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 107/178 (60%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSEQEKADVIEAVGIGSVKYADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + I+  +++ A    P++L +EKE ALA  LL+  + + LV +D   H LC YL
Sbjct: 468  RSIFNRSQISPGEVKQA----PLTLTNEKERALAIKLLQFEEAIQLVAKDGTPHILCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + +     V   RL LA  T + +K+  D+L I+TV +M
Sbjct: 524  YELAGVFSSFYEHCPILNNEDQ----QVKLSRLKLALLTERTLKQGLDLLGIKTVERM 577



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E + + + +         K  V+VD+SSPN+A++
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKE 127


>gi|227329329|ref|ZP_03833353.1| arginyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 576

 Score =  236 bits (603), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 150/414 (36%), Positives = 226/414 (54%), Gaps = 57/414 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++        +L  + +K E+A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V+P T      +++D+S+PN+AKEMHVGHLRSTIIGD  +R LE+LGH+V+R N
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKEMHVGHLRSTIIGDASARTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNESASEMDLSDLEAFYREAKKHYDEDADFAERARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  Y+RLNVTLT++   GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRQMWRKLVDITMTQNQINYERLNVTLTKQDVMGESLYNSMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLNADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +Y  D  Q  H  L++  TI+     R   Y+  D V L H       FGM++ 
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVSLEH-----HMFGMMLG 374



 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/361 (39%), Positives = 195/361 (54%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDASARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNESASEMDL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+E+KK +DED  F +RA   VV LQ  D   ++ W  + D++    Q  Y+RL
Sbjct: 187 SDLEAFYREAKKHYDEDADFAERARAYVVKLQGGDEYCRQMWRKLVDITMTQNQINYERL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT++   GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTKQDVMGESLYNSMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLNADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KLSELLDE   R+L  + +KN   E    EL+   + 
Sbjct: 366 HHMFGMMLGKDGKPFKTRAGGTIKLSELLDEAYDRALKLIAEKNPQME--SDELTALAKV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V+ G IKYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI + AGI  +   +
Sbjct: 424 VSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGIQEDSLTQ 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  142 bits (359), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 111/188 (59%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  + +KN   E    EL+   + V+ G IKYADLS +R  DYVF +D ML   GNTA
Sbjct: 400  RALKLIAEKNPQME--SDELTALAKVVSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI + AGI  + L     + P++L  E+EFALA  LL+  + +  V R+
Sbjct: 458  PYMQYAYTRVASIFKRAGIQEDSL-----TQPITLNDEREFALATRLLQFEETITSVARE 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  +++     V   RL LA  TAK +K+  D L
Sbjct: 513  GTPHVMCSYLYDLAGLFSGFYEHCPILNAESD----DVRQSRLRLALLTAKTLKQGLDTL 568

Query: 1112 NIRTVHKM 1119
             I TV KM
Sbjct: 569  GIETVEKM 576



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++        +L  + +K E A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V+P T      +++D+S+PN+A++
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKE 127


>gi|386308151|ref|YP_006004207.1| arginyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|418243017|ref|ZP_12869513.1| arginyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           PhRBD_Ye1]
 gi|433549804|ref|ZP_20505848.1| Arginyl-tRNA synthetase [Yersinia enterocolitica IP 10393]
 gi|318605975|emb|CBY27473.1| arginyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|351777497|gb|EHB19705.1| arginyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           PhRBD_Ye1]
 gi|431788939|emb|CCO68888.1| Arginyl-tRNA synthetase [Yersinia enterocolitica IP 10393]
          Length = 576

 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 157/440 (35%), Positives = 235/440 (53%), Gaps = 54/440 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S     +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEPQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ +  ++         L  +  K+E+A PGF+N+FL R +   ++++ +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLDGIARKVEIAGPGFINIFLDRQWVASKVEEALKAP 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GVQP    +   ++VD+S+PN+AK+MHVGHLRSTIIGD   R LE+LGH+V+R NHVG
Sbjct: 104 KLGVQPV---EPQTIVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F KRA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFAKRARAYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   + ++V  L+ KGL  
Sbjct: 220 GDEYCRQMWRKLVDITMAQNQISYDRLNVTLTKDDVMGESLYNTMLPEIVADLKAKGLAV 279

Query: 499 LDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
             +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD ++Y 
Sbjct: 280 ESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  P +
Sbjct: 337 IDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGKP-F 380

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E+ +R
Sbjct: 381 KTRSGGTVKLSDLLDEAIER 400



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/357 (38%), Positives = 192/357 (53%), Gaps = 58/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F KRA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFAKRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQISYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNTMLPEIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +  +A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAIERAGKLIAEKN--PDMPADELKQVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ + AG++  +
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFKRAGVDESN 480



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 108/178 (60%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +  +AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVVEAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ + AG++  +L +     P+ +  ++E ALA  LL+  +V+  V R+   H +C YL
Sbjct: 468  VSVFKRAGVDESNLIL-----PLVITEDREAALATRLLQFEEVITTVAREGIPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D+E   ++    RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNADSEESRQS----RLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S     +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEPQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ +  ++         L  +  K+E A PGF+N+FL R +   ++++ +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLDGIARKVEIAGPGFINIFLDRQWVASKVEEALKAP 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             GVQP    +   ++VD+S+PN+A++
Sbjct: 104 KLGVQPV---EPQTIVVDYSAPNVAKQ 127


>gi|237807247|ref|YP_002891687.1| arginyl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|237499508|gb|ACQ92101.1| arginyl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 580

 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 142/358 (39%), Positives = 197/358 (55%), Gaps = 58/358 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD ++R +E+LGH V+R NH+GDWGTQFGMLIA+L +K  +       ++DL+AFY
Sbjct: 140 STVIGDAVTRTMEFLGHHVIRANHIGDWGTQFGMLIAYL-EKVQNEQASELELSDLEAFY 198

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +DEDE+F +RA   VV LQ  D   +  W+ + D++    Q IYDRLNV+L+E+
Sbjct: 199 REAKKHYDEDEVFAERARGYVVKLQGGDEYCRAMWKKLVDITMAQNQIIYDRLNVSLSEK 258

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + K+ G    
Sbjct: 259 DVMGESLYNPMLRTVVEDLQAKGLAVESEGALVVYLDEIKGKDGEAMAVIIQKRDGGFLY 318

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H +     A+KAG + P +  ++   FG++
Sbjct: 319 ATTDIACAKYRVETLKADRVLYFIDSRQHQHLQQAWMIARKAGYV-PEQVSLEHHAFGMM 377

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKLSELLDE   R+   + +K+   +L   E ++   AVA G +K
Sbjct: 378 LGKDGKPFKTRTGGTVKLSELLDEAELRAGALIAEKS--ADLPEAEKAKVIHAVAMGAVK 435

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQ 872
           YADLS NR  DY+F +D ML   GNTA YL YAYTRI SI R  G    D  +P P Q
Sbjct: 436 YADLSKNRTTDYIFDWDNMLTFEGNTAPYLQYAYTRIQSIFRRVG----DEAQPGPVQ 489



 Score =  229 bits (584), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 126/325 (38%), Positives = 192/325 (59%), Gaps = 23/325 (7%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K        KNP ++AQ I   + +        + ++ + E+A PGF+
Sbjct: 41  GDLATNLAMLLAK-----PAGKNPRELAQLIIEHLPA--------STLVARAEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN-GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 363
           N FL   +  +QI+ I  +   +         +++D+S+PN+AKEM V H+RST+IGD +
Sbjct: 88  NFFLDSAWLAKQIEAIAASPKAEVKAAAPAQTIVLDYSAPNVAKEMAVHHIRSTVIGDAV 147

Query: 364 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 423
           +R +E+LGH V+R NH+GDWGTQFGMLIA+L +K  +       ++DL+AFY+E+KK +D
Sbjct: 148 TRTMEFLGHHVIRANHIGDWGTQFGMLIAYL-EKVQNEQASELELSDLEAFYREAKKHYD 206

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFY 480
           EDE+F +RA   VV LQ  D   +  W+ + D++    Q IYDRLNV+L+E+   GES Y
Sbjct: 207 EDEVFAERARGYVVKLQGGDEYCRAMWKKLVDITMAQNQIIYDRLNVSLSEKDVMGESLY 266

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAI 535
              +  +V  L+ KGL    +G  +++     G+D  ++ + I K DGGF Y T+D+A  
Sbjct: 267 NPMLRTVVEDLQAKGLAVESEGALVVYLDEIKGKDGEAMAVIIQKRDGGFLYATTDIACA 326

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFR 560
           + R+E  KAD ++Y  D  Q  H +
Sbjct: 327 KYRVETLKADRVLYFIDSRQHQHLQ 351



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 94/178 (52%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            +  +L   E ++   AVA G +KYADLS NR  DY+F +D ML   GNTA YL YAYTRI
Sbjct: 413  KSADLPEAEKAKVIHAVAMGAVKYADLSKNRTTDYIFDWDNMLTFEGNTAPYLQYAYTRI 472

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI R  G         AQ  PV +    E  LA+ LL+ NDV+  V +    H LC YL
Sbjct: 473  QSIFRRVGDE-------AQPGPVQITAPAEETLAQKLLQFNDVVHNVAQKGMPHLLCTYL 525

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y++S  F  FY+ C     + EG        RL L +ATAK +     +L I T+ +M
Sbjct: 526  YELSGCFMSFYEACPI---NKEGVTAAEKGSRLTLCQATAKTLTLGLSLLGIETLERM 580



 Score = 42.7 bits (99), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K        KNP ++AQ I   + +        + ++ + E A PGF+
Sbjct: 41  GDLATNLAMLLAK-----PAGKNPRELAQLIIEHLPA--------STLVARAEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN-GVQPPTLNKKLRVLVDFSSPNIARK 152
           N FL   +  +Q++ I  +   +         +++D+S+PN+A++
Sbjct: 88  NFFLDSAWLAKQIEAIAASPKAEVKAAAPAQTIVLDYSAPNVAKE 132


>gi|262167694|ref|ZP_06035397.1| arginyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|262023899|gb|EEY42597.1| arginyl-tRNA synthetase [Vibrio cholerae RC27]
          Length = 592

 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 50  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 96

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 97  FINIFLSEEFLAAQAEAALADARLGVAQEAPKNIVADYSAPNVAKEMHVGHLRSTIIGDA 156

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 157 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 216

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 217 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 276

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 277 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 336

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 337 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 384

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 385 -FGMMLGKDGRPFKTRAGGTVRLADL 409



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 150 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 209

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 210 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 269

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 270 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 329

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 330 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 388

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 389 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKANIANTVAMAAVK 446

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 447 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 493



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 422  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 481

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 482  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 536

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 537  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 592



 Score = 45.1 bits (105), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 50  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 96

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 97  FINIFLSEEFLAAQAEAALADARLGVAQEAPKNIVADYSAPNVAKE 142


>gi|418794726|ref|ZP_13350444.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19449]
 gi|392760940|gb|EJA17771.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 19449]
          Length = 577

 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 214/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ+   + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVLQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ+   + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVLQALASDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|183598986|ref|ZP_02960479.1| hypothetical protein PROSTU_02431 [Providencia stuartii ATCC 25827]
 gi|188021202|gb|EDU59242.1| arginine--tRNA ligase [Providencia stuartii ATCC 25827]
          Length = 576

 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 28/372 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+Q A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAILSDKISAAMQAA----GAPEGSDALVRQSAKAQFGDYQANGVMGAAKKMG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP  +A+ I S        +  L  +  K+E+A PGF+N+FL   +   Q++  +   
Sbjct: 53  -INPRQLAEQIVS--------HLDLEGIASKVEIAGPGFINIFLEPSWLTTQVEQALTCD 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
               +  K   +++D+S+PN+AK+MHVGHLRSTIIGD  +R LE+LGH V+R NHVGDWG
Sbjct: 104 RLGLSSVKSETIVIDYSAPNVAKQMHVGHLRSTIIGDAAARTLEFLGHKVIRANHVGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+ K  +       +ADL+ FY+E+K+ +D DE+F +RA   VV LQ  D 
Sbjct: 164 TQFGMLIAYLE-KMQNENASDMALADLEEFYREAKQHYDSDEVFAERARGYVVKLQSGDE 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDD 501
             +K W  + D++ +  Q+ Y RLNVTLTE    GES Y   +  +V  L+ KGL    +
Sbjct: 223 YCRKMWRKLVDITMQQNQETYRRLNVTLTEDDVMGESLYNDMLPGIVADLKAKGLAVESE 282

Query: 502 GRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G  +++ ++   +   PM ++  K DGGF Y T+D+A  + R E   AD  +Y  D  Q 
Sbjct: 283 GATVVYLDEFKTKEGEPMGVIVQKKDGGFLYTTTDIACAKYRHEVLHADRALYYIDSRQ- 341

Query: 557 VHFRLLEESTII 568
            H  L++  TI+
Sbjct: 342 -HQHLMQAWTIV 352



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 193/368 (52%), Gaps = 58/368 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R LE+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +ADL+ FY
Sbjct: 135 STIIGDAAARTLEFLGHKVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMALADLEEFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K+ +D DE+F +RA   VV LQ  D   +K W  + D++ +  Q+ Y RLNVTLTE 
Sbjct: 194 REAKQHYDSDEVFAERARGYVVKLQSGDEYCRKMWRKLVDITMQQNQETYRRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
              GES Y   +  +V  L+ KG    ++   +VY+                        
Sbjct: 254 DVMGESLYNDMLPGIVADLKAKGLAVESEGATVVYLDEFKTKEGEPMGVIVQKKDGGFLY 313

Query: 718 --TDLG---------------------QGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
             TD+                      Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRHEVLHADRALYYIDSRQHQHLMQAWTIVRKAGYI-PESMSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TV+LS+LLDE + R+   ++ KN   ++   EL+     V  G +K
Sbjct: 373 LGKDGKPFKTRSGGTVRLSDLLDEAIERAQVLIRSKN--PDMPEDELNNVANVVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP----DP 870
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + A +   D   P    DP
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKKANVTQADLTLPIVLQDP 490

Query: 871 SQSEVEDR 878
            +  +  R
Sbjct: 491 REIALATR 498



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 105/180 (58%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ ++   EL+     V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 406  RSKNPDMPEDELNNVANVVGIGSVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI + A +   DL     + P+ L+  +E ALA  L++  + +++V RD   H +C 
Sbjct: 466  RVASIFKKANVTQADL-----TLPIVLQDPREIALATRLMQFEETILMVARDGTPHVMCA 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY++C  +  + E + ++    RL LA  T K +K   D L I TV +M
Sbjct: 521  YLYDLAGLFSSFYEHCPILSAEDEAQRQS----RLKLALLTQKTLKAGLDTLGIDTVERM 576



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 17/144 (11%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+Q A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAILSDKISAAMQAA----GAPEGSDALVRQSAKAQFGDYQANGVMGAAKKMG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP  +A+ I S        +  L  +  K+E A PGF+N+FL   +   Q++  +   
Sbjct: 53  -INPRQLAEQIVS--------HLDLEGIASKVEIAGPGFINIFLEPSWLTTQVEQALTCD 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
               +  K   +++D+S+PN+A++
Sbjct: 104 RLGLSSVKSETIVIDYSAPNVAKQ 127


>gi|444375953|ref|ZP_21175203.1| Arginyl-tRNA synthetase [Enterovibrio sp. AK16]
 gi|443679885|gb|ELT86535.1| Arginyl-tRNA synthetase [Enterovibrio sp. AK16]
          Length = 576

 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 144/398 (36%), Positives = 217/398 (54%), Gaps = 34/398 (8%)

Query: 231 ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLA 290
            S A+  +    +FGD+Q N  M + K         NP + AQ +  V+         L 
Sbjct: 23  GSPAAVRQSAKPQFGDYQANGIMGVAKKLG-----CNPREFAQKVLDVL--------DLD 69

Query: 291 KVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMH 350
            + +K E+A PGF+N+FLS  +   +  + + +        +K  ++VD+S+PN+AKEMH
Sbjct: 70  GMAEKTEIAGPGFINIFLSTEWLAAKADEALASDRLGVAEAEKQNIVVDYSAPNVAKEMH 129

Query: 351 VGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 410
           VGHLRSTIIGD + R LE++GH+V+R NH+GDWGTQFGMLIA+L+         S  ++D
Sbjct: 130 VGHLRSTIIGDAVVRTLEFMGHNVIRANHLGDWGTQFGMLIANLERHEAQGGDISMDLSD 189

Query: 411 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV 470
           ++ FY+ESKK +DEDE F K A   VV LQ  D   K+ W+ +  ++    Q+ YDRLNV
Sbjct: 190 IEGFYRESKKLYDEDEEFAKTARNYVVRLQSGDEYCKEKWQQLVKITLEQNQRNYDRLNV 249

Query: 471 TLTER---GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSD 522
           +LT++   GES Y   +  +V  L+ +GL   DDG  +++ E   ++   PM ++  K D
Sbjct: 250 SLTDKDVMGESMYNSMLAGIVEDLKAQGLAVEDDGAMVVFLEEYKNKDGEPMGVIIQKRD 309

Query: 523 GGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHD 582
           GGF Y T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   
Sbjct: 310 GGFLYTTTDIACAKYRYETFNADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPES 362

Query: 583 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +   +H       FGM++      F      +  +ADL
Sbjct: 363 MSLEHHA------FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 132/348 (37%), Positives = 187/348 (53%), Gaps = 53/348 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE++GH+V+R NH+GDWGTQFGMLIA+L+         S  ++D++ FY
Sbjct: 135 STIIGDAVVRTLEFMGHNVIRANHLGDWGTQFGMLIANLERHEAQGGDISMDLSDIEGFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F K A   VV LQ  D   K+ W+ +  ++    Q+ YDRLNV+LT++
Sbjct: 195 RESKKLYDEDEEFAKTARNYVVRLQSGDEYCKEKWQQLVKITLEQNQRNYDRLNVSLTDK 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ +G                         + + K+ G    
Sbjct: 255 DVMGESMYNSMLAGIVEDLKAQGLAVEDDGAMVVFLEEYKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETFNADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESMSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+L++LLDE   R+   +++KN   EL+  E       VA   +K
Sbjct: 374 LGKDGKPFKTRAGGTVRLADLLDEAEVRAKKLIEEKN--PELSAEEKDNIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   AGI++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFNKAGIDA 479



 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 102/180 (56%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ EL+  E       VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  EEKNPELSAEEKDNIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AGI++  +        + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFNKAGIDANSIE-----GQIIVSEEKEKALVCKLLQFEEAVDGVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL+D++  FS FY+ C  +  +AEG+ K     R+ LA  T++ +K+  D+L I T+ +M
Sbjct: 522  YLFDLAGTFSSFYEACPIL--NAEGETK---QSRMKLAALTSRTIKQGLDLLGINTLERM 576



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 15/130 (11%)

Query: 35  ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLA 94
            S A+  +    +FGD+Q N  M + K         NP + AQ +  V+         L 
Sbjct: 23  GSPAAVRQSAKPQFGDYQANGIMGVAKKLG-----CNPREFAQKVLDVL--------DLD 69

Query: 95  KVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGG 154
            + +K E A PGF+N+FLS  +   +  + + +        +K  ++VD+S+PN+A++  
Sbjct: 70  GMAEKTEIAGPGFINIFLSTEWLAAKADEALASDRLGVAEAEKQNIVVDYSAPNVAKE-- 127

Query: 155 FLYPHLPSQI 164
               HL S I
Sbjct: 128 MHVGHLRSTI 137


>gi|421354739|ref|ZP_15805071.1| arginyl-tRNA synthetase [Vibrio cholerae HE-45]
 gi|395953864|gb|EJH64477.1| arginyl-tRNA synthetase [Vibrio cholerae HE-45]
          Length = 577

 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E   ++   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 322 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PELSAEEKTNIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 478



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELSAEEKTNIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 577



 Score = 44.7 bits (104), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|237731911|ref|ZP_04562392.1| arginyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226907450|gb|EEH93368.1| arginyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 577

 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 148/389 (38%), Positives = 211/389 (54%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL  V+  + ++  + +     T   K  V+VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPVFLAQHVQQALASDRLGVTQPAKQTVVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHNVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ALADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 187/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADID 477



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L     +  V +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDESAL----ANAQVVISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     +   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENE----EIRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL  V+  + ++  + +     T   K  V+VD+S+PN+A++
Sbjct: 82  FINIFLDPVFLAQHVQQALASDRLGVTQPAKQTVVVDYSAPNVAKE 127


>gi|255745182|ref|ZP_05419131.1| arginyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262155960|ref|ZP_06029081.1| arginyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|360035956|ref|YP_004937719.1| arginyl-tRNA synthetase [Vibrio cholerae O1 str. 2010EL-1786]
 gi|440710271|ref|ZP_20890922.1| arginyl-tRNA synthetase [Vibrio cholerae 4260B]
 gi|449055503|ref|ZP_21734171.1| Arginyl-tRNA synthetase [Vibrio cholerae O1 str. Inaba G4222]
 gi|255737012|gb|EET92408.1| arginyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262030271|gb|EEY48914.1| arginyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|356647110|gb|AET27165.1| arginyl-tRNA synthetase [Vibrio cholerae O1 str. 2010EL-1786]
 gi|439974494|gb|ELP50671.1| arginyl-tRNA synthetase [Vibrio cholerae 4260B]
 gi|448264542|gb|EMB01779.1| Arginyl-tRNA synthetase [Vibrio cholerae O1 str. Inaba G4222]
          Length = 592

 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 50  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 96

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 97  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 156

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 157 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 216

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 217 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 276

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 277 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 336

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 337 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 384

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 385 -FGMMLGKDGRPFKTRAGGTVRLADL 409



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 150 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 209

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 210 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 269

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 270 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 329

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 330 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 388

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 389 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKANIANTVAMAAVK 446

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 447 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 493



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 422  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 481

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 482  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 536

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 537  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 592



 Score = 44.7 bits (104), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 50  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 96

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 97  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE 142


>gi|437899298|ref|ZP_20849733.1| arginyl-tRNA ligase, partial [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 6.0562-1]
 gi|435321856|gb|ELO94209.1| arginyl-tRNA ligase, partial [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 6.0562-1]
          Length = 360

 Score =  236 bits (602), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 134/337 (39%), Positives = 197/337 (58%), Gaps = 30/337 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTII 568
           +A  + R E   AD ++Y  D  Q  H  L++  TI+
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV 352



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 90/143 (62%), Gaps = 4/143 (2%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG 704
              GES Y   +  +V  L+ KG
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKG 276



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|387774126|ref|ZP_10129400.1| arginine--tRNA ligase [Haemophilus parahaemolyticus HK385]
 gi|386902676|gb|EIJ67511.1| arginine--tRNA ligase [Haemophilus parahaemolyticus HK385]
          Length = 575

 Score =  236 bits (602), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 136/329 (41%), Positives = 198/329 (60%), Gaps = 28/329 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K         NP + AQ I +        N +L  V +K+E+A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILA--------NVNLDGVAEKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII--VN-GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL++ +        +  VN G+Q  T N +  +++D+SSPN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLNKDWLANNANSALQAVNFGIQ--TANPQ-TIVIDYSSPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K
Sbjct: 139 GDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENENASQLELSDLEAFYRAAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
             +DED  F ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTLTE+   G
Sbjct: 198 AHYDEDAAFAEKARGYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLTEKDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   + ++V  L+ KGL   DDG  +++ +   ++   PM ++  K DGGF Y T+D
Sbjct: 258 ESLYNPMLPEIVADLKAKGLAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +AA + R E   AD ++  +D  Q  H +
Sbjct: 318 IAAAKYRYETLSADRVLVFSDSRQAQHMQ 346



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 141/356 (39%), Positives = 195/356 (54%), Gaps = 58/356 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENENASQLEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K  +DED  F ++A   VV LQ  D   +  W+ + D++    Q+ YDRL
Sbjct: 187 SDLEAFYRAAKAHYDEDAAFAEKARGYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLTE+   GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLTEKDVMGESLYNPMLPEIVADLKAKGLAVEDDGALVVFLDEFKNKDGDPMGVIVQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++  +D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLSADRVLVFSDSRQAQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKL +LLDE + R+ DKL  + R  ELT  E +   +A
Sbjct: 366 HPFFGMMLGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLISE-RSQELTAEEKAAVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           VA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   +GI+++
Sbjct: 424 VAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFARSGIDAD 479



 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 106/178 (59%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R  ELT  E +   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RSQELTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   +GI+++ L     +  + L  +KE ALA  LL+  + L  V +D   H LC+YL
Sbjct: 468  RSIFARSGIDADQL-----TGDIVLTEDKERALAVKLLQFEEALNGVAKDGMPHILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY+ C  +  +     ++V   RL LA  TAK +K+  D+L I+TV KM
Sbjct: 523  YELAGTFSSFYEACPILNAE-----ESVKNSRLRLAALTAKTLKQGLDLLGIKTVEKM 575



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 21/121 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K         NP + AQ I +        N +L  V +K+E A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILA--------NVNLDGVAEKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII--VN-GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           F+N+FL++ +        +  VN G+Q  T N +  +++D+SSPN+A++      HL S 
Sbjct: 82  FINIFLNKDWLANNANSALQAVNFGIQ--TANPQ-TIVIDYSSPNVAKE--MHVGHLRST 136

Query: 164 I 164
           I
Sbjct: 137 I 137


>gi|161511522|ref|NP_872860.2| arginyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 575

 Score =  236 bits (602), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 211/370 (57%), Gaps = 38/370 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+ +A  E   +     S+  +    FGD+Q N AMA  K       
Sbjct: 1   MNIQQILSDKIKQAMMIAGAEANVEPLVRQSSKPE----FGDYQANGAMAAAKK-----L 51

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK------ 318
             NP + AQ I          N  ++ ++DK+E+A PGF+N+FL   +  +Q        
Sbjct: 52  AMNPREFAQKILD--------NLDVSDMVDKLEIAGPGFINIFLKPSWLAKQANFALQAV 103

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
           +  +   QP T      +L+D+SSPN+AKEMHVGHLRSTIIGD + R LE+LG++V+R N
Sbjct: 104 NFGIKTAQPQT------ILIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +K+ +D D+IF ++A   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMENEQASEMQLSDLEAFYRAAKESYDSDQIFAEKARNYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   +  W+ + D++    Q+ YDRLNVTLTE+   GES Y   + ++V  L+ KG
Sbjct: 217 LQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLTEKDVMGESLYNPMLPEIVADLKAKG 276

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L   D+G  +++      +D   + + I KSDGGF Y T+D+AA + R E  K D  +  
Sbjct: 277 LAVEDNGAVVVFLDEFKNKDGDPMGVIIQKSDGGFLYTTTDIAAAKYRYETLKVDRALVF 336

Query: 551 TDLGQGVHFR 560
           +D  Q  H +
Sbjct: 337 SDSRQAQHMQ 346



 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 145/362 (40%), Positives = 196/362 (54%), Gaps = 60/362 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEQASEMQLSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+ +D D+IF ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTLTE+
Sbjct: 194 RAAKESYDSDQIFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG-----NLSLTKKL--------------------GIVY 716
              GES Y   + ++V  L+ KG     N ++   L                    G +Y
Sbjct: 254 DVMGESLYNPMLPEIVADLKAKGLAVEDNGAVVVFLDEFKNKDGDPMGVIIQKSDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P    ++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKVDRALVFSDSRQAQHMQQAWLITRKAGYV-PASFSLEHPFFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TVKL +LLDE + R+ DKL    R T LT  E S   +AVA G +K
Sbjct: 373 LGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLISA-RSTNLTVAEKSAVVEAVAIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           Y+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   A I      +PD    E
Sbjct: 431 YSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFARAEI------DPDTLTGE 484

Query: 875 VE 876
           ++
Sbjct: 485 MQ 486



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 102/178 (57%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T LT  E S   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RSTNLTVAEKSAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   A I+ + L     +  + L  EKE  LA  LL+  + L  V ++   H LC+YL
Sbjct: 468  RSIFARAEIDPDTL-----TGEMQLTEEKERTLALKLLQFEEALTAVAKEGMPHILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY+ C  +  D     + +   RL LA  TAK +K+  D+L I+TV KM
Sbjct: 523  YELAGIFSSFYEACPMLNAD-----EAIKHSRLRLASLTAKTLKQGLDLLGIKTVEKM 575



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+ +A  E   +     S+  +    FGD+Q N AMA  K       
Sbjct: 1   MNIQQILSDKIKQAMMIAGAEANVEPLVRQSSKPE----FGDYQANGAMAAAKK-----L 51

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK------ 122
             NP + AQ I          N  ++ ++DK+E A PGF+N+FL   +  +Q        
Sbjct: 52  AMNPREFAQKILD--------NLDVSDMVDKLEIAGPGFINIFLKPSWLAKQANFALQAV 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           +  +   QP T      +L+D+SSPN+A++
Sbjct: 104 NFGIKTAQPQT------ILIDYSSPNVAKE 127


>gi|37526009|ref|NP_929353.1| arginyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|39932033|sp|Q7N565.1|SYR_PHOLL RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|36785439|emb|CAE14385.1| Arginyl-tRNA synthetase (Arginine-tRNA ligase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 576

 Score =  236 bits (602), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 152/411 (36%), Positives = 222/411 (54%), Gaps = 51/411 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQAILSEKVSQALIAA----GAPADSEAHIRQSAKAQFGDYQANGVMAAAKKVG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ + +++        +L  +  K+E+A PGF+N+FL + +    I+  + + 
Sbjct: 53  -MPPRQLAEKVVNLL--------NLQGIASKVEIAGPGFINIFLDKAWIAANIETALKDE 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GV P    K   ++VD+S+PN+AK+MHVGHLRSTIIGD   R LE+LGH V+R NHVG
Sbjct: 104 KLGVTPA---KPQTIVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK +DEDE F  RA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KVQNENASDMALSDLEAFYREAKKHYDEDEEFAIRARGYVVKLQG 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W  + D++    Q+ YDRLNVTLT+    GES Y   +  +V  L+++GL  
Sbjct: 220 GDEYCRTMWRKLVDITMAQNQQTYDRLNVTLTKDSVMGESLYNDLLPSIVADLKQQGLAV 279

Query: 499 LDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
             DG  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD I+Y 
Sbjct: 280 ESDGATVVYLDEYKNKEGEPMGVI---IQKQDGGYLYTTTDIACAKYRYETLHADRILYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
            D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++ 
Sbjct: 337 IDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHM------FGMMLG 374



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 191/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLE-KVQNENASDMAL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+E+KK +DEDE F  RA   VV LQ  D   +  W  + D++    Q+ YDRL
Sbjct: 187 SDLEAFYREAKKHYDEDEEFAIRARGYVVKLQGGDEYCRTMWRKLVDITMAQNQQTYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   +  +V  L+++G                         + + K
Sbjct: 247 NVTLTKDSVMGESLYNDLLPSIVADLKQQGLAVESDGATVVYLDEYKNKEGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       I+Y  D  Q  H        +KAG + P    ++
Sbjct: 307 QDGGYLYTTTDIACAKYRYETLHADRILYYIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+L++LLDE + R+   +++KN   ++   EL +   A
Sbjct: 366 HHMFGMMLGKDSKPFKTRAGGTVRLTDLLDEAIERANTLIREKN--PDMPEDELKKVVSA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + A I+      
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAEIDESSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 108/191 (56%), Gaps = 11/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+   +++KN   ++   EL +   AV  G +KYADLS +R  DY+F +D ML   G
Sbjct: 397  AIERANTLIREKN--PDMPEDELKKVVSAVGIGAVKYADLSKSRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ASI + A I+   L     + PV L  ++E  LA  LL+  + +  V
Sbjct: 455  NTAPYMQYAYTRVASIFKRAEIDESSL-----TLPVILNEDREQTLATRLLQFEETITTV 509

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E     +   RL LA  TAK +K+  
Sbjct: 510  AREGTPHVMCAYLYDLAGLFSCFYEHCQILNAESE----ELRQSRLKLALLTAKTLKQGL 565

Query: 1109 DILNIRTVHKM 1119
            + L I TV +M
Sbjct: 566  NTLGIETVERM 576



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQAILSEKVSQALIAA----GAPADSEAHIRQSAKAQFGDYQANGVMAAAKKVG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ + +++        +L  +  K+E A PGF+N+FL + +    ++  + + 
Sbjct: 53  -MPPRQLAEKVVNLL--------NLQGIASKVEIAGPGFINIFLDKAWIAANIETALKDE 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             GV P    K   ++VD+S+PN+A++
Sbjct: 104 KLGVTPA---KPQTIVVDYSAPNVAKQ 127


>gi|423115035|ref|ZP_17102726.1| arginyl-tRNA synthetase [Klebsiella oxytoca 10-5245]
 gi|376383910|gb|EHS96637.1| arginyl-tRNA synthetase [Klebsiella oxytoca 10-5245]
          Length = 577

 Score =  236 bits (602), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 147/393 (37%), Positives = 212/393 (53%), Gaps = 49/393 (12%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L+ + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLSGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII----VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N+FL   +  E +   +    +   QPP       V+VD+S+PN+AKEMHVGHLRSTI
Sbjct: 82  FINIFLDPAFLAENVSSALKSERLGVAQPPAQT----VVVDYSAPNVAKEMHVGHLRSTI 137

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+
Sbjct: 138 IGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREA 196

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---R 475
           KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT     
Sbjct: 197 KKYYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYNRLNVTLTRDDVM 256

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTY 527
           GES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y
Sbjct: 257 GESLYNPMLPGIVADLKDKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLY 313

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +
Sbjct: 314 TTTDIACAKYRYENLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEH 366

Query: 588 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           H+      FGM++      F      +  +ADL
Sbjct: 367 HM------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 186/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKYYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKDKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYENLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDESLERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADID 477



 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 105/190 (55%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   GN
Sbjct: 398  LERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGN 455

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA Y+ YAYTR+ S+ R A I+   L  A    PV +  ++E  LA  LL+  + L +V 
Sbjct: 456  TAPYMQYAYTRVLSVFRKADIDESALVAA----PVVITEDREAQLAARLLQFEETLTVVA 511

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
            R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   D
Sbjct: 512  REGTPHVMCSYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGLD 567

Query: 1110 ILNIRTVHKM 1119
             L I TV +M
Sbjct: 568  TLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 21/110 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L+ + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLSGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII----VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E +   +    +   QPP       V+VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAENVSSALKSERLGVAQPPAQT----VVVDYSAPNVAKE 127


>gi|422923382|ref|ZP_16956536.1| arginyl-tRNA synthetase [Vibrio cholerae BJG-01]
 gi|341644121|gb|EGS68362.1| arginyl-tRNA synthetase [Vibrio cholerae BJG-01]
          Length = 577

 Score =  236 bits (602), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E   ++   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 322 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PELSAEEKANIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 478



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 577



 Score = 44.7 bits (104), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|283785614|ref|YP_003365479.1| arginyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282949068|emb|CBG88673.1| arginyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 577

 Score =  236 bits (601), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 148/389 (38%), Positives = 211/389 (54%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E ++  + +      + +K  V+VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLAENVQQALNSERLGVAIPEKQTVVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+KK +
Sbjct: 142 AVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 189/347 (54%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R +G++
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKSGLD 477



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R +G++   L  A    PV L  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKSGLDESALAAA----PVILREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + +     V   RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAEND----EVRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +      + +K  V+VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAENVQQALNSERLGVAIPEKQTVVVDYSAPNVAKE 127


>gi|385871600|gb|AFI90120.1| Arginyl-tRNA synthetase [Pectobacterium sp. SCC3193]
          Length = 576

 Score =  236 bits (601), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 150/414 (36%), Positives = 225/414 (54%), Gaps = 57/414 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++        +L  + +K E+A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V+P T      +++D+S+PN+AKEMHVGHLRSTIIGD  +R L +LGHDV+R N
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKEMHVGHLRSTIIGDAAARTLAFLGHDVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNESANEMDLSDLEAFYREAKKHYDEDADFAERARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  Y+RLNVTLT++   GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRQMWRKLVDITMTQNQINYERLNVTLTKQDVMGESLYNNMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLNADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +Y  D  Q  H  L++  TI+     R   Y+  D V L H       FGM++ 
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVSLEH-----HMFGMMLG 374



 Score =  232 bits (592), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 144/361 (39%), Positives = 194/361 (53%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R L +LGHDV+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTLAFLGHDVIRANHVGDWGTQFGMLIAYLE-KMQNESANEMDL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+E+KK +DED  F +RA   VV LQ  D   ++ W  + D++    Q  Y+RL
Sbjct: 187 SDLEAFYREAKKHYDEDADFAERARGYVVKLQGGDEYCRQMWRKLVDITMTQNQINYERL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT++   GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTKQDVMGESLYNNMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLNADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KLSELLDE   R+L  + DKN   E    EL+   + 
Sbjct: 366 HHMFGMMLGKDGKPFKTRAGGTIKLSELLDEAYNRALKLIADKNPQME--SDELAALAKV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V+ G IKYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI + AGI  +   +
Sbjct: 424 VSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGIQEDTLTQ 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  143 bits (361), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 110/188 (58%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  + DKN   E    EL+   + V+ G IKYADLS +R  DYVF +D ML   GNTA
Sbjct: 400  RALKLIADKNPQME--SDELAALAKVVSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI + AGI  + L     + P++L  E+EFALA  LL+  + +  V R+
Sbjct: 458  PYMQYAYTRVASIFKRAGIQEDTL-----TQPITLSDEREFALATRLLQFEETITSVARE 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  + +     V   RL LA  TAK +K+  D L
Sbjct: 513  GTPHVMCSYLYDLAGLFSGFYEHCPILNAETD----DVRQSRLRLALLTAKTLKQGLDTL 568

Query: 1112 NIRTVHKM 1119
             I TV KM
Sbjct: 569  GIETVEKM 576



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++        +L  + +K E A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V+P T      +++D+S+PN+A++
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKE 127


>gi|261821364|ref|YP_003259470.1| arginyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261605377|gb|ACX87863.1| arginyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 576

 Score =  236 bits (601), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 150/414 (36%), Positives = 225/414 (54%), Gaps = 57/414 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++        +L  + +K E+A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V+P T      +++D+S+PN+AKEMHVGHLRSTIIGD  +R L +LGHDV+R N
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKEMHVGHLRSTIIGDAAARTLAFLGHDVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNESANEMDLSDLEAFYREAKKHYDEDADFAERARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  Y+RLNVTLT++   GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRQMWRKLVDITMTQNQINYERLNVTLTKQDVMGESLYNNMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLNADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +Y  D  Q  H  L++  TI+     R   Y+  D V L H       FGM++ 
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVSLEH-----HMFGMMLG 374



 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/361 (39%), Positives = 194/361 (53%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R L +LGHDV+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTLAFLGHDVIRANHVGDWGTQFGMLIAYLE-KMQNESANEMDL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+E+KK +DED  F +RA   VV LQ  D   ++ W  + D++    Q  Y+RL
Sbjct: 187 SDLEAFYREAKKHYDEDADFAERARGYVVKLQGGDEYCRQMWRKLVDITMTQNQINYERL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT++   GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTKQDVMGESLYNNMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLNADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KLSELLDE   R+L  + DKN   E    EL+   + 
Sbjct: 366 HHMFGMMLGKDGKPFKTRAGGTIKLSELLDEAYDRALKLIADKNPQME--SDELAALAKV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V+ G IKYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI + AGI  +   +
Sbjct: 424 VSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGIQEDTLTQ 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  143 bits (361), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 110/188 (58%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  + DKN   E    EL+   + V+ G IKYADLS +R  DYVF +D ML   GNTA
Sbjct: 400  RALKLIADKNPQME--SDELAALAKVVSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI + AGI  + L     + P++L  E+EFALA  LL+  + +  V R+
Sbjct: 458  PYMQYAYTRVASIFKRAGIQEDTL-----TQPITLSDEREFALATRLLQFEETITSVARE 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  + +     V   RL LA  TAK +K+  D L
Sbjct: 513  GTPHVMCSYLYDLAGLFSGFYEHCPILNAETD----DVRQSRLRLALLTAKTLKQGLDTL 568

Query: 1112 NIRTVHKM 1119
             I TV KM
Sbjct: 569  GIETVEKM 576



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++        +L  + +K E A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V+P T      +++D+S+PN+A++
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKE 127


>gi|417821417|ref|ZP_12468031.1| arginyl-tRNA synthetase [Vibrio cholerae HE39]
 gi|419830538|ref|ZP_14354023.1| arginine--tRNA ligase [Vibrio cholerae HC-1A2]
 gi|419834219|ref|ZP_14357674.1| arginine--tRNA ligase [Vibrio cholerae HC-61A2]
 gi|422910924|ref|ZP_16945552.1| arginyl-tRNA synthetase [Vibrio cholerae HE-09]
 gi|422917923|ref|ZP_16952241.1| arginyl-tRNA synthetase [Vibrio cholerae HC-02A1]
 gi|423822825|ref|ZP_17716835.1| arginine--tRNA ligase [Vibrio cholerae HC-55C2]
 gi|423856790|ref|ZP_17720642.1| arginine--tRNA ligase [Vibrio cholerae HC-59A1]
 gi|423883093|ref|ZP_17724230.1| arginine--tRNA ligase [Vibrio cholerae HC-60A1]
 gi|423956582|ref|ZP_17735136.1| arginine--tRNA ligase [Vibrio cholerae HE-40]
 gi|423985370|ref|ZP_17738687.1| arginine--tRNA ligase [Vibrio cholerae HE-46]
 gi|423998351|ref|ZP_17741603.1| arginine--tRNA ligase [Vibrio cholerae HC-02C1]
 gi|424017244|ref|ZP_17757073.1| arginine--tRNA ligase [Vibrio cholerae HC-55B2]
 gi|424020169|ref|ZP_17759955.1| arginine--tRNA ligase [Vibrio cholerae HC-59B1]
 gi|424591790|ref|ZP_18031215.1| arginyl-tRNA synthetase [Vibrio cholerae CP1037(10)]
 gi|424625544|ref|ZP_18064005.1| arginyl-tRNA synthetase [Vibrio cholerae HC-50A1]
 gi|424630026|ref|ZP_18068313.1| arginyl-tRNA synthetase [Vibrio cholerae HC-51A1]
 gi|424634074|ref|ZP_18072174.1| arginyl-tRNA synthetase [Vibrio cholerae HC-52A1]
 gi|424637151|ref|ZP_18075159.1| arginyl-tRNA synthetase [Vibrio cholerae HC-55A1]
 gi|424641061|ref|ZP_18078944.1| arginyl-tRNA synthetase [Vibrio cholerae HC-56A1]
 gi|424649128|ref|ZP_18086791.1| arginyl-tRNA synthetase [Vibrio cholerae HC-57A1]
 gi|443528045|ref|ZP_21094093.1| arginyl-tRNA synthetase [Vibrio cholerae HC-78A1]
 gi|340039048|gb|EGR00023.1| arginyl-tRNA synthetase [Vibrio cholerae HE39]
 gi|341632798|gb|EGS57655.1| arginyl-tRNA synthetase [Vibrio cholerae HE-09]
 gi|341636805|gb|EGS61499.1| arginyl-tRNA synthetase [Vibrio cholerae HC-02A1]
 gi|408011899|gb|EKG49698.1| arginyl-tRNA synthetase [Vibrio cholerae HC-50A1]
 gi|408017993|gb|EKG55465.1| arginyl-tRNA synthetase [Vibrio cholerae HC-52A1]
 gi|408023207|gb|EKG60386.1| arginyl-tRNA synthetase [Vibrio cholerae HC-56A1]
 gi|408023700|gb|EKG60859.1| arginyl-tRNA synthetase [Vibrio cholerae HC-55A1]
 gi|408030599|gb|EKG67253.1| arginyl-tRNA synthetase [Vibrio cholerae CP1037(10)]
 gi|408032401|gb|EKG68986.1| arginyl-tRNA synthetase [Vibrio cholerae HC-57A1]
 gi|408054814|gb|EKG89773.1| arginyl-tRNA synthetase [Vibrio cholerae HC-51A1]
 gi|408620311|gb|EKK93323.1| arginine--tRNA ligase [Vibrio cholerae HC-1A2]
 gi|408634801|gb|EKL07036.1| arginine--tRNA ligase [Vibrio cholerae HC-55C2]
 gi|408640582|gb|EKL12371.1| arginine--tRNA ligase [Vibrio cholerae HC-59A1]
 gi|408641217|gb|EKL12998.1| arginine--tRNA ligase [Vibrio cholerae HC-60A1]
 gi|408649041|gb|EKL20358.1| arginine--tRNA ligase [Vibrio cholerae HC-61A2]
 gi|408657497|gb|EKL28577.1| arginine--tRNA ligase [Vibrio cholerae HE-40]
 gi|408663974|gb|EKL34819.1| arginine--tRNA ligase [Vibrio cholerae HE-46]
 gi|408852706|gb|EKL92528.1| arginine--tRNA ligase [Vibrio cholerae HC-02C1]
 gi|408860035|gb|EKL99689.1| arginine--tRNA ligase [Vibrio cholerae HC-55B2]
 gi|408867263|gb|EKM06625.1| arginine--tRNA ligase [Vibrio cholerae HC-59B1]
 gi|443453561|gb|ELT17380.1| arginyl-tRNA synthetase [Vibrio cholerae HC-78A1]
          Length = 577

 Score =  236 bits (601), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 322 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKANIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 478



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 577



 Score = 44.7 bits (104), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|192359863|ref|YP_001982872.1| arginyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|238692459|sp|B3PKE3.1|SYR_CELJU RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|190686028|gb|ACE83706.1| arginyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 579

 Score =  236 bits (601), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 154/403 (38%), Positives = 219/403 (54%), Gaps = 37/403 (9%)

Query: 205 MSVRDYLSD-VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++RD L+  V         P   D  A +A   +     FGD+Q N AM   K      
Sbjct: 1   MNIRDLLNQRVLAAMATCGVP--ADLPALIAPGKKA---GFGDYQANGAMGAAKAMG--- 52

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
              NP D+A  I + +         L  + DK+E+A PGF+N++L   + G+QI     +
Sbjct: 53  --TNPRDLAGKIVAAL--------DLEGIADKLEIAGPGFINIYLKPAWLGKQIALAQTD 102

Query: 324 G-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
             +  P       V++D+S PN+AKEMHVGHLRSTIIGD+++RLLE+LGH V+R NHVGD
Sbjct: 103 ARLAVPQAEHAQTVVIDYSGPNLAKEMHVGHLRSTIIGDSLARLLEFLGHQVIRQNHVGD 162

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           WGTQFGMLIA L+++       +  + DL+ FY+++KK FD+D  F  +A   VV LQ  
Sbjct: 163 WGTQFGMLIAELEEQLGAKGDAALELKDLEVFYQQAKKHFDDDAAFADKARDYVVRLQGG 222

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLEL 499
           D    K W+   D+S     +IY +LNVTLT+   RGESFY   +  LV  L+ +GL   
Sbjct: 223 DAQMLKLWQQFKDISLHHSSEIYQQLNVTLTDADVRGESFYNDDLAPLVKALQDQGLAVE 282

Query: 500 DDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLG 554
            +G ++++      +D    P+ I K  GGF Y T+DLAA+R R+    A  I+Y  D  
Sbjct: 283 SEGAQVVFLPELADKDGNPSPVIIQKQGGGFLYATTDLAALRYRVNTLNAKRIMYFIDAR 342

Query: 555 QGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
           Q +H + +        TISR   ++  D V L H+  +GT  G
Sbjct: 343 QSLHMQQVF-------TISRKAGFV-SDAVSLEHLA-FGTMMG 376



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 198/369 (53%), Gaps = 57/369 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD+++RLLE+LGH V+R NHVGDWGTQFGMLIA L+++       +  +
Sbjct: 133 HLR----STIIGDSLARLLEFLGHQVIRQNHVGDWGTQFGMLIAELEEQLGAKGDAALEL 188

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
            DL+ FY+++KK FD+D  F  +A   VV LQ  D    K W+   D+S     +IY +L
Sbjct: 189 KDLEVFYQQAKKHFDDDAAFADKARDYVVRLQGGDAQMLKLWQQFKDISLHHSSEIYQQL 248

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLE---------------------KKGNLS--LTKK 711
           NVTLT+   RGESFY   +  LV  L+                     K GN S  + +K
Sbjct: 249 NVTLTDADVRGESFYNDDLAPLVKALQDQGLAVESEGAQVVFLPELADKDGNPSPVIIQK 308

Query: 712 LG------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
            G                        I+Y  D  Q +H + +   ++KAG ++ +   ++
Sbjct: 309 QGGGFLYATTDLAALRYRVNTLNAKRIMYFIDARQSLHMQQVFTISRKAGFVS-DAVSLE 367

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
            + FG ++G D K FKTR+G TVKL+ELL E + R+   + +KN   EL   +++E  + 
Sbjct: 368 HLAFGTMMGSDGKPFKTRTGGTVKLAELLSEAVDRAASVVSEKN--PELAGEDIAEIARK 425

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADL   R  DYVFS++ ML   GNTA YL YAYTR+ SI R AG+  E    
Sbjct: 426 VGIGAVKYADLCKTRTNDYVFSWESMLSFEGNTAPYLQYAYTRVQSIFRKAGVAPETLGS 485

Query: 868 PDPSQSEVE 876
           P    SE E
Sbjct: 486 PILLGSEQE 494



 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 104/188 (55%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   + +KN   EL   +++E  + V  G +KYADL   R  DYVFS++ ML   GNTA
Sbjct: 402  RAASVVSEKN--PELAGEDIAEIARKVGIGAVKYADLCKTRTNDYVFSWESMLSFEGNTA 459

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YL YAYTR+ SI R AG+  E L      +P+ L  E+E ALA  LL+ ++VL  + R+
Sbjct: 460  PYLQYAYTRVQSIFRKAGVAPETL-----GSPILLGSEQEKALAIKLLQFSEVLDQMARE 514

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YLYDI++ +  FY+ C  ++   EG    V   RL L    A+ + +   +L
Sbjct: 515  AMPHLLCTYLYDIASLYMSFYEACPILK---EGVDAEVRDSRLRLCHLVARTIAQGLGLL 571

Query: 1112 NIRTVHKM 1119
             I  + +M
Sbjct: 572  GIEVMERM 579



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 20/146 (13%)

Query: 9   MSVRDYLSD-VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++RD L+  V         P   D  A +A   +     FGD+Q N AM   K      
Sbjct: 1   MNIRDLLNQRVLAAMATCGVP--ADLPALIAPGKKA---GFGDYQANGAMGAAKAMG--- 52

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
              NP D+A  I + +         L  + DK+E A PGF+N++L   + G+Q+     +
Sbjct: 53  --TNPRDLAGKIVAAL--------DLEGIADKLEIAGPGFINIYLKPAWLGKQIALAQTD 102

Query: 128 G-VQPPTLNKKLRVLVDFSSPNIARK 152
             +  P       V++D+S PN+A++
Sbjct: 103 ARLAVPQAEHAQTVVIDYSGPNLAKE 128


>gi|429885804|ref|ZP_19367379.1| Arginyl-tRNA synthetase [Vibrio cholerae PS15]
 gi|429227322|gb|EKY33353.1| Arginyl-tRNA synthetase [Vibrio cholerae PS15]
          Length = 592

 Score =  236 bits (601), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 50  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 96

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 97  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 156

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 157 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 216

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 217 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 276

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 277 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 336

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 337 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 384

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 385 -FGMMLGKDGRPFKTRAGGTVRLADL 409



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 150 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 209

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 210 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 269

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 270 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 329

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 330 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 388

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 389 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PELSAEEKANIANTVAMAAVK 446

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 447 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 493



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 422  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 481

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 482  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 536

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 537  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 592



 Score = 44.3 bits (103), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 50  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 96

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 97  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE 142


>gi|153213687|ref|ZP_01948939.1| arginyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|153801962|ref|ZP_01956548.1| arginyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|124115748|gb|EAY34568.1| arginyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124122476|gb|EAY41219.1| arginyl-tRNA synthetase [Vibrio cholerae MZO-3]
          Length = 599

 Score =  236 bits (601), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 163

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 164 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 223

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 224 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 283

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E   ++   PM ++  K DGGF Y T+D+A 
Sbjct: 284 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 343

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 344 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 391

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 392 -FGMMLGKDGRPFKTRAGGTVRLADL 416



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 157 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 216

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 217 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 276

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 277 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 336

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 337 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 395

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 396 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--LELSAEEKANIANTVAMAAVK 453

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 454 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 500



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 429  ESKNLELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 488

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 489  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 543

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 544  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 599



 Score = 44.3 bits (103), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE--MHVGHLRSTI 159


>gi|152978766|ref|YP_001344395.1| arginyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|171704277|sp|A6VNB3.1|SYR_ACTSZ RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|150840489|gb|ABR74460.1| arginyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 575

 Score =  236 bits (601), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 138/367 (37%), Positives = 215/367 (58%), Gaps = 32/367 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+   HA+  A    G +  +  +  +    +FGD+Q N  M   K       
Sbjct: 1   MNIQQLLSEKIRHAMIAA----GAQQPAEPAVRQSGKPQFGDYQANGIMGAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR---VYAGEQIKDII 321
             NP + AQ +          N +L  + +K+E+A PGF+N+FLS+   V   +++   +
Sbjct: 53  -LNPREFAQKVLD--------NLNLDGIAEKLEIAGPGFINIFLSKNWLVCHADEMLSAV 103

Query: 322 VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G++     K   ++VD+SSPN+AKEMHVGHLRSTIIGD + R LE+LG+ V+R NHVG
Sbjct: 104 NFGIKTA---KPQTIVVDYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNHVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +    +  ++DL+AFY+ +K+ +D DE F ++A   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMENENASAMQLSDLEAFYRAAKEHYDNDEAFAEKARNYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W+ + D++ R  Q+ YDRLNVTLTE+   GES Y   + ++V  L+K+GL  
Sbjct: 220 GDEYCRIMWKKLVDITMRHNQENYDRLNVTLTEKDVMGESLYNPMLPEIVADLKKQGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            DDG  +++ +   ++   PM ++  K DGG+ Y T+D+AA + R  +  AD ++  +D 
Sbjct: 280 EDDGALVVYLDEFKNKDGDPMGVIVQKKDGGYLYTTTDIAAAKYRCHKLHADRVLVFSDS 339

Query: 554 GQGVHFR 560
            Q  H +
Sbjct: 340 RQSQHMQ 346



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 139/346 (40%), Positives = 194/346 (56%), Gaps = 54/346 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +    +  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENENASAMQLSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+ +D DE F ++A   VV LQ  D   +  W+ + D++ R  Q+ YDRLNVTLTE+
Sbjct: 194 RAAKEHYDNDEAFAEKARNYVVKLQSGDEYCRIMWKKLVDITMRHNQENYDRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + ++V  L+K+G                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPEIVADLKKQGLAVEDDGALVVYLDEFKNKDGDPMGVIVQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++  +D  Q  H +      +KAG + P+   ++   FG++
Sbjct: 314 TTTDIAAAKYRCHKLHADRVLVFSDSRQSQHMQQAWLITRKAGYV-PDSFSLEHPFFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL +LLDE + R+ DKL    R+ +LT  E +   +AVA G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLKDLLDEAVERA-DKLI-AERNPDLTAEEKAAVVEAVAIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           Y+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   AGI
Sbjct: 431 YSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFARAGI 476



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 102/178 (57%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R+ +LT  E +   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RNPDLTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   AGI    L     +  + L  +KE  L   LL+  + L  V +D   H LC+YL
Sbjct: 468  RSIFARAGIEPNSL-----NDDIVLTDDKERVLVIKLLQFEEALNGVAKDGMPHILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY+ C  +  +AE  IK     RL LA   AK +K+  D+L I+TV KM
Sbjct: 523  YELAGMFSAFYEACPIL--NAERPIK---NSRLKLAALAAKTLKQGLDLLGIKTVEKM 575



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+   HA+  A    G +  +  +  +    +FGD+Q N  M   K       
Sbjct: 1   MNIQQLLSEKIRHAMIAA----GAQQPAEPAVRQSGKPQFGDYQANGIMGAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSR---VYAGEQMKDII 125
             NP + AQ +          N +L  + +K+E A PGF+N+FLS+   V   ++M   +
Sbjct: 53  -LNPREFAQKVLD--------NLNLDGIAEKLEIAGPGFINIFLSKNWLVCHADEMLSAV 103

Query: 126 VNGVQPPTLNKKLRVLVDFSSPNIARK 152
             G++     K   ++VD+SSPN+A++
Sbjct: 104 NFGIKTA---KPQTIVVDYSSPNVAKE 127


>gi|153826066|ref|ZP_01978733.1| arginyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|149740183|gb|EDM54336.1| arginyl-tRNA synthetase [Vibrio cholerae MZO-2]
          Length = 599

 Score =  236 bits (601), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 104 FINIFLSEEFLAAQAEAALADTRLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 163

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 164 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 223

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 224 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 283

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E   ++   PM ++  K DGGF Y T+D+A 
Sbjct: 284 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 343

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 344 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 391

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 392 -FGMMLGKDGRPFKTRAGGTVRLADL 416



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 157 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 216

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 217 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 276

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 277 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 336

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 337 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 395

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 396 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKANIANTVAMAAVK 453

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 454 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 500



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 429  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 488

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 489  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 543

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 544  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 599



 Score = 43.9 bits (102), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 104 FINIFLSEEFLAAQAEAALADTRLGVAQEAPKTIVADYSAPNVAKE--MHVGHLRSTI 159


>gi|262191347|ref|ZP_06049538.1| arginyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
 gi|262032766|gb|EEY51313.1| arginyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
          Length = 592

 Score =  236 bits (601), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 50  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 96

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 97  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 156

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 157 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 216

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 217 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 276

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 277 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 336

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 337 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 384

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 385 -FGMMLGKDGRPFKTRAGGTVRLADL 409



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 150 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 209

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 210 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 269

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 270 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 329

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 330 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 388

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 389 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKANIANTVAMAAVK 446

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 447 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 493



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 422  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 481

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 482  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 536

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 537  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 592



 Score = 44.3 bits (103), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 50  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 96

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 97  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE 142


>gi|333909590|ref|YP_004483176.1| arginyl-tRNA synthetase [Marinomonas posidonica IVIA-Po-181]
 gi|333479596|gb|AEF56257.1| Arginyl-tRNA synthetase [Marinomonas posidonica IVIA-Po-181]
          Length = 577

 Score =  236 bits (601), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 147/429 (34%), Positives = 236/429 (55%), Gaps = 38/429 (8%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  +    +Q A    G    + A T +    +FGD+Q N  M + K  K      NP +
Sbjct: 3   IQTLLNQRIQAAMVAAGAPETAPALTRQSAKVQFGDYQANGIMGVAKSLK-----MNPRE 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG-VQPPT 329
           +AQ +   +         L+ + +K+E+A PGF+N+FL   + G+++  +  +  +  P+
Sbjct: 58  LAQKVVDGL--------DLSDIAEKVEIAGPGFINIFLKNAWLGKELVALRQSERLDVPS 109

Query: 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
           +     V+VD+SSPN+AKEMHVGHLRST+IGD + R LE+LGH VVR NHVGDWGTQFGM
Sbjct: 110 VAAPETVVVDYSSPNLAKEMHVGHLRSTVIGDAVVRTLEFLGHRVVRQNHVGDWGTQFGM 169

Query: 390 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA 449
           L+A+++    +    S  ++DL+ FY+ +K  FD+D  F  RA + VVALQ  D D    
Sbjct: 170 LLAYMERLRSEKAEISMALSDLETFYRTAKTCFDDDAGFADRARELVVALQSGDKDCLAL 229

Query: 450 WEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVPYLEKKGLLELDDGRKIM 506
           W+   D+S    ++ Y  L V+L  +    ES Y   ++ +V  L ++ LL+ D G + +
Sbjct: 230 WDEFIDISLTHCEETYKMLGVSLERQHVMPESAYNDDLQNVVNELTEQNLLKEDQGAQCV 289

Query: 507 WGED----RGSI-PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           + E+     G I P+ + K+ GGF Y T+DLAA+R R    +A+ ++Y  D  Q +HF+ 
Sbjct: 290 FLEEFANKEGEITPIIVQKTGGGFLYSTTDLAAVRFRQHTLEANRVLYFVDARQSLHFQQ 349

Query: 562 LEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 621
           +        T+SR   ++  +  +L H+  +GT  G       D  P + T+S  +A L 
Sbjct: 350 I-------FTLSRKAGFVKPE-TQLEHM-PFGTVMG------SDGKP-FKTRSGGVAKLS 393

Query: 622 AFYKESKKR 630
           +  +E+++R
Sbjct: 394 SLLEEAQER 402



 Score =  210 bits (534), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 182/342 (53%), Gaps = 53/342 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD + R LE+LGH VVR NHVGDWGTQFGML+A+++    +    S  ++DL+ FY
Sbjct: 136 STVIGDAVVRTLEFLGHRVVRQNHVGDWGTQFGMLLAYMERLRSEKAEISMALSDLETFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K  FD+D  F  RA + VVALQ  D D    W+   D+S    ++ Y  L V+L  +
Sbjct: 196 RTAKTCFDDDAGFADRARELVVALQSGDKDCLALWDEFIDISLTHCEETYKMLGVSLERQ 255

Query: 685 G---ESFYQKHMEQLV---------------------PYLEKKGNLS--LTKKLG----- 713
               ES Y   ++ +V                      +  K+G ++  + +K G     
Sbjct: 256 HVMPESAYNDDLQNVVNELTEQNLLKEDQGAQCVFLEEFANKEGEITPIIVQKTGGGFLY 315

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+ +   ++KAG + P +T+++ + FG V
Sbjct: 316 STTDLAAVRFRQHTLEANRVLYFVDARQSLHFQQIFTLSRKAGFVKP-ETQLEHMPFGTV 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G D K FKTRSG   KLS LL+E   R+   +  KN   +++  EL    + V    +K
Sbjct: 375 MGSDGKPFKTRSGGVAKLSSLLEEAQERAYQLVSSKN--PDMSEEELRNISRVVGIASVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           YADLS NR  DYVF++D ML   GNTA YLLYAY+R+ASI +
Sbjct: 433 YADLSKNRTSDYVFNWDTMLSFEGNTAPYLLYAYSRVASIVK 474



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 101/179 (56%), Gaps = 10/179 (5%)

Query: 941  NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
            +++ +++  EL    + V    +KYADLS NR  DYVF++D ML   GNTA YLLYAY+R
Sbjct: 409  SKNPDMSEEELRNISRVVGIASVKYADLSKNRTSDYVFNWDTMLSFEGNTAPYLLYAYSR 468

Query: 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
            +ASI + +     ++ VA+ +  + +E  +E ALA  L +  + +  V  D   H LC Y
Sbjct: 469  VASIVKRS-----EMDVASLTGEIKVEASQERALAMKLCQFEEAIQQVANDGMPHFLCAY 523

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            LY+++  F  FY+ C  +  +AE  +K     RL LA  TA  ++    +L I T+ +M
Sbjct: 524  LYELAGTFMTFYEACPIL--NAEEDVK---NSRLQLALNTASTLQLGLSLLGIETLERM 577



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 14/139 (10%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  +    +Q A    G    + A T +    +FGD+Q N  M + K  K      NP +
Sbjct: 3   IQTLLNQRIQAAMVAAGAPETAPALTRQSAKVQFGDYQANGIMGVAKSLK-----MNPRE 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG-VQPPT 133
           +AQ +   +         L+ + +K+E A PGF+N+FL   + G+++  +  +  +  P+
Sbjct: 58  LAQKVVDGL--------DLSDIAEKVEIAGPGFINIFLKNAWLGKELVALRQSERLDVPS 109

Query: 134 LNKKLRVLVDFSSPNIARK 152
           +     V+VD+SSPN+A++
Sbjct: 110 VAAPETVVVDYSSPNLAKE 128


>gi|424660587|ref|ZP_18097834.1| arginyl-tRNA synthetase [Vibrio cholerae HE-16]
 gi|408050317|gb|EKG85482.1| arginyl-tRNA synthetase [Vibrio cholerae HE-16]
          Length = 577

 Score =  236 bits (601), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAAQAEAALADARLGVVQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 322 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 185/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL   E +     VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELPAEEKANIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 478



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELPAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 577



 Score = 44.3 bits (103), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAAQAEAALADARLGVVQEAPKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|229522032|ref|ZP_04411449.1| arginyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|254226080|ref|ZP_04919678.1| arginyl-tRNA synthetase [Vibrio cholerae V51]
 gi|125621392|gb|EAZ49728.1| arginyl-tRNA synthetase [Vibrio cholerae V51]
 gi|229340957|gb|EEO05962.1| arginyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
          Length = 599

 Score =  236 bits (601), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 163

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 164 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 223

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 224 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 283

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E   ++   PM ++  K DGGF Y T+D+A 
Sbjct: 284 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 343

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 344 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 391

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 392 -FGMMLGKDGRPFKTRAGGTVRLADL 416



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 157 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 216

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 217 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 276

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 277 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 336

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 337 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 395

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 396 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKANIANTVAMAAVK 453

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 454 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 500



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 429  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 488

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 489  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 543

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 544  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 599



 Score = 44.3 bits (103), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE--MHVGHLRSTI 159


>gi|384425054|ref|YP_005634412.1| arginyl-tRNA synthetase [Vibrio cholerae LMA3984-4]
 gi|327484607|gb|AEA79014.1| Arginyl-tRNA synthetase [Vibrio cholerae LMA3984-4]
          Length = 592

 Score =  236 bits (601), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 50  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 96

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 97  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 156

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 157 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 216

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 217 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 276

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 277 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 336

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 337 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 384

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 385 -FGMMLGKDGRPFKTRAGGTVRLADL 409



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 150 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 209

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 210 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 269

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 270 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 329

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 330 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 388

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 389 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKAAIANTVAMAAVK 446

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 447 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 493



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 422  ESKNPELSAEEKAAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 481

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 482  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 536

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 537  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 592



 Score = 44.3 bits (103), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 50  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 96

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 97  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE 142


>gi|83273903|ref|XP_729602.1| arginyl-tRNA synthetase [Plasmodium yoelii yoelii 17XNL]
 gi|23487879|gb|EAA21167.1| arginyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
          Length = 1643

 Score =  236 bits (601), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 159/487 (32%), Positives = 252/487 (51%), Gaps = 66/487 (13%)

Query: 214 VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 273
           +F  ++Q  FP + ++ A V   N     KFG FQCN+A+    I+K  G++ N F+ A 
Sbjct: 11  IFQSSIQKCFPTINEE-AVVTYAN----MKFGHFQCNNAI---NIYKKYGKELN-FENAH 61

Query: 274 SIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG-----VQPP 328
            ++  +   +  N     + D I  +  GF+ V +S+ Y  + +  +  N      V   
Sbjct: 62  KVSLSIIENINEN-----LFDDINASPQGFITVKISKDYIEKSLLKLYKNNKININVDMD 116

Query: 329 TLN-----KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
            +N     K   VL+DFSSPNIAKEMHVGHLRSTIIGD+I ++ E+L     R+NHVGDW
Sbjct: 117 EINDGNNAKYENVLIDFSSPNIAKEMHVGHLRSTIIGDSICKIFEFLKVKTHRVNHVGDW 176

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGM+I ++   +P+Y  + P +  L   Y+E+KK +D D+ F+ ++ +  + LQ  D
Sbjct: 177 GTQFGMIINYIITNYPNYKEEMPELKSLTLLYQEAKKCYDNDKDFEIKSKEYAIKLQEHD 236

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
            D +  W  IC+ S+++F  IY  L++ L   GESFY   +   +  L+ K LL  + G 
Sbjct: 237 EDCRYIWTKICEASKKEFNNIYKILDIKLEYYGESFYIPKIPSTLEILKDKNLLT-NIGD 295

Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
            + +  ++ ++P+ + KS+GG+ YD++D+ A+  R++    D I+YVTD GQ  HF  L 
Sbjct: 296 ALCYKSEKYTVPLFLQKSNGGYGYDSTDITALYYRLKVLNVDSIIYVTDNGQLSHFETLF 355

Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 623
           E       + +  E++  D V+L HVG     FG+++     KF    T+S     L   
Sbjct: 356 E-------LCKQAEWVDDD-VKLIHVG-----FGLVLNTDNKKFK---TRSGTNIKLINL 399

Query: 624 YKESKKR-------------------FDEDEIFKKRAYQCVVALQRFD------PDYKKA 658
             E  +R                   FD  +I K     CV A++ FD       DYK +
Sbjct: 400 INEGTERAKKDLMERIKLKSDEEKSYFDGIDIDKLSQDICVSAIKYFDIKQHRNTDYKFS 459

Query: 659 WEMICDV 665
           ++ +  +
Sbjct: 460 YDNMLSI 466



 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/347 (35%), Positives = 182/347 (52%), Gaps = 48/347 (13%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+I ++ E+L     R+NHVGDWGTQFGM+I ++   +P+Y  + P +  L   Y
Sbjct: 149 STIIGDSICKIFEFLKVKTHRVNHVGDWGTQFGMIINYIITNYPNYKEEMPELKSLTLLY 208

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +D D+ F+ ++ +  + LQ  D D +  W  IC+ S+++F  IY  L++ L   
Sbjct: 209 QEAKKCYDNDKDFEIKSKEYAIKLQEHDEDCRYIWTKICEASKKEFNNIYKILDIKLEYY 268

Query: 685 GESFY-------------------------QKHMEQLVPYLEKKGN-------------- 705
           GESFY                          K  +  VP   +K N              
Sbjct: 269 GESFYIPKIPSTLEILKDKNLLTNIGDALCYKSEKYTVPLFLQKSNGGYGYDSTDITALY 328

Query: 706 --LSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
             L +     I+YVTD GQ  HF  L E  K+A  ++ +  ++  VGFG+VL  D KKFK
Sbjct: 329 YRLKVLNVDSIIYVTDNGQLSHFETLFELCKQAEWVDDD-VKLIHVGFGLVLNTDNKKFK 387

Query: 764 TRSGDTVKLSELLDEGLRRSLD------KLKDKNRHTELTPTELSEAQQAVAYGCIKYAD 817
           TRSG  +KL  L++EG  R+        KLK     +     ++ +  Q +    IKY D
Sbjct: 388 TRSGTNIKLINLINEGTERAKKDLMERIKLKSDEEKSYFDGIDIDKLSQDICVSAIKYFD 447

Query: 818 LSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           +  +RN DY FS+D ML  +GNT +Y++YAY+RI SI R + IN E+
Sbjct: 448 IKQHRNTDYKFSYDNMLSIKGNTGLYIIYAYSRICSIFRKSDINIEE 494



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 31/140 (22%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            KLK     +     ++ +  Q +    IKY D+  +RN DY FS+D ML  +GNT +Y++
Sbjct: 416  KLKSDEEKSYFDGIDIDKLSQDICVSAIKYFDIKQHRNTDYKFSYDNMLSIKGNTGLYII 475

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YAY+RI SI R + IN E+L       P                   D L L+      +
Sbjct: 476  YAYSRICSIFRKSDINIEEL------VP-------------------DELNLI------N 504

Query: 1056 HLCEYLYDISTAFSEFYDNC 1075
             L EY YD++T F+ FY+NC
Sbjct: 505  QLAEYTYDLTTTFTTFYENC 524



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 24/145 (16%)

Query: 18  VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 77
           +F  ++Q  FP + ++ A V   N     KFG FQCN+A+    I+K  G++ N F+ A 
Sbjct: 11  IFQSSIQKCFPTINEE-AVVTYAN----MKFGHFQCNNAI---NIYKKYGKELN-FENAH 61

Query: 78  SIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN-----GVQPP 132
            ++  +   +  N     + D I A+  GF+ V +S+ Y  + +  +  N      V   
Sbjct: 62  KVSLSIIENINEN-----LFDDINASPQGFITVKISKDYIEKSLLKLYKNNKININVDMD 116

Query: 133 TLN-----KKLRVLVDFSSPNIARK 152
            +N     K   VL+DFSSPNIA++
Sbjct: 117 EINDGNNAKYENVLIDFSSPNIAKE 141


>gi|229528909|ref|ZP_04418299.1| arginyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229332683|gb|EEN98169.1| arginyl-tRNA synthetase [Vibrio cholerae 12129(1)]
          Length = 591

 Score =  236 bits (601), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 49  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 95

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 96  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 155

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 156 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 215

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 216 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 275

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 276 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 335

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 336 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 383

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 384 -FGMMLGKDGRPFKTRAGGTVRLADL 408



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 149 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 208

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 209 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 268

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 269 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 328

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 329 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 387

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 388 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKAAIANTVAMAAVK 445

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 446 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 492



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 421  ESKNPELSAEEKAAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 480

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 481  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 535

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 536  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 591



 Score = 44.3 bits (103), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 49  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 95

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 96  FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE 141


>gi|152998130|ref|YP_001342965.1| arginyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|189083538|sp|A6W2V1.1|SYR_MARMS RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|150839054|gb|ABR73030.1| arginyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 577

 Score =  236 bits (601), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 149/434 (34%), Positives = 233/434 (53%), Gaps = 48/434 (11%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  +    +Q A    G    + A   +    +FGD+Q N  M   K  K      NP D
Sbjct: 3   IQTLLNQRIQAAMVAAGASDTAQALVRQSAKVQFGDYQANGIMGAAKALK-----MNPCD 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII------VNG 324
            AQ+    +         L+ + +K+E+A PGF+N+FL  V+  +++  +       VN 
Sbjct: 58  FAQATLDKL--------DLSDLAEKVEIAGPGFINIFLKNVWLSKELTQLRTSERLDVNP 109

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
           V  P       V+VD+SSPN+AKEMHVGHLRST+IGD + R LE+ GH VVR NHVGDWG
Sbjct: 110 VDAPE-----TVVVDYSSPNLAKEMHVGHLRSTVIGDAVVRTLEFFGHHVVRQNHVGDWG 164

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGML+A+++    +  T S  ++DL+ FY+ +K  FDEDE F  R+ + VVALQ  D 
Sbjct: 165 TQFGMLLAYMERLRSENATISMALSDLETFYRAAKTCFDEDEAFATRSRELVVALQSGDE 224

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVPYLEKKGLLELDD 501
           +    W+   ++S    ++ Y  L V+L  +    ES Y   +  +V  L+++GLL+  +
Sbjct: 225 ECLALWDEFINISLTHCEETYKMLGVSLERQHVMPESAYNDDLANVVNELKEQGLLQESN 284

Query: 502 GRKIMWGED----RGSI-PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G + ++ E+     G I P+ + K+ GGF Y T+DLAA+R R     A+ ++Y  D  Q 
Sbjct: 285 GAQCVFMEEFANKEGEITPIIVQKTGGGFLYATTDLAAVRFRQHTLNANRVLYFVDARQS 344

Query: 557 VHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 616
           +HF+ +        T+SR   ++  +  +L H+  +GT  G       D  P + T+S  
Sbjct: 345 LHFQQI-------FTLSRKAGFVKPE-TQLEHM-PFGTVMG------SDGKP-FKTRSGG 388

Query: 617 IADLQAFYKESKKR 630
           +A L +  +E+++R
Sbjct: 389 VAKLSSLLEEAQER 402



 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/347 (36%), Positives = 184/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD + R LE+ GH VVR NHVGDWGTQFGML+A+++    +  T S  ++DL+ FY
Sbjct: 136 STVIGDAVVRTLEFFGHHVVRQNHVGDWGTQFGMLLAYMERLRSENATISMALSDLETFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K  FDEDE F  R+ + VVALQ  D +    W+   ++S    ++ Y  L V+L  +
Sbjct: 196 RAAKTCFDEDEAFATRSRELVVALQSGDEECLALWDEFINISLTHCEETYKMLGVSLERQ 255

Query: 685 G---ESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
               ES Y   +  +V  L+++G L                        + +K G     
Sbjct: 256 HVMPESAYNDDLANVVNELKEQGLLQESNGAQCVFMEEFANKEGEITPIIVQKTGGGFLY 315

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+ +   ++KAG + P +T+++ + FG V
Sbjct: 316 ATTDLAAVRFRQHTLNANRVLYFVDARQSLHFQQIFTLSRKAGFVKP-ETQLEHMPFGTV 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G D K FKTRSG   KLS LL+E   R+   +  KN   E+   EL    + V    +K
Sbjct: 375 MGSDGKPFKTRSGGVAKLSSLLEEAQERAYQLVASKN--PEMDEEELRNIGRVVGIASVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF++D ML   GNTA YLLYAY+R+ASI + + I+
Sbjct: 433 YADLSKNRTSDYVFNWDSMLSFEGNTAPYLLYAYSRVASIVKRSEID 479



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 10/179 (5%)

Query: 941  NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
            +++ E+   EL    + V    +KYADLS NR  DYVF++D ML   GNTA YLLYAY+R
Sbjct: 409  SKNPEMDEEELRNIGRVVGIASVKYADLSKNRTSDYVFNWDSMLSFEGNTAPYLLYAYSR 468

Query: 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
            +ASI + + I+  +L     +  +S++  +E ALA  L +  + +  V  D   H LC Y
Sbjct: 469  VASIVKRSEIDVVNL-----TGEISIDEPQERALAVKLCQFEEAIQQVANDGMPHFLCAY 523

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            LYD++  F  FY+ C  +  +AE ++K  H+ RL LA  TA  +K    +L I T+ +M
Sbjct: 524  LYDLAGTFMTFYEACPIL--NAEDEVK--HS-RLQLALNTASTLKLGLSLLGIETLERM 577



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 24/144 (16%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  +    +Q A    G    + A   +    +FGD+Q N  M   K  K      NP D
Sbjct: 3   IQTLLNQRIQAAMVAAGASDTAQALVRQSAKVQFGDYQANGIMGAAKALK-----MNPCD 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII------VNG 128
            AQ+    +         L+ + +K+E A PGF+N+FL  V+  +++  +       VN 
Sbjct: 58  FAQATLDKL--------DLSDLAEKVEIAGPGFINIFLKNVWLSKELTQLRTSERLDVNP 109

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
           V  P       V+VD+SSPN+A++
Sbjct: 110 VDAPE-----TVVVDYSSPNLAKE 128


>gi|419837797|ref|ZP_14361235.1| arginine--tRNA ligase [Vibrio cholerae HC-46B1]
 gi|421344581|ref|ZP_15794984.1| arginyl-tRNA synthetase [Vibrio cholerae HC-43B1]
 gi|422308021|ref|ZP_16395174.1| arginine--tRNA ligase [Vibrio cholerae CP1035(8)]
 gi|423735751|ref|ZP_17708947.1| arginine--tRNA ligase [Vibrio cholerae HC-41B1]
 gi|424010089|ref|ZP_17753025.1| arginine--tRNA ligase [Vibrio cholerae HC-44C1]
 gi|395940661|gb|EJH51342.1| arginyl-tRNA synthetase [Vibrio cholerae HC-43B1]
 gi|408618690|gb|EKK91755.1| arginine--tRNA ligase [Vibrio cholerae CP1035(8)]
 gi|408629609|gb|EKL02290.1| arginine--tRNA ligase [Vibrio cholerae HC-41B1]
 gi|408856345|gb|EKL96040.1| arginine--tRNA ligase [Vibrio cholerae HC-46B1]
 gi|408863617|gb|EKM03094.1| arginine--tRNA ligase [Vibrio cholerae HC-44C1]
          Length = 577

 Score =  236 bits (601), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 152/392 (38%), Positives = 215/392 (54%), Gaps = 46/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIK----DIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FLS  +   Q +    D+ +   Q  P T      ++ D+S+PN+AKEMHVGHLRS
Sbjct: 82  FINIFLSEEFLAAQAEAALADVRLGVAQEAPKT------IVADYSAPNVAKEMHVGHLRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+
Sbjct: 136 TIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYR 195

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER- 475
           ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT   
Sbjct: 196 ESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTREN 255

Query: 476 --GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   + Q+V  L+ KGL   DDG ++++ E   ++   PM ++  K DGGF Y 
Sbjct: 256 VMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYT 315

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H
Sbjct: 316 TTDIACAKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHH 368

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 369 A------FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PELSAEEKTNIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 478



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELSAEEKTNIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 577



 Score = 43.9 bits (102), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 27/124 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 81

Query: 107 FVNVFLS----RVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+FLS       A   + D+ +   Q  P T      ++ D+S+PN+A++      HL
Sbjct: 82  FINIFLSEEFLAAQAEAALADVRLGVAQEAPKT------IVADYSAPNVAKE--MHVGHL 133

Query: 161 PSQI 164
            S I
Sbjct: 134 RSTI 137


>gi|339999715|ref|YP_004730598.1| arginyl-tRNA synthetase [Salmonella bongori NCTC 12419]
 gi|339513076|emb|CCC30820.1| arginyl-tRNA synthetase [Salmonella bongori NCTC 12419]
          Length = 577

 Score =  235 bits (600), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 145/389 (37%), Positives = 214/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   G+  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEHVQQALASDRLGISQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   G+  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEHVQQALASDRLGISQPT---RQTIVVDYSAPNVAKE 127


>gi|188533617|ref|YP_001907414.1| arginyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|238691998|sp|B2VJB6.1|SYR_ERWT9 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|188028659|emb|CAO96521.1| Arginyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 576

 Score =  235 bits (600), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 145/378 (38%), Positives = 215/378 (56%), Gaps = 40/378 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  +HA+ +A     D    V  + +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSHAM-IAVGAPADCEPQVRQSAKA---QFGDYQANGMMAVAKKMG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ +   +         L+ +  K+E+A PGF+N+FL++ +   QI  ++   
Sbjct: 53  -MPPRQLAEKVLEQL--------DLSGIAAKVEIAGPGFINIFLAQEWLSAQIDGVLTAP 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GV P        V++D+S+PN+AKEMHVGH+RSTIIGD  +R LE+LGH V+R NHVG
Sbjct: 104 KLGVAPVAPKT---VVIDYSAPNVAKEMHVGHVRSTIIGDAAARTLEFLGHKVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA L+ +  ++  ++  +ADL+AFY+E+K+ +DED  F +RA   VV LQ 
Sbjct: 161 DWGTQFGMLIAFLEKQQSEH-HEAIALADLEAFYREAKRTYDEDPAFAERARGYVVKLQG 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   +K W+ + DV+    Q IYDR+NVTLT     GES Y   +  +V  L+ KGL  
Sbjct: 220 GDEYCRKMWKQLVDVTMTQNQLIYDRMNVTLTRDDVMGESLYNDMLPGIVADLKAKGLAV 279

Query: 499 LDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
             +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E  KAD ++Y 
Sbjct: 280 ESEGATVVFLDEYKNKEGEPMGVI---IRKKDGGYLYTTTDIACAKYRYETLKADRVLYY 336

Query: 551 TDLGQGVHFRLLEESTII 568
            D  Q  H  L++  TI+
Sbjct: 337 IDSRQ--HQHLMQAWTIV 352



 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 192/349 (55%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  ++  ++  +ADL+AFY
Sbjct: 135 STIIGDAAARTLEFLGHKVIRANHVGDWGTQFGMLIAFLEKQQSEH-HEAIALADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K+ +DED  F +RA   VV LQ  D   +K W+ + DV+    Q IYDR+NVTLT  
Sbjct: 194 REAKRTYDEDPAFAERARGYVVKLQGGDEYCRKMWKQLVDVTMTQNQLIYDRMNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIRKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLKADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSIPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T+KLS+LLDE + R+   + +KN   ++   EL+     V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTIKLSDLLDEAVDRATKLVAEKN--PDMPADELNALANIVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI++E
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIDAE 479



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 102/178 (57%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL+     V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELNALANIVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AGI++E     A S    +  ++E ALA  LL+  + +  V RD   H +C YL
Sbjct: 468  LSVFRKAGIDAE-----AVSGVTRIVDDREAALAVRLLQFEETITQVARDGMPHVMCAYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  + E   ++    RL LA  TAK +K+  D L I TV +M
Sbjct: 523  YDLAGLFSGFYEHCPILNAEDEATKQS----RLRLALLTAKTLKQGLDTLGIETVERM 576



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  +HA+ +A     D    V  + +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSHAM-IAVGAPADCEPQVRQSAKA---QFGDYQANGMMAVAKKMG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ +   +         L+ +  K+E A PGF+N+FL++ +   Q+  ++   
Sbjct: 53  -MPPRQLAEKVLEQL--------DLSGIAAKVEIAGPGFINIFLAQEWLSAQIDGVLTAP 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             GV P        V++D+S+PN+A++
Sbjct: 104 KLGVAPVAPKT---VVIDYSAPNVAKE 127


>gi|375261583|ref|YP_005020753.1| arginyl-tRNA synthetase [Klebsiella oxytoca KCTC 1686]
 gi|397658691|ref|YP_006499393.1| arginyl-tRNA synthetase [Klebsiella oxytoca E718]
 gi|402840483|ref|ZP_10888947.1| arginine--tRNA ligase [Klebsiella sp. OBRC7]
 gi|365911061|gb|AEX06514.1| arginyl-tRNA synthetase [Klebsiella oxytoca KCTC 1686]
 gi|394346957|gb|AFN33078.1| Arginyl-tRNA synthetase [Klebsiella oxytoca E718]
 gi|402285700|gb|EJU34181.1| arginine--tRNA ligase [Klebsiella sp. OBRC7]
          Length = 577

 Score =  235 bits (600), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 149/392 (38%), Positives = 212/392 (54%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L+ + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLSGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E +   + +   GV  P       V+VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAENVSSALKSERLGVAQPQAQT---VVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYNRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYENLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 187/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYENLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADID 477



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L  A    PV +  E+E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDESALAAA----PVVITEEREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCSYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L+ + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLSGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E +   + +   GV  P       V+VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAENVSSALKSERLGVAQPQAQT---VVVDYSAPNVAKE 127


>gi|229513729|ref|ZP_04403191.1| arginyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229348910|gb|EEO13867.1| arginyl-tRNA synthetase [Vibrio cholerae TMA 21]
          Length = 599

 Score =  235 bits (600), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 163

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 164 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 223

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 224 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 283

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E   ++   PM ++  K DGGF Y T+D+A 
Sbjct: 284 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 343

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 344 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 391

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 392 -FGMMLGKDGRPFKTRAGGTVRLADL 416



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 157 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 216

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 217 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 276

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 277 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 336

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 337 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 395

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 396 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKTNIANTVAMAAVK 453

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 454 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 500



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 429  ESKNPELSAEEKTNIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 488

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 489  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 543

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 544  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 599



 Score = 44.3 bits (103), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE--MHVGHLRSTI 159


>gi|392553279|ref|ZP_10300416.1| arginyl-tRNA ligase [Pseudoalteromonas spongiae UST010723-006]
          Length = 580

 Score =  235 bits (600), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 143/362 (39%), Positives = 203/362 (56%), Gaps = 58/362 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD + R LE+ G  V R NHVGDWGTQFGMLIAHL+D     +  +S  
Sbjct: 133 HLR----STIIGDAVVRALEFRGDSVTRQNHVGDWGTQFGMLIAHLEDLLNQGVDLESVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD+++ F  +A   VV LQ  D   +K W++  D S +  +++Y +
Sbjct: 189 LADLETFYRDAKKRFDDEDGFADKARDYVVKLQGGDAHCEKLWKLFIDTSVKHSEEVYAK 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKG----------------------------- 704
           LNVTL     + ES Y   ++ ++  L++KG                             
Sbjct: 249 LNVTLKPEDIKAESAYNDALQGVITLLKEKGIAVEDQGAQVVFLDELANKDGEPSVFIVQ 308

Query: 705 -----------NLSL----TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRM 746
                      +L+     + KLG   I+   D  Q +HF  +E  A+KAG+L  ++T  
Sbjct: 309 KSGGGFLYATTDLAACDYRSNKLGADRILIFVDARQSLHFNQVELTARKAGLLR-DETTY 367

Query: 747 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ 806
           +F  FG ++GED K FKTR+G TVKL+ELL+E + R+ DKL +  R ++L+  E +E  +
Sbjct: 368 EFCPFGTMMGEDGKPFKTRTGGTVKLAELLEEAVSRATDKLAE--RESDLSAEERAEIAR 425

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
            V  G +KYADLS NR  DY+F++D ML   G TA YL YAYTR+ SI R AGI++    
Sbjct: 426 KVGIGAVKYADLSKNRTSDYIFNWDTMLSFEGATAPYLQYAYTRVRSIFRKAGIDAASLN 485

Query: 867 EP 868
            P
Sbjct: 486 AP 487



 Score =  219 bits (559), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 203/374 (54%), Gaps = 37/374 (9%)

Query: 205 MSVRDYLSDVFTHA-VQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++R  L +    A V    PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRQILVEKAVAAMVAAGLPE--DTNPAVTQSTRP---QFGDYQINGAMGAAKKLK--- 52

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
              NP ++AQ I          N  ++ +  + E+A PGF+N+ L      E + D + +
Sbjct: 53  --TNPRELAQKIID--------NLDVSDIASQTEIAGPGFINIHLKP----EFLADTLSS 98

Query: 324 GVQPPTLN-----KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
             Q   L          V+VD+SSPN+AKEMHVGHLRSTIIGD + R LE+ G  V R N
Sbjct: 99  ANQDEKLGVAEHASAQNVVVDYSSPNLAKEMHVGHLRSTIIGDAVVRALEFRGDSVTRQN 158

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           HVGDWGTQFGMLIAHL+D     +  +S  +ADL+ FY+++KKRFD+++ F  +A   VV
Sbjct: 159 HVGDWGTQFGMLIAHLEDLLNQGVDLESVALADLETFYRDAKKRFDDEDGFADKARDYVV 218

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKK 494
            LQ  D   +K W++  D S +  +++Y +LNVTL     + ES Y   ++ ++  L++K
Sbjct: 219 KLQGGDAHCEKLWKLFIDTSVKHSEEVYAKLNVTLKPEDIKAESAYNDALQGVITLLKEK 278

Query: 495 GLLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
           G+   D G ++++        G   + IV KS GGF Y T+DLAA   R  +  AD I+ 
Sbjct: 279 GIAVEDQGAQVVFLDELANKDGEPSVFIVQKSGGGFLYATTDLAACDYRSNKLGADRILI 338

Query: 550 VTDLGQGVHFRLLE 563
             D  Q +HF  +E
Sbjct: 339 FVDARQSLHFNQVE 352



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 108/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+ DKL +  R ++L+  E +E  + V  G +KYADLS NR  DY+F++D ML   G
Sbjct: 400  AVSRATDKLAE--RESDLSAEERAEIARKVGIGAVKYADLSKNRTSDYIFNWDTMLSFEG 457

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
             TA YL YAYTR+ SI R AGI++  L     + P+S+   +E ALA  L++  +VL  +
Sbjct: 458  ATAPYLQYAYTRVRSIFRKAGIDAASL-----NAPISIVEAQEKALAIKLIQFEEVLDQM 512

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
              D   H LC YLY++++ +  FY+ C  ++   E   K     RL+L    AK + K  
Sbjct: 513  IGDATPHVLCSYLYELASLYMSFYETCPVLKDGVEPATK---ESRLMLCNLVAKTLAKGL 569

Query: 1109 DILNIRTVHKM 1119
            D+L I  + +M
Sbjct: 570  DLLGIEVMEQM 580



 Score = 48.9 bits (115), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 30/162 (18%)

Query: 9   MSVRDYLSDVFTHA-VQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++R  L +    A V    PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRQILVEKAVAAMVAAGLPE--DTNPAVTQSTRP---QFGDYQINGAMGAAKKLK--- 52

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
              NP ++AQ I          N  ++ +  + E A PGF+N+ L      E + D + +
Sbjct: 53  --TNPRELAQKIID--------NLDVSDIASQTEIAGPGFINIHLKP----EFLADTLSS 98

Query: 128 GVQPPTLN-----KKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             Q   L          V+VD+SSPN+A++      HL S I
Sbjct: 99  ANQDEKLGVAEHASAQNVVVDYSSPNLAKE--MHVGHLRSTI 138


>gi|229524081|ref|ZP_04413486.1| arginyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229337662|gb|EEO02679.1| arginyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
          Length = 599

 Score =  235 bits (600), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 163

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 164 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 223

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 224 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 283

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E   ++   PM ++  K DGGF Y T+D+A 
Sbjct: 284 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 343

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 344 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 391

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 392 -FGMMLGKDGRPFKTRAGGTVRLADL 416



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 157 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 216

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 217 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 276

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 277 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 336

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 337 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 395

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 396 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PELSAEEKANIANTVAMAAVK 453

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 454 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 500



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 429  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 488

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+ ++ +  V R+   H +C 
Sbjct: 489  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFDEAVQSVAREGQPHIMCS 543

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 544  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 599



 Score = 44.3 bits (103), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADYSAPNVAKE--MHVGHLRSTI 159


>gi|161502977|ref|YP_001570089.1| arginyl-tRNA synthetase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:- str. RSK2980]
 gi|189083545|sp|A9MNC4.1|SYR_SALAR RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|160864324|gb|ABX20947.1| hypothetical protein SARI_01039 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-]
          Length = 577

 Score =  235 bits (600), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 146/389 (37%), Positives = 215/389 (55%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  P    +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEQVQQALASDRLGVSQPA---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEGFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEGFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 479



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  P    +  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEQVQQALASDRLGVSQPA---RQTIVVDYSAPNVAKE 127


>gi|74311774|ref|YP_310193.1| arginyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|383177881|ref|YP_005455886.1| arginyl-tRNA synthetase [Shigella sonnei 53G]
 gi|414575520|ref|ZP_11432723.1| arginyl-tRNA synthetase [Shigella sonnei 3233-85]
 gi|415850789|ref|ZP_11527649.1| arginyl-tRNA synthetase [Shigella sonnei 53G]
 gi|418264242|ref|ZP_12884799.1| arginyl-tRNA synthetase [Shigella sonnei str. Moseley]
 gi|420358035|ref|ZP_14859036.1| arginyl-tRNA synthetase [Shigella sonnei 3226-85]
 gi|420362891|ref|ZP_14863796.1| arginyl-tRNA synthetase [Shigella sonnei 4822-66]
 gi|109895036|sp|Q3Z2Q4.1|SYR_SHISS RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|73855251|gb|AAZ87958.1| arginine tRNA synthetase [Shigella sonnei Ss046]
 gi|323165334|gb|EFZ51122.1| arginyl-tRNA synthetase [Shigella sonnei 53G]
 gi|391286097|gb|EIQ44650.1| arginyl-tRNA synthetase [Shigella sonnei 3226-85]
 gi|391287504|gb|EIQ46029.1| arginyl-tRNA synthetase [Shigella sonnei 3233-85]
 gi|391295464|gb|EIQ53620.1| arginyl-tRNA synthetase [Shigella sonnei 4822-66]
 gi|397902358|gb|EJL18683.1| arginyl-tRNA synthetase [Shigella sonnei str. Moseley]
          Length = 578

 Score =  235 bits (600), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 210/392 (53%), Gaps = 46/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MTPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGDEMELADLEGFYRDAK 198

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 199 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 258

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 259 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 315

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 316 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 368

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 369 M------FGMMLGKDGKPFKTRAGGTVKLADL 394



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 185/349 (53%), Gaps = 53/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGDEMELADLEGFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 195 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 255 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 374 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 432 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 480



 Score =  136 bits (343), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 398  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 455

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 456  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 511

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 512  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 567

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 568  DTLGIETVERM 578



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MTPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|421351805|ref|ZP_15802170.1| arginyl-tRNA synthetase [Vibrio cholerae HE-25]
 gi|395952250|gb|EJH62864.1| arginyl-tRNA synthetase [Vibrio cholerae HE-25]
          Length = 577

 Score =  235 bits (600), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 152/392 (38%), Positives = 215/392 (54%), Gaps = 46/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIK----DIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FLS  +   Q +    D+ +   Q  P T      ++ D+S+PN+AKEMHVGHLRS
Sbjct: 82  FINIFLSEEFLAAQAEAALADVRLGVAQEAPKT------IVADYSAPNVAKEMHVGHLRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+
Sbjct: 136 TIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYR 195

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER- 475
           ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT   
Sbjct: 196 ESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTREN 255

Query: 476 --GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   + Q+V  L+ KGL   DDG ++++ E   ++   PM ++  K DGGF Y 
Sbjct: 256 VMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYT 315

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H
Sbjct: 316 TTDIACAKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHH 368

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 369 A------FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKANIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 478



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 577



 Score = 43.9 bits (102), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 27/124 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 81

Query: 107 FVNVFLS----RVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+FLS       A   + D+ +   Q  P T      ++ D+S+PN+A++      HL
Sbjct: 82  FINIFLSEEFLAAQAEAALADVRLGVAQEAPKT------IVADYSAPNVAKE--MHVGHL 133

Query: 161 PSQI 164
            S I
Sbjct: 134 RSTI 137


>gi|395230689|ref|ZP_10408990.1| arginyl-tRNA synthetase [Citrobacter sp. A1]
 gi|424733032|ref|ZP_18161602.1| arginyl-trna synthetase [Citrobacter sp. L17]
 gi|394715632|gb|EJF21440.1| arginyl-tRNA synthetase [Citrobacter sp. A1]
 gi|422892580|gb|EKU32435.1| arginyl-trna synthetase [Citrobacter sp. L17]
          Length = 577

 Score =  235 bits (600), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 150/392 (38%), Positives = 212/392 (54%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + ++  + +   GV  PT   K  V+VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAQHVQQALASDRLGVTQPT---KQTVVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 186/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADID 477



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L     +  V +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDESAL----ANAQVIINEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     +   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENE----EIRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +   GV  PT   K  V+VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAQHVQQALASDRLGVTQPT---KQTVVVDYSAPNVAKE 127


>gi|254286807|ref|ZP_04961760.1| arginyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|150423098|gb|EDN15046.1| arginyl-tRNA synthetase [Vibrio cholerae AM-19226]
          Length = 599

 Score =  235 bits (600), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 152/392 (38%), Positives = 215/392 (54%), Gaps = 46/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 303 FVNVFLSRVYAGEQIK----DIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FLS  +   Q +    D+ +   Q  P T      ++ D+S+PN+AKEMHVGHLRS
Sbjct: 104 FINIFLSEEFLAAQAEAALADVRLGVAQEAPKT------IVADYSAPNVAKEMHVGHLRS 157

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+
Sbjct: 158 TIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYR 217

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER- 475
           ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT   
Sbjct: 218 ESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTREN 277

Query: 476 --GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   + Q+V  L+ KGL   DDG ++++ E   ++   PM ++  K DGGF Y 
Sbjct: 278 VMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYT 337

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H
Sbjct: 338 TTDIACAKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHH 390

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 391 A------FGMMLGKDGRPFKTRAGGTVRLADL 416



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 157 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 216

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 217 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 276

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 277 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 336

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 337 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 395

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 396 LGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKN--PELSAEEKANIANTVAMAAVK 453

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 454 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 500



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 429  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 488

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 489  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 543

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 544  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 599



 Score = 43.9 bits (102), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 27/124 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 107 FVNVFLS----RVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+FLS       A   + D+ +   Q  P T      ++ D+S+PN+A++      HL
Sbjct: 104 FINIFLSEEFLAAQAEAALADVRLGVAQEAPKT------IVADYSAPNVAKE--MHVGHL 155

Query: 161 PSQI 164
            S I
Sbjct: 156 RSTI 159


>gi|410613264|ref|ZP_11324328.1| arginyl-tRNA synthetase [Glaciecola psychrophila 170]
 gi|410167166|dbj|GAC38217.1| arginyl-tRNA synthetase [Glaciecola psychrophila 170]
          Length = 578

 Score =  235 bits (600), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 196/349 (56%), Gaps = 21/349 (6%)

Query: 220 QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV 279
           Q A   +G    + A  +      FG +Q N AMAL K+ K     +NP DIAQ I  VV
Sbjct: 12  QAALTAIGAPEGTPAPLSRSTRVGFGHYQFNGAMALTKLLK-----QNPRDIAQKIVDVV 66

Query: 280 TSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVD 339
                    L   ++K+EVA PGF+N+++   +  +Q++    +        K+  V+VD
Sbjct: 67  --------ELDDEVEKLEVAGPGFINIYIKPQWLAQQLQVANADSRLAIKTEKQQTVVVD 118

Query: 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFP 399
           +S+PN+AKEMHVGHLRSTIIGD++++ LE+LGH V+R NH+GDWGTQFGML+AHL DK  
Sbjct: 119 YSAPNLAKEMHVGHLRSTIIGDSVAKTLEFLGHKVIRQNHMGDWGTQFGMLLAHLNDKLA 178

Query: 400 DYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRR 459
                   ++DL+ FY+ +K RFD ++ F  RA   VV LQ  D    + W+   DVS  
Sbjct: 179 ANEIAETALSDLEDFYRAAKVRFDNEDGFADRARDYVVKLQSGDAQCMQLWQNFIDVSIA 238

Query: 460 DFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW----GEDRG 512
             +++Y++LNV+L      GES Y   +   V  L+  G++    G ++ +     +  G
Sbjct: 239 HSEEVYEKLNVSLKRSDVMGESAYNHDLAATVAELKTAGIVVESQGAQVAFLQEMADKEG 298

Query: 513 SIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           +    IV KS GG+ Y T+D AAIR R     AD  +  TD+ Q +HF+
Sbjct: 299 NPAAYIVQKSGGGYLYATTDQAAIRYRNGVLGADRTLIFTDVRQALHFK 347



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 199/379 (52%), Gaps = 57/379 (15%)

Query: 536 RQRIEEEKADWIVY---VTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           R  I+ EK   +V      +L + +H   L  STIIGD++++ LE+LGH V+R NH+GDW
Sbjct: 104 RLAIKTEKQQTVVVDYSAPNLAKEMHVGHLR-STIIGDSVAKTLEFLGHKVIRQNHMGDW 162

Query: 593 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 652
           GTQFGML+AHL DK          ++DL+ FY+ +K RFD ++ F  RA   VV LQ  D
Sbjct: 163 GTQFGMLLAHLNDKLAANEIAETALSDLEDFYRAAKVRFDNEDGFADRARDYVVKLQSGD 222

Query: 653 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYL--------- 700
               + W+   DVS    +++Y++LNV+L      GES Y   +   V  L         
Sbjct: 223 AQCMQLWQNFIDVSIAHSEEVYEKLNVSLKRSDVMGESAYNHDLAATVAELKTAGIVVES 282

Query: 701 ------------EKKGNLS--LTKKLGIVYV------------------------TDLGQ 722
                       +K+GN +  + +K G  Y+                        TD+ Q
Sbjct: 283 QGAQVAFLQEMADKEGNPAAYIVQKSGGGYLYATTDQAAIRYRNGVLGADRTLIFTDVRQ 342

Query: 723 GVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRR 782
            +HF+     A+KAG +  +++  +   FG++LG D K FKTR+G TVKL+ELL+E + R
Sbjct: 343 ALHFKQTGIVARKAGFIKADQS-YEHCPFGMMLGSDGKPFKTRTGGTVKLAELLEEAIER 401

Query: 783 SLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAV 842
           +   +    R ++L+  E       V  G +KYADLS NR  DY+F++D ML   GNTA 
Sbjct: 402 A--AILINKRESDLSAQERKIIADKVGIGAVKYADLSKNRTTDYIFNWDTMLSFEGNTAP 459

Query: 843 YLLYAYTRIASIARTAGIN 861
           YL YAY R+ SI R A ++
Sbjct: 460 YLQYAYARVQSIFRKADVD 478



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R ++L+  E       V  G +KYADLS NR  DY+F++D ML   GNTA YL YAY R+
Sbjct: 409  RESDLSAQERKIIADKVGIGAVKYADLSKNRTTDYIFNWDTMLSFEGNTAPYLQYAYARV 468

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI R A ++  +L+       + LE  +E  LA  L++  + +  V+ +   H LC Y+
Sbjct: 469  QSIFRKADVDDVNLQ-----ADIQLEEVQEQLLAVKLMQYVEAIKQVSSEATPHVLCTYI 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y++++ F  FY+ C  ++   EG  +     RL+LA+ TAK ++   D+L I T+ KM
Sbjct: 524  YELASLFMSFYEACPILK---EGIDEQTKNSRLMLAQLTAKTLQSGLDLLGIETMEKM 578



 Score = 66.6 bits (161), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 105/245 (42%), Gaps = 29/245 (11%)

Query: 24  QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV 83
           Q A   +G    + A  +      FG +Q N AMAL K+ K     +NP DIAQ I  VV
Sbjct: 12  QAALTAIGAPEGTPAPLSRSTRVGFGHYQFNGAMALTKLLK-----QNPRDIAQKIVDVV 66

Query: 84  TSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVD 143
                    L   ++K+E A PGF+N+++   +  +Q++    +        K+  V+VD
Sbjct: 67  --------ELDDEVEKLEVAGPGFINIYIKPQWLAQQLQVANADSRLAIKTEKQQTVVVD 118

Query: 144 FSSPNIARKGGFLYPHLPSQIHDILISKA---IAEEEKKQGISSSSSSQTKGTAKKMNVP 200
           +S+PN+A++      HL S I    ++K    +  +  +Q       +Q       +N  
Sbjct: 119 YSAPNLAKE--MHVGHLRSTIIGDSVAKTLEFLGHKVIRQNHMGDWGTQFGMLLAHLNDK 176

Query: 201 VSDRMSVRDYLSDV--FTHAVQVAFPELGDKTASVASTNEKYVHKF--GDFQCNDAMALC 256
           ++        LSD+  F  A +V F    D     A     YV K   GD QC   M L 
Sbjct: 177 LAANEIAETALSDLEDFYRAAKVRF----DNEDGFADRARDYVVKLQSGDAQC---MQLW 229

Query: 257 KIFKD 261
           + F D
Sbjct: 230 QNFID 234


>gi|365967404|ref|YP_004948966.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           ANH9381]
 gi|416076163|ref|ZP_11585291.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype b str. SCC1398]
 gi|348005306|gb|EGY45793.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype b str. SCC1398]
 gi|365746317|gb|AEW77222.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           ANH9381]
          Length = 577

 Score =  235 bits (600), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 213/386 (55%), Gaps = 35/386 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E+A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E I + + +         K  V+VD+SSPN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +KK +
Sbjct: 142 VVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFYRAAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLTE+   GES 
Sbjct: 201 DEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEKDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L+K+GL   DDG  +++      +D G + + + K DGGF Y T+D+AA
Sbjct: 261 YNPMLPGIVEGLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E  KA+  +  +D  Q  H   ++++ +    I+R   Y+  D  +L H      
Sbjct: 321 AKYRYETLKANRALVFSDTRQSQH---MQQAWL----ITRKAGYV-PDSFQLEH-----K 367

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 368 NFGMMLGKDGKPFKTRSGDTVKLADL 393



 Score =  220 bits (560), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 135/340 (39%), Positives = 187/340 (55%), Gaps = 54/340 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLTE+
Sbjct: 194 RAAKKHYDEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPGIVEGLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  +++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLEHKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSGDTVKL++LLDE + R+   +  K+  T L+  E ++  +AV  G +K
Sbjct: 373 LGKDGKPFKTRSGDTVKLADLLDEAIERAGVLISQKS--TALSEQEKADVIEAVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI
Sbjct: 431 YADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRIRSI 470



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSEQEKADVIEAVGIGSVKYADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + I+   ++ A    P++L +EKE ALA  LL+  + + LV +D   H LC YL
Sbjct: 468  RSIFNRSQISPGKVKQA----PLTLTNEKERALAIKLLQFEEAIQLVAKDGTPHILCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + +     V   RL LA  T + +K+  D+L I+TV +M
Sbjct: 524  YELAGVFSSFYEHCPILNNEDQ----QVKLSRLKLALLTERTLKQGLDLLGIKTVERM 577



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E + + + +         K  V+VD+SSPN+A++
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKE 127


>gi|269103063|ref|ZP_06155760.1| arginyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162961|gb|EEZ41457.1| arginyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 576

 Score =  235 bits (600), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 139/386 (36%), Positives = 216/386 (55%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +          N  L ++ +K+E+A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVID--------NLDLGEMAEKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL++ +   + ++ + +        K+  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLNKQWLAARAEEALNDDRLSVAKEKEQTIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA++  K  D    S  I+DL+ FY+ESK  +
Sbjct: 142 VVRTLEFLGHNVIRANHLGDWGTQFGMLIANMVRKEQDGSDVSMNISDLEGFYRESKVLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DED  F + A   VV LQ  D    + W+ + +++ +  Q+ YDRLNV+LT+    GES 
Sbjct: 202 DEDPEFAETARNYVVRLQSGDEYCHEKWKQLVEITLKQNQRNYDRLNVSLTDENVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y + +  +V  L++KGL   DDG  +++ +   ++   PM ++  K DGG+ Y T+D+A 
Sbjct: 262 YNEMLPGIVADLKEKGLAVEDDGAVVVFLDEYKNKDGEPMGVIIQKRDGGYLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E+  AD ++Y  D  Q  H        ++  +I R   Y+   V   +H      
Sbjct: 322 AKYRYEKLHADRVLYFIDSRQHQHL-------MMAWSIVRKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  222 bits (566), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 192/354 (54%), Gaps = 53/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA++  K  D    S  I+DL+ FY
Sbjct: 135 STIIGDAVVRTLEFLGHNVIRANHLGDWGTQFGMLIANMVRKEQDGSDVSMNISDLEGFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESK  +DED  F + A   VV LQ  D    + W+ + +++ +  Q+ YDRLNV+LT+ 
Sbjct: 195 RESKVLYDEDPEFAETARNYVVRLQSGDEYCHEKWKQLVEITLKQNQRNYDRLNVSLTDE 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y + +  +V  L++KG                         + + K+ G    
Sbjct: 255 NVMGESMYNEMLPGIVADLKEKGLAVEDDGAVVVFLDEYKNKDGEPMGVIIQKRDGGYLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H  +     +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYEKLHADRVLYFIDSRQHQHLMMAWSIVRKAGYV-PESVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   +++KN   EL+  E +E    VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAQERANKLIEEKN--PELSAEEKAEIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + AG+   D   P
Sbjct: 432 YADLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGVELADLTHP 485



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 104/180 (57%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ EL+  E +E    VA   +KYADLS +R  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 407  EEKNPELSAEEKAEIANTVAMAAVKYADLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI + AG+   DL     + P+ +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFKRAGVELADL-----THPIIITDEKEQALLSKLLQFEEAVQTVAREGHPHVMCN 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+  D+L I+T+ +M
Sbjct: 522  YLFELAGTFSSFYEACPILNAEEE-----VKQSRLKLAHLTAKTIKQGLDLLGIKTLDRM 576



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +          N  L ++ +K+E A PG
Sbjct: 35  QFGDYQANGVMGVAKQLG-----TNPREFAQKVID--------NLDLGEMAEKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL++ +   + ++ + +        K+  ++VD+S+PN+A++      HL S I
Sbjct: 82  FINIFLNKQWLAARAEEALNDDRLSVAKEKEQTIVVDYSAPNVAKE--MHVGHLRSTI 137


>gi|392311208|ref|ZP_10273742.1| arginyl-tRNA ligase [Pseudoalteromonas citrea NCIMB 1889]
          Length = 580

 Score =  235 bits (600), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 147/371 (39%), Positives = 202/371 (54%), Gaps = 69/371 (18%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD++ R LE+ G  VVR NH+GDWGTQFGMLIAHL+D     +  +S  
Sbjct: 133 HLR----STIIGDSVVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDLLNQGIDLESVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W +  D S +  +++Y R
Sbjct: 189 LADLETFYRDAKKRFDDEEGFADKARNYVVKLQSGDAHCEKLWRLFIDTSVKHSEEVYQR 248

Query: 677 LNVTLTER---GESFYQKHMEQLVPYLEKKGNLSL------------------------- 708
           LNVTLT      ES Y   +  ++  L+ K N+++                         
Sbjct: 249 LNVTLTRNDIMAESAYNGELNTIISLLKDK-NIAVEDQGAQVVFLDELANKDGEPSVFIV 307

Query: 709 --------------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                               + KLG   I+   D  Q +HF  +E  A+KAG+L  ++T 
Sbjct: 308 QKSGGGFLYATTDLAACDYRSNKLGADRILIFVDARQSLHFNQVELTARKAGLLR-DETS 366

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805
            +F  FG ++G D K FKTR+G TVKL++LL+E + R+ DKL D  R + L+ TE +E  
Sbjct: 367 YEFSPFGTMMGSDGKPFKTRTGGTVKLADLLEEAISRATDKLAD--RESGLSDTERAEIA 424

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR--------- 856
           + V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTR+ SI R         
Sbjct: 425 RKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRVRSIFRKADIDSSAL 484

Query: 857 TAGINSEDPPE 867
           TA IN E P E
Sbjct: 485 TATINIEQPQE 495



 Score =  229 bits (584), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 145/375 (38%), Positives = 202/375 (53%), Gaps = 39/375 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  L +    A+  A    G   A   ST  +    FGD+Q N AM   K  K    
Sbjct: 1   MNIKTILIEKANAAMGAAGIPEGSNPAVTQSTRPQ----FGDYQINGAMGAAKALK---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL-------SRVYAGEQI 317
             NP ++AQ I          N  ++ + +K E+A PGF+N+ L       S   A +  
Sbjct: 53  -TNPRELAQKIID--------NLDVSDIAEKTEIAGPGFINIHLKPEFLSNSLAAANQDQ 103

Query: 318 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
           K  +    QP       +V+VDFSSPN+AKEMHVGHLRSTIIGD++ R LE+ G  VVR 
Sbjct: 104 KLAVAEHSQPQ------KVVVDFSSPNLAKEMHVGHLRSTIIGDSVVRALEFRGDTVVRQ 157

Query: 378 NHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 436
           NH+GDWGTQFGMLIAHL+D     +  +S  +ADL+ FY+++KKRFD++E F  +A   V
Sbjct: 158 NHMGDWGTQFGMLIAHLEDLLNQGIDLESVALADLETFYRDAKKRFDDEEGFADKARNYV 217

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEK 493
           V LQ  D   +K W +  D S +  +++Y RLNVTLT      ES Y   +  ++  L+ 
Sbjct: 218 VKLQSGDAHCEKLWRLFIDTSVKHSEEVYQRLNVTLTRNDIMAESAYNGELNTIISLLKD 277

Query: 494 KGLLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIV 548
           K +   D G ++++        G   + IV KS GGF Y T+DLAA   R  +  AD I+
Sbjct: 278 KNIAVEDQGAQVVFLDELANKDGEPSVFIVQKSGGGFLYATTDLAACDYRSNKLGADRIL 337

Query: 549 YVTDLGQGVHFRLLE 563
              D  Q +HF  +E
Sbjct: 338 IFVDARQSLHFNQVE 352



 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 110/191 (57%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+ DKL D  R + L+ TE +E  + V  G +KYADLS +R  DY+F++D ML   G
Sbjct: 400  AISRATDKLAD--RESGLSDTERAEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEG 457

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
             TA YL YAYTR+ SI R A I+S     +A +  +++E  +E ALA  LL++ +VL L+
Sbjct: 458  ATAPYLQYAYTRVRSIFRKADIDS-----SALTATINIEQPQEKALAIKLLQLEEVLDLM 512

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
              +   H LC YLY++++ +  FY+ C  ++ D    ++     RL+L    A  ++   
Sbjct: 513  ISEATPHVLCGYLYELASLYMTFYEACPILKDDVASDVR---DSRLVLCNLVANTLRTGL 569

Query: 1109 DILNIRTVHKM 1119
            D+L I  + +M
Sbjct: 570  DLLGIEVMEQM 580



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 71/163 (43%), Gaps = 32/163 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  L +    A+  A    G   A   ST  +    FGD+Q N AM   K  K    
Sbjct: 1   MNIKTILIEKANAAMGAAGIPEGSNPAVTQSTRPQ----FGDYQINGAMGAAKALK---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-------SRVYAGEQM 121
             NP ++AQ I          N  ++ + +K E A PGF+N+ L       S   A +  
Sbjct: 53  -TNPRELAQKIID--------NLDVSDIAEKTEIAGPGFINIHLKPEFLSNSLAAANQDQ 103

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           K  +    QP       +V+VDFSSPN+A++      HL S I
Sbjct: 104 KLAVAEHSQPQ------KVVVDFSSPNLAKE--MHVGHLRSTI 138


>gi|297579579|ref|ZP_06941507.1| arginyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297537173|gb|EFH76006.1| arginyl-tRNA synthetase [Vibrio cholerae RC385]
          Length = 599

 Score =  235 bits (599), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 148/386 (38%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQESPKTIVADYSAPNVAKEMHVGHLRSTIIGDG 163

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 164 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESKKLY 223

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 224 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 283

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   + Q+V  L+ KGL   DDG ++++ E+   +   PM ++  K DGGF Y T+D+A 
Sbjct: 284 YNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYTTTDIAC 343

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 344 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVSLEHHA----- 391

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 392 -FGMMLGKDGRPFKTRAGGTVRLADL 416



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 157 STIIGDGVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 216

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 217 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 276

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 277 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 336

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 337 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVSLEHHAFGMM 395

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 396 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PELSAEEKANIANTVAMAAVK 453

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 454 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 500



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 429  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 488

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 489  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 543

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 544  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 599



 Score = 44.3 bits (103), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 104 FINIFLSEEFLAAQAEAALADARLGVAQESPKTIVADYSAPNVAKE--MHVGHLRSTI 159


>gi|415763954|ref|ZP_11482261.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D17P-3]
 gi|348654421|gb|EGY70045.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D17P-3]
          Length = 577

 Score =  235 bits (599), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/326 (40%), Positives = 188/326 (57%), Gaps = 22/326 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ + S           L  + +K E+A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLS--------KAELQDIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E I + + +         K  V+VD+SSPN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +  T    ++DL+AFY+ +KK +
Sbjct: 142 VVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHTSEMELSDLEAFYRAAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTL E+   GES 
Sbjct: 201 DEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLAEKDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L+K+GL   DDG  +++      +D G + + + K DGGF Y T+D+AA
Sbjct: 261 YNPMLPGIVEDLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFR 560
            + R E  KA   +  +D  Q  H +
Sbjct: 321 AKYRYETLKASRALVFSDTRQSQHMQ 346



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 198/365 (54%), Gaps = 54/365 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +  T    ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHTSEMELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTL E+
Sbjct: 194 RAAKKHYDEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLAEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPGIVEDLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  ++++  FG++
Sbjct: 314 TTTDIAAAKYRYETLKASRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLEYKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSGDTVKL++LLDE + R+   +  K+  T L+  E ++  +AV  G +K
Sbjct: 373 LGKDGKPFKTRSGDTVKLADLLDEAIERAGVLISQKS--TALSEQEKADVIEAVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + IN  +  +   + + 
Sbjct: 431 YADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSQINPAEVEQASLTLTN 490

Query: 875 VEDRC 879
            ++R 
Sbjct: 491 EKERA 495



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSEQEKADVIEAVGIGSVKYADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + IN  ++  A+    ++L +EKE ALA  LL+  + + LV +D   H LC YL
Sbjct: 468  RSIFNRSQINPAEVEQAS----LTLTNEKERALAIKLLQFEEAIQLVAKDGTPHILCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + +     V   RL LA  T + +K+  D+L I+TV +M
Sbjct: 524  YELAGVFSSFYEHCPILNNEDQ----QVKLSRLKLALLTERTLKQGLDLLGIKTVERM 577



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ + S           L  + +K E A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLS--------KAELQDIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E + + + +         K  V+VD+SSPN+A++
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKE 127


>gi|261867613|ref|YP_003255535.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|415767194|ref|ZP_11483063.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D17P-2]
 gi|261412945|gb|ACX82316.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|348658650|gb|EGY76216.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D17P-2]
          Length = 577

 Score =  235 bits (599), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 213/386 (55%), Gaps = 35/386 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E+A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E I + + +         K  V+VD+SSPN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +KK +
Sbjct: 142 VVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFYRAAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLTE+   GES 
Sbjct: 201 DEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEKDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L+K+GL   DDG  +++      +D G + + + K DGGF Y T+D+AA
Sbjct: 261 YNPMLPGIVEGLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E  KA+  +  +D  Q  H   ++++ +    I+R   Y+  D  +L H      
Sbjct: 321 AKYRYETLKANRALVFSDTRQSQH---MQQAWL----ITRKAGYV-PDSFQLEH-----K 367

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 368 NFGMMLGKDGKPFKTRSGDTVKLADL 393



 Score =  219 bits (559), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 135/340 (39%), Positives = 187/340 (55%), Gaps = 54/340 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLTE+
Sbjct: 194 RAAKKHYDEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPGIVEGLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  +++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLEHKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSGDTVKL++LLDE + R+   +  K+  T L+  E ++  +AV  G +K
Sbjct: 373 LGKDGKPFKTRSGDTVKLADLLDEAIERAGVLISQKS--TALSEQEKADVIEAVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI
Sbjct: 431 YADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRIRSI 470



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 107/178 (60%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSEQEKADVIEAVGIGSVKYADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + I+  +++ A    P++L +EKE ALA  LL+  + + LV +D   H LC YL
Sbjct: 468  RSIFNRSQISPGEVKQA----PLTLTNEKERALAIKLLQFEEAIQLVAKDGTPHILCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + +     V   RL LA  T + +K+  D+L I+T+ +M
Sbjct: 524  YELAGVFSSFYEHCPILNNEDQ----QVKLSRLKLALLTERTLKQGLDLLGIKTIERM 577



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E + + + +         K  V+VD+SSPN+A++
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKE 127


>gi|330501487|ref|YP_004378356.1| arginyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328915773|gb|AEB56604.1| arginyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 579

 Score =  235 bits (599), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 140/345 (40%), Positives = 188/345 (54%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A++Q+   +       +ADL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYMQE---NPAAAESELADLEGFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  D +  + W    D+S    Q +YDRL V L+  
Sbjct: 197 RAAKKRFDESPEFADRARELVVQLQAGDAECLRLWHRFNDISLSHCQALYDRLGVKLSMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   + Q+V  LE KG L+                       + +K G     
Sbjct: 257 DVKGESAYNDDLPQVVADLEAKGLLTEDNGAQCVFMDEFKNAEGNPLPLIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+++  CA+ AG + P    M+ +GFG +
Sbjct: 317 ATTDLAATRYRANALKADRVLYFVDQRQALHFQMVFACARLAGFV-PASMEMEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+   +KDKN   EL   EL +  + V    +K
Sbjct: 376 NGPDGRPFKTRDGGTVKLVQLLDEAEQRAYSLVKDKN--PELAEDELRQIARVVGIASVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML   GNTA YLLYAYTR+ASI R  G
Sbjct: 434 YADLSKHRTSDYSFNFDLMLSFEGNTAPYLLYAYTRVASIFRKLG 478



 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 206/377 (54%), Gaps = 56/377 (14%)

Query: 203 DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 262
           DR++    L    T A+QV             +T +K     GDF  N AM L K    K
Sbjct: 14  DRLTAEGVLPAGLTPAIQVE------------NTKDK---SHGDFASNIAMMLAKPAGMK 58

Query: 263 GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV 322
                P D+A+ + + + ++        + I K+E+A PGF+N F        Q  D++ 
Sbjct: 59  -----PRDLAEKLIAALPAD--------EQITKVEIAGPGFLNFF--------QNSDVLA 97

Query: 323 NGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHD 373
             ++    + KL         RV+VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG  
Sbjct: 98  QHLEAALADAKLGVRKSGPTQRVVVDMSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDT 157

Query: 374 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAY 433
           V+R NHVGDWGTQFGML+A++Q+   +       +ADL+ FY+ +KKRFDE   F  RA 
Sbjct: 158 VIRQNHVGDWGTQFGMLLAYMQE---NPAAAESELADLEGFYRAAKKRFDESPEFADRAR 214

Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPY 490
           + VV LQ  D +  + W    D+S    Q +YDRL V L+    +GES Y   + Q+V  
Sbjct: 215 ELVVQLQAGDAECLRLWHRFNDISLSHCQALYDRLGVKLSMADVKGESAYNDDLPQVVAD 274

Query: 491 LEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKAD 545
           LE KGLL  D+G + ++       +   +P+ + K+ GG+ Y T+DLAA R R    KAD
Sbjct: 275 LEAKGLLTEDNGAQCVFMDEFKNAEGNPLPLIVQKAGGGYLYATTDLAATRYRANALKAD 334

Query: 546 WIVYVTDLGQGVHFRLL 562
            ++Y  D  Q +HF+++
Sbjct: 335 RVLYFVDQRQALHFQMV 351



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 97/176 (55%), Gaps = 11/176 (6%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   +KDKN   EL   EL +  + V    +KYADLS +R  DY F+FD ML   GNT
Sbjct: 402  QRAYSLVKDKN--PELAEDELRQIARVVGIASVKYADLSKHRTSDYSFNFDLMLSFEGNT 459

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYAYTR+ASI R  G   +++        ++L  ++E ALA  L + N++L  V  
Sbjct: 460  APYLLYAYTRVASIFRKLGKGVDEI-----GGQITLVADQEQALAGKLAQFNELLGNVAD 514

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
                H LC YLYDI+  FS FY+NC  +  + E         RL LA  T + +K+
Sbjct: 515  KGTPHMLCAYLYDIAGLFSSFYENCPILAAEDE----ATRNSRLRLAALTGRTLKQ 566



 Score = 44.7 bits (104), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 45/155 (29%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           DR++    L    T A+QV             +T +K     GDF  N AM L K    K
Sbjct: 14  DRLTAEGVLPAGLTPAIQVE------------NTKDK---SHGDFASNIAMMLAKPAGMK 58

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
                P D+A+ + + + ++        + I K+E A PGF+N F        Q  D++ 
Sbjct: 59  -----PRDLAEKLIAALPAD--------EQITKVEIAGPGFLNFF--------QNSDVLA 97

Query: 127 NGVQPPTLNKKL---------RVLVDFSSPNIARK 152
             ++    + KL         RV+VD S+PN+A++
Sbjct: 98  QHLEAALADAKLGVRKSGPTQRVVVDMSAPNLAKE 132


>gi|444348287|ref|ZP_21155985.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype b str. S23A]
 gi|443547361|gb|ELT56871.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype b str. S23A]
          Length = 551

 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 213/386 (55%), Gaps = 35/386 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E+A PG
Sbjct: 9   QFGDYQANGIMPAAKKLG-----INPREFAQLVLA--------KAELQDIAEKTEIAGPG 55

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E I + + +         K  V+VD+SSPN+AKEMHVGHLRSTIIGD 
Sbjct: 56  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKEMHVGHLRSTIIGDA 115

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +KK +
Sbjct: 116 VVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFYRAAKKHY 174

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLTE+   GES 
Sbjct: 175 DEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEKDVMGESL 234

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L+K+GL   DDG  +++      +D G + + + K DGGF Y T+D+AA
Sbjct: 235 YNPMLPGIVEGLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLYTTTDIAA 294

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E  KA+  +  +D  Q  H   ++++ +    I+R   Y+  D  +L H      
Sbjct: 295 AKYRYETLKANRALVFSDTRQSQH---MQQAWL----ITRKAGYV-PDSFQLEH-----K 341

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 342 NFGMMLGKDGKPFKTRSGDTVKLADL 367



 Score =  219 bits (558), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 135/340 (39%), Positives = 187/340 (55%), Gaps = 54/340 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 109 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFY 167

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTLTE+
Sbjct: 168 RAAKKHYDEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLTEK 227

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 228 DVMGESLYNPMLPGIVEGLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLY 287

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  +++   FG++
Sbjct: 288 TTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLEHKNFGMM 346

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSGDTVKL++LLDE + R+   +  K+  T L+  E ++  +AV  G +K
Sbjct: 347 LGKDGKPFKTRSGDTVKLADLLDEAIERAGVLISQKS--TALSEQEKADVIEAVGIGSVK 404

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI
Sbjct: 405 YADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRIRSI 444



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 382  KSTALSEQEKADVIEAVGIGSVKYADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRI 441

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + I+   ++ A    P++L +EKE ALA  LL+  + + LV +D   H LC YL
Sbjct: 442  RSIFNRSQISPGKVKQA----PLTLTNEKERALAIKLLQFEEAIQLVAKDGTPHILCAYL 497

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + +     V   RL LA  T + +K+  D+L I+TV +M
Sbjct: 498  YELAGVFSSFYEHCPILNNEDQ----QVKLSRLKLALLTERTLKQGLDLLGIKTVERM 551



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E A PG
Sbjct: 9   QFGDYQANGIMPAAKKLG-----INPREFAQLVLA--------KAELQDIAEKTEIAGPG 55

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E + + + +         K  V+VD+SSPN+A++
Sbjct: 56  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKE 101


>gi|392422771|ref|YP_006459375.1| arginyl-tRNA ligase [Pseudomonas stutzeri CCUG 29243]
 gi|390984959|gb|AFM34952.1| arginyl-tRNA ligase [Pseudomonas stutzeri CCUG 29243]
          Length = 579

 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 154/408 (37%), Positives = 220/408 (53%), Gaps = 52/408 (12%)

Query: 211 LSDVFTHAVQVAF---------PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           + D   H +Q A          PE       V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQALVRLTAEGVLPEGLTPAIQVENTRDK---SHGDFASNIAMMLAKPAGL 57

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
           K     P D+A+ +       +A  P  A+ I K+E+A PGF+N F +     E+++  +
Sbjct: 58  K-----PRDLAEKL-------IAALPQDAQ-ISKVEIAGPGFLNFFQNSDALAERLEAAL 104

Query: 322 VNGVQPPTLNKKL----RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
            +   P    +K     RV++D SSPN+AKEMHVGHLRSTIIGD + R+LEYLG +V+R 
Sbjct: 105 AD---PQLAVRKASAPQRVVIDLSSPNLAKEMHVGHLRSTIIGDAVGRVLEYLGDEVIRQ 161

Query: 378 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           NHVGDWGTQFGML+A+L++K          ++DL+ FY+ +K+RFDE   F  RA + VV
Sbjct: 162 NHVGDWGTQFGMLLAYLEEKPA---AAESELSDLEQFYRAAKQRFDESAGFADRARELVV 218

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKK 494
            LQ  D      W    D+S    QKIYDRLNV LT    +GES Y   +  +V  L  K
Sbjct: 219 KLQAGDAQCLSLWTRFNDISLSHCQKIYDRLNVKLTPADVKGESAYNAELADIVEALRSK 278

Query: 495 GLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
           GLL  D+G + ++       +   +P+ + K+ GG+ Y T+DLAA+R R +   AD  +Y
Sbjct: 279 GLLTEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLYATTDLAAMRYRSQVLHADRALY 338

Query: 550 VTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
             D  Q +HF++  E       ++R   ++ H  ++L H+G +GT  G
Sbjct: 339 FVDQRQALHFQMAFE-------VARRAGFV-HAGMQLEHMG-FGTMNG 377



 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/345 (39%), Positives = 187/345 (54%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R+LEYLG +V+R NHVGDWGTQFGML+A+L++K          ++DL+ FY
Sbjct: 140 STIIGDAVGRVLEYLGDEVIRQNHVGDWGTQFGMLLAYLEEKPA---AAESELSDLEQFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA + VV LQ  D      W    D+S    QKIYDRLNV LT  
Sbjct: 197 RAAKQRFDESAGFADRARELVVKLQAGDAQCLSLWTRFNDISLSHCQKIYDRLNVKLTPA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   +  +V  L  KG L+                       + +K G     
Sbjct: 257 DVKGESAYNAELADIVEALRSKGLLTEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q +HF++  E A++AG ++    +++ +GFG +
Sbjct: 317 ATTDLAAMRYRSQVLHADRALYFVDQRQALHFQMAFEVARRAGFVHAG-MQLEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+   +K KN   +L  +EL +  +AV    +K
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLDEAEQRAYALVKGKN--PDLDESELRQIARAVGISAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML   GNTA YLLYAYTR+AS+ R  G
Sbjct: 434 YADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYTRVASVFRKLG 478



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ +L  +EL +  +AV    +KYADLS +R  DY F+F+ ML   GNTA YLLYAYT
Sbjct: 409  KGKNPDLDESELRQIARAVGISAVKYADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+ R  G   ++  +A Q   + LE E+E ALA  L +  +VL  V      H LC 
Sbjct: 469  RVASVFRKLGQGIDE--IAGQ---IQLEAEQELALAAKLAQFGEVLNSVGEKGEPHLLCA 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY++C  +  +   + ++    RL LA  T K +K+
Sbjct: 524  YLYDLAGLFSSFYEHCPILSAEQPEQKQS----RLRLAALTGKTLKQ 566



 Score = 43.9 bits (102), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 32/151 (21%)

Query: 15  LSDVFTHAVQVAF---------PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           + D   H +Q A          PE       V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQALVRLTAEGVLPEGLTPAIQVENTRDK---SHGDFASNIAMMLAKPAGL 57

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           K     P D+A+ +       +A  P  A+ I K+E A PGF+N F +     E+++  +
Sbjct: 58  K-----PRDLAEKL-------IAALPQDAQ-ISKVEIAGPGFLNFFQNSDALAERLEAAL 104

Query: 126 VNGVQPPTLNKKL----RVLVDFSSPNIARK 152
            +   P    +K     RV++D SSPN+A++
Sbjct: 105 AD---PQLAVRKASAPQRVVIDLSSPNLAKE 132


>gi|84393465|ref|ZP_00992221.1| arginyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84375893|gb|EAP92784.1| arginyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 577

 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/386 (37%), Positives = 212/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+        +L  +  K+E+A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------NLDGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  +Q    + +     T  +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FLNIFLDEAFLAQQADAALADSRLGVTAAEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERIQAETGEVSMELSDLEQFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARGYVVKLQSGDEYCAEMWKKLVDVTMVQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+ +GL +  DG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNHMLSNIVSDLQTQGLAKESDGAQVVFLDEYKNKDGDPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRFEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 192/365 (52%), Gaps = 54/365 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+ FY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERIQAETGEVSMELSDLEQFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEEFAVKARGYVVKLQSGDEYCAEMWKKLVDVTMVQNQRNYDRLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   +  +V  L+ +G                                     
Sbjct: 255 DVMGESMYNHMLSNIVSDLQTQGLAKESDGAQVVFLDEYKNKDGDPMGVIVQKRDGGFLY 314

Query: 705 ---NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRFEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E       VA   +K
Sbjct: 374 LGKDGKPFKTRAGGTVRLADLLDEAEVRATQLIESKN--PELAEDEKKTIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS +R  DYVF ++ ML   GNTA Y+ YAYTR+ASI   AGI S D  E D   +E
Sbjct: 432 YADLSKHRTTDYVFDWENMLAFEGNTAPYMQYAYTRVASIFAKAGI-SMDSLEGDIKITE 490

Query: 875 VEDRC 879
            +++ 
Sbjct: 491 EKEKA 495



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E       VA   +KYADLS +R  DYVF ++ ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAEDEKKTIANTVAMAAVKYADLSKHRTTDYVFDWENMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AGI+ + L        + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGISMDSLE-----GDIKITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    TV   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----TVKQSRLKLAALTAKTIKQGLSLLGIETLERM 577



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+        +L  +  K+E A PG
Sbjct: 35  QFGDYQANGVMGVAKRLG-----TNPREFAQKVLDVL--------NLDGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL   +  +Q    + +     T  +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FLNIFLDEAFLAQQADAALADSRLGVTAAEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|420372851|ref|ZP_14873049.1| arginyl-tRNA synthetase [Shigella flexneri 1235-66]
 gi|391317767|gb|EIQ75017.1| arginyl-tRNA synthetase [Shigella flexneri 1235-66]
          Length = 577

 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 149/392 (38%), Positives = 212/392 (54%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + ++  + +   GV  P    K  V+VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAQHVQQALASDRLGVTQPA---KQTVVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 188/347 (54%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADID 477



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L     +  V +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDESAL----ANAQVIINEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     +   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENE----EIRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +   GV  P    K  V+VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAQHVQQALASDRLGVTQPA---KQTVVVDYSAPNVAKE 127


>gi|365107588|ref|ZP_09335915.1| arginyl-tRNA synthetase [Citrobacter freundii 4_7_47CFAA]
 gi|363641287|gb|EHL80687.1| arginyl-tRNA synthetase [Citrobacter freundii 4_7_47CFAA]
          Length = 577

 Score =  234 bits (598), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 210/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  + ++  + +     T   K  V+VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLAQHVQQALASDRLGVTQPAKQTVVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHNVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ALADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (568), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 187/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADID 477



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L     +  V +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDESAL----ANAQVVISEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     +   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENE----EIRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +     T   K  V+VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAQHVQQALASDRLGVTQPAKQTVVVDYSAPNVAKE 127


>gi|320539876|ref|ZP_08039535.1| arginyl-tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320030062|gb|EFW12082.1| arginyl-tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 576

 Score =  234 bits (598), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 149/430 (34%), Positives = 227/430 (52%), Gaps = 51/430 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD    A+  A    G      A   +    +FG++Q N  M+  K       
Sbjct: 1   MNIQVLLSDKVNQALIAA----GAPADCEAQVRQSAKAQFGNYQVNGVMSAAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L  +  K+E+A PGF+N+FL+  +   QI  ++   
Sbjct: 53  -MPPRQLAEKVLQLL--------ELGDIASKVEIAGPGFINIFLNSAWLARQIDWVLNAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V+P T      +++D+S+PN+AKEMHVGHLRSTIIGD  +R LE+LGH+V+R N
Sbjct: 104 ELGVTAVEPQT------IVIDYSAPNVAKEMHVGHLRSTIIGDAAARTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L +K  +       ++DL+ FY+++KK +DED  F  RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYL-EKMQNENASDMGLSDLEQFYRQAKKHYDEDSEFAARARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  DP  +K W  + D++    Q  Y+RLNVTLTE    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDPYCQKMWRKLVDITMAQNQLTYNRLNVTLTEGDVMGESLYNAMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L    +G  +++    +++   PM ++  K DGG+ Y T+DLA  + R E   A+ ++Y 
Sbjct: 277 LAVESEGATVVFLDEYQNKDGEPMGVIIQKKDGGYLYTTTDLACAKYRYETLGANRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
           TD  Q  H  L++   I+     R   Y+   V   +H+      FGM++      F   
Sbjct: 337 TDSRQ--HQHLMQAWAIV-----RKAGYVPESVSLEHHL------FGMMLGKDGKPFKTR 383

Query: 611 LTKSPPIADL 620
              +  ++DL
Sbjct: 384 AGGTVKLSDL 393



 Score =  226 bits (577), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 191/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R LE+LGH+V+R NHVGDWGTQFGMLIA+L +K  +       +
Sbjct: 132 HLR----STIIGDAAARTLEFLGHNVIRANHVGDWGTQFGMLIAYL-EKMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DED  F  RA   VV LQ  DP  +K W  + D++    Q  Y+RL
Sbjct: 187 SDLEQFYRQAKKHYDEDSEFAARARAYVVKLQGGDPYCQKMWRKLVDITMAQNQLTYNRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLTE    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTEGDVMGESLYNAMLPGIVADLKAKGLAVESEGATVVFLDEYQNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y TD  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDLACAKYRYETLGANRVLYYTDSRQHQHLMQAWAIVRKAGYV-PESVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKLS+LLDE + R+   +  KN H  +   E+++  + 
Sbjct: 366 HHLFGMMLGKDGKPFKTRAGGTVKLSDLLDEAIERAGQLIAGKNPH--MPAQEITQLARV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KY+DLS +R  DY+F ++ ML   GNTA Y+ YAYTRI S+ + AGI+      
Sbjct: 424 VGIGAVKYSDLSKSRTTDYIFDWNNMLAFEGNTAPYMQYAYTRIVSVFKRAGIDESSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  130 bits (327), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 11/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            + R+   +  KN H  +   E+++  + V  G +KY+DLS +R  DY+F ++ ML   GN
Sbjct: 398  IERAGQLIAGKNPH--MPAQEITQLARVVGIGAVKYSDLSKSRTTDYIFDWNNMLAFEGN 455

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA Y+ YAYTRI S+ + AGI+   L     + P+ +  E E ALA  LL+  + L  V 
Sbjct: 456  TAPYMQYAYTRIVSVFKRAGIDESSL-----TLPLVMSEEHEIALATRLLQFEEALTAVA 510

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
            R+   H +C YLY+++  FS FY++C  +  D+E     V   RL LA  T++ +K   D
Sbjct: 511  REGTPHIMCSYLYELAGLFSSFYEHCQILNGDSE----AVRQSRLKLALLTSRTLKTGLD 566

Query: 1110 ILNIRTVHKM 1119
             L I TV +M
Sbjct: 567  TLGIETVERM 576



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD    A+  A    G      A   +    +FG++Q N  M+  K       
Sbjct: 1   MNIQVLLSDKVNQALIAA----GAPADCEAQVRQSAKAQFGNYQVNGVMSAAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++         L  +  K+E A PGF+N+FL+  +   Q+  ++   
Sbjct: 53  -MPPRQLAEKVLQLL--------ELGDIASKVEIAGPGFINIFLNSAWLARQIDWVLNAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              V  V+P T      +++D+S+PN+A++
Sbjct: 104 ELGVTAVEPQT------IVIDYSAPNVAKE 127


>gi|238799211|ref|ZP_04642660.1| Arginyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238716940|gb|EEQ08807.1| Arginyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 608

 Score =  234 bits (598), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 157/443 (35%), Positives = 233/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++++  LSD  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 33  VNIQALLSDKVSQALIAA----GAPAGSEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 84

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L  +  K+E+A PGF+N+FL R +   +++  +   
Sbjct: 85  -MQPRQLAEKVIELL--------DLEGIASKVEIAGPGFINIFLDRQWVASKVEHALTAP 135

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V+P T      ++VD+S+PN+AK+MHVGHLRSTIIGD   R LE+LGH+V+R N
Sbjct: 136 KLGVAPVEPQT------IVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLEFLGHNVIRAN 189

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F  RA   VV 
Sbjct: 190 HVGDWGTQFGMLIAYLE-KMQNESASDMDLSDLELFYQQAKKTYDEDEEFALRARAYVVK 248

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   +  +V  L+ KG
Sbjct: 249 LQSGDEYCRQMWRKLVDITMAQNQIAYDRLNVTLTKDDVMGESLYNAMLPGIVADLKAKG 308

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    DG  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 309 LAVESDGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRV 365

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  
Sbjct: 366 LYYIDTRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGK 410

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 411 P-FKTRSGGTVKLSDLLDEAIER 432



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 190/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 164 HLR----STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNESASDMDL 218

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F  RA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 219 SDLELFYQQAKKTYDEDEEFALRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQIAYDRL 278

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   +  +V  L+ KG                         + + K
Sbjct: 279 NVTLTKDDVMGESLYNAMLPGIVADLKAKGLAVESDGATVVYLDEYKNKDGEPMGVIIQK 338

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 339 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDTRQHQHLMQAWTIVRKAGYV-PESVPLE 397

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +  +A
Sbjct: 398 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAIERAGKLIAEKN--PDMPADELKQVVEA 455

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ + AG++      
Sbjct: 456 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFKRAGVDESSLTL 515

Query: 868 P 868
           P
Sbjct: 516 P 516



 Score =  136 bits (342), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 106/178 (59%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +  +AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 440  KNPDMPADELKQVVEAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 499

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ + AG++   L     + P+ +  ++E ALA  LL+  +V+  V R+   H +C YL
Sbjct: 500  VSVFKRAGVDESSL-----TLPLVITEDREAALATRLLQFEEVITTVAREGTPHVMCSYL 554

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  ++E     +   RL LA  TAK +K+  D L IRTV +M
Sbjct: 555  YDVAGLFSSFYEHCQILNAESE----EIRQSRLKLAMLTAKTLKQGLDTLGIRTVERM 608



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           ++++  LSD  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 33  VNIQALLSDKVSQALIAA----GAPAGSEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 84

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++         L  +  K+E A PGF+N+FL R +   +++  +   
Sbjct: 85  -MQPRQLAEKVIELL--------DLEGIASKVEIAGPGFINIFLDRQWVASKVEHALTAP 135

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              V  V+P T      ++VD+S+PN+A++
Sbjct: 136 KLGVAPVEPQT------IVVDYSAPNVAKQ 159


>gi|407794650|ref|ZP_11141674.1| arginyl-tRNA ligase [Idiomarina xiamenensis 10-D-4]
 gi|407211023|gb|EKE80893.1| arginyl-tRNA ligase [Idiomarina xiamenensis 10-D-4]
          Length = 580

 Score =  234 bits (598), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/352 (40%), Positives = 193/352 (54%), Gaps = 55/352 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD +SR LE+LGH V+R NHVGDWGTQFGML+AH+++   D       +++L+ FY
Sbjct: 140 STIIGDAVSRTLEFLGHQVIRQNHVGDWGTQFGMLLAHMEEL--DASDSQWQLSNLETFY 197

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT-- 682
           K +KKRFDE E F  RA Q VV+LQ  D    + W+   D+S    Q++YDRL V LT  
Sbjct: 198 KAAKKRFDESETFADRARQLVVSLQSGDQYCNQLWQQFIDISLSHCQEVYDRLGVKLTRA 257

Query: 683 --------------------ERG-------------ESFYQKHMEQLVPYLEKKGNLSL- 708
                               ERG             + F  K  E L   ++KKG   L 
Sbjct: 258 DVMAESAYNDKLAGVIEHLRERGLLVEDQGAQCVFLDEFKGKDGEPLPVIVQKKGGGYLY 317

Query: 709 -----------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                       K+LG   ++Y  D  Q +HF+ +   A+KAG +   +  ++ + FG+V
Sbjct: 318 ATTDLAAIEYRQKQLGGTRLLYFVDQRQSLHFQQIFTLARKAGFVE-GELDIEHLAFGMV 376

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FK+R G   KL++LLDE  RR+L  L+ K+   EL+P +     + V    +K
Sbjct: 377 LGKDGKPFKSRDGGVTKLADLLDEAQRRALTLLQQKD--NELSPAQQQHVAEVVGISSVK 434

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
           YADLS NR  DY+F +D ML   GNTA YLLYA+TR+ S+   AGI+  + P
Sbjct: 435 YADLSKNRTSDYMFDWDTMLSFEGNTAPYLLYAFTRVRSVFEKAGIDMAEVP 486



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/334 (39%), Positives = 191/334 (57%), Gaps = 42/334 (12%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIA-QSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           GDF  N A+ L K       K NP  +A Q IA++  ++L         I K ++A PGF
Sbjct: 41  GDFASNLALMLAKT-----AKMNPRALAEQLIAALPANDL---------IAKADIAGPGF 86

Query: 304 VNVFLSR---------VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHL 354
           +N  +S+          YA +++   +    +P        V++D+SSPN+AKEMHVGHL
Sbjct: 87  INFTISQQQLLGQLQAAYASQRLN--VELSAEPDC------VVIDYSSPNLAKEMHVGHL 138

Query: 355 RSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 414
           RSTIIGD +SR LE+LGH V+R NHVGDWGTQFGML+AH+++   D       +++L+ F
Sbjct: 139 RSTIIGDAVSRTLEFLGHQVIRQNHVGDWGTQFGMLLAHMEEL--DASDSQWQLSNLETF 196

Query: 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 474
           YK +KKRFDE E F  RA Q VV+LQ  D    + W+   D+S    Q++YDRL V LT 
Sbjct: 197 YKAAKKRFDESETFADRARQLVVSLQSGDQYCNQLWQQFIDISLSHCQEVYDRLGVKLTR 256

Query: 475 ---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFT 526
                ES Y   +  ++ +L ++GLL  D G + ++     G+D   +P+ + K  GG+ 
Sbjct: 257 ADVMAESAYNDKLAGVIEHLRERGLLVEDQGAQCVFLDEFKGKDGEPLPVIVQKKGGGYL 316

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           Y T+DLAAI  R ++     ++Y  D  Q +HF+
Sbjct: 317 YATTDLAAIEYRQKQLGGTRLLYFVDQRQSLHFQ 350



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/189 (39%), Positives = 108/189 (57%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            RR+L  L+ K+   EL+P +     + V    +KYADLS NR  DY+F +D ML   GNT
Sbjct: 403  RRALTLLQQKD--NELSPAQQQHVAEVVGISSVKYADLSKNRTSDYMFDWDTMLSFEGNT 460

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYA+TR+ S+   AGI+     +A     + LEHEKE ALA  L++ N+ L  V  
Sbjct: 461  APYLLYAFTRVRSVFEKAGID-----MAEVPGEIILEHEKEQALANQLVKFNETLQSVAN 515

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H LC YL+D++ AFS FY++C  + +D       +   RL L+  TA+ +++   +
Sbjct: 516  KCMPHFLCGYLFDLAGAFSSFYEHCPILNQDD----AALRNSRLKLSALTARTLQQGLAL 571

Query: 1111 LNIRTVHKM 1119
            L I T+ KM
Sbjct: 572  LGIDTLEKM 580


>gi|170024389|ref|YP_001720894.1| arginyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|238688454|sp|B1JLM2.1|SYR_YERPY RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|169750923|gb|ACA68441.1| arginyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
          Length = 576

 Score =  234 bits (598), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 233/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK------ 318
              P  +A+ +  ++         L  +  KIE+A PGF+N+FL R +  E+++      
Sbjct: 53  -MQPRQLAERVVELL--------DLTGIASKIEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + V  V+P T      ++VD+S+PN+AK+MHVGHLRSTIIGD   R L +LGH+V+R N
Sbjct: 104 KLGVTPVEPQT------IVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLAFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F  RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFALRARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   + ++V  L+ KG
Sbjct: 217 LQSGDEYCRQMWRKLVDITMAQNQVAYDRLNVTLTKDDVMGESLYNAMLPEIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD I
Sbjct: 277 LAVESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRI 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTVKLSDLLDEAVER 400



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 189/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R L +LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F  RA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFALRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQVAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNAMLPEIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       I+Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRILYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +   A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAVERAGKLIAEKN--PDMPADELKQVINA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AG++      
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFRRAGVDESSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +   AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVINAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG++   L     + P+ +  ++E ALA  LL+  +++  V R+   H +C YL
Sbjct: 468  VSVFRRAGVDESSL-----TLPLVITEDREAALATRLLQFEEIITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  ++E     +   RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNAESE----EIRQSRLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK------ 122
              P  +A+ +  ++         L  +  KIE A PGF+N+FL R +  E+++      
Sbjct: 53  -MQPRQLAERVVELL--------DLTGIASKIEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + V  V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVTPVEPQT------IVVDYSAPNVAKQ 127


>gi|253688194|ref|YP_003017384.1| arginyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259511652|sp|C6DFD9.1|SYR_PECCP RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|251754772|gb|ACT12848.1| arginyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 576

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 226/414 (54%), Gaps = 57/414 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++        +L  + +K E+A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V+P T      +++D+S+PN+AKEMHVGHLRSTIIGD  +R LE+LGH+V+R N
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKEMHVGHLRSTIIGDAAARTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK +D+D  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASEMDLSDLEAFYREAKKHYDDDADFAERARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  Y+RLNVTLT++   GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRQMWRKLVDITMTQNQINYERLNVTLTKQDVMGESLYNSMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLNADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +Y  D  Q  H  L++  TI+     R   Y+  D V L H       FGM++ 
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVSLEH-----HMFGMMLG 374



 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 143/361 (39%), Positives = 195/361 (54%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASEMDL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+E+KK +D+D  F +RA   VV LQ  D   ++ W  + D++    Q  Y+RL
Sbjct: 187 SDLEAFYREAKKHYDDDADFAERARGYVVKLQGGDEYCRQMWRKLVDITMTQNQINYERL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT++   GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTKQDVMGESLYNSMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLNADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KLSELLDE   R+L  + +KN   E    ELS   + 
Sbjct: 366 HHMFGMMLGKDGKPFKTRAGGTIKLSELLDEAYDRALKLIAEKNPQME--SDELSALAKV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V+ G IKYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI + AGI  +   +
Sbjct: 424 VSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGIQEDSLTQ 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  144 bits (362), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 111/188 (59%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  + +KN   E    ELS   + V+ G IKYADLS +R  DYVF +D ML   GNTA
Sbjct: 400  RALKLIAEKNPQME--SDELSALAKVVSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI + AGI  + L     + P++L  E+EFALA  LL+  + +  V R+
Sbjct: 458  PYMQYAYTRVASIFKRAGIQEDSL-----TQPITLSDEREFALATRLLQFEETITSVARE 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  +++     V   RL LA  TAK +K+  D L
Sbjct: 513  GTPHVMCSYLYDLAGLFSGFYEHCPILNAESD----DVRQSRLRLALLTAKTLKQGLDTL 568

Query: 1112 NIRTVHKM 1119
             I TV KM
Sbjct: 569  GIETVEKM 576



 Score = 56.6 bits (135), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++        +L  + +K E A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V+P T      +++D+S+PN+A++
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKE 127


>gi|167625769|ref|YP_001676063.1| arginyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|189083548|sp|B0TVV1.1|SYR_SHEHH RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|167355791|gb|ABZ78404.1| arginyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 581

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/329 (41%), Positives = 194/329 (58%), Gaps = 30/329 (9%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K        KNP +IAQ         L  N   +  ++K+E+A PGF+
Sbjct: 41  GDFATNLAMMLTK-----AAGKNPREIAQL--------LIDNLPESAHVEKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIG 360
           N F+       Q+  + +N    G++ PT      V+VD+SSPN+AKEMHVGHLRSTIIG
Sbjct: 88  NFFIDDNALANQLM-VALNSDHLGLELPTPQT---VVVDYSSPNLAKEMHVGHLRSTIIG 143

Query: 361 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESK 419
           D++ R LE++GH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K
Sbjct: 144 DSVVRALEFMGHKVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAKMELSDLENFYRAAK 203

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
            RFDE   F  RA + VV LQ  D    K W    D+S     ++Y+RL V+LT    RG
Sbjct: 204 VRFDESAEFATRARKLVVELQSGDEYCNKLWREFNDISLSHCHELYERLGVSLTRADVRG 263

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSD 531
           ES Y   + Q+V  L+ +GLL   +G K+++ ++  +     +P+ I K+DGG+ Y TSD
Sbjct: 264 ESAYNSDLAQVVADLDAQGLLSESNGAKVVFQDEFKNKEGEPLPVIIQKADGGYLYATSD 323

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           LAA+R R     AD  +Y  DL Q +HF+
Sbjct: 324 LAAMRYRSNVLNADRALYFVDLRQALHFQ 352



 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/345 (38%), Positives = 185/345 (53%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE++GH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRALEFMGHKVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAKMELSDLENF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE   F  RA + VV LQ  D    K W    D+S     ++Y+RL V+LT 
Sbjct: 199 YRAAKVRFDESAEFATRARKLVVELQSGDEYCNKLWREFNDISLSHCHELYERLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV------------------------- 715
              RGES Y   + Q+V  L+ +G LS +    +V                         
Sbjct: 259 ADVRGESAYNSDLAQVVADLDAQGLLSESNGAKVVFQDEFKNKEGEPLPVIIQKADGGYL 318

Query: 716 ----------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                 Y  DL Q +HF+ + + AK A  +    +  + +GFG 
Sbjct: 319 YATSDLAAMRYRSNVLNADRALYFVDLRQALHFQQVFKLAKTAKFVREEMS-FEHMGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + GED + FKTRSG  VKL +LL E   R+LD ++ KN   ++   EL+E  + V    +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLIDLLKEADTRALDLVRSKN--PDMDEAELAEIARVVGIASV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRASDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 112/188 (59%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+LD ++ KN   ++   EL+E  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALDLVRSKN--PDMDEAELAEIARVVGIASVKYADLSKNRASDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A I + A    +D+ ++     + LEHEKE  L   L +  +V+  +   
Sbjct: 464  PYLLYAYTRVAGIFKRA----QDVDLS--DATIILEHEKEKDLGTKLAQFGEVMTRMVGK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YL++++ AFS FY+ C  +  + E   K+    RLLL++ TAK +K+  ++L
Sbjct: 518  GQPHALCGYLFELAGAFSSFYEACPVLAAETEESKKS----RLLLSQLTAKTLKQGLNLL 573

Query: 1112 NIRTVHKM 1119
             + T+ +M
Sbjct: 574  GLETLERM 581



 Score = 49.3 bits (116), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 115/281 (40%), Gaps = 64/281 (22%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K        KNP +IAQ         L  N   +  ++K+E A PGF+
Sbjct: 41  GDFATNLAMMLTK-----AAGKNPREIAQL--------LIDNLPESAHVEKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN----GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           N F+       Q+  + +N    G++ PT      V+VD+SSPN+A++      HL S I
Sbjct: 88  NFFIDDNALANQLM-VALNSDHLGLELPTPQT---VVVDYSSPNLAKE--MHVGHLRSTI 141

Query: 165 HDILISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRD------YLSDV--FT 216
               + +A+  E     +   +     GT   M +   + +   +       LSD+  F 
Sbjct: 142 IGDSVVRAL--EFMGHKVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAKMELSDLENFY 199

Query: 217 HAVQVAFPELGDKTASVASTNEKYVHKF--GDFQCNDAMALCKIFKD------------- 261
            A +V F    D++A  A+   K V +   GD  CN    L + F D             
Sbjct: 200 RAAKVRF----DESAEFATRARKLVVELQSGDEYCNK---LWREFNDISLSHCHELYERL 252

Query: 262 ---------KGEKKNPFDIAQSIASVVTSELATNPSLAKVI 293
                    +GE     D+AQ +A +    L +  + AKV+
Sbjct: 253 GVSLTRADVRGESAYNSDLAQVVADLDAQGLLSESNGAKVV 293


>gi|365834464|ref|ZP_09375910.1| arginine--tRNA ligase [Hafnia alvei ATCC 51873]
 gi|364569241|gb|EHM46864.1| arginine--tRNA ligase [Hafnia alvei ATCC 51873]
          Length = 576

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 232/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  T A+  A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQALLSDKVTQALVAA----GAPANSEALVRQSAKAQFGDYQANGVMGAAKKLGIA-- 54

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +         T+  L  +  K+E+A PGF+N+FL   +  +Q++  +   
Sbjct: 55  ---PRQLAEQVL--------THLELDGIASKVEIAGPGFINIFLDPAWLAKQVEIALADE 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V+P T      ++VD+S+PN+AKEMHVGHLRSTIIGD   R LE+LGH+V+R N
Sbjct: 104 RLGVAAVKPQT------IVVDYSAPNVAKEMHVGHLRSTIIGDASVRTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNEHANEMDLSDLEAFYREAKKHYDEDAEFAERARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    QK Y RLNVTLT+    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCREMWRKLVDITMSQNQKNYQRLNVTLTKDDVMGESLYNSMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+  D V L H       FGM++   +D  
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVSLEH-----HMFGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTIKLSDLLDEAVER 400



 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 139/356 (39%), Positives = 194/356 (54%), Gaps = 58/356 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDASVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHANEMDL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+E+KK +DED  F +RA   VV LQ  D   ++ W  + D++    QK Y RL
Sbjct: 187 SDLEAFYREAKKHYDEDAEFAERARAYVVKLQGGDEYCREMWRKLVDITMSQNQKNYQRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNSMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG T+KLS+LLDE + R+   + +KN   +L+  EL++  + 
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTIKLSDLLDEAVERAGKLIAEKN--PDLSSDELAKLVEV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR++SI + AGI+ +
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVSSIFKRAGIDEQ 479



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ +L+  EL++  + V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDLSSDELAKLVEVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            +SI + AGI+ + L     S  + L  ++E ALA  L++  + +  V R+   H +C YL
Sbjct: 468  SSIFKRAGIDEQSL-----SGNIVLTEDREKALAARLIQFEETITQVAREGTPHVMCTYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY+ C  +  ++E +       RL LA  TA+ +K   D L I TV +M
Sbjct: 523  YDLAGLFSSFYEACPILTAESEEQ----RNSRLQLAALTARTLKTGLDTLGIETVERM 576



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 31/162 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  T A+  A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQALLSDKVTQALVAA----GAPANSEALVRQSAKAQFGDYQANGVMGAAKKLGIA-- 54

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +         T+  L  +  K+E A PGF+N+FL   +  +Q++  +   
Sbjct: 55  ---PRQLAEQVL--------THLELDGIASKVEIAGPGFINIFLDPAWLAKQVEIALADE 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
              V  V+P T      ++VD+S+PN+A++      HL S I
Sbjct: 104 RLGVAAVKPQT------IVVDYSAPNVAKE--MHVGHLRSTI 137


>gi|452748491|ref|ZP_21948270.1| arginyl-tRNA ligase [Pseudomonas stutzeri NF13]
 gi|452007665|gb|EMD99918.1| arginyl-tRNA ligase [Pseudomonas stutzeri NF13]
          Length = 579

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 220/405 (54%), Gaps = 46/405 (11%)

Query: 211 LSDVFTHAVQVAFPELGDK---------TASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           + D   H +Q A   L D+            V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQALVRLTDEGVLPAGLTPAIQVENTRDK---SHGDFASNIAMMLAKPAGL 57

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL-SRVYAGEQIKDI 320
           K     P D+A+ + + +       P  A+ I K+E+A PGF+N F  S   AG     +
Sbjct: 58  K-----PRDLAEKLITAL-------PQDAQ-ISKVEIAGPGFLNFFQNSDALAGRLEAAL 104

Query: 321 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
               +         RV++D SSPN+AKEMHVGHLRSTIIGD + R+LE+LG +V+R NHV
Sbjct: 105 ADPHLSVRKAGAAQRVVIDLSSPNLAKEMHVGHLRSTIIGDAVGRVLEHLGDEVIRQNHV 164

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGML+A+L++K          ++DL+ FY+ +K+RFDE   F  RA + VV LQ
Sbjct: 165 GDWGTQFGMLLAYLEEKPA---AAESELSDLEQFYRTAKQRFDESAEFADRARELVVKLQ 221

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLL 497
             D      W    D+S    QKIYDRLNV LT    +GES Y   +  +V  L +KGLL
Sbjct: 222 AGDAQCLGLWTRFNDISLSHCQKIYDRLNVKLTPADVKGESAYNADLAGIVESLREKGLL 281

Query: 498 ELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
             D+G + ++       +   +P+ + K+ GG+ Y T+DLAA+R R ++  AD ++Y  D
Sbjct: 282 TEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLYATTDLAAMRYRSQQLHADRVLYFVD 341

Query: 553 LGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
             Q +HF++  E       ++R   ++ H+ ++L H+G +GT  G
Sbjct: 342 QRQALHFQMAFE-------VARRAGFV-HEGMQLEHMG-FGTMNG 377



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 188/345 (54%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R+LE+LG +V+R NHVGDWGTQFGML+A+L++K          ++DL+ FY
Sbjct: 140 STIIGDAVGRVLEHLGDEVIRQNHVGDWGTQFGMLLAYLEEKPA---AAESELSDLEQFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA + VV LQ  D      W    D+S    QKIYDRLNV LT  
Sbjct: 197 RTAKQRFDESAEFADRARELVVKLQAGDAQCLGLWTRFNDISLSHCQKIYDRLNVKLTPA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   +  +V  L +KG L+                       + +K G     
Sbjct: 257 DVKGESAYNADLAGIVESLREKGLLTEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF++  E A++AG ++    +++ +GFG +
Sbjct: 317 ATTDLAAMRYRSQQLHADRVLYFVDQRQALHFQMAFEVARRAGFVHEG-MQLEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+   +K KN   +L   EL +  +AV    +K
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLDEAEQRAYALVKGKN--PDLDEAELRQIARAVGISAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML   GNTA YLLYAYTR+AS+ R  G
Sbjct: 434 YADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYTRVASVFRKLG 478



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 97/167 (58%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ +L   EL +  +AV    +KYADLS +R  DY F+F+ ML   GNTA YLLYAYT
Sbjct: 409  KGKNPDLDEAELRQIARAVGISAVKYADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+ R  G   ++   A Q   + LE E+E ALA  L +  +VL  V+     H LC 
Sbjct: 469  RVASVFRKLGKGIDE--TAGQ---IQLEAEQELALAAKLAQFGEVLNSVSEKGEPHLLCA 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY++C  +  + E + ++    RL LA  T K +K+
Sbjct: 524  YLYDLAGLFSSFYEHCPILSAEQEEQKRS----RLRLAALTGKTLKQ 566



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 26/148 (17%)

Query: 15  LSDVFTHAVQVAFPELGDK---------TASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           + D   H +Q A   L D+            V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQALVRLTDEGVLPAGLTPAIQVENTRDK---SHGDFASNIAMMLAKPAGL 57

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-SRVYAGEQMKDI 124
           K     P D+A+ + + +       P  A+ I K+E A PGF+N F  S   AG     +
Sbjct: 58  K-----PRDLAEKLITAL-------PQDAQ-ISKVEIAGPGFLNFFQNSDALAGRLEAAL 104

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
               +         RV++D SSPN+A++
Sbjct: 105 ADPHLSVRKAGAAQRVVIDLSSPNLAKE 132


>gi|386815757|ref|ZP_10102975.1| arginyl-tRNA synthetase [Thiothrix nivea DSM 5205]
 gi|386420333|gb|EIJ34168.1| arginyl-tRNA synthetase [Thiothrix nivea DSM 5205]
          Length = 579

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 199/364 (54%), Gaps = 28/364 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++R  L D  T A+      LG      A        +FGD+Q N  MA  K  K    
Sbjct: 1   MNIRQLLDDRITAALH----SLGAPETVSAIVKPSARPEFGDYQANGVMAAAKQLK---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP ++A  +  V+         L+ + +K+EVA PGF+N+ L   +  E +      G
Sbjct: 53  -TNPRELATRLLEVL--------DLSDMAEKLEVAGPGFINIHLKNAWLAESLGSSPEKG 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                 +    ++VD+S PN+AKEMHVGHLRSTIIGD ++R+L + GH V+R NHVGDWG
Sbjct: 104 RLGGVSST---IVVDYSGPNLAKEMHVGHLRSTIIGDAVARVLAFQGHKVIRQNHVGDWG 160

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIAH+          S  ++DL+AFY+E+KKRFD++  F K A   VV LQ  D 
Sbjct: 161 TQFGMLIAHMVSLQAQGGELSMQLSDLEAFYREAKKRFDDEPDFAKTARDYVVKLQSGDA 220

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDD 501
           +  K W+   D+S    + +Y+ L V LT    + ES Y   +  +V  L+  GLL  D 
Sbjct: 221 ECLKLWQQFIDISLHHCEDVYECLGVQLTRADVKPESAYNDDLANIVSELQANGLLVEDQ 280

Query: 502 GRKIMWGED----RGSI-PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G +  + ++     GSI P+ + KSDGG+ Y T+DLAA+R R     AD ++Y TD  Q 
Sbjct: 281 GAQCAFLDEFKNKDGSITPIIVQKSDGGYLYATTDLAALRYRSGSLNADRVLYFTDARQS 340

Query: 557 VHFR 560
           +HF+
Sbjct: 341 LHFQ 344



 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/342 (38%), Positives = 180/342 (52%), Gaps = 53/342 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+L + GH V+R NHVGDWGTQFGMLIAH+          S  ++DL+AFY
Sbjct: 132 STIIGDAVARVLAFQGHKVIRQNHVGDWGTQFGMLIAHMVSLQAQGGELSMQLSDLEAFY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KKRFD++  F K A   VV LQ  D +  K W+   D+S    + +Y+ L V LT  
Sbjct: 192 REAKKRFDDEPDFAKTARDYVVKLQSGDAECLKLWQQFIDISLHHCEDVYECLGVQLTRA 251

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
             + ES Y   +  +V  L+  G L                                   
Sbjct: 252 DVKPESAYNDDLANIVSELQANGLLVEDQGAQCAFLDEFKNKDGSITPIIVQKSDGGYLY 311

Query: 707 ------SLTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                 +L  + G      ++Y TD  Q +HF+ +   A+KAG +   +  ++ + FG +
Sbjct: 312 ATTDLAALRYRSGSLNADRVLYFTDARQSLHFQQVFTLARKAGFVR-EEMALEHMPFGNM 370

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LGED K FKTR+G TVKL+ELL E   R+   + +KN   EL   E  +    V  G +K
Sbjct: 371 LGEDGKPFKTRTGGTVKLAELLTEAQERAFTLVSEKN--PELPEAERQDIAHKVGIGAVK 428

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           YADLS NRN DY+F+++ ML   GNTA YL YAY RI SI R
Sbjct: 429 YADLSKNRNSDYIFNWESMLSFEGNTAPYLQYAYARIRSIFR 470



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 101/188 (53%), Gaps = 6/188 (3%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   + +KN   EL   E  +    V  G +KYADLS NRN DY+F+++ ML   GNTA
Sbjct: 398  RAFTLVSEKN--PELPEAERQDIAHKVGIGAVKYADLSKNRNSDYIFNWESMLSFEGNTA 455

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YL YAY RI SI R     S  L ++ +   +SL+   E  LA  LL+  +    V ++
Sbjct: 456  PYLQYAYARIRSIFRKR-TPSPTLPLSGEGAKISLQEAAERTLAVKLLQFAEATDSVAKE 514

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               +HLC YLY+++  F  FY+ C  ++   EG  + V   RL LAE TA+ ++    +L
Sbjct: 515  GLPNHLCTYLYELAGNFMSFYEACPILK---EGVAEEVRNSRLQLAELTAQTLQAGLGLL 571

Query: 1112 NIRTVHKM 1119
             I  + +M
Sbjct: 572  GIGVMERM 579



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 22/166 (13%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++R  L D  T A+      LG      A        +FGD+Q N  MA  K  K    
Sbjct: 1   MNIRQLLDDRITAALH----SLGAPETVSAIVKPSARPEFGDYQANGVMAAAKQLK---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP ++A  +  V+         L+ + +K+E A PGF+N+ L   +  E +      G
Sbjct: 53  -TNPRELATRLLEVL--------DLSDMAEKLEVAGPGFINIHLKNAWLAESLGSSPEKG 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIA 174
                 +    ++VD+S PN+A++      HL S I    +++ +A
Sbjct: 104 RLGGVSST---IVVDYSGPNLAKE--MHVGHLRSTIIGDAVARVLA 144


>gi|238919488|ref|YP_002933003.1| arginyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
 gi|259511644|sp|C5B832.1|SYR_EDWI9 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|238869057|gb|ACR68768.1| arginyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 577

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/354 (40%), Positives = 191/354 (53%), Gaps = 57/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+       T    +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLEKVQGSSETGDMAL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+AFY+E+KK +DED  F +RA   VV LQ  D   ++ W  + D++ R  Q+ YDRL
Sbjct: 188 ADLEAFYREAKKHYDEDAAFAERARGYVVKLQGGDEYCREMWRKLVDITMRQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   +  +V  L+ KG                         + + K
Sbjct: 248 NVTLTDDDVMGESLYNPMLPGIVADLKAKGLATESEGATVVFLNEFRNKEGEPMGVIVQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       I+Y  D  Q  H        +KAG + P+   ++
Sbjct: 308 KDGGYLYTTTDIACAKYRYETLGANRILYYIDSRQHQHLMQAWTIVRKAGYV-PDSVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KL++LLDE + R+   +  KN   EL+  EL    + 
Sbjct: 367 HHMFGMMLGKDGKPFKTRAGGTIKLADLLDEAIERAAKLIAAKN--PELSGDELKALVEV 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           V  G +KYADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ASI + AGI+
Sbjct: 425 VGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGID 478



 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 159/433 (36%), Positives = 226/433 (52%), Gaps = 56/433 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++++ +SD  T A+  A    G    S A        +FGD+Q N  M+  K       
Sbjct: 1   MNIQEIISDKVTQALVAA----GAPAGSEALVRPSAKVQFGDYQANGIMSAAKKMG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD----- 319
              P  +A+ + +        N +L  +  K+E+A PGF+N+FL   +   Q        
Sbjct: 53  -LPPRQLAEQVVA--------NLALDGIASKVEIAGPGFINIFLDAAWLAAQADAALADP 103

Query: 320 -IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + V  V+P T      ++VD+S+PN+AKEMHVGHLRSTIIGD   R LE+LGH+V+R N
Sbjct: 104 RLGVARVEPQT------IVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+       T    +ADL+AFY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLEKVQGSSETGDMALADLEAFYREAKKHYDEDAAFAERARGYVVK 217

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++ R  Q+ YDRLNVTLT+    GES Y   +  +V  L+ KG
Sbjct: 218 LQGGDEYCREMWRKLVDITMRQNQRNYDRLNVTLTDDDVMGESLYNPMLPGIVADLKAKG 277

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   + K DGG+ Y T+D+A  + R E   A+ I
Sbjct: 278 LATESEGATVVFLNEFRNKEGEPMGVI---VQKKDGGYLYTTTDIACAKYRYETLGANRI 334

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+  D V L H       FGM++      F
Sbjct: 335 LYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVSLEH-----HMFGMMLGKDGKPF 381

Query: 608 PDYLTKSPPIADL 620
                 +  +ADL
Sbjct: 382 KTRAGGTIKLADL 394



 Score =  136 bits (342), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ EL+  EL    + V  G +KYADLS NR  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 409  KNPELSGDELKALVEVVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 468

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            ASI + AGI+   L+ A     ++L  E+E ALA  L++  + ++ V R+   H +C YL
Sbjct: 469  ASIFKRAGIDENTLQGA-----ITLTEEREKALATRLMQFEETILSVAREGTPHVMCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY+ C  +  + E    +V   RL LA  TA+ +K   D L I+TV +M
Sbjct: 524  YEVAGLFSSFYEACPILNAEEE----SVRASRLKLAALTARTLKTGLDTLGIKTVERM 577



 Score = 46.2 bits (108), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 31/162 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++++ +SD  T A+  A    G    S A        +FGD+Q N  M+  K       
Sbjct: 1   MNIQEIISDKVTQALVAA----GAPAGSEALVRPSAKVQFGDYQANGIMSAAKKMG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD----- 123
              P  +A+ + +        N +L  +  K+E A PGF+N+FL   +   Q        
Sbjct: 53  -LPPRQLAEQVVA--------NLALDGIASKVEIAGPGFINIFLDAAWLAAQADAALADP 103

Query: 124 -IIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
            + V  V+P T      ++VD+S+PN+A++      HL S I
Sbjct: 104 RLGVARVEPQT------IVVDYSAPNVAKE--MHVGHLRSTI 137


>gi|409421896|ref|ZP_11259018.1| arginyl-tRNA ligase [Pseudomonas sp. HYS]
          Length = 578

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 147/364 (40%), Positives = 211/364 (57%), Gaps = 39/364 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K     G K  P D+A+ + + + ++        + + K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKLIAALPAD--------EQVSKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F +      ++   + +   GV+     +K  V+VD S+PN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQNTQALASRLDAALADAKLGVKKAGPQQK--VVVDLSAPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            +SR+LE+LG DV+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY+ +KKR
Sbjct: 146 AVSRVLEFLGDDVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFYRAAKKR 201

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE E F  RA   VV LQ  DP+  K W    D+S    QK Y+ LNV LT     GES
Sbjct: 202 FDESEAFADRARGLVVKLQAGDPECLKLWTRFKDISLSHCQKTYELLNVKLTMADVMGES 261

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLA 533
            Y   +  +V  L+ KGLL    G + ++ E+  +     +P+ + K+DGG+ Y T+DLA
Sbjct: 262 AYNDDLANVVNDLKAKGLLVESKGAQCVFLEEFKTAEGEPLPVIVQKADGGYLYATTDLA 321

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
           A+R R    KAD  +Y  D  Q +HF  + E       ++R   ++GH  +++ H+G +G
Sbjct: 322 AVRYRSNVLKADRALYFVDQRQALHFNQVFE-------VARRAGFVGHP-MQMEHMG-FG 372

Query: 594 TQFG 597
           T  G
Sbjct: 373 TMNG 376



 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 141/345 (40%), Positives = 186/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD +SR+LE+LG DV+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDAVSRVLEFLGDDVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  DP+  K W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEAFADRARGLVVKLQAGDPECLKLWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
              GES Y   +  +V  L+ KG L  +K    V++                        
Sbjct: 256 DVMGESAYNDDLANVVNDLKAKGLLVESKGAQCVFLEEFKTAEGEPLPVIVQKADGGYLY 315

Query: 718 --TDLG---------------------QGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
             TDL                      Q +HF  + E A++AG +  +  +M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFEVARRAGFVG-HPMQMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN   EL   +L    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAKERAYALVKEKN--PELAEADLRAIGEVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   +L    + V  G +KYADLS +R  DY F+F+ ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPELAEADLRAIGEVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G + +++        + L+  +E  LA  L +  ++L  V      H LC 
Sbjct: 468  RVAGVFRKLGKDFDEV-----DGQIILQAPQEQDLAARLAQFGEILNNVAEKGTPHVLCT 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  D   + ++    RL LA  T + +K+
Sbjct: 523  YLYDVAGLFSSFYENCPILAADTPEQQQS----RLRLAALTGRTLKQ 565


>gi|423124541|ref|ZP_17112220.1| arginyl-tRNA synthetase [Klebsiella oxytoca 10-5250]
 gi|376399986|gb|EHT12599.1| arginyl-tRNA synthetase [Klebsiella oxytoca 10-5250]
          Length = 577

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 149/392 (38%), Positives = 210/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E +   + +   GV  P       V+VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAENVSSALKSERLGVAQPQAQT---VVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYNRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYENLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/344 (39%), Positives = 185/344 (53%), Gaps = 54/344 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYENLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKA 474



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 104/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A  +   L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADTDESALAAA----PVVITEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCSYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E +   + +   GV  P       V+VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAENVSSALKSERLGVAQPQAQT---VVVDYSAPNVAKE 127


>gi|366157433|ref|ZP_09457295.1| arginyl-tRNA synthetase [Escherichia sp. TW09308]
          Length = 577

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 213/392 (54%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL  V+  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPVFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINED 479



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN + L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEDQLAAA----PVVIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL  V+  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPVFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|238783286|ref|ZP_04627311.1| Arginyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238715879|gb|EEQ07866.1| Arginyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 576

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 231/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEAQVRQSAKAQFGDYQANGVMAVAKKMG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK------ 318
              P  +A+ +  ++         L  +  K+E+A PGF+N+FL R +   +++      
Sbjct: 53  -MQPRQLAEKVIELL--------DLEGIASKVEIAGPGFINIFLDRQWVASKVEFALTAP 103

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + V  V+P T      ++VD+S+PN+AK+MHVGHLRSTIIGD   R LE+LGH V+R N
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLEFLGHHVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F  RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNESASDMDLSDLELFYQQAKKTYDEDEEFALRARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  YDRLNVTLT     GES Y   +  +V  L+ KG
Sbjct: 217 LQSGDEYCRQMWRKLVDITMAQNQIAYDRLNVTLTTDDVMGESLYNAMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    DG  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESDGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  
Sbjct: 334 LYYIDTRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTVKLSDLLDEAIER 400



 Score =  219 bits (559), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 188/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAYLE-KMQNESASDMDL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F  RA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFALRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQIAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT     GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTTDDVMGESLYNAMLPGIVADLKAKGLAVESDGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDTRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +  +A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAIERAGKLIAEKN--PDMPADELKQVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ + AG++      
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFKRAGVDENSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +  +AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVVEAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ + AG++   L     + P+ +  ++E ALA  LL+  +V+  V R+   H +C YL
Sbjct: 468  VSVFKRAGVDENSL-----TLPLVITEDREAALATRLLQFEEVITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +   +E     +   RL LA  TAK +K+  D L IRTV +M
Sbjct: 523  YDVAGLFSSFYEHCQILNAASE----EIRQSRLKLAMLTAKTLKQGLDTLGIRTVERM 576



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEAQVRQSAKAQFGDYQANGVMAVAKKMG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK------ 122
              P  +A+ +  ++         L  +  K+E A PGF+N+FL R +   +++      
Sbjct: 53  -MQPRQLAEKVIELL--------DLEGIASKVEIAGPGFINIFLDRQWVASKVEFALTAP 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + V  V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQ 127


>gi|423103686|ref|ZP_17091388.1| arginyl-tRNA synthetase [Klebsiella oxytoca 10-5242]
 gi|376385328|gb|EHS98049.1| arginyl-tRNA synthetase [Klebsiella oxytoca 10-5242]
          Length = 577

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 212/392 (54%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L+ + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLSGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E +   + +   GV  P       V+VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAENVSSALKSERLGVAQPQAQT---VVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYNRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   A+ ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYENLHAERVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 187/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYENLHAERVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPTDELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADID 477



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPTDELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L  A    PV +  E+E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDERALAAA----PVVITEEREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCSYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L+ + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLSGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E +   + +   GV  P       V+VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAENVSSALKSERLGVAQPQAQT---VVVDYSAPNVAKE 127


>gi|238751578|ref|ZP_04613068.1| Arginyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238710140|gb|EEQ02368.1| Arginyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 576

 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 156/443 (35%), Positives = 232/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L  +   +E+A PGF+N+FL R +   +++  +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLDGIASNVEIAGPGFINIFLDRQWVASKVEQALTAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V+P T      ++VD+S+PN+AK+MHVGHLRSTIIGD   R LE+LGH+V+R N
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFAQRARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  YDRLNVTLT     GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRQMWRKLVDITMAQNQIAYDRLNVTLTTDDVMGESLYNSMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  
Sbjct: 334 LYYIDTRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTVKLSDLLDEAIER 400



 Score =  222 bits (566), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 190/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F +RA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFAQRARAYVVKLQGGDEYCRQMWRKLVDITMAQNQIAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT     GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTTDDVMGESLYNSMLPGIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDTRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +  +A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAIERAGKLIAEKN--PDMPADELKQVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ + AGI+      
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFKRAGIDENSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 106/178 (59%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +  +AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVVEAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ + AGI+   L     + P+ +  ++E ALA  LL+  +V+  V R+   H +C YL
Sbjct: 468  VSVFKRAGIDENSL-----TLPLVITEDREAALATRLLQFEEVITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  + E   ++    RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCPILNAENEESRQS----RLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++         L  +   +E A PGF+N+FL R +   +++  +   
Sbjct: 53  -MQPRQLAEKVIELL--------DLDGIASNVEIAGPGFINIFLDRQWVASKVEQALTAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              V  V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQ 127


>gi|269138777|ref|YP_003295478.1| arginyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|387867456|ref|YP_005698925.1| arginyl-tRNA synthetase [Edwardsiella tarda FL6-60]
 gi|267984438|gb|ACY84267.1| arginyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304558769|gb|ADM41433.1| Arginyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 577

 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/354 (40%), Positives = 191/354 (53%), Gaps = 57/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+       T    +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLEKVQGSSKTGDMAL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+AFY+E+KK +DED  F +RA   VV LQ  D   ++ W  + D++ R  Q+ YDRL
Sbjct: 188 ADLEAFYREAKKHYDEDAAFAERARGYVVKLQGGDEYCREMWRKLVDITMRQNQRNYDRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   +  +V  L+ KG                         + + K
Sbjct: 248 NVTLTDDDVMGESLYNPMLPGIVADLKAKGLATESEGATVVFLDEFKNKEGEPMGVIVQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       I+Y  D  Q  H        +KAG + P+   ++
Sbjct: 308 KDGGYLYTTTDIACAKYRYETLGANRILYYIDSRQHQHLMQAWAIVRKAGYV-PDSVSLE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KL++LLDE + R+   +  KN   EL+  EL    + 
Sbjct: 367 HHMFGMMLGKDGKPFKTRAGGTIKLADLLDEAIERAAKLIAAKN--PELSGDELKALVEV 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           V  G +KYADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ASI + AGI+
Sbjct: 425 VGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGID 478



 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 157/430 (36%), Positives = 226/430 (52%), Gaps = 50/430 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  +SD  T A+  A    G    S A        +FGD+Q N  MA  K       
Sbjct: 1   MNIQAIISDKVTQALVAA----GAPADSEALVRPSAKVQFGDYQANGIMAAAKKMG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD----- 319
              P  +A+ + +        N +L  +  K+E+A PGF+N+FL   +   Q        
Sbjct: 53  -LPPRQLAEQVVA--------NLALDGIASKVEIAGPGFINIFLDAAWLAAQADAALADP 103

Query: 320 -IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + V  V+P T      ++VD+S+PN+AKEMHVGHLRSTIIGD   R LE+LGH+V+R N
Sbjct: 104 RLGVARVEPQT------IVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+       T    +ADL+AFY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLEKVQGSSKTGDMALADLEAFYREAKKHYDEDAAFAERARGYVVK 217

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++ R  Q+ YDRLNVTLT+    GES Y   +  +V  L+ KG
Sbjct: 218 LQGGDEYCREMWRKLVDITMRQNQRNYDRLNVTLTDDDVMGESLYNPMLPGIVADLKAKG 277

Query: 496 LLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L    +G  +++ +   ++   PM ++  K DGG+ Y T+D+A  + R E   A+ I+Y 
Sbjct: 278 LATESEGATVVFLDEFKNKEGEPMGVIVQKKDGGYLYTTTDIACAKYRYETLGANRILYY 337

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q  H  L++   I+     R   Y+  D V L H       FGM++      F   
Sbjct: 338 IDSRQ--HQHLMQAWAIV-----RKAGYV-PDSVSLEH-----HMFGMMLGKDGKPFKTR 384

Query: 611 LTKSPPIADL 620
              +  +ADL
Sbjct: 385 AGGTIKLADL 394



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ EL+  EL    + V  G +KYADLS NR  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 409  KNPELSGDELKALVEVVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 468

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            ASI + AGI+   L+ A     ++L  ++E ALA  L++  + ++ V R+   H +C YL
Sbjct: 469  ASIFKRAGIDENALQGA-----ITLTEDREKALATRLMQFEETILSVAREGTPHVMCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY+ C  +  D E    +V   RL LA  TA+ +K   D L I+TV +M
Sbjct: 524  YEVAGLFSSFYEACPILNADEE----SVCASRLKLAALTARTLKTGLDTLGIKTVERM 577



 Score = 45.8 bits (107), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 44/214 (20%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  +SD  T A+  A    G    S A        +FGD+Q N  MA  K       
Sbjct: 1   MNIQAIISDKVTQALVAA----GAPADSEALVRPSAKVQFGDYQANGIMAAAKKMG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD----- 123
              P  +A+ + +        N +L  +  K+E A PGF+N+FL   +   Q        
Sbjct: 53  -LPPRQLAEQVVA--------NLALDGIASKVEIAGPGFINIFLDAAWLAAQADAALADP 103

Query: 124 -IIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI-------------HDILI 169
            + V  V+P T      ++VD+S+PN+A++      HL S I             H+++ 
Sbjct: 104 RLGVARVEPQT------IVVDYSAPNVAKE--MHVGHLRSTIIGDAAVRTLEFLGHNVIR 155

Query: 170 SKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSD 203
           +  + +   + G+  +   + +G++K  ++ ++D
Sbjct: 156 ANHVGDWGTQFGMLIAYLEKVQGSSKTGDMALAD 189


>gi|51596355|ref|YP_070546.1| arginyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|81639440|sp|Q66AV1.1|SYR_YERPS RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|51589637|emb|CAH21267.1| arginyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
          Length = 576

 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 233/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L  +  KIE+A PGF+N+FL R +  E+++  +   
Sbjct: 53  -MQPRQLAERVVELL--------DLTGIASKIEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V+P T      ++VD+S+PN+AK+MHVGHLRSTIIGD   R L +LGH+V+R N
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLAFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F  RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFALRARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   + ++V  L+ KG
Sbjct: 217 LQSGDEYCRQMWRKLVDITMAQNQVAYDRLNVTLTKDDVMGESLYNAMLPEIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD I
Sbjct: 277 LAVESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRI 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTVKLSDLLDEAVER 400



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 188/354 (53%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R L +LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F  RA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFALRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQVAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNAMLPEIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       I+Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRILYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +   A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAVERAGKLIAEKN--PDMPADELKQVINA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AG++
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFRRAGVD 477



 Score =  133 bits (335), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +   AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVINAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG++   L     + P+ +  ++E ALA  LL+  +++  V R+   H +C YL
Sbjct: 468  VSVFRRAGVDETSL-----TLPLVITEDREAALATRLLQFEEIITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  ++E     +   RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNAESE----EIRQSRLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK------ 122
              P  +A+ +  ++         L  +  KIE A PGF+N+FL R +  E+++      
Sbjct: 53  -MQPRQLAERVVELL--------DLTGIASKIEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + V  V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQ 127


>gi|350571967|ref|ZP_08940279.1| arginine--tRNA ligase [Neisseria wadsworthii 9715]
 gi|349790845|gb|EGZ44743.1| arginine--tRNA ligase [Neisseria wadsworthii 9715]
          Length = 572

 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 147/365 (40%), Positives = 204/365 (55%), Gaps = 37/365 (10%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGDFQ N  M   K       K NP ++AQ +A      LA N     VI+  EVA PGF
Sbjct: 35  FGDFQINGVMGAAK-----QAKTNPRELAQKVADA----LANNA----VIEHAEVAGPGF 81

Query: 304 VNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIG 360
           +N+ L   +    ++  + N   GVQ  T  +   V++D+SSPN+AKEMHVGHLRS+IIG
Sbjct: 82  INLRLRAEFLANGLRSALANERLGVQVVT--EPQTVVIDYSSPNLAKEMHVGHLRSSIIG 139

Query: 361 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK 420
           D+I+R+L +LGH V+R NHVGDWGTQFGML+A++ ++          ++DL+ FY+E+K 
Sbjct: 140 DSIARVLGFLGHKVIRQNHVGDWGTQFGMLVAYMVEQQKG--NAGFELSDLEQFYREAKI 197

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDED  F   A   VV LQ  D      W+   D+S    Q +YD L + LT     GE
Sbjct: 198 RFDEDAAFADIARDYVVKLQGGDETVLALWKQFVDISLSHAQNVYDALGLLLTPDDVAGE 257

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDL 532
           S Y   ++ +V  L  +GL   DDG K+++ E+     G     IV K  GGF Y ++DL
Sbjct: 258 SKYNNDLQAVVDELTAQGLAVEDDGAKVVFLEEFQNKEGEPAAFIVQKQGGGFLYSSTDL 317

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           A IR R+ +  AD ++YV D  Q +HF+ L        T++R   +L  +VV   H+  +
Sbjct: 318 ACIRYRVNQLNADRLLYVVDARQALHFQQLF-------TVARKAGWLSENVVA-EHIA-F 368

Query: 593 GTQFG 597
           GT  G
Sbjct: 369 GTMMG 373



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 182/345 (52%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+I+R+L +LGH V+R NHVGDWGTQFGML+A++ ++          ++DL+ FY
Sbjct: 135 SSIIGDSIARVLGFLGHKVIRQNHVGDWGTQFGMLVAYMVEQQKG--NAGFELSDLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K RFDED  F   A   VV LQ  D      W+   D+S    Q +YD L + LT  
Sbjct: 193 REAKIRFDEDAAFADIARDYVVKLQGGDETVLALWKQFVDISLSHAQNVYDALGLLLTPD 252

Query: 684 --RGESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLG----- 713
              GES Y   ++ +V  L  +G                          + +K G     
Sbjct: 253 DVAGESKYNNDLQAVVDELTAQGLAVEDDGAKVVFLEEFQNKEGEPAAFIVQKQGGGFLY 312

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++YV D  Q +HF+ L   A+KAG L+ N    + + FG +
Sbjct: 313 SSTDLACIRYRVNQLNADRLLYVVDARQALHFQQLFTVARKAGWLSENVV-AEHIAFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL ELLDE + R+   ++DKN   EL     +   + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVELLDEAVERATALVQDKN--AELDAKAAAGIGRVVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 430 YADLSKNRTSDYVFDWDNMLSFEGNTAPYLQYAYTRVQSVFRRAG 474



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 102/190 (53%), Gaps = 14/190 (7%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            + R+   ++DKN   EL     +   + V  G +KYADLS NR  DYVF +D ML   GN
Sbjct: 397  VERATALVQDKN--AELDAKAAAGIGRVVGIGAVKYADLSKNRTSDYVFDWDNMLSFEGN 454

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA YL YAYTR+ S+ R AG           + PV L    E  LA  LL+  DVL  V+
Sbjct: 455  TAPYLQYAYTRVQSVFRRAG------EWDTTAAPV-LNETLEKQLAVELLKFEDVLDNVS 507

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
                 H+L  YLY ++T FS FY++C  ++  AEG+++     RL LA+ T   +K   +
Sbjct: 508  ETAYPHYLAAYLYQVATLFSRFYESCPILK--AEGEVRNT---RLQLAKLTGNTLKTGLE 562

Query: 1110 ILNIRTVHKM 1119
            +L I T+  M
Sbjct: 563  LLGIETLEVM 572



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 20/120 (16%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGDFQ N  M   K       K NP ++AQ +A      LA N     VI+  E A PGF
Sbjct: 35  FGDFQINGVMGAAK-----QAKTNPRELAQKVADA----LANNA----VIEHAEVAGPGF 81

Query: 108 VNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           +N+ L   +    ++  + N   GVQ  T  +   V++D+SSPN+A++      HL S I
Sbjct: 82  INLRLRAEFLANGLRSALANERLGVQVVT--EPQTVVIDYSSPNLAKE--MHVGHLRSSI 137


>gi|108811686|ref|YP_647453.1| arginyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|229901967|ref|ZP_04517088.1| arginyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|384414773|ref|YP_005624135.1| arginyl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
 gi|122980195|sp|Q1CJH7.1|SYR_YERPN RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|108775334|gb|ABG17853.1| arginyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|229680863|gb|EEO76958.1| arginyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|320015277|gb|ADV98848.1| arginyl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 576

 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 233/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L  +  KIE+A PGF+N+FL R +  E+++  +   
Sbjct: 53  -MQPRQLAERVVELL--------DLTGIASKIEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V+P T      ++VD+S+PN+AK+MHVGHLRSTIIGD   R L +LGH+V+R N
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLAFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F  RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFSLRARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   + ++V  L+ KG
Sbjct: 217 LQSGDEYCRQMWRKLVDITMAQNQVAYDRLNVTLTKDDVMGESLYNAMLPEIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD I
Sbjct: 277 LAVESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRI 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTVKLSDLLDEAVER 400



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 188/354 (53%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R L +LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F  RA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFSLRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQVAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNAMLPEIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       I+Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRILYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +   A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAVERAGKLIAEKN--PDMPADELKQVINA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AG++
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFRRAGVD 477



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 104/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +   AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVINAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG++   L     + P+ +  ++E  LA  LL+  +++  V R+   H +C YL
Sbjct: 468  VSVFRRAGVDETSL-----TLPLVVTEDREATLATRLLQFEEIITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  ++E     +   RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNAESE----EIRQSRLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK------ 122
              P  +A+ +  ++         L  +  KIE A PGF+N+FL R +  E+++      
Sbjct: 53  -MQPRQLAERVVELL--------DLTGIASKIEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + V  V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQ 127


>gi|317048536|ref|YP_004116184.1| arginyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316950153|gb|ADU69628.1| arginyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 576

 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 195/349 (55%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  ++  +   +ADL+AFY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAYLEKQQSEH-HEDIALADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K+ +DEDE F +RA   VV LQ  D   +  W+ + D++    QK+YDRLNVTLT +
Sbjct: 194 REAKRTYDEDEAFAERARGYVVKLQGGDEYCRTMWKKLVDITMSQNQKVYDRLNVTLTRK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVADLKEKGLAVISEGATVVFLDEFKNKEGEPMGVIVQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H +      +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLQQAWTIVRKAGYV-PESVPLEHHAFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T+KL++LLDE + R+L  + +KN   E++  EL    + V  G +K
Sbjct: 373 LGKDGRPFKTRSGGTIKLADLLDEAVERALALVSEKN--PEMSSDELQALAEVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI ++
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIAAD 479



 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/392 (36%), Positives = 218/392 (55%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K        + P  +A+ +          +  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAEQVIQ--------HLDLQGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII------VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL R +  +Q    +      V+ V   T      +++D+S+PN+AKEMHVGH+RS
Sbjct: 82  FINIFLDRQWLADQAAQALTLPRLGVSSVAAQT------IVIDYSAPNVAKEMHVGHVRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  ++  +   +ADL+AFY+
Sbjct: 136 TIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAYLEKQQSEH-HEDIALADLEAFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER- 475
           E+K+ +DEDE F +RA   VV LQ  D   +  W+ + D++    QK+YDRLNVTLT + 
Sbjct: 195 EAKRTYDEDEAFAERARGYVVKLQGGDEYCRTMWKKLVDITMSQNQKVYDRLNVTLTRKD 254

Query: 476 --GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYD 528
             GES Y   +  +V  L++KGL  + +G  +++ ++   +   PM ++  K DGG+ Y 
Sbjct: 255 VMGESLYNDMLPGIVADLKEKGLAVISEGATVVFLDEFKNKEGEPMGVIVQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H   L+++     TI R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQHQH---LQQAW----TIVRKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 368 A------FGMMLGKDGRPFKTRSGGTIKLADL 393



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 109/191 (57%), Gaps = 11/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+L  + +KN   E++  EL    + V  G +KYADLS +R  DY+F +D ML   G
Sbjct: 397  AVERALALVSEKN--PEMSSDELQALAEVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AGI ++ L+       + L  E+E  LA  LL+  DV+  V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAGIAADSLQ-----GEIVLSEEREAQLATRLLQFEDVITQV 509

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             RD   H +C YLYD++  FS FY++C  +  + E     V   RL LA  TAK +K+  
Sbjct: 510  ARDGTPHVMCAYLYDLAGLFSGFYEHCPILTAEEE----QVRNSRLQLAALTAKTLKQGL 565

Query: 1109 DILNIRTVHKM 1119
            D L I+TV +M
Sbjct: 566  DTLGIKTVERM 576



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 25/112 (22%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K        + P  +A+ +          +  L  +  K+E A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAEQVIQ--------HLDLQGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII------VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL R +  +Q    +      V+ V   T      +++D+S+PN+A++
Sbjct: 82  FINIFLDRQWLADQAAQALTLPRLGVSSVAAQT------IVIDYSAPNVAKE 127


>gi|186895396|ref|YP_001872508.1| arginyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|238691368|sp|B2K312.1|SYR_YERPB RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|186698422|gb|ACC89051.1| arginyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
          Length = 576

 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 233/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK------ 318
              P  +A+ +  ++         L  +  KIE+A PGF+N+FL R +  E+++      
Sbjct: 53  -MQPRQLAERVVELL--------DLTGIASKIEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + V  V+P T      ++VD+S+PN+AK+MHVGHLRSTIIGD   R L +LGH+V+R N
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLAFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F  RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFALRARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   + ++V  L+ KG
Sbjct: 217 LQSGDEYCRQMWRKLVDITMAQNQVAYDRLNVTLTKDDVMGESLYNAMLPEIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD I
Sbjct: 277 LAVESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRI 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTVKLSDLLDEAVER 400



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 188/354 (53%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R L +LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F  RA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFALRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQVAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNAMLPEIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       I+Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRILYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +   A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAVERAGKLIAEKN--PDMPADELKQVINA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AG++
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFRRAGVD 477



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +   AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVINAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG++   L     + P+ +  ++E ALA  LL+  +++  V R+   H +C YL
Sbjct: 468  VSVFRRAGVDETSL-----TLPLVITEDREAALATRLLQFEEIITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  ++E     +   RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDVAGLFSSFYEHCQILNAESE----EIRQSRLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK------ 122
              P  +A+ +  ++         L  +  KIE A PGF+N+FL R +  E+++      
Sbjct: 53  -MQPRQLAERVVELL--------DLTGIASKIEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + V  V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQ 127


>gi|22126152|ref|NP_669575.1| arginyl-tRNA synthetase [Yersinia pestis KIM10+]
 gi|45441691|ref|NP_993230.1| arginyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108807424|ref|YP_651340.1| arginyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|145598372|ref|YP_001162448.1| arginyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149366025|ref|ZP_01888060.1| arginyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162421704|ref|YP_001606856.1| arginyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165926439|ref|ZP_02222271.1| arginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938879|ref|ZP_02227433.1| arginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009270|ref|ZP_02230168.1| arginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210482|ref|ZP_02236517.1| arginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401417|ref|ZP_02306914.1| arginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420373|ref|ZP_02312126.1| arginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424725|ref|ZP_02316478.1| arginyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218929153|ref|YP_002347028.1| arginyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229894757|ref|ZP_04509937.1| arginyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229897461|ref|ZP_04512617.1| arginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229898107|ref|ZP_04513256.1| arginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|270490849|ref|ZP_06207923.1| arginine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294503888|ref|YP_003567950.1| arginyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|384122397|ref|YP_005505017.1| arginyl-tRNA synthetase [Yersinia pestis D106004]
 gi|384126206|ref|YP_005508820.1| arginyl-tRNA synthetase [Yersinia pestis D182038]
 gi|384140125|ref|YP_005522827.1| arginyl-tRNA synthetase [Yersinia pestis A1122]
 gi|420546923|ref|ZP_15044860.1| arginine--tRNA ligase [Yersinia pestis PY-01]
 gi|420552245|ref|ZP_15049616.1| arginine--tRNA ligase [Yersinia pestis PY-02]
 gi|420557762|ref|ZP_15054468.1| arginine--tRNA ligase [Yersinia pestis PY-03]
 gi|420563267|ref|ZP_15059337.1| arginine--tRNA ligase [Yersinia pestis PY-04]
 gi|420568309|ref|ZP_15063914.1| arginine--tRNA ligase [Yersinia pestis PY-05]
 gi|420573981|ref|ZP_15069050.1| arginine--tRNA ligase [Yersinia pestis PY-06]
 gi|420579290|ref|ZP_15073870.1| arginine--tRNA ligase [Yersinia pestis PY-07]
 gi|420584622|ref|ZP_15078708.1| arginine--tRNA ligase [Yersinia pestis PY-08]
 gi|420589751|ref|ZP_15083321.1| arginine--tRNA ligase [Yersinia pestis PY-09]
 gi|420595144|ref|ZP_15088180.1| arginine--tRNA ligase [Yersinia pestis PY-10]
 gi|420600784|ref|ZP_15093208.1| arginine--tRNA ligase [Yersinia pestis PY-11]
 gi|420606233|ref|ZP_15098105.1| arginine--tRNA ligase [Yersinia pestis PY-12]
 gi|420611612|ref|ZP_15102953.1| arginine--tRNA ligase [Yersinia pestis PY-13]
 gi|420616980|ref|ZP_15107672.1| arginine--tRNA ligase [Yersinia pestis PY-14]
 gi|420622309|ref|ZP_15112417.1| arginine--tRNA ligase [Yersinia pestis PY-15]
 gi|420627396|ref|ZP_15117030.1| arginine--tRNA ligase [Yersinia pestis PY-16]
 gi|420632494|ref|ZP_15121625.1| arginine--tRNA ligase [Yersinia pestis PY-19]
 gi|420637703|ref|ZP_15126295.1| arginine--tRNA ligase [Yersinia pestis PY-25]
 gi|420643237|ref|ZP_15131318.1| arginine--tRNA ligase [Yersinia pestis PY-29]
 gi|420648453|ref|ZP_15136061.1| arginine--tRNA ligase [Yersinia pestis PY-32]
 gi|420654095|ref|ZP_15141130.1| arginine--tRNA ligase [Yersinia pestis PY-34]
 gi|420659574|ref|ZP_15146054.1| arginine--tRNA ligase [Yersinia pestis PY-36]
 gi|420664902|ref|ZP_15150825.1| arginine--tRNA ligase [Yersinia pestis PY-42]
 gi|420669799|ref|ZP_15155274.1| arginine--tRNA ligase [Yersinia pestis PY-45]
 gi|420675143|ref|ZP_15160132.1| arginine--tRNA ligase [Yersinia pestis PY-46]
 gi|420680734|ref|ZP_15165198.1| arginine--tRNA ligase [Yersinia pestis PY-47]
 gi|420686017|ref|ZP_15169916.1| arginine--tRNA ligase [Yersinia pestis PY-48]
 gi|420691209|ref|ZP_15174501.1| arginine--tRNA ligase [Yersinia pestis PY-52]
 gi|420697008|ref|ZP_15179579.1| arginine--tRNA ligase [Yersinia pestis PY-53]
 gi|420702576|ref|ZP_15184187.1| arginine--tRNA ligase [Yersinia pestis PY-54]
 gi|420708276|ref|ZP_15188999.1| arginine--tRNA ligase [Yersinia pestis PY-55]
 gi|420713677|ref|ZP_15193832.1| arginine--tRNA ligase [Yersinia pestis PY-56]
 gi|420719139|ref|ZP_15198580.1| arginine--tRNA ligase [Yersinia pestis PY-58]
 gi|420724665|ref|ZP_15203379.1| arginine--tRNA ligase [Yersinia pestis PY-59]
 gi|420730288|ref|ZP_15208410.1| arginine--tRNA ligase [Yersinia pestis PY-60]
 gi|420735303|ref|ZP_15212949.1| arginine--tRNA ligase [Yersinia pestis PY-61]
 gi|420740778|ref|ZP_15217875.1| arginine--tRNA ligase [Yersinia pestis PY-63]
 gi|420746307|ref|ZP_15222640.1| arginine--tRNA ligase [Yersinia pestis PY-64]
 gi|420751918|ref|ZP_15227540.1| arginine--tRNA ligase [Yersinia pestis PY-65]
 gi|420757427|ref|ZP_15232139.1| arginine--tRNA ligase [Yersinia pestis PY-66]
 gi|420762973|ref|ZP_15236825.1| arginine--tRNA ligase [Yersinia pestis PY-71]
 gi|420768154|ref|ZP_15241492.1| arginine--tRNA ligase [Yersinia pestis PY-72]
 gi|420773200|ref|ZP_15246036.1| arginine--tRNA ligase [Yersinia pestis PY-76]
 gi|420778731|ref|ZP_15250937.1| arginine--tRNA ligase [Yersinia pestis PY-88]
 gi|420784311|ref|ZP_15255825.1| arginine--tRNA ligase [Yersinia pestis PY-89]
 gi|420789556|ref|ZP_15260490.1| arginine--tRNA ligase [Yersinia pestis PY-90]
 gi|420795053|ref|ZP_15265442.1| arginine--tRNA ligase [Yersinia pestis PY-91]
 gi|420800110|ref|ZP_15269982.1| arginine--tRNA ligase [Yersinia pestis PY-92]
 gi|420805499|ref|ZP_15274851.1| arginine--tRNA ligase [Yersinia pestis PY-93]
 gi|420810808|ref|ZP_15279640.1| arginine--tRNA ligase [Yersinia pestis PY-94]
 gi|420816384|ref|ZP_15284653.1| arginine--tRNA ligase [Yersinia pestis PY-95]
 gi|420821655|ref|ZP_15289408.1| arginine--tRNA ligase [Yersinia pestis PY-96]
 gi|420826751|ref|ZP_15293973.1| arginine--tRNA ligase [Yersinia pestis PY-98]
 gi|420832449|ref|ZP_15299120.1| arginine--tRNA ligase [Yersinia pestis PY-99]
 gi|420837321|ref|ZP_15303524.1| arginine--tRNA ligase [Yersinia pestis PY-100]
 gi|420842490|ref|ZP_15308209.1| arginine--tRNA ligase [Yersinia pestis PY-101]
 gi|420848137|ref|ZP_15313291.1| arginine--tRNA ligase [Yersinia pestis PY-102]
 gi|420853654|ref|ZP_15318054.1| arginine--tRNA ligase [Yersinia pestis PY-103]
 gi|420859008|ref|ZP_15322685.1| arginine--tRNA ligase [Yersinia pestis PY-113]
 gi|421763536|ref|ZP_16200331.1| arginyl-tRNA ligase [Yersinia pestis INS]
 gi|21542252|sp|Q8ZEV7.1|SYR_YERPE RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|123245827|sp|Q1C827.1|SYR_YERPA RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|166200588|sp|A4TJL3.1|SYR_YERPP RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|238687249|sp|A9QYY6.1|SYR_YERPG RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|21959114|gb|AAM85826.1|AE013829_6 arginine tRNA synthetase [Yersinia pestis KIM10+]
 gi|45436553|gb|AAS62107.1| arginyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108779337|gb|ABG13395.1| arginyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|115347764|emb|CAL20681.1| arginyl-tRNA synthetase [Yersinia pestis CO92]
 gi|145210068|gb|ABP39475.1| arginyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149292438|gb|EDM42512.1| arginyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162354519|gb|ABX88467.1| arginyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165913242|gb|EDR31865.1| arginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921660|gb|EDR38857.1| arginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991825|gb|EDR44126.1| arginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207662|gb|EDR52142.1| arginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962068|gb|EDR58089.1| arginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049113|gb|EDR60521.1| arginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056607|gb|EDR66376.1| arginyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229688823|gb|EEO80890.1| arginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693798|gb|EEO83847.1| arginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229702230|gb|EEO90249.1| arginyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|262361993|gb|ACY58714.1| arginyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262365870|gb|ACY62427.1| arginyl-tRNA synthetase [Yersinia pestis D182038]
 gi|270339353|gb|EFA50130.1| arginine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294354347|gb|ADE64688.1| arginyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|342855254|gb|AEL73807.1| arginyl-tRNA synthetase [Yersinia pestis A1122]
 gi|391426244|gb|EIQ88445.1| arginine--tRNA ligase [Yersinia pestis PY-01]
 gi|391427992|gb|EIQ90019.1| arginine--tRNA ligase [Yersinia pestis PY-02]
 gi|391429020|gb|EIQ90916.1| arginine--tRNA ligase [Yersinia pestis PY-03]
 gi|391441830|gb|EIR02285.1| arginine--tRNA ligase [Yersinia pestis PY-04]
 gi|391443470|gb|EIR03784.1| arginine--tRNA ligase [Yersinia pestis PY-05]
 gi|391446729|gb|EIR06738.1| arginine--tRNA ligase [Yersinia pestis PY-06]
 gi|391458959|gb|EIR17778.1| arginine--tRNA ligase [Yersinia pestis PY-07]
 gi|391459849|gb|EIR18595.1| arginine--tRNA ligase [Yersinia pestis PY-08]
 gi|391462032|gb|EIR20595.1| arginine--tRNA ligase [Yersinia pestis PY-09]
 gi|391474884|gb|EIR32136.1| arginine--tRNA ligase [Yersinia pestis PY-10]
 gi|391476810|gb|EIR33902.1| arginine--tRNA ligase [Yersinia pestis PY-11]
 gi|391477138|gb|EIR34198.1| arginine--tRNA ligase [Yersinia pestis PY-12]
 gi|391490740|gb|EIR46364.1| arginine--tRNA ligase [Yersinia pestis PY-13]
 gi|391491917|gb|EIR47430.1| arginine--tRNA ligase [Yersinia pestis PY-15]
 gi|391494089|gb|EIR49366.1| arginine--tRNA ligase [Yersinia pestis PY-14]
 gi|391506546|gb|EIR60458.1| arginine--tRNA ligase [Yersinia pestis PY-16]
 gi|391507300|gb|EIR61139.1| arginine--tRNA ligase [Yersinia pestis PY-19]
 gi|391511669|gb|EIR65053.1| arginine--tRNA ligase [Yersinia pestis PY-25]
 gi|391522170|gb|EIR74578.1| arginine--tRNA ligase [Yersinia pestis PY-29]
 gi|391524665|gb|EIR76862.1| arginine--tRNA ligase [Yersinia pestis PY-34]
 gi|391525836|gb|EIR77940.1| arginine--tRNA ligase [Yersinia pestis PY-32]
 gi|391537759|gb|EIR88621.1| arginine--tRNA ligase [Yersinia pestis PY-36]
 gi|391540367|gb|EIR91002.1| arginine--tRNA ligase [Yersinia pestis PY-42]
 gi|391542308|gb|EIR92780.1| arginine--tRNA ligase [Yersinia pestis PY-45]
 gi|391555595|gb|EIS04757.1| arginine--tRNA ligase [Yersinia pestis PY-46]
 gi|391556077|gb|EIS05192.1| arginine--tRNA ligase [Yersinia pestis PY-47]
 gi|391557344|gb|EIS06348.1| arginine--tRNA ligase [Yersinia pestis PY-48]
 gi|391570850|gb|EIS18272.1| arginine--tRNA ligase [Yersinia pestis PY-52]
 gi|391571468|gb|EIS18817.1| arginine--tRNA ligase [Yersinia pestis PY-53]
 gi|391579416|gb|EIS25549.1| arginine--tRNA ligase [Yersinia pestis PY-54]
 gi|391583890|gb|EIS29496.1| arginine--tRNA ligase [Yersinia pestis PY-55]
 gi|391586993|gb|EIS32228.1| arginine--tRNA ligase [Yersinia pestis PY-56]
 gi|391598921|gb|EIS42594.1| arginine--tRNA ligase [Yersinia pestis PY-58]
 gi|391600265|gb|EIS43812.1| arginine--tRNA ligase [Yersinia pestis PY-60]
 gi|391602037|gb|EIS45386.1| arginine--tRNA ligase [Yersinia pestis PY-59]
 gi|391614868|gb|EIS56697.1| arginine--tRNA ligase [Yersinia pestis PY-61]
 gi|391615473|gb|EIS57234.1| arginine--tRNA ligase [Yersinia pestis PY-63]
 gi|391620454|gb|EIS61605.1| arginine--tRNA ligase [Yersinia pestis PY-64]
 gi|391627043|gb|EIS67301.1| arginine--tRNA ligase [Yersinia pestis PY-65]
 gi|391636194|gb|EIS75256.1| arginine--tRNA ligase [Yersinia pestis PY-66]
 gi|391638271|gb|EIS77094.1| arginine--tRNA ligase [Yersinia pestis PY-71]
 gi|391640782|gb|EIS79290.1| arginine--tRNA ligase [Yersinia pestis PY-72]
 gi|391650317|gb|EIS87615.1| arginine--tRNA ligase [Yersinia pestis PY-76]
 gi|391654886|gb|EIS91684.1| arginine--tRNA ligase [Yersinia pestis PY-88]
 gi|391659506|gb|EIS95782.1| arginine--tRNA ligase [Yersinia pestis PY-89]
 gi|391663291|gb|EIS99147.1| arginine--tRNA ligase [Yersinia pestis PY-90]
 gi|391670792|gb|EIT05797.1| arginine--tRNA ligase [Yersinia pestis PY-91]
 gi|391680724|gb|EIT14747.1| arginine--tRNA ligase [Yersinia pestis PY-93]
 gi|391682127|gb|EIT16030.1| arginine--tRNA ligase [Yersinia pestis PY-92]
 gi|391682832|gb|EIT16661.1| arginine--tRNA ligase [Yersinia pestis PY-94]
 gi|391694508|gb|EIT27161.1| arginine--tRNA ligase [Yersinia pestis PY-95]
 gi|391698059|gb|EIT30403.1| arginine--tRNA ligase [Yersinia pestis PY-96]
 gi|391699326|gb|EIT31528.1| arginine--tRNA ligase [Yersinia pestis PY-98]
 gi|391709374|gb|EIT40558.1| arginine--tRNA ligase [Yersinia pestis PY-99]
 gi|391715364|gb|EIT45920.1| arginine--tRNA ligase [Yersinia pestis PY-100]
 gi|391716137|gb|EIT46614.1| arginine--tRNA ligase [Yersinia pestis PY-101]
 gi|391726555|gb|EIT55887.1| arginine--tRNA ligase [Yersinia pestis PY-102]
 gi|391729844|gb|EIT58792.1| arginine--tRNA ligase [Yersinia pestis PY-103]
 gi|391734939|gb|EIT63154.1| arginine--tRNA ligase [Yersinia pestis PY-113]
 gi|411176437|gb|EKS46457.1| arginyl-tRNA ligase [Yersinia pestis INS]
          Length = 576

 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 233/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L  +  KIE+A PGF+N+FL R +  E+++  +   
Sbjct: 53  -MQPRQLAERVVELL--------DLTGIASKIEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V+P T      ++VD+S+PN+AK+MHVGHLRSTIIGD   R L +LGH+V+R N
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLAFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F  RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFALRARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   + ++V  L+ KG
Sbjct: 217 LQSGDEYCRQMWRKLVDITMAQNQVAYDRLNVTLTKDDVMGESLYNAMLPEIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD I
Sbjct: 277 LAVESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRI 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTVKLSDLLDEAVER 400



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 188/354 (53%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R L +LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F  RA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFALRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQVAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNAMLPEIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       I+Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRILYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +   A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAVERAGKLIAEKN--PDMPADELKQVINA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AG++
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFRRAGVD 477



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 104/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +   AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVINAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG++   L     + P+ +  ++E  LA  LL+  +++  V R+   H +C YL
Sbjct: 468  VSVFRRAGVDETSL-----TLPLVVTEDREATLATRLLQFEEIITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  ++E     +   RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNAESE----EIRQSRLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK------ 122
              P  +A+ +  ++         L  +  KIE A PGF+N+FL R +  E+++      
Sbjct: 53  -MQPRQLAERVVELL--------DLTGIASKIEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + V  V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQ 127


>gi|254361175|ref|ZP_04977319.1| arginine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|452743770|ref|ZP_21943629.1| arginyl-tRNA ligase [Mannheimia haemolytica serotype 6 str. H23]
 gi|153092666|gb|EDN73715.1| arginine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|452088158|gb|EME04522.1| arginyl-tRNA ligase [Mannheimia haemolytica serotype 6 str. H23]
          Length = 575

 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/332 (40%), Positives = 192/332 (57%), Gaps = 34/332 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K         NP + AQ I          N  L  + DK+E+A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILE--------NADLNGIADKLEIAGPG 81

Query: 303 FVNVFLSRVYAGE------QIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL+  +  E      Q  +  +    P T      +++D+SSPN+AKEMHVGHLRS
Sbjct: 82  FINIFLNPEWLAENTNSSLQAVNFGIKTANPQT------IVIDYSSPNVAKEMHVGHLRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD + R L +LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+
Sbjct: 136 TIIGDAVVRTLAFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER- 475
            +K+ +D DE F ++A   VV LQ  D      W+ + D++    Q+ Y+RLNVTLTE+ 
Sbjct: 195 AAKEHYDSDEAFAEKARNYVVKLQSGDKYCLTMWKKLVDITMHHNQENYNRLNVTLTEKD 254

Query: 476 --GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   + ++V  L+ KGL   DDG  +++ +   ++   PM ++  K DGGF Y 
Sbjct: 255 VMGESLYNPMLPEIVADLKAKGLAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           T+D+AA + R E  KAD  +  +D  Q  H +
Sbjct: 315 TTDIAAAKYRYETLKADRALVFSDSRQAQHMQ 346



 Score =  219 bits (558), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 141/354 (39%), Positives = 191/354 (53%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R L +LG++V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLAFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D DE F ++A   VV LQ  D      W+ + D++    Q+ Y+RL
Sbjct: 187 SDLEAFYRAAKEHYDSDEAFAEKARNYVVKLQSGDKYCLTMWKKLVDITMHHNQENYNRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   + ++V  L+ K                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPEIVADLKAKGLAVEDDGALVVFLDEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDSRQAQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKL +LLDE + R+ DKL  + R TELT  E +   +A
Sbjct: 366 HPFFGMMLGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLIAE-RSTELTAEEKAAVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           VA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   A I+
Sbjct: 424 VAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFARANID 477



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 103/178 (57%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R TELT  E +   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RSTELTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   A I+   L     S  + L   KE ALA  LL+  + L  V ++   H LC+YL
Sbjct: 468  RSIFARANIDENAL-----SGSIQLNEPKERALAVKLLQFEEALNGVAKEGMPHILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++ +FS FY+ C  +  +     +T    RL LA  TAK +K+  D+L I+TV KM
Sbjct: 523  YELAGSFSSFYEACPILNAE-----ETTKNSRLKLAALTAKTLKQGLDLLGIKTVEKM 575



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 25/112 (22%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K         NP + AQ I          N  L  + DK+E A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILE--------NADLNGIADKLEIAGPG 81

Query: 107 FVNVFLSRVYAGE------QMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL+  +  E      Q  +  +    P T      +++D+SSPN+A++
Sbjct: 82  FINIFLNPEWLAENTNSSLQAVNFGIKTANPQT------IVIDYSSPNVAKE 127


>gi|261491990|ref|ZP_05988566.1| arginine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261495282|ref|ZP_05991734.1| arginine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309047|gb|EEY10298.1| arginine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261312361|gb|EEY13488.1| arginine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 575

 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/332 (40%), Positives = 192/332 (57%), Gaps = 34/332 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K         NP + AQ I          N  L  + DK+E+A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILE--------NADLNGIADKLEIAGPG 81

Query: 303 FVNVFLSRVYAGE------QIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL+  +  E      Q  +  +    P T      +++D+SSPN+AKEMHVGHLRS
Sbjct: 82  FINIFLNPEWLAENTNSSLQAVNFGIKTANPQT------IVIDYSSPNVAKEMHVGHLRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD + R L +LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+
Sbjct: 136 TIIGDAVVRTLAFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEHVSEMELSDLEAFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER- 475
            +K+ +D DE F ++A   VV LQ  D      W+ + D++    Q+ Y+RLNVTLTE+ 
Sbjct: 195 AAKEHYDSDEAFAEKARNYVVKLQSSDKYCLTMWKKLVDITMHHNQENYNRLNVTLTEKD 254

Query: 476 --GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   + ++V  L+ KGL   DDG  +++ +   ++   PM ++  K DGGF Y 
Sbjct: 255 VMGESLYNPMLPEIVADLKAKGLAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           T+D+AA + R E  KAD  +  +D  Q  H +
Sbjct: 315 TTDIAAAKYRYETLKADRALVFSDSRQAQHMQ 346



 Score =  219 bits (558), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 141/356 (39%), Positives = 192/356 (53%), Gaps = 58/356 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R L +LG++V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAVVRTLAFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEHVSEMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D DE F ++A   VV LQ  D      W+ + D++    Q+ Y+RL
Sbjct: 187 SDLEAFYRAAKEHYDSDEAFAEKARNYVVKLQSSDKYCLTMWKKLVDITMHHNQENYNRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   + ++V  L+ K                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPEIVADLKAKGLAVEDDGALVVFLDEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKADRALVFSDSRQAQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKL +LLDE + R+ DKL  + R TELT  E +   +A
Sbjct: 366 HPFFGMMLGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLIAE-RSTELTAEEKAAVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           VA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   A I+ +
Sbjct: 424 VAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFARANIDED 479



 Score =  137 bits (344), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 104/178 (58%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R TELT  E +   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  RSTELTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   A I+ + L     S  + L   KE ALA  LL+  + L  V ++   H LC+YL
Sbjct: 468  RSIFARANIDEDAL-----SGSIQLNEPKERALAVKLLQFEEALNGVAKEGMPHILCQYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++ +FS FY+ C  +  +     +T    RL LA  TAK +K+  D+L I+TV KM
Sbjct: 523  YELAGSFSSFYEACPILNAE-----ETTKNSRLKLAALTAKTLKQGLDLLGIKTVEKM 575



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 25/112 (22%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K         NP + AQ I          N  L  + DK+E A PG
Sbjct: 35  EFGDYQANGAMGAAKKLG-----MNPREFAQKILE--------NADLNGIADKLEIAGPG 81

Query: 107 FVNVFLSRVYAGE------QMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL+  +  E      Q  +  +    P T      +++D+SSPN+A++
Sbjct: 82  FINIFLNPEWLAENTNSSLQAVNFGIKTANPQT------IVIDYSSPNVAKE 127


>gi|238762982|ref|ZP_04623949.1| Arginyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238698740|gb|EEP91490.1| Arginyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 576

 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 156/440 (35%), Positives = 233/440 (52%), Gaps = 54/440 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S     +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEPQVRQSAKAQFGDYQANGVMAIAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ +   +        +L  +  KIE+A PGF+N+FL R +   ++ + +   
Sbjct: 53  -MQPRQLAEKVIEQL--------NLDGIASKIEIAGPGFINIFLDRQWVASKVDEALKAP 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GVQP    +   +++D+S+PN+AK+MHVGHLRSTIIGD  +R LE+LGH V+R NHVG
Sbjct: 104 KLGVQPV---EPQTIVIDYSAPNVAKQMHVGHLRSTIIGDAAARTLEFLGHRVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F +RA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFAQRARAYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   +  +V  L+ KGL  
Sbjct: 220 GDEYCRQMWRKLVDITMAQNQIAYDRLNVTLTKDDVMGESLYNAMLPGIVADLKAKGLAV 279

Query: 499 LDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
             +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD ++Y 
Sbjct: 280 ESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  P +
Sbjct: 337 IDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGKP-F 380

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E+ +R
Sbjct: 381 KTRSGGTVKLSDLLDEAIER 400



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 190/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R LE+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTLEFLGHRVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F +RA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFAQRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQIAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNAMLPGIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +   A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAIERAGKLIAEKN--PDMPADELKQVVDA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ + AGI+      
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFKRAGIDESSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  132 bits (333), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 106/178 (59%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +   AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVVDAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ + AGI+   L     + P+ +  ++E ALA  LL+  +V+  V R+   H +C YL
Sbjct: 468  VSVFKRAGIDESSL-----TLPLVITEDREAALATRLLQFEEVITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  ++E   ++    RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNAESEESRQS----RLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S     +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAGSEPQVRQSAKAQFGDYQANGVMAIAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ +   +        +L  +  KIE A PGF+N+FL R +   ++ + +   
Sbjct: 53  -MQPRQLAEKVIEQL--------NLDGIASKIEIAGPGFINIFLDRQWVASKVDEALKAP 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             GVQP    +   +++D+S+PN+A++
Sbjct: 104 KLGVQPV---EPQTIVIDYSAPNVAKQ 127


>gi|238756954|ref|ZP_04618142.1| Arginyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238704784|gb|EEP97313.1| Arginyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 576

 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 157/440 (35%), Positives = 232/440 (52%), Gaps = 54/440 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAECEAQVRQSAKVQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ +   +         L  +  K+E+A PGF+N+FL R +  E+++  +   
Sbjct: 53  -MQPRQLAEKVIEQL--------DLTGIASKVEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GV P    + L ++VD+S+PN+AK+MHVGHLRSTIIGD   R LE+LGH+V+R NHVG
Sbjct: 104 KLGVAPV---EPLTIVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLEFLGHNVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F KRA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFAKRARAYVVKLQG 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   +  W  + D++    Q  Y+RLNVTLT+    GES Y   +  +V  L+ KGL  
Sbjct: 220 GDEYCRAMWRKLVDITMAQNQIAYNRLNVTLTQDDVMGESLYNPMLPGIVADLKAKGLAV 279

Query: 499 LDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
             +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD ++Y 
Sbjct: 280 ESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  P +
Sbjct: 337 IDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGKP-F 380

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L     E+ +R
Sbjct: 381 KTRSGGTVKLSDLLDEAIER 400



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 190/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F KRA   VV LQ  D   +  W  + D++    Q  Y+RL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFAKRARAYVVKLQGGDEYCRAMWRKLVDITMAQNQIAYNRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTQDDVMGESLYNPMLPGIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +  +A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAIERAGKLIAEKN--PDMPADELKQVVEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ + AGI+      
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVISVFKRAGIDESSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 107/178 (60%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +  +AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVVEAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ + AGI+   L     + P+ +  E+E +LA  LL+  +V+  V R+   H +C YL
Sbjct: 468  ISVFKRAGIDESSL-----TLPLVITEEREASLATRLLQFEEVITAVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D+E   ++    RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNADSEESRQS----RLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPAECEAQVRQSAKVQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ +   +         L  +  K+E A PGF+N+FL R +  E+++  +   
Sbjct: 53  -MQPRQLAEKVIEQL--------DLTGIASKVEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             GV P    + L ++VD+S+PN+A++
Sbjct: 104 KLGVAPV---EPLTIVVDYSAPNVAKQ 127


>gi|418294078|ref|ZP_12905979.1| arginyl-tRNA synthetase [Pseudomonas stutzeri ATCC 14405 = CCUG
           16156]
 gi|379065462|gb|EHY78205.1| arginyl-tRNA synthetase [Pseudomonas stutzeri ATCC 14405 = CCUG
           16156]
          Length = 579

 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 153/407 (37%), Positives = 223/407 (54%), Gaps = 50/407 (12%)

Query: 211 LSDVFTHAVQVA---------FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           + D   H +Q A          PE       V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQAVVRLTAEGVLPEGLTPAIQVENTKDK---SHGDFASNIAMMLAK---P 54

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
            G K  P D+A+ +       +A  P  A+V  K+E+A PGF+N F +     E+++  +
Sbjct: 55  AGMK--PRDLAEKL-------IAALPQDAQV-SKVEIAGPGFLNFFQNSEALAERLEIAL 104

Query: 322 VN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            +    V+  T  +  RV++D SSPN+AKEMHVGHLRSTIIGD + R+LE+LG  V+R N
Sbjct: 105 ADPLLAVRKATATQ--RVVIDLSSPNLAKEMHVGHLRSTIIGDAVGRVLEHLGDKVIRQN 162

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+L++K          ++DL+ FY+ +K+RFDE   F  RA + VV 
Sbjct: 163 HVGDWGTQFGMLLAYLEEKPA---AAESELSDLEQFYRAAKQRFDESAQFADRARELVVK 219

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D      W    D+S    QK+YDRLNV LT    +GES Y   +  +V  L  KG
Sbjct: 220 LQAGDAQCLSLWTRFNDISLAHCQKLYDRLNVKLTPADVKGESAYNADLAYIVEALRSKG 279

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           LL  D+G + ++       +   +P+ + K+ GG+ Y T+DLAA+R R +   AD ++Y 
Sbjct: 280 LLTEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLYATTDLAAMRYRSQVLHADRVLYF 339

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            D  Q +HF++  E       ++R   ++ H+ ++L H+G +GT  G
Sbjct: 340 VDQRQALHFQMAFE-------VARRAGFV-HEGMQLEHMG-FGTMNG 377



 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/383 (37%), Positives = 203/383 (53%), Gaps = 57/383 (14%)

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           L A+R+    ++    +   +L + +H   L  STIIGD + R+LE+LG  V+R NHVGD
Sbjct: 108 LLAVRKATATQRVVIDLSSPNLAKEMHVGHLR-STIIGDAVGRVLEHLGDKVIRQNHVGD 166

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 651
           WGTQFGML+A+L++K          ++DL+ FY+ +K+RFDE   F  RA + VV LQ  
Sbjct: 167 WGTQFGMLLAYLEEKPA---AAESELSDLEQFYRAAKQRFDESAQFADRARELVVKLQAG 223

Query: 652 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGNLS- 707
           D      W    D+S    QK+YDRLNV LT    +GES Y   +  +V  L  KG L+ 
Sbjct: 224 DAQCLSLWTRFNDISLAHCQKLYDRLNVKLTPADVKGESAYNADLAYIVEALRSKGLLTE 283

Query: 708 ----------------------LTKKLG------------------------IVYVTDLG 721
                                 + +K G                        ++Y  D  
Sbjct: 284 DNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLYATTDLAAMRYRSQVLHADRVLYFVDQR 343

Query: 722 QGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLR 781
           Q +HF++  E A++AG ++    +++ +GFG + G D + FKTR G TVKL +LLDE  +
Sbjct: 344 QALHFQMAFEVARRAGFVHEG-MQLEHMGFGTMNGADGRPFKTRDGGTVKLIDLLDEAEQ 402

Query: 782 RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 841
           R+   +KDKN   +L   EL +  QAV    +KYADLS +R  DY F+F+ ML   GNTA
Sbjct: 403 RAYTLVKDKN--PDLDEVELRQIAQAVGISAVKYADLSKHRTSDYRFNFELMLSFEGNTA 460

Query: 842 VYLLYAYTRIASIARTAGINSED 864
            YLLYAYTR+AS+ R  G   E+
Sbjct: 461 PYLLYAYTRVASVFRKLGKRIEE 483



 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 101/176 (57%), Gaps = 11/176 (6%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   +KDKN   +L   EL +  QAV    +KYADLS +R  DY F+F+ ML   GNT
Sbjct: 402  QRAYTLVKDKN--PDLDEVELRQIAQAVGISAVKYADLSKHRTSDYRFNFELMLSFEGNT 459

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYAYTR+AS+ R  G   E++     S  + LE E+E ALA  L +  +VL  V  
Sbjct: 460  APYLLYAYTRVASVFRKLGKRIEEI-----SGHIQLEAEQELALAAKLAQFGEVLNSVGE 514

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
                H LC YLYD++  FS FY++C  +  + E + ++    RL LA  T K +K+
Sbjct: 515  KGEPHLLCAYLYDLAGLFSSFYEHCPILSAEQEEQKQS----RLRLAALTGKTLKQ 566



 Score = 45.4 bits (106), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 127/309 (41%), Gaps = 61/309 (19%)

Query: 15  LSDVFTHAVQVA---------FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           + D   H +Q A          PE       V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQAVVRLTAEGVLPEGLTPAIQVENTKDK---SHGDFASNIAMMLAK---P 54

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
            G K  P D+A+ +       +A  P  A+V  K+E A PGF+N F +     E+++  +
Sbjct: 55  AGMK--PRDLAEKL-------IAALPQDAQV-SKVEIAGPGFLNFFQNSEALAERLEIAL 104

Query: 126 VN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGI 182
            +    V+  T  +  RV++D SSPN+A++      HL S I    + + +  E     +
Sbjct: 105 ADPLLAVRKATATQ--RVVIDLSSPNLAKE--MHVGHLRSTIIGDAVGRVL--EHLGDKV 158

Query: 183 SSSSSSQTKGTAKKMNVPVSDR--MSVRDYLSDV--FTHAVQVAFPELGDKTASVASTNE 238
              +     GT   M +   +    +    LSD+  F  A +  F    D++A  A    
Sbjct: 159 IRQNHVGDWGTQFGMLLAYLEEKPAAAESELSDLEQFYRAAKQRF----DESAQFADRAR 214

Query: 239 KYVHKF--GDFQC-------ND-AMALCKIFKDK-GEKKNPFDIAQSIASVVTSELATNP 287
           + V K   GD QC       ND ++A C+   D+   K  P D        V  E A N 
Sbjct: 215 ELVVKLQAGDAQCLSLWTRFNDISLAHCQKLYDRLNVKLTPAD--------VKGESAYNA 266

Query: 288 SLAKVIDKI 296
            LA +++ +
Sbjct: 267 DLAYIVEAL 275


>gi|421079122|ref|ZP_15540067.1| Arginine--tRNA ligase [Pectobacterium wasabiae CFBP 3304]
 gi|401706309|gb|EJS96487.1| Arginine--tRNA ligase [Pectobacterium wasabiae CFBP 3304]
          Length = 576

 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 224/414 (54%), Gaps = 57/414 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++        +L  + +K E+A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V+P T      +++D+S+PN+AKEMHVGHLRSTIIGD  +R L +LGH+V+R N
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKEMHVGHLRSTIIGDAAARTLAFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNESANEMDLSDLEAFYREAKKHYDEDADFAERARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  Y+RLNVTLT +   GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRQMWRKLVDITMAQNQINYERLNVTLTTQDVMGESLYNNMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLNADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +Y  D  Q  H  L++  TI+     R   Y+  D V L H       FGM++ 
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVSLEH-----HMFGMMLG 374



 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 142/361 (39%), Positives = 192/361 (53%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R L +LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTLAFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNESANEMDL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+E+KK +DED  F +RA   VV LQ  D   ++ W  + D++    Q  Y+RL
Sbjct: 187 SDLEAFYREAKKHYDEDADFAERARGYVVKLQGGDEYCRQMWRKLVDITMAQNQINYERL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT +   GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTTQDVMGESLYNNMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLNADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KLSELLDE   R+L  + +KN   E    EL    + 
Sbjct: 366 HHMFGMMLGKDGKPFKTRAGGTIKLSELLDEAYDRALKLIAEKNPQME--RDELEALAKV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V+ G IKYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI + AGI  +   +
Sbjct: 424 VSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGIQEDTLTQ 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 109/188 (57%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  + +KN   E    EL    + V+ G IKYADLS +R  DYVF +D ML   GNTA
Sbjct: 400  RALKLIAEKNPQME--RDELEALAKVVSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI + AGI  + L     + P++L  E+EFALA  LL+  + +  V R+
Sbjct: 458  PYMQYAYTRVASIFKRAGIQEDTL-----TQPITLNDEREFALATRLLQFEETITSVARE 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  + +     V   RL LA  TAK +K+  D L
Sbjct: 513  GTPHVMCSYLYDLAGLFSGFYEHCPILNAETD----DVRQSRLRLALLTAKTLKQGLDTL 568

Query: 1112 NIRTVHKM 1119
             I TV KM
Sbjct: 569  GIETVEKM 576



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++        +L  + +K E A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWVASQVENALNAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V+P T      +++D+S+PN+A++
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKE 127


>gi|260914195|ref|ZP_05920668.1| arginine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260631828|gb|EEX50006.1| arginine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 597

 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 144/418 (34%), Positives = 228/418 (54%), Gaps = 35/418 (8%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  + +H +Q A   +G      A   +    +FGD+Q N  MA  K         NP +
Sbjct: 23  IQSILSHRIQQAMIAVGADKNVDALVRQSSKAQFGDYQANGIMAAAK-----KAGYNPRE 77

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTL 330
            A+ +   +         L  + +KIE+A PGF+N+FL + +  E +++ + +     T+
Sbjct: 78  FAEKVIQQL--------DLNGIAEKIELAGPGFINIFLDKHWLAENVQNALNDEKLGITV 129

Query: 331 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 390
            +K  V+ D+SSPN+AKEMHVGHLRSTIIGD + R LE+LG+ V+R NHVGDWGTQFGML
Sbjct: 130 TEKQTVVADYSSPNVAKEMHVGHLRSTIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGML 189

Query: 391 IAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAW 450
           IA+L+ K  +       ++DL+AFY+ +K+ +D D  F ++A   VV LQ  D   +  W
Sbjct: 190 IAYLE-KMENENASEMELSDLEAFYRAAKEHYDSDPEFAEKARNYVVKLQGGDEYCRTMW 248

Query: 451 EMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW 507
           + + D++ +  Q+ Y+RLNVTLTE+   GES Y   +  +V  L+K+ L   D+G  +++
Sbjct: 249 KKLVDITMQQNQQNYNRLNVTLTEKDVMGESLYNPMLPSIVEDLKKRHLAVEDEGALVVY 308

Query: 508 -----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
                 +D  ++ + + K DGGF Y T+D+AA + R E   AD  +  +D  Q  H   +
Sbjct: 309 LDEFKNKDGEAMGVIVQKKDGGFLYTTTDIAAAKYRYETLNADRALVFSDTRQSQH---M 365

Query: 563 EESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +++ +    I+R   Y+  D  +L H       FGM++      F      +  +ADL
Sbjct: 366 QQAWL----ITRKAGYVP-DNFQLEH-----KNFGMMLGKDGKPFKTRTGGTVKLADL 413



 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 138/359 (38%), Positives = 194/359 (54%), Gaps = 59/359 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 155 STIIGDAVVRTLEFLGNKVIRANHVGDWGTQFGMLIAYLE-KMENENASEMELSDLEAFY 213

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+ +D D  F ++A   VV LQ  D   +  W+ + D++ +  Q+ Y+RLNVTLTE+
Sbjct: 214 RAAKEHYDSDPEFAEKARNYVVKLQGGDEYCRTMWKKLVDITMQQNQQNYNRLNVTLTEK 273

Query: 685 ---GESFY------------QKHME-----QLVPYL--------EKKGNLSLTKKLGIVY 716
              GES Y            ++H+       LV YL        E  G +   K  G +Y
Sbjct: 274 DVMGESLYNPMLPSIVEDLKKRHLAVEDEGALVVYLDEFKNKDGEAMGVIVQKKDGGFLY 333

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  +++   FG++
Sbjct: 334 TTTDIAAAKYRYETLNADRALVFSDTRQSQHMQQAWLITRKAGYV-PDNFQLEHKNFGMM 392

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   + +K+  T L+  E +   +AVA G +K
Sbjct: 393 LGKDGKPFKTRTGGTVKLADLLDEAVERATQLINEKS--TALSEQEKAAVIEAVAIGSVK 450

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQS 873
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTRI SI      N  D  E    Q+
Sbjct: 451 YADLSKNRTTDYIFDWDNMLSFEGNTAPYMQYAYTRIRSI-----FNRSDISESQLQQA 504



 Score =  124 bits (312), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 99/178 (55%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E +   +AVA G +KYADLS NR  DY+F +D ML   GNTA Y+ YAYTRI
Sbjct: 428  KSTALSEQEKAAVIEAVAIGSVKYADLSKNRTTDYIFDWDNMLSFEGNTAPYMQYAYTRI 487

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + I+   L    Q   +    EKE  LA  LL+  + + +V ++   H LC YL
Sbjct: 488  RSIFNRSDISESQL----QQATLKFADEKERVLAVKLLQFEEAVQVVAKEGSPHILCTYL 543

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E     V   RL LA  T K +K+   +L I+TV KM
Sbjct: 544  YELAGVFSSFYEHCPILNNEDE----NVKMSRLKLALLTEKTLKQGLTLLGIKTVEKM 597



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 15/150 (10%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  + +H +Q A   +G      A   +    +FGD+Q N  MA  K         NP +
Sbjct: 23  IQSILSHRIQQAMIAVGADKNVDALVRQSSKAQFGDYQANGIMAAAK-----KAGYNPRE 77

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTL 134
            A+ +   +         L  + +KIE A PGF+N+FL + +  E +++ + +     T+
Sbjct: 78  FAEKVIQQL--------DLNGIAEKIELAGPGFINIFLDKHWLAENVQNALNDEKLGITV 129

Query: 135 NKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
            +K  V+ D+SSPN+A++      HL S I
Sbjct: 130 TEKQTVVADYSSPNVAKE--MHVGHLRSTI 157


>gi|421618374|ref|ZP_16059351.1| arginyl-tRNA ligase [Pseudomonas stutzeri KOS6]
 gi|409779705|gb|EKN59358.1| arginyl-tRNA ligase [Pseudomonas stutzeri KOS6]
          Length = 579

 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 152/407 (37%), Positives = 222/407 (54%), Gaps = 50/407 (12%)

Query: 211 LSDVFTHAVQVAF---------PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
           + D   H +Q A          PE       V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQALVRLTAEGVLPEGLTPAIQVENTRDK---SHGDFASNIAMMLAKPAGL 57

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
           K     P D+A+ +       +A  P  A+ I K+E+A PGF+N F +     E+++  +
Sbjct: 58  K-----PRDLAEKL-------IAALPQDAQ-ISKVEIAGPGFLNFFQNSDALAERLETAL 104

Query: 322 VN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            +    V+  T  +  RV++D SSPN+AKEMHVGHLRSTIIGD + R+LEYLG +V+R N
Sbjct: 105 ADPQLAVRKATAAQ--RVVIDLSSPNLAKEMHVGHLRSTIIGDAVGRVLEYLGDEVIRQN 162

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+L++K          ++DL+ FY+ +K+RFDE   F  RA + VV 
Sbjct: 163 HVGDWGTQFGMLLAYLEEKPA---AAESELSDLEQFYRAAKQRFDESAEFADRARELVVK 219

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D      W    D+S    QK+YDRLNV LT    +GES Y   +  +V  L  +G
Sbjct: 220 LQAGDSQCLNLWNRFNDISLSHCQKLYDRLNVRLTPADVKGESAYNAELPGIVDALRSQG 279

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           LL  D+G + ++       +   +P+ + K+ GG+ Y T+DLAA+R R +   AD  +Y 
Sbjct: 280 LLTEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLYATTDLAAMRYRSQVLHADRALYF 339

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            D  Q +HF++  E       ++R   ++ H+ ++L H+G +GT  G
Sbjct: 340 VDQRQALHFQMAFE-------VARRAGFV-HEGMQLEHMG-FGTMNG 377



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 186/345 (53%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R+LEYLG +V+R NHVGDWGTQFGML+A+L++K          ++DL+ FY
Sbjct: 140 STIIGDAVGRVLEYLGDEVIRQNHVGDWGTQFGMLLAYLEEKPA---AAESELSDLEQFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA + VV LQ  D      W    D+S    QK+YDRLNV LT  
Sbjct: 197 RAAKQRFDESAEFADRARELVVKLQAGDSQCLNLWNRFNDISLSHCQKLYDRLNVRLTPA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   +  +V  L  +G L+                       + +K G     
Sbjct: 257 DVKGESAYNAELPGIVDALRSQGLLTEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q +HF++  E A++AG ++    +++ +GFG +
Sbjct: 317 ATTDLAAMRYRSQVLHADRALYFVDQRQALHFQMAFEVARRAGFVHEG-MQLEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+   +K KN   EL   EL +  +AV    +K
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLDEAEQRAYALVKGKN--PELDEAELRQIARAVGISAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML   GNTA YLLYAYTR+AS+ R  G
Sbjct: 434 YADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYTRVASVFRKLG 478



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 95/167 (56%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   EL +  +AV    +KYADLS +R  DY F+F+ ML   GNTA YLLYAYT
Sbjct: 409  KGKNPELDEAELRQIARAVGISAVKYADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+ R  G   +++        + LE E+E ALA  L +  +VL  V      H LC 
Sbjct: 469  RVASVFRKLGKGIDEI-----GGHIQLEAEQELALAARLAQFGEVLNNVGEKGEPHLLCT 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY++C  +  + E + ++    RL LA  T + +K+
Sbjct: 524  YLYDLAGLFSSFYEHCPILAAEQEEQKQS----RLRLAALTGRTLKQ 566



 Score = 45.1 bits (105), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 30/150 (20%)

Query: 15  LSDVFTHAVQVAF---------PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
           + D   H +Q A          PE       V +T +K     GDF  N AM L K    
Sbjct: 1   MKDSIRHLIQQALVRLTAEGVLPEGLTPAIQVENTRDK---SHGDFASNIAMMLAKPAGL 57

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           K     P D+A+ +       +A  P  A+ I K+E A PGF+N F +     E+++  +
Sbjct: 58  K-----PRDLAEKL-------IAALPQDAQ-ISKVEIAGPGFLNFFQNSDALAERLETAL 104

Query: 126 VN---GVQPPTLNKKLRVLVDFSSPNIARK 152
            +    V+  T  +  RV++D SSPN+A++
Sbjct: 105 ADPQLAVRKATAAQ--RVVIDLSSPNLAKE 132


>gi|421726858|ref|ZP_16166026.1| arginyl-tRNA ligase [Klebsiella oxytoca M5al]
 gi|410372398|gb|EKP27111.1| arginyl-tRNA ligase [Klebsiella oxytoca M5al]
          Length = 577

 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E +   + +   GV  P       V+VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAENVSSALKSERLGVAQPQAQT---VVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYNRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ +GL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAQGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYENLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 187/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ +G                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAQGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYENLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADID 477



 Score =  130 bits (326), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDESTLAAA----PVVITEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCSYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E +   + +   GV  P       V+VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAENVSSALKSERLGVAQPQAQT---VVVDYSAPNVAKE 127


>gi|227111621|ref|ZP_03825277.1| arginyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 576

 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 225/414 (54%), Gaps = 57/414 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++        +L  + +K E+A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWIASQVENALNAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V+P T      +++D+S+PN+AKEMHVGHLRSTIIGD  +R L +LGH+V+R N
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKEMHVGHLRSTIIGDASARTLAFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNESASEMDLSDLEAFYREAKKHYDEDADFAERARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  Y+RLNVTLT++   GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRQMWRKLVDITMTQNQINYERLNVTLTKQDVMGESLYNSMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLNADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +Y  D  Q  H  L++  TI+     R   Y+  D V L H       FGM++ 
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVSLEH-----HMFGMMLG 374



 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 141/361 (39%), Positives = 194/361 (53%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R L +LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDASARTLAFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNESASEMDL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+E+KK +DED  F +RA   VV LQ  D   ++ W  + D++    Q  Y+RL
Sbjct: 187 SDLEAFYREAKKHYDEDADFAERARAYVVKLQGGDEYCRQMWRKLVDITMTQNQINYERL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT++   GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTKQDVMGESLYNSMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLNADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G T+KLS+LLDE   R+L  + +KN   E    EL+   + 
Sbjct: 366 HHMFGMMLGKDGKPFKTRAGGTIKLSDLLDEAYDRALKLIAEKNPQME--SDELTALAKV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V+ G IKYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI + AGI  +   +
Sbjct: 424 VSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGIQEDSLTQ 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 110/188 (58%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  + +KN   E    EL+   + V+ G IKYADLS +R  DYVF +D ML   GNTA
Sbjct: 400  RALKLIAEKNPQME--SDELTALAKVVSIGAIKYADLSKSRTTDYVFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI + AGI  + L     + P++L  E+EFALA  LL+  + +  V R+
Sbjct: 458  PYMQYAYTRVASIFKRAGIQEDSL-----TQPITLSDEREFALATRLLQFEETITSVARE 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  +++     V   RL LA  TAK +K   D L
Sbjct: 513  GTPHVMCSYLYDLAGLFSGFYEHCPILNAESD----DVRQSRLRLALLTAKTLKLGLDTL 568

Query: 1112 NIRTVHKM 1119
             I TV KM
Sbjct: 569  GIETVEKM 576



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALTAA----GAPADSEAQIRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++        +L  + +K E A PGF+N+FL + +   Q+++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALEGIAEKTEIAGPGFINIFLDKQWIASQVENALNAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V+P T      +++D+S+PN+A++
Sbjct: 104 KLGLTPVEPQT------IVIDYSAPNVAKE 127


>gi|89073534|ref|ZP_01160057.1| arginyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89050798|gb|EAR56279.1| arginyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 576

 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 138/386 (35%), Positives = 212/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +   +         L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVIDCL--------ELDGIAEKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL++ +  E+ ++ + +            ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLNKAWLAERGEEALKDERLAVNTETAQNIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA++Q K  +    S  I+DL+ FY+ESK  +
Sbjct: 142 VVRTLEFLGHNVIRANHLGDWGTQFGMLIANMQRKEQEGTDVSMNISDLEGFYRESKVLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F K A   VV LQ  D    + W+ +  ++ +  Q+ YDRL+V+LT+    GES 
Sbjct: 202 DEDEEFGKTARNFVVRLQSGDEYCLEKWKQLVAITLKQNQRNYDRLSVSLTDDNVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L++KGL    DG  +++ +   ++   PM ++  K DGG+ Y T+D+A 
Sbjct: 262 YNDMLSGVVADLKEKGLAVESDGATVVYLDEYKNKDGEPMGVIIQKRDGGYLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E+  AD ++Y  D  Q  H        ++   I R   Y+   V   +H      
Sbjct: 322 AKYRYEQLHADRVLYFIDSRQHQHL-------MMAWAIVRKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 192/354 (54%), Gaps = 53/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA++Q K  +    S  I+DL+ FY
Sbjct: 135 STIIGDAVVRTLEFLGHNVIRANHLGDWGTQFGMLIANMQRKEQEGTDVSMNISDLEGFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESK  +DEDE F K A   VV LQ  D    + W+ +  ++ +  Q+ YDRL+V+LT+ 
Sbjct: 195 RESKVLYDEDEEFGKTARNFVVRLQSGDEYCLEKWKQLVAITLKQNQRNYDRLSVSLTDD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLSGVVADLKEKGLAVESDGATVVYLDEYKNKDGEPMGVIIQKRDGGYLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H  +     +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYEQLHADRVLYFIDSRQHQHLMMAWAIVRKAGYV-PESVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE + R+   +++KN   EL+  E +   Q VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAVERANKLIEEKN--PELSAEEKANIAQTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           Y+DLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + A +   D   P
Sbjct: 432 YSDLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRANVELSDLTHP 485



 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 103/180 (57%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ EL+  E +   Q VA   +KY+DLS +R  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 407  EEKNPELSAEEKANIAQTVAMAAVKYSDLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI + A +   DL     + P+ +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFKRANVELSDL-----THPIVITDEKEQALLSKLLQFEEAVQSVAREGQPHLMCT 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + EG    V   RL LA  T+K +K+  D+L I T+ +M
Sbjct: 522  YLFELAGMFSSFYEACPILNAE-EG----VKQSRLKLALLTSKTIKQGLDLLGIETLERM 576



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 30/168 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +   +         L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVIDCL--------ELDGIAEKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI-- 164
           F+N+FL++ +  E+ ++ + +            ++VD+S+PN+A++      HL S I  
Sbjct: 82  FINIFLNKAWLAERGEEALKDERLAVNTETAQNIVVDYSAPNVAKE--MHVGHLRSTIIG 139

Query: 165 -----------HDILISKAIAEEEKKQG--ISSSSSSQTKGTAKKMNV 199
                      H+++ +  + +   + G  I++    + +GT   MN+
Sbjct: 140 DAVVRTLEFLGHNVIRANHLGDWGTQFGMLIANMQRKEQEGTDVSMNI 187


>gi|455645932|gb|EMF24975.1| arginyl-tRNA ligase [Citrobacter freundii GTC 09479]
          Length = 577

 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 209/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  + ++  + +     T   K  V+VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLAQHVQQALASDRLGVTQPAKQTVVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ALADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 186/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADID 477



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L     +  V +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDESAL----ANAQVIINEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     +   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENE----EIRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +     T   K  V+VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAQHVQQALASDRLGVTQPAKQTVVVDYSAPNVAKE 127


>gi|24113254|ref|NP_707764.1| arginyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|30063324|ref|NP_837495.1| arginyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|384543531|ref|YP_005727594.1| arginyl-tRNA synthetase [Shigella flexneri 2002017]
 gi|415854901|ref|ZP_11530440.1| arginyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|417723459|ref|ZP_12372272.1| arginyl-tRNA synthetase [Shigella flexneri K-304]
 gi|417728667|ref|ZP_12377376.1| arginyl-tRNA synthetase [Shigella flexneri K-671]
 gi|417733811|ref|ZP_12382466.1| arginyl-tRNA synthetase [Shigella flexneri 2747-71]
 gi|417743620|ref|ZP_12392152.1| arginyl-tRNA synthetase [Shigella flexneri 2930-71]
 gi|420342085|ref|ZP_14843574.1| arginyl-tRNA synthetase [Shigella flexneri K-404]
 gi|39932172|sp|Q83KQ3.1|SYR_SHIFL RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|24052255|gb|AAN43471.1| arginine tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|30041576|gb|AAP17304.1| arginine tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|281601317|gb|ADA74301.1| Arginyl-tRNA synthetase [Shigella flexneri 2002017]
 gi|313650080|gb|EFS14493.1| arginyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|332757309|gb|EGJ87646.1| arginyl-tRNA synthetase [Shigella flexneri 2747-71]
 gi|332757427|gb|EGJ87762.1| arginyl-tRNA synthetase [Shigella flexneri K-671]
 gi|332766600|gb|EGJ96804.1| arginyl-tRNA synthetase [Shigella flexneri 2930-71]
 gi|333017694|gb|EGK37006.1| arginyl-tRNA synthetase [Shigella flexneri K-304]
 gi|391267950|gb|EIQ26880.1| arginyl-tRNA synthetase [Shigella flexneri K-404]
          Length = 577

 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 212/392 (54%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GDT  R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDTAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDVFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 139/349 (39%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDT  R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDTAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDVFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|418465109|ref|ZP_13036046.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           RhAA1]
 gi|359756041|gb|EHK90200.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           RhAA1]
          Length = 577

 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 152/402 (37%), Positives = 219/402 (54%), Gaps = 46/402 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E+A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----VNPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLN----KKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N+FL   +  E I     N V+ P L      K  V+VD+SSPN+AKEMHVGHLRSTI
Sbjct: 82  FINIFLKDGWLAENIG----NAVKDPKLGIHHQDKQTVVVDYSSPNVAKEMHVGHLRSTI 137

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       + DL+AFY+ +
Sbjct: 138 IGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELRDLEAFYRAA 196

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER--- 475
           KK +DED IF ++A   VV LQ  D   +  W+ +  ++    Q  YDRLNVTLTE+   
Sbjct: 197 KKHYDEDPIFAEKARNYVVKLQSGDEYCRTMWQKLVKITMHQNQHNYDRLNVTLTEKDVM 256

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTS 530
           GES Y   +  +V  L+K+ L   DDG  +++      +D G + + + K DGGF Y T+
Sbjct: 257 GESLYNPMLPDIVEDLKKQALAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLYTTT 316

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVG 590
           D+AA + R E  KA+  +  +D  Q  H   ++++ +    I+R   Y+  D  +L H  
Sbjct: 317 DIAAAKYRYETLKANRALVFSDTRQSQH---MQQAWL----ITRKAGYV-PDSFQLEH-- 366

Query: 591 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 632
                FGM++   +D  P + T+S     L     E+ +R D
Sbjct: 367 ---KNFGMMLG--KDGKP-FKTRSGDTVKLADLLDEAIERAD 402



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 188/347 (54%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       + DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELRDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED IF ++A   VV LQ  D   +  W+ +  ++    Q  YDRLNVTLTE+
Sbjct: 194 RAAKKHYDEDPIFAEKARNYVVKLQSGDEYCRTMWQKLVKITMHQNQHNYDRLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPDIVEDLKKQALAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  +++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLEHKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSGDTVKL++LLDE + R+   +  K+  T L+  E ++  +AV  G +K
Sbjct: 373 LGKDGKPFKTRSGDTVKLADLLDEAIERADVLISQKS--TALSEQEKADVIEAVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + IN
Sbjct: 431 YADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSQIN 477



 Score =  133 bits (334), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 104/178 (58%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSEQEKADVIEAVGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + IN  ++  A    P++L  EKE  LA  LL+  + + LV +D   H LC YL
Sbjct: 468  RSIFNRSQINPGEVEQA----PLTLTDEKERVLAIKLLQFEEAIQLVAKDGVPHVLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + +     V   RL LA  T + +K+  D+L I+TV KM
Sbjct: 524  YELAGVFSSFYEHCPILNSEDQ----QVKLSRLKLALLTERTLKQGLDLLGIKTVEKM 577



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 21/110 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----VNPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLN----KKLRVLVDFSSPNIARK 152
           F+N+FL   +  E     I N V+ P L      K  V+VD+SSPN+A++
Sbjct: 82  FINIFLKDGWLAEN----IGNAVKDPKLGIHHQDKQTVVVDYSSPNVAKE 127


>gi|110805849|ref|YP_689369.1| arginyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|123146957|sp|Q0T3Q1.1|SYR_SHIF8 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|110615397|gb|ABF04064.1| arginine tRNA synthetase [Shigella flexneri 5 str. 8401]
          Length = 577

 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 212/392 (54%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GDT  R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDTAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 139/349 (39%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDT  R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDTAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN +  +   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPY--MPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN +  +   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKNPY--MPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|449327918|gb|AGE94219.1| arginyl-tRNA synthetase [Citrobacter amalonaticus Y19]
          Length = 577

 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 150/392 (38%), Positives = 210/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + ++  + +   GV  P    K  V++D+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAKHVEQALTSDRLGVAKPA---KQTVVIDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  R R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACARYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/350 (39%), Positives = 187/350 (53%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACARYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVSEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R +G++  D
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKSGLDESD 480



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVSEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R +G++  DL     +  V L  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKSGLDESDL----ANAKVQLSEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENE----EVRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +   GV  P    K  V++D+S+PN+A++
Sbjct: 82  FINIFLDPAFLAKHVEQALTSDRLGVAKPA---KQTVVIDYSAPNVAKE 127


>gi|377576210|ref|ZP_09805194.1| arginyl-tRNA synthetase [Escherichia hermannii NBRC 105704]
 gi|377542242|dbj|GAB50359.1| arginyl-tRNA synthetase [Escherichia hermannii NBRC 105704]
          Length = 576

 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/381 (38%), Positives = 206/381 (54%), Gaps = 46/381 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  T A+  A    G          +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQALLSDKVTQALIAA----GAPADCEPQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ + +        +  LA +  K+E+A PGF+N+FL   Y    ++  ++N 
Sbjct: 53  -MPPRQLAEQVLN--------HLDLAGIASKVEIAGPGFINIFLDPAYLSGLVESAVLNE 103

Query: 324 -----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
                 V P T      ++VD+S+PN+AKEMHVGHLRSTIIGD   R LE+LGH+V+R N
Sbjct: 104 RIGIPQVAPQT------IVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       +ADL+ FY+E+KK +DEDE F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KQQNENAGEMALADLEGFYREAKKHYDEDEAFAERARNYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  Y+RLNVTLT     GES Y   +  +V  L+ KG
Sbjct: 217 LQSGDEYCREMWRKLVDITMTQNQITYERLNVTLTRDDVMGESLYNPMLAGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGGF Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGFLYTTTDIACAKYRYETLHADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTII 568
           +Y  D  Q  H  L++  TI+
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV 352



 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 139/346 (40%), Positives = 184/346 (53%), Gaps = 54/346 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KQQNENAGEMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D   ++ W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARNYVVKLQSGDEYCREMWRKLVDITMTQNQITYERLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLAGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGFLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKLS+LLDE L R+   +  KN   ++   EL     AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLSDLLDEALERARRLVAAKN--PDMPADELEALANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ SI R AG+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSIFRKAGM 476



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 102/178 (57%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL     AV  G +KYADLS NR  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELEALANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI R AG+    L     + PV +  E+E ALA  LL+  + L  V R+   H +C YL
Sbjct: 468  LSIFRKAGMEESML-----TAPVKITEEREAALAARLLQFEETLTTVAREGTPHVMCAYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  ++EG    V   RL LA  TAK +K   D L I+TV +M
Sbjct: 523  YDVAGLFSGFYEHCPILTAESEG----VRQSRLKLALLTAKTLKIGLDTLGIQTVERM 576



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  T A+  A    G          +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQALLSDKVTQALIAA----GAPADCEPQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ + +        +  LA +  K+E A PGF+N+FL   Y    ++  ++N 
Sbjct: 53  -MPPRQLAEQVLN--------HLDLAGIASKVEIAGPGFINIFLDPAYLSGLVESAVLNE 103

Query: 128 -----GVQPPTLNKKLRVLVDFSSPNIARK 152
                 V P T      ++VD+S+PN+A++
Sbjct: 104 RIGIPQVAPQT------IVVDYSAPNVAKE 127


>gi|330445483|ref|ZP_08309135.1| arginyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489674|dbj|GAA03632.1| arginyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 576

 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 138/386 (35%), Positives = 212/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +   +         L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVIDCL--------DLDGIAEKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL++ +  E+ ++ + +            ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLNKAWLAERGEEALKDERLAVNTETAQNIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA++Q K  +    S  I+DL+ FY+ESK  +
Sbjct: 142 VVRTLEFLGHNVIRANHLGDWGTQFGMLIANMQRKEKEGADVSMNISDLEGFYRESKVLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DED  F + A   VV LQ  D    + W+ + +++ +  Q+ YDRLNV+LT+    GES 
Sbjct: 202 DEDAEFGETARNFVVRLQSGDEYCLEKWKQLVEITLKQNQRNYDRLNVSLTDDNVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L++KGL    DG  +++ +   ++   PM ++  K DGG+ Y T+D+A 
Sbjct: 262 YNDMLPGVVADLKEKGLAVESDGATVVYLDEYKNKDGEPMGVIIQKRDGGYLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E+  AD ++Y  D  Q  H  +  E       I R   Y+   V   +H      
Sbjct: 322 AKYRYEQLHADRVLYFIDSRQHQHLMMAWE-------IVRKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 193/354 (54%), Gaps = 53/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA++Q K  +    S  I+DL+ FY
Sbjct: 135 STIIGDAVVRTLEFLGHNVIRANHLGDWGTQFGMLIANMQRKEKEGADVSMNISDLEGFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESK  +DED  F + A   VV LQ  D    + W+ + +++ +  Q+ YDRLNV+LT+ 
Sbjct: 195 RESKVLYDEDAEFGETARNFVVRLQSGDEYCLEKWKQLVEITLKQNQRNYDRLNVSLTDD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPGVVADLKEKGLAVESDGATVVYLDEYKNKDGEPMGVIIQKRDGGYLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H  +  E  +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYEQLHADRVLYFIDSRQHQHLMMAWEIVRKAGYV-PESVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   +++KN   EL+  E +   Q VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAEERANKLIEEKN--PELSAEEKANIAQTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           Y+DLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + A +   D  +P
Sbjct: 432 YSDLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRANVELADLTQP 485



 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 101/180 (56%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ EL+  E +   Q VA   +KY+DLS +R  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 407  EEKNPELSAEEKANIAQTVAMAAVKYSDLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI + A +   DL     + P+ +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFKRANVELADL-----TQPIVITDEKEQALLSKLLQFEEAVQSVAREGQPHLMCT 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  D   K       RL LA  TAK +K+  D+L I T+ +M
Sbjct: 522  YLFELAGMFSSFYEACPILNADEATK-----QSRLKLAMLTAKTIKQGLDLLGIETLERM 576



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +   +         L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVIDCL--------DLDGIAEKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL++ +  E+ ++ + +            ++VD+S+PN+A++      HL S I
Sbjct: 82  FINIFLNKAWLAERGEEALKDERLAVNTETAQNIVVDYSAPNVAKE--MHVGHLRSTI 137


>gi|153828893|ref|ZP_01981560.1| arginyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|148875599|gb|EDL73734.1| arginyl-tRNA synthetase [Vibrio cholerae 623-39]
          Length = 599

 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 152/392 (38%), Positives = 214/392 (54%), Gaps = 46/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 303 FVNVFLSRVYAGEQIK----DIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FLS  +   Q +    DI +   Q  P T      ++ D+S+PN+AKEMHVGHLRS
Sbjct: 104 FINIFLSEEFLAAQAEAALADIRLGVAQEAPKT------IVADYSAPNVAKEMHVGHLRS 157

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+
Sbjct: 158 TIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYR 217

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER- 475
           ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT   
Sbjct: 218 ESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTREN 277

Query: 476 --GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   + Q+V  L+ KGL   DDG ++++ E   ++   PM ++  K DGGF Y 
Sbjct: 278 VMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLYT 337

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+  +V   +H
Sbjct: 338 TTDIACAKYRYETLGADRVLYFIDSRQ--HQHLMQAWIIV-----RKAGYIPENVSLEHH 390

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 391 A------FGMMLGKDGRPFKTRAGGTVRLADL 416



 Score =  220 bits (560), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 157 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 216

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 217 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 276

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + Q+V  L+ KG                         + + K+ G    
Sbjct: 277 NVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDGEPMGVIIQKRDGGFLY 336

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 337 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWIIVRKAGYI-PENVSLEHHAFGMM 395

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 396 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PELSAEEKANIANTVAMAAVK 453

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 454 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 500



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 429  ESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 488

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 489  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 543

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+   +L I T+ +M
Sbjct: 544  YLFELAGIFSSFYEACPILVAEQE----SIKQSRLKLAALTAKTIKQGLALLGIDTLERM 599



 Score = 44.3 bits (103), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 27/124 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 57  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLDGIASKTEIAGPG 103

Query: 107 FVNVFLS----RVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+FLS       A   + DI +   Q  P T      ++ D+S+PN+A++      HL
Sbjct: 104 FINIFLSEEFLAAQAEAALADIRLGVAQEAPKT------IVADYSAPNVAKE--MHVGHL 155

Query: 161 PSQI 164
            S I
Sbjct: 156 RSTI 159


>gi|417702488|ref|ZP_12351605.1| arginyl-tRNA synthetase [Shigella flexneri K-218]
 gi|417738790|ref|ZP_12387374.1| arginyl-tRNA synthetase [Shigella flexneri 4343-70]
 gi|418256447|ref|ZP_12880418.1| arginyl-tRNA synthetase [Shigella flexneri 6603-63]
 gi|420372755|ref|ZP_14872963.1| arginyl-tRNA synthetase [Shigella flexneri 1235-66]
 gi|332756015|gb|EGJ86368.1| arginyl-tRNA synthetase [Shigella flexneri 4343-70]
 gi|333003263|gb|EGK22809.1| arginyl-tRNA synthetase [Shigella flexneri K-218]
 gi|391317932|gb|EIQ75172.1| arginyl-tRNA synthetase [Shigella flexneri 1235-66]
 gi|397897891|gb|EJL14289.1| arginyl-tRNA synthetase [Shigella flexneri 6603-63]
          Length = 577

 Score =  233 bits (594), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 212/392 (54%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GDT  R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDTAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 139/349 (39%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGDT  R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDTAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|387121890|ref|YP_006287773.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|416034780|ref|ZP_11573372.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype a str. H5P1]
 gi|416043983|ref|ZP_11574841.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype d str. I63B]
 gi|429733894|ref|ZP_19267946.1| arginine--tRNA ligase [Aggregatibacter actinomycetemcomitans Y4]
 gi|347996679|gb|EGY37738.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype d str. I63B]
 gi|347997762|gb|EGY38732.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype a str. H5P1]
 gi|385876382|gb|AFI87941.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|429154074|gb|EKX96828.1| arginine--tRNA ligase [Aggregatibacter actinomycetemcomitans Y4]
          Length = 577

 Score =  233 bits (594), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 131/326 (40%), Positives = 187/326 (57%), Gaps = 22/326 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ + S           L  + +K E+A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLS--------KAELQDIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E I + + +         K  V+VD+SSPN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +KK +
Sbjct: 142 VVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFYRAAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTL E+   GES 
Sbjct: 201 DEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLAEKDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L+K+GL   DDG  +++      +D G + + + K DGGF Y T+D+AA
Sbjct: 261 YNPMLPGIVEDLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFR 560
            + R E  KA   +  +D  Q  H +
Sbjct: 321 AKYRYETLKASRALVFSDTRQSQHMQ 346



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 197/365 (53%), Gaps = 54/365 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTL E+
Sbjct: 194 RAAKKHYDEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLAEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPGIVEDLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  ++++  FG++
Sbjct: 314 TTTDIAAAKYRYETLKASRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLEYKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSGDTVKL++LLDE + R+   +  K+  T L+  E ++  +AV  G +K
Sbjct: 373 LGKDGKPFKTRSGDTVKLADLLDEAIERAGVLISQKS--TALSEQEKADVIEAVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + IN  +  +   + + 
Sbjct: 431 YADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSQINPAEVEQASLTLTN 490

Query: 875 VEDRC 879
            ++R 
Sbjct: 491 EKERA 495



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSEQEKADVIEAVGIGSVKYADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + IN  ++  A+    ++L +EKE ALA  LL+  + + LV +D   H LC YL
Sbjct: 468  RSIFNRSQINPAEVEQAS----LTLTNEKERALAIKLLQFEEAIQLVAKDGTPHILCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + +     V   RL LA  T + +K+  D+L I+TV +M
Sbjct: 524  YELAGVFSSFYEHCPILNNEDQ----QVKLSRLKLALLTERTLKQGLDLLGIKTVERM 577



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ + S           L  + +K E A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLS--------KAELQDIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E + + + +         K  V+VD+SSPN+A++
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKE 127


>gi|410622346|ref|ZP_11333183.1| arginyl-tRNA synthetase [Glaciecola pallidula DSM 14239 = ACAM 615]
 gi|410158091|dbj|GAC28557.1| arginyl-tRNA synthetase [Glaciecola pallidula DSM 14239 = ACAM 615]
          Length = 577

 Score =  233 bits (594), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/367 (38%), Positives = 203/367 (55%), Gaps = 26/367 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++ + LS  F+HA+Q     +G   A +  +       FG++Q N AMAL K  K K  
Sbjct: 1   MNIHNLLSARFSHAIQA----MGIDDARIPLSRSTR-PDFGEYQFNGAMALAKQLKQK-- 53

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P DIA+ I +        N  L  +  K+EVA PGF+N++L   +     +  + + 
Sbjct: 54  ---PRDIAEQILA--------NVKLDDIASKLEVAGPGFINIYLKDEWLSAWCERALQDK 102

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                 ++   ++VD+SSPN+AKEMHVGHLRSTIIGD +  +LEYLGH V+R NH+GDWG
Sbjct: 103 KLTIEAHESKTIVVDYSSPNLAKEMHVGHLRSTIIGDAVVNVLEYLGHKVIRQNHMGDWG 162

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGML+AHL DK          ++DL+ FY+E+K RFD ++ F  RA   VV LQ  D 
Sbjct: 163 TQFGMLLAHLNDKLQKSSFAETALSDLEDFYREAKVRFDNEDGFADRARDYVVQLQSGDS 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDD 501
                W+   D+S +  + +Y +LNV+L      GES Y   +  ++  L +KG+     
Sbjct: 223 ACLALWQQFIDISIQHSEDVYKKLNVSLKREHIMGESSYNHDLANVLSDLTEKGIAVECQ 282

Query: 502 GRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G K+++  +     G   + IV KS GG+ Y T+DLAAIR R  + KA   +  TD  Q 
Sbjct: 283 GAKVVFMPEMINKEGEPAVYIVQKSGGGYLYATTDLAAIRYRASQLKAQRTLIFTDARQA 342

Query: 557 VHFRLLE 563
           +HF+  E
Sbjct: 343 LHFKQTE 349



 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 181/344 (52%), Gaps = 53/344 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD +  +LEYLGH V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY
Sbjct: 134 STIIGDAVVNVLEYLGHKVIRQNHMGDWGTQFGMLLAHLNDKLQKSSFAETALSDLEDFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K RFD ++ F  RA   VV LQ  D      W+   D+S +  + +Y +LNV+L   
Sbjct: 194 REAKVRFDNEDGFADRARDYVVQLQSGDSACLALWQQFIDISIQHSEDVYKKLNVSLKRE 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLGIVYV- 717
              GES Y   +  ++  L +KG                        + + +K G  Y+ 
Sbjct: 254 HIMGESSYNHDLANVLSDLTEKGIAVECQGAKVVFMPEMINKEGEPAVYIVQKSGGGYLY 313

Query: 718 -----------------------TDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                                  TD  Q +HF+  E  A+KAG L+ N +  +   FG++
Sbjct: 314 ATTDLAAIRYRASQLKAQRTLIFTDARQALHFKQTEIVARKAGYLSANDS-YEHCPFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K F+TRSG T+KLS+LLDE + R+   +    R + L+ +      + V  G +K
Sbjct: 373 LGKDNKPFRTRSGQTIKLSDLLDEAIERA--AVLISQRESGLSISAKQHVAETVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           YADLS NR  DY+F ++ ML   GNTA YL YAYTR+ SI R A
Sbjct: 431 YADLSKNRTTDYIFDWNTMLSFEGNTAPYLQYAYTRVKSIFRNA 474



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 93/178 (52%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R + L+ +      + V  G +KYADLS NR  DY+F ++ ML   GNTA YL YAYTR+
Sbjct: 408  RESGLSISAKQHVAETVGIGAVKYADLSKNRTTDYIFDWNTMLSFEGNTAPYLQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI R A     D   AA S     EH+    L   L++ ++VL  V ++   H +C YL
Sbjct: 468  KSIFRNAQ-QDMDTYFAAVSVVSIQEHD----LVVKLMQFDEVLESVCKEATPHIMCAYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y++++ F  FY+    ++ +   K +     RL L   TAK +K   DIL I T+  M
Sbjct: 523  YEVASLFMRFYEANPVLKPEVGEKDR---NSRLGLCALTAKTLKAGLDILGIDTLEAM 577



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 18/144 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++ + LS  F+HA+Q     +G   A +  +       FG++Q N AMAL K  K K  
Sbjct: 1   MNIHNLLSARFSHAIQA----MGIDDARIPLSRSTR-PDFGEYQFNGAMALAKQLKQK-- 53

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
              P DIA+ I +        N  L  +  K+E A PGF+N++L   +     +  + + 
Sbjct: 54  ---PRDIAEQILA--------NVKLDDIASKLEVAGPGFINIYLKDEWLSAWCERALQDK 102

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
                 ++   ++VD+SSPN+A++
Sbjct: 103 KLTIEAHESKTIVVDYSSPNLAKE 126


>gi|39932107|sp|Q7VP38.1|SYR_HAEDU RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|33147727|gb|AAP95249.1| arginyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 561

 Score =  233 bits (594), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 135/332 (40%), Positives = 196/332 (59%), Gaps = 34/332 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AMA  K         NP + AQ I          N  ++ ++DK+E+A PG
Sbjct: 21  EFGDYQANGAMAAAKK-----LAMNPREFAQKILD--------NLDVSDMVDKLEIAGPG 67

Query: 303 FVNVFLSRVYAGEQIK------DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL   +  +Q        +  +   QP T      +L+D+SSPN+AKEMHVGHLRS
Sbjct: 68  FINIFLKPSWLAKQANFALQAVNFGIKTAQPQT------ILIDYSSPNVAKEMHVGHLRS 121

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+
Sbjct: 122 TIIGDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEQASEMQLSDLEAFYR 180

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER- 475
            +K+ +D D+IF ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTLTE+ 
Sbjct: 181 AAKESYDSDQIFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLTEKD 240

Query: 476 --GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYD 528
             GES Y   + ++V  L+ KGL   D+G  +++      +D   + + I KSDGGF Y 
Sbjct: 241 VMGESLYNPMLPEIVADLKAKGLAVEDNGAVVVFLDEFKNKDGDPMGVIIQKSDGGFLYT 300

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           T+D+AA + R E  K D  +  +D  Q  H +
Sbjct: 301 TTDIAAAKYRYETLKVDRALVFSDSRQAQHMQ 332



 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 145/362 (40%), Positives = 196/362 (54%), Gaps = 60/362 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG++V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 121 STIIGDAVVRTLEFLGNNVIRANHVGDWGTQFGMLIAYLE-KMENEQASEMQLSDLEAFY 179

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+ +D D+IF ++A   VV LQ  D   +  W+ + D++    Q+ YDRLNVTLTE+
Sbjct: 180 RAAKESYDSDQIFAEKARNYVVKLQSGDEYCRTMWKKLVDITMHHNQENYDRLNVTLTEK 239

Query: 685 ---GESFYQKHMEQLVPYLEKKG-----NLSLTKKL--------------------GIVY 716
              GES Y   + ++V  L+ KG     N ++   L                    G +Y
Sbjct: 240 DVMGESLYNPMLPEIVADLKAKGLAVEDNGAVVVFLDEFKNKDGDPMGVIIQKSDGGFLY 299

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P    ++   FG++
Sbjct: 300 TTTDIAAAKYRYETLKVDRALVFSDSRQAQHMQQAWLITRKAGYV-PASFSLEHPFFGMM 358

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TVKL +LLDE + R+ DKL    R T LT  E S   +AVA G +K
Sbjct: 359 LGKDGKPFKTRSGGTVKLKDLLDEAVERA-DKLISA-RSTNLTVAEKSAVVEAVAIGSVK 416

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           Y+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   A I      +PD    E
Sbjct: 417 YSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRIRSIFARAEI------DPDTLTGE 470

Query: 875 VE 876
           ++
Sbjct: 471 MQ 472



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 102/178 (57%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R T LT  E S   +AVA G +KY+DLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 394  RSTNLTVAEKSAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMQYAYTRI 453

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   A I+ + L     +  + L  EKE  LA  LL+  + L  V ++   H LC+YL
Sbjct: 454  RSIFARAEIDPDTL-----TGEMQLTEEKERTLALKLLQFEEALTAVAKEGMPHILCQYL 508

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY+ C  +  D     + +   RL LA  TAK +K+  D+L I+TV KM
Sbjct: 509  YELAGIFSSFYEACPMLNAD-----EAIKHSRLRLASLTAKTLKQGLDLLGIKTVEKM 561



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 25/112 (22%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AMA  K         NP + AQ I          N  ++ ++DK+E A PG
Sbjct: 21  EFGDYQANGAMAAAKK-----LAMNPREFAQKILD--------NLDVSDMVDKLEIAGPG 67

Query: 107 FVNVFLSRVYAGEQMK------DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  +Q        +  +   QP T      +L+D+SSPN+A++
Sbjct: 68  FINIFLKPSWLAKQANFALQAVNFGIKTAQPQT------ILIDYSSPNVAKE 113


>gi|333898619|ref|YP_004472492.1| arginyl-tRNA synthetase [Pseudomonas fulva 12-X]
 gi|333113884|gb|AEF20398.1| Arginyl-tRNA synthetase [Pseudomonas fulva 12-X]
          Length = 579

 Score =  233 bits (594), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 151/404 (37%), Positives = 222/404 (54%), Gaps = 42/404 (10%)

Query: 206 SVRDYLSDVFTH-AVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           S+R  +    T    +   P+    T  V +T +K     GDF  N AM L K    K  
Sbjct: 4   SIRHLIQQALTRLTAEGVLPDGLSPTIQVENTRDK---THGDFASNIAMMLAKPAGMK-- 58

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P D+AQ +   +       P+ A+ I K+E+A PGF+N F +     E+++  + + 
Sbjct: 59  ---PRDLAQKLIDAL-------PADAQ-ISKVEIAGPGFLNFFQNSDALAERLEAALADD 107

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GV+        RV+VD SSPN+AKEMHVGHLRSTIIGD ++R+LE+LG +V+R NHVG
Sbjct: 108 HLGVRKN--GPAQRVVVDLSSPNLAKEMHVGHLRSTIIGDAVARVLEFLGDEVIRQNHVG 165

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGML+A +++   +       +ADL+ FY+ +KKRFDE   F +RA   VV LQ 
Sbjct: 166 DWGTQFGMLLAFMEE---NPAAAESELADLEGFYRAAKKRFDESPEFAERARALVVELQA 222

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            +P+  + W     +S    QK YDRL V LT    +GES Y   +  +V  L  KGLL 
Sbjct: 223 GEPECMRLWNRFNAISLSHCQKAYDRLGVKLTPADVKGESAYNADLANVVADLRSKGLLT 282

Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            D+G + ++       +   +P+ + K+ GG+ Y T+DLAA+R R +  KAD  +Y  D 
Sbjct: 283 EDNGAQCVFLDEYKNAEGNPLPVIVQKAGGGYLYSTTDLAAMRYRSQVLKADRALYFVDQ 342

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            Q +HF++  E       ++R   ++ H+ + L H+G +GT  G
Sbjct: 343 RQALHFQMAFE-------VARRAGFV-HEGMDLEHMG-FGTMNG 377



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/350 (39%), Positives = 187/350 (53%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG +V+R NHVGDWGTQFGML+A +++   +       +ADL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDEVIRQNHVGDWGTQFGMLLAFMEE---NPAAAESELADLEGFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F +RA   VV LQ  +P+  + W     +S    QK YDRL V LT  
Sbjct: 197 RAAKKRFDESPEFAERARALVVELQAGEPECMRLWNRFNAISLSHCQKAYDRLGVKLTPA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   +  +V  L  KG L+                       + +K G     
Sbjct: 257 DVKGESAYNADLANVVADLRSKGLLTEDNGAQCVFLDEYKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q +HF++  E A++AG ++     ++ +GFG +
Sbjct: 317 STTDLAAMRYRSQVLKADRALYFVDQRQALHFQMAFEVARRAGFVHEGMD-LEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE   R+ + +K KN   EL   EL +  +AV  G +K
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLDEAESRAYELVKAKN--PELDEAELRQIARAVGIGAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS +R  DY F+F+ ML   GNTA YLLYAYTR ASI R  G   ED
Sbjct: 434 YADLSKHRTSDYSFNFELMLSFEGNTAPYLLYAYTRTASIFRKLGKGIED 483



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 96/175 (54%), Gaps = 11/175 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+ + +K KN   EL   EL +  +AV  G +KYADLS +R  DY F+F+ ML   GNTA
Sbjct: 403  RAYELVKAKN--PELDEAELRQIARAVGIGAVKYADLSKHRTSDYSFNFELMLSFEGNTA 460

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR ASI R  G   ED+        + L   +E  LA  L +  +VL  V   
Sbjct: 461  PYLLYAYTRTASIFRKLGKGIEDI-----GGHIELHAPQEIELAGKLAQFGEVLGSVADK 515

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
               H LC YLYD++  FS FY++C  +  + EG  ++    RL LA  T + +K+
Sbjct: 516  GTPHLLCAYLYDVAGLFSSFYEHCPVLSAEDEGTRQS----RLRLAALTRRTLKQ 566



 Score = 46.2 bits (108), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 22/147 (14%)

Query: 10  SVRDYLSDVFTH-AVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           S+R  +    T    +   P+    T  V +T +K     GDF  N AM L K    K  
Sbjct: 4   SIRHLIQQALTRLTAEGVLPDGLSPTIQVENTRDK---THGDFASNIAMMLAKPAGMK-- 58

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P D+AQ +   +       P+ A+ I K+E A PGF+N F +     E+++  + + 
Sbjct: 59  ---PRDLAQKLIDAL-------PADAQ-ISKVEIAGPGFLNFFQNSDALAERLEAALADD 107

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             GV+        RV+VD SSPN+A++
Sbjct: 108 HLGVRKN--GPAQRVVVDLSSPNLAKE 132


>gi|262404425|ref|ZP_06080980.1| arginyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262349457|gb|EEY98595.1| arginyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 597

 Score =  233 bits (594), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 55  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 101

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 102 FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 161

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 162 VVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQKESGEISMELSDLEAFYRESKKLY 221

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 222 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 281

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+ KGL   DDG ++++    +++   PM ++  K DGGF Y T+D+A 
Sbjct: 282 YNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFQNKDGEPMGVIVQKRDGGFLYTTTDIAC 341

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 342 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPEQVSLEHHA----- 389

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 390 -FGMMLGKDGRPFKTRAGGTVRLADL 414



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 188/347 (54%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY
Sbjct: 155 STIIGDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQKESGEISMELSDLEAFY 214

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 215 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 274

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + K+ G    
Sbjct: 275 NVMGESMYNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFQNKDGEPMGVIVQKRDGGFLY 334

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 335 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PEQVSLEHHAFGMM 393

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 394 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PELSTEEKANIANTVAMAAVK 451

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 452 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 498



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 427  ESKNPELSTEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 486

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++   L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 487  RVASVFAKAGVDMTQL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 541

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 542  YLFELAGIFSSFYEACPILVAEQE----SVKQSRLKLAALTAKTIKQGLALLGIETLERM 597



 Score = 44.3 bits (103), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 55  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 101

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 102 FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKE 147


>gi|381404236|ref|ZP_09928920.1| arginyl-tRNA synthetase [Pantoea sp. Sc1]
 gi|380737435|gb|EIB98498.1| arginyl-tRNA synthetase [Pantoea sp. Sc1]
          Length = 576

 Score =  233 bits (594), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 147/399 (36%), Positives = 224/399 (56%), Gaps = 44/399 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAEAVIQ--------HLDLTGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  +  ++ +     GVQ   L +   ++VD+S+PN+AKEMHVGH+RSTII
Sbjct: 82  FINIFLDHAWLAKHAREALSLPRLGVQ---LAEPQTIVVDYSAPNVAKEMHVGHVRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+AFY+E+K
Sbjct: 139 GDAAVRTLEFLGHRVIRANHVGDWGTQFGMLIAFLEKQQNENHAEM-ALADLEAFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           + +DED  F +RA   VV LQ  DP  ++ W+ + D++    QKIYDR+NVTLT     G
Sbjct: 198 RTYDEDPEFAERARSYVVKLQGGDPYCREMWKKLVDITMSQNQKIYDRMNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L++KGL    +G  +++    +++   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNDMLPGIVADLKQKGLAVESEGATVVFLDEFQNKEGEPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E  KAD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H   
Sbjct: 318 IACAKYRYETLKADRVLYYIDSRQ--HQHLVQAWTIV-----RKAGYVPESVPLEHHA-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
               FGM++   +D  P + T+S     L     E+ +R
Sbjct: 369 ----FGMMLG--KDGRP-FKTRSGGTIKLSDLLDEAYQR 400



 Score =  226 bits (577), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 192/349 (55%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+AFY
Sbjct: 135 STIIGDAAVRTLEFLGHRVIRANHVGDWGTQFGMLIAFLEKQQNENHAEMA-LADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K+ +DED  F +RA   VV LQ  DP  ++ W+ + D++    QKIYDR+NVTLT  
Sbjct: 194 REAKRTYDEDPEFAERARSYVVKLQGGDPYCREMWKKLVDITMSQNQKIYDRMNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVADLKQKGLAVESEGATVVFLDEFQNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLKADRVLYYIDSRQHQHLVQAWTIVRKAGYV-PESVPLEHHAFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T+KLS+LLDE  +R+   +++KN   E++  E+    + V    +K
Sbjct: 373 LGKDGRPFKTRSGGTIKLSDLLDEAYQRAYTLVREKN--PEMSEAEVKTLAEVVGISAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI+++
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIDAD 479



 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   +++KN   E++  E+    + V    +KYADLS +R  DY+F +D ML   GNT
Sbjct: 399  QRAYTLVREKN--PEMSEAEVKTLAEVVGISAVKYADLSKSRTTDYIFDWDNMLAFEGNT 456

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A Y+ YAYTR+ S+ R AGI+++ L        + +  E+E  LA  LL+  +++  V R
Sbjct: 457  APYMQYAYTRVLSVFRKAGIDADSL-----DAEIVISEEREAQLATRLLQFEEIITQVAR 511

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
            D   H +C YLYD++  FS FY++C  +  ++E    +    RL LA  TAK +K+  D 
Sbjct: 512  DGTPHVMCAYLYDLAGLFSGFYEHCPILTAESE----STRLSRLQLAALTAKTLKQGLDT 567

Query: 1111 LNIRTVHKM 1119
            L I TV +M
Sbjct: 568  LGIDTVERM 576



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAEAVIQ--------HLDLTGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIV---NGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  +  ++ +     GVQ   L +   ++VD+S+PN+A++
Sbjct: 82  FINIFLDHAWLAKHAREALSLPRLGVQ---LAEPQTIVVDYSAPNVAKE 127


>gi|262170936|ref|ZP_06038614.1| arginyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|261892012|gb|EEY37998.1| arginyl-tRNA synthetase [Vibrio mimicus MB-451]
          Length = 577

 Score =  233 bits (593), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQKESGEISMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+ KGL   DDG ++++    +++   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFQNKDGEPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPEQVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  219 bits (557), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 189/347 (54%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQKESGEISMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFQNKDGEPMGVIVQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PEQVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   +L+  E ++    VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PDLSADEKAKIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 478



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ +L+  E ++    VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPDLSADEKAKIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGIFSSFYEACPILVAEQE----SVKQSRLKLAALTAKTIKQGLALLGIETLERM 577



 Score = 44.3 bits (103), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|348029694|ref|YP_004872380.1| arginyl-tRNA synthetase [Glaciecola nitratireducens FR1064]
 gi|347947037|gb|AEP30387.1| arginyl-tRNA synthetase [Glaciecola nitratireducens FR1064]
          Length = 577

 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 141/367 (38%), Positives = 199/367 (54%), Gaps = 26/367 (7%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++   LS  F  AVQ     +G + A +  +       FG++Q N AMAL K  K K  
Sbjct: 1   MNIHHLLSARFAQAVQA----MGIQDAPIPLSRSTR-PDFGEYQFNGAMALAKQLKQK-- 53

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P DIA+ I +        N  L  V  K+E+A PGF+N+ L   +     +  + + 
Sbjct: 54  ---PRDIAEQILA--------NVKLDDVASKLEIAGPGFINIHLKNEWLSAWCERALQDS 102

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
                 ++   ++VD+SSPN+AKEMHVGHLRSTIIGD +  +LEYLGH V+R NH+GDWG
Sbjct: 103 KLTIEPHESKTIVVDYSSPNLAKEMHVGHLRSTIIGDAVVNVLEYLGHHVIRQNHMGDWG 162

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGML+AHL DK          ++DL+ FY+E+K RFD +  F  RA   VV LQ  D 
Sbjct: 163 TQFGMLLAHLNDKLKSSSVAETALSDLEDFYREAKVRFDNEAGFADRARDYVVQLQGGDA 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDD 501
              K W+   D+S +  +++Y +LNV+L      GES Y   +  ++  L +KG++  D 
Sbjct: 223 ACLKLWQQFIDISIQHSEEVYKKLNVSLKREHIMGESSYNPDLVNVLADLTEKGIVVEDQ 282

Query: 502 GRKI-----MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
           G K+     M  +D       + KS GG+ Y T+DLAAIR R  +  A   +  TD  Q 
Sbjct: 283 GAKVVFIPEMSNKDGDPAVYIVQKSGGGYLYATTDLAAIRYRANQLHAQRTLIFTDNRQA 342

Query: 557 VHFRLLE 563
           +HF+  E
Sbjct: 343 LHFKQTE 349



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 181/344 (52%), Gaps = 53/344 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD +  +LEYLGH V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY
Sbjct: 134 STIIGDAVVNVLEYLGHHVIRQNHMGDWGTQFGMLLAHLNDKLKSSSVAETALSDLEDFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K RFD +  F  RA   VV LQ  D    K W+   D+S +  +++Y +LNV+L   
Sbjct: 194 REAKVRFDNEAGFADRARDYVVQLQGGDAACLKLWQQFIDISIQHSEEVYKKLNVSLKRE 253

Query: 685 ---GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
              GES Y   +  ++  L +KG +   +   +V++                        
Sbjct: 254 HIMGESSYNPDLVNVLADLTEKGIVVEDQGAKVVFIPEMSNKDGDPAVYIVQKSGGGYLY 313

Query: 718 -----------------------TDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                                  TD  Q +HF+  E  A+KAG L  + +  +   FG++
Sbjct: 314 ATTDLAAIRYRANQLHAQRTLIFTDNRQALHFKQTEIVARKAGYLAESDS-YEHCPFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG+T+KLS+LLDE + R+  ++    R + L+     +    V  G +K
Sbjct: 373 LGKDNKPFKTRSGETIKLSDLLDEAIERA--EVLISQRESSLSADAKKQVAATVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           YADLS NR  DY+F +D ML   GNTA YL YAYTR+ SI R A
Sbjct: 431 YADLSKNRTTDYIFDWDTMLSFEGNTAPYLQYAYTRVKSIFRNA 474



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 94/178 (52%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R + L+     +    V  G +KYADLS NR  DY+F +D ML   GNTA YL YAYTR+
Sbjct: 408  RESSLSADAKKQVAATVGIGAVKYADLSKNRTTDYIFDWDTMLSFEGNTAPYLQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI R A    +D+     S  VS+   +E  L   L++ ++VL  V ++   H +C YL
Sbjct: 468  KSIFRNA---KQDMDTYQAS--VSVASVQEHDLVVKLMQFDEVLEAVCKEATPHIMCTYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y++++ F  FY+    ++     + +   + RL L   TAK +K   +IL I T+  M
Sbjct: 523  YEVASLFMRFYEANPVLKPQVSEEDR---SSRLGLCALTAKTLKVGLEILGIDTLEAM 577



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 18/144 (12%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++   LS  F  AVQ     +G + A +  +       FG++Q N AMAL K  K K  
Sbjct: 1   MNIHHLLSARFAQAVQA----MGIQDAPIPLSRSTR-PDFGEYQFNGAMALAKQLKQK-- 53

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
              P DIA+ I +        N  L  V  K+E A PGF+N+ L   +     +  + + 
Sbjct: 54  ---PRDIAEQILA--------NVKLDDVASKLEIAGPGFINIHLKNEWLSAWCERALQDS 102

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
                 ++   ++VD+SSPN+A++
Sbjct: 103 KLTIEPHESKTIVVDYSSPNLAKE 126


>gi|244539400|dbj|BAH83443.1| arginyl-tRNA synthetase [Candidatus Ishikawaella capsulata Mpkobe]
          Length = 576

 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 138/358 (38%), Positives = 205/358 (57%), Gaps = 30/358 (8%)

Query: 214 VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 273
           V +  +Q A    G KT  ++  N     KFGD+Q N  +A+ K  K     K P+ +A+
Sbjct: 6   VLSQEIQKAMFLTGIKTDYISEVNYCNNPKFGDYQFNGIIAIAKKLK-----KAPYQLAR 60

Query: 274 SIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTL--- 330
                   E+ TN +L  +  K+E+A PGF+N+FL   +  +QI       ++ P L   
Sbjct: 61  --------EVVTNLNLNYIAKKVEIAHPGFINIFLKPTWLVQQI----YYALKKPYLGID 108

Query: 331 -NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
                 +++D+SSPNIAK+MHVGHLRST+IGD +SR L +LGH+V+R+NHVGDWGTQFGM
Sbjct: 109 STHHQTIVIDYSSPNIAKQMHVGHLRSTLIGDAVSRTLSFLGHNVIRVNHVGDWGTQFGM 168

Query: 390 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA 449
           LIA+++     Y  ++  + +L+  Y+ +K  +D+DE F K A   VV LQ+ D D    
Sbjct: 169 LIAYIKHNKIQYF-ENFSLENLEYLYRCAKDFYDKDEKFAKSARNYVVLLQKGDADCICI 227

Query: 450 WEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLELDDGRKIM 506
           W+ +  ++ +  QKIYDRLNV+LT +   GES YQ  +  ++  L +KG+     G  I+
Sbjct: 228 WKKMIYITMQQNQKIYDRLNVSLTSKNIMGESLYQDMLPDIISDLIQKGIATKHAGAVIV 287

Query: 507 WGEDRGS-----IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
             ED  +     + + I K DG + Y T+D+A  + R E+ KAD I+Y  D  Q  HF
Sbjct: 288 LLEDVKNKEGQQMGVIIQKQDGAYLYTTTDIACAKYRYEKFKADRILYYVDSRQHQHF 345



 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 184/346 (53%), Gaps = 54/346 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD +SR L +LGH+V+R+NHVGDWGTQFGMLIA+++     Y  ++  + +L+  Y
Sbjct: 135 STLIGDAVSRTLSFLGHNVIRVNHVGDWGTQFGMLIAYIKHNKIQYF-ENFSLENLEYLY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K  +D+DE F K A   VV LQ+ D D    W+ +  ++ +  QKIYDRLNV+LT +
Sbjct: 194 RCAKDFYDKDEKFAKSARNYVVLLQKGDADCICIWKKMIYITMQQNQKIYDRLNVSLTSK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES YQ  +  ++  L +KG                         + + K+ G    
Sbjct: 254 NIMGESLYQDMLPDIISDLIQKGIATKHAGAVIVLLEDVKNKEGQQMGVIIQKQDGAYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              I+Y  D  Q  HF    +  +KAG + P    ++    G+V
Sbjct: 314 TTTDIACAKYRYEKFKADRILYYVDSRQHQHFMQTWDIVRKAGYV-PENVSLEHHSIGMV 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           L +D + FKTRSG T++LS+LLDE   R+L  L+ KN    +T  +L +  + +    IK
Sbjct: 373 LSKDGRPFKTRSGSTIRLSDLLDEAYERALILLRKKN--INMTEKKLKKLAEILGISAIK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           YA+L  NR  DY F++D M+   GNTA YL YA TRI S+ R A I
Sbjct: 431 YAELCKNRTTDYRFNWDNMISFEGNTAPYLQYACTRIFSLFRKAKI 476



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 99/188 (52%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  L+ KN    +T  +L +  + +    IKYA+L  NR  DY F++D M+   GNTA
Sbjct: 400  RALILLRKKN--INMTEKKLKKLAEILGISAIKYAELCKNRTTDYRFNWDNMISFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YL YA TRI S+ R A I  +++     +  V L+ + E +L   L++  ++L+ V +D
Sbjct: 458  PYLQYACTRIFSLFRKAKIEIDNI-----TGKVFLDTKYEISLVTRLIQFEEILVQVGKD 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLY+++  FS FY+ C  +  +      ++   RL +A  T K + K  D L
Sbjct: 513  GTPHIMCNYLYELAELFSLFYEKCPILSAEDN----SIRQSRLKIAALTVKTLTKGLDTL 568

Query: 1112 NIRTVHKM 1119
             I  V  M
Sbjct: 569  GINVVKNM 576



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 21/139 (15%)

Query: 18  VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 77
           V +  +Q A    G KT  ++  N     KFGD+Q N  +A+ K  K     K P+ +A+
Sbjct: 6   VLSQEIQKAMFLTGIKTDYISEVNYCNNPKFGDYQFNGIIAIAKKLK-----KAPYQLAR 60

Query: 78  SIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTL--- 134
                   E+ TN +L  +  K+E A PGF+N+FL   +  +Q    I   ++ P L   
Sbjct: 61  --------EVVTNLNLNYIAKKVEIAHPGFINIFLKPTWLVQQ----IYYALKKPYLGID 108

Query: 135 -NKKLRVLVDFSSPNIARK 152
                 +++D+SSPNIA++
Sbjct: 109 STHHQTIVIDYSSPNIAKQ 127


>gi|387769477|ref|ZP_10125740.1| arginine--tRNA ligase [Pasteurella bettyae CCUG 2042]
 gi|386906786|gb|EIJ71511.1| arginine--tRNA ligase [Pasteurella bettyae CCUG 2042]
          Length = 576

 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 130/330 (39%), Positives = 198/330 (60%), Gaps = 30/330 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K        +NP + AQ + +        N  L+++ +K E+A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----QNPREFAQKVLN--------NVDLSEIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKL----RVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N+FL++ +  + + DI    +  P    K+     V++D+SSPN+AKEMHVGHLRSTI
Sbjct: 82  FINIFLNKDWVAKNV-DI---ALAVPNFGIKVAHPQTVVIDYSSPNVAKEMHVGHLRSTI 137

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD ++R LE++G+ V+R NHVGDWGTQFGMLIA+L+ K  +    +  ++DL+AFY+ +
Sbjct: 138 IGDAVARALEFMGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHADAMELSDLEAFYRAA 196

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER--- 475
           K+ +D DE F  +A   VV LQ  D   +  W+ + D++ +  Q+ YDRLNVTLTE+   
Sbjct: 197 KEHYDSDEAFAVKARSYVVKLQSGDTYCRTMWKKLVDMTMQQNQRNYDRLNVTLTEKDVM 256

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTS 530
           GES Y   +  +V  L+K+GL   DDG  +++ +   ++   PM ++  K DGGF Y T+
Sbjct: 257 GESLYNPMLPGIVEDLKKQGLAVEDDGALVVYLDEFKNKDGDPMGVIVQKKDGGFLYTTT 316

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           D+AA + R     AD  +  +D  Q  H +
Sbjct: 317 DIAAAKYRYHTLHADRALVFSDTRQSQHMQ 346



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 191/347 (55%), Gaps = 58/347 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD ++R LE++G+ V+R NHVGDWGTQFGMLIA+L+ K  +    +  +
Sbjct: 132 HLR----STIIGDAVARALEFMGNKVIRANHVGDWGTQFGMLIAYLE-KMENEHADAMEL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+ +K+ +D DE F  +A   VV LQ  D   +  W+ + D++ +  Q+ YDRL
Sbjct: 187 SDLEAFYRAAKEHYDSDEAFAVKARSYVVKLQSGDTYCRTMWKKLVDMTMQQNQRNYDRL 246

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
           NVTLTE+   GES Y   +  +V  L+K+                         G +   
Sbjct: 247 NVTLTEKDVMGESLYNPMLPGIVEDLKKQGLAVEDDGALVVYLDEFKNKDGDPMGVIVQK 306

Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K  G +Y T                      D  Q  H +      +KAG + P+   ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYHTLHADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKL++LLDE + R+   + +KN  T L+  E +E  +A
Sbjct: 366 HQNFGMMLGKDGKPFKTRSGGTVKLADLLDEAVERATLLINEKN--TALSEQEKAEVIEA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
           VA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI
Sbjct: 424 VAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSI 470



 Score =  133 bits (334), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 106/178 (59%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E +E  +AVA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTALSEQEKAEVIEAVAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     +++    VA     + +  +KE ALA  LL+  + + +V ++   H LC YL
Sbjct: 468  RSIFSKTDVDA----VALSKAKIQMTDDKERALAIKLLQFEEAVQIVAKEGTPHVLCTYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  +     +T+   RL LA+ T K +K+  D+L I+TV KM
Sbjct: 524  YELAGTFSSFYEHCPILNAE-----ETLKLSRLKLAQLTEKTLKQGLDLLGIKTVEKM 576



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 23/131 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K        +NP + AQ + +        N  L+++ +K E A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----QNPREFAQKVLN--------NVDLSEIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKL----RVLVDFSSPNIARKGGFLYPHLPS 162
           F+N+FL++ +  + + DI    +  P    K+     V++D+SSPN+A++      HL S
Sbjct: 82  FINIFLNKDWVAKNV-DI---ALAVPNFGIKVAHPQTVVIDYSSPNVAKE--MHVGHLRS 135

Query: 163 QIHDILISKAI 173
            I    +++A+
Sbjct: 136 TIIGDAVARAL 146


>gi|317491773|ref|ZP_07950208.1| arginyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920207|gb|EFV41531.1| arginyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 576

 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 161/443 (36%), Positives = 231/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  T A+  A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQALLSDKVTQALVAA----GAPANSEALVRQSAKAQFGDYQANGVMGAAKKLGIA-- 54

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +         T+  L  +   +E+A PGF+N+FL   +  +Q++  +   
Sbjct: 55  ---PRQLAEQVL--------THLELDGIASNVEIAGPGFINIFLDPAWLAKQVEMALADE 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V+P T      ++VD+S+PN+AKEMHVGHLRSTIIGD   R LE+LGH+V+R N
Sbjct: 104 RLGVAAVKPQT------IVVDYSAPNVAKEMHVGHLRSTIIGDASVRTLEFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNEHANEMDLSDLEAFYREAKKHYDEDAEFAERARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    QK Y RLNVTLT+    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCREMWRKLVDITMSQNQKNYQRLNVTLTKDDVMGESLYNSMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+  D V L H       FGM++   +D  
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVSLEH-----HMFGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTIKLSDLLDEAVER 400



 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/356 (39%), Positives = 194/356 (54%), Gaps = 58/356 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDASVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHANEMDL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+AFY+E+KK +DED  F +RA   VV LQ  D   ++ W  + D++    QK Y RL
Sbjct: 187 SDLEAFYREAKKHYDEDAEFAERARAYVVKLQGGDEYCREMWRKLVDITMSQNQKNYQRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNSMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG T+KLS+LLDE + R+   + +KN   +L+  EL++  + 
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTIKLSDLLDEAVERAGKLIAEKN--PDLSGDELAKLVEV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR++SI + AGI+ +
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVSSIFKRAGIDEQ 479



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ +L+  EL++  + V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDLSGDELAKLVEVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            +SI + AGI+ + L     S  + L  ++E ALA  L++  + +  V R+   H +C YL
Sbjct: 468  SSIFKRAGIDEQSL-----SGNIVLTEDREKALAARLIQFEETITQVAREGTPHVMCTYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY+ C  +  ++E +       RL LA  TA+ +K   D L I TV +M
Sbjct: 523  YDLAGLFSSFYEACPILTAESEEQ----RNSRLQLAALTARTLKTGLDTLGIETVERM 576



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 31/162 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  T A+  A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQALLSDKVTQALVAA----GAPANSEALVRQSAKAQFGDYQANGVMGAAKKLGIA-- 54

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +         T+  L  +   +E A PGF+N+FL   +  +Q++  +   
Sbjct: 55  ---PRQLAEQVL--------THLELDGIASNVEIAGPGFINIFLDPAWLAKQVEMALADE 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
              V  V+P T      ++VD+S+PN+A++      HL S I
Sbjct: 104 RLGVAAVKPQT------IVVDYSAPNVAKE--MHVGHLRSTI 137


>gi|86147649|ref|ZP_01065958.1| arginyl-tRNA synthetase [Vibrio sp. MED222]
 gi|218710198|ref|YP_002417819.1| arginyl-tRNA synthetase [Vibrio splendidus LGP32]
 gi|254782991|sp|B7VI24.1|SYR_VIBSL RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|85834560|gb|EAQ52709.1| arginyl-tRNA synthetase [Vibrio sp. MED222]
 gi|218323217|emb|CAV19394.1| Arginyl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 577

 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 142/386 (36%), Positives = 212/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +  V+        +L  +  K+E+A PG
Sbjct: 35  QFGDYQANGIMGVAKRLG-----TNPREFAQKVLDVL--------NLDGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  +Q    + +     +  +   ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FLNIFLDETFLAQQADAALADSRLGVSAAEAQTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+ FY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERIQAETGEVSMELSDLEQFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEEFAVKARGYVVKLQGGDAYCAEMWKKLVDVTMVQNQRNYDRLNVSLTRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+ +GL +  DG ++++ ++   +   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNHMLSNIVSDLQTQGLAKESDGAQVVFLDEYKNKDGDPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R EE  AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRFEELGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGTVRLADL 394



 Score =  213 bits (542), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 184/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+ FY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERIQAETGEVSMELSDLEQFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESKK +DEDE F  +A   VV LQ  D    + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEEFAVKARGYVVKLQGGDAYCAEMWKKLVDVTMVQNQRNYDRLNVSLTRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   +  +V  L+ +G                                     
Sbjct: 255 DVMGESMYNHMLSNIVSDLQTQGLAKESDGAQVVFLDEYKNKDGDPMGVIVQKRDGGFLY 314

Query: 705 ---NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +++  K    +LG   ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRFEELGADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+L++LLDE   R+   ++ KN   EL   E       VA   +K
Sbjct: 374 LGKDGKPFKTRAGGTVRLADLLDEAEVRATQLIESKN--PELAEDEKKTIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF ++ ML   GNTA Y+ YAYTR+ASI   AGI+
Sbjct: 432 YADLSKHRTTDYVFDWENMLAFEGNTAPYMQYAYTRVASIFAKAGIS 478



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ EL   E       VA   +KYADLS +R  DYVF ++ ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPELAEDEKKTIANTVAMAAVKYADLSKHRTTDYVFDWENMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   AGI+ + L        + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFAKAGISMDSLE-----GEIKITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    TV   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILVAEDE----TVKQSRLKLAALTAKTIKQGLSLLGIETLERM 577



 Score = 48.1 bits (113), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +  V+        +L  +  K+E A PG
Sbjct: 35  QFGDYQANGIMGVAKRLG-----TNPREFAQKVLDVL--------NLDGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL   +  +Q    + +     +  +   ++ D+S+PN+A++      HL S I
Sbjct: 82  FLNIFLDETFLAQQADAALADSRLGVSAAEAQTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|90580068|ref|ZP_01235876.1| arginyl-tRNA synthetase [Photobacterium angustum S14]
 gi|90438953|gb|EAS64136.1| arginyl-tRNA synthetase [Photobacterium angustum S14]
          Length = 576

 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 139/386 (36%), Positives = 212/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ +   +         L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVIDCL--------ELDGIAEKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL++ +  E+ ++ + +            ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLNKAWLAERGEEALKDERLAVNTETAQNIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA++Q K  +    S  I+DL+ FY+ESK  +
Sbjct: 142 VVRTLEFLGHNVIRANHLGDWGTQFGMLIANMQRKEQEGTDVSMDISDLEGFYRESKVLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F K A   VV LQ  D    + W+ +  ++ +  Q+ YDRL+V+LT+    GES 
Sbjct: 202 DEDEEFGKTARNFVVRLQSGDEYCLEKWKQLVAITLKQNQRNYDRLSVSLTDDNVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L++KGL    DG  +++ ++   +   PM ++  K DGG+ Y T+D+A 
Sbjct: 262 YNDMLPGVVADLKEKGLAVESDGAIVVYLDEYKNKDGEPMGVIIQKRDGGYLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E+  AD ++Y  D  Q  H  +  E       I R   Y+   V   +H      
Sbjct: 322 AKYRYEQLHADRVLYFIDSRQHQHLMMAWE-------IVRKAGYVPESVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 193/354 (54%), Gaps = 53/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA++Q K  +    S  I+DL+ FY
Sbjct: 135 STIIGDAVVRTLEFLGHNVIRANHLGDWGTQFGMLIANMQRKEQEGTDVSMDISDLEGFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +ESK  +DEDE F K A   VV LQ  D    + W+ +  ++ +  Q+ YDRL+V+LT+ 
Sbjct: 195 RESKVLYDEDEEFGKTARNFVVRLQSGDEYCLEKWKQLVAITLKQNQRNYDRLSVSLTDD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPGVVADLKEKGLAVESDGAIVVYLDEYKNKDGEPMGVIIQKRDGGYLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H  +  E  +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYEQLHADRVLYFIDSRQHQHLMMAWEIVRKAGYV-PESVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE + R+   +++KN   EL+  E +   Q VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAVERANKLIEEKN--PELSTEEKANIAQTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           Y+DLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + A +   D   P
Sbjct: 432 YSDLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRANVELVDLTHP 485



 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ EL+  E +   Q VA   +KY+DLS +R  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 407  EEKNPELSTEEKANIAQTVAMAAVKYSDLSKHRTTDYIFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI + A +   DL     + P+ +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASIFKRANVELVDL-----THPIVITDEKEQALLSKLLQFEEAVQSVAREGQPHLMCT 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  +     + V   RL LA  T+K +K+  D+L I T+ +M
Sbjct: 522  YLFELAGMFSSFYEACPILNAE-----EAVKQSRLKLALLTSKTIKQGLDLLGIETLERM 576



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ +   +         L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----TNPREFAQKVIDCL--------ELDGIAEKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL++ +  E+ ++ + +            ++VD+S+PN+A++      HL S I
Sbjct: 82  FINIFLNKAWLAERGEEALKDERLAVNTETAQNIVVDYSAPNVAKE--MHVGHLRSTI 137


>gi|416897803|ref|ZP_11927451.1| arginyl-tRNA synthetase [Escherichia coli STEC_7v]
 gi|417115540|ref|ZP_11966676.1| arginine--tRNA ligase [Escherichia coli 1.2741]
 gi|422799166|ref|ZP_16847665.1| arginyl-tRNA synthetase [Escherichia coli M863]
 gi|323968298|gb|EGB63705.1| arginyl-tRNA synthetase [Escherichia coli M863]
 gi|327253005|gb|EGE64659.1| arginyl-tRNA synthetase [Escherichia coli STEC_7v]
 gi|386140959|gb|EIG82111.1| arginine--tRNA ligase [Escherichia coli 1.2741]
          Length = 577

 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDATVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDATVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|399519175|ref|ZP_10759983.1| argS [Pseudomonas pseudoalcaligenes CECT 5344]
 gi|399112999|emb|CCH36541.1| argS [Pseudomonas pseudoalcaligenes CECT 5344]
          Length = 579

 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 140/345 (40%), Positives = 187/345 (54%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A++Q+   +       +ADL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYMQE---NPAAAESELADLEDFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  D +  + W    D+S    Q +YDRL V L+  
Sbjct: 197 RTAKKRFDESPEFADRARELVVQLQAGDAECLRLWHRFNDISLSHCQALYDRLGVKLSMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             RGES Y   + Q+V  L  KG L+                       + +K G     
Sbjct: 257 DVRGESAYNDDLPQVVADLAAKGLLTEDNGAQCVFMDEFKNAEGKPLPLIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+++  CA+ AG + P    M+ +GFG +
Sbjct: 317 ATTDLAATRYRANVLKADRVLYFVDQRQALHFQMVFACARLAGFV-PASMEMEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+   +KDKN   EL   EL +  + V    +K
Sbjct: 376 NGPDGRPFKTRDGGTVKLVQLLDEAEQRAYSLVKDKN--PELAEDELRQIARVVGIASVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML   GNTA YLLYAYTR+ASI R  G
Sbjct: 434 YADLSKHRTSDYSFNFDLMLSFEGNTAPYLLYAYTRVASIFRKLG 478



 Score =  229 bits (583), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 142/377 (37%), Positives = 206/377 (54%), Gaps = 56/377 (14%)

Query: 203 DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 262
           DR++    L    T A+QV             +T +K     GDF  N AM L K    K
Sbjct: 14  DRLTAEGVLPAGLTPAIQVE------------NTKDK---SHGDFASNIAMMLAKPAGMK 58

Query: 263 GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV 322
                P D+A+ + + + ++        + I K+E+A PGF+N F        Q  D + 
Sbjct: 59  -----PRDLAEKLIAALPAD--------EQITKVEIAGPGFLNFF--------QNSDALA 97

Query: 323 NGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHD 373
             ++    + KL         RV+VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG  
Sbjct: 98  QRLEAALADTKLGVRKNGPAQRVVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDT 157

Query: 374 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAY 433
           V+R NHVGDWGTQFGML+A++Q+   +       +ADL+ FY+ +KKRFDE   F  RA 
Sbjct: 158 VIRQNHVGDWGTQFGMLLAYMQE---NPAAAESELADLEDFYRTAKKRFDESPEFADRAR 214

Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPY 490
           + VV LQ  D +  + W    D+S    Q +YDRL V L+    RGES Y   + Q+V  
Sbjct: 215 ELVVQLQAGDAECLRLWHRFNDISLSHCQALYDRLGVKLSMADVRGESAYNDDLPQVVAD 274

Query: 491 LEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKAD 545
           L  KGLL  D+G + ++ ++  +     +P+ + K+ GG+ Y T+DLAA R R    KAD
Sbjct: 275 LAAKGLLTEDNGAQCVFMDEFKNAEGKPLPLIVQKAGGGYLYATTDLAATRYRANVLKAD 334

Query: 546 WIVYVTDLGQGVHFRLL 562
            ++Y  D  Q +HF+++
Sbjct: 335 RVLYFVDQRQALHFQMV 351



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 97/176 (55%), Gaps = 11/176 (6%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   +KDKN   EL   EL +  + V    +KYADLS +R  DY F+FD ML   GNT
Sbjct: 402  QRAYSLVKDKN--PELAEDELRQIARVVGIASVKYADLSKHRTSDYSFNFDLMLSFEGNT 459

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYAYTR+ASI R  G   +++        ++L  ++E ALA  L + N++L  V  
Sbjct: 460  APYLLYAYTRVASIFRKLGKGVDEI-----GGQITLVADQEQALAGKLAQFNELLGNVAD 514

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
                H LC YLYDI+  FS FY+NC  +  + E         RL LA  T + +K+
Sbjct: 515  KGTPHMLCAYLYDIAGLFSSFYENCPILTAEDE----ATRNSRLRLAALTGRTLKQ 566



 Score = 42.7 bits (99), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 45/155 (29%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           DR++    L    T A+QV             +T +K     GDF  N AM L K    K
Sbjct: 14  DRLTAEGVLPAGLTPAIQVE------------NTKDK---SHGDFASNIAMMLAKPAGMK 58

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
                P D+A+ + + + ++        + I K+E A PGF+N F        Q  D + 
Sbjct: 59  -----PRDLAEKLIAALPAD--------EQITKVEIAGPGFLNFF--------QNSDALA 97

Query: 127 NGVQPPTLNKKL---------RVLVDFSSPNIARK 152
             ++    + KL         RV+VD S+PN+A++
Sbjct: 98  QRLEAALADTKLGVRKNGPAQRVVVDLSAPNLAKE 132


>gi|422022664|ref|ZP_16369171.1| arginyl-tRNA ligase [Providencia sneebia DSM 19967]
 gi|414095834|gb|EKT57494.1| arginyl-tRNA ligase [Providencia sneebia DSM 19967]
          Length = 576

 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 146/408 (35%), Positives = 224/408 (54%), Gaps = 45/408 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+Q A    G    S A   +    +FG++Q N  M   K       
Sbjct: 1   MNIQAILSDKISAAMQAA----GAPEGSDALVRQSAKAQFGNYQANGVMGAAKKMG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP  +A+ I S        +  L  + +KIE+A PGF+N+FL   +   Q +  +++ 
Sbjct: 53  -INPRQLAEQIVS--------HLDLEGIANKIEIAGPGFINIFLDPNWITAQAEQALISH 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+ P    ++  +++D+S+PN+AK+MHVGHLRSTIIGD  +R  E+LGH V+R NHVG
Sbjct: 104 NLGLSPV---QQETIVIDYSAPNVAKQMHVGHLRSTIIGDAAARTQEFLGHKVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +   +   +ADL+ FY+E+K+ +D DE F +RA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNENAEDMALADLETFYREAKQYYDSDEAFAERARGYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   +K W  + D++ +  Q+ Y RLNVTLTE    GES Y   +  +V  L  KGL  
Sbjct: 220 GDEYCRKMWRKLVDITMQQNQETYRRLNVTLTEDDVMGESLYNDMLANIVADLRAKGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
             +G  +++ +   ++   PM ++  K DGGF Y T+D+A  + R +   AD ++Y  D 
Sbjct: 280 ESEGATVVYLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIACAKYRHDVLHADRVLYYIDS 339

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
            Q  H  L++  TI+     R   Y+   +   +H+      FGM++ 
Sbjct: 340 RQ--HQHLMQAWTIV-----RKAGYIPESMTLEHHM------FGMMLG 374



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/350 (38%), Positives = 185/350 (52%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R  E+LGH V+R NHVGDWGTQFGMLIA+L+ K  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAARTQEFLGHKVIRANHVGDWGTQFGMLIAYLE-KMQNENAEDMALADLETFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K+ +D DE F +RA   VV LQ  D   +K W  + D++ +  Q+ Y RLNVTLTE 
Sbjct: 194 REAKQYYDSDEAFAERARGYVVKLQSGDEYCRKMWRKLVDITMQQNQETYRRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L  KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLANIVADLRAKGLAVESEGATVVYLDEFKNKEGEPMGVIVQKKDGGFLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRHDVLHADRVLYYIDSRQHQHLMQAWTIVRKAGYI-PESMTLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+LS+LLDE + R+   ++ KN   ++   EL+     V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVRLSDLLDEAIERAQVLIRTKN--PDMAEDELNNVANVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + A I   D
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKKADITETD 480



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 104/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ ++   EL+     V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 406  RTKNPDMAEDELNNVANVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI + A I   DL     +  + L+ E+E ALA  L++  + +++V RD   H +C 
Sbjct: 466  RVASIFKKADITETDL-----TGSIQLQDEREIALATRLVQFEETILMVARDGTPHVMCA 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY++C  +  D + + ++    RL LA  T K +K   D L I TV +M
Sbjct: 521  YLYDLAGLFSSFYEHCPILSADDDAQRQS----RLKLALLTQKTLKAGLDTLGIETVERM 576



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 25/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+Q A    G    S A   +    +FG++Q N  M   K       
Sbjct: 1   MNIQAILSDKISAAMQAA----GAPEGSDALVRQSAKAQFGNYQANGVMGAAKKMG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP  +A+ I S        +  L  + +KIE A PGF+N+FL   +   Q +  +++ 
Sbjct: 53  -INPRQLAEQIVS--------HLDLEGIANKIEIAGPGFINIFLDPNWITAQAEQALISH 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             G+ P    ++  +++D+S+PN+A++      HL S I
Sbjct: 104 NLGLSPV---QQETIVIDYSAPNVAKQ--MHVGHLRSTI 137


>gi|409204392|ref|ZP_11232575.1| arginyl-tRNA ligase [Pseudoalteromonas flavipulchra JG1]
          Length = 580

 Score =  233 bits (593), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 205/371 (55%), Gaps = 31/371 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  L +    A+Q A    G   A   ST  +    FGD+Q N AM   K  K    
Sbjct: 1   MNIKSILIEKANAAMQAAGIPEGTNPAVTQSTRPQ----FGDYQINGAMGAAKALK---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP ++AQ I          N  +A + +K E+A PGF+N+ L   +    ++    + 
Sbjct: 53  -TNPRELAQKIID--------NLDVADLAEKTEIAGPGFINIHLKPEFLATSLEAANTDA 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GV      K  +V+VDFSSPN+AKEMHVGHLRSTIIGD + R LE+ G  V+R NH+G
Sbjct: 104 KLGVAEHA--KPHKVVVDFSSPNLAKEMHVGHLRSTIIGDAVVRALEFRGDTVIRQNHMG 161

Query: 382 DWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           DWGTQFGMLIAHL+D     +  ++  +ADL++FY+++KKRFD++  F  +A   VV LQ
Sbjct: 162 DWGTQFGMLIAHLEDLLNQGVDLENVALADLESFYRDAKKRFDDEAGFADKARDYVVKLQ 221

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLL 497
             D   KK W+M  D S +  +++Y +LNVTLT      ES Y   +  ++  L++KG+ 
Sbjct: 222 SGDAHCKKLWQMFIDTSVKHSEEVYGKLNVTLTRDNIMAESAYNDRLAGVIELLKEKGIA 281

Query: 498 ELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
             D G ++++        G   + IV KS GGF Y T+DLAA   R  E   D I+   D
Sbjct: 282 VEDQGAQVVFLDELANKDGEPSVFIVQKSGGGFLYSTTDLAACDYRSNELDVDRILIFVD 341

Query: 553 LGQGVHFRLLE 563
             QG+HF  +E
Sbjct: 342 ARQGLHFNQVE 352



 Score =  227 bits (579), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 139/356 (39%), Positives = 197/356 (55%), Gaps = 58/356 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD + R LE+ G  V+R NH+GDWGTQFGMLIAHL+D     +  ++  
Sbjct: 133 HLR----STIIGDAVVRALEFRGDTVIRQNHMGDWGTQFGMLIAHLEDLLNQGVDLENVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL++FY+++KKRFD++  F  +A   VV LQ  D   KK W+M  D S +  +++Y +
Sbjct: 189 LADLESFYRDAKKRFDDEAGFADKARDYVVKLQSGDAHCKKLWQMFIDTSVKHSEEVYGK 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKG-----------------------NLSLTK 710
           LNVTLT      ES Y   +  ++  L++KG                       ++ + +
Sbjct: 249 LNVTLTRDNIMAESAYNDRLAGVIELLKEKGIAVEDQGAQVVFLDELANKDGEPSVFIVQ 308

Query: 711 KLG------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRM 746
           K G                        I+   D  QG+HF  +E  A+KAG+L  +KT  
Sbjct: 309 KSGGGFLYSTTDLAACDYRSNELDVDRILIFVDARQGLHFNQVEITARKAGLLK-DKTSY 367

Query: 747 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ 806
           +   FG ++G D K FKTR+G TVKLS+LLDE + R+ +KL D  R ++L+     E  +
Sbjct: 368 EPSLFGTMMGNDGKPFKTRTGGTVKLSDLLDEAVSRATEKLAD--RASDLSDEARQEIAR 425

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
            V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTR+ SI R A ++S
Sbjct: 426 KVGIGAVKYADLSKHRTSDYIFNWDTMLSFEGATAPYLQYAYTRVRSIFRKANMDS 481



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+ +KL D  R ++L+     E  + V  G +KYADLS +R  DY+F++D ML   G
Sbjct: 400  AVSRATEKLAD--RASDLSDEARQEIARKVGIGAVKYADLSKHRTSDYIFNWDTMLSFEG 457

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
             TA YL YAYTR+ SI R A ++S     A+ +  + ++  +E ALA  LL++ +VL L+
Sbjct: 458  ATAPYLQYAYTRVRSIFRKANMDS-----ASLTGRIQIQAPQEKALALKLLQLEEVLDLM 512

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
              +   H LC YLY++++ +  FY+ C  ++ D    ++     RLLL    A  +K   
Sbjct: 513  ISEATPHVLCSYLYELASLYMTFYEACPILKDDVAADVR---ESRLLLCNLVANSLKTGL 569

Query: 1109 DILNIRTVHKM 1119
            D+L I  + +M
Sbjct: 570  DLLGIEVMEQM 580



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 24/159 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  L +    A+Q A    G   A   ST  +    FGD+Q N AM   K  K    
Sbjct: 1   MNIKSILIEKANAAMQAAGIPEGTNPAVTQSTRPQ----FGDYQINGAMGAAKALK---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP ++AQ I          N  +A + +K E A PGF+N+ L   +    ++    + 
Sbjct: 53  -TNPRELAQKIID--------NLDVADLAEKTEIAGPGFINIHLKPEFLATSLEAANTDA 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
             GV      K  +V+VDFSSPN+A++      HL S I
Sbjct: 104 KLGVAEHA--KPHKVVVDFSSPNLAKE--MHVGHLRSTI 138


>gi|294139047|ref|YP_003555025.1| arginyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293325516|dbj|BAJ00247.1| arginyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 581

 Score =  233 bits (593), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 131/325 (40%), Positives = 193/325 (59%), Gaps = 22/325 (6%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K       +KNP +IAQ    ++   L  +  +AKV    E+A PGF+
Sbjct: 41  GDFATNLAMMLTKT-----ARKNPREIAQ----LIIDSLPQDSQVAKV----EIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F+       Q+   + +     +L ++  ++VD+SSPN+AKEMHVGHLRSTIIGD++ 
Sbjct: 88  NFFIDENALANQLMAALKDDHLGISLPEQQTIVVDYSSPNLAKEMHVGHLRSTIIGDSVV 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKKRFD 423
           R LE+ GH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ FY+ +K RFD
Sbjct: 148 RALEFQGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEQAQMELSDLETFYRAAKVRFD 207

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFY 480
           E E F  RA + VV+LQ  D    K W    D+S      +Y RL V+LT    RGES Y
Sbjct: 208 ESEEFAVRARKLVVSLQSGDEYCNKLWREFNDISLNHCHDVYARLGVSLTREDVRGESAY 267

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAI 535
              + ++V  L+ +GLL   +G K+++      ++   +P+ I K+DGG+ Y TSD+AA+
Sbjct: 268 NADLVEVVKELDTQGLLSESNGAKVVFQDEFKNKEGDPLPVIIQKADGGYLYATSDMAAM 327

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFR 560
             R +   AD ++Y  DL Q +HF+
Sbjct: 328 SYRSKVLNADRVLYFVDLRQALHFQ 352



 Score =  213 bits (542), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 184/345 (53%), Gaps = 54/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
           STIIGD++ R LE+ GH V+R NHVGDWGTQFGML+A++++ +  +       ++DL+ F
Sbjct: 139 STIIGDSVVRALEFQGHKVIRQNHVGDWGTQFGMLLAYMEELRAKNGEQAQMELSDLETF 198

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+ +K RFDE E F  RA + VV+LQ  D    K W    D+S      +Y RL V+LT 
Sbjct: 199 YRAAKVRFDESEEFAVRARKLVVSLQSGDEYCNKLWREFNDISLNHCHDVYARLGVSLTR 258

Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV------------------------- 715
              RGES Y   + ++V  L+ +G LS +    +V                         
Sbjct: 259 EDVRGESAYNADLVEVVKELDTQGLLSESNGAKVVFQDEFKNKEGDPLPVIIQKADGGYL 318

Query: 716 ----------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                                 Y  DL Q +HF+ + + A+KA  + P +  ++ +GFG 
Sbjct: 319 YATSDMAAMSYRSKVLNADRVLYFVDLRQALHFQQVFKLARKANFVRP-ELSLEHMGFGT 377

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           + G D + FKTRSG  VKL +LL E   R+L+ ++ KN   ++   EL +  + V    +
Sbjct: 378 MNGADGRPFKTRSGGVVKLVDLLAEADIRALELVRSKN--PDMDEAELEKIAKVVGISSV 435

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           KYADLS NR  DY+FSF++ML   GNTA YLLYAYTR+  I + A
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVIGIFKRA 480



 Score =  126 bits (316), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 111/188 (59%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L+ ++ KN   ++   EL +  + V    +KYADLS NR  DY+FSF++ML   GNTA
Sbjct: 406  RALELVRSKN--PDMDEAELEKIAKVVGISSVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+  I + A    ED+ ++     + LEH+KE  L   L +  +VL  +   
Sbjct: 464  PYLLYAYTRVIGIFKRA----EDIDLS--QAKILLEHDKEKNLGNKLAQFGEVLSRMVSK 517

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YL++++ AFS FY+ C  +  + E + K+    RLL+A+ TAK +K+  D+L
Sbjct: 518  GQPHAMCAYLFELAGAFSSFYEACPVLAAETEEQKKS----RLLIAKLTAKTLKQGLDLL 573

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 574  GIETLDRM 581



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 13/104 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K       +KNP +IAQ    ++   L  +  +AKV    E A PGF+
Sbjct: 41  GDFATNLAMMLTKT-----ARKNPREIAQ----LIIDSLPQDSQVAKV----EIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           N F+       Q+   + +     +L ++  ++VD+SSPN+A++
Sbjct: 88  NFFIDENALANQLMAALKDDHLGISLPEQQTIVVDYSSPNLAKE 131


>gi|422781221|ref|ZP_16834006.1| arginyl-tRNA synthetase [Escherichia coli TW10509]
 gi|323977939|gb|EGB73025.1| arginyl-tRNA synthetase [Escherichia coli TW10509]
          Length = 577

 Score =  232 bits (592), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|157145345|ref|YP_001452664.1| arginyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|166232776|sp|A8AFG5.1|SYR_CITK8 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|157082550|gb|ABV12228.1| hypothetical protein CKO_01085 [Citrobacter koseri ATCC BAA-895]
          Length = 577

 Score =  232 bits (592), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 155/430 (36%), Positives = 224/430 (52%), Gaps = 51/430 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+ VA    G          +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQAMIVA----GAPANCEPQVRQSAKVQFGDYQANGMMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ +         T+  L  +  K+E+A PGF+N+FL   +  E ++  + + 
Sbjct: 53  -MAPRQLAEQVL--------THLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALASE 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GV  P    K  V++D+S+PN+AKEMHVGHLRSTIIGD   R LE+LGH V+R NHVG
Sbjct: 104 RLGVAKPA---KQTVVIDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHHVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +DEDE F +RA   VV LQ 
Sbjct: 161 DWGTQFGMLIAWLEKQQQENAGEM-ALADLEGFYRDAKKHYDEDEAFAERARNYVVKLQG 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            DP +   W  + D++    Q  Y+RLNVTLT     GES Y   +  +V  L+ +GL  
Sbjct: 220 GDPYFLDMWRKLVDITMTQNQITYNRLNVTLTRDDVMGESLYNPMLPGIVADLKAQGLAV 279

Query: 499 LDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
             +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD ++Y 
Sbjct: 280 ESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLHADRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q  H  L++  TI+     R   Y+  D V L H       FGM++      F   
Sbjct: 337 IDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH-----HMFGMMLGKDGKPFKTR 383

Query: 611 LTKSPPIADL 620
              +  +ADL
Sbjct: 384 AGGTVKLADL 393



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 185/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  DP +   W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARNYVVKLQGGDPYFLDMWRKLVDITMTQNQITYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ +G                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAQGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEID 477



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDESAL----SSAPVVIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYDI+  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDIAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+ VA    G          +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQAMIVA----GAPANCEPQVRQSAKVQFGDYQANGMMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ +         T+  L  +  K+E A PGF+N+FL   +  E ++  + + 
Sbjct: 53  -MAPRQLAEQVL--------THLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALASE 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             GV  P    K  V++D+S+PN+A++
Sbjct: 104 RLGVAKPA---KQTVVIDYSAPNVAKE 127


>gi|345299736|ref|YP_004829094.1| arginyl-tRNA synthetase [Enterobacter asburiae LF7a]
 gi|345093673|gb|AEN65309.1| Arginyl-tRNA synthetase [Enterobacter asburiae LF7a]
          Length = 577

 Score =  232 bits (592), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 146/389 (37%), Positives = 209/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  LA +  K E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MPPRQLAEQVL--------THLDLAGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +    +   + +     T  K   +++D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLASNVDAALKSDRLGVTQPKAQTIVIDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+KK +
Sbjct: 142 SVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE+F +RA   VV LQ  D  + + W  + D++    Q  Y+RLNVTLT     GES 
Sbjct: 201 DEDEVFAERARSYVVKLQGGDAYFLEMWRKLVDITMSQNQLTYNRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/347 (39%), Positives = 188/347 (54%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDASVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE+F +RA   VV LQ  D  + + W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKHYDEDEVFAERARSYVVKLQGGDAYFLEMWRKLVDITMSQNQLTYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKANID 477



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L  AA    V +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKANIDESVLANAA----VQISEDREAQLAARLLQFEETLSVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             RD   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  ARDGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----AVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  LA +  K E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MPPRQLAEQVL--------THLDLAGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +    +   + +     T  K   +++D+S+PN+A++
Sbjct: 82  FINIFLDPAFLASNVDAALKSDRLGVTQPKAQTIVIDYSAPNVAKE 127


>gi|258626716|ref|ZP_05721540.1| Arginyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|258581012|gb|EEW05937.1| Arginyl-tRNA synthetase [Vibrio mimicus VM603]
          Length = 597

 Score =  232 bits (592), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 211/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 55  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 101

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 102 FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 161

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 162 VVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQKESGQISMELSDLEAFYRESKKLY 221

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 222 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 281

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+ KGL   DDG ++++    +++   PM ++  K DGGF Y T+D+A 
Sbjct: 282 YNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFQNKDGEPMGVIVQKRDGGFLYTTTDIAC 341

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 342 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPEQVSLEHHA----- 389

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 390 -FGMMLGKDGRPFKTRAGGTVRLADL 414



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 189/347 (54%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY
Sbjct: 155 STIIGDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQKESGQISMELSDLEAFY 214

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 215 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 274

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + K+ G    
Sbjct: 275 NVMGESMYNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFQNKDGEPMGVIVQKRDGGFLY 334

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 335 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PEQVSLEHHAFGMM 393

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   +K KN   +L+  E ++    VA   +K
Sbjct: 394 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIKSKN--PDLSADEKAKIANTVAMAAVK 451

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 452 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 498



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K+++ +L+  E ++    VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 427  KSKNPDLSADEKAKIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 486

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 487  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 541

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E     V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 542  YLFELAGIFSSFYEACPILVAEQE----NVKQSRLKLAALTAKTIKQGLALLGIETLERM 597



 Score = 43.9 bits (102), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 55  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 101

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 102 FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKE 147


>gi|26991765|ref|NP_747190.1| arginyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|38258317|sp|Q88CU1.1|SYR_PSEPK RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|24986874|gb|AAN70654.1|AE016709_6 arginyl-tRNA synthetase [Pseudomonas putida KT2440]
          Length = 578

 Score =  232 bits (592), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 149/370 (40%), Positives = 209/370 (56%), Gaps = 51/370 (13%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K     G K  P D+A+ + + +       P+ A  I K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKLINAL-------PASAD-ISKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLR 355
           N F        Q  D + N +     +  L         +V++D S+PN+AKEMHVGHLR
Sbjct: 88  NFF--------QNTDALANRLDAALADAHLGARKAGPAQKVVIDMSAPNLAKEMHVGHLR 139

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415
           STIIGD+++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDNVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           + +KKRFDE E F  RA   VV LQ  DP+    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPECLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTY 527
              GES Y   +  +V  L+ KGLL  D G + ++ E     D   +P+ + K+DGG+ Y
Sbjct: 256 DVMGESAYNDDLANVVADLKAKGLLVEDQGAQCVFLEEFKNSDGDPLPVIVQKADGGYLY 315

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            T+DLAA+R R    KAD  +Y  D  Q +HF  + E       ++R   ++GH  +++ 
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFE-------VARRAGFVGHP-MQME 367

Query: 588 HVGDWGTQFG 597
           H+G +GT  G
Sbjct: 368 HMG-FGTMNG 376



 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 182/345 (52%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDNVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  DP+    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPECLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKK----------------------------------GNLS 707
              GES Y   +  +V  L+ K                                  G L 
Sbjct: 256 DVMGESAYNDDLANVVADLKAKGLLVEDQGAQCVFLEEFKNSDGDPLPVIVQKADGGYLY 315

Query: 708 LTKKLGIV-------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T  L  V             Y  D  Q +HF  + E A++AG +  +  +M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFEVARRAGFVG-HPMQMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN    L   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAKERAYALVKEKN--PSLADDELRHIGEVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 13/169 (7%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++  L   EL    + V  G +KYADLS +R  DY F+F+ ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPSLADDELRHIGEVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIART--AGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHL 1057
            R+A + R    G +  D ++  Q+      HE++  LA  L +  ++L  V      H L
Sbjct: 468  RVAGVFRKLGKGFDEVDGKIVLQAA-----HEQD--LAARLAQFGEILNNVAEKGTPHVL 520

Query: 1058 CEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            C YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+
Sbjct: 521  CSYLYDLAGLFSSFYENCPILAAETPSQQQS----RLRLAALTGRTLKQ 565


>gi|444334097|ref|ZP_21149724.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype a str. A160]
 gi|443550863|gb|ELT58981.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype a str. A160]
          Length = 577

 Score =  232 bits (592), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 143/386 (37%), Positives = 211/386 (54%), Gaps = 35/386 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E+A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E I + + +         K  V+VD+SSPN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +KK +
Sbjct: 142 VVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFYRAAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTL E+   GES 
Sbjct: 201 DEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLAEKDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L+K+GL   DDG  +++      +D G + + + K DGGF Y T+D+AA
Sbjct: 261 YNPMLPGIVEDLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E  KA   +  +D  Q  H   ++++ +    I+R   Y+  D  +L H      
Sbjct: 321 AKYRYETLKASRALVFSDTRQSQH---MQQAWL----ITRKAGYV-PDSFQLEH-----K 367

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 368 NFGMMLGKDGKPFKTRSGDTVKLADL 393



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 196/365 (53%), Gaps = 54/365 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTL E+
Sbjct: 194 RAAKKHYDEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLAEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPGIVEDLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  +++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKASRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLEHKNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSGDTVKL++LLDE + R+   +  K+  T L+  E ++  +AV  G +K
Sbjct: 373 LGKDGKPFKTRSGDTVKLADLLDEAIERAGVLISQKS--TALSEQEKADVIEAVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + IN  +  +   + + 
Sbjct: 431 YADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSQINPAEVEQASLTLTN 490

Query: 875 VEDRC 879
            ++R 
Sbjct: 491 EKERA 495



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSEQEKADVIEAVGIGSVKYADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + IN  ++  A+    ++L +EKE ALA  LL+  + + LV +D   H LC YL
Sbjct: 468  RSIFNRSQINPAEVEQAS----LTLTNEKERALAIKLLQFEEAIQLVAKDGTPHILCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + +     V   RL LA  T + +K+  D+L I+TV +M
Sbjct: 524  YELAGVFSSFYEHCPILNNEDQ----QVKLSRLKLALLTERTLKQGLDLLGIKTVERM 577



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL   +  E + + + +         K  V+VD+SSPN+A++      HL S I
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKE--MHVGHLRSTI 137


>gi|417168000|ref|ZP_12000622.1| arginine--tRNA ligase [Escherichia coli 99.0741]
 gi|386171026|gb|EIH43074.1| arginine--tRNA ligase [Escherichia coli 99.0741]
          Length = 577

 Score =  232 bits (592), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYESLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYESLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPANELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPANELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|419345507|ref|ZP_13886885.1| arginyl-tRNA synthetase [Escherichia coli DEC13A]
 gi|419349928|ref|ZP_13891272.1| arginyl-tRNA synthetase [Escherichia coli DEC13B]
 gi|378187425|gb|EHX48037.1| arginyl-tRNA synthetase [Escherichia coli DEC13A]
 gi|378202289|gb|EHX62728.1| arginyl-tRNA synthetase [Escherichia coli DEC13B]
          Length = 576

 Score =  232 bits (592), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 210/392 (53%), Gaps = 48/392 (12%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQEN--AGEMELADLEGFYRDAK 196

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 197 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 256

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 257 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 313

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 314 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 367 M------FGMMLGKDGKPFKTRAGGTVKLADL 392



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 185/349 (53%), Gaps = 55/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQEN--AGEMELADLEGFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 193 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 252

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 253 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 312

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 313 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 372 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 430 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 478



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 396  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 453

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 454  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLSVV 509

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 510  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 565

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 566  DTLGIETVERM 576



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|419289783|ref|ZP_13831877.1| arginyl-tRNA synthetase [Escherichia coli DEC11A]
 gi|378130925|gb|EHW92286.1| arginyl-tRNA synthetase [Escherichia coli DEC11A]
          Length = 577

 Score =  232 bits (592), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYESLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYESLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (342), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   R+ LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRMKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|339489813|ref|YP_004704341.1| arginyl-tRNA synthetase [Pseudomonas putida S16]
 gi|431804912|ref|YP_007231815.1| arginyl-tRNA ligase [Pseudomonas putida HB3267]
 gi|338840656|gb|AEJ15461.1| arginyl-tRNA synthetase [Pseudomonas putida S16]
 gi|430795677|gb|AGA75872.1| arginyl-tRNA ligase [Pseudomonas putida HB3267]
          Length = 578

 Score =  232 bits (592), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 208/370 (56%), Gaps = 51/370 (13%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K     G K  P D+A+ + + +       P+ A  I K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKLINAL-------PASAD-ISKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLR 355
           N F        Q  D + N +     +  L         +V++D S+PN+AKEMHVGHLR
Sbjct: 88  NFF--------QNTDALANRLDAALADAHLGARKAGPAQKVVIDMSAPNLAKEMHVGHLR 139

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415
           STIIGD+++R+LE+LG DV+R NHVGDWGTQFGML+A+L++  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDDVIRQNHVGDWGTQFGMLLAYLEEN-P---ITSDELSDLENFY 195

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           + +KKRFDE E F  RA   VV LQ  DPD    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPDCMALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
              GES Y   +  +V  L+ KGLL  D G + ++       +   +P+ + K+DGG+ Y
Sbjct: 256 DVMGESAYNDDLANVVADLKAKGLLVEDQGAQCVFLDEFKNSEGEPLPVIVQKADGGYLY 315

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            T+DLAA+R R    KAD  +Y  D  Q +HF  + E       ++R   ++GH  +++ 
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFE-------VARRAGFVGHP-MQME 367

Query: 588 HVGDWGTQFG 597
           H+G +GT  G
Sbjct: 368 HMG-FGTMNG 376



 Score =  219 bits (559), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 137/345 (39%), Positives = 183/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++R+LE+LG DV+R NHVGDWGTQFGML+A+L++  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDDVIRQNHVGDWGTQFGMLLAYLEEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  DPD    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPDCMALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLANVVADLKAKGLLVEDQGAQCVFLDEFKNSEGEPLPVIVQKADGGYLY 315

Query: 707 ------------SLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                       ++ K    +Y  D  Q +HF  + E A++AG +  +  +M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFEVARRAGFVG-HPMQMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN    L   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAKERAYALVKEKN--PSLADEELRHIGEVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 91/169 (53%), Gaps = 13/169 (7%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++  L   EL    + V  G +KYADLS +R  DY F+F+ ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPSLADEELRHIGEVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIART--AGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHL 1057
            R+A + R    G +  D  +  Q+      HE++  LA  L +  ++L  V      H L
Sbjct: 468  RVAGVFRKLGKGFDEVDGNIVLQAA-----HEQD--LAARLAQFGEILNNVADKGTPHVL 520

Query: 1058 CEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            C YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+
Sbjct: 521  CSYLYDLAGLFSSFYENCPILAAETPQQQQS----RLRLAALTGRTLKQ 565


>gi|300819860|ref|ZP_07100045.1| arginyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|415874783|ref|ZP_11541716.1| arginine--tRNA ligase [Escherichia coli MS 79-10]
 gi|300527557|gb|EFK48619.1| arginyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|342929985|gb|EGU98707.1| arginine--tRNA ligase [Escherichia coli MS 79-10]
          Length = 577

 Score =  232 bits (592), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNSIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNSIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|193065443|ref|ZP_03046512.1| arginyl-tRNA synthetase [Escherichia coli E22]
 gi|260844286|ref|YP_003222064.1| arginyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260855816|ref|YP_003229707.1| arginyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260868474|ref|YP_003234876.1| arginyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|415792275|ref|ZP_11495800.1| arginyl-tRNA synthetase [Escherichia coli EPECa14]
 gi|415805125|ref|ZP_11501334.1| arginyl-tRNA synthetase [Escherichia coli E128010]
 gi|415809874|ref|ZP_11502497.1| arginyl-tRNA synthetase [Escherichia coli LT-68]
 gi|415818049|ref|ZP_11507965.1| arginyl-tRNA synthetase [Escherichia coli OK1180]
 gi|417172181|ref|ZP_12002214.1| arginine--tRNA ligase [Escherichia coli 3.2608]
 gi|417187716|ref|ZP_12012382.1| arginine--tRNA ligase [Escherichia coli 93.0624]
 gi|417189752|ref|ZP_12012890.1| arginine--tRNA ligase [Escherichia coli 4.0522]
 gi|417206947|ref|ZP_12019582.1| arginine--tRNA ligase [Escherichia coli JB1-95]
 gi|417249079|ref|ZP_12040864.1| arginine--tRNA ligase [Escherichia coli 4.0967]
 gi|417298139|ref|ZP_12085381.1| arginine--tRNA ligase [Escherichia coli 900105 (10e)]
 gi|417592030|ref|ZP_12242729.1| arginyl-tRNA synthetase [Escherichia coli 2534-86]
 gi|417623721|ref|ZP_12274024.1| arginyl-tRNA synthetase [Escherichia coli STEC_H.1.8]
 gi|419197278|ref|ZP_13740671.1| arginyl-tRNA synthetase [Escherichia coli DEC8A]
 gi|419203712|ref|ZP_13746907.1| arginyl-tRNA synthetase [Escherichia coli DEC8B]
 gi|419209795|ref|ZP_13752882.1| arginyl-tRNA synthetase [Escherichia coli DEC8C]
 gi|419215866|ref|ZP_13758868.1| arginyl-tRNA synthetase [Escherichia coli DEC8D]
 gi|419221672|ref|ZP_13764602.1| arginyl-tRNA synthetase [Escherichia coli DEC8E]
 gi|419226974|ref|ZP_13769839.1| arginyl-tRNA synthetase [Escherichia coli DEC9A]
 gi|419249354|ref|ZP_13791943.1| arginyl-tRNA synthetase [Escherichia coli DEC9E]
 gi|419255150|ref|ZP_13797672.1| arginyl-tRNA synthetase [Escherichia coli DEC10A]
 gi|419261367|ref|ZP_13803792.1| arginyl-tRNA synthetase [Escherichia coli DEC10B]
 gi|419267276|ref|ZP_13809633.1| arginyl-tRNA synthetase [Escherichia coli DEC10C]
 gi|419284318|ref|ZP_13826500.1| arginyl-tRNA synthetase [Escherichia coli DEC10F]
 gi|419295172|ref|ZP_13837218.1| arginyl-tRNA synthetase [Escherichia coli DEC11B]
 gi|419300479|ref|ZP_13842479.1| arginyl-tRNA synthetase [Escherichia coli DEC11C]
 gi|419306522|ref|ZP_13848426.1| arginyl-tRNA synthetase [Escherichia coli DEC11D]
 gi|419311548|ref|ZP_13853415.1| arginyl-tRNA synthetase [Escherichia coli DEC11E]
 gi|419869514|ref|ZP_14391718.1| arginyl-tRNA synthetase [Escherichia coli O103:H2 str. CVM9450]
 gi|419878131|ref|ZP_14399608.1| arginyl-tRNA synthetase [Escherichia coli O111:H11 str. CVM9534]
 gi|419879999|ref|ZP_14401415.1| arginyl-tRNA synthetase [Escherichia coli O111:H11 str. CVM9545]
 gi|419890981|ref|ZP_14411155.1| arginyl-tRNA synthetase [Escherichia coli O111:H8 str. CVM9570]
 gi|419897226|ref|ZP_14416819.1| arginyl-tRNA synthetase [Escherichia coli O111:H8 str. CVM9574]
 gi|419901599|ref|ZP_14420925.1| arginyl-tRNA synthetase [Escherichia coli O26:H11 str. CVM9942]
 gi|419905441|ref|ZP_14424408.1| arginyl-tRNA synthetase [Escherichia coli O26:H11 str. CVM10026]
 gi|420091488|ref|ZP_14603235.1| arginyl-tRNA synthetase [Escherichia coli O111:H8 str. CVM9602]
 gi|420095239|ref|ZP_14606763.1| arginyl-tRNA synthetase [Escherichia coli O111:H8 str. CVM9634]
 gi|420104114|ref|ZP_14614872.1| arginyl-tRNA synthetase [Escherichia coli O111:H11 str. CVM9455]
 gi|420107908|ref|ZP_14618218.1| arginyl-tRNA synthetase [Escherichia coli O111:H11 str. CVM9553]
 gi|420114042|ref|ZP_14623730.1| arginyl-tRNA synthetase [Escherichia coli O26:H11 str. CVM10021]
 gi|420123704|ref|ZP_14632585.1| arginyl-tRNA synthetase [Escherichia coli O26:H11 str. CVM10030]
 gi|420128371|ref|ZP_14636929.1| arginyl-tRNA ligase [Escherichia coli O26:H11 str. CVM10224]
 gi|420133852|ref|ZP_14642022.1| arginyl-tRNA synthetase [Escherichia coli O26:H11 str. CVM9952]
 gi|420391560|ref|ZP_14890817.1| arginyl-tRNA synthetase [Escherichia coli EPEC C342-62]
 gi|424753397|ref|ZP_18181354.1| arginyl-tRNA ligase [Escherichia coli O26:H11 str. CFSAN001629]
 gi|424760779|ref|ZP_18188384.1| arginyl-tRNA ligase [Escherichia coli O111:H11 str. CFSAN001630]
 gi|424774496|ref|ZP_18201510.1| arginyl-tRNA ligase [Escherichia coli O111:H8 str. CFSAN001632]
 gi|425379654|ref|ZP_18763764.1| arginine--tRNA ligase [Escherichia coli EC1865]
 gi|192926848|gb|EDV81473.1| arginyl-tRNA synthetase [Escherichia coli E22]
 gi|257754465|dbj|BAI25967.1| arginyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257759433|dbj|BAI30930.1| arginyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257764830|dbj|BAI36325.1| arginyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|323152635|gb|EFZ38911.1| arginyl-tRNA synthetase [Escherichia coli EPECa14]
 gi|323158639|gb|EFZ44653.1| arginyl-tRNA synthetase [Escherichia coli E128010]
 gi|323174607|gb|EFZ60228.1| arginyl-tRNA synthetase [Escherichia coli LT-68]
 gi|323180673|gb|EFZ66218.1| arginyl-tRNA synthetase [Escherichia coli OK1180]
 gi|345340690|gb|EGW73108.1| arginyl-tRNA synthetase [Escherichia coli 2534-86]
 gi|345378967|gb|EGX10885.1| arginyl-tRNA synthetase [Escherichia coli STEC_H.1.8]
 gi|378048590|gb|EHW10944.1| arginyl-tRNA synthetase [Escherichia coli DEC8A]
 gi|378050423|gb|EHW12751.1| arginyl-tRNA synthetase [Escherichia coli DEC8B]
 gi|378055026|gb|EHW17294.1| arginyl-tRNA synthetase [Escherichia coli DEC8C]
 gi|378062350|gb|EHW24527.1| arginyl-tRNA synthetase [Escherichia coli DEC8D]
 gi|378067159|gb|EHW29285.1| arginyl-tRNA synthetase [Escherichia coli DEC8E]
 gi|378076065|gb|EHW38078.1| arginyl-tRNA synthetase [Escherichia coli DEC9A]
 gi|378096727|gb|EHW58497.1| arginyl-tRNA synthetase [Escherichia coli DEC9E]
 gi|378101314|gb|EHW63001.1| arginyl-tRNA synthetase [Escherichia coli DEC10A]
 gi|378107483|gb|EHW69103.1| arginyl-tRNA synthetase [Escherichia coli DEC10B]
 gi|378112048|gb|EHW73628.1| arginyl-tRNA synthetase [Escherichia coli DEC10C]
 gi|378133783|gb|EHW95118.1| arginyl-tRNA synthetase [Escherichia coli DEC10F]
 gi|378142259|gb|EHX03461.1| arginyl-tRNA synthetase [Escherichia coli DEC11B]
 gi|378149957|gb|EHX11077.1| arginyl-tRNA synthetase [Escherichia coli DEC11D]
 gi|378151368|gb|EHX12480.1| arginyl-tRNA synthetase [Escherichia coli DEC11C]
 gi|378158649|gb|EHX19667.1| arginyl-tRNA synthetase [Escherichia coli DEC11E]
 gi|386179879|gb|EIH57353.1| arginine--tRNA ligase [Escherichia coli 3.2608]
 gi|386181373|gb|EIH64136.1| arginine--tRNA ligase [Escherichia coli 93.0624]
 gi|386192305|gb|EIH81034.1| arginine--tRNA ligase [Escherichia coli 4.0522]
 gi|386197403|gb|EIH91607.1| arginine--tRNA ligase [Escherichia coli JB1-95]
 gi|386221062|gb|EII37525.1| arginine--tRNA ligase [Escherichia coli 4.0967]
 gi|386258407|gb|EIJ13886.1| arginine--tRNA ligase [Escherichia coli 900105 (10e)]
 gi|388335888|gb|EIL02437.1| arginyl-tRNA synthetase [Escherichia coli O111:H11 str. CVM9534]
 gi|388342719|gb|EIL08753.1| arginyl-tRNA synthetase [Escherichia coli O103:H2 str. CVM9450]
 gi|388351893|gb|EIL17069.1| arginyl-tRNA synthetase [Escherichia coli O111:H8 str. CVM9570]
 gi|388355804|gb|EIL20626.1| arginyl-tRNA synthetase [Escherichia coli O111:H8 str. CVM9574]
 gi|388370153|gb|EIL33696.1| arginyl-tRNA synthetase [Escherichia coli O111:H11 str. CVM9545]
 gi|388375757|gb|EIL38758.1| arginyl-tRNA synthetase [Escherichia coli O26:H11 str. CVM9942]
 gi|388381308|gb|EIL43876.1| arginyl-tRNA synthetase [Escherichia coli O26:H11 str. CVM10026]
 gi|391313325|gb|EIQ70918.1| arginyl-tRNA synthetase [Escherichia coli EPEC C342-62]
 gi|394383073|gb|EJE60681.1| arginyl-tRNA synthetase [Escherichia coli O111:H8 str. CVM9602]
 gi|394385798|gb|EJE63317.1| arginyl-tRNA ligase [Escherichia coli O26:H11 str. CVM10224]
 gi|394393838|gb|EJE70490.1| arginyl-tRNA synthetase [Escherichia coli O111:H8 str. CVM9634]
 gi|394405305|gb|EJE80522.1| arginyl-tRNA synthetase [Escherichia coli O111:H11 str. CVM9455]
 gi|394410242|gb|EJE84652.1| arginyl-tRNA synthetase [Escherichia coli O26:H11 str. CVM10021]
 gi|394411503|gb|EJE85731.1| arginyl-tRNA synthetase [Escherichia coli O111:H11 str. CVM9553]
 gi|394416359|gb|EJE90155.1| arginyl-tRNA synthetase [Escherichia coli O26:H11 str. CVM10030]
 gi|394424015|gb|EJE97220.1| arginyl-tRNA synthetase [Escherichia coli O26:H11 str. CVM9952]
 gi|408298216|gb|EKJ16167.1| arginine--tRNA ligase [Escherichia coli EC1865]
 gi|421933874|gb|EKT91653.1| arginyl-tRNA ligase [Escherichia coli O111:H8 str. CFSAN001632]
 gi|421935619|gb|EKT93307.1| arginyl-tRNA ligase [Escherichia coli O26:H11 str. CFSAN001629]
 gi|421945450|gb|EKU02666.1| arginyl-tRNA ligase [Escherichia coli O111:H11 str. CFSAN001630]
          Length = 577

 Score =  232 bits (592), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYESLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYESLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|392547085|ref|ZP_10294222.1| arginyl-tRNA ligase [Pseudoalteromonas rubra ATCC 29570]
          Length = 580

 Score =  232 bits (591), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 141/356 (39%), Positives = 194/356 (54%), Gaps = 58/356 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD + R LE+ G  V R NHVGDWGTQFGMLIAHL+D     +  ++  
Sbjct: 133 HLR----STIIGDAVVRALEFRGDKVTRQNHVGDWGTQFGMLIAHLEDMLAQGIDLENVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W++  D S +  +++Y +
Sbjct: 189 LADLETFYRDAKKRFDDEEGFSDKARDYVVKLQGGDAHCQKLWQLFIDTSVKHSEEVYKK 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKK------------------------------ 703
           LNVTLT      ES Y   +  ++  L+ K                              
Sbjct: 249 LNVTLTRDDIMAESAYNDRLAGIITLLKDKNIAVEDQGAQVVFLDELANKDGEPSVFIVQ 308

Query: 704 ----GNLSLTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRM 746
               G L  T  L              I+   D  Q +HF  +E  A+KAG+L  ++T  
Sbjct: 309 KSGGGFLYATTDLAACDYRSNELGAERILIFVDARQSLHFNQVELTARKAGLLR-DETSY 367

Query: 747 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ 806
           +F  FG ++G D K FKTR+G TVKL+ELLDE + R+ +KL D  R +EL+    +E  +
Sbjct: 368 EFCPFGTMMGSDGKPFKTRTGGTVKLAELLDEAVSRASEKLAD--RASELSAEARAEIAR 425

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
            V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTR+ SI R AG++S
Sbjct: 426 KVGIGAVKYADLSKHRTSDYIFNWDTMLSFEGATAPYLQYAYTRVRSIFRKAGVDS 481



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 199/377 (52%), Gaps = 43/377 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  L +    A+  A    G   A   ST  +    FGD+Q N AM   K  K    
Sbjct: 1   MNIKSILIEKALSAMAAAGIPEGTNPAVTQSTRAQ----FGDYQINGAMGAAKALK---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP ++AQ I          N  ++ V  K E+A PGF+N+ L          + +   
Sbjct: 53  -TNPRELAQKIID--------NLDVSDVAAKTEIAGPGFINIHLK--------PEFLAAS 95

Query: 325 VQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
           ++    + KL          V+VDFSSPN+AKEMHVGHLRSTIIGD + R LE+ G  V 
Sbjct: 96  LEAANQDAKLGVAEHAQAQNVVVDFSSPNLAKEMHVGHLRSTIIGDAVVRALEFRGDKVT 155

Query: 376 RLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQ 434
           R NHVGDWGTQFGMLIAHL+D     +  ++  +ADL+ FY+++KKRFD++E F  +A  
Sbjct: 156 RQNHVGDWGTQFGMLIAHLEDMLAQGIDLENVALADLETFYRDAKKRFDDEEGFSDKARD 215

Query: 435 CVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYL 491
            VV LQ  D   +K W++  D S +  +++Y +LNVTLT      ES Y   +  ++  L
Sbjct: 216 YVVKLQGGDAHCQKLWQLFIDTSVKHSEEVYKKLNVTLTRDDIMAESAYNDRLAGIITLL 275

Query: 492 EKKGLLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADW 546
           + K +   D G ++++        G   + IV KS GGF Y T+DLAA   R  E  A+ 
Sbjct: 276 KDKNIAVEDQGAQVVFLDELANKDGEPSVFIVQKSGGGFLYATTDLAACDYRSNELGAER 335

Query: 547 IVYVTDLGQGVHFRLLE 563
           I+   D  Q +HF  +E
Sbjct: 336 ILIFVDARQSLHFNQVE 352



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 110/191 (57%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+ +KL D  R +EL+    +E  + V  G +KYADLS +R  DY+F++D ML   G
Sbjct: 400  AVSRASEKLAD--RASELSAEARAEIARKVGIGAVKYADLSKHRTSDYIFNWDTMLSFEG 457

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
             TA YL YAYTR+ SI R AG++S     AA S  +++   +E ALA  LL++ +VL L+
Sbjct: 458  ATAPYLQYAYTRVRSIFRKAGVDS-----AALSGSINIVEPQEKALALKLLQLEEVLDLM 512

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
              +   H LC YLY++++ +  FY+ C  ++ D   +++     RLLL    A+ +    
Sbjct: 513  IGEATPHVLCGYLYELASLYMTFYEACPILKDDVSAEVR---ESRLLLCNLVARTLNTGL 569

Query: 1109 DILNIRTVHKM 1119
            ++L I  + +M
Sbjct: 570  ELLGIEVMEQM 580



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 36/165 (21%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  L +    A+  A    G   A   ST  +    FGD+Q N AM   K  K    
Sbjct: 1   MNIKSILIEKALSAMAAAGIPEGTNPAVTQSTRAQ----FGDYQINGAMGAAKALK---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP ++AQ I          N  ++ V  K E A PGF+N+ L          + +   
Sbjct: 53  -TNPRELAQKIID--------NLDVSDVAAKTEIAGPGFINIHLK--------PEFLAAS 95

Query: 129 VQPPTLNKKL---------RVLVDFSSPNIARKGGFLYPHLPSQI 164
           ++    + KL          V+VDFSSPN+A++      HL S I
Sbjct: 96  LEAANQDAKLGVAEHAQAQNVVVDFSSPNLAKE--MHVGHLRSTI 138


>gi|312882113|ref|ZP_07741863.1| arginyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370249|gb|EFP97751.1| arginyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 577

 Score =  232 bits (591), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 212/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K         NP + AQ     V  EL     L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----MNPREFAQK----VIDEL----KLDGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q    + +        K+  V+ D+S+PN+AKEM V H+RST+IGD 
Sbjct: 82  FINIFLSEEFLATQADYALSDDRLGIDKEKQQTVVTDYSAPNVAKEMAVHHIRSTVIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           ++R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY++SKK F
Sbjct: 142 VTRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELSDLEAFYRDSKKLF 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F  +A   VV LQ  D      W+ + D++    Q+ YDRLNV+L+     GES 
Sbjct: 202 DEDEAFATKARNYVVKLQSGDEYCAGMWKKLVDITMIQNQRNYDRLNVSLSRDDVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+KKGL+E D+G ++++ +   ++   PM ++  KSDGGF Y T+D+A 
Sbjct: 262 YNDMLGGIVADLKKKGLVEEDEGAQVVFLDEFKNKDGEPMGVIVQKSDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   A+ ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H      
Sbjct: 322 AKYRYETLGANRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPENVTLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      S  + DL
Sbjct: 370 -FGMMLGKDGKPFKTRAGGSVKLTDL 394



 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 186/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD ++R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY
Sbjct: 135 STVIGDAVTRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQQESGEVSMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           ++SKK FDEDE F  +A   VV LQ  D      W+ + D++    Q+ YDRLNV+L+  
Sbjct: 195 RDSKKLFDEDEAFATKARNYVVKLQSGDEYCAGMWKKLVDITMIQNQRNYDRLNVSLSRD 254

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   +  +V  L+KKG                                     
Sbjct: 255 DVMGESMYNDMLGGIVADLKKKGLVEEDEGAQVVFLDEFKNKDGEPMGVIVQKSDGGFLY 314

Query: 705 ---NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +++  K     LG   ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGANRVLYFIDSRQHQHLMQAWTIVRKAGYI-PENVTLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G +VKL++LLDE   R+   ++ KN   +L+  E +     VA   +K
Sbjct: 374 LGKDGKPFKTRAGGSVKLTDLLDEAEERAAKLIESKN--PQLSAEEKTAIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ASI   A I+
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFAKAEIS 478



 Score =  116 bits (290), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ +L+  E +     VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPQLSAEEKTAIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI   A I+ + L+       + +  EKE AL   LL+  + +  V  +   H LC 
Sbjct: 467  RVASIFAKAEISMDSLQ-----GDIKIVDEKEKALITKLLQFEEAVKAVASEGLPHVLCT 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    ++   RL LA  TAK +K+  D+L I T+ +M
Sbjct: 522  YLFELAGQFSSFYEACPILNNEDE----SIKQSRLKLAALTAKTIKQGLDLLGIETLERM 577



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K         NP + AQ     V  EL     L  +  K E A PG
Sbjct: 35  QFGDYQANGVMGVAKKLG-----MNPREFAQK----VIDEL----KLDGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q    + +        K+  V+ D+S+PN+A++
Sbjct: 82  FINIFLSEEFLATQADYALSDDRLGIDKEKQQTVVTDYSAPNVAKE 127


>gi|416068902|ref|ZP_11582978.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype f str. D18P1]
 gi|348000529|gb|EGY41309.1| arginyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           serotype f str. D18P1]
          Length = 577

 Score =  232 bits (591), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 130/326 (39%), Positives = 187/326 (57%), Gaps = 22/326 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E+A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E I + + +         K  V+VD+SSPN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+ +KK +
Sbjct: 142 VVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFYRAAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTL E+   GES 
Sbjct: 201 DEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLAEKDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L+K+GL   DDG  +++      +D G + + + K DGGF Y T+D+AA
Sbjct: 261 YNPMLPGIVEDLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFR 560
            + R E  KA   +  +D  Q  H +
Sbjct: 321 AKYRYETLKASRALVFSDTRQSQHMQ 346



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 196/365 (53%), Gaps = 54/365 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHASEMELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KK +DED +F ++A   VV LQ  D   +  W+ +  ++ +  Q  YDRLNVTL E+
Sbjct: 194 RAAKKHYDEDPVFAEKARNYVVKLQSGDEYCRTMWQKLVKITMQQNQHNYDRLNVTLAEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPGIVEDLKKQGLAVEDDGAWVVYLDEFKNKDGGPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+  +++   FG++
Sbjct: 314 TTTDIAAAKYRYETLKASRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFQLEHKNFGIM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSGDTVKL++LLDE + R+   +  K+  T L+  E ++  +AV  G +K
Sbjct: 373 LGKDGKPFKTRSGDTVKLADLLDEAIERAGVLISQKS--TALSEQEKADVIEAVGIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI   + IN  +  +   + + 
Sbjct: 431 YADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNRSQINPAEVEQASLTLTN 490

Query: 875 VEDRC 879
            ++R 
Sbjct: 491 EKERA 495



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + T L+  E ++  +AV  G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KSTALSEQEKADVIEAVGIGSVKYADLSKNRITDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   + IN  ++  A+    ++L +EKE ALA  LL+  + + LV +D   H LC YL
Sbjct: 468  RSIFNRSQINPAEVEQAS----LTLTNEKERALAIKLLQFEEAIQLVAKDGTPHILCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + +     V   RL LA  T + +K+  D+L I+TV +M
Sbjct: 524  YELAGVFSSFYEHCPILNNEDQ----QVKLSRLKLALLTERTLKQGLDLLGIKTVERM 577



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ + +           L  + +K E A PG
Sbjct: 35  QFGDYQANGIMPAAKKLG-----INPREFAQLVLA--------KAELQDIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E + + + +         K  V+VD+SSPN+A++
Sbjct: 82  FINIFLKDGWLAENIGNAVKDSKLGIHHQDKQTVVVDYSSPNVAKE 127


>gi|15802288|ref|NP_288313.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
 gi|12515938|gb|AAG56866.1|AE005410_2 arginine tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
          Length = 577

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTHDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IXKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTHD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIXKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  133 bits (335), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+    L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEXTLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|153950466|ref|YP_001401016.1| arginyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|166987306|sp|A7FID8.1|SYR_YERP3 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|152961961|gb|ABS49422.1| arginyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
          Length = 576

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/443 (35%), Positives = 232/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L  +  KIE+A PGF+N+FL R +  E+++  +   
Sbjct: 53  -MQPRQLAERVVELL--------DLTGIASKIEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V+P T      ++VD+S+PN+AK+MHVGHLRSTIIGD   R L +LGH+V+R N
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQMHVGHLRSTIIGDAAVRTLAFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+++KK +DEDE F  RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASDMGLSDLELFYQQAKKTYDEDEEFALRARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  YDRLNVTLT+    GES Y   + ++V  L+ KG
Sbjct: 217 LQSGDEYCRQMWRKLVDITMAQNQVAYDRLNVTLTKDDVMGESLYNAMLPEIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD I
Sbjct: 277 LAVESEGATVVYLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRI 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++   I+     R   Y+   V   +H+      FGM++   +D  
Sbjct: 334 LYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHHM------FGMMLG--KDGK 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTVKLSDLLDEAVER 400



 Score =  221 bits (562), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 189/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R L +LGH+V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+++KK +DEDE F  RA   VV LQ  D   ++ W  + D++    Q  YDRL
Sbjct: 187 SDLELFYQQAKKTYDEDEEFALRARAYVVKLQSGDEYCRQMWRKLVDITMAQNQVAYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLT+    GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLTKDDVMGESLYNAMLPEIVADLKAKGLAVESEGATVVYLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       I+Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRILYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   EL +   A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAVERAGKLIAEKN--PDMPADELKQVINA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AG++      
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRVVSVFRRAGVDENSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +   AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKQVINAVGIGAVKYADLSKSRTTDYIFDWDNMLALDGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG++   L     + P+ +  ++E ALA  LL+  +++  V R+   H +C YL
Sbjct: 468  VSVFRRAGVDENSL-----TLPLVITEDREAALATRLLQFEEIITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  ++E     +   RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSSFYEHCQILNAESE----EIRQSRLKLAMLTAKTLKQGLDTLGIQTVERM 576



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK------ 122
              P  +A+ +  ++         L  +  KIE A PGF+N+FL R +  E+++      
Sbjct: 53  -MQPRQLAERVVELL--------DLTGIASKIEIAGPGFINIFLDRQWVAEKVEYALTAP 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + V  V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVAPVEPQT------IVVDYSAPNVAKQ 127


>gi|194429348|ref|ZP_03061874.1| arginyl-tRNA synthetase [Escherichia coli B171]
 gi|419316960|ref|ZP_13858772.1| arginyl-tRNA synthetase [Escherichia coli DEC12A]
 gi|419323112|ref|ZP_13864816.1| arginyl-tRNA synthetase [Escherichia coli DEC12B]
 gi|419329113|ref|ZP_13870726.1| arginyl-tRNA synthetase [Escherichia coli DEC12C]
 gi|419334679|ref|ZP_13876218.1| arginyl-tRNA synthetase [Escherichia coli DEC12D]
 gi|419340137|ref|ZP_13881612.1| arginyl-tRNA synthetase [Escherichia coli DEC12E]
 gi|194412655|gb|EDX28951.1| arginyl-tRNA synthetase [Escherichia coli B171]
 gi|378167218|gb|EHX28133.1| arginyl-tRNA synthetase [Escherichia coli DEC12B]
 gi|378170945|gb|EHX31820.1| arginyl-tRNA synthetase [Escherichia coli DEC12A]
 gi|378171678|gb|EHX32541.1| arginyl-tRNA synthetase [Escherichia coli DEC12C]
 gi|378184041|gb|EHX44679.1| arginyl-tRNA synthetase [Escherichia coli DEC12D]
 gi|378190059|gb|EHX50645.1| arginyl-tRNA synthetase [Escherichia coli DEC12E]
          Length = 577

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYESLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYESLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDETLERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 107/190 (56%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   GN
Sbjct: 398  LERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGN 455

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V 
Sbjct: 456  TAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVVA 511

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
            R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   D
Sbjct: 512  REGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGLD 567

Query: 1110 ILNIRTVHKM 1119
             L I TV +M
Sbjct: 568  TLGIETVERM 577



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|226946552|ref|YP_002801625.1| arginyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|259511638|sp|C1DHR7.1|SYR_AZOVD RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|226721479|gb|ACO80650.1| arginyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 579

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 143/361 (39%), Positives = 197/361 (54%), Gaps = 59/361 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+AHL++K     +    +ADL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDVVIRQNHVGDWGTQFGMLLAHLEEK---PASAESELADLEQFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA + VV LQ  +P+  + W+    +S    Q++Y+RL V LT  
Sbjct: 197 RAAKKRFDESEAFADRARELVVRLQAGEPECLRLWQRFNAISLSHCQEVYERLGVRLTPD 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             RGES Y   +  +V  L  KG L+                       + +K G     
Sbjct: 257 DIRGESAYNDELPGIVQALRDKGLLTESEGAQCVFLDEFRNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF++    A++AG +  + T ++ +GFG +
Sbjct: 317 ATTDLASMRYRSQVLKADRVLYFVDQRQALHFQMTFAVARRAGFVR-DDTALEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+   +K KN   EL   EL    +AV  G +K
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLDEAEQRAYALVKGKN--PELPEEELRHIARAVGIGAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG--INSED-PPEPDPS 871
           YADLS +R  DY F+F+ ML   GNTA YLLYAYTR+AS+ R  G  I+  D  P P+  
Sbjct: 434 YADLSKHRTSDYSFNFELMLSFEGNTAPYLLYAYTRVASVFRKLGREIDEIDGSPAPEAG 493

Query: 872 Q 872
           Q
Sbjct: 494 Q 494



 Score =  229 bits (583), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 130/334 (38%), Positives = 193/334 (57%), Gaps = 41/334 (12%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P  +A+ + + + ++ +        + K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGLK-----PRQLAEKLVAALPADAS--------VSKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLR 355
           N F        Q  D +   ++    +++L         RV+VD SSPN+AKEMHVGHLR
Sbjct: 88  NFF--------QNSDALARRLEVALADERLGVRKHGDLQRVVVDLSSPNLAKEMHVGHLR 139

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+AHL++K     +    +ADL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDVVIRQNHVGDWGTQFGMLLAHLEEK---PASAESELADLEQFY 196

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           + +KKRFDE E F  RA + VV LQ  +P+  + W+    +S    Q++Y+RL V LT  
Sbjct: 197 RAAKKRFDESEAFADRARELVVRLQAGEPECLRLWQRFNAISLSHCQEVYERLGVRLTPD 256

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
             RGES Y   +  +V  L  KGLL   +G + ++       +   +P+ + K+ GG+ Y
Sbjct: 257 DIRGESAYNDELPGIVQALRDKGLLTESEGAQCVFLDEFRNAEGNPLPVIVQKAGGGYLY 316

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
            T+DLA++R R +  KAD ++Y  D  Q +HF++
Sbjct: 317 ATTDLASMRYRSQVLKADRVLYFVDQRQALHFQM 350



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 94/167 (56%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   EL    +AV  G +KYADLS +R  DY F+F+ ML   GNTA YLLYAYT
Sbjct: 409  KGKNPELPEEELRHIARAVGIGAVKYADLSKHRTSDYSFNFELMLSFEGNTAPYLLYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+ R  G   +++      +P   E  +E ALA  L +  +VL  V      H LC 
Sbjct: 469  RVASVFRKLGREIDEI----DGSPAP-EAGQELALAARLAQFGEVLGNVAEKGLPHLLCA 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  D   + ++    RLLLA  T + +++
Sbjct: 524  YLYDLAGLFSSFYENCPILTADTPARQQS----RLLLAALTGRTLRQ 566


>gi|82543644|ref|YP_407591.1| arginyl-tRNA synthetase [Shigella boydii Sb227]
 gi|417681473|ref|ZP_12330848.1| arginyl-tRNA synthetase [Shigella boydii 3594-74]
 gi|420351914|ref|ZP_14853079.1| arginyl-tRNA synthetase [Shigella boydii 4444-74]
 gi|109895034|sp|Q322J5.1|SYR_SHIBS RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|81245055|gb|ABB65763.1| arginine tRNA synthetase [Shigella boydii Sb227]
 gi|332096695|gb|EGJ01686.1| arginyl-tRNA synthetase [Shigella boydii 3594-74]
 gi|391285636|gb|EIQ44210.1| arginyl-tRNA synthetase [Shigella boydii 4444-74]
          Length = 577

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWHKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWHKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|68070611|ref|XP_677217.1| arginyl-tRNA synthetase [Plasmodium berghei strain ANKA]
 gi|56497245|emb|CAI04834.1| arginyl-tRNA synthetase, putative [Plasmodium berghei]
          Length = 472

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 138/404 (34%), Positives = 224/404 (55%), Gaps = 38/404 (9%)

Query: 214 VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 273
           +F  ++Q  FP + ++ A V   N     KFG FQCN+A+    I+K  G++ N F+ A 
Sbjct: 14  IFQSSIQKCFPTISEE-AVVTYAN----MKFGHFQCNNAI---NIYKKYGKELN-FENAH 64

Query: 274 SIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG--------- 324
            ++  +   +  N     + D I  +  GF+ V +S+ Y  + +  +  N          
Sbjct: 65  KVSLSIIENINEN-----LFDDINASPQGFITVKISKDYIEKSLLKLYKNNKININVDMD 119

Query: 325 -VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
            +      K   VL+DFSSPNIAKEMHVGHLRSTI+GD+I ++ E+L      +NHVGDW
Sbjct: 120 EIHDGNNAKYENVLIDFSSPNIAKEMHVGHLRSTILGDSICKIFEFLKVKTHTINHVGDW 179

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGM+I ++   +P+Y  + P +  L   Y+E+KK +D D+ F+ ++ +  + LQ  D
Sbjct: 180 GTQFGMIINYVITNYPNYKEEMPELKSLTLLYQEAKKCYDNDKDFEIKSKEYAIKLQEHD 239

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
            D +  W  IC+ S+++F  +Y+ L++ L   GESFY   +   +  L+ K LL  + G 
Sbjct: 240 EDCRYIWTKICEASKKEFDNLYNILDIKLEYYGESFYIPKIPSTLEILKDKNLLT-NIGD 298

Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
            + +  ++ ++P+ + KS+GG+ YD++D+AA+  R++    D I+YVTD GQ  HF  L 
Sbjct: 299 ALCYKSEKYTVPLFLQKSNGGYGYDSTDIAALYYRLKVLNVDSIIYVTDNGQLSHFETLF 358

Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           E       + +  E++  D V+L HVG     FG+++     KF
Sbjct: 359 E-------LCKQAEWVD-DNVKLIHVG-----FGLVLNTDNKKF 389



 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/321 (33%), Positives = 161/321 (50%), Gaps = 48/321 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STI+GD+I ++ E+L      +NHVGDWGTQFGM+I ++   +P+Y  + P +  L   Y
Sbjct: 152 STILGDSICKIFEFLKVKTHTINHVGDWGTQFGMIINYVITNYPNYKEEMPELKSLTLLY 211

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +D D+ F+ ++ +  + LQ  D D +  W  IC+ S+++F  +Y+ L++ L   
Sbjct: 212 QEAKKCYDNDKDFEIKSKEYAIKLQEHDEDCRYIWTKICEASKKEFDNLYNILDIKLEYY 271

Query: 685 GESFY-------------------------QKHMEQLVPYLEKKGN-------------- 705
           GESFY                          K  +  VP   +K N              
Sbjct: 272 GESFYIPKIPSTLEILKDKNLLTNIGDALCYKSEKYTVPLFLQKSNGGYGYDSTDIAALY 331

Query: 706 --LSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
             L +     I+YVTD GQ  HF  L E  K+A  ++ N  ++  VGFG+VL  D KKFK
Sbjct: 332 YRLKVLNVDSIIYVTDNGQLSHFETLFELCKQAEWVDDN-VKLIHVGFGLVLNTDNKKFK 390

Query: 764 TRSGDTVKLSELLDEGLRRSLD------KLKDKNRHTELTPTELSEAQQAVAYGCIKYAD 817
           TRSG  +KL  L++EG  R+        KLK           ++ +  Q +    IKY D
Sbjct: 391 TRSGTNIKLINLINEGTERAKKDLMERIKLKSDEEKNYFEGIDIDKLSQDICVSAIKYFD 450

Query: 818 LSHNRNLDYVFSFDKMLDDRG 838
           +  +RN DY FS+D ML  +G
Sbjct: 451 IKQHRNTDYKFSYDNMLSIKG 471



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 24/145 (16%)

Query: 18  VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQ 77
           +F  ++Q  FP + ++ A V   N     KFG FQCN+A+    I+K  G++ N F+ A 
Sbjct: 14  IFQSSIQKCFPTISEE-AVVTYAN----MKFGHFQCNNAI---NIYKKYGKELN-FENAH 64

Query: 78  SIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG--------- 128
            ++  +   +  N     + D I A+  GF+ V +S+ Y  + +  +  N          
Sbjct: 65  KVSLSIIENINEN-----LFDDINASPQGFITVKISKDYIEKSLLKLYKNNKININVDMD 119

Query: 129 -VQPPTLNKKLRVLVDFSSPNIARK 152
            +      K   VL+DFSSPNIA++
Sbjct: 120 EIHDGNNAKYENVLIDFSSPNIAKE 144


>gi|419355324|ref|ZP_13896586.1| arginyl-tRNA synthetase [Escherichia coli DEC13C]
 gi|419360350|ref|ZP_13901571.1| arginyl-tRNA synthetase [Escherichia coli DEC13D]
 gi|419365501|ref|ZP_13906666.1| arginyl-tRNA synthetase [Escherichia coli DEC13E]
 gi|378202049|gb|EHX62489.1| arginyl-tRNA synthetase [Escherichia coli DEC13C]
 gi|378205280|gb|EHX65695.1| arginyl-tRNA synthetase [Escherichia coli DEC13D]
 gi|378213986|gb|EHX74296.1| arginyl-tRNA synthetase [Escherichia coli DEC13E]
          Length = 577

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLSVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|432372548|ref|ZP_19615593.1| arginyl-tRNA synthetase [Escherichia coli KTE11]
 gi|430897041|gb|ELC19268.1| arginyl-tRNA synthetase [Escherichia coli KTE11]
          Length = 577

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 212/392 (54%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL  V+  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPVFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R L +LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R L +LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINED 479



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN + L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEDQLAAA----PVVIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL  V+  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPVFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|423120959|ref|ZP_17108643.1| arginyl-tRNA synthetase [Klebsiella oxytoca 10-5246]
 gi|376395589|gb|EHT08235.1| arginyl-tRNA synthetase [Klebsiella oxytoca 10-5246]
          Length = 577

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 210/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E +   + +   GV  P       ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAENVNSALASERLGVARPQAQT---IVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   ++DL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ALSDLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE+F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEVFAERARNYVVKLQGGDAYFLEMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   ++DL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LSDLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE+F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEVFAERARNYVVKLQGGDAYFLEMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEQLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R A ++ +
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEVDEQ 479



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEQLANAVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A ++ + L  A    PV +   +E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEVDEQALAAA----PVIITEAREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  I  ++E         RL LA+ TA+ +K+  
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPIITAESEA----ARNSRLKLAQLTARTLKQGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E +   + +   GV  P   +   ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAENVNSALASERLGVARP---QAQTIVVDYSAPNVAKE 127


>gi|449144588|ref|ZP_21775403.1| arginyl-tRNA ligase [Vibrio mimicus CAIM 602]
 gi|449080089|gb|EMB51008.1| arginyl-tRNA ligase [Vibrio mimicus CAIM 602]
          Length = 577

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 210/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 142 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKESGEISMELSDLEAFYRESKKLY 201

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 202 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 261

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+ KGL   DDG ++++    +++   PM ++  K DGGF Y T+D+A 
Sbjct: 262 YNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFQNKDGEPMGVIVQKRDGGFLYTTTDIAC 321

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 322 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPEQVSLEHHA----- 369

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 370 -FGMMLGKDGRPFKTRAGGTVRLADL 394



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 188/347 (54%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY
Sbjct: 135 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKESGEISMELSDLEAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 195 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + K+ G    
Sbjct: 255 NVMGESMYNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFQNKDGEPMGVIVQKRDGGFLY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 315 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PEQVSLEHHAFGMM 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   +L+  E ++    VA   +K
Sbjct: 374 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PDLSADEKAKIANTVAMAAVK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 432 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 478



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ +L+  E ++    VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 407  ESKNPDLSADEKAKIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 466

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 467  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 521

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 522  YLFELAGIFSSFYEACPILVAEQE----SVKQSRLKLAALTAKTIKQGLALLGIETLERM 577



 Score = 44.3 bits (103), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 35  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++      HL S I
Sbjct: 82  FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKE--MHVGHLRSTI 137


>gi|187731263|ref|YP_001880686.1| arginyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|218554464|ref|YP_002387377.1| arginyl-tRNA synthetase [Escherichia coli IAI1]
 gi|300904762|ref|ZP_07122591.1| arginyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300917544|ref|ZP_07134200.1| arginyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|301306901|ref|ZP_07212947.1| arginyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|332278952|ref|ZP_08391365.1| arginyl-tRNA synthetase [Shigella sp. D9]
 gi|415861188|ref|ZP_11534854.1| arginyl-tRNA synthetase [Escherichia coli MS 85-1]
 gi|416259591|ref|ZP_11640007.1| Arginyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
 gi|416292214|ref|ZP_11650119.1| Arginyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|416345500|ref|ZP_11678982.1| Arginyl-tRNA synthetase [Escherichia coli EC4100B]
 gi|419278253|ref|ZP_13820507.1| arginyl-tRNA synthetase [Escherichia coli DEC10E]
 gi|419370301|ref|ZP_13911422.1| arginyl-tRNA synthetase [Escherichia coli DEC14A]
 gi|419375753|ref|ZP_13916782.1| arginyl-tRNA synthetase [Escherichia coli DEC14B]
 gi|419381069|ref|ZP_13922025.1| arginyl-tRNA synthetase [Escherichia coli DEC14C]
 gi|419386342|ref|ZP_13927223.1| arginyl-tRNA synthetase [Escherichia coli DEC14D]
 gi|419391864|ref|ZP_13932678.1| arginyl-tRNA synthetase [Escherichia coli DEC15A]
 gi|419396954|ref|ZP_13937724.1| arginyl-tRNA synthetase [Escherichia coli DEC15B]
 gi|419402278|ref|ZP_13943002.1| arginyl-tRNA synthetase [Escherichia coli DEC15C]
 gi|419407392|ref|ZP_13948082.1| arginyl-tRNA synthetase [Escherichia coli DEC15D]
 gi|419412963|ref|ZP_13953618.1| arginyl-tRNA synthetase [Escherichia coli DEC15E]
 gi|419923767|ref|ZP_14441692.1| arginyl-tRNA synthetase [Escherichia coli 541-15]
 gi|419950164|ref|ZP_14466384.1| arginyl-tRNA synthetase [Escherichia coli CUMT8]
 gi|420325771|ref|ZP_14827530.1| arginyl-tRNA synthetase [Shigella flexneri CCH060]
 gi|420379529|ref|ZP_14879008.1| arginyl-tRNA synthetase [Shigella dysenteriae 225-75]
 gi|421682783|ref|ZP_16122587.1| arginyl-tRNA synthetase [Shigella flexneri 1485-80]
 gi|422761122|ref|ZP_16814881.1| arginyl-tRNA synthetase [Escherichia coli E1167]
 gi|432809539|ref|ZP_20043432.1| arginyl-tRNA synthetase [Escherichia coli KTE101]
 gi|432831856|ref|ZP_20065430.1| arginyl-tRNA synthetase [Escherichia coli KTE135]
 gi|433130419|ref|ZP_20315864.1| arginyl-tRNA synthetase [Escherichia coli KTE163]
 gi|226701378|sp|B7M2G7.1|SYR_ECO8A RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|238689519|sp|B2U4X7.1|SYR_SHIB3 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|187428255|gb|ACD07529.1| arginyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|218361232|emb|CAQ98816.1| arginyl-tRNA synthetase [Escherichia coli IAI1]
 gi|300403322|gb|EFJ86860.1| arginyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300415223|gb|EFJ98533.1| arginyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300837876|gb|EFK65636.1| arginyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|315257291|gb|EFU37259.1| arginyl-tRNA synthetase [Escherichia coli MS 85-1]
 gi|320177414|gb|EFW52415.1| Arginyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
 gi|320187322|gb|EFW62019.1| Arginyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|320198571|gb|EFW73171.1| Arginyl-tRNA synthetase [Escherichia coli EC4100B]
 gi|324118936|gb|EGC12825.1| arginyl-tRNA synthetase [Escherichia coli E1167]
 gi|332101304|gb|EGJ04650.1| arginyl-tRNA synthetase [Shigella sp. D9]
 gi|378129252|gb|EHW90624.1| arginyl-tRNA synthetase [Escherichia coli DEC10E]
 gi|378218688|gb|EHX78959.1| arginyl-tRNA synthetase [Escherichia coli DEC14A]
 gi|378220677|gb|EHX80929.1| arginyl-tRNA synthetase [Escherichia coli DEC14B]
 gi|378229058|gb|EHX89208.1| arginyl-tRNA synthetase [Escherichia coli DEC14C]
 gi|378232165|gb|EHX92267.1| arginyl-tRNA synthetase [Escherichia coli DEC14D]
 gi|378237985|gb|EHX97998.1| arginyl-tRNA synthetase [Escherichia coli DEC15A]
 gi|378245305|gb|EHY05243.1| arginyl-tRNA synthetase [Escherichia coli DEC15B]
 gi|378246812|gb|EHY06731.1| arginyl-tRNA synthetase [Escherichia coli DEC15C]
 gi|378254803|gb|EHY14665.1| arginyl-tRNA synthetase [Escherichia coli DEC15D]
 gi|378259348|gb|EHY19161.1| arginyl-tRNA synthetase [Escherichia coli DEC15E]
 gi|388392599|gb|EIL54015.1| arginyl-tRNA synthetase [Escherichia coli 541-15]
 gi|388417479|gb|EIL77321.1| arginyl-tRNA synthetase [Escherichia coli CUMT8]
 gi|391252200|gb|EIQ11400.1| arginyl-tRNA synthetase [Shigella flexneri CCH060]
 gi|391304222|gb|EIQ62039.1| arginyl-tRNA synthetase [Shigella dysenteriae 225-75]
 gi|404340232|gb|EJZ66660.1| arginyl-tRNA synthetase [Shigella flexneri 1485-80]
 gi|431362307|gb|ELG48885.1| arginyl-tRNA synthetase [Escherichia coli KTE101]
 gi|431375826|gb|ELG61149.1| arginyl-tRNA synthetase [Escherichia coli KTE135]
 gi|431647467|gb|ELJ14951.1| arginyl-tRNA synthetase [Escherichia coli KTE163]
          Length = 577

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|425422719|ref|ZP_18803887.1| arginine--tRNA ligase [Escherichia coli 0.1288]
 gi|408344036|gb|EKJ58424.1| arginine--tRNA ligase [Escherichia coli 0.1288]
          Length = 577

 Score =  232 bits (591), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDDE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDDEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|283832728|ref|ZP_06352469.1| arginine--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291072410|gb|EFE10519.1| arginine--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 208/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  + ++  +       T   K  V+VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLAQHVQQALTCDRLGVTQPAKQTVVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ALADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 186/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARSYVVKLQGGDEYFREMWRKLVDITMSQNQLTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADID 477



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L     +  V +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKADIDENAL----TNAQVIIREDREAQLAARLLQFEETLAVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     +   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENE----EIRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  +       T   K  V+VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAQHVQQALTCDRLGVTQPAKQTVVVDYSAPNVAKE 127


>gi|170769348|ref|ZP_02903801.1| arginyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170121672|gb|EDS90603.1| arginyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   G+  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGIATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (567), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMELADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEISEE 479



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEISEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   G+  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGIATP---EKQTIVVDYSAPNVAKE 127


>gi|215487089|ref|YP_002329520.1| arginyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|254782961|sp|B7USQ3.1|SYR_ECO27 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|215265161|emb|CAS09549.1| arginyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGASVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGASVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 108/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|420304118|ref|ZP_14806125.1| arginine--tRNA ligase [Escherichia coli TW10119]
 gi|444974956|ref|ZP_21292138.1| arginine--tRNA ligase [Escherichia coli 99.1805]
 gi|390816804|gb|EIO83264.1| arginine--tRNA ligase [Escherichia coli TW10119]
 gi|444598260|gb|ELV73196.1| arginine--tRNA ligase [Escherichia coli 99.1805]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTHDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  219 bits (559), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 185/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTHD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +K    ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKT--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 98/170 (57%), Gaps = 8/170 (4%)

Query: 950  ELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 1009
            EL +   AV  G +KYADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A 
Sbjct: 416  ELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAE 475

Query: 1010 INSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFS 1069
            I+ E L  A    PV +  ++E  LA  LL+  + L +V R+   H +C YLYD++  FS
Sbjct: 476  IDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVVAREGTPHVMCAYLYDLAGLFS 531

Query: 1070 EFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             FY++C  +  + E     V   RL LA+ TAK +K   D L I TV +M
Sbjct: 532  GFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGLDTLGIETVERM 577



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|354597884|ref|ZP_09015901.1| Arginyl-tRNA synthetase [Brenneria sp. EniD312]
 gi|353675819|gb|EHD21852.1| Arginyl-tRNA synthetase [Brenneria sp. EniD312]
          Length = 576

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 150/414 (36%), Positives = 223/414 (53%), Gaps = 57/414 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+  A   +G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALAAAGAPIG----SEAQVRQSAKVQFGDYQANGVMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++        +L  ++ K E+A PGF+N+FL + +   Q ++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALDGIVTKTEIAGPGFINIFLDKQWVASQAENALNDP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V  V+P T      ++VD+S+PN+AKEMHVGHLRSTIIGD   R LE+LGH V+R N
Sbjct: 104 KLGVTPVEPQT------IVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHHVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK +D+D  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KVQNDNAGEMALSDLEAFYREAKKHYDDDAAFAERARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   ++ W  + D++    Q  Y+RLNVTLT+    GES Y   + ++V  L+ KG
Sbjct: 217 LQGGDEYCRQLWRKLIDITMTQNQLTYNRLNVTLTKDDVMGESLYNSMLPEIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLNADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
           +Y  D  Q  H  L++   I+     R   Y+  D V L H       FGM++ 
Sbjct: 334 LYYIDSRQ--HQHLMQAWAIV-----RKAGYV-PDSVSLEH-----HMFGMMLG 374



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 189/362 (52%), Gaps = 54/362 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAYLE-KVQNDNAGEMALSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +D+D  F +RA   VV LQ  D   ++ W  + D++    Q  Y+RLNVTLT+ 
Sbjct: 194 REAKKHYDDDAAFAERARGYVVKLQGGDEYCRQLWRKLIDITMTQNQLTYNRLNVTLTKD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + ++V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNSMLPEIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLNADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PDSVSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T+KLS+LLDE   R+   + +KN   E    EL +    V+ G +K
Sbjct: 373 LGKDGKPFKTRAGGTIKLSDLLDEAYERACQLIAEKNPQME--SDELQQLANVVSIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ SI + A I  +   +P     E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVISIFKRAAIQEDSLTQPITLHEE 490

Query: 875 VE 876
            E
Sbjct: 491 RE 492



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 105/188 (55%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   + +KN   E    EL +    V+ G +KYADLS NR  DY+F +D ML   GNTA
Sbjct: 400  RACQLIAEKNPQME--SDELQQLANVVSIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ SI + A I  + L     + P++L  E+EF LA  LL+  + +  V RD
Sbjct: 458  PYMQYAYTRVISIFKRAAIQEDSL-----TQPITLHEEREFVLATRLLQFEETVTTVARD 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  + +     +   RL LA  TAK +K+  D L
Sbjct: 513  GTPHVMCAYLYDLAGLFSGFYEHCPILNAEND----ELRQSRLKLALLTAKTLKQGLDTL 568

Query: 1112 NIRTVHKM 1119
             I TV KM
Sbjct: 569  GIDTVEKM 576



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+  A   +G    S A   +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQALAAAGAPIG----SEAQVRQSAKVQFGDYQANGVMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++        +L  ++ K E A PGF+N+FL + +   Q ++ +   
Sbjct: 53  -MPPRQLAEKVVQLL--------ALDGIVTKTEIAGPGFINIFLDKQWVASQAENALNDP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              V  V+P T      ++VD+S+PN+A++
Sbjct: 104 KLGVTPVEPQT------IVVDYSAPNVAKE 127


>gi|293415191|ref|ZP_06657834.1| arginyl-tRNA synthetase [Escherichia coli B185]
 gi|331653286|ref|ZP_08354291.1| arginine--tRNA ligase [Escherichia coli M718]
 gi|291432839|gb|EFF05818.1| arginyl-tRNA synthetase [Escherichia coli B185]
 gi|331049384|gb|EGI21456.1| arginine--tRNA ligase [Escherichia coli M718]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLATA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|290508794|ref|ZP_06548165.1| arginyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|289778188|gb|EFD86185.1| arginyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +  ++   +ADL+ FY+E+K
Sbjct: 139 GDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENASEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDQYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 188/347 (54%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +  ++   +ADL+ FY
Sbjct: 135 STIIGDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENASEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDQYFLQMWRKLVDITMSQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL    + V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELENLAKVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R AGI+
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGID 477



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL    + V  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELENLAKVVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AGI+      A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAGIDEN----AMIDAPVVIAEDREAQLAARLLQFEETLSVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKE 127


>gi|15831840|ref|NP_310613.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168747906|ref|ZP_02772928.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|168757913|ref|ZP_02782920.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|168770862|ref|ZP_02795869.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|168776574|ref|ZP_02801581.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|168783179|ref|ZP_02808186.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|168789744|ref|ZP_02814751.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|168801885|ref|ZP_02826892.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|195939580|ref|ZP_03084962.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|208810380|ref|ZP_03252256.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208816722|ref|ZP_03257842.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208818546|ref|ZP_03258866.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209395919|ref|YP_002270960.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|254793500|ref|YP_003078337.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|261227623|ref|ZP_05941904.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258211|ref|ZP_05950744.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|387882984|ref|YP_006313286.1| arginyl-tRNA synthetase [Escherichia coli Xuzhou21]
 gi|416312387|ref|ZP_11657588.1| Arginyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
 gi|416323102|ref|ZP_11664711.1| Arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
 gi|416327357|ref|ZP_11667364.1| Arginyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
 gi|416773964|ref|ZP_11873958.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|419045737|ref|ZP_13592683.1| arginyl-tRNA synthetase [Escherichia coli DEC3A]
 gi|419051414|ref|ZP_13598295.1| arginyl-tRNA synthetase [Escherichia coli DEC3B]
 gi|419057416|ref|ZP_13604231.1| arginyl-tRNA synthetase [Escherichia coli DEC3C]
 gi|419062797|ref|ZP_13609536.1| arginyl-tRNA synthetase [Escherichia coli DEC3D]
 gi|419069711|ref|ZP_13615346.1| arginyl-tRNA synthetase [Escherichia coli DEC3E]
 gi|419080931|ref|ZP_13626388.1| arginyl-tRNA synthetase [Escherichia coli DEC4A]
 gi|419086566|ref|ZP_13631936.1| arginyl-tRNA synthetase [Escherichia coli DEC4B]
 gi|419092720|ref|ZP_13638013.1| arginyl-tRNA synthetase [Escherichia coli DEC4C]
 gi|419098509|ref|ZP_13643722.1| arginyl-tRNA synthetase [Escherichia coli DEC4D]
 gi|419104189|ref|ZP_13649330.1| arginyl-tRNA synthetase [Escherichia coli DEC4E]
 gi|419109743|ref|ZP_13654810.1| arginyl-tRNA synthetase [Escherichia coli DEC4F]
 gi|420269744|ref|ZP_14772116.1| arginine--tRNA ligase [Escherichia coli PA22]
 gi|420275641|ref|ZP_14777942.1| arginine--tRNA ligase [Escherichia coli PA40]
 gi|420286803|ref|ZP_14789000.1| arginine--tRNA ligase [Escherichia coli TW10246]
 gi|420292623|ref|ZP_14794755.1| arginine--tRNA ligase [Escherichia coli TW11039]
 gi|420298431|ref|ZP_14800493.1| arginine--tRNA ligase [Escherichia coli TW09109]
 gi|420309784|ref|ZP_14811728.1| arginine--tRNA ligase [Escherichia coli EC1738]
 gi|420315328|ref|ZP_14817211.1| arginine--tRNA ligase [Escherichia coli EC1734]
 gi|421812558|ref|ZP_16248305.1| arginine--tRNA ligase [Escherichia coli 8.0416]
 gi|421818592|ref|ZP_16254104.1| arginine--tRNA ligase [Escherichia coli 10.0821]
 gi|421821457|ref|ZP_16256911.1| arginine--tRNA ligase [Escherichia coli FRIK920]
 gi|421831100|ref|ZP_16266398.1| arginine--tRNA ligase [Escherichia coli PA7]
 gi|423711562|ref|ZP_17685871.1| arginine--tRNA ligase [Escherichia coli PA31]
 gi|424077717|ref|ZP_17814771.1| arginine--tRNA ligase [Escherichia coli FDA505]
 gi|424084094|ref|ZP_17820654.1| arginine--tRNA ligase [Escherichia coli FDA517]
 gi|424090513|ref|ZP_17826541.1| arginine--tRNA ligase [Escherichia coli FRIK1996]
 gi|424097039|ref|ZP_17832458.1| arginine--tRNA ligase [Escherichia coli FRIK1985]
 gi|424103377|ref|ZP_17838253.1| arginine--tRNA ligase [Escherichia coli FRIK1990]
 gi|424110100|ref|ZP_17844419.1| arginine--tRNA ligase [Escherichia coli 93-001]
 gi|424115806|ref|ZP_17849737.1| arginine--tRNA ligase [Escherichia coli PA3]
 gi|424122175|ref|ZP_17855588.1| arginine--tRNA ligase [Escherichia coli PA5]
 gi|424128300|ref|ZP_17861276.1| arginine--tRNA ligase [Escherichia coli PA9]
 gi|424134491|ref|ZP_17867037.1| arginine--tRNA ligase [Escherichia coli PA10]
 gi|424141130|ref|ZP_17873108.1| arginine--tRNA ligase [Escherichia coli PA14]
 gi|424147557|ref|ZP_17879018.1| arginine--tRNA ligase [Escherichia coli PA15]
 gi|424153490|ref|ZP_17884505.1| arginine--tRNA ligase [Escherichia coli PA24]
 gi|424235983|ref|ZP_17889956.1| arginine--tRNA ligase [Escherichia coli PA25]
 gi|424313583|ref|ZP_17895875.1| arginine--tRNA ligase [Escherichia coli PA28]
 gi|424449913|ref|ZP_17901687.1| arginine--tRNA ligase [Escherichia coli PA32]
 gi|424456082|ref|ZP_17907310.1| arginine--tRNA ligase [Escherichia coli PA33]
 gi|424462389|ref|ZP_17912959.1| arginine--tRNA ligase [Escherichia coli PA39]
 gi|424468787|ref|ZP_17918701.1| arginine--tRNA ligase [Escherichia coli PA41]
 gi|424475372|ref|ZP_17924781.1| arginine--tRNA ligase [Escherichia coli PA42]
 gi|424481124|ref|ZP_17930166.1| arginine--tRNA ligase [Escherichia coli TW07945]
 gi|424487292|ref|ZP_17935919.1| arginine--tRNA ligase [Escherichia coli TW09098]
 gi|424493702|ref|ZP_17941605.1| arginine--tRNA ligase [Escherichia coli TW09195]
 gi|424500556|ref|ZP_17947556.1| arginine--tRNA ligase [Escherichia coli EC4203]
 gi|424506711|ref|ZP_17953224.1| arginine--tRNA ligase [Escherichia coli EC4196]
 gi|424514198|ref|ZP_17958976.1| arginine--tRNA ligase [Escherichia coli TW14313]
 gi|424520489|ref|ZP_17964683.1| arginine--tRNA ligase [Escherichia coli TW14301]
 gi|424526397|ref|ZP_17970181.1| arginine--tRNA ligase [Escherichia coli EC4421]
 gi|424532562|ref|ZP_17975967.1| arginine--tRNA ligase [Escherichia coli EC4422]
 gi|424538564|ref|ZP_17981581.1| arginine--tRNA ligase [Escherichia coli EC4013]
 gi|424544531|ref|ZP_17987055.1| arginine--tRNA ligase [Escherichia coli EC4402]
 gi|424550796|ref|ZP_17992743.1| arginine--tRNA ligase [Escherichia coli EC4439]
 gi|424557042|ref|ZP_17998519.1| arginine--tRNA ligase [Escherichia coli EC4436]
 gi|424563390|ref|ZP_18004448.1| arginine--tRNA ligase [Escherichia coli EC4437]
 gi|424569463|ref|ZP_18010114.1| arginine--tRNA ligase [Escherichia coli EC4448]
 gi|424575589|ref|ZP_18015762.1| arginine--tRNA ligase [Escherichia coli EC1845]
 gi|424581459|ref|ZP_18021181.1| arginine--tRNA ligase [Escherichia coli EC1863]
 gi|425098295|ref|ZP_18501089.1| arginine--tRNA ligase [Escherichia coli 3.4870]
 gi|425104475|ref|ZP_18506840.1| arginine--tRNA ligase [Escherichia coli 5.2239]
 gi|425110305|ref|ZP_18512302.1| arginine--tRNA ligase [Escherichia coli 6.0172]
 gi|425126094|ref|ZP_18527358.1| arginine--tRNA ligase [Escherichia coli 8.0586]
 gi|425131950|ref|ZP_18532853.1| arginine--tRNA ligase [Escherichia coli 8.2524]
 gi|425138318|ref|ZP_18538787.1| arginine--tRNA ligase [Escherichia coli 10.0833]
 gi|425144277|ref|ZP_18544338.1| arginine--tRNA ligase [Escherichia coli 10.0869]
 gi|425150344|ref|ZP_18550025.1| arginine--tRNA ligase [Escherichia coli 88.0221]
 gi|425156190|ref|ZP_18555517.1| arginine--tRNA ligase [Escherichia coli PA34]
 gi|425168375|ref|ZP_18566921.1| arginine--tRNA ligase [Escherichia coli FDA507]
 gi|425174464|ref|ZP_18572635.1| arginine--tRNA ligase [Escherichia coli FDA504]
 gi|425180405|ref|ZP_18578185.1| arginine--tRNA ligase [Escherichia coli FRIK1999]
 gi|425186642|ref|ZP_18584001.1| arginine--tRNA ligase [Escherichia coli FRIK1997]
 gi|425193511|ref|ZP_18590360.1| arginine--tRNA ligase [Escherichia coli NE1487]
 gi|425199903|ref|ZP_18596220.1| arginine--tRNA ligase [Escherichia coli NE037]
 gi|425206349|ref|ZP_18602229.1| arginine--tRNA ligase [Escherichia coli FRIK2001]
 gi|425212085|ref|ZP_18607571.1| arginine--tRNA ligase [Escherichia coli PA4]
 gi|425218214|ref|ZP_18613260.1| arginine--tRNA ligase [Escherichia coli PA23]
 gi|425224730|ref|ZP_18619293.1| arginine--tRNA ligase [Escherichia coli PA49]
 gi|425230964|ref|ZP_18625092.1| arginine--tRNA ligase [Escherichia coli PA45]
 gi|425237114|ref|ZP_18630873.1| arginine--tRNA ligase [Escherichia coli TT12B]
 gi|425243214|ref|ZP_18636593.1| arginine--tRNA ligase [Escherichia coli MA6]
 gi|425255113|ref|ZP_18647705.1| arginine--tRNA ligase [Escherichia coli CB7326]
 gi|425261400|ref|ZP_18653487.1| arginine--tRNA ligase [Escherichia coli EC96038]
 gi|425294893|ref|ZP_18685177.1| arginine--tRNA ligase [Escherichia coli PA38]
 gi|425311580|ref|ZP_18700825.1| arginine--tRNA ligase [Escherichia coli EC1735]
 gi|425317507|ref|ZP_18706360.1| arginine--tRNA ligase [Escherichia coli EC1736]
 gi|425323612|ref|ZP_18712045.1| arginine--tRNA ligase [Escherichia coli EC1737]
 gi|425329775|ref|ZP_18717742.1| arginine--tRNA ligase [Escherichia coli EC1846]
 gi|425335942|ref|ZP_18723432.1| arginine--tRNA ligase [Escherichia coli EC1847]
 gi|425342367|ref|ZP_18729347.1| arginine--tRNA ligase [Escherichia coli EC1848]
 gi|425348178|ref|ZP_18734750.1| arginine--tRNA ligase [Escherichia coli EC1849]
 gi|425354479|ref|ZP_18740624.1| arginine--tRNA ligase [Escherichia coli EC1850]
 gi|425360451|ref|ZP_18746184.1| arginine--tRNA ligase [Escherichia coli EC1856]
 gi|425366577|ref|ZP_18751863.1| arginine--tRNA ligase [Escherichia coli EC1862]
 gi|425373012|ref|ZP_18757747.1| arginine--tRNA ligase [Escherichia coli EC1864]
 gi|425385836|ref|ZP_18769484.1| arginine--tRNA ligase [Escherichia coli EC1866]
 gi|425392524|ref|ZP_18775723.1| arginine--tRNA ligase [Escherichia coli EC1868]
 gi|425398679|ref|ZP_18781468.1| arginine--tRNA ligase [Escherichia coli EC1869]
 gi|425404712|ref|ZP_18787043.1| arginine--tRNA ligase [Escherichia coli EC1870]
 gi|425411276|ref|ZP_18793119.1| arginine--tRNA ligase [Escherichia coli NE098]
 gi|425417584|ref|ZP_18798929.1| arginine--tRNA ligase [Escherichia coli FRIK523]
 gi|425428838|ref|ZP_18809532.1| arginine--tRNA ligase [Escherichia coli 0.1304]
 gi|428947198|ref|ZP_19019585.1| arginine--tRNA ligase [Escherichia coli 88.1467]
 gi|428953434|ref|ZP_19025283.1| arginine--tRNA ligase [Escherichia coli 88.1042]
 gi|428959355|ref|ZP_19030735.1| arginine--tRNA ligase [Escherichia coli 89.0511]
 gi|428965808|ref|ZP_19036665.1| arginine--tRNA ligase [Escherichia coli 90.0091]
 gi|428971588|ref|ZP_19042007.1| arginine--tRNA ligase [Escherichia coli 90.0039]
 gi|428978198|ref|ZP_19048087.1| arginine--tRNA ligase [Escherichia coli 90.2281]
 gi|428983962|ref|ZP_19053417.1| arginine--tRNA ligase [Escherichia coli 93.0055]
 gi|428990181|ref|ZP_19059228.1| arginine--tRNA ligase [Escherichia coli 93.0056]
 gi|428995954|ref|ZP_19064635.1| arginine--tRNA ligase [Escherichia coli 94.0618]
 gi|429002077|ref|ZP_19070316.1| arginine--tRNA ligase [Escherichia coli 95.0183]
 gi|429008325|ref|ZP_19075927.1| arginine--tRNA ligase [Escherichia coli 95.1288]
 gi|429014812|ref|ZP_19081781.1| arginine--tRNA ligase [Escherichia coli 95.0943]
 gi|429020667|ref|ZP_19087242.1| arginine--tRNA ligase [Escherichia coli 96.0428]
 gi|429026727|ref|ZP_19092822.1| arginine--tRNA ligase [Escherichia coli 96.0427]
 gi|429032801|ref|ZP_19098407.1| arginine--tRNA ligase [Escherichia coli 96.0939]
 gi|429038946|ref|ZP_19104136.1| arginine--tRNA ligase [Escherichia coli 96.0932]
 gi|429044919|ref|ZP_19109686.1| arginine--tRNA ligase [Escherichia coli 96.0107]
 gi|429050429|ref|ZP_19115029.1| arginine--tRNA ligase [Escherichia coli 97.0003]
 gi|429055668|ref|ZP_19120060.1| arginine--tRNA ligase [Escherichia coli 97.1742]
 gi|429061312|ref|ZP_19125379.1| arginine--tRNA ligase [Escherichia coli 97.0007]
 gi|429067402|ref|ZP_19130948.1| arginine--tRNA ligase [Escherichia coli 99.0672]
 gi|429073407|ref|ZP_19136698.1| arginine--tRNA ligase [Escherichia coli 99.0678]
 gi|429078732|ref|ZP_19141896.1| arginine--tRNA ligase [Escherichia coli 99.0713]
 gi|429826652|ref|ZP_19357788.1| arginine--tRNA ligase [Escherichia coli 96.0109]
 gi|429832925|ref|ZP_19363405.1| arginine--tRNA ligase [Escherichia coli 97.0010]
 gi|444925092|ref|ZP_21244498.1| arginine--tRNA ligase [Escherichia coli 09BKT078844]
 gi|444930958|ref|ZP_21250042.1| arginine--tRNA ligase [Escherichia coli 99.0814]
 gi|444936239|ref|ZP_21255075.1| arginine--tRNA ligase [Escherichia coli 99.0815]
 gi|444941872|ref|ZP_21260445.1| arginine--tRNA ligase [Escherichia coli 99.0816]
 gi|444947373|ref|ZP_21265728.1| arginine--tRNA ligase [Escherichia coli 99.0839]
 gi|444953062|ref|ZP_21271203.1| arginine--tRNA ligase [Escherichia coli 99.0848]
 gi|444958567|ref|ZP_21276467.1| arginine--tRNA ligase [Escherichia coli 99.1753]
 gi|444963772|ref|ZP_21281431.1| arginine--tRNA ligase [Escherichia coli 99.1775]
 gi|444969615|ref|ZP_21287022.1| arginine--tRNA ligase [Escherichia coli 99.1793]
 gi|444980451|ref|ZP_21297394.1| arginine--tRNA ligase [Escherichia coli ATCC 700728]
 gi|444985773|ref|ZP_21302588.1| arginine--tRNA ligase [Escherichia coli PA11]
 gi|444991059|ref|ZP_21307741.1| arginine--tRNA ligase [Escherichia coli PA19]
 gi|444996271|ref|ZP_21312810.1| arginine--tRNA ligase [Escherichia coli PA13]
 gi|445001893|ref|ZP_21318311.1| arginine--tRNA ligase [Escherichia coli PA2]
 gi|445007356|ref|ZP_21323639.1| arginine--tRNA ligase [Escherichia coli PA47]
 gi|445012476|ref|ZP_21328616.1| arginine--tRNA ligase [Escherichia coli PA48]
 gi|445018210|ref|ZP_21334205.1| arginine--tRNA ligase [Escherichia coli PA8]
 gi|445023861|ref|ZP_21339719.1| arginine--tRNA ligase [Escherichia coli 7.1982]
 gi|445029102|ref|ZP_21344814.1| arginine--tRNA ligase [Escherichia coli 99.1781]
 gi|445034545|ref|ZP_21350107.1| arginine--tRNA ligase [Escherichia coli 99.1762]
 gi|445040262|ref|ZP_21355668.1| arginine--tRNA ligase [Escherichia coli PA35]
 gi|445045382|ref|ZP_21360674.1| arginine--tRNA ligase [Escherichia coli 3.4880]
 gi|445050980|ref|ZP_21366074.1| arginine--tRNA ligase [Escherichia coli 95.0083]
 gi|445056790|ref|ZP_21371679.1| arginine--tRNA ligase [Escherichia coli 99.0670]
 gi|452968369|ref|ZP_21966596.1| arginyl-tRNA ligase [Escherichia coli O157:H7 str. EC4009]
 gi|21542249|sp|Q8XCH2.1|SYR_ECO57 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|238065087|sp|B5YR22.1|SYR_ECO5E RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|13362054|dbj|BAB36009.1| arginine tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|187768070|gb|EDU31914.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188017552|gb|EDU55674.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|188999443|gb|EDU68429.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189355181|gb|EDU73600.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189360270|gb|EDU78689.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189370702|gb|EDU89118.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|189376028|gb|EDU94444.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|208724896|gb|EDZ74603.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208731065|gb|EDZ79754.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208738669|gb|EDZ86351.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209157319|gb|ACI34752.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209767330|gb|ACI81977.1| arginine tRNA synthetase [Escherichia coli]
 gi|209767332|gb|ACI81978.1| arginine tRNA synthetase [Escherichia coli]
 gi|209767336|gb|ACI81980.1| arginine tRNA synthetase [Escherichia coli]
 gi|254592900|gb|ACT72261.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|320188575|gb|EFW63237.1| Arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
 gi|320641730|gb|EFX11118.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|326342254|gb|EGD66035.1| Arginyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
 gi|326343804|gb|EGD67566.1| Arginyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
 gi|377895334|gb|EHU59747.1| arginyl-tRNA synthetase [Escherichia coli DEC3A]
 gi|377895738|gb|EHU60149.1| arginyl-tRNA synthetase [Escherichia coli DEC3B]
 gi|377906697|gb|EHU70939.1| arginyl-tRNA synthetase [Escherichia coli DEC3C]
 gi|377912034|gb|EHU76199.1| arginyl-tRNA synthetase [Escherichia coli DEC3D]
 gi|377914002|gb|EHU78130.1| arginyl-tRNA synthetase [Escherichia coli DEC3E]
 gi|377928413|gb|EHU92324.1| arginyl-tRNA synthetase [Escherichia coli DEC4A]
 gi|377932986|gb|EHU96832.1| arginyl-tRNA synthetase [Escherichia coli DEC4B]
 gi|377944009|gb|EHV07718.1| arginyl-tRNA synthetase [Escherichia coli DEC4C]
 gi|377944825|gb|EHV08527.1| arginyl-tRNA synthetase [Escherichia coli DEC4D]
 gi|377950002|gb|EHV13633.1| arginyl-tRNA synthetase [Escherichia coli DEC4E]
 gi|377958950|gb|EHV22462.1| arginyl-tRNA synthetase [Escherichia coli DEC4F]
 gi|386796442|gb|AFJ29476.1| arginyl-tRNA synthetase [Escherichia coli Xuzhou21]
 gi|390644916|gb|EIN24105.1| arginine--tRNA ligase [Escherichia coli FDA517]
 gi|390645154|gb|EIN24337.1| arginine--tRNA ligase [Escherichia coli FRIK1996]
 gi|390645994|gb|EIN25132.1| arginine--tRNA ligase [Escherichia coli FDA505]
 gi|390663584|gb|EIN41080.1| arginine--tRNA ligase [Escherichia coli 93-001]
 gi|390664858|gb|EIN42191.1| arginine--tRNA ligase [Escherichia coli FRIK1985]
 gi|390666015|gb|EIN43221.1| arginine--tRNA ligase [Escherichia coli FRIK1990]
 gi|390681575|gb|EIN57368.1| arginine--tRNA ligase [Escherichia coli PA3]
 gi|390684618|gb|EIN60229.1| arginine--tRNA ligase [Escherichia coli PA5]
 gi|390685597|gb|EIN61067.1| arginine--tRNA ligase [Escherichia coli PA9]
 gi|390701446|gb|EIN75670.1| arginine--tRNA ligase [Escherichia coli PA10]
 gi|390703110|gb|EIN77161.1| arginine--tRNA ligase [Escherichia coli PA15]
 gi|390703795|gb|EIN77790.1| arginine--tRNA ligase [Escherichia coli PA14]
 gi|390715453|gb|EIN88298.1| arginine--tRNA ligase [Escherichia coli PA22]
 gi|390726838|gb|EIN99266.1| arginine--tRNA ligase [Escherichia coli PA25]
 gi|390727382|gb|EIN99799.1| arginine--tRNA ligase [Escherichia coli PA24]
 gi|390729430|gb|EIO01603.1| arginine--tRNA ligase [Escherichia coli PA28]
 gi|390745113|gb|EIO15933.1| arginine--tRNA ligase [Escherichia coli PA32]
 gi|390745954|gb|EIO16729.1| arginine--tRNA ligase [Escherichia coli PA31]
 gi|390747541|gb|EIO18094.1| arginine--tRNA ligase [Escherichia coli PA33]
 gi|390759422|gb|EIO28820.1| arginine--tRNA ligase [Escherichia coli PA40]
 gi|390769905|gb|EIO38801.1| arginine--tRNA ligase [Escherichia coli PA41]
 gi|390771343|gb|EIO40030.1| arginine--tRNA ligase [Escherichia coli PA39]
 gi|390771712|gb|EIO40367.1| arginine--tRNA ligase [Escherichia coli PA42]
 gi|390790983|gb|EIO58378.1| arginine--tRNA ligase [Escherichia coli TW10246]
 gi|390797041|gb|EIO64307.1| arginine--tRNA ligase [Escherichia coli TW07945]
 gi|390798422|gb|EIO65618.1| arginine--tRNA ligase [Escherichia coli TW11039]
 gi|390807930|gb|EIO74779.1| arginine--tRNA ligase [Escherichia coli TW09109]
 gi|390809743|gb|EIO76525.1| arginine--tRNA ligase [Escherichia coli TW09098]
 gi|390829292|gb|EIO94900.1| arginine--tRNA ligase [Escherichia coli EC4203]
 gi|390832314|gb|EIO97575.1| arginine--tRNA ligase [Escherichia coli TW09195]
 gi|390833897|gb|EIO98873.1| arginine--tRNA ligase [Escherichia coli EC4196]
 gi|390848990|gb|EIP12438.1| arginine--tRNA ligase [Escherichia coli TW14301]
 gi|390850657|gb|EIP14018.1| arginine--tRNA ligase [Escherichia coli TW14313]
 gi|390852156|gb|EIP15325.1| arginine--tRNA ligase [Escherichia coli EC4421]
 gi|390863651|gb|EIP25783.1| arginine--tRNA ligase [Escherichia coli EC4422]
 gi|390868011|gb|EIP29777.1| arginine--tRNA ligase [Escherichia coli EC4013]
 gi|390873659|gb|EIP34840.1| arginine--tRNA ligase [Escherichia coli EC4402]
 gi|390880471|gb|EIP41147.1| arginine--tRNA ligase [Escherichia coli EC4439]
 gi|390885070|gb|EIP45319.1| arginine--tRNA ligase [Escherichia coli EC4436]
 gi|390896573|gb|EIP55959.1| arginine--tRNA ligase [Escherichia coli EC4437]
 gi|390900566|gb|EIP59785.1| arginine--tRNA ligase [Escherichia coli EC4448]
 gi|390901231|gb|EIP60415.1| arginine--tRNA ligase [Escherichia coli EC1738]
 gi|390909029|gb|EIP67830.1| arginine--tRNA ligase [Escherichia coli EC1734]
 gi|390921270|gb|EIP79493.1| arginine--tRNA ligase [Escherichia coli EC1863]
 gi|390922149|gb|EIP80257.1| arginine--tRNA ligase [Escherichia coli EC1845]
 gi|408067142|gb|EKH01585.1| arginine--tRNA ligase [Escherichia coli PA7]
 gi|408076253|gb|EKH10481.1| arginine--tRNA ligase [Escherichia coli PA34]
 gi|408077974|gb|EKH12155.1| arginine--tRNA ligase [Escherichia coli FRIK920]
 gi|408084497|gb|EKH18269.1| arginine--tRNA ligase [Escherichia coli FDA507]
 gi|408093262|gb|EKH26361.1| arginine--tRNA ligase [Escherichia coli FDA504]
 gi|408099132|gb|EKH31786.1| arginine--tRNA ligase [Escherichia coli FRIK1999]
 gi|408106947|gb|EKH39038.1| arginine--tRNA ligase [Escherichia coli FRIK1997]
 gi|408110687|gb|EKH42474.1| arginine--tRNA ligase [Escherichia coli NE1487]
 gi|408117537|gb|EKH48716.1| arginine--tRNA ligase [Escherichia coli NE037]
 gi|408123617|gb|EKH54356.1| arginine--tRNA ligase [Escherichia coli FRIK2001]
 gi|408129591|gb|EKH59810.1| arginine--tRNA ligase [Escherichia coli PA4]
 gi|408141059|gb|EKH70539.1| arginine--tRNA ligase [Escherichia coli PA23]
 gi|408142681|gb|EKH72030.1| arginine--tRNA ligase [Escherichia coli PA49]
 gi|408147867|gb|EKH76776.1| arginine--tRNA ligase [Escherichia coli PA45]
 gi|408156212|gb|EKH84419.1| arginine--tRNA ligase [Escherichia coli TT12B]
 gi|408163066|gb|EKH90947.1| arginine--tRNA ligase [Escherichia coli MA6]
 gi|408176681|gb|EKI03518.1| arginine--tRNA ligase [Escherichia coli CB7326]
 gi|408183630|gb|EKI10055.1| arginine--tRNA ligase [Escherichia coli EC96038]
 gi|408220412|gb|EKI44468.1| arginine--tRNA ligase [Escherichia coli PA38]
 gi|408229661|gb|EKI53088.1| arginine--tRNA ligase [Escherichia coli EC1735]
 gi|408241113|gb|EKI63763.1| arginine--tRNA ligase [Escherichia coli EC1736]
 gi|408245188|gb|EKI67581.1| arginine--tRNA ligase [Escherichia coli EC1737]
 gi|408249567|gb|EKI71497.1| arginine--tRNA ligase [Escherichia coli EC1846]
 gi|408260053|gb|EKI81188.1| arginine--tRNA ligase [Escherichia coli EC1847]
 gi|408262035|gb|EKI82988.1| arginine--tRNA ligase [Escherichia coli EC1848]
 gi|408267685|gb|EKI88132.1| arginine--tRNA ligase [Escherichia coli EC1849]
 gi|408277602|gb|EKI97389.1| arginine--tRNA ligase [Escherichia coli EC1850]
 gi|408279925|gb|EKI99508.1| arginine--tRNA ligase [Escherichia coli EC1856]
 gi|408291575|gb|EKJ10172.1| arginine--tRNA ligase [Escherichia coli EC1862]
 gi|408293928|gb|EKJ12349.1| arginine--tRNA ligase [Escherichia coli EC1864]
 gi|408310745|gb|EKJ27786.1| arginine--tRNA ligase [Escherichia coli EC1868]
 gi|408311401|gb|EKJ28411.1| arginine--tRNA ligase [Escherichia coli EC1866]
 gi|408323639|gb|EKJ39601.1| arginine--tRNA ligase [Escherichia coli EC1869]
 gi|408328080|gb|EKJ43697.1| arginine--tRNA ligase [Escherichia coli NE098]
 gi|408329019|gb|EKJ44558.1| arginine--tRNA ligase [Escherichia coli EC1870]
 gi|408339117|gb|EKJ53737.1| arginine--tRNA ligase [Escherichia coli FRIK523]
 gi|408348781|gb|EKJ62862.1| arginine--tRNA ligase [Escherichia coli 0.1304]
 gi|408551695|gb|EKK28933.1| arginine--tRNA ligase [Escherichia coli 5.2239]
 gi|408552598|gb|EKK29770.1| arginine--tRNA ligase [Escherichia coli 3.4870]
 gi|408553168|gb|EKK30299.1| arginine--tRNA ligase [Escherichia coli 6.0172]
 gi|408574373|gb|EKK50150.1| arginine--tRNA ligase [Escherichia coli 8.0586]
 gi|408582490|gb|EKK57705.1| arginine--tRNA ligase [Escherichia coli 10.0833]
 gi|408583156|gb|EKK58334.1| arginine--tRNA ligase [Escherichia coli 8.2524]
 gi|408594738|gb|EKK69019.1| arginine--tRNA ligase [Escherichia coli 10.0869]
 gi|408598302|gb|EKK72261.1| arginine--tRNA ligase [Escherichia coli 88.0221]
 gi|408602338|gb|EKK76059.1| arginine--tRNA ligase [Escherichia coli 8.0416]
 gi|408613692|gb|EKK86979.1| arginine--tRNA ligase [Escherichia coli 10.0821]
 gi|427207730|gb|EKV77898.1| arginine--tRNA ligase [Escherichia coli 88.1042]
 gi|427209391|gb|EKV79430.1| arginine--tRNA ligase [Escherichia coli 89.0511]
 gi|427210665|gb|EKV80520.1| arginine--tRNA ligase [Escherichia coli 88.1467]
 gi|427226380|gb|EKV94970.1| arginine--tRNA ligase [Escherichia coli 90.2281]
 gi|427226697|gb|EKV95286.1| arginine--tRNA ligase [Escherichia coli 90.0091]
 gi|427229555|gb|EKV97869.1| arginine--tRNA ligase [Escherichia coli 90.0039]
 gi|427244862|gb|EKW12171.1| arginine--tRNA ligase [Escherichia coli 93.0056]
 gi|427245426|gb|EKW12710.1| arginine--tRNA ligase [Escherichia coli 93.0055]
 gi|427247719|gb|EKW14771.1| arginine--tRNA ligase [Escherichia coli 94.0618]
 gi|427263540|gb|EKW29298.1| arginine--tRNA ligase [Escherichia coli 95.0943]
 gi|427264120|gb|EKW29811.1| arginine--tRNA ligase [Escherichia coli 95.0183]
 gi|427266363|gb|EKW31812.1| arginine--tRNA ligase [Escherichia coli 95.1288]
 gi|427278651|gb|EKW43107.1| arginine--tRNA ligase [Escherichia coli 96.0428]
 gi|427282586|gb|EKW46831.1| arginine--tRNA ligase [Escherichia coli 96.0427]
 gi|427285163|gb|EKW49166.1| arginine--tRNA ligase [Escherichia coli 96.0939]
 gi|427294400|gb|EKW57585.1| arginine--tRNA ligase [Escherichia coli 96.0932]
 gi|427301498|gb|EKW64360.1| arginine--tRNA ligase [Escherichia coli 96.0107]
 gi|427301848|gb|EKW64702.1| arginine--tRNA ligase [Escherichia coli 97.0003]
 gi|427315572|gb|EKW77564.1| arginine--tRNA ligase [Escherichia coli 97.1742]
 gi|427317855|gb|EKW79746.1| arginine--tRNA ligase [Escherichia coli 97.0007]
 gi|427322460|gb|EKW84093.1| arginine--tRNA ligase [Escherichia coli 99.0672]
 gi|427330193|gb|EKW91471.1| arginine--tRNA ligase [Escherichia coli 99.0678]
 gi|427330589|gb|EKW91859.1| arginine--tRNA ligase [Escherichia coli 99.0713]
 gi|429255269|gb|EKY39604.1| arginine--tRNA ligase [Escherichia coli 96.0109]
 gi|429257041|gb|EKY41144.1| arginine--tRNA ligase [Escherichia coli 97.0010]
 gi|444539608|gb|ELV19332.1| arginine--tRNA ligase [Escherichia coli 99.0814]
 gi|444542840|gb|ELV22176.1| arginine--tRNA ligase [Escherichia coli 09BKT078844]
 gi|444548682|gb|ELV27050.1| arginine--tRNA ligase [Escherichia coli 99.0815]
 gi|444559765|gb|ELV36966.1| arginine--tRNA ligase [Escherichia coli 99.0839]
 gi|444561474|gb|ELV38587.1| arginine--tRNA ligase [Escherichia coli 99.0816]
 gi|444565929|gb|ELV42772.1| arginine--tRNA ligase [Escherichia coli 99.0848]
 gi|444575370|gb|ELV51612.1| arginine--tRNA ligase [Escherichia coli 99.1753]
 gi|444579603|gb|ELV55589.1| arginine--tRNA ligase [Escherichia coli 99.1775]
 gi|444581755|gb|ELV57593.1| arginine--tRNA ligase [Escherichia coli 99.1793]
 gi|444595353|gb|ELV70457.1| arginine--tRNA ligase [Escherichia coli PA11]
 gi|444595533|gb|ELV70635.1| arginine--tRNA ligase [Escherichia coli ATCC 700728]
 gi|444609180|gb|ELV83639.1| arginine--tRNA ligase [Escherichia coli PA19]
 gi|444609562|gb|ELV84020.1| arginine--tRNA ligase [Escherichia coli PA13]
 gi|444617452|gb|ELV91568.1| arginine--tRNA ligase [Escherichia coli PA2]
 gi|444626118|gb|ELV99916.1| arginine--tRNA ligase [Escherichia coli PA48]
 gi|444626361|gb|ELW00157.1| arginine--tRNA ligase [Escherichia coli PA47]
 gi|444631922|gb|ELW05505.1| arginine--tRNA ligase [Escherichia coli PA8]
 gi|444641213|gb|ELW14452.1| arginine--tRNA ligase [Escherichia coli 7.1982]
 gi|444644148|gb|ELW17272.1| arginine--tRNA ligase [Escherichia coli 99.1781]
 gi|444647421|gb|ELW20395.1| arginine--tRNA ligase [Escherichia coli 99.1762]
 gi|444656033|gb|ELW28569.1| arginine--tRNA ligase [Escherichia coli PA35]
 gi|444662848|gb|ELW35100.1| arginine--tRNA ligase [Escherichia coli 3.4880]
 gi|444667657|gb|ELW39691.1| arginine--tRNA ligase [Escherichia coli 95.0083]
 gi|444671043|gb|ELW42882.1| arginine--tRNA ligase [Escherichia coli 99.0670]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTHDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTHD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|422008556|ref|ZP_16355540.1| arginyl-tRNA ligase [Providencia rettgeri Dmel1]
 gi|414095029|gb|EKT56692.1| arginyl-tRNA ligase [Providencia rettgeri Dmel1]
          Length = 576

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 167/523 (31%), Positives = 260/523 (49%), Gaps = 66/523 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAILSDKISAAMLAA----GAPEGSDALVRQSAKAQFGDYQANGVMGAAKKMG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+        +L  +  L  +  K+E+A PGF+N+FL   +  + +++ + + 
Sbjct: 53  -MAPRQLAE--------QLVNHLDLEGIASKVEIAGPGFINIFLEPTWVEKHVEEALASQ 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+ P    K   +++D+S+PN+AK+MHVGHLRSTIIGD  +R  E++GH V+R NHVG
Sbjct: 104 RLGIAPV---KSETIVIDYSAPNVAKQMHVGHLRSTIIGDAAARTQEFIGHKVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       +ADL+ FY+E+KK +DEDE F  RA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KVQNEDATDMALADLEEFYREAKKHYDEDEEFAVRARGYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   ++ W  + D++ +  Q+ Y RLNVTLTE    GES Y   +  +V  L+ KGL  
Sbjct: 220 GDEYCRQMWRKLVDITMQQNQETYRRLNVTLTEDDVMGESLYNSMLPGIVADLKAKGLAV 279

Query: 499 LDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
             +G  +++ ++   +   PM ++  K DGGF Y T+D+A  + R E   AD  +Y  D 
Sbjct: 280 ESEGATVVFLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIACAKYRYETLHADRSLYYIDS 339

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 613
            Q  H  L++  TI+     R   Y+   +   +H+      FGM++      F      
Sbjct: 340 RQ--HQHLMQAWTIV-----RKAGYIPESMALEHHM------FGMMLGKDGKPFKTRTGG 386

Query: 614 SPPIADL--------QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDV 665
           +  ++DL        QA  +E      EDE+        + A++              D+
Sbjct: 387 TVRLSDLLDEAVERAQALIREKNPDMPEDELLNVANVVGIGAVK------------YADL 434

Query: 666 SR-RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLS 707
           S+ R    I+D  N+   E   + Y ++    V  + KK NL+
Sbjct: 435 SKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKKANLT 477



 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 190/368 (51%), Gaps = 58/368 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R  E++GH V+R NHVGDWGTQFGMLIA+L+ K  +       +ADL+ FY
Sbjct: 135 STIIGDAAARTQEFIGHKVIRANHVGDWGTQFGMLIAYLE-KVQNEDATDMALADLEEFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F  RA   VV LQ  D   ++ W  + D++ +  Q+ Y RLNVTLTE 
Sbjct: 194 REAKKHYDEDEEFAVRARGYVVKLQSGDEYCRQMWRKLVDITMQQNQETYRRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNSMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIVQKKDGGFLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRSLYYIDSRQHQHLMQAWTIVRKAGYI-PESMALEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+LS+LLDE + R+   +++KN   ++   EL      V  G +K
Sbjct: 373 LGKDGKPFKTRTGGTVRLSDLLDEAVERAQALIREKN--PDMPEDELLNVANVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP----DP 870
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ASI + A +   D   P    DP
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKKANLTHADLTLPISLQDP 490

Query: 871 SQSEVEDR 878
            +  +  R
Sbjct: 491 REIALATR 498



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 108/191 (56%), Gaps = 11/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+   +++KN   ++   EL      V  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  AVERAQALIREKN--PDMPEDELLNVANVVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ASI + A +   DL     + P+SL+  +E ALA  LL+  + ++ V
Sbjct: 455  NTAPYMQYAYTRVASIFKKANLTHADL-----TLPISLQDPREIALATRLLQFEETILTV 509

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             RD   H +C YLY+++  FS FY++C  +  D E + ++    RL LA  T + +K   
Sbjct: 510  ARDGTPHVMCAYLYELAGLFSGFYEHCPILSADDEAQRQS----RLKLAALTQRTLKTGL 565

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 566  DTLGIETVERM 576



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAILSDKISAAMLAA----GAPEGSDALVRQSAKAQFGDYQANGVMGAAKKMG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+        +L  +  L  +  K+E A PGF+N+FL   +  + +++ + + 
Sbjct: 53  -MAPRQLAE--------QLVNHLDLEGIASKVEIAGPGFINIFLEPTWVEKHVEEALASQ 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             G+ P    K   +++D+S+PN+A++
Sbjct: 104 RLGIAPV---KSETIVIDYSAPNVAKQ 127


>gi|168762327|ref|ZP_02787334.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|217328684|ref|ZP_03444765.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|189367334|gb|EDU85750.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|217318031|gb|EEC26458.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDHLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTHDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTHD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDHLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|385788609|ref|YP_005819718.1| arginyl-tRNA synthetase [Erwinia sp. Ejp617]
 gi|310767881|gb|ADP12831.1| arginyl-tRNA synthetase [Erwinia sp. Ejp617]
          Length = 576

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 214/373 (57%), Gaps = 47/373 (12%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K         N     + +A  V  +L     L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGIMAVAK---------NLGMPPRQLAEKVLEQL----DLSGIAHKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII------VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL+  +   QI  ++      ++ V+P T      V++D+S+PN+AKEMHVGH+RS
Sbjct: 82  FINIFLAPQWLSAQIDSVLRAPKLGISPVEPKT------VVIDYSAPNVAKEMHVGHVRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD  +R L +LGH V+R NHVGDWGTQFGMLIA L+ +  ++  ++  +ADL+AFY+
Sbjct: 136 TIIGDAAARTLAFLGHKVIRANHVGDWGTQFGMLIAFLEKQQNEH-QETLALADLEAFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-- 474
           E+K+ +DED  F +RA   VV LQ  D   +K W+ + D++    Q IYDR+NVTL    
Sbjct: 195 EAKRTYDEDPAFAERARGYVVKLQGGDEYCRKMWKQLVDITMTQNQLIYDRMNVTLARDD 254

Query: 475 -RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   +  +V  L+ KGL    DG  +++ +   ++   PM ++  K DGG+ Y 
Sbjct: 255 VMGESLYNDMLPGIVADLKAKGLAVESDGATVVFLDEYKNKDGEPMGVIVQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E  KAD ++Y  D  Q  H  L++  TI+     R   Y+  ++   +H
Sbjct: 315 TTDIACAKYRYETLKADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYVPENIPLEHH 367

Query: 589 VGDWGTQFGMLIA 601
           +      FGM++ 
Sbjct: 368 M------FGMMLG 374



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 188/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R L +LGH V+R NHVGDWGTQFGMLIA L+ +  ++  ++  +ADL+AFY
Sbjct: 135 STIIGDAAARTLAFLGHKVIRANHVGDWGTQFGMLIAFLEKQQNEH-QETLALADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K+ +DED  F +RA   VV LQ  D   +K W+ + D++    Q IYDR+NVTL   
Sbjct: 194 REAKRTYDEDPAFAERARGYVVKLQGGDEYCRKMWKQLVDITMTQNQLIYDRMNVTLARD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVADLKAKGLAVESDGATVVFLDEYKNKDGEPMGVIVQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLKADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PENIPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T+KLS+LLDE + R+   + +KN   ++   EL      V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTIKLSDLLDEAIDRATRLVAEKN--PDMPAGELKALANIVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI++E
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIDAE 479



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 102/178 (57%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL      V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPAGELKALANIVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AGI++E     A S    +  ++E ALA  LL+ ++ +  V RD   H +C YL
Sbjct: 468  LSVFRKAGIDAE-----AVSGTTRIIEDREAALAVRLLQFDETITQVARDGMPHVMCAYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  + E   ++    RL LA  TAK +K+  D L I TV +M
Sbjct: 523  YDLAGLFSGFYEHCPILNAEDEATKQS----RLRLALLTAKTLKQGLDTLGIATVERM 576



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 25/112 (22%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K         N     + +A  V  +L     L+ +  K+E A PG
Sbjct: 35  QFGDYQANGIMAVAK---------NLGMPPRQLAEKVLEQL----DLSGIAHKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII------VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL+  +   Q+  ++      ++ V+P T      V++D+S+PN+A++
Sbjct: 82  FINIFLAPQWLSAQIDSVLRAPKLGISPVEPKT------VVIDYSAPNVAKE 127


>gi|218695442|ref|YP_002403109.1| arginyl-tRNA synthetase [Escherichia coli 55989]
 gi|407469746|ref|YP_006783811.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 2009EL-2071]
 gi|407481591|ref|YP_006778740.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 2011C-3493]
 gi|410482140|ref|YP_006769686.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 2009EL-2050]
 gi|417866979|ref|ZP_12512018.1| argS [Escherichia coli O104:H4 str. C227-11]
 gi|422987983|ref|ZP_16978756.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. C227-11]
 gi|422994874|ref|ZP_16985638.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. C236-11]
 gi|422999952|ref|ZP_16990706.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 09-7901]
 gi|423003620|ref|ZP_16994366.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 04-8351]
 gi|423010191|ref|ZP_17000925.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-3677]
 gi|423019417|ref|ZP_17010126.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4404]
 gi|423024583|ref|ZP_17015280.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4522]
 gi|423030404|ref|ZP_17021092.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4623]
 gi|423038232|ref|ZP_17028906.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4632 C1]
 gi|423043353|ref|ZP_17034020.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4632 C2]
 gi|423045080|ref|ZP_17035740.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4632 C3]
 gi|423053618|ref|ZP_17042425.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4632 C4]
 gi|423060593|ref|ZP_17049389.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4632 C5]
 gi|429719456|ref|ZP_19254391.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-9450]
 gi|429724792|ref|ZP_19259659.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-9990]
 gi|429771343|ref|ZP_19303366.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02030]
 gi|429781273|ref|ZP_19313204.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02033-1]
 gi|429784923|ref|ZP_19316828.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02092]
 gi|429790904|ref|ZP_19322761.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02093]
 gi|429796727|ref|ZP_19328538.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02281]
 gi|429798329|ref|ZP_19330130.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02318]
 gi|429806842|ref|ZP_19338569.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02913]
 gi|429811675|ref|ZP_19343365.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-03439]
 gi|429817262|ref|ZP_19348903.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-04080]
 gi|429822473|ref|ZP_19354071.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-03943]
 gi|429907992|ref|ZP_19373956.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-9941]
 gi|429913861|ref|ZP_19379809.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-4984]
 gi|429918892|ref|ZP_19384824.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-5604]
 gi|429924713|ref|ZP_19390627.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-4986]
 gi|429928648|ref|ZP_19394550.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-4987]
 gi|429935188|ref|ZP_19401074.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-4988]
 gi|429940869|ref|ZP_19406743.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-5603]
 gi|429943549|ref|ZP_19409412.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-6006]
 gi|429951142|ref|ZP_19416988.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec12-0465]
 gi|429954457|ref|ZP_19420289.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec12-0466]
 gi|254782962|sp|B7L7S9.1|SYR_ECO55 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|218352174|emb|CAU97913.1| arginyl-tRNA synthetase [Escherichia coli 55989]
 gi|341920268|gb|EGT69876.1| argS [Escherichia coli O104:H4 str. C227-11]
 gi|354861709|gb|EHF22147.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. C236-11]
 gi|354866994|gb|EHF27416.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. C227-11]
 gi|354869067|gb|EHF29477.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 04-8351]
 gi|354872923|gb|EHF33300.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 09-7901]
 gi|354879674|gb|EHF40010.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-3677]
 gi|354890274|gb|EHF50516.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4404]
 gi|354894109|gb|EHF54306.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4522]
 gi|354895734|gb|EHF55913.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4632 C1]
 gi|354898265|gb|EHF58420.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4623]
 gi|354899910|gb|EHF60048.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4632 C2]
 gi|354913289|gb|EHF73283.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4632 C5]
 gi|354916716|gb|EHF76687.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4632 C3]
 gi|354919164|gb|EHF79115.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-4632 C4]
 gi|406777302|gb|AFS56726.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 2009EL-2050]
 gi|407053888|gb|AFS73939.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 2011C-3493]
 gi|407065781|gb|AFS86828.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 2009EL-2071]
 gi|429347302|gb|EKY84076.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02033-1]
 gi|429349700|gb|EKY86436.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02092]
 gi|429360826|gb|EKY97483.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02030]
 gi|429362257|gb|EKY98904.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02093]
 gi|429363577|gb|EKZ00210.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02281]
 gi|429365646|gb|EKZ02258.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02318]
 gi|429376501|gb|EKZ13029.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-02913]
 gi|429380543|gb|EKZ17032.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-03943]
 gi|429380989|gb|EKZ17477.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-03439]
 gi|429392764|gb|EKZ29163.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. 11-04080]
 gi|429406399|gb|EKZ42658.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-4984]
 gi|429408482|gb|EKZ44720.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-9990]
 gi|429411837|gb|EKZ48042.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-9450]
 gi|429420809|gb|EKZ56932.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-4987]
 gi|429422600|gb|EKZ58714.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-4986]
 gi|429424972|gb|EKZ61069.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-5603]
 gi|429430173|gb|EKZ66239.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-5604]
 gi|429433118|gb|EKZ69152.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-4988]
 gi|429446389|gb|EKZ82319.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-6006]
 gi|429447749|gb|EKZ83666.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec12-0465]
 gi|429452896|gb|EKZ88774.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec11-9941]
 gi|429457414|gb|EKZ93252.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. Ec12-0466]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   +V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANSVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   +V  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANSVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|56461560|ref|YP_156841.1| arginyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|81362378|sp|Q5QV46.1|SYR_IDILO RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|56180570|gb|AAV83292.1| Arginyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 580

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/399 (36%), Positives = 220/399 (55%), Gaps = 48/399 (12%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N A+ L K       K NP  +A++I + V            ++ K+++A PGF+
Sbjct: 41  GDFATNLALMLAK-----PAKSNPRQLAEAIVAAVPEN--------SLLSKMDIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL-----RVLVDFSSPNIAKEMHVGHLRSTII 359
           N  +S+    +Q+KD +   +   +LN  +      +++D+SSPN+AKEMHVGHLRS II
Sbjct: 88  NFTISQ----DQLKDQLTAMLNSDSLNVDVAEESKTIVIDYSSPNLAKEMHVGHLRSAII 143

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD +SR+ E+LGH V+R NHVGDWGTQFGML+A+++    D  +    +++L+ FYK +K
Sbjct: 144 GDAVSRVCEFLGHKVIRQNHVGDWGTQFGMLLAYMEA--LDNQSAEYELSNLETFYKAAK 201

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           +RFDE E F  RA Q VV LQ  D    K W    DVS    Q +YDRL V LT      
Sbjct: 202 QRFDESEEFADRARQLVVKLQSGDEYCLKLWNQFIDVSLSHCQDVYDRLGVKLTRDDVMA 261

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSD 531
           ES Y   +  ++ +L +KGLL  D G + ++     G++   +P+ + K  GG+ Y T+D
Sbjct: 262 ESAYNDKLPGVIEHLREKGLLTEDQGAQCVFLEEYKGKEGEPLPIIVQKKGGGYLYATTD 321

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           LAAI  R +E   D ++Y  D  Q +HF  +        T++R   ++  D ++LNH G 
Sbjct: 322 LAAIEYRQKELGGDHLMYFVDARQALHFDQIF-------TLARKAGFVEGD-IQLNHYG- 372

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           +GT  G      +D  P Y ++   +  L     E+++R
Sbjct: 373 FGTVMG------KDGKP-YKSRDGGVTKLADLLDEAERR 404



 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 193/366 (52%), Gaps = 57/366 (15%)

Query: 540 EEEKADWIVYVT-DLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 598
           EE K   I Y + +L + +H   L  S IIGD +SR+ E+LGH V+R NHVGDWGTQFGM
Sbjct: 115 EESKTIVIDYSSPNLAKEMHVGHLR-SAIIGDAVSRVCEFLGHKVIRQNHVGDWGTQFGM 173

Query: 599 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA 658
           L+A+++    D  +    +++L+ FYK +K+RFDE E F  RA Q VV LQ  D    K 
Sbjct: 174 LLAYMEA--LDNQSAEYELSNLETFYKAAKQRFDESEEFADRARQLVVKLQSGDEYCLKL 231

Query: 659 WEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGNLS-------- 707
           W    DVS    Q +YDRL V LT      ES Y   +  ++ +L +KG L+        
Sbjct: 232 WNQFIDVSLSHCQDVYDRLGVKLTRDDVMAESAYNDKLPGVIEHLREKGLLTEDQGAQCV 291

Query: 708 ------------------------------------LTKKLG---IVYVTDLGQGVHFRL 728
                                                 K+LG   ++Y  D  Q +HF  
Sbjct: 292 FLEEYKGKEGEPLPIIVQKKGGGYLYATTDLAAIEYRQKELGGDHLMYFVDARQALHFDQ 351

Query: 729 LEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLK 788
           +   A+KAG +  +  +++  GFG V+G+D K +K+R G   KL++LLDE  RR+L+ L+
Sbjct: 352 IFTLARKAGFVEGD-IQLNHYGFGTVMGKDGKPYKSRDGGVTKLADLLDEAERRALELLQ 410

Query: 789 DKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAY 848
            K   T+L+  +     + V    +KYADLS NR  DYVF ++ ML   GNTA YLLYA+
Sbjct: 411 QKT--TDLSEEQQKRVAEVVGISSVKYADLSKNRTSDYVFDWNHMLTFEGNTAPYLLYAF 468

Query: 849 TRIASI 854
           TR+ SI
Sbjct: 469 TRVNSI 474



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            RR+L+ L+ K   T+L+  +     + V    +KYADLS NR  DYVF ++ ML   GNT
Sbjct: 403  RRALELLQQKT--TDLSEEQQKRVAEVVGISSVKYADLSKNRTSDYVFDWNHMLTFEGNT 460

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYA+TR+ SI    G  + D     ++  + L  E+E ALA  L+R N+VL  V  
Sbjct: 461  APYLLYAFTRVNSIFDRLGDTAFD-----RNADIILSDERELALANQLVRFNEVLHQVQD 515

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H LC +L+D++  FS FY+ C  + ++ E     +   RL L+  TA V+K+  ++
Sbjct: 516  KAMPHFLCGFLFDLAGRFSSFYEACPILNQEDEA----LRNSRLKLSMLTANVLKQGLEL 571

Query: 1111 LNIRTVHKM 1119
            L I T+ KM
Sbjct: 572  LGIPTLEKM 580



 Score = 47.0 bits (110), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 22/109 (20%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N A+ L K       K NP  +A++I + V            ++ K++ A PGF+
Sbjct: 41  GDFATNLALMLAK-----PAKSNPRQLAEAIVAAVPEN--------SLLSKMDIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKL-----RVLVDFSSPNIARK 152
           N  +S+    +Q+KD +   +   +LN  +      +++D+SSPN+A++
Sbjct: 88  NFTISQ----DQLKDQLTAMLNSDSLNVDVAEESKTIVIDYSSPNLAKE 132


>gi|422371692|ref|ZP_16452067.1| arginyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|432898851|ref|ZP_20109543.1| arginyl-tRNA synthetase [Escherichia coli KTE192]
 gi|433028806|ref|ZP_20216667.1| arginyl-tRNA synthetase [Escherichia coli KTE109]
 gi|315296537|gb|EFU55834.1| arginyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|431426503|gb|ELH08547.1| arginyl-tRNA synthetase [Escherichia coli KTE192]
 gi|431543475|gb|ELI18456.1| arginyl-tRNA synthetase [Escherichia coli KTE109]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 143/389 (36%), Positives = 209/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E ++  + +      + +K  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVAMPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H+  
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHHM-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 369 ----FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +      + +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVAMPEKQTIVVDYSAPNVAKE 127


>gi|425162702|ref|ZP_18561641.1| arginine--tRNA ligase [Escherichia coli FDA506]
 gi|408082027|gb|EKH16019.1| arginine--tRNA ligase [Escherichia coli FDA506]
          Length = 563

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 21  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 67

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 68  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 124

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 125 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 183

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 184 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTHDDVMG 243

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 244 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 300

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 301 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 353

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 354 M------FGMMLGKDGKPFKTRAGGTVKLADL 379



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 121 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 179

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 180 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTHD 239

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 240 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 299

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 300 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 358

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 359 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 416

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 417 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 465



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 383  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 440

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 441  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 496

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 497  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 552

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 553  DTLGIETVERM 563



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 21  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 67

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 68  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 113


>gi|424932744|ref|ZP_18351116.1| Arginyl-tRNA synthetase (Arginine--tRNA ligase) [Klebsiella
           pneumoniae subsp. pneumoniae KpQ3]
 gi|407806931|gb|EKF78182.1| Arginyl-tRNA synthetase (Arginine--tRNA ligase) [Klebsiella
           pneumoniae subsp. pneumoniae KpQ3]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + +   + +   GV  P +     ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQVQT---IVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  226 bits (575), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 187/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL    + V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELENLAKVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R AGI+
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGID 477



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL    + V  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELENLAKVVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AGI+      A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAGIDEN----AMIDAPVVIAEDREAQLAARLLQFEETLSVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + +   + +   GV  P +     ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQVQT---IVVDYSAPNVAKE 127


>gi|419115083|ref|ZP_13660104.1| arginyl-tRNA synthetase [Escherichia coli DEC5A]
 gi|377961617|gb|EHV25084.1| arginyl-tRNA synthetase [Escherichia coli DEC5A]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELGKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELGKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|157161347|ref|YP_001458665.1| arginyl-tRNA synthetase [Escherichia coli HS]
 gi|166987302|sp|A8A178.1|SYR_ECOHS RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|157067027|gb|ABV06282.1| arginyl-tRNA synthetase [Escherichia coli HS]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  219 bits (558), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 185/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++    L +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADGLEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++    L +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADGLEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|422014405|ref|ZP_16361017.1| arginyl-tRNA ligase [Providencia burhodogranariea DSM 19968]
 gi|414101057|gb|EKT62662.1| arginyl-tRNA ligase [Providencia burhodogranariea DSM 19968]
          Length = 576

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/408 (35%), Positives = 222/408 (54%), Gaps = 45/408 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+Q A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAILSDKISAAMQAA----GAPEGSDALVRQSAKAQFGDYQANGVMGAAKKMG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
             NP  +A+ I S +         L  +  K+E+A PGF+N+FL   +   Q++  +V+ 
Sbjct: 53  -INPRQLAEHIVSHI--------ELEGIASKVEIAGPGFINIFLEPSWIIMQVEQALVSE 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+ P    K   +++D+S+PN+AK+MHVGHLRSTIIGD  +R  E++GH V+R NHVG
Sbjct: 104 RLGLSPV---KPETIVIDYSAPNVAKQMHVGHLRSTIIGDAAARTQEFIGHKVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       ++DL+ FY+E+K+ +D D  F +RA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNESASDMALSDLEEFYREAKQHYDADADFAERARGYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   +K W  + D++ +  Q+ Y RLNVTLTE    GES Y   +  +V  L+ KGL  
Sbjct: 220 GDEYCRKMWRKLVDITMQQNQETYHRLNVTLTEDDVMGESLYNSMLAGIVADLKAKGLAV 279

Query: 499 LDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
             +G  +++ ++   +   PM ++  K DGGF Y T+D+A  + R E   AD ++Y  D 
Sbjct: 280 ESEGATVVYLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIACAKYRHEVLHADRVLYYIDS 339

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
            Q  H  L++  TI+     R   Y+   +   +H+      FGM++ 
Sbjct: 340 RQ--HQHLMQAWTIV-----RKAGYIPESMTLEHHM------FGMMLG 374



 Score =  219 bits (557), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 191/368 (51%), Gaps = 58/368 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R  E++GH V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+ FY
Sbjct: 135 STIIGDAAARTQEFIGHKVIRANHVGDWGTQFGMLIAYLE-KMQNESASDMALSDLEEFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K+ +D D  F +RA   VV LQ  D   +K W  + D++ +  Q+ Y RLNVTLTE 
Sbjct: 194 REAKQHYDADADFAERARGYVVKLQSGDEYCRKMWRKLVDITMQQNQETYHRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNSMLAGIVADLKAKGLAVESEGATVVYLDEFKNKEGEPMGVIVQKKDGGFLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRHEVLHADRVLYYIDSRQHQHLMQAWTIVRKAGYI-PESMTLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+LS+LLDE + R+   ++ KN   E++  EL+     V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVRLSDLLDEAIERAKVLIRTKN--PEMSEDELNNVANVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP----DP 870
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + A +   D   P    DP
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKKANVTQADLTLPLVLQDP 490

Query: 871 SQSEVEDR 878
            +  +  R
Sbjct: 491 REIALATR 498



 Score =  132 bits (333), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 105/180 (58%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ E++  EL+     V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 406  RTKNPEMSEDELNNVANVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI + A +   DL     + P+ L+  +E ALA  L++  + +++V RD   H +C 
Sbjct: 466  RVASIFKKANVTQADL-----TLPLVLQDPREIALATRLMQFEETILMVARDGTPHVMCA 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY++C  +  + E + ++    RL LA  T K +K   D L I TV +M
Sbjct: 521  YLYDLAGLFSSFYEHCPILSAEDEEQRQS----RLKLALLTQKTLKIGLDTLGIETVERM 576



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+Q A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAILSDKISAAMQAA----GAPEGSDALVRQSAKAQFGDYQANGVMGAAKKMG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
             NP  +A+ I S +         L  +  K+E A PGF+N+FL   +   Q++  +V+ 
Sbjct: 53  -INPRQLAEHIVSHI--------ELEGIASKVEIAGPGFINIFLEPSWIIMQVEQALVSE 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             G+ P    K   +++D+S+PN+A++
Sbjct: 104 RLGLSPV---KPETIVIDYSAPNVAKQ 127


>gi|110641994|ref|YP_669724.1| arginyl-tRNA synthetase [Escherichia coli 536]
 gi|191173026|ref|ZP_03034560.1| arginyl-tRNA synthetase [Escherichia coli F11]
 gi|300982204|ref|ZP_07175916.1| arginyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|422375129|ref|ZP_16455396.1| arginyl-tRNA synthetase [Escherichia coli MS 60-1]
 gi|432471173|ref|ZP_19713220.1| arginyl-tRNA synthetase [Escherichia coli KTE206]
 gi|432713584|ref|ZP_19948625.1| arginyl-tRNA synthetase [Escherichia coli KTE8]
 gi|433077954|ref|ZP_20264505.1| arginyl-tRNA synthetase [Escherichia coli KTE131]
 gi|123147998|sp|Q0TGV6.1|SYR_ECOL5 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|110343586|gb|ABG69823.1| arginyl-tRNA synthetase [Escherichia coli 536]
 gi|190906737|gb|EDV66342.1| arginyl-tRNA synthetase [Escherichia coli F11]
 gi|300307274|gb|EFJ61794.1| arginyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|324013521|gb|EGB82740.1| arginyl-tRNA synthetase [Escherichia coli MS 60-1]
 gi|430998391|gb|ELD14632.1| arginyl-tRNA synthetase [Escherichia coli KTE206]
 gi|431257387|gb|ELF50311.1| arginyl-tRNA synthetase [Escherichia coli KTE8]
 gi|431597625|gb|ELI67531.1| arginyl-tRNA synthetase [Escherichia coli KTE131]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 143/389 (36%), Positives = 209/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E ++  + +      + +K  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVAMPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H+  
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHHM-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 369 ----FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +      + +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVAMPEKQTIVVDYSAPNVAKE 127


>gi|419863950|ref|ZP_14386455.1| arginyl-tRNA synthetase [Escherichia coli O103:H25 str. CVM9340]
 gi|388341519|gb|EIL07629.1| arginyl-tRNA synthetase [Escherichia coli O103:H25 str. CVM9340]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIRKDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|331647473|ref|ZP_08348565.1| arginine--tRNA ligase [Escherichia coli M605]
 gi|417662468|ref|ZP_12312049.1| arginyl-tRNA synthetase [Escherichia coli AA86]
 gi|432894692|ref|ZP_20106513.1| arginyl-tRNA synthetase [Escherichia coli KTE165]
 gi|330911686|gb|EGH40196.1| arginyl-tRNA synthetase [Escherichia coli AA86]
 gi|331043197|gb|EGI15335.1| arginine--tRNA ligase [Escherichia coli M605]
 gi|431422605|gb|ELH04797.1| arginyl-tRNA synthetase [Escherichia coli KTE165]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILNAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|431928798|ref|YP_007241832.1| arginyl-tRNA synthetase [Pseudomonas stutzeri RCH2]
 gi|431827085|gb|AGA88202.1| arginyl-tRNA synthetase [Pseudomonas stutzeri RCH2]
          Length = 579

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 153/411 (37%), Positives = 221/411 (53%), Gaps = 65/411 (15%)

Query: 204 RMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           R++    L D  T A+QV             +T +K     GDF  N A+ L K    K 
Sbjct: 15  RLTSEGVLPDGLTPAIQVE------------NTKDK---SHGDFASNIALMLAKPAGLK- 58

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
               P D+A+ +       +A  P  A+V  K+E+A PGF+N F        Q  D +  
Sbjct: 59  ----PRDLAEKL-------IAALPQDAQV-SKVEIAGPGFLNFF--------QNSDALAG 98

Query: 324 GVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDV 374
            ++    + +L         RV+VD SSPN+AKEMHVGHLRSTIIGD + R+LE+LG +V
Sbjct: 99  RLETALSDAQLAVRKASATQRVVVDLSSPNLAKEMHVGHLRSTIIGDAVGRVLEFLGDEV 158

Query: 375 VRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQ 434
           +R NHVGDWGTQFGML+A+L++K          +ADL+ FY+ +K+RFDE   F  RA +
Sbjct: 159 IRQNHVGDWGTQFGMLLAYLEEKPA---AAESELADLEQFYRAAKQRFDESAEFADRARE 215

Query: 435 CVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYL 491
            VV LQ  D      W    D+S    QK+YDRLNV LT    +GES Y   +  +V  L
Sbjct: 216 LVVKLQAGDAQCLSLWTRFNDISLSHCQKLYDRLNVKLTPADVKGESAYNSELLGIVDAL 275

Query: 492 EKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADW 546
            +KGLL  D+G + ++       +   +P+ + K+ GG+ Y T+DLAA+R R +   AD 
Sbjct: 276 REKGLLTEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLYATTDLAAMRYRSQVLHADR 335

Query: 547 IVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            +Y  D  Q +HF++  E       ++R   ++ H+ ++L H+G +GT  G
Sbjct: 336 ALYFVDQRQALHFQMAFE-------VARRAGFV-HESMQLEHMG-FGTMNG 377



 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/345 (39%), Positives = 188/345 (54%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R+LE+LG +V+R NHVGDWGTQFGML+A+L++K          +ADL+ FY
Sbjct: 140 STIIGDAVGRVLEFLGDEVIRQNHVGDWGTQFGMLLAYLEEKPA---AAESELADLEQFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA + VV LQ  D      W    D+S    QK+YDRLNV LT  
Sbjct: 197 RAAKQRFDESAEFADRARELVVKLQAGDAQCLSLWTRFNDISLSHCQKLYDRLNVKLTPA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   +  +V  L +KG L+                       + +K G     
Sbjct: 257 DVKGESAYNSELLGIVDALREKGLLTEDNGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q +HF++  E A++AG ++ +  +++ +GFG +
Sbjct: 317 ATTDLAAMRYRSQVLHADRALYFVDQRQALHFQMAFEVARRAGFVHES-MQLEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+   +K KN   EL   EL +  +AV    +K
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLDEAEQRAYALVKGKN--PELDEAELRQIARAVGISAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML   GNTA YLLYAYTR+AS+ R  G
Sbjct: 434 YADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYTRVASVFRKLG 478



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 95/167 (56%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   EL +  +AV    +KYADLS +R  DY F+F+ ML   GNTA YLLYAYT
Sbjct: 409  KGKNPELDEAELRQIARAVGISAVKYADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+ R  G   ++      +  + LE E+E ALA  L +  +VL  V      H LC 
Sbjct: 469  RVASVFRKLGKGIDE-----STGRIRLEAEQELALAAKLAQFGEVLNSVGEKGEPHLLCA 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY++C  +  + E + ++    RL LA  T K +K+
Sbjct: 524  YLYDLAGLFSSFYEHCPILSAEQEDQKQS----RLRLAALTGKTLKQ 566


>gi|26248143|ref|NP_754183.1| arginyl-tRNA synthetase [Escherichia coli CFT073]
 gi|170019779|ref|YP_001724733.1| arginyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|194439027|ref|ZP_03071110.1| arginyl-tRNA synthetase [Escherichia coli 101-1]
 gi|209919302|ref|YP_002293386.1| arginyl-tRNA synthetase [Escherichia coli SE11]
 gi|222156620|ref|YP_002556759.1| Arginyl-tRNA synthetase [Escherichia coli LF82]
 gi|227885696|ref|ZP_04003501.1| arginyl-tRNA synthetase [Escherichia coli 83972]
 gi|293446263|ref|ZP_06662685.1| arginyl-tRNA synthetase [Escherichia coli B088]
 gi|300994045|ref|ZP_07180664.1| arginyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|301050768|ref|ZP_07197626.1| arginyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|306814294|ref|ZP_07448460.1| arginyl-tRNA synthetase [Escherichia coli NC101]
 gi|312967079|ref|ZP_07781297.1| arginyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|331668572|ref|ZP_08369420.1| arginine--tRNA ligase [Escherichia coli TA271]
 gi|331677761|ref|ZP_08378436.1| arginine--tRNA ligase [Escherichia coli H591]
 gi|386614433|ref|YP_006134099.1| arginyl-tRNA synthetase ArgS [Escherichia coli UMNK88]
 gi|386619462|ref|YP_006139042.1| arginyl-tRNA synthetase [Escherichia coli NA114]
 gi|386629579|ref|YP_006149299.1| arginyl-tRNA synthetase [Escherichia coli str. 'clone D i2']
 gi|386634499|ref|YP_006154218.1| arginyl-tRNA synthetase [Escherichia coli str. 'clone D i14']
 gi|386639403|ref|YP_006106201.1| arginine tRNA synthetase [Escherichia coli ABU 83972]
 gi|387617215|ref|YP_006120237.1| arginyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|387829789|ref|YP_003349726.1| arginyl-tRNA synthetase [Escherichia coli SE15]
 gi|415826100|ref|ZP_11513375.1| arginyl-tRNA synthetase [Escherichia coli OK1357]
 gi|415842498|ref|ZP_11523145.1| arginyl-tRNA synthetase [Escherichia coli RN587/1]
 gi|417133582|ref|ZP_11978367.1| arginine--tRNA ligase [Escherichia coli 5.0588]
 gi|417138119|ref|ZP_11981852.1| arginine--tRNA ligase [Escherichia coli 97.0259]
 gi|417149883|ref|ZP_11989801.1| arginine--tRNA ligase [Escherichia coli 1.2264]
 gi|417154243|ref|ZP_11992372.1| arginine--tRNA ligase [Escherichia coli 96.0497]
 gi|417222195|ref|ZP_12025635.1| arginine--tRNA ligase [Escherichia coli 96.154]
 gi|417247702|ref|ZP_12040458.1| arginine--tRNA ligase [Escherichia coli 9.0111]
 gi|417266053|ref|ZP_12053422.1| arginine--tRNA ligase [Escherichia coli 3.3884]
 gi|417283217|ref|ZP_12070514.1| arginine--tRNA ligase [Escherichia coli 3003]
 gi|417286849|ref|ZP_12074136.1| arginine--tRNA ligase [Escherichia coli TW07793]
 gi|417308348|ref|ZP_12095201.1| Arginyl-tRNA synthetase [Escherichia coli PCN033]
 gi|417581405|ref|ZP_12232207.1| arginyl-tRNA synthetase [Escherichia coli STEC_B2F1]
 gi|417602475|ref|ZP_12253045.1| arginyl-tRNA synthetase [Escherichia coli STEC_94C]
 gi|417629053|ref|ZP_12279293.1| arginyl-tRNA synthetase [Escherichia coli STEC_MHI813]
 gi|417667320|ref|ZP_12316865.1| arginyl-tRNA synthetase [Escherichia coli STEC_O31]
 gi|417755923|ref|ZP_12404007.1| arginyl-tRNA synthetase [Escherichia coli DEC2B]
 gi|418044070|ref|ZP_12682219.1| arginyl-tRNA synthetase [Escherichia coli W26]
 gi|418997094|ref|ZP_13544694.1| arginyl-tRNA synthetase [Escherichia coli DEC1A]
 gi|419002337|ref|ZP_13549873.1| arginyl-tRNA synthetase [Escherichia coli DEC1B]
 gi|419007931|ref|ZP_13555371.1| arginyl-tRNA synthetase [Escherichia coli DEC1C]
 gi|419013713|ref|ZP_13561068.1| arginyl-tRNA synthetase [Escherichia coli DEC1D]
 gi|419018542|ref|ZP_13565853.1| arginyl-tRNA synthetase [Escherichia coli DEC1E]
 gi|419024184|ref|ZP_13571415.1| arginyl-tRNA synthetase [Escherichia coli DEC2A]
 gi|419029230|ref|ZP_13576402.1| arginyl-tRNA synthetase [Escherichia coli DEC2C]
 gi|419034507|ref|ZP_13581598.1| arginyl-tRNA synthetase [Escherichia coli DEC2D]
 gi|419039829|ref|ZP_13586870.1| arginyl-tRNA synthetase [Escherichia coli DEC2E]
 gi|419159448|ref|ZP_13703957.1| arginyl-tRNA synthetase [Escherichia coli DEC6D]
 gi|419164666|ref|ZP_13709123.1| arginyl-tRNA synthetase [Escherichia coli DEC6E]
 gi|419805763|ref|ZP_14330890.1| arginyl-tRNA synthetase [Escherichia coli AI27]
 gi|419914094|ref|ZP_14432499.1| arginyl-tRNA synthetase [Escherichia coli KD1]
 gi|422354028|ref|ZP_16434775.1| arginyl-tRNA synthetase [Escherichia coli MS 117-3]
 gi|422366990|ref|ZP_16447447.1| arginyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|422790876|ref|ZP_16843580.1| arginyl-tRNA synthetase [Escherichia coli TA007]
 gi|422835837|ref|ZP_16883889.1| arginyl-tRNA synthetase [Escherichia coli E101]
 gi|422973338|ref|ZP_16975722.1| arginyl-tRNA synthetase [Escherichia coli TA124]
 gi|423705864|ref|ZP_17680247.1| arginyl-tRNA synthetase [Escherichia coli B799]
 gi|425278124|ref|ZP_18669388.1| arginine--tRNA ligase [Escherichia coli ARS4.2123]
 gi|425300646|ref|ZP_18690590.1| arginine--tRNA ligase [Escherichia coli 07798]
 gi|425305426|ref|ZP_18695168.1| arginine--tRNA ligase [Escherichia coli N1]
 gi|432381541|ref|ZP_19624486.1| arginyl-tRNA synthetase [Escherichia coli KTE15]
 gi|432387357|ref|ZP_19630247.1| arginyl-tRNA synthetase [Escherichia coli KTE16]
 gi|432392349|ref|ZP_19635186.1| arginyl-tRNA synthetase [Escherichia coli KTE21]
 gi|432412090|ref|ZP_19654756.1| arginyl-tRNA synthetase [Escherichia coli KTE39]
 gi|432422138|ref|ZP_19664686.1| arginyl-tRNA synthetase [Escherichia coli KTE178]
 gi|432432085|ref|ZP_19674517.1| arginyl-tRNA synthetase [Escherichia coli KTE187]
 gi|432435957|ref|ZP_19678350.1| arginyl-tRNA synthetase [Escherichia coli KTE188]
 gi|432449971|ref|ZP_19692239.1| arginyl-tRNA synthetase [Escherichia coli KTE193]
 gi|432456902|ref|ZP_19699089.1| arginyl-tRNA synthetase [Escherichia coli KTE201]
 gi|432481218|ref|ZP_19723176.1| arginyl-tRNA synthetase [Escherichia coli KTE210]
 gi|432485633|ref|ZP_19727549.1| arginyl-tRNA synthetase [Escherichia coli KTE212]
 gi|432495935|ref|ZP_19737734.1| arginyl-tRNA synthetase [Escherichia coli KTE214]
 gi|432500230|ref|ZP_19741990.1| arginyl-tRNA synthetase [Escherichia coli KTE216]
 gi|432504602|ref|ZP_19746332.1| arginyl-tRNA synthetase [Escherichia coli KTE220]
 gi|432514108|ref|ZP_19751334.1| arginyl-tRNA synthetase [Escherichia coli KTE224]
 gi|432523976|ref|ZP_19761108.1| arginyl-tRNA synthetase [Escherichia coli KTE230]
 gi|432531263|ref|ZP_19768292.1| arginyl-tRNA synthetase [Escherichia coli KTE233]
 gi|432553901|ref|ZP_19790627.1| arginyl-tRNA synthetase [Escherichia coli KTE47]
 gi|432558957|ref|ZP_19795635.1| arginyl-tRNA synthetase [Escherichia coli KTE49]
 gi|432568869|ref|ZP_19805387.1| arginyl-tRNA synthetase [Escherichia coli KTE53]
 gi|432593091|ref|ZP_19829409.1| arginyl-tRNA synthetase [Escherichia coli KTE60]
 gi|432607698|ref|ZP_19843887.1| arginyl-tRNA synthetase [Escherichia coli KTE67]
 gi|432611610|ref|ZP_19847773.1| arginyl-tRNA synthetase [Escherichia coli KTE72]
 gi|432646374|ref|ZP_19882164.1| arginyl-tRNA synthetase [Escherichia coli KTE86]
 gi|432651311|ref|ZP_19887068.1| arginyl-tRNA synthetase [Escherichia coli KTE87]
 gi|432655952|ref|ZP_19891658.1| arginyl-tRNA synthetase [Escherichia coli KTE93]
 gi|432670958|ref|ZP_19906489.1| arginyl-tRNA synthetase [Escherichia coli KTE119]
 gi|432694621|ref|ZP_19929828.1| arginyl-tRNA synthetase [Escherichia coli KTE162]
 gi|432699228|ref|ZP_19934386.1| arginyl-tRNA synthetase [Escherichia coli KTE169]
 gi|432710783|ref|ZP_19945845.1| arginyl-tRNA synthetase [Escherichia coli KTE6]
 gi|432723293|ref|ZP_19958213.1| arginyl-tRNA synthetase [Escherichia coli KTE17]
 gi|432727880|ref|ZP_19962759.1| arginyl-tRNA synthetase [Escherichia coli KTE18]
 gi|432741571|ref|ZP_19976290.1| arginyl-tRNA synthetase [Escherichia coli KTE23]
 gi|432745851|ref|ZP_19980520.1| arginyl-tRNA synthetase [Escherichia coli KTE43]
 gi|432750347|ref|ZP_19984954.1| arginyl-tRNA synthetase [Escherichia coli KTE29]
 gi|432765232|ref|ZP_19999671.1| arginyl-tRNA synthetase [Escherichia coli KTE48]
 gi|432783754|ref|ZP_20017935.1| arginyl-tRNA synthetase [Escherichia coli KTE63]
 gi|432802029|ref|ZP_20036010.1| arginyl-tRNA synthetase [Escherichia coli KTE84]
 gi|432805942|ref|ZP_20039880.1| arginyl-tRNA synthetase [Escherichia coli KTE91]
 gi|432834869|ref|ZP_20068408.1| arginyl-tRNA synthetase [Escherichia coli KTE136]
 gi|432844750|ref|ZP_20077649.1| arginyl-tRNA synthetase [Escherichia coli KTE141]
 gi|432862008|ref|ZP_20086768.1| arginyl-tRNA synthetase [Escherichia coli KTE146]
 gi|432905040|ref|ZP_20113946.1| arginyl-tRNA synthetase [Escherichia coli KTE194]
 gi|432919297|ref|ZP_20123428.1| arginyl-tRNA synthetase [Escherichia coli KTE173]
 gi|432927104|ref|ZP_20128644.1| arginyl-tRNA synthetase [Escherichia coli KTE175]
 gi|432934536|ref|ZP_20134045.1| arginyl-tRNA synthetase [Escherichia coli KTE184]
 gi|432938056|ref|ZP_20136433.1| arginyl-tRNA synthetase [Escherichia coli KTE183]
 gi|432972031|ref|ZP_20160899.1| arginyl-tRNA synthetase [Escherichia coli KTE207]
 gi|432978544|ref|ZP_20167362.1| arginyl-tRNA synthetase [Escherichia coli KTE209]
 gi|432981281|ref|ZP_20170057.1| arginyl-tRNA synthetase [Escherichia coli KTE211]
 gi|432985560|ref|ZP_20174284.1| arginyl-tRNA synthetase [Escherichia coli KTE215]
 gi|432990881|ref|ZP_20179545.1| arginyl-tRNA synthetase [Escherichia coli KTE217]
 gi|432995536|ref|ZP_20184147.1| arginyl-tRNA synthetase [Escherichia coli KTE218]
 gi|433000112|ref|ZP_20188642.1| arginyl-tRNA synthetase [Escherichia coli KTE223]
 gi|433033625|ref|ZP_20221356.1| arginyl-tRNA synthetase [Escherichia coli KTE112]
 gi|433038796|ref|ZP_20226400.1| arginyl-tRNA synthetase [Escherichia coli KTE113]
 gi|433058260|ref|ZP_20245319.1| arginyl-tRNA synthetase [Escherichia coli KTE124]
 gi|433082740|ref|ZP_20269205.1| arginyl-tRNA synthetase [Escherichia coli KTE133]
 gi|433087443|ref|ZP_20273826.1| arginyl-tRNA synthetase [Escherichia coli KTE137]
 gi|433092301|ref|ZP_20278575.1| arginyl-tRNA synthetase [Escherichia coli KTE138]
 gi|433096696|ref|ZP_20282893.1| arginyl-tRNA synthetase [Escherichia coli KTE139]
 gi|433101331|ref|ZP_20287428.1| arginyl-tRNA synthetase [Escherichia coli KTE145]
 gi|433106060|ref|ZP_20292051.1| arginyl-tRNA synthetase [Escherichia coli KTE148]
 gi|433111092|ref|ZP_20296957.1| arginyl-tRNA synthetase [Escherichia coli KTE150]
 gi|433115725|ref|ZP_20301529.1| arginyl-tRNA synthetase [Escherichia coli KTE153]
 gi|433125362|ref|ZP_20310937.1| arginyl-tRNA synthetase [Escherichia coli KTE160]
 gi|433139425|ref|ZP_20324696.1| arginyl-tRNA synthetase [Escherichia coli KTE167]
 gi|433144405|ref|ZP_20329557.1| arginyl-tRNA synthetase [Escherichia coli KTE168]
 gi|433149373|ref|ZP_20334409.1| arginyl-tRNA synthetase [Escherichia coli KTE174]
 gi|433173741|ref|ZP_20358275.1| arginyl-tRNA synthetase [Escherichia coli KTE232]
 gi|433188606|ref|ZP_20372709.1| arginyl-tRNA synthetase [Escherichia coli KTE88]
 gi|433193862|ref|ZP_20377861.1| arginyl-tRNA synthetase [Escherichia coli KTE90]
 gi|433198437|ref|ZP_20382349.1| arginyl-tRNA synthetase [Escherichia coli KTE94]
 gi|433208033|ref|ZP_20391714.1| arginyl-tRNA synthetase [Escherichia coli KTE97]
 gi|433212676|ref|ZP_20396279.1| arginyl-tRNA synthetase [Escherichia coli KTE99]
 gi|442604597|ref|ZP_21019442.1| Arginyl-tRNA synthetase [Escherichia coli Nissle 1917]
 gi|29427485|sp|Q8FGQ0.1|SYR_ECOL6 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|189083533|sp|B1J0L2.1|SYR_ECOLC RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|238065088|sp|B6I0S7.1|SYR_ECOSE RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|26108547|gb|AAN80750.1|AE016762_3 Arginyl-tRNA synthetase [Escherichia coli CFT073]
 gi|169754707|gb|ACA77406.1| arginyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|194421986|gb|EDX37990.1| arginyl-tRNA synthetase [Escherichia coli 101-1]
 gi|209912561|dbj|BAG77635.1| arginyl-tRNA synthase [Escherichia coli SE11]
 gi|222033625|emb|CAP76366.1| Arginyl-tRNA synthetase [Escherichia coli LF82]
 gi|227837269|gb|EEJ47735.1| arginyl-tRNA synthetase [Escherichia coli 83972]
 gi|281178946|dbj|BAI55276.1| arginyl-tRNA synthetase [Escherichia coli SE15]
 gi|291323093|gb|EFE62521.1| arginyl-tRNA synthetase [Escherichia coli B088]
 gi|300297585|gb|EFJ53970.1| arginyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300406413|gb|EFJ89951.1| arginyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|305852453|gb|EFM52904.1| arginyl-tRNA synthetase [Escherichia coli NC101]
 gi|307553895|gb|ADN46670.1| arginine tRNA synthetase [Escherichia coli ABU 83972]
 gi|312288543|gb|EFR16445.1| arginyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|312946476|gb|ADR27303.1| arginyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315290304|gb|EFU49680.1| arginyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|323186348|gb|EFZ71698.1| arginyl-tRNA synthetase [Escherichia coli OK1357]
 gi|323186757|gb|EFZ72077.1| arginyl-tRNA synthetase [Escherichia coli RN587/1]
 gi|323972615|gb|EGB67818.1| arginyl-tRNA synthetase [Escherichia coli TA007]
 gi|324017993|gb|EGB87212.1| arginyl-tRNA synthetase [Escherichia coli MS 117-3]
 gi|331063766|gb|EGI35677.1| arginine--tRNA ligase [Escherichia coli TA271]
 gi|331074221|gb|EGI45541.1| arginine--tRNA ligase [Escherichia coli H591]
 gi|332343602|gb|AEE56936.1| arginyl-tRNA synthetase ArgS [Escherichia coli UMNK88]
 gi|333969963|gb|AEG36768.1| Arginyl-tRNA synthetase [Escherichia coli NA114]
 gi|338770198|gb|EGP24965.1| Arginyl-tRNA synthetase [Escherichia coli PCN033]
 gi|345337176|gb|EGW69608.1| arginyl-tRNA synthetase [Escherichia coli STEC_B2F1]
 gi|345350141|gb|EGW82416.1| arginyl-tRNA synthetase [Escherichia coli STEC_94C]
 gi|345374267|gb|EGX06220.1| arginyl-tRNA synthetase [Escherichia coli STEC_MHI813]
 gi|355420478|gb|AER84675.1| arginyl-tRNA synthetase [Escherichia coli str. 'clone D i2']
 gi|355425398|gb|AER89594.1| arginyl-tRNA synthetase [Escherichia coli str. 'clone D i14']
 gi|371597091|gb|EHN85916.1| arginyl-tRNA synthetase [Escherichia coli TA124]
 gi|371611610|gb|EHO00132.1| arginyl-tRNA synthetase [Escherichia coli E101]
 gi|377845711|gb|EHU10733.1| arginyl-tRNA synthetase [Escherichia coli DEC1A]
 gi|377846440|gb|EHU11452.1| arginyl-tRNA synthetase [Escherichia coli DEC1C]
 gi|377849388|gb|EHU14362.1| arginyl-tRNA synthetase [Escherichia coli DEC1B]
 gi|377858697|gb|EHU23536.1| arginyl-tRNA synthetase [Escherichia coli DEC1D]
 gi|377862272|gb|EHU27085.1| arginyl-tRNA synthetase [Escherichia coli DEC1E]
 gi|377865665|gb|EHU30456.1| arginyl-tRNA synthetase [Escherichia coli DEC2A]
 gi|377876174|gb|EHU40782.1| arginyl-tRNA synthetase [Escherichia coli DEC2B]
 gi|377880268|gb|EHU44839.1| arginyl-tRNA synthetase [Escherichia coli DEC2C]
 gi|377881577|gb|EHU46134.1| arginyl-tRNA synthetase [Escherichia coli DEC2D]
 gi|377894080|gb|EHU58505.1| arginyl-tRNA synthetase [Escherichia coli DEC2E]
 gi|378009492|gb|EHV72448.1| arginyl-tRNA synthetase [Escherichia coli DEC6D]
 gi|378010748|gb|EHV73693.1| arginyl-tRNA synthetase [Escherichia coli DEC6E]
 gi|383473021|gb|EID65051.1| arginyl-tRNA synthetase [Escherichia coli W26]
 gi|384471208|gb|EIE55292.1| arginyl-tRNA synthetase [Escherichia coli AI27]
 gi|385713256|gb|EIG50192.1| arginyl-tRNA synthetase [Escherichia coli B799]
 gi|386151436|gb|EIH02725.1| arginine--tRNA ligase [Escherichia coli 5.0588]
 gi|386158104|gb|EIH14441.1| arginine--tRNA ligase [Escherichia coli 97.0259]
 gi|386160895|gb|EIH22700.1| arginine--tRNA ligase [Escherichia coli 1.2264]
 gi|386167332|gb|EIH33848.1| arginine--tRNA ligase [Escherichia coli 96.0497]
 gi|386201997|gb|EII00988.1| arginine--tRNA ligase [Escherichia coli 96.154]
 gi|386209069|gb|EII19560.1| arginine--tRNA ligase [Escherichia coli 9.0111]
 gi|386232046|gb|EII59393.1| arginine--tRNA ligase [Escherichia coli 3.3884]
 gi|386243160|gb|EII84893.1| arginine--tRNA ligase [Escherichia coli 3003]
 gi|386249182|gb|EII95353.1| arginine--tRNA ligase [Escherichia coli TW07793]
 gi|388387439|gb|EIL49056.1| arginyl-tRNA synthetase [Escherichia coli KD1]
 gi|397784466|gb|EJK95319.1| arginyl-tRNA synthetase [Escherichia coli STEC_O31]
 gi|408202893|gb|EKI27951.1| arginine--tRNA ligase [Escherichia coli ARS4.2123]
 gi|408216793|gb|EKI41107.1| arginine--tRNA ligase [Escherichia coli 07798]
 gi|408229408|gb|EKI52840.1| arginine--tRNA ligase [Escherichia coli N1]
 gi|430906750|gb|ELC28255.1| arginyl-tRNA synthetase [Escherichia coli KTE16]
 gi|430908544|gb|ELC29937.1| arginyl-tRNA synthetase [Escherichia coli KTE15]
 gi|430919352|gb|ELC40292.1| arginyl-tRNA synthetase [Escherichia coli KTE21]
 gi|430935316|gb|ELC55638.1| arginyl-tRNA synthetase [Escherichia coli KTE39]
 gi|430944897|gb|ELC64986.1| arginyl-tRNA synthetase [Escherichia coli KTE178]
 gi|430953634|gb|ELC72532.1| arginyl-tRNA synthetase [Escherichia coli KTE187]
 gi|430964379|gb|ELC81826.1| arginyl-tRNA synthetase [Escherichia coli KTE188]
 gi|430980730|gb|ELC97479.1| arginyl-tRNA synthetase [Escherichia coli KTE193]
 gi|430982784|gb|ELC99473.1| arginyl-tRNA synthetase [Escherichia coli KTE201]
 gi|431007875|gb|ELD22686.1| arginyl-tRNA synthetase [Escherichia coli KTE210]
 gi|431016030|gb|ELD29577.1| arginyl-tRNA synthetase [Escherichia coli KTE212]
 gi|431024478|gb|ELD37643.1| arginyl-tRNA synthetase [Escherichia coli KTE214]
 gi|431029100|gb|ELD42132.1| arginyl-tRNA synthetase [Escherichia coli KTE216]
 gi|431039585|gb|ELD50405.1| arginyl-tRNA synthetase [Escherichia coli KTE220]
 gi|431042706|gb|ELD53194.1| arginyl-tRNA synthetase [Escherichia coli KTE224]
 gi|431053078|gb|ELD62714.1| arginyl-tRNA synthetase [Escherichia coli KTE230]
 gi|431054491|gb|ELD64061.1| arginyl-tRNA synthetase [Escherichia coli KTE233]
 gi|431084631|gb|ELD90760.1| arginyl-tRNA synthetase [Escherichia coli KTE47]
 gi|431092008|gb|ELD97716.1| arginyl-tRNA synthetase [Escherichia coli KTE49]
 gi|431100720|gb|ELE05690.1| arginyl-tRNA synthetase [Escherichia coli KTE53]
 gi|431128069|gb|ELE30361.1| arginyl-tRNA synthetase [Escherichia coli KTE60]
 gi|431138796|gb|ELE40608.1| arginyl-tRNA synthetase [Escherichia coli KTE67]
 gi|431149034|gb|ELE50307.1| arginyl-tRNA synthetase [Escherichia coli KTE72]
 gi|431180411|gb|ELE80298.1| arginyl-tRNA synthetase [Escherichia coli KTE86]
 gi|431191180|gb|ELE90565.1| arginyl-tRNA synthetase [Escherichia coli KTE87]
 gi|431192010|gb|ELE91384.1| arginyl-tRNA synthetase [Escherichia coli KTE93]
 gi|431211032|gb|ELF09015.1| arginyl-tRNA synthetase [Escherichia coli KTE119]
 gi|431234820|gb|ELF30214.1| arginyl-tRNA synthetase [Escherichia coli KTE162]
 gi|431244477|gb|ELF38785.1| arginyl-tRNA synthetase [Escherichia coli KTE169]
 gi|431249575|gb|ELF43730.1| arginyl-tRNA synthetase [Escherichia coli KTE6]
 gi|431265847|gb|ELF57409.1| arginyl-tRNA synthetase [Escherichia coli KTE17]
 gi|431273569|gb|ELF64643.1| arginyl-tRNA synthetase [Escherichia coli KTE18]
 gi|431283262|gb|ELF74121.1| arginyl-tRNA synthetase [Escherichia coli KTE23]
 gi|431291988|gb|ELF82484.1| arginyl-tRNA synthetase [Escherichia coli KTE43]
 gi|431297264|gb|ELF86922.1| arginyl-tRNA synthetase [Escherichia coli KTE29]
 gi|431310993|gb|ELF99173.1| arginyl-tRNA synthetase [Escherichia coli KTE48]
 gi|431329622|gb|ELG16908.1| arginyl-tRNA synthetase [Escherichia coli KTE63]
 gi|431349006|gb|ELG35848.1| arginyl-tRNA synthetase [Escherichia coli KTE84]
 gi|431355063|gb|ELG41777.1| arginyl-tRNA synthetase [Escherichia coli KTE91]
 gi|431385229|gb|ELG69216.1| arginyl-tRNA synthetase [Escherichia coli KTE136]
 gi|431395077|gb|ELG78590.1| arginyl-tRNA synthetase [Escherichia coli KTE141]
 gi|431405755|gb|ELG88988.1| arginyl-tRNA synthetase [Escherichia coli KTE146]
 gi|431433340|gb|ELH15012.1| arginyl-tRNA synthetase [Escherichia coli KTE194]
 gi|431444611|gb|ELH25633.1| arginyl-tRNA synthetase [Escherichia coli KTE173]
 gi|431445331|gb|ELH26258.1| arginyl-tRNA synthetase [Escherichia coli KTE175]
 gi|431453517|gb|ELH33924.1| arginyl-tRNA synthetase [Escherichia coli KTE184]
 gi|431464140|gb|ELH44262.1| arginyl-tRNA synthetase [Escherichia coli KTE183]
 gi|431479438|gb|ELH59173.1| arginyl-tRNA synthetase [Escherichia coli KTE209]
 gi|431482732|gb|ELH62434.1| arginyl-tRNA synthetase [Escherichia coli KTE207]
 gi|431492036|gb|ELH71639.1| arginyl-tRNA synthetase [Escherichia coli KTE211]
 gi|431494963|gb|ELH74549.1| arginyl-tRNA synthetase [Escherichia coli KTE217]
 gi|431500997|gb|ELH79983.1| arginyl-tRNA synthetase [Escherichia coli KTE215]
 gi|431507249|gb|ELH85535.1| arginyl-tRNA synthetase [Escherichia coli KTE218]
 gi|431510129|gb|ELH88376.1| arginyl-tRNA synthetase [Escherichia coli KTE223]
 gi|431552256|gb|ELI26218.1| arginyl-tRNA synthetase [Escherichia coli KTE113]
 gi|431553150|gb|ELI27080.1| arginyl-tRNA synthetase [Escherichia coli KTE112]
 gi|431570903|gb|ELI43811.1| arginyl-tRNA synthetase [Escherichia coli KTE124]
 gi|431603067|gb|ELI72494.1| arginyl-tRNA synthetase [Escherichia coli KTE133]
 gi|431606489|gb|ELI75865.1| arginyl-tRNA synthetase [Escherichia coli KTE137]
 gi|431610847|gb|ELI80131.1| arginyl-tRNA synthetase [Escherichia coli KTE138]
 gi|431616957|gb|ELI85980.1| arginyl-tRNA synthetase [Escherichia coli KTE139]
 gi|431620461|gb|ELI89338.1| arginyl-tRNA synthetase [Escherichia coli KTE145]
 gi|431628396|gb|ELI96772.1| arginyl-tRNA synthetase [Escherichia coli KTE150]
 gi|431629284|gb|ELI97650.1| arginyl-tRNA synthetase [Escherichia coli KTE148]
 gi|431635251|gb|ELJ03466.1| arginyl-tRNA synthetase [Escherichia coli KTE153]
 gi|431646747|gb|ELJ14239.1| arginyl-tRNA synthetase [Escherichia coli KTE160]
 gi|431661803|gb|ELJ28615.1| arginyl-tRNA synthetase [Escherichia coli KTE167]
 gi|431662951|gb|ELJ29719.1| arginyl-tRNA synthetase [Escherichia coli KTE168]
 gi|431672037|gb|ELJ38310.1| arginyl-tRNA synthetase [Escherichia coli KTE174]
 gi|431693631|gb|ELJ59043.1| arginyl-tRNA synthetase [Escherichia coli KTE232]
 gi|431706649|gb|ELJ71219.1| arginyl-tRNA synthetase [Escherichia coli KTE88]
 gi|431717164|gb|ELJ81266.1| arginyl-tRNA synthetase [Escherichia coli KTE90]
 gi|431723103|gb|ELJ87065.1| arginyl-tRNA synthetase [Escherichia coli KTE94]
 gi|431730452|gb|ELJ94016.1| arginyl-tRNA synthetase [Escherichia coli KTE97]
 gi|431734958|gb|ELJ98334.1| arginyl-tRNA synthetase [Escherichia coli KTE99]
 gi|441714854|emb|CCQ05419.1| Arginyl-tRNA synthetase [Escherichia coli Nissle 1917]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|386704397|ref|YP_006168244.1| arginyl-tRNA synthetase [Escherichia coli P12b]
 gi|383102565|gb|AFG40074.1| Arginyl-tRNA synthetase [Escherichia coli P12b]
          Length = 563

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 21  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 67

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 68  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 124

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 125 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 183

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 184 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 243

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 244 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 300

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 301 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 353

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 354 M------FGMMLGKDGKPFKTRAGGTVKLADL 379



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 121 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 179

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 180 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 239

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 240 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 299

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 300 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 358

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 359 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVSEKN--PDMPADELEKLANAVGIGAVK 416

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 417 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 465



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 383  ALERARRLVSEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 440

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 441  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 496

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 497  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 552

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 553  DTLGIETVERM 563



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 21  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 67

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 68  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 113


>gi|16129828|ref|NP_416390.1| arginyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|170081532|ref|YP_001730852.1| arginyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|188493635|ref|ZP_03000905.1| arginyl-tRNA synthetase [Escherichia coli 53638]
 gi|194434108|ref|ZP_03066377.1| arginyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|238901091|ref|YP_002926887.1| arginyl-tRNA synthetase [Escherichia coli BW2952]
 gi|251785324|ref|YP_002999628.1| arginyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253773167|ref|YP_003035998.1| arginyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161936|ref|YP_003045044.1| arginyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|254288724|ref|YP_003054472.1| arginyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|291283058|ref|YP_003499876.1| arginyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|293410188|ref|ZP_06653764.1| arginyl-tRNA synthetase [Escherichia coli B354]
 gi|300822350|ref|ZP_07102491.1| arginyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300928908|ref|ZP_07144413.1| arginyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300935853|ref|ZP_07150811.1| arginyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|301029326|ref|ZP_07192423.1| arginyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|301645607|ref|ZP_07245536.1| arginyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|312969919|ref|ZP_07784102.1| arginyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|331642494|ref|ZP_08343629.1| arginine--tRNA ligase [Escherichia coli H736]
 gi|331657926|ref|ZP_08358888.1| arginine--tRNA ligase [Escherichia coli TA206]
 gi|331683384|ref|ZP_08383985.1| arginine--tRNA ligase [Escherichia coli H299]
 gi|386280937|ref|ZP_10058601.1| arginyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|386595312|ref|YP_006091712.1| arginyl-tRNA synthetase [Escherichia coli DH1]
 gi|387507125|ref|YP_006159381.1| arginyl-tRNA synthetase [Escherichia coli O55:H7 str. RM12579]
 gi|387612363|ref|YP_006115479.1| arginyl-tRNA synthetase [Escherichia coli ETEC H10407]
 gi|387621596|ref|YP_006129223.1| arginyl-tRNA synthetase [Escherichia coli DH1]
 gi|388477950|ref|YP_490138.1| arginyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|404375253|ref|ZP_10980441.1| arginyl-tRNA synthetase [Escherichia sp. 1_1_43]
 gi|415775291|ref|ZP_11487207.1| arginyl-tRNA synthetase [Escherichia coli 3431]
 gi|416288987|ref|ZP_11649424.1| Arginyl-tRNA synthetase [Shigella boydii ATCC 9905]
 gi|416785967|ref|ZP_11878863.1| arginyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|416796946|ref|ZP_11883780.1| arginyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|416808390|ref|ZP_11888435.1| arginyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97]
 gi|416827644|ref|ZP_11897660.1| arginyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|416829024|ref|ZP_11898318.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
 gi|417124410|ref|ZP_11973099.1| arginine--tRNA ligase [Escherichia coli 97.0246]
 gi|417263119|ref|ZP_12050565.1| arginine--tRNA ligase [Escherichia coli 2.3916]
 gi|417271102|ref|ZP_12058451.1| arginine--tRNA ligase [Escherichia coli 2.4168]
 gi|417276849|ref|ZP_12064175.1| arginine--tRNA ligase [Escherichia coli 3.2303]
 gi|417292771|ref|ZP_12080052.1| arginine--tRNA ligase [Escherichia coli B41]
 gi|417613298|ref|ZP_12263759.1| arginyl-tRNA synthetase [Escherichia coli STEC_EH250]
 gi|417618439|ref|ZP_12268859.1| arginyl-tRNA synthetase [Escherichia coli G58-1]
 gi|417634794|ref|ZP_12285008.1| arginyl-tRNA synthetase [Escherichia coli STEC_S1191]
 gi|417639412|ref|ZP_12289562.1| arginyl-tRNA synthetase [Escherichia coli TX1999]
 gi|417671950|ref|ZP_12321431.1| arginyl-tRNA synthetase [Shigella dysenteriae 155-74]
 gi|417943551|ref|ZP_12586799.1| arginyl-tRNA synthetase [Escherichia coli XH140A]
 gi|417974975|ref|ZP_12615776.1| arginyl-tRNA synthetase [Escherichia coli XH001]
 gi|418303205|ref|ZP_12914999.1| arginyl-tRNA synthetase [Escherichia coli UMNF18]
 gi|418957755|ref|ZP_13509678.1| arginyl-tRNA synthetase [Escherichia coli J53]
 gi|419075678|ref|ZP_13621209.1| arginyl-tRNA synthetase [Escherichia coli DEC3F]
 gi|419120706|ref|ZP_13665672.1| arginyl-tRNA synthetase [Escherichia coli DEC5B]
 gi|419126349|ref|ZP_13671238.1| arginyl-tRNA synthetase [Escherichia coli DEC5C]
 gi|419131813|ref|ZP_13676654.1| arginyl-tRNA synthetase [Escherichia coli DEC5D]
 gi|419136698|ref|ZP_13681497.1| arginyl-tRNA synthetase [Escherichia coli DEC5E]
 gi|419142736|ref|ZP_13687480.1| arginyl-tRNA synthetase [Escherichia coli DEC6A]
 gi|419148699|ref|ZP_13693361.1| arginyl-tRNA synthetase [Escherichia coli DEC6B]
 gi|419154115|ref|ZP_13698682.1| arginyl-tRNA synthetase [Escherichia coli DEC6C]
 gi|419170436|ref|ZP_13714326.1| arginyl-tRNA synthetase [Escherichia coli DEC7A]
 gi|419175535|ref|ZP_13719380.1| arginyl-tRNA synthetase [Escherichia coli DEC7B]
 gi|419181086|ref|ZP_13724703.1| arginyl-tRNA synthetase [Escherichia coli DEC7C]
 gi|419186522|ref|ZP_13730039.1| arginyl-tRNA synthetase [Escherichia coli DEC7D]
 gi|419191808|ref|ZP_13735268.1| arginyl-tRNA synthetase [Escherichia coli DEC7E]
 gi|419700673|ref|ZP_14228278.1| arginyl-tRNA synthetase [Escherichia coli SCI-07]
 gi|419808972|ref|ZP_14333858.1| arginyl-tRNA synthetase [Escherichia coli O32:H37 str. P4]
 gi|419941974|ref|ZP_14458624.1| arginyl-tRNA synthetase [Escherichia coli 75]
 gi|420280881|ref|ZP_14783128.1| arginine--tRNA ligase [Escherichia coli TW06591]
 gi|420347231|ref|ZP_14848632.1| arginyl-tRNA synthetase [Shigella boydii 965-58]
 gi|420385875|ref|ZP_14885233.1| arginyl-tRNA synthetase [Escherichia coli EPECa12]
 gi|421774236|ref|ZP_16210849.1| arginyl-tRNA synthetase [Escherichia coli AD30]
 gi|422335194|ref|ZP_16416195.1| arginyl-tRNA synthetase [Escherichia coli 4_1_47FAA]
 gi|422381543|ref|ZP_16461707.1| arginyl-tRNA synthetase [Escherichia coli MS 57-2]
 gi|422766442|ref|ZP_16820169.1| arginyl-tRNA synthetase [Escherichia coli E1520]
 gi|422772247|ref|ZP_16825935.1| arginyl-tRNA synthetase [Escherichia coli E482]
 gi|422786466|ref|ZP_16839205.1| arginyl-tRNA synthetase [Escherichia coli H489]
 gi|422816842|ref|ZP_16865056.1| arginyl-tRNA synthetase [Escherichia coli M919]
 gi|423704657|ref|ZP_17679080.1| arginyl-tRNA synthetase [Escherichia coli H730]
 gi|425115260|ref|ZP_18517068.1| arginine--tRNA ligase [Escherichia coli 8.0566]
 gi|425119979|ref|ZP_18521685.1| arginine--tRNA ligase [Escherichia coli 8.0569]
 gi|425249342|ref|ZP_18642337.1| arginine--tRNA ligase [Escherichia coli 5905]
 gi|425267477|ref|ZP_18659160.1| arginine--tRNA ligase [Escherichia coli 5412]
 gi|425272990|ref|ZP_18664423.1| arginine--tRNA ligase [Escherichia coli TW15901]
 gi|425283471|ref|ZP_18674531.1| arginine--tRNA ligase [Escherichia coli TW00353]
 gi|432370002|ref|ZP_19613091.1| arginyl-tRNA synthetase [Escherichia coli KTE10]
 gi|432377029|ref|ZP_19620026.1| arginyl-tRNA synthetase [Escherichia coli KTE12]
 gi|432406885|ref|ZP_19649594.1| arginyl-tRNA synthetase [Escherichia coli KTE28]
 gi|432417104|ref|ZP_19659715.1| arginyl-tRNA synthetase [Escherichia coli KTE44]
 gi|432465940|ref|ZP_19708029.1| arginyl-tRNA synthetase [Escherichia coli KTE205]
 gi|432564075|ref|ZP_19800665.1| arginyl-tRNA synthetase [Escherichia coli KTE51]
 gi|432580624|ref|ZP_19817050.1| arginyl-tRNA synthetase [Escherichia coli KTE56]
 gi|432584018|ref|ZP_19820417.1| arginyl-tRNA synthetase [Escherichia coli KTE57]
 gi|432616843|ref|ZP_19852964.1| arginyl-tRNA synthetase [Escherichia coli KTE75]
 gi|432627462|ref|ZP_19863442.1| arginyl-tRNA synthetase [Escherichia coli KTE77]
 gi|432637104|ref|ZP_19872980.1| arginyl-tRNA synthetase [Escherichia coli KTE81]
 gi|432661111|ref|ZP_19896757.1| arginyl-tRNA synthetase [Escherichia coli KTE111]
 gi|432685665|ref|ZP_19920967.1| arginyl-tRNA synthetase [Escherichia coli KTE156]
 gi|432691817|ref|ZP_19927048.1| arginyl-tRNA synthetase [Escherichia coli KTE161]
 gi|432704634|ref|ZP_19939738.1| arginyl-tRNA synthetase [Escherichia coli KTE171]
 gi|432732563|ref|ZP_19967396.1| arginyl-tRNA synthetase [Escherichia coli KTE45]
 gi|432737369|ref|ZP_19972135.1| arginyl-tRNA synthetase [Escherichia coli KTE42]
 gi|432759647|ref|ZP_19994142.1| arginyl-tRNA synthetase [Escherichia coli KTE46]
 gi|432955311|ref|ZP_20147251.1| arginyl-tRNA synthetase [Escherichia coli KTE197]
 gi|432968000|ref|ZP_20156915.1| arginyl-tRNA synthetase [Escherichia coli KTE203]
 gi|433048156|ref|ZP_20235525.1| arginyl-tRNA synthetase [Escherichia coli KTE120]
 gi|433073032|ref|ZP_20259696.1| arginyl-tRNA synthetase [Escherichia coli KTE129]
 gi|433135107|ref|ZP_20320461.1| arginyl-tRNA synthetase [Escherichia coli KTE166]
 gi|433183481|ref|ZP_20367745.1| arginyl-tRNA synthetase [Escherichia coli KTE85]
 gi|442590218|ref|ZP_21009000.1| Arginyl-tRNA synthetase [Escherichia coli O10:K5(L):H4 str. ATCC
           23506]
 gi|442598179|ref|ZP_21015952.1| Arginyl-tRNA synthetase [Escherichia coli O5:K4(L):H4 str. ATCC
           23502]
 gi|450189525|ref|ZP_21890588.1| arginyl-tRNA synthetase [Escherichia coli SEPT362]
 gi|450244533|ref|ZP_21900384.1| arginyl-tRNA synthetase [Escherichia coli S17]
 gi|135169|sp|P11875.1|SYR_ECOLI RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|229558757|sp|B1XHE4.1|SYR_ECODH RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|259511643|sp|C4ZQG0.1|SYR_ECOBW RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|581040|emb|CAA33384.1| unnamed protein product [Escherichia coli K-12]
 gi|1736522|dbj|BAA15686.1| arginyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|1788184|gb|AAC74946.1| arginyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|169889367|gb|ACB03074.1| arginyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|188488834|gb|EDU63937.1| arginyl-tRNA synthetase [Escherichia coli 53638]
 gi|194417652|gb|EDX33752.1| arginyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|209767328|gb|ACI81976.1| arginine tRNA synthetase [Escherichia coli]
 gi|209767334|gb|ACI81979.1| arginine tRNA synthetase [Escherichia coli]
 gi|238860014|gb|ACR62012.1| arginyl-tRNA synthetase [Escherichia coli BW2952]
 gi|242377597|emb|CAQ32353.1| arginyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253324211|gb|ACT28813.1| arginyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973837|gb|ACT39508.1| arginyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253978031|gb|ACT43701.1| arginyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|260449001|gb|ACX39423.1| arginyl-tRNA synthetase [Escherichia coli DH1]
 gi|290762931|gb|ADD56892.1| Arginyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|291470656|gb|EFF13140.1| arginyl-tRNA synthetase [Escherichia coli B354]
 gi|299877752|gb|EFI85963.1| arginyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|300458965|gb|EFK22458.1| arginyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300463136|gb|EFK26629.1| arginyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300525233|gb|EFK46302.1| arginyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|301076139|gb|EFK90945.1| arginyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|309702099|emb|CBJ01414.1| arginyl-tRNA synthetase [Escherichia coli ETEC H10407]
 gi|310338204|gb|EFQ03293.1| arginyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|315136519|dbj|BAJ43678.1| arginyl-tRNA synthetase [Escherichia coli DH1]
 gi|315617901|gb|EFU98499.1| arginyl-tRNA synthetase [Escherichia coli 3431]
 gi|320177757|gb|EFW52745.1| Arginyl-tRNA synthetase [Shigella boydii ATCC 9905]
 gi|320647090|gb|EFX15923.1| arginyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320652373|gb|EFX20671.1| arginyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320657974|gb|EFX25736.1| arginyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658547|gb|EFX26241.1| arginyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668445|gb|EFX35272.1| arginyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
 gi|323937134|gb|EGB33414.1| arginyl-tRNA synthetase [Escherichia coli E1520]
 gi|323940456|gb|EGB36647.1| arginyl-tRNA synthetase [Escherichia coli E482]
 gi|323961931|gb|EGB57530.1| arginyl-tRNA synthetase [Escherichia coli H489]
 gi|324007268|gb|EGB76487.1| arginyl-tRNA synthetase [Escherichia coli MS 57-2]
 gi|331039292|gb|EGI11512.1| arginine--tRNA ligase [Escherichia coli H736]
 gi|331056174|gb|EGI28183.1| arginine--tRNA ligase [Escherichia coli TA206]
 gi|331079599|gb|EGI50796.1| arginine--tRNA ligase [Escherichia coli H299]
 gi|332095145|gb|EGJ00176.1| arginyl-tRNA synthetase [Shigella dysenteriae 155-74]
 gi|339415303|gb|AEJ56975.1| arginyl-tRNA synthetase [Escherichia coli UMNF18]
 gi|342364877|gb|EGU28976.1| arginyl-tRNA synthetase [Escherichia coli XH140A]
 gi|344195584|gb|EGV49653.1| arginyl-tRNA synthetase [Escherichia coli XH001]
 gi|345362809|gb|EGW94954.1| arginyl-tRNA synthetase [Escherichia coli STEC_EH250]
 gi|345376812|gb|EGX08745.1| arginyl-tRNA synthetase [Escherichia coli G58-1]
 gi|345388285|gb|EGX18096.1| arginyl-tRNA synthetase [Escherichia coli STEC_S1191]
 gi|345393810|gb|EGX23579.1| arginyl-tRNA synthetase [Escherichia coli TX1999]
 gi|359332354|dbj|BAL38801.1| arginyl-tRNA synthetase [Escherichia coli str. K-12 substr. MDS42]
 gi|373243795|gb|EHP63293.1| arginyl-tRNA synthetase [Escherichia coli 4_1_47FAA]
 gi|374359119|gb|AEZ40826.1| arginyl-tRNA synthetase [Escherichia coli O55:H7 str. RM12579]
 gi|377923295|gb|EHU87262.1| arginyl-tRNA synthetase [Escherichia coli DEC3F]
 gi|377968913|gb|EHV32304.1| arginyl-tRNA synthetase [Escherichia coli DEC5B]
 gi|377976404|gb|EHV39715.1| arginyl-tRNA synthetase [Escherichia coli DEC5C]
 gi|377977216|gb|EHV40517.1| arginyl-tRNA synthetase [Escherichia coli DEC5D]
 gi|377985032|gb|EHV48254.1| arginyl-tRNA synthetase [Escherichia coli DEC5E]
 gi|377994241|gb|EHV57369.1| arginyl-tRNA synthetase [Escherichia coli DEC6B]
 gi|377995378|gb|EHV58495.1| arginyl-tRNA synthetase [Escherichia coli DEC6A]
 gi|377998154|gb|EHV61249.1| arginyl-tRNA synthetase [Escherichia coli DEC6C]
 gi|378016667|gb|EHV79547.1| arginyl-tRNA synthetase [Escherichia coli DEC7A]
 gi|378024454|gb|EHV87108.1| arginyl-tRNA synthetase [Escherichia coli DEC7C]
 gi|378030226|gb|EHV92830.1| arginyl-tRNA synthetase [Escherichia coli DEC7D]
 gi|378035066|gb|EHV97630.1| arginyl-tRNA synthetase [Escherichia coli DEC7B]
 gi|378039751|gb|EHW02239.1| arginyl-tRNA synthetase [Escherichia coli DEC7E]
 gi|380348156|gb|EIA36439.1| arginyl-tRNA synthetase [Escherichia coli SCI-07]
 gi|384379364|gb|EIE37232.1| arginyl-tRNA synthetase [Escherichia coli J53]
 gi|385157902|gb|EIF19892.1| arginyl-tRNA synthetase [Escherichia coli O32:H37 str. P4]
 gi|385539513|gb|EIF86345.1| arginyl-tRNA synthetase [Escherichia coli M919]
 gi|385705300|gb|EIG42365.1| arginyl-tRNA synthetase [Escherichia coli H730]
 gi|386122120|gb|EIG70733.1| arginyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|386146305|gb|EIG92753.1| arginine--tRNA ligase [Escherichia coli 97.0246]
 gi|386223197|gb|EII45574.1| arginine--tRNA ligase [Escherichia coli 2.3916]
 gi|386234802|gb|EII66778.1| arginine--tRNA ligase [Escherichia coli 2.4168]
 gi|386240338|gb|EII77262.1| arginine--tRNA ligase [Escherichia coli 3.2303]
 gi|386255093|gb|EIJ04783.1| arginine--tRNA ligase [Escherichia coli B41]
 gi|388399071|gb|EIL59878.1| arginyl-tRNA synthetase [Escherichia coli 75]
 gi|390782822|gb|EIO50456.1| arginine--tRNA ligase [Escherichia coli TW06591]
 gi|391271602|gb|EIQ30474.1| arginyl-tRNA synthetase [Shigella boydii 965-58]
 gi|391305923|gb|EIQ63691.1| arginyl-tRNA synthetase [Escherichia coli EPECa12]
 gi|404291314|gb|EJZ48204.1| arginyl-tRNA synthetase [Escherichia sp. 1_1_43]
 gi|408165397|gb|EKH93080.1| arginine--tRNA ligase [Escherichia coli 5905]
 gi|408184239|gb|EKI10572.1| arginine--tRNA ligase [Escherichia coli 5412]
 gi|408194249|gb|EKI19737.1| arginine--tRNA ligase [Escherichia coli TW15901]
 gi|408202759|gb|EKI27821.1| arginine--tRNA ligase [Escherichia coli TW00353]
 gi|408460866|gb|EKJ84644.1| arginyl-tRNA synthetase [Escherichia coli AD30]
 gi|408569678|gb|EKK45665.1| arginine--tRNA ligase [Escherichia coli 8.0566]
 gi|408570920|gb|EKK46876.1| arginine--tRNA ligase [Escherichia coli 8.0569]
 gi|430885629|gb|ELC08500.1| arginyl-tRNA synthetase [Escherichia coli KTE10]
 gi|430899321|gb|ELC21426.1| arginyl-tRNA synthetase [Escherichia coli KTE12]
 gi|430929644|gb|ELC50153.1| arginyl-tRNA synthetase [Escherichia coli KTE28]
 gi|430940466|gb|ELC60649.1| arginyl-tRNA synthetase [Escherichia coli KTE44]
 gi|430993524|gb|ELD09868.1| arginyl-tRNA synthetase [Escherichia coli KTE205]
 gi|431094667|gb|ELE00298.1| arginyl-tRNA synthetase [Escherichia coli KTE51]
 gi|431105455|gb|ELE09790.1| arginyl-tRNA synthetase [Escherichia coli KTE56]
 gi|431116337|gb|ELE19785.1| arginyl-tRNA synthetase [Escherichia coli KTE57]
 gi|431155083|gb|ELE55844.1| arginyl-tRNA synthetase [Escherichia coli KTE75]
 gi|431164155|gb|ELE64556.1| arginyl-tRNA synthetase [Escherichia coli KTE77]
 gi|431172093|gb|ELE72244.1| arginyl-tRNA synthetase [Escherichia coli KTE81]
 gi|431200227|gb|ELE98953.1| arginyl-tRNA synthetase [Escherichia coli KTE111]
 gi|431222700|gb|ELF19976.1| arginyl-tRNA synthetase [Escherichia coli KTE156]
 gi|431227292|gb|ELF24429.1| arginyl-tRNA synthetase [Escherichia coli KTE161]
 gi|431243940|gb|ELF38268.1| arginyl-tRNA synthetase [Escherichia coli KTE171]
 gi|431275750|gb|ELF66777.1| arginyl-tRNA synthetase [Escherichia coli KTE45]
 gi|431284469|gb|ELF75327.1| arginyl-tRNA synthetase [Escherichia coli KTE42]
 gi|431308820|gb|ELF97099.1| arginyl-tRNA synthetase [Escherichia coli KTE46]
 gi|431467982|gb|ELH47988.1| arginyl-tRNA synthetase [Escherichia coli KTE197]
 gi|431471117|gb|ELH51010.1| arginyl-tRNA synthetase [Escherichia coli KTE203]
 gi|431566262|gb|ELI39301.1| arginyl-tRNA synthetase [Escherichia coli KTE120]
 gi|431588764|gb|ELI60034.1| arginyl-tRNA synthetase [Escherichia coli KTE129]
 gi|431657970|gb|ELJ24932.1| arginyl-tRNA synthetase [Escherichia coli KTE166]
 gi|431707579|gb|ELJ72112.1| arginyl-tRNA synthetase [Escherichia coli KTE85]
 gi|441609499|emb|CCP94913.1| Arginyl-tRNA synthetase [Escherichia coli O10:K5(L):H4 str. ATCC
           23506]
 gi|441653192|emb|CCQ01655.1| Arginyl-tRNA synthetase [Escherichia coli O5:K4(L):H4 str. ATCC
           23502]
 gi|449321218|gb|EMD11233.1| arginyl-tRNA synthetase [Escherichia coli S17]
 gi|449321468|gb|EMD11480.1| arginyl-tRNA synthetase [Escherichia coli SEPT362]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|425288756|ref|ZP_18679624.1| arginine--tRNA ligase, partial [Escherichia coli 3006]
 gi|408214769|gb|EKI39179.1| arginine--tRNA ligase, partial [Escherichia coli 3006]
          Length = 549

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 7   QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 53

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 54  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 110

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 111 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 169

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 170 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 229

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 230 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 286

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 287 TTDIACAKYRYESLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 339

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 340 M------FGMMLGKDGKPFKTRAGGTVKLADL 365



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 107 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 165

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 166 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 225

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 226 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 285

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 286 TTTDIACAKYRYESLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 344

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 345 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 402

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 403 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 451



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 369  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 426

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 427  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 482

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 483  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 538

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 539  DTLGIETVERM 549



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 7   QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 53

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 54  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 99


>gi|417805397|ref|ZP_12452353.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. LB226692]
 gi|340740300|gb|EGR74525.1| arginyl-tRNA synthetase [Escherichia coli O104:H4 str. LB226692]
          Length = 563

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 21  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 67

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 68  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 124

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 125 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 183

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 184 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 243

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 244 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 300

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 301 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 353

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 354 M------FGMMLGKDGKPFKTRAGGTVKLADL 379



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 121 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 179

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 180 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 239

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 240 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 299

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 300 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 358

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   +V  G +K
Sbjct: 359 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANSVGIGAVK 416

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 417 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 465



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   +V  G +KYADLS NR  DY+F +D ML   G
Sbjct: 383  ALERARRLVAEKN--PDMPADELEKLANSVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 440

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 441  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 496

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 497  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 552

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 553  DTLGIETVERM 563



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 21  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 67

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 68  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 113


>gi|432850863|ref|ZP_20081558.1| arginyl-tRNA synthetase [Escherichia coli KTE144]
 gi|431400185|gb|ELG83567.1| arginyl-tRNA synthetase [Escherichia coli KTE144]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 108/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  ++L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEEILTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|417689939|ref|ZP_12339166.1| arginyl-tRNA synthetase [Shigella boydii 5216-82]
 gi|332089609|gb|EGI94711.1| arginyl-tRNA synthetase [Shigella boydii 5216-82]
          Length = 577

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|424838263|ref|ZP_18262900.1| arginyl-tRNA synthetase [Shigella flexneri 5a str. M90T]
 gi|383467315|gb|EID62336.1| arginyl-tRNA synthetase [Shigella flexneri 5a str. M90T]
          Length = 577

 Score =  231 bits (590), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN +  +   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKNPY--MPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN +  +   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKNPY--MPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|432534124|ref|ZP_19771102.1| arginyl-tRNA synthetase [Escherichia coli KTE234]
 gi|431061274|gb|ELD70593.1| arginyl-tRNA synthetase [Escherichia coli KTE234]
          Length = 577

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGMPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|397165217|ref|ZP_10488670.1| arginine--tRNA ligase [Enterobacter radicincitans DSM 16656]
 gi|396093324|gb|EJI90881.1| arginine--tRNA ligase [Enterobacter radicincitans DSM 16656]
          Length = 577

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/389 (37%), Positives = 213/389 (54%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        + SL  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLSLDGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL+  +   ++   + +     T  +   +++D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLAPEFLAAEVNQALKSERLGVTQPQPQTIVIDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +   +   +ADL+ FY+E+KK +
Sbjct: 142 SVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLELKQQENAGEM-ALADLEGFYREAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DED  F +RA   VV LQ  D   ++ W  + D++    Q+ Y+RLNVTLT +   GES 
Sbjct: 201 DEDAAFAERARGYVVKLQGGDEYCREMWRKLVDITMSQNQQTYERLNVTLTRKDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/346 (39%), Positives = 188/346 (54%), Gaps = 54/346 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K  +   +   +ADL+ FY
Sbjct: 135 STIIGDASVRTLEFLGHNVIRANHVGDWGTQFGMLIAYLELKQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+KK +DED  F +RA   VV LQ  D   ++ W  + D++    Q+ Y+RLNVTLT +
Sbjct: 194 REAKKHYDEDAAFAERARGYVVKLQGGDEYCREMWRKLVDITMSQNQQTYERLNVTLTRK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   E+   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PEMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R AG+
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGL 476



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 106/190 (55%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            L R+   + +KN   E+   EL +   AV  G +KYADLS NR  DYVF +D ML   GN
Sbjct: 398  LERARRLVAEKN--PEMPADELEKLANAVGIGAVKYADLSKNRTTDYVFDWDNMLAFEGN 455

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA Y+ YAYTR+ S+ R AG+    L    ++ PV++  E+E  LA  LL+  + L +V 
Sbjct: 456  TAPYMQYAYTRVLSVFRKAGLEESVL----ENAPVTIGEERESQLAARLLQFEETLNVVA 511

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
            R+   H +C YLYD++  FS FY++C  +    E     V   RL LA  TAK +K   D
Sbjct: 512  REGTPHVMCAYLYDLAGLFSGFYEHCPILSAGDE----EVRNSRLKLALLTAKTLKLGLD 567

Query: 1110 ILNIRTVHKM 1119
             L I TV +M
Sbjct: 568  TLGIETVDRM 577



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        + SL  + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLSLDGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL+  +   ++   + +     T  +   +++D+S+PN+A++
Sbjct: 82  FINIFLAPEFLAAEVNQALKSERLGVTQPQPQTIVIDYSAPNVAKE 127


>gi|417707760|ref|ZP_12356799.1| arginyl-tRNA synthetase [Shigella flexneri VA-6]
 gi|417712791|ref|ZP_12361768.1| arginyl-tRNA synthetase [Shigella flexneri K-272]
 gi|417717511|ref|ZP_12366422.1| arginyl-tRNA synthetase [Shigella flexneri K-227]
 gi|417828191|ref|ZP_12474747.1| arginyl-tRNA synthetase [Shigella flexneri J1713]
 gi|420320643|ref|ZP_14822477.1| arginyl-tRNA synthetase [Shigella flexneri 2850-71]
 gi|420331569|ref|ZP_14833234.1| arginyl-tRNA synthetase [Shigella flexneri K-1770]
 gi|333002986|gb|EGK22540.1| arginyl-tRNA synthetase [Shigella flexneri VA-6]
 gi|333004491|gb|EGK24020.1| arginyl-tRNA synthetase [Shigella flexneri K-272]
 gi|333017865|gb|EGK37171.1| arginyl-tRNA synthetase [Shigella flexneri K-227]
 gi|335575182|gb|EGM61478.1| arginyl-tRNA synthetase [Shigella flexneri J1713]
 gi|391249606|gb|EIQ08834.1| arginyl-tRNA synthetase [Shigella flexneri 2850-71]
 gi|391252676|gb|EIQ11868.1| arginyl-tRNA synthetase [Shigella flexneri K-1770]
          Length = 577

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|333927734|ref|YP_004501313.1| arginyl-tRNA synthetase [Serratia sp. AS12]
 gi|333932688|ref|YP_004506266.1| arginyl-tRNA synthetase [Serratia plymuthica AS9]
 gi|386329557|ref|YP_006025727.1| arginyl-tRNA synthetase [Serratia sp. AS13]
 gi|333474295|gb|AEF46005.1| Arginyl-tRNA synthetase [Serratia plymuthica AS9]
 gi|333491794|gb|AEF50956.1| Arginyl-tRNA synthetase [Serratia sp. AS12]
 gi|333961890|gb|AEG28663.1| Arginyl-tRNA synthetase [Serratia sp. AS13]
          Length = 576

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 211/376 (56%), Gaps = 36/376 (9%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQVLLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ +  ++         L  +  K+E+A PGF+N+FL+  +  +Q+ D ++N 
Sbjct: 53  -MPPRQLAEKVVQLL--------DLGDIASKVEIAGPGFINIFLNGEWVAQQV-DQVLNA 102

Query: 324 ---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
              G+ P    K+  +++D+S+PN+AKEMHVGHLRSTIIGD  +R  E+LGH V+R NHV
Sbjct: 103 PKLGIAPV---KQQTIVIDYSAPNVAKEMHVGHLRSTIIGDAAARTQEFLGHKVIRANHV 159

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGMLIA+L+ K  +       +ADL+ FY+E+KK +DED  F +RA   VV LQ
Sbjct: 160 GDWGTQFGMLIAYLE-KMQNENASDMGLADLEQFYREAKKHYDEDAEFAERARAYVVKLQ 218

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLL 497
             D    K W  + D++    Q  Y+RLNVTLTE    GES Y   +  +V  L+ KGL 
Sbjct: 219 GGDQYCLKMWRKLVDITMAQNQLTYNRLNVTLTEDDVMGESLYNAMLPGIVADLKAKGLA 278

Query: 498 ELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
              +G  +++    +++   PM ++  K DGG+ Y T+D+A  + R E   AD ++Y  D
Sbjct: 279 VESEGATVVFLDEYQNKDGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLGADRVLYYID 338

Query: 553 LGQGVHFRLLEESTII 568
             Q  H  L++  TI+
Sbjct: 339 SRQ--HQHLMQAWTIV 352



 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 187/361 (51%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R  E+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTQEFLGHKVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+E+KK +DED  F +RA   VV LQ  D    K W  + D++    Q  Y+RL
Sbjct: 187 ADLEQFYREAKKHYDEDAEFAERARAYVVKLQGGDQYCLKMWRKLVDITMAQNQLTYNRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLTE    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTEDDVMGESLYNAMLPGIVADLKAKGLAVESEGATVVFLDEYQNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYI-PDSLSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+LS+LLDE + R+   + +KN   ++   E+      
Sbjct: 366 HHMFGMMLGKDGKPFKTRAGGTVRLSDLLDEAIDRAGKLIAEKN--PDMPAEEMQHLANV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+AS+ + AG++      
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASVFKRAGLDESSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   E+      V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPAEEMQHLANVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            AS+ + AG++   L     + P+ +  E+E ALA  LL+  +V+  V R+   H +C YL
Sbjct: 468  ASVFKRAGLDESSL-----TLPLVMTEEREIALATRLLQFEEVITTVAREGTPHVMCTYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D+E         RL LA  TA+ +K   D L I TV +M
Sbjct: 523  YDLAGLFSGFYEHCQILNADSE----EARQSRLKLALLTARTLKTGLDTLGIDTVERM 576



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 25/148 (16%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQVLLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ +  ++         L  +  K+E A PGF+N+FL+  +  +Q+ D ++N 
Sbjct: 53  -MPPRQLAEKVVQLL--------DLGDIASKVEIAGPGFINIFLNGEWVAQQV-DQVLNA 102

Query: 128 ---GVQPPTLNKKLRVLVDFSSPNIARK 152
              G+ P    K+  +++D+S+PN+A++
Sbjct: 103 PKLGIAPV---KQQTIVIDYSAPNVAKE 127


>gi|395232294|ref|ZP_10410545.1| arginyl-tRNA ligase [Enterobacter sp. Ag1]
 gi|394733280|gb|EJF32908.1| arginyl-tRNA ligase [Enterobacter sp. Ag1]
          Length = 577

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/396 (35%), Positives = 217/396 (54%), Gaps = 38/396 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M++ K          P  +A+ + +        N  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGVMSVAKTLG-----MPPRQVAEKVIA--------NLDLTGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  + I + + +     ++++   ++VD+S+PN+AKEMHVGH+RSTIIGD 
Sbjct: 82  FINIFLDPAFLAKNIDEAVASDRVGVSVSEPQTIVVDYSAPNVAKEMHVGHIRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+ +KK +
Sbjct: 142 AVRTLEFLGHKVIRANHVGDWGTQFGMLIAFLEKQQQENAGEM-ALADLEEFYRAAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE+F +RA   VV LQ  D   ++ W  + D++    QK Y+RLNVTLT     GES 
Sbjct: 201 DEDEVFAERARGYVVKLQGGDEYCREMWRKLVDITMTQNQKTYERLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L++KGL    +G  +++      +D   + + I K DGG+ Y T+D+A 
Sbjct: 261 YNPMLPGIVADLKEKGLAVESEGATVVFLDEFKNKDGDPMGVIIQKKDGGYLYTTTDIAC 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V  L H      
Sbjct: 321 AKYRYETLHADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYVPESVT-LEH-----Q 367

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            FGM++   +D  P + T+S     L     E+ +R
Sbjct: 368 MFGMMLG--KDGKP-FKTRSGGTVKLTDLLDEAMER 400



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 185/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAFLEKQQQENAGEM-ALADLEEFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KK +DEDE+F +RA   VV LQ  D   ++ W  + D++    QK Y+RLNVTLT  
Sbjct: 194 RAAKKHYDEDEVFAERARGYVVKLQGGDEYCREMWRKLVDITMTQNQKTYERLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKEKGLAVESEGATVVFLDEFKNKDGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYFIDSRQHQHLMQAWTIVRKAGYV-PESVTLEHQMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TVKL++LLDE + R+   +  KN   ++   EL    +AV  G +K
Sbjct: 373 LGKDGKPFKTRSGGTVKLTDLLDEAMERARGLVAAKN--PDMPADELENLAKAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A ++
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADLD 477



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 98/178 (55%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL    +AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELENLAKAVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R A ++  +L  A     V +  ++E  LA  LL+  + L +V RD   H +C YL
Sbjct: 468  LSVFRKADLDEAELLKA----KVVITEDREAQLAARLLQFEETLNVVARDGTPHVMCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +    E         RL LA  TAK +K   D L I TV +M
Sbjct: 524  YDVAGLFSGFYEHCPILSAADEA----TRNSRLKLALLTAKTLKLGLDTLGINTVERM 577



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 55/106 (51%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M++ K          P  +A+ + +        N  L  +  K+E A PG
Sbjct: 35  QFGDYQANGVMSVAKTLG-----MPPRQVAEKVIA--------NLDLTGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + + + + +     ++++   ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAKNIDEAVASDRVGVSVSEPQTIVVDYSAPNVAKE 127


>gi|359782642|ref|ZP_09285862.1| arginyl-tRNA synthetase [Pseudomonas psychrotolerans L19]
 gi|359369462|gb|EHK70033.1| arginyl-tRNA synthetase [Pseudomonas psychrotolerans L19]
          Length = 585

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/328 (39%), Positives = 192/328 (58%), Gaps = 29/328 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N A+ L K  + K     P D+A+ + + + ++ A        + K+E+A PGF+
Sbjct: 41  GDFASNVALLLAKPARAK-----PRDLAEKLLAALPADPA--------VSKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F +      ++     +   GV  P+   + RV+VD SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQNHAQLAARLDAAFADPHLGV--PSHEPRQRVVVDLSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R+LE+LG +V+R NHVGDWGTQFGML+A+++++ P        +ADL+ FY+ +K R
Sbjct: 146 AVARVLEFLGDEVIRQNHVGDWGTQFGMLLAYMEEQ-PQ--AAEGELADLEVFYRAAKGR 202

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FD    F  RA + VVALQ  D    + WE    VS    Q++YDRLNV LT    +GES
Sbjct: 203 FDASPEFAARARELVVALQAGDAHCLRLWERFNAVSLSHCQEVYDRLNVKLTPADVKGES 262

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + Q+V  L+  GLL   DG + ++       +   +P+ + K+ GG+ Y T+DLA
Sbjct: 263 AYNDDLAQVVADLDAAGLLTESDGARCVFLDEFKNAEGNPLPVIVQKAGGGYLYSTTDLA 322

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           A+R R  +  AD  +Y  D  Q +HF++
Sbjct: 323 AMRYRSRQLHADRALYFVDQRQALHFQM 350



 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 188/353 (53%), Gaps = 60/353 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG +V+R NHVGDWGTQFGML+A+++++ P        +ADL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDEVIRQNHVGDWGTQFGMLLAYMEEQ-PQ--AAEGELADLEVFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K RFD    F  RA + VVALQ  D    + WE    VS    Q++YDRLNV LT  
Sbjct: 197 RAAKGRFDASPEFAARARELVVALQAGDAHCLRLWERFNAVSLSHCQEVYDRLNVKLTPA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   + Q+V  L+  G L+                       + +K G     
Sbjct: 257 DVKGESAYNDDLAQVVADLDAAGLLTESDGARCVFLDEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q +HF++  E A++AG ++ +   ++ +GFG +
Sbjct: 317 STTDLAAMRYRSRQLHADRALYFVDQRQALHFQMAFEVARRAGFVDASMD-LEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNR------HTELTPTELSEAQQAV 808
            G D + FKTR G TVKL +LLDE   R+   +K++N           +  EL    + V
Sbjct: 376 NGADGRPFKTRDGGTVKLVDLLDEAEERAYQLVKERNAGRAERGEAPFSEDELRHIGRVV 435

Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
               +KYADLS +R  DY F+F++ML   GNTA YLLYAYTR+AS+ R A  N
Sbjct: 436 GIASVKYADLSKHRTSDYSFNFEQMLSFEGNTAPYLLYAYTRVASVLRKAEQN 488



 Score =  110 bits (274), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 102/198 (51%), Gaps = 19/198 (9%)

Query: 926  RGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
            R Y L +  +  + +      +  EL    + V    +KYADLS +R  DY F+F++ML 
Sbjct: 403  RAYQLVKERNAGRAERGEAPFSEDELRHIGRVVGIASVKYADLSKHRTSDYSFNFEQMLS 462

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTP---VSLEHEKEFALAKTLLRMN 1042
              GNTA YLLYAYTR+AS+          LR A Q+ P   + L+  +E  L   L +  
Sbjct: 463  FEGNTAPYLLYAYTRVASV----------LRKAEQNEPAGSIRLDAPQEQDLGGRLAQFG 512

Query: 1043 DVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCI-EKDAEGKIKTVHTGRLLLAEATA 1101
            ++L  V      H LC YLYD++  FS FY+NC  +  +DA      +   RL LA  T 
Sbjct: 513  EILASVADKGTPHLLCSYLYDLAGLFSSFYENCPILTAEDA-----ALRQSRLRLAALTG 567

Query: 1102 KVMKKCFDILNIRTVHKM 1119
            + +K+  ++L + T+ +M
Sbjct: 568  RTLKQGLELLGLHTLERM 585



 Score = 47.0 bits (110), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 18/107 (16%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N A+ L K  + K     P D+A+ + + + ++ A        + K+E A PGF+
Sbjct: 41  GDFASNVALLLAKPARAK-----PRDLAEKLLAALPADPA--------VSKVEIAGPGFL 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F +      ++     +   GV  P+   + RV+VD SSPN+A++
Sbjct: 88  NFFQNHAQLAARLDAAFADPHLGV--PSHEPRQRVVVDLSSPNLAKE 132


>gi|270262239|ref|ZP_06190511.1| arginyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|421783973|ref|ZP_16220416.1| arginine--tRNA ligase [Serratia plymuthica A30]
 gi|270044115|gb|EFA17207.1| arginyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|407753836|gb|EKF63976.1| arginine--tRNA ligase [Serratia plymuthica A30]
          Length = 576

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/376 (36%), Positives = 212/376 (56%), Gaps = 36/376 (9%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQVLLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ +  ++         L  +  K+E+A PGF+N+FL+  +  +Q+ D ++N 
Sbjct: 53  -MPPRQLAEKVVQLL--------DLGDIASKVEIAGPGFINIFLNGEWVAQQV-DQVLNA 102

Query: 324 ---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
              G+ P    K+  +++D+S+PN+AKEMHVGHLRSTIIGD  +R  E+LGH V+R NHV
Sbjct: 103 PKLGIAPV---KQQTIVIDYSAPNVAKEMHVGHLRSTIIGDAAARTQEFLGHKVIRANHV 159

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGMLIA+L+ K  +       ++DL+ FY+E+KK +DED  F +RA   VV LQ
Sbjct: 160 GDWGTQFGMLIAYLE-KMQNENASDMGLSDLEQFYREAKKHYDEDAEFAERARAYVVKLQ 218

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLL 497
             D    K W  + D++    Q  Y+RLNVTLTE    GES Y   + ++V  L+ KGL 
Sbjct: 219 GGDQYCLKMWRKLVDITMAQNQLTYNRLNVTLTEDDVMGESLYNAMLPEIVADLKAKGLA 278

Query: 498 ELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
              +G  +++    +++   PM ++  K DGG+ Y T+D+A  + R E   AD ++Y  D
Sbjct: 279 VESEGATVVFLDEYQNKDGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLGADRVLYYID 338

Query: 553 LGQGVHFRLLEESTII 568
             Q  H  L++  TI+
Sbjct: 339 SRQ--HQHLMQAWTIV 352



 Score =  216 bits (550), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 188/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R  E+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTQEFLGHKVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+E+KK +DED  F +RA   VV LQ  D    K W  + D++    Q  Y+RL
Sbjct: 187 SDLEQFYREAKKHYDEDAEFAERARAYVVKLQGGDQYCLKMWRKLVDITMAQNQLTYNRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLTE    GES Y   + ++V  L+ KG                         + + K
Sbjct: 247 NVTLTEDDVMGESLYNAMLPEIVADLKAKGLAVESEGATVVFLDEYQNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYI-PDSLSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+LS+LLDE + R+   + +KN   ++   E+      
Sbjct: 366 HHMFGMMLGKDGKPFKTRAGGTVRLSDLLDEAIDRAGKLIAEKN--PDMPAEEMQHLANV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+AS+ + AG++      
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASVFKRAGLDENSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   E+      V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPAEEMQHLANVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            AS+ + AG++   L     + P+ +  E+E ALA  LL+  +V+  V RD   H +C YL
Sbjct: 468  ASVFKRAGLDENSL-----TLPLVMTEEREIALATRLLQFEEVITTVARDGTPHVMCTYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D+E         RL LA  TA+ +K   D L I TV +M
Sbjct: 523  YDLAGLFSGFYEHCQILNADSE----EARQSRLKLALLTARTLKTGLDTLGIDTVERM 576



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 25/148 (16%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQVLLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ +  ++         L  +  K+E A PGF+N+FL+  +  +Q+ D ++N 
Sbjct: 53  -MPPRQLAEKVVQLL--------DLGDIASKVEIAGPGFINIFLNGEWVAQQV-DQVLNA 102

Query: 128 ---GVQPPTLNKKLRVLVDFSSPNIARK 152
              G+ P    K+  +++D+S+PN+A++
Sbjct: 103 PKLGIAPV---KQQTIVIDYSAPNVAKE 127


>gi|262166185|ref|ZP_06033922.1| arginyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262025901|gb|EEY44569.1| arginyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 597

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 210/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 55  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 101

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 102 FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 161

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY+ESKK +
Sbjct: 162 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKESGEISMELSDLEAFYRESKKLY 221

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 222 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 281

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+ KGL   DDG ++++    +++   PM ++  K DGGF Y T+D+A 
Sbjct: 282 YNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFQNKDGEPMGVIVQKRDGGFLYTTTDIAC 341

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 342 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPEQVSLEHHA----- 389

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 390 -FGMMLGKDGRPFKTRAGGTVRLADL 414



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 188/347 (54%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+    +    S  ++DL+AFY
Sbjct: 155 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKESGEISMELSDLEAFY 214

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 215 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 274

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + K+ G    
Sbjct: 275 NVMGESMYNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFQNKDGEPMGVIVQKRDGGFLY 334

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 335 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PEQVSLEHHAFGMM 393

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   +L+  E ++    VA   +K
Sbjct: 394 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PDLSADEKAKIANTVAMAAVK 451

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 452 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 498



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ +L+  E ++    VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 427  ESKNPDLSADEKAKIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 486

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 487  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 541

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 542  YLFELAGIFSSFYEACPILVAEQE----SVKQSRLKLAALTAKTIKQGLALLGIETLERM 597



 Score = 43.9 bits (102), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 55  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 101

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 102 FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKE 147


>gi|325275658|ref|ZP_08141554.1| arginyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324099202|gb|EGB97152.1| arginyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 578

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 207/370 (55%), Gaps = 51/370 (13%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K     G K  P D+A+ + + +       P+ A  I K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKLINAL-------PASAD-ISKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLR 355
           N F        Q  D + N +     +  L         +V+VD S+PN+AKEMHVGHLR
Sbjct: 88  NFF--------QNTDALANRLDAALADAHLGARKAGPAQKVVVDLSAPNLAKEMHVGHLR 139

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415
           STIIGD+++R+LE+LG  V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDTVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           + +K+RFDE E F  RA   VV LQ  DP+    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKQRFDESEAFATRARGLVVKLQAGDPECLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
              GES Y   +  +V  L+ KGLL  D G + ++       D   +P+ + K+DGG+ Y
Sbjct: 256 DVMGESAYNDDLANVVADLKAKGLLVEDQGAQCVFLDEFKNSDGDPLPVIVQKADGGYLY 315

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            T+DLAA+R R    KAD  +Y  D  Q +HF  + E       ++R   ++GH  +++ 
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFE-------VARRAGFVGHP-MQME 367

Query: 588 HVGDWGTQFG 597
           H+G +GT  G
Sbjct: 368 HMG-FGTMNG 376



 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 182/345 (52%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++R+LE+LG  V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDTVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE E F  RA   VV LQ  DP+    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKQRFDESEAFATRARGLVVKLQAGDPECLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLANVVADLKAKGLLVEDQGAQCVFLDEFKNSDGDPLPVIVQKADGGYLY 315

Query: 707 ------------SLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                       ++ K    +Y  D  Q +HF  + E A++AG +  +  +M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFEVARRAGFVG-HPMQMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN    L   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAKERAYALVKEKN--PSLADDELRRIGEVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  103 bits (256), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 91/169 (53%), Gaps = 13/169 (7%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++  L   EL    + V  G +KYADLS +R  DY F+F+ ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPSLADDELRRIGEVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAG--INSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHL 1057
            R+A + R  G   +  D ++  Q+      HE++  LA  L +  + L  V      H L
Sbjct: 468  RVAGVFRKLGKRFDQADGKIVLQAA-----HEQD--LAARLAQFGETLNSVAEKGTPHVL 520

Query: 1058 CEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            C YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+
Sbjct: 521  CSYLYDLAGLFSSFYENCPILAAETPEQQQS----RLRLAALTGRTLKQ 565


>gi|418942978|ref|ZP_13496212.1| arginyl-tRNA synthetase, partial [Escherichia coli O157:H43 str.
           T22]
 gi|375321707|gb|EHS67518.1| arginyl-tRNA synthetase, partial [Escherichia coli O157:H43 str.
           T22]
          Length = 555

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 13  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 59

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 60  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 116

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 117 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 175

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 176 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 235

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 236 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 292

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 293 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 345

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 346 M------FGMMLGKDGKPFKTRAGGTVKLADL 371



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 113 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 171

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 172 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 231

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 232 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 291

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 292 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 350

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 351 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 408

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 409 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 457



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 375  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 432

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 433  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 488

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 489  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 544

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 545  DTLGIETVERM 555



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 13  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 59

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 60  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 105


>gi|221134747|ref|ZP_03561050.1| arginyl-tRNA synthetase [Glaciecola sp. HTCC2999]
          Length = 577

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/329 (38%), Positives = 193/329 (58%), Gaps = 21/329 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FG++Q N AM L K  +      +P D+AQ I  VV         L  + ++ E+A PG
Sbjct: 34  EFGEYQFNGAMGLAKRLR-----CSPRDVAQQILDVV--------DLDGIAEQCEIAGPG 80

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+ LS  +  +Q   ++ +         +  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 81  FINIHLSSQWLAQQASRVLADERLGIETQPQQNIVVDYSAPNLAKEMHVGHLRSTIIGDA 140

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           +++ LE++GH+V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY+++K RF
Sbjct: 141 VAKALEFMGHNVLRQNHMGDWGTQFGMLLAHLNDKLQANEVAETALSDLEDFYRQAKVRF 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           D +E F  RA + VV LQ  D      W+   DVS    +++Y++LNV+LT     GES 
Sbjct: 201 DAEEGFADRAREYVVKLQGGDDACLALWQNFIDVSIAHSEEVYEKLNVSLTREHVMGESA 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  ++  L+ +G+   D G ++++ +   D+   P   +  KS GG+ Y T+DLAA
Sbjct: 261 YNPDLANVISDLQAQGVAVEDAGAQVVFLDELADKNGKPAVYIVQKSGGGYLYATTDLAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           IR R ++  A   +  TD  Q +HF+  E
Sbjct: 321 IRYRKQQLAAHRTLIFTDARQALHFKQTE 349



 Score =  217 bits (552), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/353 (36%), Positives = 187/353 (52%), Gaps = 53/353 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD +++ LE++GH+V+R NH+GDWGTQFGML+AHL DK          ++DL+ FY
Sbjct: 134 STIIGDAVAKALEFMGHNVLRQNHMGDWGTQFGMLLAHLNDKLQANEVAETALSDLEDFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +++K RFD +E F  RA + VV LQ  D      W+   DVS    +++Y++LNV+LT  
Sbjct: 194 RQAKVRFDAEEGFADRAREYVVKLQGGDDACLALWQNFIDVSIAHSEEVYEKLNVSLTRE 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLGIVYV- 717
              GES Y   +  ++  L+ +G                        + + +K G  Y+ 
Sbjct: 254 HVMGESAYNPDLANVISDLQAQGVAVEDAGAQVVFLDELADKNGKPAVYIVQKSGGGYLY 313

Query: 718 -----------------------TDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                                  TD  Q +HF+  E  A+KAG L  ++ +     FG++
Sbjct: 314 ATTDLAAIRYRKQQLAAHRTLIFTDARQALHFKQTEIVARKAGFLAADE-QYQHCPFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL +LLDE + R+   L    R  + +   L++    +  G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLIDLLDEAVERAQTLL--ATRDNDFSADTLADMANKIGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           YADLS NR  DY+F +D ML   GNTA YL YA+TRI SI   A +  E+  E
Sbjct: 431 YADLSKNRTTDYIFDWDAMLSFEGNTAPYLQYAFTRIQSIFNKANVTLENCRE 483



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            R  + +   L++    +  G +KYADLS NR  DY+F +D ML   GNTA YL YA+TRI
Sbjct: 408  RDNDFSADTLADMANKIGIGAVKYADLSKNRTTDYIFDWDAMLSFEGNTAPYLQYAFTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI   A +  E+ R       + +   +E ALA  LL+  D L  +  +   H LC YL
Sbjct: 468  QSIFNKANVTLENCR-----ENIVINAPQEKALATKLLQYQDTLEQMAHEATPHVLCTYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y++++ + +FY+ C  ++ D     K     RL L    +  +    D+L I T+ KM
Sbjct: 523  YELASLYMKFYEACPILKDDVSESDK---ASRLALCALCSNTLSHGLDVLGIATLDKM 577



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 111/264 (42%), Gaps = 35/264 (13%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FG++Q N AM L K  +      +P D+AQ I  VV         L  + ++ E A PG
Sbjct: 34  EFGEYQFNGAMGLAKRLR-----CSPRDVAQQILDVV--------DLDGIAEQCEIAGPG 80

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHD 166
           F+N+ LS  +  +Q   ++ +         +  ++VD+S+PN+A++      HL S I  
Sbjct: 81  FINIHLSSQWLAQQASRVLADERLGIETQPQQNIVVDYSAPNLAKE--MHVGHLRSTIIG 138

Query: 167 ILISKAI---AEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDV--FTHAVQV 221
             ++KA+        +Q       +Q       +N  +         LSD+  F    +V
Sbjct: 139 DAVAKALEFMGHNVLRQNHMGDWGTQFGMLLAHLNDKLQANEVAETALSDLEDFYRQAKV 198

Query: 222 AFPELGDKTASVASTNEKYVHKF--GDFQCNDAMALCKIFKDKG-----EKKNPFDIAQS 274
            F    D     A    +YV K   GD  C   +AL + F D       E     +++ +
Sbjct: 199 RF----DAEEGFADRAREYVVKLQGGDDAC---LALWQNFIDVSIAHSEEVYEKLNVSLT 251

Query: 275 IASVVTSELATNPSLAKVIDKIEV 298
              V+  E A NP LA VI  ++ 
Sbjct: 252 REHVM-GESAYNPDLANVISDLQA 274


>gi|432680459|ref|ZP_19915836.1| arginyl-tRNA synthetase [Escherichia coli KTE143]
 gi|431221389|gb|ELF18710.1| arginyl-tRNA synthetase [Escherichia coli KTE143]
          Length = 577

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGVGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  133 bits (334), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGVGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +   +E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREVREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|300951499|ref|ZP_07165334.1| arginyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300956611|ref|ZP_07168890.1| arginyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300316593|gb|EFJ66377.1| arginyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300449249|gb|EFK12869.1| arginyl-tRNA synthetase [Escherichia coli MS 116-1]
          Length = 577

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/394 (37%), Positives = 212/394 (53%), Gaps = 48/394 (12%)

Query: 241 VHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAK 300
           VH FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A 
Sbjct: 34  VH-FGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAG 79

Query: 301 PGFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRST 357
           PGF+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRST
Sbjct: 80  PGFINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRST 136

Query: 358 IIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKE 417
           IIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY++
Sbjct: 137 IIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRD 195

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--- 474
           +KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT    
Sbjct: 196 AKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDV 255

Query: 475 RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFT 526
            GES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ 
Sbjct: 256 MGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYL 312

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRL 586
           Y T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   
Sbjct: 313 YTTTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLE 365

Query: 587 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +H+      FGM++      F      +  +ADL
Sbjct: 366 HHM------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 20/111 (18%)

Query: 45  VHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAK 104
           VH FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A 
Sbjct: 34  VH-FGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAG 79

Query: 105 PGFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           PGF+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 80  PGFINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|392544558|ref|ZP_10291695.1| arginyl-tRNA ligase [Pseudoalteromonas piscicida JCM 20779]
          Length = 580

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/372 (38%), Positives = 206/372 (55%), Gaps = 33/372 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  L +    A+Q A    G   A   ST  +    FGD+Q N AM   K  K    
Sbjct: 1   MNIKSILIEKANAAMQAAGIPEGTNPAVTQSTRPQ----FGDYQINGAMGAAKALK---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK----DI 320
             NP ++AQ I          N  +A + +K E+A PGF+N+ L   +    ++    D 
Sbjct: 53  -TNPRELAQKIID--------NLDVADLAEKTEIAGPGFINIHLKPEFLAASLEAANTDA 103

Query: 321 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
            +   +  T +K   V+VDFSSPN+AKEMHVGHLRSTIIGD + R LE+ G  V+R NH+
Sbjct: 104 KLGVAEHATPDK---VVVDFSSPNLAKEMHVGHLRSTIIGDAVVRALEFRGDTVIRQNHM 160

Query: 381 GDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           GDWGTQFGMLIAHL+D     +  ++  +ADL++FY+++KKRFD++  F  +A   VV L
Sbjct: 161 GDWGTQFGMLIAHLEDLLNQGVDLENVALADLESFYRDAKKRFDDEAGFADKARDYVVKL 220

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGL 496
           Q  D   +K W+M  D S +  +++Y +LNVTLT      ES Y   +  ++  L++KG+
Sbjct: 221 QGGDAHCQKLWQMFIDTSVKHSEEVYGKLNVTLTRDDIMAESAYNDRLAGVIELLKEKGI 280

Query: 497 LELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT 551
              D G ++++        G   + IV KS GGF Y T+DLAA   R  E   D I+   
Sbjct: 281 AVEDQGAQVVFLDELANKDGEPSVFIVQKSGGGFLYSTTDLAACDYRSNELDVDRILIFV 340

Query: 552 DLGQGVHFRLLE 563
           D  QG+HF  +E
Sbjct: 341 DARQGLHFNQVE 352



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/356 (38%), Positives = 196/356 (55%), Gaps = 58/356 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD + R LE+ G  V+R NH+GDWGTQFGMLIAHL+D     +  ++  
Sbjct: 133 HLR----STIIGDAVVRALEFRGDTVIRQNHMGDWGTQFGMLIAHLEDLLNQGVDLENVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL++FY+++KKRFD++  F  +A   VV LQ  D   +K W+M  D S +  +++Y +
Sbjct: 189 LADLESFYRDAKKRFDDEAGFADKARDYVVKLQGGDAHCQKLWQMFIDTSVKHSEEVYGK 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKG-----------------------NLSLTK 710
           LNVTLT      ES Y   +  ++  L++KG                       ++ + +
Sbjct: 249 LNVTLTRDDIMAESAYNDRLAGVIELLKEKGIAVEDQGAQVVFLDELANKDGEPSVFIVQ 308

Query: 711 KLG------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRM 746
           K G                        I+   D  QG+HF  +E  A+KAG+L  +KT  
Sbjct: 309 KSGGGFLYSTTDLAACDYRSNELDVDRILIFVDARQGLHFNQVEITARKAGLLK-DKTSY 367

Query: 747 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ 806
           +   FG ++G D K FKTR+G TVKLS+LLDE + R+ +KL D  R + L+     E  +
Sbjct: 368 EPSLFGTMMGNDGKPFKTRTGGTVKLSDLLDEAVSRATEKLAD--RASGLSDEARQEIAR 425

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
            V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTR+ SI R A ++S
Sbjct: 426 KVGIGAVKYADLSKHRTSDYIFNWDTMLSFEGATAPYLQYAYTRVRSIFRKANMDS 481



 Score =  103 bits (256), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+ +KL D  R + L+     E  + V  G +KYADLS +R  DY+F++D ML   G
Sbjct: 400  AVSRATEKLAD--RASGLSDEARQEIARKVGIGAVKYADLSKHRTSDYIFNWDTMLSFEG 457

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
             TA YL YAYTR+ SI R A ++S     A+ +  + ++  +E ALA  LL++ +VL L+
Sbjct: 458  ATAPYLQYAYTRVRSIFRKANMDS-----ASLTGRIQIQAPQEKALALKLLQLEEVLDLM 512

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
              +   H LC YLY++++ +  FY+ C  ++ D    ++     RLLL    A  +K   
Sbjct: 513  ISEATPHVLCSYLYELASLYMTFYEACPILKDDVAADVR---ESRLLLCNLVANSLKTGL 569

Query: 1109 DILNIRTVHKM 1119
            D+L I  + +M
Sbjct: 570  DLLGIEVMEQM 580



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 26/160 (16%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  L +    A+Q A    G   A   ST  +    FGD+Q N AM   K  K    
Sbjct: 1   MNIKSILIEKANAAMQAAGIPEGTNPAVTQSTRPQ----FGDYQINGAMGAAKALK---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK----DI 124
             NP ++AQ I          N  +A + +K E A PGF+N+ L   +    ++    D 
Sbjct: 53  -TNPRELAQKIID--------NLDVADLAEKTEIAGPGFINIHLKPEFLAASLEAANTDA 103

Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
            +   +  T +K   V+VDFSSPN+A++      HL S I
Sbjct: 104 KLGVAEHATPDK---VVVDFSSPNLAKE--MHVGHLRSTI 138


>gi|329296274|ref|ZP_08253610.1| arginyl-tRNA synthetase [Plautia stali symbiont]
          Length = 576

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 194/349 (55%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R  E+LGH V+R NHVGDWGTQFGMLIA+L+ +  ++  +   +ADL+AFY
Sbjct: 135 STIIGDAVVRTQEFLGHHVIRANHVGDWGTQFGMLIAYLEKQQNEH-HEDIALADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K+ +DEDE F +RA   VV LQ  D   +  W+ + D++    Q++YDRLNVTLT +
Sbjct: 194 REAKRTYDEDEAFAERARGYVVKLQGGDEYCRAMWKKLVDITMSQNQQVYDRLNVTLTRK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  ++  L +KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIIADLREKGLAVTSEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H +      +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLQQAWTIVRKAGYV-PESVPLEHHAFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T+KLS+LLDE + R+   + +KN   E++  EL E  + V  G +K
Sbjct: 373 LGKDGRPFKTRSGGTIKLSDLLDEAVERAHALVSEKN--PEMSAAELKELVEVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI ++
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIEAD 479



 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 155/443 (34%), Positives = 234/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G          +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQAMVAA----GAPADCEPQVRQSAKVQFGDYQANGIMAVAKKLGQ--- 53

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD----- 319
                 + + +A  V   L     LA +  K+++A PGF+N+FL R +  +Q        
Sbjct: 54  ------VPRQLAEQVVQHL----DLAGIASKVDIAGPGFINIFLDRQWLAQQAAQALQLP 103

Query: 320 -IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + V+ V P T      +++D+S+PN+AKEMHVGH+RSTIIGD + R  E+LGH V+R N
Sbjct: 104 RLGVSEVTPQT------IVIDYSAPNVAKEMHVGHVRSTIIGDAVVRTQEFLGHHVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ +  ++  +   +ADL+AFY+E+K+ +DEDE F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLEKQQNEH-HEDIALADLEAFYREAKRTYDEDEAFAERARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D   +  W+ + D++    Q++YDRLNVTLT +   GES Y   +  ++  L +KG
Sbjct: 217 LQGGDEYCRAMWKKLVDITMSQNQQVYDRLNVTLTRKDVMGESLYNDMLPGIIADLREKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD +
Sbjct: 277 LAVTSEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLHADRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H   L+++     TI R   Y+   V   +H       FGM++   +D  
Sbjct: 334 LYYIDSRQHQH---LQQAW----TIVRKAGYVPESVPLEHHA------FGMMLG--KDGR 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTIKLSDLLDEAVER 400



 Score =  135 bits (341), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 103/178 (57%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ E++  EL E  + V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPEMSAAELKELVEVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AGI ++ LR       + L  E+E  LA  LL+  + +  V RD   H +C YL
Sbjct: 468  LSVFRKAGIEADSLR-----GDIILTDEREALLATRLLQFEETITQVARDGTPHVMCAYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  + E     V   RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGLFSGFYEHCPILSAEEE----NVRNSRLQLAALTAKTLKQGLDTLGIKTVERM 576



 Score = 48.1 bits (113), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G          +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSDKVSQAMVAA----GAPADCEPQVRQSAKVQFGDYQANGIMAVAKKLGQ--- 53

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD----- 123
                 + + +A  V   L     LA +  K++ A PGF+N+FL R +  +Q        
Sbjct: 54  ------VPRQLAEQVVQHL----DLAGIASKVDIAGPGFINIFLDRQWLAQQAAQALQLP 103

Query: 124 -IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + V+ V P T      +++D+S+PN+A++
Sbjct: 104 RLGVSEVTPQT------IVIDYSAPNVAKE 127


>gi|432882116|ref|ZP_20098196.1| arginyl-tRNA synthetase [Escherichia coli KTE154]
 gi|431411622|gb|ELG94733.1| arginyl-tRNA synthetase [Escherichia coli KTE154]
          Length = 577

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHLQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHLQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|71282384|ref|YP_267854.1| arginyl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|109894983|sp|Q487B1.1|SYR_COLP3 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|71148124|gb|AAZ28597.1| arginyl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 582

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/394 (37%), Positives = 212/394 (53%), Gaps = 40/394 (10%)

Query: 205 MSVRDYLSDVFTHA-VQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++++ LS+  + A V    PE  +   S+++       +FGD+Q N  M   K  K   
Sbjct: 1   MNIKNILSERVSAAMVAAGLPEGTNPAISLSNR-----PQFGDYQANGVMGAAKKLK--- 52

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
              NP    + +A+ V +EL     L  +  KIE+A PGF+N+ L   +   Q+ ++  +
Sbjct: 53  --TNP----RELATKVVAEL----DLDGIASKIELAGPGFINIHLDESWLAAQLNEVAQD 102

Query: 324 --------GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
                   G  P   ++   V+VD+S+PN+AKEMHVGHLRSTIIGD + R LE+ G  V+
Sbjct: 103 DFIGVAQRGTTPG--DESQTVVVDYSAPNLAKEMHVGHLRSTIIGDAVVRALEFRGDKVI 160

Query: 376 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQC 435
           R NH+GDWGTQFGMLIAHL DK          +ADL+ FY+E+K RFD +E F  RA   
Sbjct: 161 RQNHMGDWGTQFGMLIAHLSDKLASDEVAETALADLENFYREAKVRFDNEEGFADRARAD 220

Query: 436 VVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLE 492
           VV LQ  D    K W+   D+S    ++IY +LNV+L      GES Y   +  +V  L 
Sbjct: 221 VVKLQSGDEACAKLWQQFIDISITHSEEIYAKLNVSLKRSDIMGESAYNDDLSTVVDELM 280

Query: 493 KKGLLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWI 547
            K + E   G K+++        G  P+ IV KS GGF Y T+DL+A R R  +  A+ I
Sbjct: 281 AKKIAEESQGAKVVFINEMANKDGEAPVFIVQKSGGGFLYATTDLSACRYRSGKLAANRI 340

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGH 581
           +  TD  Q +HF+ +E   I+      L E +G+
Sbjct: 341 IIFTDARQALHFKQVE---IVARKAGLLPENVGY 371



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/357 (39%), Positives = 184/357 (51%), Gaps = 57/357 (15%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD + R LE+ G  V+R NH+GDWGTQFGMLIAHL DK          +
Sbjct: 138 HLR----STIIGDAVVRALEFRGDKVIRQNHMGDWGTQFGMLIAHLSDKLASDEVAETAL 193

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+E+K RFD +E F  RA   VV LQ  D    K W+   D+S    ++IY +L
Sbjct: 194 ADLENFYREAKVRFDNEEGFADRARADVVKLQSGDEACAKLWQQFIDISITHSEEIYAKL 253

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK------------------------------- 703
           NV+L      GES Y   +  +V  L  K                               
Sbjct: 254 NVSLKRSDIMGESAYNDDLSTVVDELMAKKIAEESQGAKVVFINEMANKDGEAPVFIVQK 313

Query: 704 ---GNLSLTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
              G L  T  L              I+  TD  Q +HF+ +E  A+KAG+L P      
Sbjct: 314 SGGGFLYATTDLSACRYRSGKLAANRIIIFTDARQALHFKQVEIVARKAGLL-PENVGYQ 372

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG+++G+D K FKTR+G T+KL+ELLDE + R+   +K+KN   ++T T+L+E  + 
Sbjct: 373 HCPFGMMMGDDGKPFKTRTGGTIKLAELLDESIVRAAALIKEKN--PDITDTDLTEISKK 430

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           V  G +K+ADLS NR  DY+F +  ML   G TA YL YAY+RI SI   AG    D
Sbjct: 431 VGIGAVKFADLSKNRTSDYIFDWKTMLSFEGATAPYLQYAYSRIQSIFSKAGTVKND 487



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ ++T T+L+E  + V  G +K+ADLS NR  DY+F +  ML   G TA YL YAY+
Sbjct: 413  KEKNPDITDTDLTEISKKVGIGAVKFADLSKNRTSDYIFDWKTMLSFEGATAPYLQYAYS 472

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   AG    D         +++   +E ALA  LL++ DV+  V  +   + LC 
Sbjct: 473  RIQSIFSKAGTVKND-------AVINIIEPQEKALALKLLQLEDVVDAVISECTPNLLCN 525

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++++ +  FY+ C  +++   G++K     RL L    A  +K+  DIL I T+ +M
Sbjct: 526  YLYELASLYMSFYEACPILKEGISGEVK---ASRLALCNVVADTLKQGLDILGIETMERM 582



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 31/165 (18%)

Query: 9   MSVRDYLSDVFTHA-VQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++++ LS+  + A V    PE  +   S+++       +FGD+Q N  M   K  K   
Sbjct: 1   MNIKNILSERVSAAMVAAGLPEGTNPAISLSNR-----PQFGDYQANGVMGAAKKLK--- 52

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
              NP    + +A+ V +EL     L  +  KIE A PGF+N+ L   +   Q+ ++  +
Sbjct: 53  --TNP----RELATKVVAEL----DLDGIASKIELAGPGFINIHLDESWLAAQLNEVAQD 102

Query: 128 --------GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                   G  P   ++   V+VD+S+PN+A++      HL S I
Sbjct: 103 DFIGVAQRGTTPG--DESQTVVVDYSAPNLAKE--MHVGHLRSTI 143


>gi|297519857|ref|ZP_06938243.1| arginyl-tRNA synthetase [Escherichia coli OP50]
          Length = 489

 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVA 1018
            NTA Y+ YAYTR+ S+ R A I+ E L  A
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA 484



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|262041990|ref|ZP_06015172.1| arginine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040688|gb|EEW41777.1| arginine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 577

 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 210/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +  +    +ADL+ FY+E+K
Sbjct: 139 GDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQEN-SGEMALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 187/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +  +    +ADL+ FY
Sbjct: 135 STIIGDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQEN-SGEMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL    + V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELENLAKVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R AGI+
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGID 477



 Score =  130 bits (326), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL    + V  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELENLAKVVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AGI+      A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAGIDEN----AMIDAPVVIAEDREAQLAARLLQFEETLSVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKE 127


>gi|416337518|ref|ZP_11673881.1| Arginyl-tRNA synthetase [Escherichia coli WV_060327]
 gi|320194410|gb|EFW69041.1| Arginyl-tRNA synthetase [Escherichia coli WV_060327]
          Length = 577

 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + + +         L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVLTYL--------DLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + + +         L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVLTYL--------DLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|104779603|ref|YP_606101.1| arginyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|122985979|sp|Q1IGB8.1|SYR_PSEE4 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|95108590|emb|CAK13284.1| arginine tRNA synthetase [Pseudomonas entomophila L48]
          Length = 578

 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 161/417 (38%), Positives = 224/417 (53%), Gaps = 59/417 (14%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K     G K  P D+A+ I       +A  P+ A  I K E+A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKI-------IAALPTSAD-ISKAEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLR 355
           N F        Q  D + N +     +  L         +V++D S+PN+AKEMHVGHLR
Sbjct: 88  NFF--------QNTDALANRLDAALADDHLGVHKAGPVEKVVIDMSAPNLAKEMHVGHLR 139

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415
           STIIGD+++R+LE+LG DV+R NHVGDWGTQFGML+A+L++  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDDVIRQNHVGDWGTQFGMLLAYLEEN-P---ITSDELSDLENFY 195

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           + +KKRFDE E F  RA   VV LQ  DPD    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPDCLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTY 527
              GES Y   +  +V  L+ KGLL    G + ++ E+  +     +P+ + K+DGG+ Y
Sbjct: 256 DVMGESAYNDDLANVVADLKSKGLLVESQGAQCVFLEEFKNTEGEPLPVIVQKADGGYLY 315

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            T+DLAA+R R    +AD  +Y  D  Q +HF  + E       ++R   ++GH  +++ 
Sbjct: 316 ATTDLAAVRYRSNTLQADRALYFVDQRQALHFNQVFE-------VARRAGFVGHP-MKME 367

Query: 588 HVGDWGTQFGMLIAHLQD------KFPDYLTKSPPIADLQAFYKESKKRFDEDEIFK 638
           H+G +GT  G      +       K  D LT++   A   A  KE      EDE+ K
Sbjct: 368 HMG-FGTMNGADGRPFKTRDGGTVKLIDLLTEAKERA--YALVKEKNPSLAEDELRK 421



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 186/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++R+LE+LG DV+R NHVGDWGTQFGML+A+L++  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDDVIRQNHVGDWGTQFGMLLAYLEEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  DPD    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPDCLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
              GES Y   +  +V  L+ KG L  ++    V++                        
Sbjct: 256 DVMGESAYNDDLANVVADLKSKGLLVESQGAQCVFLEEFKNTEGEPLPVIVQKADGGYLY 315

Query: 718 --TDLG---------------------QGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
             TDL                      Q +HF  + E A++AG +  +  +M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSNTLQADRALYFVDQRQALHFNQVFEVARRAGFVG-HPMKMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN    L   EL +  + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAKERAYALVKEKN--PSLAEDELRKIGEVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 13/169 (7%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++  L   EL +  + V  G +KYADLS +R  DY F+F+ ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPSLAEDELRKIGEVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIART--AGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHL 1057
            R+A + R    G +  D  +  Q+      HE++  LA  L +  ++L  V      H L
Sbjct: 468  RVAGVFRKLGKGFDEVDGNIVLQAA-----HEQD--LAARLAQFGEILNNVADKGTPHVL 520

Query: 1058 CEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            C YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+
Sbjct: 521  CSYLYDLAGLFSSFYENCPILAAETAEQQQS----RLRLAALTGRTLKQ 565


>gi|422829280|ref|ZP_16877447.1| arginyl-tRNA synthetase [Escherichia coli B093]
 gi|371610013|gb|EHN98545.1| arginyl-tRNA synthetase [Escherichia coli B093]
          Length = 577

 Score =  231 bits (588), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MGPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MGPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|372269177|ref|ZP_09505225.1| arginyl-tRNA synthetase [Alteromonas sp. S89]
          Length = 578

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 145/353 (41%), Positives = 194/353 (54%), Gaps = 58/353 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    +TIIGD ++RLLE+ GH VVR NH+GDWGTQFGML+AHL D+  +       +
Sbjct: 133 HLR----TTIIGDALARLLEFQGHKVVRQNHMGDWGTQFGMLLAHLADQMENQ-DAEVAL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+E+K RFDE+E F  RA + VV LQ  D D  K W+   D+S    ++IY++L
Sbjct: 188 ADLEVFYREAKVRFDEEEGFADRAREYVVKLQGGDADCLKLWQRFIDISISHAEEIYEKL 247

Query: 678 NVTLTER---GESFYQKHMEQLVPYL---------------------EKKGNLSLT---K 710
            VTL       ES Y   +  LV  L                     +K+GN S+    K
Sbjct: 248 GVTLKREDVYAESQYNDDLPVLVKDLLDRGIAVEDQGAIVAFLPEMADKEGNPSVVIIQK 307

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       I+Y+ D  Q +H +     A+KAG +  ++T ++
Sbjct: 308 KGGGYLYATTDLAAIRYRANVLNANRILYIVDARQSLHLQQAFTVARKAGYIADSQT-LE 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG ++G+D K FKTRSG TVKL+ LLDE + R+   + DKN   EL+  E +E  + 
Sbjct: 367 HCAFGTMMGDDGKPFKTRSGGTVKLAALLDEAVERATALVADKN--PELSAEEQAEIGRV 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           V  G +KYADLS  R  DYVF+++ ML   GNTA YL YAYTR+ SI R AGI
Sbjct: 425 VGIGAVKYADLSKTRTNDYVFNWNAMLAFEGNTAPYLQYAYTRVRSIFRRAGI 477



 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 157/440 (35%), Positives = 229/440 (52%), Gaps = 53/440 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++R  L+D+F    Q A    G       +        FGD+Q N AMA  K       
Sbjct: 1   MNIRQQLNDIF----QTAMTNAGIPAECSPAVAPAKKAGFGDYQANGAMAAAKKVG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI------K 318
             NP    + +A+ +   L   P    +I+K+EVA PGF+N+ L+  + G+ +      +
Sbjct: 53  -TNP----RELAAKIIDNLGEQP----MIEKVEVAGPGFINIHLNDAWLGKTLATARADE 103

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + +  V  P       V++D+S PN+AKEMHVGHLR+TIIGD ++RLLE+ GH VVR N
Sbjct: 104 RLNIAAVASPE-----TVVLDYSHPNLAKEMHVGHLRTTIIGDALARLLEFQGHKVVRQN 158

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           H+GDWGTQFGML+AHL D+  +       +ADL+ FY+E+K RFDE+E F  RA + VV 
Sbjct: 159 HMGDWGTQFGMLLAHLADQMENQ-DAEVALADLEVFYREAKVRFDEEEGFADRAREYVVK 217

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG 495
           LQ  D D  K W+   D+S    ++IY++L VTL       ES Y   +  LV  L  +G
Sbjct: 218 LQGGDADCLKLWQRFIDISISHAEEIYEKLGVTLKREDVYAESQYNDDLPVLVKDLLDRG 277

Query: 496 LLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           +   D G  + +     +  G+  + I+ K  GG+ Y T+DLAAIR R     A+ I+Y+
Sbjct: 278 IAVEDQGAIVAFLPEMADKEGNPSVVIIQKKGGGYLYATTDLAAIRYRANVLNANRILYI 337

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q +H   L+++     T++R   Y+  D   L H   +GT  G       D    +
Sbjct: 338 VDARQSLH---LQQAF----TVARKAGYIA-DSQTLEHCA-FGTMMG-------DDGKPF 381

Query: 611 LTKSPPIADLQAFYKESKKR 630
            T+S     L A   E+ +R
Sbjct: 382 KTRSGGTVKLAALLDEAVER 401



 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            + R+   + DKN   EL+  E +E  + V  G +KYADLS  R  DYVF+++ ML   GN
Sbjct: 399  VERATALVADKN--PELSAEEQAEIGRVVGIGAVKYADLSKTRTNDYVFNWNAMLAFEGN 456

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA YL YAYTR+ SI R AGI       +A +  ++L  + E ALA  L +  +VL  V 
Sbjct: 457  TAPYLQYAYTRVRSIFRRAGIEP-----SALTGDITLGTDAERALAIKLNQFGEVLDQVA 511

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
            +D   H LC YLY++++A+  FY+ C  ++   EG  +     RL L +  A+ +     
Sbjct: 512  KDTFPHVLCTYLYELASAYMAFYEACPVLK---EGVTEEEKQSRLQLCDLVARTLSTGLG 568

Query: 1110 ILNIRTVHKM 1119
            +L I T+ KM
Sbjct: 569  LLGIETLEKM 578



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 48/257 (18%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++R  L+D+F    Q A    G       +        FGD+Q N AMA  K       
Sbjct: 1   MNIRQQLNDIF----QTAMTNAGIPAECSPAVAPAKKAGFGDYQANGAMAAAKKVG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM------K 122
             NP    + +A+ +   L   P    +I+K+E A PGF+N+ L+  + G+ +      +
Sbjct: 53  -TNP----RELAAKIIDNLGEQP----MIEKVEVAGPGFINIHLNDAWLGKTLATARADE 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQG- 181
            + +  V  P       V++D+S PN+A++      HL + I    I  A+A   + QG 
Sbjct: 104 RLNIAAVASPE-----TVVLDYSHPNLAKE--MHVGHLRTTI----IGDALARLLEFQGH 152

Query: 182 -ISSSSSSQTKGTAKKMNVP-VSDRMSVRD---YLSD--VFTHAVQVAFPELGDKTASVA 234
            +   +     GT   M +  ++D+M  +D    L+D  VF    +V F    D+    A
Sbjct: 153 KVVRQNHMGDWGTQFGMLLAHLADQMENQDAEVALADLEVFYREAKVRF----DEEEGFA 208

Query: 235 STNEKYVHKF--GDFQC 249
               +YV K   GD  C
Sbjct: 209 DRAREYVVKLQGGDADC 225


>gi|170719563|ref|YP_001747251.1| arginyl-tRNA synthetase [Pseudomonas putida W619]
 gi|229558809|sp|B1J2I3.1|SYR_PSEPW RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|169757566|gb|ACA70882.1| arginyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 578

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 149/370 (40%), Positives = 208/370 (56%), Gaps = 51/370 (13%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K     G K  P D+A+ +       +A  P+ A  I K E+A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKL-------IAALPASAD-ISKAEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLR 355
           N F        Q  D + N +     +  L         +V++D S+PN+AKEMHVGHLR
Sbjct: 88  NFF--------QNTDALANRLDAALADAHLGARKAGPAQKVVIDMSAPNLAKEMHVGHLR 139

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415
           STIIGD+++R+LE+LG  V+R NHVGDWGTQFGML+A+L++  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDQVIRQNHVGDWGTQFGMLLAYLEEN-P---ITSDELSDLENFY 195

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           + +KKRFDE E F  RA   VV LQ  DPD    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPDCMALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTY 527
              GES Y   +  +V  L+ KGLL  D G + ++ E+  +     +P+ + K+DGG+ Y
Sbjct: 256 DVMGESAYNADLANVVADLKAKGLLVEDQGAQCVFLEEFKNSEGEPLPVIVQKADGGYLY 315

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            T+DLAA+R R    KAD  +Y  D  Q +HF  + E       ++R   ++GH  +++ 
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFE-------VARRAGFVGHP-MQME 367

Query: 588 HVGDWGTQFG 597
           H+G +GT  G
Sbjct: 368 HMG-FGTMNG 376



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 182/345 (52%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++R+LE+LG  V+R NHVGDWGTQFGML+A+L++  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDQVIRQNHVGDWGTQFGMLLAYLEEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +KKRFDE E F  RA   VV LQ  DPD    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPDCMALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 685 ---GESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNADLANVVADLKAKGLLVEDQGAQCVFLEEFKNSEGEPLPVIVQKADGGYLY 315

Query: 707 ------------SLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                       ++ K    +Y  D  Q +HF  + E A++AG +  +  +M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFEVARRAGFVG-HPMQMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN    L   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAKERAYALVKEKN--PSLAEDELRHIGEVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++  L   EL    + V  G +KYADLS +R  DY F+F+ ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPSLAEDELRHIGEVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G   +++        + L+   E  LA  L +  ++L  V      H LC 
Sbjct: 468  RVAGVFRKLGKGFDEV-----EGHIVLQAAHEQDLAARLAQFGEILNNVADKGTPHVLCT 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+
Sbjct: 523  YLYDLAGLFSSFYENCPILAAETPEQQQS----RLRLAALTGRTLKQ 565


>gi|152970935|ref|YP_001336044.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238895450|ref|YP_002920185.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|365137595|ref|ZP_09344309.1| arginyl-tRNA synthetase [Klebsiella sp. 4_1_44FAA]
 gi|378979568|ref|YP_005227709.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           HS11286]
 gi|402780100|ref|YP_006635646.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           1084]
 gi|419973929|ref|ZP_14489351.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH1]
 gi|419979321|ref|ZP_14494613.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH2]
 gi|419985225|ref|ZP_14500367.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH4]
 gi|419990551|ref|ZP_14505522.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH5]
 gi|419997855|ref|ZP_14512648.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH6]
 gi|420002688|ref|ZP_14517338.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH7]
 gi|420009348|ref|ZP_14523832.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH8]
 gi|420014885|ref|ZP_14529189.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH9]
 gi|420019978|ref|ZP_14534168.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH10]
 gi|420025738|ref|ZP_14539745.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH11]
 gi|420030458|ref|ZP_14544284.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH12]
 gi|420036380|ref|ZP_14550040.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH14]
 gi|420043085|ref|ZP_14556575.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH16]
 gi|420048919|ref|ZP_14562230.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH17]
 gi|420053878|ref|ZP_14567054.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH18]
 gi|420059313|ref|ZP_14572321.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH19]
 gi|420065975|ref|ZP_14578778.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH20]
 gi|420073585|ref|ZP_14586209.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH21]
 gi|420076441|ref|ZP_14588912.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH22]
 gi|420084493|ref|ZP_14596750.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH23]
 gi|421910101|ref|ZP_16339894.1| Arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           ST258-K26BO]
 gi|421919064|ref|ZP_16348574.1| Arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           ST258-K28BO]
 gi|425076039|ref|ZP_18479142.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           WGLW1]
 gi|425082219|ref|ZP_18485316.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           WGLW2]
 gi|425086672|ref|ZP_18489765.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           WGLW3]
 gi|425092263|ref|ZP_18495348.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           WGLW5]
 gi|428148249|ref|ZP_18996135.1| Arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           ST512-K30BO]
 gi|428931313|ref|ZP_19004911.1| arginyl-tRNA ligase [Klebsiella pneumoniae JHCK1]
 gi|428937860|ref|ZP_19010994.1| arginyl-tRNA ligase [Klebsiella pneumoniae VA360]
 gi|449058530|ref|ZP_21736649.1| arginyl-tRNA ligase [Klebsiella pneumoniae hvKP1]
 gi|166232797|sp|A6TB43.1|SYR_KLEP7 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|150955784|gb|ABR77814.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238547767|dbj|BAH64118.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|363655906|gb|EHL94693.1| arginyl-tRNA synthetase [Klebsiella sp. 4_1_44FAA]
 gi|364518979|gb|AEW62107.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           HS11286]
 gi|397347176|gb|EJJ40285.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH1]
 gi|397349269|gb|EJJ42364.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH2]
 gi|397352273|gb|EJJ45353.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH4]
 gi|397361864|gb|EJJ54521.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH6]
 gi|397366564|gb|EJJ59180.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH5]
 gi|397370712|gb|EJJ63276.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH7]
 gi|397377405|gb|EJJ69639.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH9]
 gi|397381801|gb|EJJ73969.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH8]
 gi|397388368|gb|EJJ80346.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH10]
 gi|397396675|gb|EJJ88362.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH11]
 gi|397401714|gb|EJJ93333.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH12]
 gi|397406702|gb|EJJ98113.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH14]
 gi|397414331|gb|EJK05531.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH17]
 gi|397414899|gb|EJK06091.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH16]
 gi|397423615|gb|EJK14539.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH18]
 gi|397430782|gb|EJK21470.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH20]
 gi|397435730|gb|EJK26338.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH19]
 gi|397437776|gb|EJK28324.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH21]
 gi|397447147|gb|EJK37347.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH22]
 gi|397450179|gb|EJK40292.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           KPNIH23]
 gi|402541010|gb|AFQ65159.1| Arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           1084]
 gi|405593543|gb|EKB66984.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           WGLW1]
 gi|405600471|gb|EKB73636.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           WGLW2]
 gi|405603396|gb|EKB76517.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           WGLW3]
 gi|405612238|gb|EKB84996.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           WGLW5]
 gi|410115996|emb|CCM82519.1| Arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           ST258-K26BO]
 gi|410118703|emb|CCM91199.1| Arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           ST258-K28BO]
 gi|426306554|gb|EKV68654.1| arginyl-tRNA ligase [Klebsiella pneumoniae VA360]
 gi|426308209|gb|EKV70277.1| arginyl-tRNA ligase [Klebsiella pneumoniae JHCK1]
 gi|427541772|emb|CCM92273.1| Arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           ST512-K30BO]
 gi|448875333|gb|EMB10353.1| arginyl-tRNA ligase [Klebsiella pneumoniae hvKP1]
          Length = 577

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 210/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 187/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL    + V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELENLAKVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R AGI+
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGID 477



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL    + V  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELENLAKVVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AGI+      A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAGIDEN----AMIDAPVVIAEDREAQLAARLLQFEETLSVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKE 127


>gi|409395518|ref|ZP_11246588.1| arginyl-tRNA ligase [Pseudomonas sp. Chol1]
 gi|409395616|ref|ZP_11246679.1| arginyl-tRNA ligase [Pseudomonas sp. Chol1]
 gi|409119771|gb|EKM96146.1| arginyl-tRNA ligase [Pseudomonas sp. Chol1]
 gi|409119900|gb|EKM96272.1| arginyl-tRNA ligase [Pseudomonas sp. Chol1]
          Length = 579

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 147/380 (38%), Positives = 218/380 (57%), Gaps = 43/380 (11%)

Query: 230 TASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSL 289
           T  V +T +K     GDF  N AM L K    K     P ++A+ +       +A  P  
Sbjct: 29  TIQVENTKDK---SHGDFASNIAMMLAKPAGLK-----PRELAEKL-------IAALPQD 73

Query: 290 AKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKL----RVLVDFSSPNI 345
           A+V  K+E+A PGF+N F +     E+++  + +   P    +K+    RV++D SSPN+
Sbjct: 74  AQV-SKVEIAGPGFLNFFQNTAALAERLEAALAD---PQLAVRKVGAAQRVVIDLSSPNL 129

Query: 346 AKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKS 405
           AKEMHVGHLRSTIIGD ++R+L +LG DV+R NHVGDWGTQFGML+A+L+++        
Sbjct: 130 AKEMHVGHLRSTIIGDAVARVLTFLGDDVIRQNHVGDWGTQFGMLLAYLEEQPA---AAE 186

Query: 406 PPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIY 465
             +ADL+ FY+ +KKRFDE   F  RA + VV LQ  D +  + W+   DVS    Q +Y
Sbjct: 187 SELADLEQFYRAAKKRFDESAEFADRARELVVRLQAGDAECLRLWQRFNDVSLSHCQAVY 246

Query: 466 DRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMT 517
           DRL V+L+    +GES Y   +  +V  L  KGLL  DDG + ++       +   +P+ 
Sbjct: 247 DRLGVSLSPADVKGESAYNAELPGIVEALRAKGLLTEDDGAQCVFLDEFKNAEGNPLPVI 306

Query: 518 IVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLE 577
           + K+ GG+ Y T+DLAA+R R +   AD ++Y  D  Q +HF++  E       ++R   
Sbjct: 307 VQKAGGGYLYATTDLAAMRYRSQVLHADRVLYFVDQRQALHFQMAFE-------VARRAG 359

Query: 578 YLGHDVVRLNHVGDWGTQFG 597
           ++ HD ++L H+G +GT  G
Sbjct: 360 FV-HDGMQLEHMG-FGTMNG 377



 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 136/350 (38%), Positives = 195/350 (55%), Gaps = 56/350 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+L +LG DV+R NHVGDWGTQFGML+A+L+++          +ADL+ FY
Sbjct: 140 STIIGDAVARVLTFLGDDVIRQNHVGDWGTQFGMLLAYLEEQPA---AAESELADLEQFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  D +  + W+   DVS    Q +YDRL V+L+  
Sbjct: 197 RAAKKRFDESAEFADRARELVVRLQAGDAECLRLWQRFNDVSLSHCQAVYDRLGVSLSPA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   +  +V  L  KG L+                       + +K G     
Sbjct: 257 DVKGESAYNAELPGIVEALRAKGLLTEDDGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF++  E A++AG ++ +  +++ +GFG +
Sbjct: 317 ATTDLAAMRYRSQVLHADRVLYFVDQRQALHFQMAFEVARRAGFVH-DGMQLEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+   +K+KN   EL  +EL +  +AV    +K
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLDEAEQRAYSLVKEKN--PELDESELRQIARAVGISAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS +R  DY F+F+ ML   GNTA YLLYAYTR+AS+ R  G  S++
Sbjct: 434 YADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYTRVASVFRKLGKGSDE 483



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 101/176 (57%), Gaps = 11/176 (6%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   +K+KN   EL  +EL +  +AV    +KYADLS +R  DY F+F+ ML   GNT
Sbjct: 402  QRAYSLVKEKN--PELDESELRQIARAVGISAVKYADLSKHRTSDYRFNFELMLSFEGNT 459

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYAYTR+AS+ R  G  S+++     +  + LE E+E ALA  L +  +VL  V  
Sbjct: 460  APYLLYAYTRVASVFRKLGKGSDEI-----TGHIRLEAEQELALAARLAQFGEVLNNVAA 514

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
                H LC YLYD++  FS FY++C  +  D   +  +    RL LA  T K +K+
Sbjct: 515  KGEPHQLCSYLYDLAGLFSSFYEHCPILGADQPEQKDS----RLRLAALTGKTLKQ 566


>gi|378580628|ref|ZP_09829285.1| arginyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
 gi|377816952|gb|EHU00051.1| arginyl-tRNA synthetase [Pantoea stewartii subsp. stewartii DC283]
          Length = 576

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/332 (39%), Positives = 194/332 (58%), Gaps = 34/332 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAETVIQ--------HLDLTGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII------VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL R +  +  +  +      VN V+P T      ++VD+S+PN+AKEMHVGH+RS
Sbjct: 82  FINIFLDRQWLADHARQALNHPRLGVNPVEPQT------IVVDYSAPNVAKEMHVGHVRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+
Sbjct: 136 TIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAFLEKQQNENHAEM-ALADLEGFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-- 474
           E+K+ +DED  F +RA   VV LQ  D   ++ W+ + D++    Q IY+RLNVTLT   
Sbjct: 195 EAKRTYDEDPEFAERARGYVVKLQGGDDYCRQMWKKLVDITMTQNQHIYNRLNVTLTRDD 254

Query: 475 -RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   + ++V  L+ KGL    +G  +++ E   ++   PM ++  K DGG+ Y 
Sbjct: 255 VMGESLYNDMLPEIVADLKAKGLAVESEGATVVFLEEFQNKEGEPMGVIIQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           T+D+A  R R E   AD ++Y  D  Q  H +
Sbjct: 315 TTDIACARYRYETLHADRVIYYIDSRQHQHLQ 346



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/349 (38%), Positives = 191/349 (54%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAFLEKQQNENHAEM-ALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K+ +DED  F +RA   VV LQ  D   ++ W+ + D++    Q IY+RLNVTLT  
Sbjct: 194 REAKRTYDEDPEFAERARGYVVKLQGGDDYCRQMWKKLVDITMTQNQHIYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + ++V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPEIVADLKAKGLAVESEGATVVFLEEFQNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H +      +KAG + P    ++   FG++
Sbjct: 314 TTTDIACARYRYETLHADRVIYYIDSRQHQHLQQAWTIVRKAGYV-PASVPLEHHAFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T+KLS+LLDE   R+   +++KN   ++T  E+S   + V    +K
Sbjct: 373 LGKDGRPFKTRSGGTIKLSDLLDEAYERAYTLVREKN--PDMTEEEVSTLAEVVGISAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI+++
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIDAD 479



 Score =  123 bits (308), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   +++KN   ++T  E+S   + V    +KYADLS +R  DY+F +D ML   GNTA
Sbjct: 400  RAYTLVREKN--PDMTEEEVSTLAEVVGISAVKYADLSKSRTTDYIFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ S+ R AGI+++     A    + L  ++E  LA  LL+  +V+  V RD
Sbjct: 458  PYMQYAYTRVLSVFRKAGIDAD-----AIQAEIVLTDDREALLATRLLQFEEVITQVARD 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  + +         RL +A  TAK +K   D L
Sbjct: 513  GTPHVMCAYLYDLAGLFSGFYEHCPILAAEDD----VTRLSRLQIAALTAKTLKLGLDTL 568

Query: 1112 NIRTVHKM 1119
             I+TV +M
Sbjct: 569  GIKTVDRM 576



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 25/112 (22%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAETVIQ--------HLDLTGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII------VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL R +  +  +  +      VN V+P T      ++VD+S+PN+A++
Sbjct: 82  FINIFLDRQWLADHARQALNHPRLGVNPVEPQT------IVVDYSAPNVAKE 127


>gi|386035526|ref|YP_005955439.1| arginyl-tRNA synthetase [Klebsiella pneumoniae KCTC 2242]
 gi|424831318|ref|ZP_18256046.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           Ecl8]
 gi|339762654|gb|AEJ98874.1| arginyl-tRNA synthetase [Klebsiella pneumoniae KCTC 2242]
 gi|414708752|emb|CCN30456.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           Ecl8]
          Length = 577

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 210/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/347 (40%), Positives = 187/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL    + V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELENLAKVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R AGIN
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIN 477



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL    + V  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELENLAKVVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AGIN      A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAGINEN----AMIDAPVVIAEDREAQLAARLLQFEETLCVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + +   + +   GV  P   +   ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKP---QAQTIVVDYSAPNVAKE 127


>gi|206576111|ref|YP_002237735.1| arginyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|288934593|ref|YP_003438652.1| arginyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|238065091|sp|B5XPZ2.1|SYR_KLEP3 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|206565169|gb|ACI06945.1| arginyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|288889302|gb|ADC57620.1| arginyl-tRNA synthetase [Klebsiella variicola At-22]
          Length = 577

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 210/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDQYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 366

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 367 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 187/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDQYFLQMWRKLVDITMSQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL    + V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELENLAKVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R AGI+
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGID 477



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL    + V  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELENLAKVVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AGI+      A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAGIDEN----AMNDAPVVIAEDREAQLAARLLQFEETLSVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKE 127


>gi|218689874|ref|YP_002398086.1| arginyl-tRNA synthetase [Escherichia coli ED1a]
 gi|254782963|sp|B7MW70.1|SYR_ECO81 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|218427438|emb|CAR08336.2| arginyl-tRNA synthetase [Escherichia coli ED1a]
          Length = 577

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 210/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFHEMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 185/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFHEMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|432517945|ref|ZP_19755137.1| arginyl-tRNA synthetase [Escherichia coli KTE228]
 gi|433158909|ref|ZP_20343756.1| arginyl-tRNA synthetase [Escherichia coli KTE177]
 gi|431051993|gb|ELD61655.1| arginyl-tRNA synthetase [Escherichia coli KTE228]
 gi|431678943|gb|ELJ44861.1| arginyl-tRNA synthetase [Escherichia coli KTE177]
          Length = 577

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNSIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNSIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|359434227|ref|ZP_09224505.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. BSi20652]
 gi|357919110|dbj|GAA60754.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. BSi20652]
          Length = 580

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/357 (38%), Positives = 201/357 (56%), Gaps = 60/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD+I R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   S  
Sbjct: 133 HLR----STIIGDSIVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDSVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y R
Sbjct: 189 LADLETFYRDAKKRFDDEEGFADKARDYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYTR 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSL------------------------- 708
           LNVTLT+     ES Y   +  ++  L+ K N+++                         
Sbjct: 249 LNVTLTQADIMAESAYNAELNDIISLLKDK-NIAVESQGAQVVFLDELANKDGEPSAFIV 307

Query: 709 --------------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                               + KLG   I+   D  Q +HF  +E  A+KAG+L  ++T 
Sbjct: 308 QKSGGGFLYATTDLAACDYRSNKLGADRILIFVDARQNLHFNQVELTARKAGLLR-DETS 366

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805
            +F  FG ++G D K FKTR+G TVKL++LL+E + R+  KL +  R ++L+ +E SE  
Sbjct: 367 YEFCPFGTMMGADNKPFKTRTGGTVKLADLLEESINRAAIKLAE--RESDLSDSERSEIA 424

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           + V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTR+ SI R +G+++
Sbjct: 425 RKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRVRSIFRKSGVDA 481



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 188/336 (55%), Gaps = 33/336 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K  K      NP ++AQ I          N  ++ +  K E+A PG
Sbjct: 35  QFGDYQINAAMGAAKKMK-----SNPRELAQKIID--------NLDVSDIAQKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIK------DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+ L   +  + +K       + VN    P      +V+VD+SSPN+AKEMHVGHLRS
Sbjct: 82  FINIHLKPEFLAQSVKAANSDAKLAVNEHANPQ-----KVVVDYSSPNLAKEMHVGHLRS 136

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFY 415
           TIIGD+I R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   S  +ADL+ FY
Sbjct: 137 TIIGDSIVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDSVALADLETFY 196

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           +++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y RLNVTLT+ 
Sbjct: 197 RDAKKRFDDEEGFADKARDYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYTRLNVTLTQA 256

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
               ES Y   +  ++  L+ K +     G ++++      +D       + KS GGF Y
Sbjct: 257 DIMAESAYNAELNDIISLLKDKNIAVESQGAQVVFLDELANKDGEPSAFIVQKSGGGFLY 316

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
            T+DLAA   R  +  AD I+   D  Q +HF  +E
Sbjct: 317 ATTDLAACDYRSNKLGADRILIFVDARQNLHFNQVE 352



 Score =  106 bits (264), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 113/192 (58%), Gaps = 10/192 (5%)

Query: 930  LRRSLDK--LKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDR 987
            L  S+++  +K   R ++L+ +E SE  + V  G +KYADLS +R  DY+F++D ML   
Sbjct: 397  LEESINRAAIKLAERESDLSDSERSEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFE 456

Query: 988  GNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLML 1047
            G TA YL YAYTR+ SI R +G+++  L     ++ V++   +E ALA  LL++ +VL L
Sbjct: 457  GATAPYLQYAYTRVRSIFRKSGVDAATL-----NSDVAIIEPQEKALALKLLQLEEVLDL 511

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
            +  +   H LC YLY++++ +  FY+ C  ++   EG   +V   RL+L    ++ ++  
Sbjct: 512  MISEATPHVLCGYLYELASLYMTFYEACPVLK---EGVEPSVRDSRLVLCNLVSRTLETG 568

Query: 1108 FDILNIRTVHKM 1119
             D+L I  + +M
Sbjct: 569  LDLLGIEVMEQM 580



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 26/133 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K  K      NP ++AQ I          N  ++ +  K E A PG
Sbjct: 35  QFGDYQINAAMGAAKKMK-----SNPRELAQKIID--------NLDVSDIAQKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMK------DIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+ L   +  + +K       + VN    P      +V+VD+SSPN+A++      HL
Sbjct: 82  FINIHLKPEFLAQSVKAANSDAKLAVNEHANPQ-----KVVVDYSSPNLAKE--MHVGHL 134

Query: 161 PSQIHDILISKAI 173
            S I    I +A+
Sbjct: 135 RSTIIGDSIVRAL 147


>gi|398845494|ref|ZP_10602525.1| arginyl-tRNA synthetase [Pseudomonas sp. GM84]
 gi|398253525|gb|EJN38651.1| arginyl-tRNA synthetase [Pseudomonas sp. GM84]
          Length = 578

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 207/370 (55%), Gaps = 51/370 (13%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K     G K  P D+A+ + + +       P+ A  I K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKLINAL-------PASAD-ISKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLR 355
           N F        Q  D + N +     +  L         +V++D S+PN+AKEMHVGHLR
Sbjct: 88  NFF--------QNTDALANRLDAALADAHLGARKAGPAQKVVIDMSAPNLAKEMHVGHLR 139

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415
           STIIGD+++R+LE+LG  V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDQVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           + +KKRFDE E F  RA   VV LQ  DPD    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPDCMALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
              GES Y   +  ++  L+ KGLL  D G + ++       +   +P+ + K+DGG+ Y
Sbjct: 256 DVMGESAYNDDLANVISDLKAKGLLVEDQGAQCVFLDEFKNSEGEPLPVIVQKADGGYLY 315

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            T+DLAA+R R    KAD  +Y  D  Q +HF  + E       ++R   ++GH  +++ 
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFE-------VARRAGFVGHP-MQME 367

Query: 588 HVGDWGTQFG 597
           H+G +GT  G
Sbjct: 368 HMG-FGTMNG 376



 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 182/345 (52%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++R+LE+LG  V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDQVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  DPD    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPDCMALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  ++  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLANVISDLKAKGLLVEDQGAQCVFLDEFKNSEGEPLPVIVQKADGGYLY 315

Query: 707 ------------SLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                       ++ K    +Y  D  Q +HF  + E A++AG +  +  +M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFEVARRAGFVG-HPMQMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN    L   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAKDRAYALVKEKN--PSLAEDELRHIGEVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 91/167 (54%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++  L   EL    + V  G +KYADLS +R  DY F+F+ ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPSLAEDELRHIGEVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G   +++     S  +   HE++  LA  L +  ++L  V      H LC 
Sbjct: 468  RVAGVFRKLGKGFDEVE---GSIVLQAPHEQD--LAARLAQFGEILNNVAEKGTPHVLCS 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+
Sbjct: 523  YLYDLAGLFSSFYENCPILAAETPEQQQS----RLRLAALTGRTLKQ 565


>gi|419952431|ref|ZP_14468578.1| arginyl-tRNA ligase [Pseudomonas stutzeri TS44]
 gi|387970476|gb|EIK54754.1| arginyl-tRNA ligase [Pseudomonas stutzeri TS44]
          Length = 579

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 216/381 (56%), Gaps = 45/381 (11%)

Query: 230 TASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSL 289
           T  V +T +K     GDF  N AM L K    K     P ++A+ +       +A  P  
Sbjct: 29  TIQVENTKDK---SHGDFASNIAMMLAKPAGLK-----PRELAEKL-------IAALPQD 73

Query: 290 AKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTL-----NKKLRVLVDFSSPN 344
           A+V  K+E+A PGF+N F +     E+++  + +    P L         RV++D SSPN
Sbjct: 74  AQV-SKVEIAGPGFLNFFQNTAALAERLEAALAD----PQLTVCKAGAAQRVVIDLSSPN 128

Query: 345 IAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 404
           +AKEMHVGHLRSTIIGD ++R+L +LG DV+R NHVGDWGTQFGML+A+L+++       
Sbjct: 129 LAKEMHVGHLRSTIIGDAVARVLAFLGDDVIRQNHVGDWGTQFGMLLAYLEEQPA---AA 185

Query: 405 SPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKI 464
              +ADL+ FY+ +KKRFDE   F  RA + VV LQ  D +  + W+   DVS    Q +
Sbjct: 186 ESELADLEQFYRAAKKRFDESTGFADRARELVVRLQAGDTECLRLWQRFNDVSLSHCQAV 245

Query: 465 YDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPM 516
           YDRL V+L+    +GES Y   +  +V  L  KGLL  DDG + ++       +   +P+
Sbjct: 246 YDRLGVSLSPADVKGESAYNAELPGIVEALRAKGLLTEDDGAQCVFLDEFKNAEGNPLPV 305

Query: 517 TIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLL 576
            + K+ GG+ Y T+DLAA+R R E   AD ++Y  D  Q +HF++  E       ++R  
Sbjct: 306 IVQKAGGGYLYATTDLAAMRYRSEVLHADRVLYFVDQRQALHFQMAFE-------VARRA 358

Query: 577 EYLGHDVVRLNHVGDWGTQFG 597
            ++ HD ++L H+G +GT  G
Sbjct: 359 GFV-HDGMQLEHMG-FGTMNG 377



 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 192/345 (55%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+L +LG DV+R NHVGDWGTQFGML+A+L+++          +ADL+ FY
Sbjct: 140 STIIGDAVARVLAFLGDDVIRQNHVGDWGTQFGMLLAYLEEQPA---AAESELADLEQFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  D +  + W+   DVS    Q +YDRL V+L+  
Sbjct: 197 RAAKKRFDESTGFADRARELVVRLQAGDTECLRLWQRFNDVSLSHCQAVYDRLGVSLSPA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   +  +V  L  KG L+                       + +K G     
Sbjct: 257 DVKGESAYNAELPGIVEALRAKGLLTEDDGAQCVFLDEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF++  E A++AG ++ +  +++ +GFG +
Sbjct: 317 ATTDLAAMRYRSEVLHADRVLYFVDQRQALHFQMAFEVARRAGFVH-DGMQLEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+   +K+KN   EL  +EL +  +AV    +K
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLDEAEQRAYSLVKEKN--PELDESELRQIARAVGISAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML   GNTA YLLYAYTR+AS+ R  G
Sbjct: 434 YADLSKHRTSDYRFNFELMLSFEGNTAPYLLYAYTRVASVFRKLG 478



 Score =  113 bits (283), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 11/176 (6%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   +K+KN   EL  +EL +  +AV    +KYADLS +R  DY F+F+ ML   GNT
Sbjct: 402  QRAYSLVKEKN--PELDESELRQIARAVGISAVKYADLSKHRTSDYRFNFELMLSFEGNT 459

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYAYTR+AS+ R  G   ++      +  + LE E+E ALA  L +  +VL  V  
Sbjct: 460  APYLLYAYTRVASVFRKLGKGIDE-----TAGHIRLEAEQELALAARLAQFGEVLNNVAA 514

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
                H LC YLYD++  FS FY++C  +  D   +  +    RL LA  T K +K+
Sbjct: 515  KGEPHQLCSYLYDLAGLFSSFYEHCPILGADQPEQKDS----RLRLAALTGKTLKQ 566


>gi|336314889|ref|ZP_08569803.1| arginyl-tRNA synthetase [Rheinheimera sp. A13L]
 gi|335880716|gb|EGM78601.1| arginyl-tRNA synthetase [Rheinheimera sp. A13L]
          Length = 579

 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/373 (37%), Positives = 209/373 (56%), Gaps = 35/373 (9%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M++++ LS   T A  +A     D   +V  + +    +FGD+Q N AMA  K+ K    
Sbjct: 1   MNIKELLS-AKTQAAMLALGLPADTNTAVTISTKV---EFGDYQINGAMAAAKLLK---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
             NP  +AQ        +L     LA++ +K+E+A PGF+NV L + +   Q+    V  
Sbjct: 53  -TNPRALAQ--------QLVQQLDLAELAEKVEIAGPGFINVTLRKDWLAAQL----VGA 99

Query: 325 VQPPTLNKKLR-----VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
            Q P L          V+VD+S+PN+AKEMHVGHLRSTIIGD + R LE+ G  V+R NH
Sbjct: 100 SQNPRLTLSANPAPQTVVVDYSAPNLAKEMHVGHLRSTIIGDAVVRCLEFWGDKVIRQNH 159

Query: 380 VGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           +GDWGTQFGMLIAHL+DK    +  +   +ADL+ FY+E+KKRFD++  F  ++   VV 
Sbjct: 160 MGDWGTQFGMLIAHLEDKLAAGIDLEQVALADLEDFYREAKKRFDDEAGFADKSRDYVVK 219

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   +K W++  D S +   ++Y  L VTL     + ES Y   ++ +V  L+++G
Sbjct: 220 LQSGDAHCQKLWQLFIDTSIKHSDEVYKTLKVTLGHEHIKPESAYNAMLQPIVDSLKQQG 279

Query: 496 LLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L    +G  +++ ++         P  + K+ GGF Y T+DLAA + R  +  AD IV  
Sbjct: 280 LAVESEGALVVFLQELADKEGNPSPFIVQKTGGGFLYATTDLAACQYRSFDLAADRIVIF 339

Query: 551 TDLGQGVHFRLLE 563
           TD  Q +HF+ +E
Sbjct: 340 TDARQALHFKQVE 352



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/355 (39%), Positives = 196/355 (55%), Gaps = 58/355 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD + R LE+ G  V+R NH+GDWGTQFGMLIAHL+DK    +  +   
Sbjct: 133 HLR----STIIGDAVVRCLEFWGDKVIRQNHMGDWGTQFGMLIAHLEDKLAAGIDLEQVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+E+KKRFD++  F  ++   VV LQ  D   +K W++  D S +   ++Y  
Sbjct: 189 LADLEDFYREAKKRFDDEAGFADKSRDYVVKLQSGDAHCQKLWQLFIDTSIKHSDEVYKT 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYL---------------------EKKGNLS--LTK 710
           L VTL     + ES Y   ++ +V  L                     +K+GN S  + +
Sbjct: 249 LKVTLGHEHIKPESAYNAMLQPIVDSLKQQGLAVESEGALVVFLQELADKEGNPSPFIVQ 308

Query: 711 KLG------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRM 746
           K G                        IV  TD  Q +HF+ +E  A+KAG+L  +    
Sbjct: 309 KTGGGFLYATTDLAACQYRSFDLAADRIVIFTDARQALHFKQVELVARKAGLLK-DHVAY 367

Query: 747 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ 806
           D   FG ++GED K FKTR+G TVKL+ELL+E + R+   ++ K+  ++L+  E++E  +
Sbjct: 368 DHCPFGTMMGEDGKPFKTRTGGTVKLAELLEEAVVRAQAVVEQKS--SDLSAEEMAEVAR 425

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            V  G +K+ADLS NR  DYVFS+D ML   G TA YL YAYTR++ I R AGI+
Sbjct: 426 KVGIGAVKFADLSKNRTSDYVFSWDAMLSFEGATAPYLQYAYTRVSGILRRAGID 480



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 105/180 (58%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + ++L+  E++E  + V  G +K+ADLS NR  DYVFS+D ML   G TA YL YAYT
Sbjct: 409  EQKSSDLSAEEMAEVARKVGIGAVKFADLSKNRTSDYVFSWDAMLSFEGATAPYLQYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R++ I R AGI+   +       P+ L  E+E  LA  LLR+ + L  V +D   + LC 
Sbjct: 469  RVSGILRRAGIDESFV------APLQLVEEQEKQLAVKLLRLEETLQAVMKDAVPNLLCN 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++S+ F  FY+ C  +++  E  +K     RL+L+   A+ +K+  D+L I  + +M
Sbjct: 523  YLYELSSQFMSFYEACPILKEGIEPDLK---NSRLMLSILVARTLKQGLDLLGIEVMERM 579



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 26/149 (17%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M++++ LS   T A  +A     D   +V  + +    +FGD+Q N AMA  K+ K    
Sbjct: 1   MNIKELLS-AKTQAAMLALGLPADTNTAVTISTKV---EFGDYQINGAMAAAKLLK---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
             NP  +AQ        +L     LA++ +K+E A PGF+NV L + +   Q+    V  
Sbjct: 53  -TNPRALAQ--------QLVQQLDLAELAEKVEIAGPGFINVTLRKDWLAAQL----VGA 99

Query: 129 VQPPTLNKKLR-----VLVDFSSPNIARK 152
            Q P L          V+VD+S+PN+A++
Sbjct: 100 SQNPRLTLSANPAPQTVVVDYSAPNLAKE 128


>gi|292488556|ref|YP_003531440.1| arginyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|292899728|ref|YP_003539097.1| arginyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|428785497|ref|ZP_19002988.1| arginyl-tRNA synthetase [Erwinia amylovora ACW56400]
 gi|291199576|emb|CBJ46693.1| arginyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291553987|emb|CBA21032.1| Arginyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|312172701|emb|CBX80957.1| Arginyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
 gi|426277059|gb|EKV54786.1| arginyl-tRNA synthetase [Erwinia amylovora ACW56400]
          Length = 576

 Score =  230 bits (586), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 140/378 (37%), Positives = 216/378 (57%), Gaps = 40/378 (10%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+ VA     D    V  + +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQAM-VAVGAPADSEPQVRQSAKA---QFGDYQANGIMAVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +   +         L  +  K+++A PGF+N+FL+  +   QI  ++   
Sbjct: 53  -MPPRQLAEKVLEQL--------DLNGIAHKVDIAGPGFINIFLAPQWLSAQIDSVLTAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              V+ V+P T      V++D+S+PN+AKEMHVGH+RSTIIGD  +R L +LGH V+R N
Sbjct: 104 KLGVSPVEPET------VVIDYSAPNVAKEMHVGHVRSTIIGDAAARTLAFLGHKVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ +  ++  ++  +ADL+AFY+E+K+ +DED  F  RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLEKQQNEH-HEAIALADLEAFYREAKRTYDEDPAFAARARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   +K W+ + D++    Q IYDR+NVTLT     GES Y   +  +V  L+ KG
Sbjct: 217 LQSGDRYCRKMWKQLVDITMTQNQLIYDRMNVTLTRDDVMGESLYNDMLPAIVSDLKAKG 276

Query: 496 LLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L    +G  +++ +   ++   PM ++  K DGG+ Y T+D+A  + R E  KAD ++Y 
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVIVQKKDGGYLYTTTDIACAKYRYETLKADRVLYY 336

Query: 551 TDLGQGVHFRLLEESTII 568
            D  Q  H  L++  TI+
Sbjct: 337 IDSRQ--HQHLMQAWTIV 352



 Score =  222 bits (566), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 190/349 (54%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R L +LGH V+R NHVGDWGTQFGMLIA+L+ +  ++  ++  +ADL+AFY
Sbjct: 135 STIIGDAAARTLAFLGHKVIRANHVGDWGTQFGMLIAYLEKQQNEH-HEAIALADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K+ +DED  F  RA   VV LQ  D   +K W+ + D++    Q IYDR+NVTLT  
Sbjct: 194 REAKRTYDEDPAFAARARGYVVKLQSGDRYCRKMWKQLVDITMTQNQLIYDRMNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPAIVSDLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIVQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLKADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSIPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T+KLS+LLDE + R+   +  KN   ++   EL+     V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTIKLSDLLDEAVDRAAKLVAVKN--PDMPADELAALANIVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI++E
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIDAE 479



 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 102/178 (57%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL+     V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELAALANIVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AGI++E     A      +  ++E ALA  LL+ ++ +  V RD   H +C YL
Sbjct: 468  LSVFRKAGIDAE-----AVGGTTRIIEDREAALAVRLLQFDETITQVARDGMPHVMCAYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  + +   ++    RL LA  TAK +K+  D L I TV +M
Sbjct: 523  YDLAGLFSGFYEHCPILNAEDDATRQS----RLRLALLTAKTLKQGLDTLGIETVERM 576



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+ VA     D    V  + +    +FGD+Q N  MA+ K       
Sbjct: 1   MNIQALLSEKVSQAM-VAVGAPADSEPQVRQSAKA---QFGDYQANGIMAVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +   +         L  +  K++ A PGF+N+FL+  +   Q+  ++   
Sbjct: 53  -MPPRQLAEKVLEQL--------DLNGIAHKVDIAGPGFINIFLAPQWLSAQIDSVLTAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              V+ V+P T      V++D+S+PN+A++
Sbjct: 104 KLGVSPVEPET------VVIDYSAPNVAKE 127


>gi|330001087|ref|ZP_08303897.1| arginine--tRNA ligase, partial [Klebsiella sp. MS 92-3]
 gi|328537789|gb|EGF63987.1| arginine--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 561

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 210/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E+A PG
Sbjct: 19  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 65

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 66  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKEMHVGHLRSTII 122

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 123 GDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 181

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 182 KHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMG 241

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 242 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 298

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 299 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH 350

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
                  FGM++      F      +  +ADL
Sbjct: 351 -----HMFGMMLGKDGKPFKTRAGGTVKLADL 377



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 187/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 119 STIIGDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 177

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT  
Sbjct: 178 REAKKHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRD 237

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 238 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 297

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 298 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 356

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL    + V  G +K
Sbjct: 357 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELENLAKVVGIGAVK 414

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R AGI+
Sbjct: 415 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGID 461



 Score =  130 bits (326), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL    + V  G +KYADLS NR  DYVF +D ML   G
Sbjct: 381  ALERARRLVAEKN--PDMSADELENLAKVVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 438

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AGI+      A    PV +  ++E  LA  LL+  + L +V
Sbjct: 439  NTAPYMQYAYTRVLSVFRKAGIDEN----AMIDAPVVIAEDREAQLAARLLQFEETLSVV 494

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 495  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 550

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 551  DTLGIETVERM 561



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E A PG
Sbjct: 19  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 65

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+A++
Sbjct: 66  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKE 111


>gi|325265599|ref|ZP_08132290.1| arginine--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324982947|gb|EGC18568.1| arginine--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 567

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 138/346 (39%), Positives = 189/346 (54%), Gaps = 57/346 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+++R+L +LGH V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 130 SSIIGDSLARVLGFLGHKVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 187

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   + + VV LQ  D      W    ++S +  +K+Y +L + L ER
Sbjct: 188 RAAKVRFDEDAAFADLSREYVVKLQGGDEAVLALWRQFVEISLQHAEKVYAKLGLLL-ER 246

Query: 685 G----ESFYQKHMEQLVPYLEKKG------------------------------------ 704
           G    ES Y   +  +V  LE KG                                    
Sbjct: 247 GDVAGESKYNDDLHNVVKELEAKGLVVDSDGAKVVFLDEFKNKDGEPAAFIVQKQGGGFL 306

Query: 705 -----------NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                       L++ K   ++YV D  Q +HF+ L   A+KAG L P     +FVGFG 
Sbjct: 307 YATTDLACLRYRLNMLKANRLLYVVDTRQDLHFKELFVTARKAGWL-PENVSAEFVGFGT 365

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           ++G+D K FKTRSGDTVKL +LLDE + R+   ++ KN   +L+  E ++  Q V  G +
Sbjct: 366 MMGKDNKPFKTRSGDTVKLVDLLDEAVERATQLVRSKN--PDLSEAEAAKIGQTVGIGAV 423

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           KYADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 424 KYADLSKNRTSDYVFDWDNMLSFEGNTAPYLQYAYTRVQSVFRKAG 469



 Score =  211 bits (537), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/328 (40%), Positives = 191/328 (58%), Gaps = 29/328 (8%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGDFQ N AM   K       K+NP ++AQ IA     EL    + A      EVA PGF
Sbjct: 35  FGDFQINGAMGAAKA-----AKQNPRELAQKIAD----ELNGKGAFAVA----EVAGPGF 81

Query: 304 VNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 363
           +N+ LS  +   Q++  + +  Q P  +    V++D+SSPN+AKEMHVGHLRS+IIGD++
Sbjct: 82  INLRLSPEFLAAQLEGSL-HIAQTPNPDT---VVIDYSSPNLAKEMHVGHLRSSIIGDSL 137

Query: 364 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 423
           +R+L +LGH V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K RFD
Sbjct: 138 ARVLGFLGHKVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRAAKVRFD 195

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER----GESF 479
           ED  F   + + VV LQ  D      W    ++S +  +K+Y +L + L ER    GES 
Sbjct: 196 EDAAFADLSREYVVKLQGGDEAVLALWRQFVEISLQHAEKVYAKLGL-LLERGDVAGESK 254

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  LE KGL+   DG K+++      +D       + K  GGF Y T+DLA 
Sbjct: 255 YNDDLHNVVKELEAKGLVVDSDGAKVVFLDEFKNKDGEPAAFIVQKQGGGFLYATTDLAC 314

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           +R R+   KA+ ++YV D  Q +HF+ L
Sbjct: 315 LRYRLNMLKANRLLYVVDTRQDLHFKEL 342



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 90/166 (54%), Gaps = 12/166 (7%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ +L+  E ++  Q V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 400  RSKNPDLSEAEAAKIGQTVGIGAVKYADLSKNRTSDYVFDWDNMLSFEGNTAPYLQYAYT 459

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG    D  V A      L    E  LA  LL+  DVL  V      H+L  
Sbjct: 460  RVQSVFRKAG----DWDVQA---AFVLTEPLEQQLAVELLKFEDVLQSVAETNFPHYLAA 512

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
            YLY ++T FS FY+ C  ++  AEG  +     RL LA  T + +K
Sbjct: 513  YLYQLATLFSRFYEACPILK--AEGAARDT---RLNLARLTGETLK 553



 Score = 41.6 bits (96), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 17/105 (16%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGDFQ N AM   K       K+NP ++AQ IA     EL    + A      E A PGF
Sbjct: 35  FGDFQINGAMGAAKA-----AKQNPRELAQKIA----DELNGKGAFAVA----EVAGPGF 81

Query: 108 VNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           +N+ LS  +   Q++  + +  Q P  +    V++D+SSPN+A++
Sbjct: 82  INLRLSPEFLAAQLEGSL-HIAQTPNPDT---VVIDYSSPNLAKE 122


>gi|85711525|ref|ZP_01042583.1| arginyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85694677|gb|EAQ32617.1| arginyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 580

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 208/364 (57%), Gaps = 37/364 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N A+ L K       K NP  +A+ +   + +          +I K ++A PGF+
Sbjct: 41  GDFASNLALMLAK-----PAKMNPRQLAEKVIEAIPAN--------TLIAKTDIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N  +++     Q+  ++ +   G+QP    K + +++D+SSPN+AKEMHVGHLRS IIGD
Sbjct: 88  NFTIAQDQLKSQLTTMLSSADLGIQPA--EKPMTIVIDYSSPNLAKEMHVGHLRSAIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            +SR  E LGH V+R NHVGDWGTQFGML+AH+++   D    +  +++L+ FYK +KKR
Sbjct: 146 AVSRTAEMLGHKVIRQNHVGDWGTQFGMLLAHMEE--LDSEAANYELSNLETFYKAAKKR 203

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE E F +RA + VV LQ  D    K W    DVS    Q++YDRL V LT      ES
Sbjct: 204 FDESEDFAERARELVVKLQSGDDYCLKLWNQFIDVSLAHCQEVYDRLGVKLTRDDVMAES 263

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   +  ++ +L+++GLL  D G + ++     G++   +P+ + K  GG+ Y T+DLA
Sbjct: 264 AYNDRLPGVIEHLKQQGLLVEDQGAQCVFLDEFKGKEGEPLPIIVQKKGGGYLYATTDLA 323

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
           AI+ R +E   D+++Y  D  Q +HF  +        T++R  +++  D ++  H G +G
Sbjct: 324 AIQYRQKELGGDYLMYFVDARQSLHFEQIF-------TLARKAKFIEGD-IKTQHYG-FG 374

Query: 594 TQFG 597
           T  G
Sbjct: 375 TVMG 378



 Score =  211 bits (536), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/350 (37%), Positives = 183/350 (52%), Gaps = 55/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S IIGD +SR  E LGH V+R NHVGDWGTQFGML+AH+++   D    +  +++L+ FY
Sbjct: 140 SAIIGDAVSRTAEMLGHKVIRQNHVGDWGTQFGMLLAHMEE--LDSEAANYELSNLETFY 197

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           K +KKRFDE E F +RA + VV LQ  D    K W    DVS    Q++YDRL V LT  
Sbjct: 198 KAAKKRFDESEDFAERARELVVKLQSGDDYCLKLWNQFIDVSLAHCQEVYDRLGVKLTRD 257

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS---------------------------------- 707
               ES Y   +  ++ +L+++G L                                   
Sbjct: 258 DVMAESAYNDRLPGVIEHLKQQGLLVEDQGAQCVFLDEFKGKEGEPLPIIVQKKGGGYLY 317

Query: 708 ----------LTKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                       K+LG   ++Y  D  Q +HF  +   A+KA  +  +  +    GFG V
Sbjct: 318 ATTDLAAIQYRQKELGGDYLMYFVDARQSLHFEQIFTLARKAKFIEGD-IKTQHYGFGTV 376

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D + +K+R G   KL++LLDE  RR+L+ L+ KN  ++LT  +     + V    +K
Sbjct: 377 MGKDGRPYKSRDGGVTKLADLLDEAERRALELLQQKN--SDLTAEQQEAVAKVVGISSVK 434

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS NR  DY+F +D ML   GNTA YLLYA+TR+ SI    G  S D
Sbjct: 435 YADLSKNRTSDYIFDWDLMLTFEGNTAPYLLYAFTRVNSIFDKLGERSFD 484



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 103/189 (54%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            RR+L+ L+ KN  ++LT  +     + V    +KYADLS NR  DY+F +D ML   GNT
Sbjct: 403  RRALELLQQKN--SDLTAEQQEAVAKVVGISSVKYADLSKNRTSDYIFDWDLMLTFEGNT 460

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYA+TR+ SI    G  S D+          LE E+E ALA  L+R  +V+  V  
Sbjct: 461  APYLLYAFTRVNSIFDKLGERSFDM-----DADWLLEDERELALANQLIRFEEVVNRVFD 515

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H LC YL++++  FS FY+ C  + ++ E     V   RL LA  TA  ++K   +
Sbjct: 516  KAMPHFLCGYLFELAGYFSSFYEACPILNQEDEA----VRNSRLKLARLTANTLEKGLAL 571

Query: 1111 LNIRTVHKM 1119
            L I T+ KM
Sbjct: 572  LGIPTLEKM 580



 Score = 46.2 bits (108), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 18/107 (16%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N A+ L K       K NP  +A+ +   + +          +I K + A PGF+
Sbjct: 41  GDFASNLALMLAK-----PAKMNPRQLAEKVIEAIPAN--------TLIAKTDIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N  +++     Q+  ++ +   G+QP    K + +++D+SSPN+A++
Sbjct: 88  NFTIAQDQLKSQLTTMLSSADLGIQPA--EKPMTIVIDYSSPNLAKE 132


>gi|419232630|ref|ZP_13775410.1| arginyl-tRNA synthetase [Escherichia coli DEC9B]
 gi|419238092|ref|ZP_13780817.1| arginyl-tRNA synthetase [Escherichia coli DEC9C]
 gi|419243531|ref|ZP_13786172.1| arginyl-tRNA synthetase [Escherichia coli DEC9D]
 gi|378078496|gb|EHW40478.1| arginyl-tRNA synthetase [Escherichia coli DEC9B]
 gi|378084642|gb|EHW46544.1| arginyl-tRNA synthetase [Escherichia coli DEC9C]
 gi|378092139|gb|EHW53966.1| arginyl-tRNA synthetase [Escherichia coli DEC9D]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 210/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K               + +A  V + L  N     +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLGMA---------PRQLAEQVLTHLDPN----GIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYESLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYESLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K               + +A  V + L  N     +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLGMA---------PRQLAEQVLTHLDPN----GIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|359440746|ref|ZP_09230659.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. BSi20429]
 gi|392533212|ref|ZP_10280349.1| arginyl-tRNA ligase [Pseudoalteromonas arctica A 37-1-2]
 gi|358037452|dbj|GAA66908.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. BSi20429]
          Length = 580

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 139/357 (38%), Positives = 201/357 (56%), Gaps = 60/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD+I R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   S  
Sbjct: 133 HLR----STIIGDSIVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDSVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y R
Sbjct: 189 LADLETFYRDAKKRFDDEEGFADKARNYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKR 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSL------------------------- 708
           LNVTLT+     ES Y   +  ++  L+ K N+++                         
Sbjct: 249 LNVTLTQADIMAESAYNAELNDIISLLKDK-NIAVESQGAQVVFLDELANKDGEPSAFIV 307

Query: 709 --------------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                               + KLG   I+   D  Q +HF  +E  A+KAG+L  ++T 
Sbjct: 308 QKSGGGFLYATTDLAACDYRSNKLGADRILIFVDARQNLHFNQVELTARKAGLLR-DETS 366

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805
            +F  FG ++G D K FKTR+G TVKL++LL+E + R+  KL +  R ++L+ ++ SE  
Sbjct: 367 YEFCPFGTMMGADNKPFKTRTGGTVKLADLLEESINRAAAKLAE--RESDLSDSDRSEIA 424

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           + V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTRI SI R +G+++
Sbjct: 425 RKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRIRSIFRKSGVDA 481



 Score =  223 bits (567), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 188/336 (55%), Gaps = 33/336 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K  K      NP ++AQ I          N  ++ +  K E+A PG
Sbjct: 35  QFGDYQINAAMGAAKKMK-----SNPRELAQKIID--------NLDVSDIAQKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIK------DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+ L   +  + ++       + VN    P      +V+VD+SSPN+AKEMHVGHLRS
Sbjct: 82  FINIHLKPEFLAQSVQAANSDAKLAVNEHANPQ-----KVVVDYSSPNLAKEMHVGHLRS 136

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFY 415
           TIIGD+I R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   S  +ADL+ FY
Sbjct: 137 TIIGDSIVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDSVALADLETFY 196

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           +++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y RLNVTLT+ 
Sbjct: 197 RDAKKRFDDEEGFADKARNYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKRLNVTLTQA 256

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
               ES Y   +  ++  L+ K +     G ++++      +D       + KS GGF Y
Sbjct: 257 DIMAESAYNAELNDIISLLKDKNIAVESQGAQVVFLDELANKDGEPSAFIVQKSGGGFLY 316

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
            T+DLAA   R  +  AD I+   D  Q +HF  +E
Sbjct: 317 ATTDLAACDYRSNKLGADRILIFVDARQNLHFNQVE 352



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 112/190 (58%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            + R+  KL +  R ++L+ ++ SE  + V  G +KYADLS +R  DY+F++D ML   G 
Sbjct: 401  INRAAAKLAE--RESDLSDSDRSEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGA 458

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA YL YAYTRI SI R +G+++  L     ++ V++   +E ALA  LL++ +VL L+ 
Sbjct: 459  TAPYLQYAYTRIRSIFRKSGVDAATL-----NSDVAIIEPQEKALALKLLQLEEVLDLMI 513

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             +   H LC YLY++++ +  FY+ C  ++   EG   +V   RL+L    +K ++   D
Sbjct: 514  SEATPHVLCGYLYELASLYMTFYEACPVLK---EGVEPSVRDSRLVLCNLVSKTLETGLD 570

Query: 1110 ILNIRTVHKM 1119
            +L I  + +M
Sbjct: 571  LLGIEVMEQM 580



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 32/136 (23%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K  K      NP ++AQ I          N  ++ +  K E A PG
Sbjct: 35  QFGDYQINAAMGAAKKMK-----SNPRELAQKIID--------NLDVSDIAQKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKL---------RVLVDFSSPNIARKGGFLY 157
           F+N+ L          + +   VQ    + KL         +V+VD+SSPN+A++     
Sbjct: 82  FINIHLK--------PEFLAQSVQAANSDAKLAVNEHANPQKVVVDYSSPNLAKE--MHV 131

Query: 158 PHLPSQIHDILISKAI 173
            HL S I    I +A+
Sbjct: 132 GHLRSTIIGDSIVRAL 147


>gi|82776478|ref|YP_402827.1| arginyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|309789294|ref|ZP_07683885.1| arginyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|109895035|sp|Q32H69.1|SYR_SHIDS RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|81240626|gb|ABB61336.1| arginine tRNA synthetase [Shigella dysenteriae Sd197]
 gi|308922829|gb|EFP68345.1| arginyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   A+ ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHAERVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHAERVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 108/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|349575556|ref|ZP_08887467.1| arginine--tRNA ligase [Neisseria shayeganii 871]
 gi|348012824|gb|EGY51760.1| arginine--tRNA ligase [Neisseria shayeganii 871]
          Length = 572

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 131/328 (39%), Positives = 190/328 (57%), Gaps = 24/328 (7%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGD+Q N  M   K       K+NP ++AQ +A+    +LA N    ++I+  EVA PGF
Sbjct: 35  FGDYQINGVMGAAK-----QRKQNPRELAQQVAN----QLAGN----RLIESAEVAGPGF 81

Query: 304 VNVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           +N+ L   +  +++   + +G       N+   V++D+SSPN+AKEMHVGHLRS+IIGD+
Sbjct: 82  INLRLKADFLAQEVDAALHSGHFNIRRTNEPQSVVIDYSSPNLAKEMHVGHLRSSIIGDS 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           ++R+L +LGH V+R NHVGDWGTQFGML+AHL  +  D    +  +ADL+ FY+++K RF
Sbjct: 142 LARVLGFLGHQVIRQNHVGDWGTQFGMLVAHLVAQQQD--NAAFELADLEQFYRDAKVRF 199

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DED  F   A   VV LQ  D      W+    +S    Q +YD L + LT     GES 
Sbjct: 200 DEDPAFADTARDYVVKLQGGDEQVLALWKQFVAMSLSHAQNVYDTLGLLLTPDDVAGESM 259

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   ++ +V  L  +GL   DDG K+++      +D       + K  GGF Y ++DLA 
Sbjct: 260 YNDDLQTVVDELAAQGLAVDDDGAKVVFLDEFKNQDGDPAAFIVQKQGGGFLYSSTDLAC 319

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           IR R+   +AD ++YV D  Q +HF+ L
Sbjct: 320 IRYRVNRLQADRLLYVVDARQSLHFQQL 347



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 185/345 (53%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+++R+L +LGH V+R NHVGDWGTQFGML+AHL  +  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSLARVLGFLGHQVIRQNHVGDWGTQFGMLVAHLVAQQQD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++K RFDED  F   A   VV LQ  D      W+    +S    Q +YD L + LT  
Sbjct: 193 RDAKVRFDEDPAFADTARDYVVKLQGGDEQVLALWKQFVAMSLSHAQNVYDTLGLLLTPD 252

Query: 684 --RGESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLG----- 713
              GES Y   ++ +V  L  +G                          + +K G     
Sbjct: 253 DVAGESMYNDDLQTVVDELAAQGLAVDDDGAKVVFLDEFKNQDGDPAAFIVQKQGGGFLY 312

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++YV D  Q +HF+ L   A+KAG L P     + + FG +
Sbjct: 313 SSTDLACIRYRVNRLQADRLLYVVDARQSLHFQQLFTVARKAGWL-PESATAEHIPFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL+E + R+   + +KN    L+P E +E  + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLNEAVERATALVAEKN--PALSPAEAAEIGRVVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR+ DYVF +D+ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 430 YADLSKNRSSDYVFDWDQMLSFEGNTAPYLQYAYTRVQSVFRKAG 474



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 101/178 (56%), Gaps = 12/178 (6%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++  L+P E +E  + V  G +KYADLS NR+ DYVF +D+ML   GNTA YL YAYTR+
Sbjct: 407  KNPALSPAEAAEIGRVVGIGAVKYADLSKNRSSDYVFDWDQMLSFEGNTAPYLQYAYTRV 466

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG    D   AAQ  PV  E   E  LA  LL+  DVL  V      H+L  YL
Sbjct: 467  QSVFRKAG----DWDAAAQ--PVFTE-PLEKQLAVELLKFEDVLCNVAESCHPHYLAAYL 519

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y ++  FS FY+ C  ++  AEG   +V   RL LA+ T   +K+  ++L I T+  M
Sbjct: 520  YQVAALFSRFYEACPILK--AEG---SVRNSRLQLAKLTGDTLKQGLELLGIETLDVM 572



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 14/106 (13%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGD+Q N  M   K       K+NP ++AQ +A+    +LA N    ++I+  E A PGF
Sbjct: 35  FGDYQINGVMGAAK-----QRKQNPRELAQQVAN----QLAGN----RLIESAEVAGPGF 81

Query: 108 VNVFLSRVYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARK 152
           +N+ L   +  +++   + +G       N+   V++D+SSPN+A++
Sbjct: 82  INLRLKADFLAQEVDAALHSGHFNIRRTNEPQSVVIDYSSPNLAKE 127


>gi|432718997|ref|ZP_19953966.1| arginyl-tRNA synthetase [Escherichia coli KTE9]
 gi|432793083|ref|ZP_20027168.1| arginyl-tRNA synthetase [Escherichia coli KTE78]
 gi|432799040|ref|ZP_20033063.1| arginyl-tRNA synthetase [Escherichia coli KTE79]
 gi|431262809|gb|ELF54798.1| arginyl-tRNA synthetase [Escherichia coli KTE9]
 gi|431339827|gb|ELG26881.1| arginyl-tRNA synthetase [Escherichia coli KTE78]
 gi|431343907|gb|ELG30863.1| arginyl-tRNA synthetase [Escherichia coli KTE79]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + +     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAEND----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|417586757|ref|ZP_12237529.1| arginyl-tRNA synthetase [Escherichia coli STEC_C165-02]
 gi|345338260|gb|EGW70691.1| arginyl-tRNA synthetase [Escherichia coli STEC_C165-02]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L  V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTAV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|258621159|ref|ZP_05716193.1| Arginyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|258586547|gb|EEW11262.1| Arginyl-tRNA synthetase [Vibrio mimicus VM573]
          Length = 597

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 209/386 (54%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 55  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 101

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 102 FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 161

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 162 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEISMELSDLEAFYRESKKLY 221

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 222 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 281

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+ KGL   DDG ++++    +++   PM ++  K DGGF Y T+D+A 
Sbjct: 282 YNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFQNKDGEPMGVIVQKRDGGFLYTTTDIAC 341

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 342 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPEQVSLEHHA----- 389

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 390 -FGMMLGKDGRPFKTRAGGTVRLADL 414



 Score =  216 bits (550), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 187/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 155 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEISMELSDLEAFY 214

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 215 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 274

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + K+ G    
Sbjct: 275 NVMGESMYNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFQNKDGEPMGVIVQKRDGGFLY 334

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 335 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PEQVSLEHHAFGMM 393

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   +L+  E ++    VA   +K
Sbjct: 394 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PDLSADEKAKIANTVAMAAVK 451

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 452 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 498



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ +L+  E ++    VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 427  ESKNPDLSADEKAKIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 486

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 487  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 541

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 542  YLFELAGIFSSFYEACPILVAEQE----SVKQSRLKLAALTAKTIKQGLALLGIETLERM 597



 Score = 43.9 bits (102), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 55  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 101

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 102 FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKE 147


>gi|432961897|ref|ZP_20151687.1| arginyl-tRNA synthetase [Escherichia coli KTE202]
 gi|433063271|ref|ZP_20250204.1| arginyl-tRNA synthetase [Escherichia coli KTE125]
 gi|431474853|gb|ELH54659.1| arginyl-tRNA synthetase [Escherichia coli KTE202]
 gi|431583105|gb|ELI55115.1| arginyl-tRNA synthetase [Escherichia coli KTE125]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSSFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|296271270|ref|YP_003653902.1| arginyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296094057|gb|ADG90009.1| arginyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 575

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 145/403 (35%), Positives = 221/403 (54%), Gaps = 53/403 (13%)

Query: 205 MSVRD---YLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFK 260
           MS+ D    L++    A+  AF PE  ++   + S+      +F D+Q N A++L K  +
Sbjct: 1   MSMTDPQLLLTERVQQALGTAFGPEYAEEDPLIRSS------QFADYQANIALSLAKRLR 54

Query: 261 DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI 320
                + P D+AQ +   +     T           EV+ PGF+N+ LS  +  EQ + +
Sbjct: 55  -----RAPRDVAQDLLGALDQTGITA----------EVSGPGFINITLSDEWIAEQAERL 99

Query: 321 I------VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDV 374
           +      V  V P T      V++D+S+PN AKEMHVGHLR+TI+GDT++R  E+LG+ V
Sbjct: 100 LQDERLGVPKVTPQT------VVIDYSAPNAAKEMHVGHLRTTIVGDTLARTHEHLGNRV 153

Query: 375 VRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQ 434
           +R NH+GDWGT FGMLI HL D   +   +     +  AFY+E++K+FD D  F++R+ +
Sbjct: 154 IRQNHLGDWGTPFGMLIEHLLDVGEEEALRRLAAGEGNAFYQEARKKFDTDPEFEERSRR 213

Query: 435 CVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYL 491
            V  LQ  DP+  + W    + ++R F K+Y  L VTLT+    GES Y   +  +   L
Sbjct: 214 RVPLLQGGDPESLRLWGEFIEYTKRYFNKVYAMLGVTLTDEHIAGESMYNPMLADVCDEL 273

Query: 492 EKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADW 546
           EK G+ ++ DG   ++     G D   +P+ I K DGG+ Y T+DLAAIR RI + KAD 
Sbjct: 274 EKAGIAKISDGALCVFPPGFTGRDGAPLPLIIRKRDGGYGYATTDLAAIRYRIRDLKADR 333

Query: 547 IVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHV 589
           I+YV    Q +HF+++  +       +R+  +L  D +R  HV
Sbjct: 334 ILYVVGATQSLHFQMVFAT-------ARMAGWLTDD-IRAEHV 368



 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 180/347 (51%), Gaps = 55/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +TI+GDT++R  E+LG+ V+R NH+GDWGT FGMLI HL D   +   +     +  AFY
Sbjct: 135 TTIVGDTLARTHEHLGNRVIRQNHLGDWGTPFGMLIEHLLDVGEEEALRRLAAGEGNAFY 194

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E++K+FD D  F++R+ + V  LQ  DP+  + W    + ++R F K+Y  L VTLT+ 
Sbjct: 195 QEARKKFDTDPEFEERSRRRVPLLQGGDPESLRLWGEFIEYTKRYFNKVYAMLGVTLTDE 254

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +   LEK G                         L + K+ G    
Sbjct: 255 HIAGESMYNPMLADVCDELEKAGIAKISDGALCVFPPGFTGRDGAPLPLIIRKRDGGYGY 314

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              I+YV    Q +HF+++   A+ AG L  +  R + V  G V
Sbjct: 315 ATTDLAAIRYRIRDLKADRILYVVGATQSLHFQMVFATARMAGWLT-DDIRAEHVQIGSV 373

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D K F+TRSG++VKL++LL+E + R+   + D+    E+      +  + V  G +K
Sbjct: 374 LGSDGKMFRTRSGESVKLTDLLNEAIVRADAVIADRGYEPEVR----EQIARKVGMGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS + + +YVF FD+ML   GNT  YL YA  RI SI RT  I+
Sbjct: 430 YADLSVSHDSEYVFDFDRMLALTGNTGPYLQYATARIRSIFRTGSID 476



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 9/162 (5%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            V  G +KYADLS + + +YVF FD+ML   GNT  YL YA  RI SI RT  I+      
Sbjct: 423  VGMGAVKYADLSVSHDSEYVFDFDRMLALTGNTGPYLQYATARIRSIFRTGSIDP----- 477

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
             + + P+ L H  E ALA  LL+   V+  V      H LC YL++++ AF+ FY+NC  
Sbjct: 478  GSVTGPIRLGHPTERALALQLLKFGSVVQAVADLSEPHRLCGYLFELAQAFTAFYENCPV 537

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            ++ + E     V   RL L+  T +++ +  D+L I    +M
Sbjct: 538  LKAEDE----EVRRSRLALSALTLRILLQGLDLLGIDVPERM 575



 Score = 46.2 bits (108), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 37/154 (24%)

Query: 9   MSVRD---YLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFK 64
           MS+ D    L++    A+  AF PE  ++   + S+      +F D+Q N A++L K  +
Sbjct: 1   MSMTDPQLLLTERVQQALGTAFGPEYAEEDPLIRSS------QFADYQANIALSLAKRLR 54

Query: 65  DKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI 124
                + P D+AQ +   +     T           E + PGF+N+ LS  +  EQ + +
Sbjct: 55  -----RAPRDVAQDLLGALDQTGITA----------EVSGPGFINITLSDEWIAEQAERL 99

Query: 125 I------VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           +      V  V P T      V++D+S+PN A++
Sbjct: 100 LQDERLGVPKVTPQT------VVIDYSAPNAAKE 127


>gi|386822560|ref|ZP_10109766.1| arginyl-tRNA synthetase [Serratia plymuthica PRI-2C]
 gi|386380549|gb|EIJ21280.1| arginyl-tRNA synthetase [Serratia plymuthica PRI-2C]
          Length = 576

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 137/375 (36%), Positives = 209/375 (55%), Gaps = 34/375 (9%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQVLLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ +  ++         L  +  K+E+A PGF+N+FL+  +  +Q+  ++   
Sbjct: 53  -MPPRQLAEKVVQLL--------DLGDIASKVEIAGPGFINIFLNGEWVAQQVDQVLSAP 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+ P    K+  +++D+S+PN+AKEMHVGHLRSTIIGD  +R  E+LGH V+R NHVG
Sbjct: 104 KLGIAPV---KQQTIVIDYSAPNVAKEMHVGHLRSTIIGDAAARTQEFLGHKVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       ++DL+ FY+E+KK +DED  F +RA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KMQNENASDMGLSDLEQFYREAKKHYDEDAGFAERARAYVVKLQG 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D    K W  + D++    Q  Y+RLNVTLTE    GES Y   +  +V  L+ KGL  
Sbjct: 220 GDQYCLKMWRKLVDITMAQNQLTYNRLNVTLTEDDVMGESLYNAMLPGIVSDLKAKGLAV 279

Query: 499 LDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
             +G  +++    +++   PM ++  K DGG+ Y T+D+A  + R E   AD ++Y  D 
Sbjct: 280 ESEGATVVFLDEYQNKDGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLGADRVLYYIDS 339

Query: 554 GQGVHFRLLEESTII 568
            Q  H  L++  TI+
Sbjct: 340 RQ--HQHLMQAWTIV 352



 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 188/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R  E+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTQEFLGHKVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+E+KK +DED  F +RA   VV LQ  D    K W  + D++    Q  Y+RL
Sbjct: 187 SDLEQFYREAKKHYDEDAGFAERARAYVVKLQGGDQYCLKMWRKLVDITMAQNQLTYNRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLTE    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTEDDVMGESLYNAMLPGIVSDLKAKGLAVESEGATVVFLDEYQNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYI-PDSLSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TV+LS+LLDE + R+   + +KN   ++   E+      
Sbjct: 366 HHMFGMMLGKDGKPFKTRAGGTVRLSDLLDEAIDRAGKLIAEKN--PDMPAEEMQHLANV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+AS+ + AG++  +   
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASVFKRAGLDESNLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   E+      V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPAEEMQHLANVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            AS+ + AG++  +L     + P+ +  E+E ALA  LL+  +V+  V RD   H +C YL
Sbjct: 468  ASVFKRAGLDESNL-----TLPLVMSEEREIALATRLLQFEEVITTVARDGTPHVMCTYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D+E         RL LA  TA+ +K   D L I TV +M
Sbjct: 523  YDLAGLFSGFYEHCQILNADSE----EARQSRLKLALLTARTLKTGLDTLGIDTVERM 576



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQVLLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ +  ++         L  +  K+E A PGF+N+FL+  +  +Q+  ++   
Sbjct: 53  -MPPRQLAEKVVQLL--------DLGDIASKVEIAGPGFINIFLNGEWVAQQVDQVLSAP 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             G+ P    K+  +++D+S+PN+A++
Sbjct: 104 KLGIAPV---KQQTIVIDYSAPNVAKE 127


>gi|432947745|ref|ZP_20142901.1| arginyl-tRNA synthetase [Escherichia coli KTE196]
 gi|433043469|ref|ZP_20230969.1| arginyl-tRNA synthetase [Escherichia coli KTE117]
 gi|431457723|gb|ELH38060.1| arginyl-tRNA synthetase [Escherichia coli KTE196]
 gi|431556440|gb|ELI30219.1| arginyl-tRNA synthetase [Escherichia coli KTE117]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DED+ F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDDEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DED+ F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDDEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|375335642|ref|ZP_09776986.1| arginyl-tRNA synthetase [Succinivibrionaceae bacterium WG-1]
          Length = 578

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 157/442 (35%), Positives = 242/442 (54%), Gaps = 55/442 (12%)

Query: 207 VRDYLSDVFTHAVQ-VAFPELGDKTASVASTNEKYVHK-FGDFQCNDAMALCKIFKDKGE 264
           +++Y+ +  ++ V+      L DK A+V    E    K  GDF  N AM L K     G 
Sbjct: 1   MKNYIQEKLSNIVENFKKDSLLDKDANVRIMVENTKDKAHGDFATNIAMLLAK-----GM 55

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K+ P +IA+    ++ + L+T+      I KIE+A PGF+N F++  +    I +++ + 
Sbjct: 56  KRKPIEIAE----LIVNSLSTDDK----ISKIEIAGPGFINFFVNSDFLSNAINELVTDP 107

Query: 325 VQPPTLNKKLR-VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
                 NKKL  V+VD+SSPN+AKEM V H+RST+IGD + R LE+LG+ V+R NH+GDW
Sbjct: 108 KLGVKSNKKLETVVVDYSSPNVAKEMAVHHIRSTVIGDAVVRTLEFLGNKVIRANHIGDW 167

Query: 384 GTQFGMLIAHLQ----DKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           GTQFGMLIA L+    ++  D+      ++DL+AFY+E+K  +D DE+F ++A   VV L
Sbjct: 168 GTQFGMLIAFLEKQEKEQHNDF-----DLSDLEAFYREAKVCYDNDEVFAEKARNYVVKL 222

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGL 496
           Q  D   +  W+ +  ++    Q IY+RLN+TLT++   GES Y   +  L+  L++K L
Sbjct: 223 QSGDEYCRTMWKKLVQITMTQNQDIYNRLNITLTDKDIMGESLYNSMLAPLIEDLKQKNL 282

Query: 497 LELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIV 548
              DDG  +++        G  RG+I   + K DGGF Y T+D+A ++ R E+  A  I+
Sbjct: 283 AVKDDGAMVVYLDSFKDKDGNPRGAI---VQKRDGGFLYTTTDVACVKYRCEKLGAQRII 339

Query: 549 YVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFP 608
           Y  D  Q  H        ++   I++L  Y+  D V L H       FGM++   +D  P
Sbjct: 340 YFADSRQHEHL-------LMSWDIAKLAGYV-PDGVSLEH-----ASFGMMLG--KDGKP 384

Query: 609 DYLTKSPPIADLQAFYKESKKR 630
            + T+S     L+    E+  R
Sbjct: 385 -FKTRSGGTVKLKDLLNEAVAR 405



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 193/347 (55%), Gaps = 64/347 (18%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQ----DKFPDYLTKSPPIADL 620
           ST+IGD + R LE+LG+ V+R NH+GDWGTQFGMLIA L+    ++  D+      ++DL
Sbjct: 140 STVIGDAVVRTLEFLGNKVIRANHIGDWGTQFGMLIAFLEKQEKEQHNDF-----DLSDL 194

Query: 621 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT 680
           +AFY+E+K  +D DE+F ++A   VV LQ  D   +  W+ +  ++    Q IY+RLN+T
Sbjct: 195 EAFYREAKVCYDNDEVFAEKARNYVVKLQSGDEYCRTMWKKLVQITMTQNQDIYNRLNIT 254

Query: 681 LTER---GESFYQKHMEQLVPYLEKKGNLSL----------------------------- 708
           LT++   GES Y   +  L+  L++K NL++                             
Sbjct: 255 LTDKDIMGESLYNSMLAPLIEDLKQK-NLAVKDDGAMVVYLDSFKDKDGNPRGAIVQKRD 313

Query: 709 ----------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFV 749
                            +KLG   I+Y  D  Q  H  +  + AK AG + P+   ++  
Sbjct: 314 GGFLYTTTDVACVKYRCEKLGAQRIIYFADSRQHEHLLMSWDIAKLAGYV-PDGVSLEHA 372

Query: 750 GFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVA 809
            FG++LG+D K FKTRSG TVKL +LL+E + R+   L +K+  ++LTP E     QAVA
Sbjct: 373 SFGMMLGKDGKPFKTRSGGTVKLKDLLNEAVARATTLLSEKS--SDLTPKEKENVIQAVA 430

Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
            G +KYADLS NR  DY+F +D ML   GNT+ YL YAY+RI +I R
Sbjct: 431 MGAVKYADLSKNRTTDYIFDWDNMLTFEGNTSPYLQYAYSRIQAIFR 477



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 95/178 (53%), Gaps = 12/178 (6%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            + ++LTP E     QAVA G +KYADLS NR  DY+F +D ML   GNT+ YL YAY+RI
Sbjct: 413  KSSDLTPKEKENVIQAVAMGAVKYADLSKNRTTDYIFDWDNMLTFEGNTSPYLQYAYSRI 472

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             +I R         +  A+   V L  E E  LA+ +++ N+ +  V      H LC YL
Sbjct: 473  QAIFR---------KTDAKVGKVKLVEEAEKNLAQHIVKFNETVNQVAEKSMPHLLCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y ++  F +FY+ C  I KD  G    +   RL L + TA V+K    +L I  + +M
Sbjct: 524  YQLAVLFMKFYEAC-PINKD--GVELEIRESRLALCQVTANVLKTGLSLLGINVMERM 578



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 16/145 (11%)

Query: 11  VRDYLSDVFTHAVQ-VAFPELGDKTASVASTNEKYVHK-FGDFQCNDAMALCKIFKDKGE 68
           +++Y+ +  ++ V+      L DK A+V    E    K  GDF  N AM L K     G 
Sbjct: 1   MKNYIQEKLSNIVENFKKDSLLDKDANVRIMVENTKDKAHGDFATNIAMLLAK-----GM 55

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K+ P +IA+    ++ + L+T+      I KIE A PGF+N F++  +    + +++ + 
Sbjct: 56  KRKPIEIAE----LIVNSLSTDDK----ISKIEIAGPGFINFFVNSDFLSNAINELVTDP 107

Query: 129 VQPPTLNKKLR-VLVDFSSPNIARK 152
                 NKKL  V+VD+SSPN+A++
Sbjct: 108 KLGVKSNKKLETVVVDYSSPNVAKE 132


>gi|422805886|ref|ZP_16854318.1| arginyl-tRNA synthetase [Escherichia fergusonii B253]
 gi|324113611|gb|EGC07586.1| arginyl-tRNA synthetase [Escherichia fergusonii B253]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/389 (36%), Positives = 213/389 (54%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAENVQQALKSDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H+  
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHHM-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 369 ----FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/342 (39%), Positives = 182/342 (53%), Gaps = 54/342 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFR 472



 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 103/191 (53%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R     +E       + PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFR----KAEIAEEELAAAPVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSSFYEHCPILSAENE----EVRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAENVQQALKSDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|170683284|ref|YP_001743368.1| arginyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|218699552|ref|YP_002407181.1| arginyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218705377|ref|YP_002412896.1| arginyl-tRNA synthetase [Escherichia coli UMN026]
 gi|293405370|ref|ZP_06649362.1| arginyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|298381013|ref|ZP_06990612.1| arginyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300899127|ref|ZP_07117409.1| arginyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|301018279|ref|ZP_07182790.1| arginyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|331663376|ref|ZP_08364286.1| arginine--tRNA ligase [Escherichia coli TA143]
 gi|386624505|ref|YP_006144233.1| arginyl-tRNA synthetase [Escherichia coli O7:K1 str. CE10]
 gi|387607496|ref|YP_006096352.1| arginyl-tRNA synthetase [Escherichia coli 042]
 gi|419916390|ref|ZP_14434699.1| arginyl-tRNA synthetase [Escherichia coli KD2]
 gi|419932446|ref|ZP_14449756.1| arginyl-tRNA synthetase [Escherichia coli 576-1]
 gi|432353791|ref|ZP_19597065.1| arginyl-tRNA synthetase [Escherichia coli KTE2]
 gi|432402144|ref|ZP_19644897.1| arginyl-tRNA synthetase [Escherichia coli KTE26]
 gi|432426315|ref|ZP_19668820.1| arginyl-tRNA synthetase [Escherichia coli KTE181]
 gi|432460932|ref|ZP_19703083.1| arginyl-tRNA synthetase [Escherichia coli KTE204]
 gi|432476069|ref|ZP_19718069.1| arginyl-tRNA synthetase [Escherichia coli KTE208]
 gi|432489486|ref|ZP_19731367.1| arginyl-tRNA synthetase [Escherichia coli KTE213]
 gi|432538043|ref|ZP_19774946.1| arginyl-tRNA synthetase [Escherichia coli KTE235]
 gi|432543447|ref|ZP_19780294.1| arginyl-tRNA synthetase [Escherichia coli KTE236]
 gi|432548937|ref|ZP_19785709.1| arginyl-tRNA synthetase [Escherichia coli KTE237]
 gi|432602401|ref|ZP_19838645.1| arginyl-tRNA synthetase [Escherichia coli KTE66]
 gi|432622078|ref|ZP_19858112.1| arginyl-tRNA synthetase [Escherichia coli KTE76]
 gi|432631615|ref|ZP_19867544.1| arginyl-tRNA synthetase [Escherichia coli KTE80]
 gi|432641260|ref|ZP_19877097.1| arginyl-tRNA synthetase [Escherichia coli KTE83]
 gi|432666245|ref|ZP_19901827.1| arginyl-tRNA synthetase [Escherichia coli KTE116]
 gi|432770843|ref|ZP_20005187.1| arginyl-tRNA synthetase [Escherichia coli KTE50]
 gi|432774965|ref|ZP_20009247.1| arginyl-tRNA synthetase [Escherichia coli KTE54]
 gi|432815575|ref|ZP_20049360.1| arginyl-tRNA synthetase [Escherichia coli KTE115]
 gi|432839501|ref|ZP_20072988.1| arginyl-tRNA synthetase [Escherichia coli KTE140]
 gi|432869079|ref|ZP_20089874.1| arginyl-tRNA synthetase [Escherichia coli KTE147]
 gi|432886818|ref|ZP_20100907.1| arginyl-tRNA synthetase [Escherichia coli KTE158]
 gi|432912919|ref|ZP_20118729.1| arginyl-tRNA synthetase [Escherichia coli KTE190]
 gi|433018837|ref|ZP_20207082.1| arginyl-tRNA synthetase [Escherichia coli KTE105]
 gi|433053383|ref|ZP_20240578.1| arginyl-tRNA synthetase [Escherichia coli KTE122]
 gi|433068160|ref|ZP_20254961.1| arginyl-tRNA synthetase [Escherichia coli KTE128]
 gi|433178522|ref|ZP_20362934.1| arginyl-tRNA synthetase [Escherichia coli KTE82]
 gi|433203454|ref|ZP_20387235.1| arginyl-tRNA synthetase [Escherichia coli KTE95]
 gi|226701377|sp|B7NS42.1|SYR_ECO7I RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|226701379|sp|B7NBM7.1|SYR_ECOLU RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|226701380|sp|B1LCZ5.1|SYR_ECOSM RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|170521002|gb|ACB19180.1| arginyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|218369538|emb|CAR17307.1| arginyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218432474|emb|CAR13367.1| arginyl-tRNA synthetase [Escherichia coli UMN026]
 gi|284921796|emb|CBG34869.1| arginyl-tRNA synthetase [Escherichia coli 042]
 gi|291427578|gb|EFF00605.1| arginyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|298278455|gb|EFI19969.1| arginyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300357245|gb|EFJ73115.1| arginyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300399749|gb|EFJ83287.1| arginyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|331059175|gb|EGI31152.1| arginine--tRNA ligase [Escherichia coli TA143]
 gi|349738243|gb|AEQ12949.1| arginyl-tRNA synthetase [Escherichia coli O7:K1 str. CE10]
 gi|388396114|gb|EIL57243.1| arginyl-tRNA synthetase [Escherichia coli KD2]
 gi|388417361|gb|EIL77215.1| arginyl-tRNA synthetase [Escherichia coli 576-1]
 gi|430876032|gb|ELB99553.1| arginyl-tRNA synthetase [Escherichia coli KTE2]
 gi|430926974|gb|ELC47561.1| arginyl-tRNA synthetase [Escherichia coli KTE26]
 gi|430956655|gb|ELC75329.1| arginyl-tRNA synthetase [Escherichia coli KTE181]
 gi|430989645|gb|ELD06099.1| arginyl-tRNA synthetase [Escherichia coli KTE204]
 gi|431006010|gb|ELD21017.1| arginyl-tRNA synthetase [Escherichia coli KTE208]
 gi|431021522|gb|ELD34845.1| arginyl-tRNA synthetase [Escherichia coli KTE213]
 gi|431069957|gb|ELD78277.1| arginyl-tRNA synthetase [Escherichia coli KTE235]
 gi|431074670|gb|ELD82218.1| arginyl-tRNA synthetase [Escherichia coli KTE236]
 gi|431080232|gb|ELD87037.1| arginyl-tRNA synthetase [Escherichia coli KTE237]
 gi|431140975|gb|ELE42740.1| arginyl-tRNA synthetase [Escherichia coli KTE66]
 gi|431159777|gb|ELE60321.1| arginyl-tRNA synthetase [Escherichia coli KTE76]
 gi|431171083|gb|ELE71264.1| arginyl-tRNA synthetase [Escherichia coli KTE80]
 gi|431183525|gb|ELE83341.1| arginyl-tRNA synthetase [Escherichia coli KTE83]
 gi|431201620|gb|ELF00317.1| arginyl-tRNA synthetase [Escherichia coli KTE116]
 gi|431316043|gb|ELG03942.1| arginyl-tRNA synthetase [Escherichia coli KTE50]
 gi|431318680|gb|ELG06375.1| arginyl-tRNA synthetase [Escherichia coli KTE54]
 gi|431364631|gb|ELG51162.1| arginyl-tRNA synthetase [Escherichia coli KTE115]
 gi|431389653|gb|ELG73364.1| arginyl-tRNA synthetase [Escherichia coli KTE140]
 gi|431410995|gb|ELG94138.1| arginyl-tRNA synthetase [Escherichia coli KTE147]
 gi|431416863|gb|ELG99334.1| arginyl-tRNA synthetase [Escherichia coli KTE158]
 gi|431440348|gb|ELH21677.1| arginyl-tRNA synthetase [Escherichia coli KTE190]
 gi|431532900|gb|ELI09404.1| arginyl-tRNA synthetase [Escherichia coli KTE105]
 gi|431571779|gb|ELI44649.1| arginyl-tRNA synthetase [Escherichia coli KTE122]
 gi|431585852|gb|ELI57799.1| arginyl-tRNA synthetase [Escherichia coli KTE128]
 gi|431704886|gb|ELJ69511.1| arginyl-tRNA synthetase [Escherichia coli KTE82]
 gi|431722522|gb|ELJ86488.1| arginyl-tRNA synthetase [Escherichia coli KTE95]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|148550164|ref|YP_001270266.1| arginyl-tRNA synthetase [Pseudomonas putida F1]
 gi|397692931|ref|YP_006530811.1| Arginyl-tRNA synthetase [Pseudomonas putida DOT-T1E]
 gi|421523528|ref|ZP_15970157.1| arginyl-tRNA ligase [Pseudomonas putida LS46]
 gi|166232825|sp|A5WAC2.1|SYR_PSEP1 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|148514222|gb|ABQ81082.1| arginyl-tRNA synthetase [Pseudomonas putida F1]
 gi|397329661|gb|AFO46020.1| Arginyl-tRNA synthetase [Pseudomonas putida DOT-T1E]
 gi|402752514|gb|EJX13019.1| arginyl-tRNA ligase [Pseudomonas putida LS46]
          Length = 578

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 208/370 (56%), Gaps = 51/370 (13%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K     G K  P D+A+ + + +       P+ A  I K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKLINAL-------PASAD-ISKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLR 355
           N F        Q  D + N +     +  L         +V++D S+PN+AKEMHVGHLR
Sbjct: 88  NFF--------QNTDALANRLDAALADAHLGARKAGPAQKVVIDMSAPNLAKEMHVGHLR 139

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415
           STIIGD+++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDNVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           + +KKRFDE E F  RA   VV LQ  DP+    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPECLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
              GES Y   +  +V  L+ KGLL  D G + ++       +   +P+ + K+DGG+ Y
Sbjct: 256 DVMGESAYNDDLANVVADLKAKGLLVEDQGAQCVFLDEFKNSEGDPLPVIVQKADGGYLY 315

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            T+DLAA+R R    KAD  +Y  D  Q +HF  + E       ++R   ++GH  +++ 
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFE-------VARRAGFVGHP-MQME 367

Query: 588 HVGDWGTQFG 597
           H+G +GT  G
Sbjct: 368 HMG-FGTMNG 376



 Score =  217 bits (552), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 182/345 (52%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDNVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  DP+    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPECLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKK----------------------------------GNLS 707
              GES Y   +  +V  L+ K                                  G L 
Sbjct: 256 DVMGESAYNDDLANVVADLKAKGLLVEDQGAQCVFLDEFKNSEGDPLPVIVQKADGGYLY 315

Query: 708 LTKKLGIV-------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T  L  V             Y  D  Q +HF  + E A++AG +  +  +M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFEVARRAGFVG-HPMQMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN    L   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAKERAYALVKEKN--PSLADDELRHIGEVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 88/167 (52%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++  L   EL    + V  G +KYADLS +R  DY F+F+ ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPSLADDELRHIGEVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G   +++        + L    E  LA  L +  ++L  V      H LC 
Sbjct: 468  RVAGVFRKLGKGFDEV-----DGKIVLHAAHEQDLAARLAQFGEILNNVAEKGTPHVLCS 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+
Sbjct: 523  YLYDLAGLFSSFYENCPILAAETPSQQQS----RLRLAALTGRTLKQ 565


>gi|218548565|ref|YP_002382356.1| arginyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|424815963|ref|ZP_18241114.1| arginyl-tRNA synthetase [Escherichia fergusonii ECD227]
 gi|226701420|sp|B7LPH0.1|SYR_ESCF3 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|218356106|emb|CAQ88723.1| arginyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|325496983|gb|EGC94842.1| arginyl-tRNA synthetase [Escherichia fergusonii ECD227]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/389 (36%), Positives = 213/389 (54%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPTFLAENVQQALKSDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ ++   +   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H+  
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHHM-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 369 ----FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/342 (39%), Positives = 182/342 (53%), Gaps = 54/342 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFR 472



 Score =  123 bits (309), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 103/191 (53%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R     +E       + PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFR----KAEIAEEELAAAPVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSSFYEHCPILSAENE----EVRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPTFLAENVQQALKSDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|432397669|ref|ZP_19640450.1| arginyl-tRNA synthetase [Escherichia coli KTE25]
 gi|430915773|gb|ELC36851.1| arginyl-tRNA synthetase [Escherichia coli KTE25]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +A+L+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELANLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +A+L+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LANLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|395445962|ref|YP_006386215.1| arginyl-tRNA synthetase [Pseudomonas putida ND6]
 gi|388559959|gb|AFK69100.1| arginyl-tRNA synthetase [Pseudomonas putida ND6]
          Length = 578

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 208/370 (56%), Gaps = 51/370 (13%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K     G K  P D+A+ + + +       P+ A  I K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKLINAL-------PASAD-ISKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLR 355
           N F        Q  D + N +     +  L         +V++D S+PN+AKEMHVGHLR
Sbjct: 88  NFF--------QNTDALANRLDAALADAHLGARKAGPAQKVVIDMSAPNLAKEMHVGHLR 139

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415
           STIIGD+++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDNVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           + +KKRFDE E F  RA   VV LQ  DP+    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPECLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
              GES Y   +  +V  L+ KGLL  D G + ++       +   +P+ + K+DGG+ Y
Sbjct: 256 DVMGESAYNDDLANVVSDLKAKGLLVEDQGAQCVFLDEFKNSEGDPLPVIVQKADGGYLY 315

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            T+DLAA+R R    KAD  +Y  D  Q +HF  + E       ++R   ++GH  +++ 
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFE-------VARRAGFVGHP-MQME 367

Query: 588 HVGDWGTQFG 597
           H+G +GT  G
Sbjct: 368 HMG-FGTMNG 376



 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 183/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDNVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  DP+    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPECLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLANVVSDLKAKGLLVEDQGAQCVFLDEFKNSEGDPLPVIVQKADGGYLY 315

Query: 707 ------------SLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                       ++ K    +Y  D  Q +HF  + E A++AG +  +  +M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFEVARRAGFVG-HPMQMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN    L   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAKERAYALVKEKN--PSLADDELRHIGEVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 88/167 (52%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++  L   EL    + V  G +KYADLS +R  DY F+F+ ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPSLADDELRHIGEVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G   +++        + L    E  LA  L +  ++L  V      H LC 
Sbjct: 468  RVAGVFRKLGKGFDEV-----DGKIVLHAAHEQDLAARLAQFGEILNNVAEKGTPHVLCS 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+
Sbjct: 523  YLYDLAGLFSSFYENCPILAAETPSQQQS----RLRLAALTGRTLKQ 565


>gi|420336387|ref|ZP_14837971.1| arginyl-tRNA synthetase [Shigella flexneri K-315]
 gi|391262544|gb|EIQ21566.1| arginyl-tRNA synthetase [Shigella flexneri K-315]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R +   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYDTLHADRMLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYDTLHADRMLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVSTP---EKQTIVVDYSAPNVAKE 127


>gi|365849953|ref|ZP_09390421.1| arginine--tRNA ligase [Yokenella regensburgei ATCC 43003]
 gi|364568278|gb|EHM45923.1| arginine--tRNA ligase [Yokenella regensburgei ATCC 43003]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 144/389 (37%), Positives = 208/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+ +L  +  ++E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVI--------THLNLDGIASRVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E +   + +     T  +   +++D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLAEHVNAALASERLGVTRPEPQTIVIDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R  E+LGH V+R NHVGDWGTQFGMLIA+L+ +  +       +ADL+ FY+E+KK +
Sbjct: 142 SVRTQEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQEN-AGDMELADLEGFYREAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEAFAERARSYVVKLQGGDEYFRQMWRKLVDITMSQNQLTYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEAMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H   
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDSVPLEH--- 366

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 367 --HMFGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/346 (39%), Positives = 185/346 (53%), Gaps = 54/346 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R  E+LGH V+R NHVGDWGTQFGMLIA+L+ +  +       +ADL+ FY
Sbjct: 135 STIIGDASVRTQEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQEN-AGDMELADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFRQMWRKLVDITMSQNQLTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEAMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R AGI
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGI 476



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AGI    L  A+    V ++ ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAGIEERALTNAS----VVIKEDREAQLAARLLQFEETLNVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E     +   RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESE----EIRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+ +L  +  ++E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVI--------THLNLDGIASRVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E +   + +     T  +   +++D+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVNAALASERLGVTRPEPQTIVIDYSAPNVAKE 127


>gi|91211101|ref|YP_541087.1| arginyl-tRNA synthetase [Escherichia coli UTI89]
 gi|117624028|ref|YP_852941.1| arginyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|218558741|ref|YP_002391654.1| arginyl-tRNA synthetase [Escherichia coli S88]
 gi|237705832|ref|ZP_04536313.1| arginyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|386599674|ref|YP_006101180.1| arginyl-tRNA synthetase [Escherichia coli IHE3034]
 gi|386604157|ref|YP_006110457.1| arginyl-tRNA synthetase [Escherichia coli UM146]
 gi|417084821|ref|ZP_11952460.1| arginyl-tRNA synthetase [Escherichia coli cloneA_i1]
 gi|419946712|ref|ZP_14463100.1| arginyl-tRNA synthetase [Escherichia coli HM605]
 gi|422749103|ref|ZP_16803015.1| arginyl-tRNA synthetase [Escherichia coli H252]
 gi|422755214|ref|ZP_16809039.1| arginyl-tRNA synthetase [Escherichia coli H263]
 gi|422838206|ref|ZP_16886179.1| arginyl-tRNA synthetase [Escherichia coli H397]
 gi|432358207|ref|ZP_19601436.1| arginyl-tRNA synthetase [Escherichia coli KTE4]
 gi|432362833|ref|ZP_19606004.1| arginyl-tRNA synthetase [Escherichia coli KTE5]
 gi|432441287|ref|ZP_19683628.1| arginyl-tRNA synthetase [Escherichia coli KTE189]
 gi|432446407|ref|ZP_19688706.1| arginyl-tRNA synthetase [Escherichia coli KTE191]
 gi|432573905|ref|ZP_19810387.1| arginyl-tRNA synthetase [Escherichia coli KTE55]
 gi|432588134|ref|ZP_19824490.1| arginyl-tRNA synthetase [Escherichia coli KTE58]
 gi|432597854|ref|ZP_19834130.1| arginyl-tRNA synthetase [Escherichia coli KTE62]
 gi|432754615|ref|ZP_19989166.1| arginyl-tRNA synthetase [Escherichia coli KTE22]
 gi|432778745|ref|ZP_20012988.1| arginyl-tRNA synthetase [Escherichia coli KTE59]
 gi|432787691|ref|ZP_20021823.1| arginyl-tRNA synthetase [Escherichia coli KTE65]
 gi|432821128|ref|ZP_20054820.1| arginyl-tRNA synthetase [Escherichia coli KTE118]
 gi|432827272|ref|ZP_20060924.1| arginyl-tRNA synthetase [Escherichia coli KTE123]
 gi|433005324|ref|ZP_20193754.1| arginyl-tRNA synthetase [Escherichia coli KTE227]
 gi|433007822|ref|ZP_20196240.1| arginyl-tRNA synthetase [Escherichia coli KTE229]
 gi|433014012|ref|ZP_20202374.1| arginyl-tRNA synthetase [Escherichia coli KTE104]
 gi|433023641|ref|ZP_20211642.1| arginyl-tRNA synthetase [Escherichia coli KTE106]
 gi|433153942|ref|ZP_20338897.1| arginyl-tRNA synthetase [Escherichia coli KTE176]
 gi|433163652|ref|ZP_20348397.1| arginyl-tRNA synthetase [Escherichia coli KTE179]
 gi|433168773|ref|ZP_20353406.1| arginyl-tRNA synthetase [Escherichia coli KTE180]
 gi|433323128|ref|ZP_20400498.1| arginyl-tRNA ligase [Escherichia coli J96]
 gi|123084447|sp|Q1RAQ8.1|SYR_ECOUT RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|166232784|sp|A1AC37.1|SYR_ECOK1 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|226701376|sp|B7MBT5.1|SYR_ECO45 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|91072675|gb|ABE07556.1| arginine tRNA synthetase [Escherichia coli UTI89]
 gi|115513152|gb|ABJ01227.1| arginyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|218365510|emb|CAR03237.1| arginyl-tRNA synthetase [Escherichia coli S88]
 gi|226900589|gb|EEH86848.1| arginyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|294493402|gb|ADE92158.1| arginyl-tRNA synthetase [Escherichia coli IHE3034]
 gi|307626641|gb|ADN70945.1| arginyl-tRNA synthetase [Escherichia coli UM146]
 gi|323952379|gb|EGB48252.1| arginyl-tRNA synthetase [Escherichia coli H252]
 gi|323956508|gb|EGB52250.1| arginyl-tRNA synthetase [Escherichia coli H263]
 gi|355351996|gb|EHG01183.1| arginyl-tRNA synthetase [Escherichia coli cloneA_i1]
 gi|371614130|gb|EHO02615.1| arginyl-tRNA synthetase [Escherichia coli H397]
 gi|388412248|gb|EIL72342.1| arginyl-tRNA synthetase [Escherichia coli HM605]
 gi|430878191|gb|ELC01623.1| arginyl-tRNA synthetase [Escherichia coli KTE4]
 gi|430887372|gb|ELC10199.1| arginyl-tRNA synthetase [Escherichia coli KTE5]
 gi|430967128|gb|ELC84490.1| arginyl-tRNA synthetase [Escherichia coli KTE189]
 gi|430972680|gb|ELC89648.1| arginyl-tRNA synthetase [Escherichia coli KTE191]
 gi|431108616|gb|ELE12588.1| arginyl-tRNA synthetase [Escherichia coli KTE55]
 gi|431120467|gb|ELE23465.1| arginyl-tRNA synthetase [Escherichia coli KTE58]
 gi|431130721|gb|ELE32804.1| arginyl-tRNA synthetase [Escherichia coli KTE62]
 gi|431302816|gb|ELF91995.1| arginyl-tRNA synthetase [Escherichia coli KTE22]
 gi|431326898|gb|ELG14243.1| arginyl-tRNA synthetase [Escherichia coli KTE59]
 gi|431337408|gb|ELG24496.1| arginyl-tRNA synthetase [Escherichia coli KTE65]
 gi|431367975|gb|ELG54443.1| arginyl-tRNA synthetase [Escherichia coli KTE118]
 gi|431372521|gb|ELG58183.1| arginyl-tRNA synthetase [Escherichia coli KTE123]
 gi|431515229|gb|ELH93056.1| arginyl-tRNA synthetase [Escherichia coli KTE227]
 gi|431524355|gb|ELI01302.1| arginyl-tRNA synthetase [Escherichia coli KTE229]
 gi|431531998|gb|ELI08653.1| arginyl-tRNA synthetase [Escherichia coli KTE104]
 gi|431537292|gb|ELI13440.1| arginyl-tRNA synthetase [Escherichia coli KTE106]
 gi|431675399|gb|ELJ41544.1| arginyl-tRNA synthetase [Escherichia coli KTE176]
 gi|431688739|gb|ELJ54257.1| arginyl-tRNA synthetase [Escherichia coli KTE179]
 gi|431689097|gb|ELJ54614.1| arginyl-tRNA synthetase [Escherichia coli KTE180]
 gi|432348296|gb|ELL42747.1| arginyl-tRNA ligase [Escherichia coli J96]
          Length = 577

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 142/389 (36%), Positives = 209/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FG++Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGNYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E ++  + +      + +K  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVAMPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H+  
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHHM-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 369 ----FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FG++Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGNYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +      + +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVAMPEKQTIVVDYSAPNVAKE 127


>gi|386014359|ref|YP_005932636.1| protein ArgS [Pseudomonas putida BIRD-1]
 gi|313501065|gb|ADR62431.1| ArgS [Pseudomonas putida BIRD-1]
          Length = 578

 Score =  229 bits (585), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 208/370 (56%), Gaps = 51/370 (13%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K     G K  P D+A+ + + +       P+ A  I K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKLINAL-------PTSAD-ISKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLR 355
           N F        Q  D + N +     +  L         +V++D S+PN+AKEMHVGHLR
Sbjct: 88  NFF--------QNTDALANRLDAALADAHLGARKAGPAQKVVIDMSAPNLAKEMHVGHLR 139

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415
           STIIGD+++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDNVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           + +KKRFDE E F  RA   VV LQ  DP+    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPECLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
              GES Y   +  +V  L+ KGLL  D G + ++       +   +P+ + K+DGG+ Y
Sbjct: 256 DVMGESAYNDDLANVVADLKAKGLLVEDQGAQCVFLDEFKNSEGDPLPVIVQKADGGYLY 315

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            T+DLAA+R R    KAD  +Y  D  Q +HF  + E       ++R   ++GH  +++ 
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFE-------VARRAGFVGHP-MQME 367

Query: 588 HVGDWGTQFG 597
           H+G +GT  G
Sbjct: 368 HMG-FGTMNG 376



 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 183/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD+++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDNVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  DP+    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPECLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLANVVADLKAKGLLVEDQGAQCVFLDEFKNSEGDPLPVIVQKADGGYLY 315

Query: 707 ------------SLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                       ++ K    +Y  D  Q +HF  + E A++AG +  +  +M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSNVLKADRALYFVDQRQALHFNQVFEVARRAGFVG-HPMQMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN    L   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAKERAYALVKEKN--PSLADDELRHIGEVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 13/169 (7%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++  L   EL    + V  G +KYADLS +R  DY F+F+ ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPSLADDELRHIGEVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIART--AGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHL 1057
            R+A + R    G +  D ++  Q+      HE++  LA  L +  ++L  V      H L
Sbjct: 468  RVAGVFRKLGKGFDEVDGKIVLQAA-----HEQD--LAARLAQFGEILNNVAEKGTPHVL 520

Query: 1058 CEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            C YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+
Sbjct: 521  CSYLYDLAGLFSSFYENCPILAAETPSQQQS----RLRLAALTGRTLKQ 565


>gi|162455942|ref|YP_001618309.1| arginyl-tRNA synthetase [Sorangium cellulosum So ce56]
 gi|161166524|emb|CAN97829.1| argS [Sorangium cellulosum So ce56]
          Length = 577

 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 143/365 (39%), Positives = 189/365 (51%), Gaps = 55/365 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE LGH V+R NH+GDWGT FGMLI H+ D      ++   + DL AFY
Sbjct: 136 STIIGDALARVLEALGHRVIRQNHLGDWGTPFGMLIEHMLDLGEAAASQELSVGDLNAFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           ++++ +FD D  F +R+ + VV LQ  D      W  +   S R F  +Y RL VTLT+ 
Sbjct: 196 RQARAKFDGDAAFAERSRRRVVRLQGGDEQTLALWRQLVRESTRYFDSVYRRLGVTLTDA 255

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------NLSLTKKLG---------------- 713
              GESFY   +  +V  L +KG                T K G                
Sbjct: 256 DFAGESFYNPMLPDVVEELGRKGLARESEGALCVFPAGFTGKGGEPLPLIVRKQDGGYGY 315

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              IVYV    Q  HF ++   A++AG L P   R + V FG V
Sbjct: 316 ATTDLAAIRHRLTTVGARRIVYVVGAPQSQHFAMVFATAREAGWLTP-PARAEHVAFGSV 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D+K FKTRSGDTVKLS+L+DE   R+   +++KN   +L         ++V  G +K
Sbjct: 375 LGADKKMFKTRSGDTVKLSDLIDEATERAAKVVREKN--PDLDAEAADAVARSVGVGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874
           YADLS +R  DYVF +D+ML   GNTA YL+YA+ RI SI R AG+  E P E     SE
Sbjct: 433 YADLSSDRIKDYVFDWDRMLAFEGNTAPYLMYAHARIRSIFRKAGV--ESPREAGIVLSE 490

Query: 875 VEDRC 879
             +R 
Sbjct: 491 PAERA 495



 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 137/363 (37%), Positives = 196/363 (53%), Gaps = 31/363 (8%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           L+  F  A+  AF   G + A+V  +  +  H   D+Q N AMAL K        + P +
Sbjct: 8   LARAFQAAITTAF---GAEHAAVDPSLRRSTHA--DYQANAAMALGKRLG-----RPPRE 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG---VQP 327
           +A +I + +         L  +  K+E+A PGFVN+ L   Y   ++ +    G   + P
Sbjct: 58  VAAAIVAAL--------ELDGICRKVEIAGPGFVNLTLEDAYLTRELAETAGGGRLGIAP 109

Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
               +   V+VD+S PN AKEMHVGHLRSTIIGD ++R+LE LGH V+R NH+GDWGT F
Sbjct: 110 AAEPET--VIVDYSGPNAAKEMHVGHLRSTIIGDALARVLEALGHRVIRQNHLGDWGTPF 167

Query: 388 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           GMLI H+ D      ++   + DL AFY++++ +FD D  F +R+ + VV LQ  D    
Sbjct: 168 GMLIEHMLDLGEAAASQELSVGDLNAFYRQARAKFDGDAAFAERSRRRVVRLQGGDEQTL 227

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
             W  +   S R F  +Y RL VTLT+    GESFY   +  +V  L +KGL    +G  
Sbjct: 228 ALWRQLVRESTRYFDSVYRRLGVTLTDADFAGESFYNPMLPDVVEELGRKGLARESEGAL 287

Query: 505 IMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
            ++     G+    +P+ + K DGG+ Y T+DLAAIR R+    A  IVYV    Q  HF
Sbjct: 288 CVFPAGFTGKGGEPLPLIVRKQDGGYGYATTDLAAIRHRLTTVGARRIVYVVGAPQSQHF 347

Query: 560 RLL 562
            ++
Sbjct: 348 AMV 350



 Score =  112 bits (281), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 100/188 (53%), Gaps = 12/188 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   +++KN   +L         ++V  G +KYADLS +R  DYVF +D+ML   GNTA
Sbjct: 402  RAAKVVREKN--PDLDAEAADAVARSVGVGAVKYADLSSDRIKDYVFDWDRMLAFEGNTA 459

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YL+YA+ RI SI R AG+ S       +   + L    E ALA  LLR   VL  V   
Sbjct: 460  PYLMYAHARIRSIFRKAGVESP------REAGIVLSEPAERALALELLRFGAVLEDVAAT 513

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
            L  H LC YL++++ +F+ FY+ C  +  +++     V   RL L + TA+V+ K   +L
Sbjct: 514  LEPHRLCGYLFELAGSFTSFYERCPVLRAESD----DVRRSRLALCDLTAEVLAKGLGLL 569

Query: 1112 NIRTVHKM 1119
             I    +M
Sbjct: 570  GIEAPERM 577



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 23/141 (16%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           L+  F  A+  AF   G + A+V  +  +  H   D+Q N AMAL K        + P +
Sbjct: 8   LARAFQAAITTAF---GAEHAAVDPSLRRSTHA--DYQANAAMALGKRLG-----RPPRE 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQP 131
           +A +I + +         L  +  K+E A PGFVN+ L   Y   ++ +       G+ P
Sbjct: 58  VAAAIVAAL--------ELDGICRKVEIAGPGFVNLTLEDAYLTRELAETAGGGRLGIAP 109

Query: 132 PTLNKKLRVLVDFSSPNIARK 152
               +   V+VD+S PN A++
Sbjct: 110 AAEPET--VIVDYSGPNAAKE 128


>gi|380301610|ref|ZP_09851303.1| arginyl-tRNA synthetase [Brachybacterium squillarum M-6-3]
          Length = 588

 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 198/371 (53%), Gaps = 38/371 (10%)

Query: 211 LSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 269
           L++ F  A   AF PE  D    +  +      +F DFQCN AM L K    K     P 
Sbjct: 8   LTERFQSAFAAAFGPEFADADPIIRPS------QFADFQCNAAMGLAKRLGRK-----PR 56

Query: 270 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG-VQPP 328
           DIAQ I   V         L  + +  E+A PGF+N+ L   +   Q  ++  +  +  P
Sbjct: 57  DIAQDILDAV--------DLTDIAETPEIAGPGFLNIRLRTDWVAAQAAELAGDERLGAP 108

Query: 329 TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388
                  V+VD+S+PN+AKEMHVGHLR+T++GD ++R LE LGH V+R NH+GDWGT FG
Sbjct: 109 VPEHADTVVVDYSAPNVAKEMHVGHLRTTVVGDALARTLEKLGHRVIRQNHIGDWGTPFG 168

Query: 389 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEI---------FKKRAYQCVVAL 439
           MLI HL +   D       + D  AFY+ ++ +FD  E          F  RA + V  L
Sbjct: 169 MLIEHLLEVGEDGSEAELLVTDPNAFYQAARAKFDAAEAAGKAADGSDFASRARRRVATL 228

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGL 496
           Q  D +  + W  + ++S+  F +IYD L+VTLT+    GES Y   +E +   LE+ G+
Sbjct: 229 QSGDAESLRIWTHLVELSKGYFHRIYDMLDVTLTDADLAGESTYNDQLESVCADLEEDGI 288

Query: 497 LELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT 551
             + DG   ++     G D   +P+ + KSDGG+ Y T+DLAAIR R+ +  AD I YV 
Sbjct: 289 ARISDGALCVFPEGFTGRDEQPLPLIVRKSDGGYGYATTDLAAIRHRVHDLGADRIAYVV 348

Query: 552 DLGQGVHFRLL 562
              Q +HF+++
Sbjct: 349 GTAQELHFQMV 359



 Score =  175 bits (444), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 170/356 (47%), Gaps = 68/356 (19%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +T++GD ++R LE LGH V+R NH+GDWGT FGMLI HL +   D       + D  AFY
Sbjct: 136 TTVVGDALARTLEKLGHRVIRQNHIGDWGTPFGMLIEHLLEVGEDGSEAELLVTDPNAFY 195

Query: 625 KESKKRFDEDEI---------FKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
           + ++ +FD  E          F  RA + V  LQ  D +  + W  + ++S+  F +IYD
Sbjct: 196 QAARAKFDAAEAAGKAADGSDFASRARRRVATLQSGDAESLRIWTHLVELSKGYFHRIYD 255

Query: 676 RLNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSLT----------------------- 709
            L+VTLT+    GES Y   +E +   LE+ G   ++                       
Sbjct: 256 MLDVTLTDADLAGESTYNDQLESVCADLEEDGIARISDGALCVFPEGFTGRDEQPLPLIV 315

Query: 710 ---------------------KKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                                  LG   I YV    Q +HF+++   A+ AG L P +  
Sbjct: 316 RKSDGGYGYATTDLAAIRHRVHDLGADRIAYVVGTAQELHFQMVFATARAAGWL-PAEVE 374

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL---RRSLDKLKDKNRHTELTPTELS 802
              V  G VLGED K  +TRSG +++L  LL+E     R  +D+L+      +L   E +
Sbjct: 375 ATHVKIGSVLGEDGKILRTRSGASLRLMALLEEATATARGVIDELR-----PDLPDDERA 429

Query: 803 EAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
               A+  G +KYADLS   + DY F  D+ML   GNTA YL YA  RI SIAR A
Sbjct: 430 SIAHAIGIGGVKYADLSTAHDSDYTFDLDRMLALTGNTAPYLQYAVARIRSIARKA 485



 Score =  106 bits (264), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 97/201 (48%), Gaps = 18/201 (8%)

Query: 919  EEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVF 978
            EE   + RG      +D+L+      +L   E +    A+  G +KYADLS   + DY F
Sbjct: 406  EEATATARGV-----IDELR-----PDLPDDERASIAHAIGIGGVKYADLSTAHDSDYTF 455

Query: 979  SFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTL 1038
              D+ML   GNTA YL YA  RI SIAR A        + A      +E++ E ALA TL
Sbjct: 456  DLDRMLALTGNTAPYLQYAVARIRSIARKAAAQG----ITADGAAPRVENDAERALALTL 511

Query: 1039 LRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAE 1098
            L     L  V  D   H LC YL+ ++ AF+ FYD    +++  E     V  GRL LA 
Sbjct: 512  LEYGPTLEQVGADFEPHRLCAYLFSLAQAFTAFYDASPILKESDE----QVRAGRLALAT 567

Query: 1099 ATAKVMKKCFDILNIRTVHKM 1119
               +V+ +  D L +R   +M
Sbjct: 568  LAERVLVEGLDALGVRAPQQM 588



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 21/140 (15%)

Query: 15  LSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 73
           L++ F  A   AF PE  D    +  +      +F DFQCN AM L K    K     P 
Sbjct: 8   LTERFQSAFAAAFGPEFADADPIIRPS------QFADFQCNAAMGLAKRLGRK-----PR 56

Query: 74  DIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG-VQPP 132
           DIAQ I   V         L  + +  E A PGF+N+ L   +   Q  ++  +  +  P
Sbjct: 57  DIAQDILDAV--------DLTDIAETPEIAGPGFLNIRLRTDWVAAQAAELAGDERLGAP 108

Query: 133 TLNKKLRVLVDFSSPNIARK 152
                  V+VD+S+PN+A++
Sbjct: 109 VPEHADTVVVDYSAPNVAKE 128


>gi|325002809|ref|ZP_08123921.1| arginyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 570

 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 205/370 (55%), Gaps = 43/370 (11%)

Query: 246 DFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVN 305
           DFQ N A+AL K       +  P D+A  +A  V        S A VI  +E+A PGF+N
Sbjct: 26  DFQANGALALAK-----HAEVPPRDLAAGLADEV--------SAADVIGSVELAGPGFLN 72

Query: 306 VFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           + +       Q+   + +   GV  P   +  R +VD+S+PNIAKEMHVGHLR+TIIGD 
Sbjct: 73  ITVPDAMIWSQVAARLGDDRFGVAAPERGR--RTVVDYSAPNIAKEMHVGHLRTTIIGDC 130

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK-------SPPIADLQAFY 415
           + R+L++LG DVVR NH+GDWGTQFGMLI +L D+ PD   +       +  ++ L   Y
Sbjct: 131 LVRVLDFLGADVVRQNHLGDWGTQFGMLIQYL-DEHPDTTWRLDDLDGNTSAVSALDGLY 189

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 475
           + S+  F+ D  F  RA + VVALQ  DP     W  I   S + F+ IYDRL V LT  
Sbjct: 190 RNSRATFEADADFADRARRRVVALQSGDPATIAVWSEIVAESEKAFRGIYDRLGVLLTAD 249

Query: 476 ---GESFYQKHMEQLVPYLEKKGL-LELDDGRKIMW----GEDRGSIPMTIVKSDGGFTY 527
              GESFY   +   V  L   G+ ++ DD   I+     G D   +P+ + K DGG+ Y
Sbjct: 250 DSVGESFYNPLLTGTVDELVADGIAVDSDDALVILSNEVDGPDGEPVPLMVRKRDGGYGY 309

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
           DT+DLA IR RI + +AD ++YVTD  Q +HFRL+ E+       +R   +L  + VR  
Sbjct: 310 DTTDLATIRYRIRDLEADRLLYVTDSRQSLHFRLVFEA-------ARRAGWL-TEGVRAE 361

Query: 588 HVGDWGTQFG 597
           HV  +GT  G
Sbjct: 362 HV-PYGTVLG 370



 Score =  211 bits (537), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/355 (38%), Positives = 182/355 (51%), Gaps = 61/355 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK-------SPPI 617
           +TIIGD + R+L++LG DVVR NH+GDWGTQFGMLI +L D+ PD   +       +  +
Sbjct: 124 TTIIGDCLVRVLDFLGADVVRQNHLGDWGTQFGMLIQYL-DEHPDTTWRLDDLDGNTSAV 182

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           + L   Y+ S+  F+ D  F  RA + VVALQ  DP     W  I   S + F+ IYDRL
Sbjct: 183 SALDGLYRNSRATFEADADFADRARRRVVALQSGDPATIAVWSEIVAESEKAFRGIYDRL 242

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
            V LT     GESFY   +   V  L   G                         L + K
Sbjct: 243 GVLLTADDSVGESFYNPLLTGTVDELVADGIAVDSDDALVILSNEVDGPDGEPVPLMVRK 302

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           + G                       ++YVTD  Q +HFRL+ E A++AG L     R +
Sbjct: 303 RDGGYGYDTTDLATIRYRIRDLEADRLLYVTDSRQSLHFRLVFEAARRAGWLT-EGVRAE 361

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
            V +G VLG D + FKTR+G TV+L +LLD+ + R+   + +KN   +L P EL    + 
Sbjct: 362 HVPYGTVLGPDGRPFKTRAGGTVRLMDLLDDAVSRARAVVAEKN--PDLDPAELDRIAEQ 419

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
              G +KYADLS +R  DY F  D+M+   GNT VYL YA+TRI SI R AG  S
Sbjct: 420 AGIGGVKYADLSTSRVKDYAFDVDRMVSFTGNTGVYLQYAHTRIRSILRRAGEGS 474



 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 92/186 (49%), Gaps = 20/186 (10%)

Query: 926  RGYGLRRSLDKLKDK---------NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDY 976
            R  G  R +D L D           ++ +L P EL    +    G +KYADLS +R  DY
Sbjct: 379  RAGGTVRLMDLLDDAVSRARAVVAEKNPDLDPAELDRIAEQAGIGGVKYADLSTSRVKDY 438

Query: 977  VFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAK 1036
             F  D+M+   GNT VYL YA+TRI SI R AG  S      A    V+L+   E ALA 
Sbjct: 439  AFDVDRMVSFTGNTGVYLQYAHTRIRSILRRAGEGSH-----AVDGGVALDG-AERALAL 492

Query: 1037 TLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLL 1096
             L    +VL+ V+  L  H LC YLY+++ AF+ FY+ C  +     G    V   RL L
Sbjct: 493  ALDSYGEVLVDVSMSLEPHRLCGYLYELARAFTSFYEACPVL-----GSEDPVRGNRLAL 547

Query: 1097 AEATAK 1102
               TA+
Sbjct: 548  CRLTAR 553



 Score = 47.8 bits (112), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 18/106 (16%)

Query: 50  DFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVN 109
           DFQ N A+AL K       +  P D+A  +A  V        S A VI  +E A PGF+N
Sbjct: 26  DFQANGALALAK-----HAEVPPRDLAAGLADEV--------SAADVIGSVELAGPGFLN 72

Query: 110 VFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           + +       Q+   + +   GV  P   +  R +VD+S+PNIA++
Sbjct: 73  ITVPDAMIWSQVAARLGDDRFGVAAPERGR--RTVVDYSAPNIAKE 116


>gi|393764444|ref|ZP_10353055.1| arginyl-tRNA ligase [Alishewanella agri BL06]
 gi|392604632|gb|EIW87532.1| arginyl-tRNA ligase [Alishewanella agri BL06]
          Length = 579

 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 142/354 (40%), Positives = 202/354 (57%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD + R LE+ G  V+R NH+GDWGTQFGMLIAHL+DK  + +  +S  
Sbjct: 133 HLR----STIIGDAVVRTLEFWGDKVIRQNHMGDWGTQFGMLIAHLEDKLAEGVDLESVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++  F  ++   VV LQ  D   +K W++  D S +   ++Y +
Sbjct: 189 LADLEDFYRQAKKRFDDEAGFADKSRDYVVKLQSGDAHCQKLWQLFIDTSVKHSNEVYQK 248

Query: 677 LNVTLTE---RGESFY----QKHMEQLV---------------------------PYLEK 702
           LNVTLT+   + ES Y    Q  ++QLV                           P++ +
Sbjct: 249 LNVTLTDADIKPESAYNPMLQPIVDQLVAAGIAVEDQGALVVFLSELADKEGKPSPFIIQ 308

Query: 703 K---GNLSLTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRM 746
           K   G L  T  L              I+  TD  Q +HF+ +E  A+KAG+L  + T  
Sbjct: 309 KTGGGFLYATTDLAACQYRSHQLAADRIIIFTDARQALHFKQVELTARKAGLLRAD-TAY 367

Query: 747 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ 806
           D   FG ++GED K FKTR+G TVKL+ELL+E + R+   +++K+  +EL+  E++E  +
Sbjct: 368 DHCPFGTMMGEDGKPFKTRTGGTVKLAELLEEAVVRADAVVREKS--SELSEQEIAEIAR 425

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            V  G +K+ADLS NR  DY+FS+D ML   G TA YL YAYTR+ SI R A +
Sbjct: 426 KVGIGAVKFADLSKNRTSDYIFSWDAMLAFEGATAPYLQYAYTRVRSILRKAEV 479



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/364 (36%), Positives = 206/364 (56%), Gaps = 25/364 (6%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  +  +  Q AF  LG    +  +  +    +FGD+Q N AM+  K  K      NP  
Sbjct: 3   IKQLLANKTQDAFITLGLPAETNPAVTQSTRPEFGDYQINGAMSAAKQLK-----TNPRQ 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTL 330
           +A+ + +++  +   +        K+E+A PGF+NV L   +   ++     N     + 
Sbjct: 58  LAEQLVALLALDDLAS--------KVEIAGPGFINVTLKPEWLAGELAQAASNARLGVSA 109

Query: 331 NKKLR-VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
           N + + ++VD+S+PN+AKEMHVGHLRSTIIGD + R LE+ G  V+R NH+GDWGTQFGM
Sbjct: 110 NPQPQTIVVDYSAPNLAKEMHVGHLRSTIIGDAVVRTLEFWGDKVIRQNHMGDWGTQFGM 169

Query: 390 LIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
           LIAHL+DK  + +  +S  +ADL+ FY+++KKRFD++  F  ++   VV LQ  D   +K
Sbjct: 170 LIAHLEDKLAEGVDLESVALADLEDFYRQAKKRFDDEAGFADKSRDYVVKLQSGDAHCQK 229

Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
            W++  D S +   ++Y +LNVTLT+   + ES Y   ++ +V  L   G+   D G  +
Sbjct: 230 LWQLFIDTSVKHSNEVYQKLNVTLTDADIKPESAYNPMLQPIVDQLVAAGIAVEDQGALV 289

Query: 506 MW------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           ++       E + S P  I K+ GGF Y T+DLAA + R  +  AD I+  TD  Q +HF
Sbjct: 290 VFLSELADKEGKPS-PFIIQKTGGGFLYATTDLAACQYRSHQLAADRIIIFTDARQALHF 348

Query: 560 RLLE 563
           + +E
Sbjct: 349 KQVE 352



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 101/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + +EL+  E++E  + V  G +K+ADLS NR  DY+FS+D ML   G TA YL YAYT
Sbjct: 409  REKSSELSEQEIAEIARKVGIGAVKFADLSKNRTSDYIFSWDAMLAFEGATAPYLQYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ SI R A +        +   P+ L  E+E  LA  +LR  + L  V +D   + LC 
Sbjct: 469  RVRSILRKAEVAD------SFQAPIVLTAEQERLLAVKILRFEETLQQVMKDAQPNLLCS 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++++ F  FY+ C  ++   +G        RL+L+  +A+++ K  ++L I  + +M
Sbjct: 523  YLYELASLFMTFYEACPILK---DGVDPAERDSRLMLSIISARLLAKGLNLLGIEVMERM 579



 Score = 48.5 bits (114), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 129/323 (39%), Gaps = 56/323 (17%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  +  +  Q AF  LG    +  +  +    +FGD+Q N AM+  K       K NP  
Sbjct: 3   IKQLLANKTQDAFITLGLPAETNPAVTQSTRPEFGDYQINGAMSAAKQL-----KTNPRQ 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTL 134
           +A+ + +++  +   +        K+E A PGF+NV L   +   ++     N     + 
Sbjct: 58  LAEQLVALLALDDLAS--------KVEIAGPGFINVTLKPEWLAGELAQAASNARLGVSA 109

Query: 135 NKKLR-VLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSSSQTKGT 193
           N + + ++VD+S+PN+A++      HL S I    I  A+    +  G      +     
Sbjct: 110 NPQPQTIVVDYSAPNLAKE--MHVGHLRSTI----IGDAVVRTLEFWGDKVIRQNHMGDW 163

Query: 194 AKKMNVPVSDRMSVRDYLSDVFTHAV---QVAFPELG----------DKTASVASTNEKY 240
             +  + ++       +L D     V    VA  +L           D  A  A  +  Y
Sbjct: 164 GTQFGMLIA-------HLEDKLAEGVDLESVALADLEDFYRQAKKRFDDEAGFADKSRDY 216

Query: 241 VHKF--GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVT-----SELATNPSLAKVI 293
           V K   GD  C     L ++F D   K +  ++ Q +   +T      E A NP L  ++
Sbjct: 217 VVKLQSGDAHCQK---LWQLFIDTSVKHSN-EVYQKLNVTLTDADIKPESAYNPMLQPIV 272

Query: 294 DK-----IEVAKPGFVNVFLSRV 311
           D+     I V   G + VFLS +
Sbjct: 273 DQLVAAGIAVEDQGALVVFLSEL 295


>gi|422359601|ref|ZP_16440238.1| arginyl-tRNA synthetase, partial [Escherichia coli MS 110-3]
 gi|315286577|gb|EFU46012.1| arginyl-tRNA synthetase [Escherichia coli MS 110-3]
          Length = 543

 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 142/389 (36%), Positives = 209/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FG++Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGNYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  E ++  + +      + +K  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVAMPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H+  
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHHM-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 369 ----FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 86/147 (58%), Gaps = 6/147 (4%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNC 1075
             R+   H +C YLYD++  FS FY++C
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHC 537



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FG++Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGNYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +      + +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVAMPEKQTIVVDYSAPNVAKE 127


>gi|414071604|ref|ZP_11407569.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. Bsw20308]
 gi|410805966|gb|EKS11967.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. Bsw20308]
          Length = 580

 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 139/357 (38%), Positives = 201/357 (56%), Gaps = 60/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD+I R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   S  
Sbjct: 133 HLR----STIIGDSIVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDSVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y R
Sbjct: 189 LADLETFYRDAKKRFDDEEGFADKARDYVVKLQGGDTHCEKLWKLFIATSVKHSEEVYKR 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSL------------------------- 708
           LNVTLT+     ES Y   +  ++  L+ K N+++                         
Sbjct: 249 LNVTLTQADIMAESAYNAELNDIISLLKDK-NIAVESQGAQVVFLDELANKDGEPSAFIV 307

Query: 709 --------------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                               + KLG   I+   D  Q +HF  +E  A+KAG+L  ++T 
Sbjct: 308 QKSGGGFLYATTDLAACDYRSNKLGADRILIFVDARQNLHFNQVELTARKAGLLR-DETS 366

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805
            +F  FG ++G D K FKTR+G TVKL++LL+E + R+  KL +  R ++L+ ++ SE  
Sbjct: 367 YEFCPFGTMMGADNKPFKTRTGGTVKLADLLEESINRAAAKLAE--RESDLSDSDRSEIA 424

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           + V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTRI SI R +G+++
Sbjct: 425 RKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRIRSIFRKSGVDA 481



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 188/333 (56%), Gaps = 27/333 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K  K      NP ++AQ I          N  ++ +  K E+A PG
Sbjct: 35  QFGDYQINAAMGAAKKMK-----SNPRELAQKIID--------NLDVSDIAQKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLN---KKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L   +  + ++    N      +N   K  +V+VD+SSPN+AKEMHVGHLRSTII
Sbjct: 82  FINIHLKPEFLAQSVQ--AANSDAKLAVNEHAKPQKVVVDYSSPNLAKEMHVGHLRSTII 139

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKES 418
           GD+I R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   S  +ADL+ FY+++
Sbjct: 140 GDSIVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDSVALADLETFYRDA 199

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---R 475
           KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y RLNVTLT+    
Sbjct: 200 KKRFDDEEGFADKARDYVVKLQGGDTHCEKLWKLFIATSVKHSEEVYKRLNVTLTQADIM 259

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTS 530
            ES Y   +  ++  L+ K +     G ++++      +D       + KS GGF Y T+
Sbjct: 260 AESAYNAELNDIISLLKDKNIAVESQGAQVVFLDELANKDGEPSAFIVQKSGGGFLYATT 319

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           DLAA   R  +  AD I+   D  Q +HF  +E
Sbjct: 320 DLAACDYRSNKLGADRILIFVDARQNLHFNQVE 352



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 111/190 (58%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            + R+  KL +  R ++L+ ++ SE  + V  G +KYADLS +R  DY+F++D ML   G 
Sbjct: 401  INRAAAKLAE--RESDLSDSDRSEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGA 458

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA YL YAYTRI SI R +G+++  L     ++ V +   +E ALA  LL++ +VL L+ 
Sbjct: 459  TAPYLQYAYTRIRSIFRKSGVDATTL-----NSDVVIVEPQEKALALKLLQLEEVLDLMI 513

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             +   H LC YLY++++ +  FY+ C  ++   EG   +V   RL+L    +K ++   D
Sbjct: 514  NEATPHVLCGYLYELASLYMTFYEACPVLK---EGVEPSVRDSRLVLCNLVSKTLETGLD 570

Query: 1110 ILNIRTVHKM 1119
            +L I  + +M
Sbjct: 571  LLGIEVMEQM 580



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 26/133 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K  K      NP ++AQ I          N  ++ +  K E A PG
Sbjct: 35  QFGDYQINAAMGAAKKMK-----SNPRELAQKIID--------NLDVSDIAQKTEIAGPG 81

Query: 107 FVNV-----FLSR-VYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+     FL++ V A      + VN    P      +V+VD+SSPN+A++      HL
Sbjct: 82  FINIHLKPEFLAQSVQAANSDAKLAVNEHAKPQ-----KVVVDYSSPNLAKE--MHVGHL 134

Query: 161 PSQIHDILISKAI 173
            S I    I +A+
Sbjct: 135 RSTIIGDSIVRAL 147


>gi|261210003|ref|ZP_05924302.1| arginyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260840949|gb|EEX67486.1| arginyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 592

 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 148/389 (38%), Positives = 212/389 (54%), Gaps = 40/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 50  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 96

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FLS  +   Q +  + +   GV P        ++ D+S+PN+AKEMHVGHLRSTII
Sbjct: 97  FINIFLSEEFLAAQAEAALADERLGVAPEAPKT---IVADYSAPNVAKEMHVGHLRSTII 153

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESK
Sbjct: 154 GDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFYRESK 213

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
           K +DEDE F + A   VV LQ  D      W+ + DV+    Q+ YDRLNV+LT     G
Sbjct: 214 KLYDEDEQFAETARNYVVKLQGGDAFCLDMWKKLVDVTMIQNQRNYDRLNVSLTRENVMG 273

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL   DDG ++++ +   ++   PM ++  K DGGF Y T+D
Sbjct: 274 ESMYNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFKNKDGEPMGVIVQKRDGGFLYTTTD 333

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  +V   +H   
Sbjct: 334 IACAKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPEEVSLEHHA-- 384

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 385 ----FGMMLGKDGRPFKTRAGGTVRLADL 409



 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 185/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH+V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 150 STIIGDAVVRTLEFLGHNVIRANHIGDWGTQFGMLIANLERVQKASGEVSMELSDLEAFY 209

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  D      W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 210 RESKKLYDEDEQFAETARNYVVKLQGGDAFCLDMWKKLVDVTMIQNQRNYDRLNVSLTRE 269

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + K+ G    
Sbjct: 270 NVMGESMYNDMLPLIVSDLKAKGLAVEDDGAQVVFLDEFKNKDGEPMGVIVQKRDGGFLY 329

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 330 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PEEVSLEHHAFGMM 388

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   EL+  E +     VA   +K
Sbjct: 389 LGKDGRPFKTRAGGTVRLADLLDEAEDRAKALIESKN--PELSAEEKANIANTVAMAAVK 446

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 447 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 493



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 107/192 (55%), Gaps = 15/192 (7%)

Query: 934  LDKLKDK------NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDR 987
            LD+ +D+      +++ EL+  E +     VA   +KYADLS +R  DYVF +D ML   
Sbjct: 410  LDEAEDRAKALIESKNPELSAEEKANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFE 469

Query: 988  GNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLML 1047
            GNTA Y+ YAYTR+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  
Sbjct: 470  GNTAPYMQYAYTRVASVFAKAGVDMNEL-----AGHIQITEEKEKALIAKLLQFEEAVQS 524

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
            V R+   H +C YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+ 
Sbjct: 525  VAREGQPHIMCSYLFELAGIFSSFYEACPILVAEQE----SVKQSRLKLAALTAKTIKQG 580

Query: 1108 FDILNIRTVHKM 1119
              +L I T+ +M
Sbjct: 581  LALLGIDTLERM 592



 Score = 45.4 bits (106), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 21/121 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 50  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 96

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           F+N+FLS  +   Q +  + +   GV P        ++ D+S+PN+A++      HL S 
Sbjct: 97  FINIFLSEEFLAAQAEAALADERLGVAPEAPKT---IVADYSAPNVAKE--MHVGHLRST 151

Query: 164 I 164
           I
Sbjct: 152 I 152


>gi|268589751|ref|ZP_06123972.1| arginine--tRNA ligase [Providencia rettgeri DSM 1131]
 gi|291314906|gb|EFE55359.1| arginine--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 576

 Score =  229 bits (585), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 167/523 (31%), Positives = 260/523 (49%), Gaps = 66/523 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAILSDKISAAMLAA----GAPEDSDALVRQSAKAQFGDYQANGVMGAAKKMGIA-- 54

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+        +L  +  L  +  K+E+A PGF+N+FL   +  + +++ + + 
Sbjct: 55  ---PRQLAE--------QLVNHLDLEGIASKVEIAGPGFINIFLEPAWVEKHVEEALASQ 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+ P    K   +++D+S+PN+AK+MHVGHLRSTIIGD  +R  E++GH V+R NHVG
Sbjct: 104 RLGIAPV---KPETIVIDYSAPNVAKQMHVGHLRSTIIGDAAARTQEFIGHKVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       +ADL+ FY+E+KK +DEDE F  RA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KVQNEDATDMALADLEEFYREAKKHYDEDEEFAVRARGYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   ++ W  + D++ +  Q+ Y RLNVTLTE    GES Y   +  +V  L+ KGL  
Sbjct: 220 GDEYCRQMWRKLVDITMQQNQETYRRLNVTLTEDDVMGESLYNSMLPGIVADLKAKGLAV 279

Query: 499 LDDGRKIMWGED---RGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
             +G  +++ ++   +   PM ++  K DGGF Y T+D+A  + R E   AD  +Y  D 
Sbjct: 280 ESEGATVVFLDEFKNKEGEPMGVIVQKKDGGFLYTTTDIACAKYRYETLHADRSLYYIDS 339

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 613
            Q  H  L++  TI+     R   Y+   +   +H+      FGM++      F      
Sbjct: 340 RQ--HQHLMQAWTIV-----RKAGYIPESMALEHHM------FGMMLGKDGKPFKTRTGG 386

Query: 614 SPPIADL--------QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDV 665
           +  ++DL        QA  +E      EDE+        + A++              D+
Sbjct: 387 TVRLSDLLDEAVERAQALIREKNPDMPEDELLNVANVVGIGAVK------------YADL 434

Query: 666 SR-RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLS 707
           S+ R    I+D  N+   E   + Y ++    V  + KK NL+
Sbjct: 435 SKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKKANLT 477



 Score =  218 bits (555), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 190/368 (51%), Gaps = 58/368 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R  E++GH V+R NHVGDWGTQFGMLIA+L+ K  +       +ADL+ FY
Sbjct: 135 STIIGDAAARTQEFIGHKVIRANHVGDWGTQFGMLIAYLE-KVQNEDATDMALADLEEFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F  RA   VV LQ  D   ++ W  + D++ +  Q+ Y RLNVTLTE 
Sbjct: 194 REAKKHYDEDEEFAVRARGYVVKLQSGDEYCRQMWRKLVDITMQQNQETYRRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNSMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIVQKKDGGFLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRSLYYIDSRQHQHLMQAWTIVRKAGYI-PESMALEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TV+LS+LLDE + R+   +++KN   ++   EL      V  G +K
Sbjct: 373 LGKDGKPFKTRTGGTVRLSDLLDEAVERAQALIREKN--PDMPEDELLNVANVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP----DP 870
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ASI + A +   D   P    DP
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKKANLTHADLTLPISLQDP 490

Query: 871 SQSEVEDR 878
            +  +  R
Sbjct: 491 REIALATR 498



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ ++   EL      V  G +KYADLS NR  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 406  REKNPDMPEDELLNVANVVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI + A +   DL     + P+SL+  +E ALA  LL+  + ++ V RD   H +C 
Sbjct: 466  RVASIFKKANLTHADL-----TLPISLQDPREIALATRLLQFEETILTVARDGTPHVMCA 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY+++  FS FY++C  +  D E + ++    RL LA  T K +K   D L I TV +M
Sbjct: 521  YLYELAGLFSGFYEHCPILSADDEAQRQS----RLKLAALTQKTLKTGLDTLGIETVERM 576



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAILSDKISAAMLAA----GAPEDSDALVRQSAKAQFGDYQANGVMGAAKKMGIA-- 54

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+        +L  +  L  +  K+E A PGF+N+FL   +  + +++ + + 
Sbjct: 55  ---PRQLAE--------QLVNHLDLEGIASKVEIAGPGFINIFLEPAWVEKHVEEALASQ 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             G+ P    K   +++D+S+PN+A++
Sbjct: 104 RLGIAPV---KPETIVIDYSAPNVAKQ 127


>gi|417390337|ref|ZP_12153851.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Minnesota str. A4-603]
 gi|353619050|gb|EHC69565.1| Arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Minnesota str. A4-603]
          Length = 533

 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 137/353 (38%), Positives = 202/353 (57%), Gaps = 28/353 (7%)

Query: 279 VTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLR 335
           +  ++ T+  L+ +  K+E+A PGF+N+FL   +  EQ++  + +   GV  PT   +  
Sbjct: 14  LAEQVLTHLDLSGIASKVEIAGPGFINIFLEPAFLAEQVQQALASDRLGVSQPT---RQT 70

Query: 336 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQ 395
           ++VD+S+PN+AKEMHVGHLRSTIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+
Sbjct: 71  IVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLE 130

Query: 396 DKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICD 455
            +  +       +ADL+ FY+++KK +DEDE F +RA   VV LQ  D  +++ W  + D
Sbjct: 131 KQQQEN-AGDMALADLEGFYRDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVD 189

Query: 456 VSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED-- 510
           ++    Q  YDRLNVTLT     GES Y   +  +V  L+ KGL    +G  +++ ++  
Sbjct: 190 ITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFK 249

Query: 511 -RGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTI 567
            +   PM ++  K DGG+ Y T+D+A  + R E   AD ++Y  D  Q  H  L++  TI
Sbjct: 250 NKEGDPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTI 307

Query: 568 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +     R   Y+  D V L H       FGM++      F      +  +ADL
Sbjct: 308 V-----RKAGYV-PDSVPLEH-----HMFGMMLGKDGKPFKTRAGGTVKLADL 349



 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 91  STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 149

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 150 RDAKKHYDEDEAFAERARNYVVKLQSGDAYFREMWRKLVDITMTQNQITYDRLNVTLTRD 209

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 210 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 269

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 270 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 328

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 329 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 386

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 387 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 435



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 353  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 410

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ + L     S PV +  ++E  LA  LL+  + L +V
Sbjct: 411  NTAPYMQYAYTRVLSVFRKADIDEQAL----ASAPVIISEDREAQLAARLLQFEETLTVV 466

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 467  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 520

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 521  GLDTLGIETVERM 533



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 83  VTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLR 139
           +  ++ T+  L+ +  K+E A PGF+N+FL   +  EQ++  + +   GV  PT   +  
Sbjct: 14  LAEQVLTHLDLSGIASKVEIAGPGFINIFLEPAFLAEQVQQALASDRLGVSQPT---RQT 70

Query: 140 VLVDFSSPNIARK 152
           ++VD+S+PN+A++
Sbjct: 71  IVVDYSAPNVAKE 83


>gi|395647804|ref|ZP_10435654.1| arginyl-tRNA ligase [Pseudomonas extremaustralis 14-3 substr.
           14-3b]
          Length = 578

 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 156/404 (38%), Positives = 224/404 (55%), Gaps = 43/404 (10%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V +T +K     GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQALTQLVNEGVLPEGLTPAIQVENTRDK---THGDFASNIAMMLAK---PAGM 57

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
           K  P D+A+ I     + L  +P ++K     E+A PGF+NVF +      ++   + + 
Sbjct: 58  K--PRDLAEKI----IAALPADPQVSKA----EIAGPGFINVFQNTQALASRLDAALADA 107

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GV+    ++  RV++D S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG  V+R NHVG
Sbjct: 108 RIGVRKAGASQ--RVVIDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDTVIRQNHVG 165

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGML+A+LQ+  P     S  ++DL+ FY+ +KKRFDE   F  RA   VV LQ 
Sbjct: 166 DWGTQFGMLMAYLQEN-P---ITSNELSDLENFYRAAKKRFDESAEFADRARGLVVKLQA 221

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D +  + W    D+S    QKIY+ LNV LT     GES Y   +  +V  L+ KGLL 
Sbjct: 222 GDKECLELWSRFRDISLAHCQKIYELLNVKLTMADVMGESAYNDDLINVVNDLKAKGLLV 281

Query: 499 LDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
             +G + ++ E     D   +P+ IVK+DGG+ Y T+DLAA+R R    KAD  +Y  D 
Sbjct: 282 ESNGAQCVFLEEFKTADGEPLPVIIVKADGGYLYATTDLAAVRYRSGVLKADRALYFVDQ 341

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            Q +HF+ + E       ++R   ++ H  + + H+G +GT  G
Sbjct: 342 RQALHFQQVFE-------VARRAGFVTHP-MHMEHMG-FGTMNG 376



 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 191/364 (52%), Gaps = 66/364 (18%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDTVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSNELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA   VV LQ  D +  + W    D+S    QKIY+ LNV LT  
Sbjct: 196 RAAKKRFDESAEFADRARGLVVKLQAGDKECLELWSRFRDISLAHCQKIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLINVVNDLKAKGLLVESNGAQCVFLEEFKTADGEPLPVIIVKADGGYLY 315

Query: 707 ------SLTKKLGIV------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                 ++  + G++      Y  D  Q +HF+ + E A++AG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGVLKADRALYFVDQRQALHFQQVFEVARRAGFVT-HPMHMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL+E   R+   +K+KN   EL   +L    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLNEAQERAYTLVKEKN--PELADADLRNIARVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG---------INSEDP 865
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G         IN E P
Sbjct: 433 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLGKDFSEVQGQINLEAP 492

Query: 866 PEPD 869
            E +
Sbjct: 493 HEQE 496



 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   +L    + V  G +KYADLS +R  DY F+FD ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPELADADLRNIARVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G +  +++       ++LE   E  LA  L +  +VL  V      H LC 
Sbjct: 468  RVAGVFRKLGKDFSEVQ-----GQINLEAPHEQELAAKLAQFGEVLNSVGEKGTPHILCT 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLY+++  FS FY+NC  +  D E + ++    RL LA    + +K+
Sbjct: 523  YLYEVAGLFSSFYENCPILTADDEAQKQS----RLRLAALAGRTLKQ 565



 Score = 44.7 bits (104), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 22/147 (14%)

Query: 10  SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           ++R  +    T  V +   PE       V +T +K     GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQALTQLVNEGVLPEGLTPAIQVENTRDK---THGDFASNIAMMLAK---PAGM 57

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
           K  P D+A+ I     + L  +P ++K     E A PGF+NVF +      ++   + + 
Sbjct: 58  K--PRDLAEKI----IAALPADPQVSKA----EIAGPGFINVFQNTQALASRLDAALADA 107

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             GV+    ++  RV++D S+PN+A++
Sbjct: 108 RIGVRKAGASQ--RVVIDLSAPNLAKE 132


>gi|375109112|ref|ZP_09755366.1| arginyl-tRNA synthetase [Alishewanella jeotgali KCTC 22429]
 gi|374571298|gb|EHR42427.1| arginyl-tRNA synthetase [Alishewanella jeotgali KCTC 22429]
          Length = 579

 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 142/354 (40%), Positives = 202/354 (57%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD + R LE+ G  V+R NH+GDWGTQFGMLIAHL+DK  + +  +S  
Sbjct: 133 HLR----STIIGDAVVRTLEFWGDKVIRQNHMGDWGTQFGMLIAHLEDKLAEGVDLESVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++  F  ++   VV LQ  D   +K W++  D S +   ++Y +
Sbjct: 189 LADLEDFYRQAKKRFDDEAGFADKSRDYVVKLQSGDAHCQKLWQLFIDTSVKHSNEVYQK 248

Query: 677 LNVTLTE---RGESFY----QKHMEQLV---------------------------PYLEK 702
           LNVTLT+   + ES Y    Q  ++QLV                           P++ +
Sbjct: 249 LNVTLTDADIKPESAYNPMLQPIVDQLVAAGIAVEDQGALVVFLSELADKEGKPSPFIIQ 308

Query: 703 K---GNLSLTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRM 746
           K   G L  T  L              I+  TD  Q +HF+ +E  A+KAG+L  + T  
Sbjct: 309 KTGGGFLYATTDLAACQYRSQQLAADRIIIFTDARQALHFKQVELTARKAGLLRAD-TAY 367

Query: 747 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ 806
           D   FG ++GED K FKTR+G TVKL+ELL+E + R+   +++K+  +EL+  E++E  +
Sbjct: 368 DHCPFGTMMGEDGKPFKTRTGGTVKLAELLEEAVVRADAVVREKS--SELSEQEIAEIAR 425

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            V  G +K+ADLS NR  DY+FS+D ML   G TA YL YAYTR+ SI R A +
Sbjct: 426 KVGIGAVKFADLSKNRTSDYIFSWDAMLAFEGATAPYLQYAYTRVRSILRKAEV 479



 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 209/370 (56%), Gaps = 37/370 (10%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  +  +  Q AF +LG    +  +  +    +FGD+Q N AM+  K  K      NP  
Sbjct: 3   IKQLLANKTQDAFIKLGLPAETNPAVTQSTRPEFGDYQINGAMSAAKQLK-----TNPRQ 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVY-AGEQIKDI------IVN 323
           +A+ + +++  +   +        K+E+A PGF+NV L   + AGE  K        +  
Sbjct: 58  LAEQLVALLALDDLAS--------KVEIAGPGFINVTLKPEWLAGELAKAASDARLGVSA 109

Query: 324 GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
             QP T      V+VD+S+PN+AKEMHVGHLRSTIIGD + R LE+ G  V+R NH+GDW
Sbjct: 110 NPQPQT------VVVDYSAPNLAKEMHVGHLRSTIIGDAVVRTLEFWGDKVIRQNHMGDW 163

Query: 384 GTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           GTQFGMLIAHL+DK  + +  +S  +ADL+ FY+++KKRFD++  F  ++   VV LQ  
Sbjct: 164 GTQFGMLIAHLEDKLAEGVDLESVALADLEDFYRQAKKRFDDEAGFADKSRDYVVKLQSG 223

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLEL 499
           D   +K W++  D S +   ++Y +LNVTLT+   + ES Y   ++ +V  L   G+   
Sbjct: 224 DAHCQKLWQLFIDTSVKHSNEVYQKLNVTLTDADIKPESAYNPMLQPIVDQLVAAGIAVE 283

Query: 500 DDGRKIMW------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
           D G  +++       E + S P  I K+ GGF Y T+DLAA + R ++  AD I+  TD 
Sbjct: 284 DQGALVVFLSELADKEGKPS-PFIIQKTGGGFLYATTDLAACQYRSQQLAADRIIIFTDA 342

Query: 554 GQGVHFRLLE 563
            Q +HF+ +E
Sbjct: 343 RQALHFKQVE 352



 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + +EL+  E++E  + V  G +K+ADLS NR  DY+FS+D ML   G TA YL YAYT
Sbjct: 409  REKSSELSEQEIAEIARKVGIGAVKFADLSKNRTSDYIFSWDAMLAFEGATAPYLQYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ SI R A +        +   P+ L  E+E  LA  +LR  + L  V +D   + LC 
Sbjct: 469  RVRSILRKAEVAD------SFQAPIVLTAEQERLLAVKILRFEETLQQVMKDAQPNLLCS 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++++ F  FY+ C  + +    K   V   RL+L+  TAK++++  D+L I  + +M
Sbjct: 523  YLYELASLFMTFYEACPILRERFNRK---VSDSRLMLSILTAKLLRQGLDLLGIEVMERM 579



 Score = 48.5 bits (114), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 131/329 (39%), Gaps = 68/329 (20%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  +  +  Q AF +LG    +  +  +    +FGD+Q N AM+  K       K NP  
Sbjct: 3   IKQLLANKTQDAFIKLGLPAETNPAVTQSTRPEFGDYQINGAMSAAKQL-----KTNPRQ 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVY-AGEQMKDI------IVN 127
           +A+ + +++  +   +        K+E A PGF+NV L   + AGE  K        +  
Sbjct: 58  LAEQLVALLALDDLAS--------KVEIAGPGFINVTLKPEWLAGELAKAASDARLGVSA 109

Query: 128 GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSS 187
             QP T      V+VD+S+PN+A++      HL S I    I  A+    +  G      
Sbjct: 110 NPQPQT------VVVDYSAPNLAKE--MHVGHLRSTI----IGDAVVRTLEFWGDKVIRQ 157

Query: 188 SQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAV---QVAFPELG----------DKTASVA 234
           +       +  + ++       +L D     V    VA  +L           D  A  A
Sbjct: 158 NHMGDWGTQFGMLIA-------HLEDKLAEGVDLESVALADLEDFYRQAKKRFDDEAGFA 210

Query: 235 STNEKYVHKF--GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTS-----ELATNP 287
             +  YV K   GD  C     L ++F D   K +  ++ Q +   +T      E A NP
Sbjct: 211 DKSRDYVVKLQSGDAHCQK---LWQLFIDTSVKHSN-EVYQKLNVTLTDADIKPESAYNP 266

Query: 288 SLAKVIDK-----IEVAKPGFVNVFLSRV 311
            L  ++D+     I V   G + VFLS +
Sbjct: 267 MLQPIVDQLVAAGIAVEDQGALVVFLSEL 295


>gi|418824090|ref|ZP_13379472.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 22462]
 gi|392824939|gb|EJA80701.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. CVM 22462]
          Length = 531

 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 137/353 (38%), Positives = 202/353 (57%), Gaps = 28/353 (7%)

Query: 279 VTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLR 335
           +  ++ T+  L+ +  K+E+A PGF+N+FL   +  EQ++  + +   GV  PT   +  
Sbjct: 12  LAEQVLTHLDLSGIASKVEIAGPGFINIFLEPAFLAEQVQQALASDRLGVSQPT---RQT 68

Query: 336 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQ 395
           ++VD+S+PN+AKEMHVGHLRSTIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+
Sbjct: 69  IVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLE 128

Query: 396 DKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICD 455
            +  +       +ADL+ FY+++KK +DEDE F +RA   VV LQ  D  +++ W  + D
Sbjct: 129 KQQQEN-AGDMALADLEGFYRDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVD 187

Query: 456 VSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED-- 510
           ++    Q  YDRLNVTLT     GES Y   +  +V  L+ KGL    +G  +++ ++  
Sbjct: 188 ITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFK 247

Query: 511 -RGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTI 567
            +   PM ++  K DGG+ Y T+D+A  + R E   AD ++Y  D  Q  H  L++  TI
Sbjct: 248 NKEGDPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTI 305

Query: 568 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +     R   Y+  D V L H       FGM++      F      +  +ADL
Sbjct: 306 V-----RKAGYV-PDSVPLEH-----HMFGMMLGKDGKPFKTRAGGTVKLADL 347



 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 89  STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 147

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 148 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 207

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 208 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 267

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 268 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 326

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 327 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 384

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 385 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 433



 Score =  132 bits (333), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 351  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 408

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ +    A  S PV +  ++E  LA  LL+  + L +V
Sbjct: 409  NTAPYMQYAYTRVLSVFRKADIDEQ----ALASAPVIISEDREAQLAARLLQFEETLTVV 464

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 465  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 518

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 519  GLDTLGIETVERM 531



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 83  VTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLR 139
           +  ++ T+  L+ +  K+E A PGF+N+FL   +  EQ++  + +   GV  PT   +  
Sbjct: 12  LAEQVLTHLDLSGIASKVEIAGPGFINIFLEPAFLAEQVQQALASDRLGVSQPT---RQT 68

Query: 140 VLVDFSSPNIARK 152
           ++VD+S+PN+A++
Sbjct: 69  IVVDYSAPNVAKE 81


>gi|312958530|ref|ZP_07773050.1| arginyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311287073|gb|EFQ65634.1| arginyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 578

 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 153/402 (38%), Positives = 220/402 (54%), Gaps = 39/402 (9%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    TH V +   PE       V +T +K     GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQALTHLVNEGVLPEGLTPAIQVENTRDK---THGDFASNIAMMLSK---PAGM 57

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K  P D+A+ I + + ++        + + K E+A PGF+N F +      ++   + + 
Sbjct: 58  K--PRDLAEKIIAALPAD--------ESVTKAEIAGPGFINFFQNTQALASRLDAALADA 107

Query: 325 -VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
            +      +  RV+VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG  V+R NHVGDW
Sbjct: 108 KIGARKAGEVQRVVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDSVIRQNHVGDW 167

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGML+A LQ+  P     S  ++DL+ FY+ +KKRFDE E F  RA   VV LQ  D
Sbjct: 168 GTQFGMLMASLQEN-P---ITSNELSDLENFYRAAKKRFDESEDFADRARGLVVKLQAGD 223

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELD 500
            +    W    D+S    Q+IY+ LNV LT     GES Y   +  +V  L+ KGLL   
Sbjct: 224 AECLALWNRFRDISLSHCQEIYELLNVKLTMADVMGESAYNDDLINVVNDLKAKGLLVES 283

Query: 501 DGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
           +G + ++ E     D   +P+ IVK+DGG+ Y T+DLAA+R R    KAD  +Y  D  Q
Sbjct: 284 NGAQCVFLEEFKTADGEPLPVIIVKADGGYLYATTDLAAVRYRSGVLKADRALYFVDQRQ 343

Query: 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            +HF+ + E       ++R   ++ H  + + H+G +GT  G
Sbjct: 344 ALHFQQVFE-------VARRAGFVTHP-MHMEHMG-FGTMNG 376



 Score =  213 bits (542), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 185/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDSVIRQNHVGDWGTQFGMLMASLQEN-P---ITSNELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  D +    W    D+S    Q+IY+ LNV LT  
Sbjct: 196 RAAKKRFDESEDFADRARGLVVKLQAGDAECLALWNRFRDISLSHCQEIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLINVVNDLKAKGLLVESNGAQCVFLEEFKTADGEPLPVIIVKADGGYLY 315

Query: 707 ------SLTKKLGIV------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                 ++  + G++      Y  D  Q +HF+ + E A++AG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGVLKADRALYFVDQRQALHFQQVFEVARRAGFVT-HPMHMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL+E   R+ + +K+KN   EL   +L    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLNEAQDRAYNLVKEKN--PELAEADLRNIARVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 96/175 (54%), Gaps = 11/175 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+ + +K+KN   EL   +L    + V  G +KYADLS +R  DY F+F+ ML+  GNTA
Sbjct: 402  RAYNLVKEKN--PELAEADLRNIARVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTA 459

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A + R  G   +D         +   HE+E  LA  L ++ +VL  V   
Sbjct: 460  PYLLYAYTRVAGVFRKLG---KDFSEVEGRIVLDAPHEQE--LAAKLAQLGEVLNSVGEK 514

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
               H LC YLY+++  FS FY+NC  +  D E + ++    RL LA    + +K+
Sbjct: 515  GTPHILCTYLYEVAGLFSSFYENCPILTADDEAQKQS----RLRLAALAGRTLKQ 565



 Score = 44.7 bits (104), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 18/145 (12%)

Query: 10  SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           ++R  +    TH V +   PE       V +T +K     GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQALTHLVNEGVLPEGLTPAIQVENTRDK---THGDFASNIAMMLSK---PAGM 57

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K  P D+A+ I + + ++        + + K E A PGF+N F +      ++   + + 
Sbjct: 58  K--PRDLAEKIIAALPAD--------ESVTKAEIAGPGFINFFQNTQALASRLDAALADA 107

Query: 129 -VQPPTLNKKLRVLVDFSSPNIARK 152
            +      +  RV+VD S+PN+A++
Sbjct: 108 KIGARKAGEVQRVVVDLSAPNLAKE 132


>gi|419763703|ref|ZP_14289946.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           DSM 30104]
 gi|397743632|gb|EJK90847.1| arginyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           DSM 30104]
          Length = 577

 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 135/340 (39%), Positives = 192/340 (56%), Gaps = 36/340 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTII 568
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV 352



 Score =  223 bits (567), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 137/347 (39%), Positives = 186/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL    + V  G +K
Sbjct: 373 QGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELENLAKVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ S+ R AGI+
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGID 477



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL    + V  G +KYADLS NR  DYVF +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMSADELENLAKVVGIGAVKYADLSKNRTTDYVFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AGI+      A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAGIDEN----AMIDAPVVIAEDREAQLAARLLQFEETLSVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESE----ETRNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + +   + +   GV  P       ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADNVNRALQSERLGVTKPQAQT---IVVDYSAPNVAKE 127


>gi|386772979|ref|ZP_10095357.1| arginyl-tRNA ligase [Brachybacterium paraconglomeratum LC44]
          Length = 585

 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 198/370 (53%), Gaps = 38/370 (10%)

Query: 211 LSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 269
           L++ F  A   AF PE  D    +  +      +F DFQCN AM L K    K     P 
Sbjct: 8   LTERFQSAFAAAFGPEFADADPIIRPS------QFADFQCNAAMGLAKRLGRK-----PR 56

Query: 270 DIAQSI-ASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG-VQP 327
           DIA  I A+V  S++A  P         E+A PGF+N+ L   +   Q  ++  +  +  
Sbjct: 57  DIAADILAAVDLSDMAETP---------EIAGPGFLNIRLRTDWVAAQAAELAGDARLGV 107

Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
           P   +   V++D+S+PN+AKEMHVGHLR+T++GD+I+R LE LGH VVR NH+GDWGT F
Sbjct: 108 PAPERAETVVLDYSAPNVAKEMHVGHLRTTVVGDSIARTLEKLGHTVVRQNHIGDWGTPF 167

Query: 388 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEI-------FKKRAYQCVVALQ 440
           GMLI HL +   D         D  AFY+ ++ +FD  E        F  RA + V  LQ
Sbjct: 168 GMLIEHLLEVGEDSAEAELLTTDPNAFYQAARGKFDASEAAADGESGFAARARRRVATLQ 227

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLL 497
             D +  + W  +  +S+  F +IY+ L+VTLT+    GES Y   +E     LE  G+ 
Sbjct: 228 SGDAESLRIWTHLVGLSKEYFHRIYEMLDVTLTDEDLAGESTYNDQLETTCTDLEADGIA 287

Query: 498 ELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
            + DG   ++     G D   +P+ I KSDGG+ Y T+DL AIR R+ +  AD I YV  
Sbjct: 288 RISDGALCVFPEGFTGRDEQPLPLIIRKSDGGYGYATTDLTAIRHRVRDLGADRIAYVVG 347

Query: 553 LGQGVHFRLL 562
             Q +HFR++
Sbjct: 348 TAQELHFRMV 357



 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 176/365 (48%), Gaps = 69/365 (18%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +T++GD+I+R LE LGH VVR NH+GDWGT FGMLI HL +   D         D  AFY
Sbjct: 136 TTVVGDSIARTLEKLGHTVVRQNHIGDWGTPFGMLIEHLLEVGEDSAEAELLTTDPNAFY 195

Query: 625 KESKKRFDEDEI-------FKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           + ++ +FD  E        F  RA + V  LQ  D +  + W  +  +S+  F +IY+ L
Sbjct: 196 QAARGKFDASEAAADGESGFAARARRRVATLQSGDAESLRIWTHLVGLSKEYFHRIYEML 255

Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKKGNLSLT------------------------- 709
           +VTLT+    GES Y   +E     LE  G   ++                         
Sbjct: 256 DVTLTDEDLAGESTYNDQLETTCTDLEADGIARISDGALCVFPEGFTGRDEQPLPLIIRK 315

Query: 710 -------------------KKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
                              + LG   I YV    Q +HFR++   A++AG L P++    
Sbjct: 316 SDGGYGYATTDLTAIRHRVRDLGADRIAYVVGTAQELHFRMVFATAREAGWL-PDEVEAT 374

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL---RRSLDKLKDKNRHTELTPTELSEA 804
            V  G VLGED K  +TRSG +++L  LL+E +   R  +D+L+      +L+  E  + 
Sbjct: 375 HVKIGSVLGEDGKILRTRSGASLRLMALLEEAVAKARTVIDELR-----PDLSDEERDQI 429

Query: 805 QQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR---TAGIN 861
             A+  G +KYADLS   + DY F  D+ML   GNTA YL YA  RI SI R   TAG+ 
Sbjct: 430 AHAIGIGGVKYADLSTAHDSDYTFDLDRMLALTGNTAPYLQYAVARIRSIGRRAETAGVT 489

Query: 862 SEDPP 866
           +   P
Sbjct: 490 AAAAP 494



 Score =  103 bits (256), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 97/190 (51%), Gaps = 16/190 (8%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            R  +D+L+      +L+  E  +   A+  G +KYADLS   + DY F  D+ML   GNT
Sbjct: 411  RTVIDELR-----PDLSDEERDQIAHAIGIGGVKYADLSTAHDSDYTFDLDRMLALTGNT 465

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YL YA  RI SI R A    E   V A + P+ + ++ E ALA  LL    VL  V  
Sbjct: 466  APYLQYAVARIRSIGRRA----ETAGVTAAAAPLVV-NDAERALALQLLEFGPVLASVGA 520

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCI-EKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
            +   H LC YL+ ++ AF+ FYD    + E DAE     V  GRL LA+   +V+ +  D
Sbjct: 521  EYEPHRLCAYLFSLAQAFTAFYDASPILKEDDAE-----VRAGRLALAQLAERVLVEGLD 575

Query: 1110 ILNIRTVHKM 1119
             L +    +M
Sbjct: 576  ALGVEAPQQM 585



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 23/141 (16%)

Query: 15  LSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 73
           L++ F  A   AF PE  D    +  +      +F DFQCN AM L K    K     P 
Sbjct: 8   LTERFQSAFAAAFGPEFADADPIIRPS------QFADFQCNAAMGLAKRLGRK-----PR 56

Query: 74  DIAQSI-ASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG-VQP 131
           DIA  I A+V  S++A  P         E A PGF+N+ L   +   Q  ++  +  +  
Sbjct: 57  DIAADILAAVDLSDMAETP---------EIAGPGFLNIRLRTDWVAAQAAELAGDARLGV 107

Query: 132 PTLNKKLRVLVDFSSPNIARK 152
           P   +   V++D+S+PN+A++
Sbjct: 108 PAPERAETVVLDYSAPNVAKE 128


>gi|437666130|ref|ZP_20814911.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 653049 13-19]
 gi|435264666|gb|ELO43569.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. 653049 13-19]
          Length = 525

 Score =  229 bits (584), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 137/353 (38%), Positives = 202/353 (57%), Gaps = 28/353 (7%)

Query: 279 VTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLR 335
           +  ++ T+  L+ +  K+E+A PGF+N+FL   +  EQ++  + +   GV  PT   +  
Sbjct: 6   LAEQVLTHLDLSGIASKVEIAGPGFINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQT 62

Query: 336 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQ 395
           ++VD+S+PN+AKEMHVGHLRSTIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+
Sbjct: 63  IVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLE 122

Query: 396 DKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICD 455
            +  +       +ADL+ FY+++KK +DEDE F +RA   VV LQ  D  +++ W  + D
Sbjct: 123 KQQQEN-AGDMALADLEGFYRDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVD 181

Query: 456 VSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE--- 509
           ++    Q  YDRLNVTLT     GES Y   +  +V  L+ KGL    +G  +++ +   
Sbjct: 182 ITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFK 241

Query: 510 DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTI 567
           ++   PM ++  K DGG+ Y T+D+A  + R E   AD ++Y  D  Q  H  L++  TI
Sbjct: 242 NKEGDPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTI 299

Query: 568 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +     R   Y+  D V L H       FGM++      F      +  +ADL
Sbjct: 300 V-----RKAGYV-PDSVPLEH-----HMFGMMLGKDGKPFKTRAGGTVKLADL 341



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 83  STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 141

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 142 RDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 201

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 202 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 261

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 262 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 320

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   +++  EL +   AV  G +K
Sbjct: 321 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMSADELEKLANAVGIGAVK 378

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 379 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 427



 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   +++  EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 345  ALERARRLVAEKN--PDMSADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 402

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ +    A  S PV +  ++E  LA  LL+  + L +V
Sbjct: 403  NTAPYMQYAYTRVLSVFRKADIDEQ----ALASAPVIISEDREAQLAARLLQFEETLTVV 458

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 459  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 512

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 513  GLDTLGIETVERM 525



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 83  VTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLR 139
           +  ++ T+  L+ +  K+E A PGF+N+FL   +  EQ++  + +   GV  PT   +  
Sbjct: 6   LAEQVLTHLDLSGIASKVEIAGPGFINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQT 62

Query: 140 VLVDFSSPNIARK 152
           ++VD+S+PN+A++
Sbjct: 63  IVVDYSAPNVAKE 75


>gi|387889636|ref|YP_006319934.1| arginine tRNA synthetase [Escherichia blattae DSM 4481]
 gi|414593085|ref|ZP_11442733.1| arginyl-tRNA synthetase [Escherichia blattae NBRC 105725]
 gi|386924469|gb|AFJ47423.1| arginine tRNA synthetase [Escherichia blattae DSM 4481]
 gi|403195918|dbj|GAB80385.1| arginyl-tRNA synthetase [Escherichia blattae NBRC 105725]
          Length = 577

 Score =  229 bits (584), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 141/361 (39%), Positives = 192/361 (53%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH V+R NH+GDWGTQFGMLIA+L+ +  +  +    +
Sbjct: 133 HLR----STIIGDASVRTLEFLGHKVIRANHLGDWGTQFGMLIAYLEKQQQEN-SGDMGL 187

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+E+KK +DEDE F  RA   VV LQ  D   +K W M+ D++ +  Q  Y RL
Sbjct: 188 SDLEGFYREAKKAYDEDEAFALRARSYVVKLQGGDEYCRKMWRMLVDITMKQNQATYQRL 247

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV----------------- 717
           NVTLTE    GES Y   +  +V  L+ KG  + ++   +VY+                 
Sbjct: 248 NVTLTEDDIMGESLYNPMLPGIVADLKAKGLATESEGATVVYLDEFKNKEGDPMGVIVQK 307

Query: 718 ---------TDLG---------------------QGVHFRLLEECAKKAGILNPNKTRMD 747
                    TD+                      Q  H  +     +KAG + P    M+
Sbjct: 308 KDGGYLYTTTDIACAKYRYEKLHADRMLYYIDSRQHQHLMMAWTIVRKAGYV-PESIPME 366

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTR+G TVKLS+LLDE L R+   + +KN   ++   EL +   A
Sbjct: 367 HHMFGMMLGKDGKPFKTRAGGTVKLSDLLDEALERAQRLVAEKN--PDMDAAELKKLANA 424

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+ S+ R AG++      
Sbjct: 425 VGIGAVKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGVDESSLTA 484

Query: 868 P 868
           P
Sbjct: 485 P 485



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 40/370 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + +        +  L+ +  K EVA PG
Sbjct: 35  QFGDYQANGVMAIAKKLG-----MPPRQLAEQVIN--------HLDLSGIASKTEVAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +    I + +     G+   T N +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLARNIDEAVKGDRAGI-AVTANPQ-TIVVDYSAPNVAKEMHVGHLRSTII 139

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NH+GDWGTQFGMLIA+L+ +  +  +    ++DL+ FY+E+K
Sbjct: 140 GDASVRTLEFLGHKVIRANHLGDWGTQFGMLIAYLEKQQQEN-SGDMGLSDLEGFYREAK 198

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F  RA   VV LQ  D   +K W M+ D++ +  Q  Y RLNVTLTE    G
Sbjct: 199 KAYDEDEAFALRARSYVVKLQGGDEYCRKMWRMLVDITMKQNQATYQRLNVTLTEDDIMG 258

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 259 ESLYNPMLPGIVADLKAKGLATESEGATVVYLDEFKNKEGDPMGVIVQKKDGGYLYTTTD 318

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E+  AD ++Y  D  Q  H        ++  TI R   Y+   +   +H+  
Sbjct: 319 IACAKYRYEKLHADRMLYYIDSRQHQHL-------MMAWTIVRKAGYVPESIPMEHHM-- 369

Query: 592 WGTQFGMLIA 601
               FGM++ 
Sbjct: 370 ----FGMMLG 375



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 109/191 (57%), Gaps = 11/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS +R  DYVF +D ML   G
Sbjct: 398  ALERAQRLVAEKN--PDMDAAELKKLANAVGIGAVKYADLSKSRTTDYVFDWDNMLAFEG 455

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AG++   L     + PVS+  ++E  LA  LL+  + L +V
Sbjct: 456  NTAPYMQYAYTRVLSVFRKAGVDESSL-----TAPVSISDDREALLAARLLQFEETLAVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             RD   H +C YLYD++  FS FY++C  +  +++    TV   RL LA  TAK +K   
Sbjct: 511  ARDGTPHVMCAYLYDLAGLFSSFYEHCPILSAESD----TVRQSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I T+ +M
Sbjct: 567  DTLGIETIERM 577



 Score = 45.4 bits (106), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 18/109 (16%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + +        +  L+ +  K E A PG
Sbjct: 35  QFGDYQANGVMAIAKKLG-----MPPRQLAEQVIN--------HLDLSGIASKTEVAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +    + + +     G+   T N +  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLARNIDEAVKGDRAGI-AVTANPQ-TIVVDYSAPNVAKE 128


>gi|336251051|ref|YP_004594761.1| arginyl-tRNA synthetase [Enterobacter aerogenes KCTC 2190]
 gi|334737107|gb|AEG99482.1| arginyl-tRNA synthetase [Enterobacter aerogenes KCTC 2190]
          Length = 577

 Score =  229 bits (584), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLELNGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + +   + +   GV  P   +   ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADNVNLALQSERLGVAKP---QPQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDASVRTLEFLGHRVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KG+    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGMAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 149/395 (37%), Positives = 203/395 (51%), Gaps = 60/395 (15%)

Query: 522 DGGFTYDTSDLAAIRQRIEEEKADWIVYVTD-----LGQGVHFRLLEESTIIGDTISRLL 576
           D  F  D  +LA   +R+   K      V D     + + +H   L  STIIGD   R L
Sbjct: 88  DPAFLADNVNLALQSERLGVAKPQPQTIVVDYSAPNVAKEMHVGHLR-STIIGDASVRTL 146

Query: 577 EYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEI 636
           E+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+KK +DEDE 
Sbjct: 147 EFLGHRVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFYREAKKHYDEDEA 205

Query: 637 FKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHM 693
           F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     GES Y   +
Sbjct: 206 FAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMGESLYNPML 265

Query: 694 EQLVPYLEKKG------------------------NLSLTKKLG---------------- 713
             +V  L+ KG                         + + KK G                
Sbjct: 266 PGIVADLKAKGMAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLYTTTDIACAKYRY 325

Query: 714 -------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRS 766
                  ++Y  D  Q  H        +KAG + P    ++   FG++LG+D K FKTR+
Sbjct: 326 ETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLEHHMFGMMLGKDGKPFKTRA 384

Query: 767 GDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDY 826
           G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY
Sbjct: 385 GGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDY 442

Query: 827 VFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           +F +D ML   GNTA Y+ YAYTR+ S+ R AGI+
Sbjct: 443 IFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGID 477



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AGI+   L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAGIDESALAAA----PVVISEDREAQLAARLLQFEETLAVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESE----EARNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 25/112 (22%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLELNGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGE------QMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  +      Q + + V   QP T      ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADNVNLALQSERLGVAKPQPQT------IVVDYSAPNVAKE 127


>gi|421505366|ref|ZP_15952304.1| arginyl-tRNA ligase [Pseudomonas mendocina DLHK]
 gi|400343775|gb|EJO92147.1| arginyl-tRNA ligase [Pseudomonas mendocina DLHK]
          Length = 579

 Score =  229 bits (584), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 148/412 (35%), Positives = 215/412 (52%), Gaps = 65/412 (15%)

Query: 203 DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 262
           DR++    L    T A+QV             +T +K     GDF  N AM L K    K
Sbjct: 14  DRLTADGVLPAGLTPAIQVE------------NTKDK---SHGDFASNIAMMLAKPAGVK 58

Query: 263 GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV 322
                P D+A+ + + + ++          I K+E+A PGF+N F        Q  D + 
Sbjct: 59  -----PRDLAEKLIAALPADAG--------IAKVEIAGPGFLNFF--------QNSDALA 97

Query: 323 NGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHD 373
             ++    + KL         RV+VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG  
Sbjct: 98  QRLEAALADAKLGVHKNGPAQRVVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDT 157

Query: 374 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAY 433
           V+R NHVGDWGTQFGML+A++Q+   +       +ADL+ FY+ +KKRFDE   F  RA 
Sbjct: 158 VIRQNHVGDWGTQFGMLLAYMQE---NPAAAESELADLEGFYRAAKKRFDESPEFADRAR 214

Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPY 490
           + VV LQ  D +  + W    D+S    Q +YDRL V L+    +GES Y   + Q+V  
Sbjct: 215 ELVVQLQAGDAECLRLWHRFNDISLSHCQALYDRLGVKLSMADVKGESAYNDDLPQVVAD 274

Query: 491 LEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKAD 545
           L  KGLL  D+G + ++       +   +P+ + K+ GG+ Y T+DLAA R R    KAD
Sbjct: 275 LAAKGLLTEDNGAQCVFMDEFKNAEGNPLPLIVQKAGGGYLYATTDLAATRYRAGVLKAD 334

Query: 546 WIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            ++Y  D  Q +HF+++     +   +   +E        L H+G +GT  G
Sbjct: 335 RVLYFVDQRQALHFQMVFACARLAGFVPASME--------LEHMG-FGTMNG 377



 Score =  226 bits (577), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 185/345 (53%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A++Q+   +       +ADL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYMQE---NPAAAESELADLEGFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  D +  + W    D+S    Q +YDRL V L+  
Sbjct: 197 RAAKKRFDESPEFADRARELVVQLQAGDAECLRLWHRFNDISLSHCQALYDRLGVKLSMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   + Q+V  L  KG L+                       + +K G     
Sbjct: 257 DVKGESAYNDDLPQVVADLAAKGLLTEDNGAQCVFMDEFKNAEGNPLPLIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+++  CA+ AG + P    ++ +GFG +
Sbjct: 317 ATTDLAATRYRAGVLKADRVLYFVDQRQALHFQMVFACARLAGFV-PASMELEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+ + +K KN   EL   EL    + V    +K
Sbjct: 376 NGPDGRPFKTRDGGTVKLVQLLDEAEQRAYELVKSKN--PELAEDELRRIARVVGIASVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML   GNTA YLLYAYTR+A + R  G
Sbjct: 434 YADLSKHRASDYSFNFDLMLSFEGNTAPYLLYAYTRVAGVFRKLG 478



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K+++ EL   EL    + V    +KYADLS +R  DY F+FD ML   GNTA YLLYAYT
Sbjct: 409  KSKNPELAEDELRRIARVVGIASVKYADLSKHRASDYSFNFDLMLSFEGNTAPYLLYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G   +++        ++L  E+E ALA  L +  ++L  V      H LC 
Sbjct: 469  RVAGVFRKLGKGIDEI-----GGQIALVAEQEQALAAKLAQFGELLASVADKGTPHMLCS 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  + E         RL L   T + +K+
Sbjct: 524  YLYDLAGLFSSFYENCPILAAEDE----ATRDSRLRLTALTGRTLKQ 566



 Score = 42.4 bits (98), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 45/155 (29%)

Query: 7   DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
           DR++    L    T A+QV             +T +K     GDF  N AM L K    K
Sbjct: 14  DRLTADGVLPAGLTPAIQVE------------NTKDK---SHGDFASNIAMMLAKPAGVK 58

Query: 67  GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIV 126
                P D+A+ + + + ++          I K+E A PGF+N F        Q  D + 
Sbjct: 59  -----PRDLAEKLIAALPADAG--------IAKVEIAGPGFLNFF--------QNSDALA 97

Query: 127 NGVQPPTLNKKL---------RVLVDFSSPNIARK 152
             ++    + KL         RV+VD S+PN+A++
Sbjct: 98  QRLEAALADAKLGVHKNGPAQRVVVDLSAPNLAKE 132


>gi|300175973|emb|CBK22190.2| unnamed protein product [Blastocystis hominis]
          Length = 449

 Score =  229 bits (584), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 138/346 (39%), Positives = 189/346 (54%), Gaps = 55/346 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST++GD +SR+LEY  HDV+R+NH+GDWGTQFGML+ +L++        S  I DL A Y
Sbjct: 8   STLLGDCLSRVLEYCKHDVIRINHIGDWGTQFGMLLCYLKE-INSSNGNSLSIEDLTALY 66

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV--TLT 682
           + +K RFDED  F+  ++Q VV LQ+ +P     W+ +C +S + +Q IY RL +   L 
Sbjct: 67  RAAKVRFDEDPTFRLHSHQEVVNLQKGEPWELSVWKQLCALSCQMYQTIYQRLGIDPRLK 126

Query: 683 ERGESFYQKHMEQLVPYLEKKGNLS----------------------------------- 707
            +GESFY   + +LV  LE K  L+                                   
Sbjct: 127 TQGESFYNPFLPELVKELESKNLLTDQEGSKVMFVPNFDVPLIIQKKDGGFGYDSTDLMA 186

Query: 708 ------LTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
                 +TK   I+YV D GQ +HF+ L E  +KAG     KTR+D V FG+V G+D+KK
Sbjct: 187 LKYRTLVTKADWIIYVVDSGQSLHFQQLFEAGRKAGW--AQKTRLDHVAFGLVQGKDKKK 244

Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAV------AYGCIKY 815
           FKTRSG  V+L++LLDE   R+   L+ +    E   + LSE +  V        G +KY
Sbjct: 245 FKTRSGKNVRLTDLLDEACERATAILRQR---VESGLSNLSEEEAIVQTATQLGIGGVKY 301

Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
            DL  NR  DYVFSFD+ML   G+T VYL Y + R  SI R A ++
Sbjct: 302 FDLRQNRLSDYVFSFDRMLSPEGDTNVYLQYTHARCMSILRKANMD 347



 Score =  205 bits (522), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/274 (41%), Positives = 162/274 (59%), Gaps = 18/274 (6%)

Query: 349 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 408
           MHVGHLRST++GD +SR+LEY  HDV+R+NH+GDWGTQFGML+ +L++        S  I
Sbjct: 1   MHVGHLRSTLLGDCLSRVLEYCKHDVIRINHIGDWGTQFGMLLCYLKE-INSSNGNSLSI 59

Query: 409 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 468
            DL A Y+ +K RFDED  F+  ++Q VV LQ+ +P     W+ +C +S + +Q IY RL
Sbjct: 60  EDLTALYRAAKVRFDEDPTFRLHSHQEVVNLQKGEPWELSVWKQLCALSCQMYQTIYQRL 119

Query: 469 NV--TLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFT 526
            +   L  +GESFY   + +LV  LE K LL   +G K+M+  +   +P+ I K DGGF 
Sbjct: 120 GIDPRLKTQGESFYNPFLPELVKELESKNLLTDQEGSKVMFVPNF-DVPLIIQKKDGGFG 178

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRL 586
           YD++DL A++ R    KADWI+YV D GQ +HF+ L E+        +          RL
Sbjct: 179 YDSTDLMALKYRTLVTKADWIIYVVDSGQSLHFQQLFEAGRKAGWAQK---------TRL 229

Query: 587 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +HV      FG++    + KF     K+  + DL
Sbjct: 230 DHVA-----FGLVQGKDKKKFKTRSGKNVRLTDL 258



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 10/159 (6%)

Query: 958  VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
            +  G +KY DL  NR  DYVFSFD+ML   G+T VYL Y + R  SI R A ++    R 
Sbjct: 294  LGIGGVKYFDLRQNRLSDYVFSFDRMLSPEGDTNVYLQYTHARCMSILRKANMDLNGFR- 352

Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
              +   +SL H  E++LA ++LR ND +  V +DL  + LC+YLYD+  + + FY +C  
Sbjct: 353  --ECGNISLSHRSEWSLACSILRFNDAVEKVAKDLMPNVLCKYLYDLCISLNAFYRDCRV 410

Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTV 1116
            I    +         RLLL  A  KVM++  ++L I  +
Sbjct: 411  IGTPEQ-------NSRLLLIMAAEKVMRQGLNLLGIDVI 442


>gi|193069866|ref|ZP_03050815.1| arginyl-tRNA synthetase [Escherichia coli E110019]
 gi|192956766|gb|EDV87220.1| arginyl-tRNA synthetase [Escherichia coli E110019]
          Length = 577

 Score =  229 bits (584), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 142/389 (36%), Positives = 208/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  + ++  + +        +K  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLDVATPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H+  
Sbjct: 318 IACAKYRYESLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHHM-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 369 ----FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYESLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLALEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLALEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +        +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLDVATPEKQTIVVDYSAPNVAKE 127


>gi|432674955|ref|ZP_19910423.1| arginyl-tRNA synthetase [Escherichia coli KTE142]
 gi|431214901|gb|ELF12643.1| arginyl-tRNA synthetase [Escherichia coli KTE142]
          Length = 577

 Score =  229 bits (583), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 142/389 (36%), Positives = 208/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  + ++  + +        +K  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLDVATPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H+  
Sbjct: 318 IACAKYRYESLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHHM-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 369 ----FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYESLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +        +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLDVATPEKQTIVVDYSAPNVAKE 127


>gi|359454953|ref|ZP_09244206.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. BSi20495]
 gi|358047919|dbj|GAA80455.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. BSi20495]
          Length = 580

 Score =  229 bits (583), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 139/357 (38%), Positives = 200/357 (56%), Gaps = 60/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD+I R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   S  
Sbjct: 133 HLR----STIIGDSIVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDSVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y R
Sbjct: 189 LADLETFYRDAKKRFDDEEGFADKARDYVVKLQGGDTHCEKLWKLFIATSVKHSEEVYKR 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSL------------------------- 708
           LNVTLT+     ES Y   +  ++  L+ K N+++                         
Sbjct: 249 LNVTLTQADIMAESAYNAELNDIISLLKDK-NIAVESQGAQVVFLDELANKDGEPSAFIV 307

Query: 709 --------------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                               + KLG   I+   D  Q +HF  +E  A+KAG+L  ++T 
Sbjct: 308 QKSGGGFLYATTDLAACDYRSNKLGADRILIFVDARQNLHFNQVELTARKAGLLR-DETS 366

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805
            +F  FG ++G D K FKTR+G TVKL++LL+E + R+  KL +  R ++L+  + SE  
Sbjct: 367 YEFCPFGTMMGADNKPFKTRTGGTVKLADLLEESINRAAAKLAE--RESDLSDNDRSEIA 424

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           + V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTRI SI R +G+++
Sbjct: 425 RKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRIRSIFRKSGVDA 481



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 188/336 (55%), Gaps = 33/336 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K  K      NP ++AQ I          N  ++ +  K E+A PG
Sbjct: 35  QFGDYQINAAMGAAKKMK-----SNPRELAQKIID--------NLDVSDIAQKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIK------DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+ L   +  + ++       + VN    P      +V+VD+SSPN+AKEMHVGHLRS
Sbjct: 82  FINIHLKPEFLAQSVQAANSDAKLAVNEHANPQ-----KVVVDYSSPNLAKEMHVGHLRS 136

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFY 415
           TIIGD+I R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   S  +ADL+ FY
Sbjct: 137 TIIGDSIVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDSVALADLETFY 196

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           +++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y RLNVTLT+ 
Sbjct: 197 RDAKKRFDDEEGFADKARDYVVKLQGGDTHCEKLWKLFIATSVKHSEEVYKRLNVTLTQA 256

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
               ES Y   +  ++  L+ K +     G ++++      +D       + KS GGF Y
Sbjct: 257 DIMAESAYNAELNDIISLLKDKNIAVESQGAQVVFLDELANKDGEPSAFIVQKSGGGFLY 316

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
            T+DLAA   R  +  AD I+   D  Q +HF  +E
Sbjct: 317 ATTDLAACDYRSNKLGADRILIFVDARQNLHFNQVE 352



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 111/190 (58%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            + R+  KL +  R ++L+  + SE  + V  G +KYADLS +R  DY+F++D ML   G 
Sbjct: 401  INRAAAKLAE--RESDLSDNDRSEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGA 458

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA YL YAYTRI SI R +G+++  L     ++ V++   +E ALA  LL++ +VL L+ 
Sbjct: 459  TAPYLQYAYTRIRSIFRKSGVDATTL-----NSDVAIVEPQEKALALKLLQLEEVLDLMI 513

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             +   H LC YLY++++ +  FY+ C  ++   EG   +V   RL+L    ++ ++   D
Sbjct: 514  NEATPHVLCGYLYELASLYMTFYEACPVLK---EGVEPSVRDSRLVLCNLVSRTLETGLD 570

Query: 1110 ILNIRTVHKM 1119
            +L I  + +M
Sbjct: 571  LLGIEVMEQM 580



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 26/133 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K  K      NP ++AQ I          N  ++ +  K E A PG
Sbjct: 35  QFGDYQINAAMGAAKKMK-----SNPRELAQKIID--------NLDVSDIAQKTEIAGPG 81

Query: 107 FVNV-----FLSR-VYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+     FL++ V A      + VN    P      +V+VD+SSPN+A++      HL
Sbjct: 82  FINIHLKPEFLAQSVQAANSDAKLAVNEHANPQ-----KVVVDYSSPNLAKE--MHVGHL 134

Query: 161 PSQIHDILISKAI 173
            S I    I +A+
Sbjct: 135 RSTIIGDSIVRAL 147


>gi|444350814|ref|YP_007386958.1| Arginyl-tRNA synthetase (EC 6.1.1.19) [Enterobacter aerogenes
           EA1509E]
 gi|443901644|emb|CCG29418.1| Arginyl-tRNA synthetase (EC 6.1.1.19) [Enterobacter aerogenes
           EA1509E]
          Length = 577

 Score =  229 bits (583), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  + +   + +   GV  P   +   ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLADNVNLALQSERLGVAKP---QPQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDASVRTLEFLGHRVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KG+    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGMAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 149/395 (37%), Positives = 203/395 (51%), Gaps = 60/395 (15%)

Query: 522 DGGFTYDTSDLAAIRQRIEEEKADWIVYVTD-----LGQGVHFRLLEESTIIGDTISRLL 576
           D  F  D  +LA   +R+   K      V D     + + +H   L  STIIGD   R L
Sbjct: 88  DPAFLADNVNLALQSERLGVAKPQPQTIVVDYSAPNVAKEMHVGHLR-STIIGDASVRTL 146

Query: 577 EYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEI 636
           E+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+KK +DEDE 
Sbjct: 147 EFLGHRVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFYREAKKHYDEDEA 205

Query: 637 FKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHM 693
           F +RA   VV LQ  D  + + W  + D++    Q  YDRLNVTLT     GES Y   +
Sbjct: 206 FAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRDDVMGESLYNPML 265

Query: 694 EQLVPYLEKKG------------------------NLSLTKKLG---------------- 713
             +V  L+ KG                         + + KK G                
Sbjct: 266 PGIVADLKAKGMAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLYTTTDIACAKYRY 325

Query: 714 -------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRS 766
                  ++Y  D  Q  H        +KAG + P    ++   FG++LG+D K FKTR+
Sbjct: 326 ETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLEHHMFGMMLGKDGKPFKTRA 384

Query: 767 GDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDY 826
           G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY
Sbjct: 385 GGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDY 442

Query: 827 VFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           +F +D ML   GNTA Y+ YAYTR+ S+ R AGI+
Sbjct: 443 IFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGID 477



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R AGI+   L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAGIDESALAAA----PVVISEDREAQLAARLLQFEETLAVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  ++E         RL LA  TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESE----EARNSRLKLALLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 49.3 bits (116), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 25/112 (22%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  + +K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLNGIANKVEIAGPG 81

Query: 107 FVNVFLSRVYAGE------QMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  +      Q + + V   QP T      ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADNVNLALQSERLGVAKPQPQT------IVVDYSAPNVAKE 127


>gi|88858297|ref|ZP_01132939.1| arginyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88819914|gb|EAR29727.1| arginyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 580

 Score =  229 bits (583), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 137/348 (39%), Positives = 192/348 (55%), Gaps = 54/348 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGD + R LE+ G  VVR NH+GDWGTQFGMLIAHL+D     +  ++  +ADL++F
Sbjct: 136 STIIGDAVVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDLLNQGIDLEAVALADLESF 195

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y++SKKRFD++E F  +A   VV LQ  D   +K W +  + S +   ++Y +LNVTLT+
Sbjct: 196 YRDSKKRFDDEEGFADKARDYVVKLQSGDAHCEKLWRLFINTSVKHSSEVYHKLNVTLTQ 255

Query: 684 ---RGESFYQKHMEQLVPYLEKK----------------------------------GNL 706
                ES Y   +  ++  L+ K                                  G L
Sbjct: 256 DDIMAESAYNSELHNIIALLKAKNIAVESQGAQVVFLEELANKEGEPSAFIVQKSGGGFL 315

Query: 707 SLTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
             T  L              I+   D  Q +HF  +E  A+KAG+L  ++T  +F  FG 
Sbjct: 316 YATTDLAACDYRSNKLQADRILIFVDARQSLHFSQVELTARKAGLLR-DETSYEFCPFGT 374

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           ++GED K FKTRSGDTVKL++LL+E + R+  KL +  R ++L+  E +E  + V  G +
Sbjct: 375 MMGEDGKPFKTRSGDTVKLADLLEEAITRAQAKLAE--RESDLSEQERAEIARKVGIGAV 432

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  DY+F++D ML   G TA YL YAY R+ S+ R A I+
Sbjct: 433 KYADLSKNRTSDYIFNWDSMLSFEGATAPYLQYAYMRVRSLFRKANID 480



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 144/374 (38%), Positives = 204/374 (54%), Gaps = 37/374 (9%)

Query: 205 MSVRDYLSDVFTHA-VQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++R  L      A V    PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRQLLVQRAVAAMVAAGLPE--DTNPAVTQSTRA---QFGDYQINGAMGAAKKLK--- 52

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
              NP ++AQ I          +  L  V  ++E+A PGF+N+ L   +   Q+  +  N
Sbjct: 53  --ANPRELAQKIID--------HLDLDDVAAQLEIAGPGFINIHLKPEFLAAQL--VAAN 100

Query: 324 -----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
                GVQ     K  +V+VD+SSPN+AKEMHVGHLRSTIIGD + R LE+ G  VVR N
Sbjct: 101 QDEKLGVQVHA--KAQKVVVDYSSPNLAKEMHVGHLRSTIIGDAVVRALEFRGDTVVRQN 158

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           H+GDWGTQFGMLIAHL+D     +  ++  +ADL++FY++SKKRFD++E F  +A   VV
Sbjct: 159 HMGDWGTQFGMLIAHLEDLLNQGIDLEAVALADLESFYRDSKKRFDDEEGFADKARDYVV 218

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKK 494
            LQ  D   +K W +  + S +   ++Y +LNVTLT+     ES Y   +  ++  L+ K
Sbjct: 219 KLQSGDAHCEKLWRLFINTSVKHSSEVYHKLNVTLTQDDIMAESAYNSELHNIIALLKAK 278

Query: 495 GLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
            +     G ++++ E+     G     IV KS GGF Y T+DLAA   R  + +AD I+ 
Sbjct: 279 NIAVESQGAQVVFLEELANKEGEPSAFIVQKSGGGFLYATTDLAACDYRSNKLQADRILI 338

Query: 550 VTDLGQGVHFRLLE 563
             D  Q +HF  +E
Sbjct: 339 FVDARQSLHFSQVE 352



 Score = 97.8 bits (242), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 105/191 (54%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+  KL +  R ++L+  E +E  + V  G +KYADLS NR  DY+F++D ML   G
Sbjct: 400  AITRAQAKLAE--RESDLSEQERAEIARKVGIGAVKYADLSKNRTSDYIFNWDSMLSFEG 457

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
             TA YL YAY R+ S+ R A I+   L  A     +++   +E ALA  LL++ +VL  +
Sbjct: 458  ATAPYLQYAYMRVRSLFRKANIDVSTLNAA-----ITIAEPQEKALALKLLQLEEVLDQM 512

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
              +   H LC YLY++++ +  FY+ C  ++ D   +++     RL+L    A  +++  
Sbjct: 513  INEATPHVLCAYLYELASLYMTFYEACPVLKDDISTQLR---DSRLVLCNLVANTLQQGL 569

Query: 1109 DILNIRTVHKM 1119
             +L I  + +M
Sbjct: 570  GLLGIEVMEQM 580



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 30/162 (18%)

Query: 9   MSVRDYLSDVFTHA-VQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++R  L      A V    PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRQLLVQRAVAAMVAAGLPE--DTNPAVTQSTRA---QFGDYQINGAMGAAKKLK--- 52

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
              NP ++AQ I          +  L  V  ++E A PGF+N+ L   +   Q+  +  N
Sbjct: 53  --ANPRELAQKIID--------HLDLDDVAAQLEIAGPGFINIHLKPEFLAAQL--VAAN 100

Query: 128 -----GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
                GVQ     K  +V+VD+SSPN+A++      HL S I
Sbjct: 101 QDEKLGVQVHA--KAQKVVVDYSSPNLAKE--MHVGHLRSTI 138


>gi|443471192|ref|ZP_21061265.1| Arginyl-tRNA synthetase [Pseudomonas pseudoalcaligenes KF707]
 gi|442901095|gb|ELS27094.1| Arginyl-tRNA synthetase [Pseudomonas pseudoalcaligenes KF707]
          Length = 579

 Score =  229 bits (583), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 139/345 (40%), Positives = 189/345 (54%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A++Q++ P  +     +ADL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDRVIRQNHVGDWGTQFGMLLAYMQEQ-P--VGSDAELADLEGFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  DP+    W    D+S    Q +YDRL V LT  
Sbjct: 197 RAAKKRFDESGEFADRARELVVKLQAGDPECLSLWTRFNDISLSHCQAVYDRLGVKLTMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   + Q+V  L  KG L+                       + +K G     
Sbjct: 257 DVKGESAYNDDLPQVVEDLRAKGLLTESDGALCVFMDEFKNAEGNPLPLIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q +HF+++   A+ AG + P+   M+ +GFG +
Sbjct: 317 ATTDLAATRYRSGVLKADRALYFVDQRQALHFQMVFAAARLAGFVRPD-FEMEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+ + +K KN   +L   EL +  +AV    +K
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLDEAEQRAFELVKGKN--PDLDDAELRQIARAVGISAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML   GNTA YLLYAYTR+AS+ R  G
Sbjct: 434 YADLSKHRTSDYSFNFDLMLSFEGNTAPYLLYAYTRVASVFRKLG 478



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 202/369 (54%), Gaps = 33/369 (8%)

Query: 206 SVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T   Q    PE       V +T +K     GDF  N AM L K    K  
Sbjct: 4   TIRQLIQQALTRLTQEGVLPEGLSPAIQVENTKDK---SHGDFASNIAMMLAKPAGLK-- 58

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P D+A+ + + +  +          + K+E+A PGF+N F +     ++++  + + 
Sbjct: 59  ---PRDLAEKLINALPQD--------DQVAKVEIAGPGFLNFFQNSHALAQRLESALADD 107

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             GV+      +  V+VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG  V+R NHVG
Sbjct: 108 RLGVRKN--GPQQCVVVDLSAPNLAKEMHVGHLRSTIIGDAVARVLEFLGDRVIRQNHVG 165

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGML+A++Q++ P  +     +ADL+ FY+ +KKRFDE   F  RA + VV LQ 
Sbjct: 166 DWGTQFGMLLAYMQEQ-P--VGSDAELADLEGFYRAAKKRFDESGEFADRARELVVKLQA 222

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            DP+    W    D+S    Q +YDRL V LT    +GES Y   + Q+V  L  KGLL 
Sbjct: 223 GDPECLSLWTRFNDISLSHCQAVYDRLGVKLTMADVKGESAYNDDLPQVVEDLRAKGLLT 282

Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
             DG   ++       +   +P+ + K+ GG+ Y T+DLAA R R    KAD  +Y  D 
Sbjct: 283 ESDGALCVFMDEFKNAEGNPLPLIVQKAGGGYLYATTDLAATRYRSGVLKADRALYFVDQ 342

Query: 554 GQGVHFRLL 562
            Q +HF+++
Sbjct: 343 RQALHFQMV 351



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 105/189 (55%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+ + +K KN   +L   EL +  +AV    +KYADLS +R  DY F+FD ML   GNT
Sbjct: 402  QRAFELVKGKN--PDLDDAELRQIARAVGISAVKYADLSKHRTSDYSFNFDLMLSFEGNT 459

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYAYTR+AS+ R  G +  ++        + L  E+E ALA  L +  D L  V  
Sbjct: 460  APYLLYAYTRVASVFRKLGKDFSEV-----DGRIELVAEQEQALAAKLAQFADTLGNVAE 514

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H LC YLYD++  FS FY+NC  +  + E   K+    RL LA  T + +K+  ++
Sbjct: 515  KGVPHILCAYLYDLAGLFSSFYENCPILAAEDEATQKS----RLRLAALTGRTLKQGLEL 570

Query: 1111 LNIRTVHKM 1119
            L + T+ +M
Sbjct: 571  LGLHTLERM 579


>gi|242239601|ref|YP_002987782.1| arginyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242131658|gb|ACS85960.1| arginyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 576

 Score =  229 bits (583), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 207/373 (55%), Gaps = 47/373 (12%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +  ++         L  +  K E+A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----MPPRQLAEQVVQLL--------QLDGIAAKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII------VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL R +   Q++  +      + GV+P T      +++D+S+PN+AKEMHVGHLRS
Sbjct: 82  FINIFLDRQWLSAQLEHALSAPKLGIAGVEPQT------IVIDYSAPNVAKEMHVGHLRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD   R L +LGH V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY+
Sbjct: 136 TIIGDAAVRTLAFLGHKVIRANHVGDWGTQFGMLIAYLE-KVQNEHAGDLELSDLEAFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-- 474
           E+KK +D+D  F +RA   VV LQ  D   +  W  + D++    Q+ YDRLNVTLT+  
Sbjct: 195 EAKKHYDDDAAFAERARGYVVKLQGGDEYCRTLWRRLVDITMSQNQRNYDRLNVTLTKDD 254

Query: 475 -RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   +  +V  L+ KGL    +G  +++ E   ++   PM ++  K DGG+ Y 
Sbjct: 255 VMGESLYNDMLPGIVADLKAKGLAVESEGATVVYLEEFRNKEGEPMGVIIQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   A+ ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYETLNANRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDAVSLEH 366

Query: 589 VGDWGTQFGMLIA 601
                  FGM++ 
Sbjct: 367 -----HMFGMMLG 374



 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/354 (39%), Positives = 190/354 (53%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R L +LGH V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 135 STIIGDAAVRTLAFLGHKVIRANHVGDWGTQFGMLIAYLE-KVQNEHAGDLELSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +D+D  F +RA   VV LQ  D   +  W  + D++    Q+ YDRLNVTLT+ 
Sbjct: 194 REAKKHYDDDAAFAERARGYVVKLQGGDEYCRTLWRRLVDITMSQNQRNYDRLNVTLTKD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVADLKAKGLAVESEGATVVYLEEFRNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLNANRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDAVSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T+KLSELLDE   R+L  + +KN   ++   EL +  Q V+ G +K
Sbjct: 373 LGKDGKPFKTRAGGTIKLSELLDEAYDRALALIAEKN--PQMARAELEQLAQVVSVGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTR+ASI + AG++     +P
Sbjct: 431 YADLSKNRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASIFKRAGVDDGSLTQP 484



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 112/188 (59%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  + +KN   ++   EL +  Q V+ G +KYADLS NR  DYVF +D ML   GNTA
Sbjct: 400  RALALIAEKN--PQMARAELEQLAQVVSVGAVKYADLSKNRTTDYVFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI + AG++   L     + P+ L+ E+E ALA  LL+  + +  V R+
Sbjct: 458  PYMQYAYTRVASIFKRAGVDDGSL-----TQPIILDDERELALATRLLQFEETITTVARE 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  D++    +V   RL LA+ TA  +K   D L
Sbjct: 513  GTPHVMCAYLYDLAGLFSSFYEHCPILNADSD----SVRQSRLKLAQLTAMTLKTGLDTL 568

Query: 1112 NIRTVHKM 1119
             I+TV KM
Sbjct: 569  GIQTVEKM 576



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 27/124 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +  ++         L  +  K E A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----MPPRQLAEQVVQLL--------QLDGIAAKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII------VNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+FL R +   Q++  +      + GV+P T      +++D+S+PN+A++      HL
Sbjct: 82  FINIFLDRQWLSAQLEHALSAPKLGIAGVEPQT------IVIDYSAPNVAKE--MHVGHL 133

Query: 161 PSQI 164
            S I
Sbjct: 134 RSTI 137


>gi|433120415|ref|ZP_20306093.1| arginyl-tRNA synthetase [Escherichia coli KTE157]
 gi|431643510|gb|ELJ11202.1| arginyl-tRNA synthetase [Escherichia coli KTE157]
          Length = 577

 Score =  229 bits (583), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 210/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FG +Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGGYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FG +Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGGYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E ++  + +   GV  P   +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVQQALASDRLGVATP---EKQTIVVDYSAPNVAKE 127


>gi|191168079|ref|ZP_03029878.1| arginyl-tRNA synthetase [Escherichia coli B7A]
 gi|300924967|ref|ZP_07140893.1| arginyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|301327666|ref|ZP_07220873.1| arginyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|307314212|ref|ZP_07593822.1| arginyl-tRNA synthetase [Escherichia coli W]
 gi|309796014|ref|ZP_07690427.1| arginyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|378712680|ref|YP_005277573.1| arginyl-tRNA synthetase [Escherichia coli KO11FL]
 gi|386609265|ref|YP_006124751.1| arginyl-tRNA synthetase [Escherichia coli W]
 gi|386701152|ref|YP_006164989.1| arginyl-tRNA synthetase [Escherichia coli KO11FL]
 gi|386709738|ref|YP_006173459.1| arginyl-tRNA synthetase [Escherichia coli W]
 gi|417597010|ref|ZP_12247658.1| arginyl-tRNA synthetase [Escherichia coli 3030-1]
 gi|417608467|ref|ZP_12258973.1| arginyl-tRNA synthetase [Escherichia coli STEC_DG131-3]
 gi|422956746|ref|ZP_16969220.1| arginyl-tRNA synthetase [Escherichia coli H494]
 gi|427805010|ref|ZP_18972077.1| arginine tRNA synthetase [Escherichia coli chi7122]
 gi|427809566|ref|ZP_18976631.1| arginine tRNA synthetase [Escherichia coli]
 gi|443617956|ref|YP_007381812.1| arginyl-tRNA ligase [Escherichia coli APEC O78]
 gi|450215924|ref|ZP_21895604.1| arginyl-tRNA ligase [Escherichia coli O08]
 gi|190901877|gb|EDV61627.1| arginyl-tRNA synthetase [Escherichia coli B7A]
 gi|300418879|gb|EFK02190.1| arginyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300845761|gb|EFK73521.1| arginyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|306906181|gb|EFN36699.1| arginyl-tRNA synthetase [Escherichia coli W]
 gi|308120464|gb|EFO57726.1| arginyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|315061182|gb|ADT75509.1| arginyl-tRNA synthetase [Escherichia coli W]
 gi|323378241|gb|ADX50509.1| arginyl-tRNA synthetase [Escherichia coli KO11FL]
 gi|345355322|gb|EGW87533.1| arginyl-tRNA synthetase [Escherichia coli 3030-1]
 gi|345359057|gb|EGW91236.1| arginyl-tRNA synthetase [Escherichia coli STEC_DG131-3]
 gi|371599047|gb|EHN87837.1| arginyl-tRNA synthetase [Escherichia coli H494]
 gi|383392679|gb|AFH17637.1| arginyl-tRNA synthetase [Escherichia coli KO11FL]
 gi|383405430|gb|AFH11673.1| arginyl-tRNA synthetase [Escherichia coli W]
 gi|412963192|emb|CCK47111.1| arginine tRNA synthetase [Escherichia coli chi7122]
 gi|412969745|emb|CCJ44384.1| arginine tRNA synthetase [Escherichia coli]
 gi|443422464|gb|AGC87368.1| arginyl-tRNA ligase [Escherichia coli APEC O78]
 gi|449318764|gb|EMD08826.1| arginyl-tRNA ligase [Escherichia coli O08]
          Length = 577

 Score =  229 bits (583), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/389 (36%), Positives = 208/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  + ++  + +        +K  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLDVATPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H+  
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHHM-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 369 ----FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +        +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLDVATPEKQTIVVDYSAPNVAKE 127


>gi|424807305|ref|ZP_18232713.1| arginyl-tRNA synthetase [Vibrio mimicus SX-4]
 gi|342325247|gb|EGU21027.1| arginyl-tRNA synthetase [Vibrio mimicus SX-4]
          Length = 597

 Score =  229 bits (583), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 208/386 (53%), Gaps = 34/386 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E+A PG
Sbjct: 55  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 101

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FLS  +   Q +  + +            ++ D+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 102 FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKEMHVGHLRSTIIGDA 161

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY+ESKK +
Sbjct: 162 VVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEISMELSDLEAFYRESKKLY 221

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT     GES 
Sbjct: 222 DEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRENVMGESM 281

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+ KGL   DDG + ++    +++   PM ++  K DGGF Y T+D+A 
Sbjct: 282 YNDMLPLIVSDLKAKGLAVEDDGAQAVFLDEFQNKDGEPMGVIVQKRDGGFLYTTTDIAC 341

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
            + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H      
Sbjct: 342 AKYRYETLGADRVLYFIDSRQ--HQHLMQAWTIV-----RKAGYIPEQVSLEHHA----- 389

Query: 595 QFGMLIAHLQDKFPDYLTKSPPIADL 620
            FGM++      F      +  +ADL
Sbjct: 390 -FGMMLGKDGRPFKTRAGGTVRLADL 414



 Score =  216 bits (551), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 187/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+L+         S  ++DL+AFY
Sbjct: 155 STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKASGEISMELSDLEAFY 214

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +ESKK +DEDE F + A   VV LQ  DP   + W+ + DV+    Q+ YDRLNV+LT  
Sbjct: 215 RESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMIQNQRNYDRLNVSLTRE 274

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + K+ G    
Sbjct: 275 NVMGESMYNDMLPLIVSDLKAKGLAVEDDGAQAVFLDEFQNKDGEPMGVIVQKRDGGFLY 334

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P +  ++   FG++
Sbjct: 335 TTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGYI-PEQVSLEHHAFGMM 393

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTR+G TV+L++LLDE   R+   ++ KN   +L+  E ++    VA   +K
Sbjct: 394 LGKDGRPFKTRAGGTVRLADLLDEAEERAKALIESKN--PDLSADEKAKIANTVAMAAVK 451

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+   AG++
Sbjct: 452 YADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 498



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++ +L+  E ++    VA   +KYADLS +R  DYVF +D ML   GNTA Y+ YAYT
Sbjct: 427  ESKNPDLSADEKAKIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYT 486

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+   AG++  +L     +  + +  EKE AL   LL+  + +  V R+   H +C 
Sbjct: 487  RVASVFAKAGVDMNEL-----TGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCS 541

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  + E    +V   RL LA  TAK +K+   +L I T+ +M
Sbjct: 542  YLFELAGIFSSFYEACPILVAEQE----SVKQSRLKLAALTAKTIKQGLALLGIETLERM 597



 Score = 43.9 bits (102), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +  V+        +L  +  K E A PG
Sbjct: 55  QFGDYQANGIMGAAKQLG-----TNPREFAQKVLDVL--------NLEGIASKTEIAGPG 101

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FLS  +   Q +  + +            ++ D+S+PN+A++
Sbjct: 102 FINIFLSEEFLAAQAEAALADERLGVAQEAPKTIVADYSAPNVAKE 147


>gi|259908205|ref|YP_002648561.1| arginyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|387871047|ref|YP_005802420.1| protein argS [Erwinia pyrifoliae DSM 12163]
 gi|224963827|emb|CAX55329.1| Arginyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|283478133|emb|CAY74049.1| argS [Erwinia pyrifoliae DSM 12163]
          Length = 576

 Score =  229 bits (583), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 214/373 (57%), Gaps = 47/373 (12%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K         N     + +A  V  +L     L+ +  K+++A PG
Sbjct: 35  QFGDYQANGIMAVAK---------NLGMPPRQLAEKVLEQL----DLSGIAHKVDIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII------VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL+  +   QI  ++      ++ V+P T      V++D+S+PN+AKEMHVGH+RS
Sbjct: 82  FINIFLAPQWLSAQIDSVLTAPKLGISPVEPKT------VVIDYSAPNVAKEMHVGHVRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD  +R L +LGH V+R NHVGDWGTQFGMLIA L+ +  ++  ++  +ADL+AFY+
Sbjct: 136 TIIGDAAARTLAFLGHKVIRANHVGDWGTQFGMLIAFLEKQQNEH-QETLALADLEAFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-- 474
           E+K+ +DED  F +RA   VV LQ  D   +K W+ + D++    Q IYDR+NVTL    
Sbjct: 195 EAKRTYDEDPAFAERARGYVVKLQGGDEYCRKMWKQLVDITMTQNQLIYDRMNVTLARDD 254

Query: 475 -RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K DGG+ Y 
Sbjct: 255 VMGESLYNDMLPGIVADLKAKGLAVESEGATVVFLDEYKNKDGEPMGVIVQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E  KAD ++Y  D  Q  H  L++  TI+     R   Y+  ++   +H
Sbjct: 315 TTDIACAKYRYETLKADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYVPENIPLEHH 367

Query: 589 VGDWGTQFGMLIA 601
           +      FGM++ 
Sbjct: 368 M------FGMMLG 374



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 188/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R L +LGH V+R NHVGDWGTQFGMLIA L+ +  ++  ++  +ADL+AFY
Sbjct: 135 STIIGDAAARTLAFLGHKVIRANHVGDWGTQFGMLIAFLEKQQNEH-QETLALADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K+ +DED  F +RA   VV LQ  D   +K W+ + D++    Q IYDR+NVTL   
Sbjct: 194 REAKRTYDEDPAFAERARGYVVKLQGGDEYCRKMWKQLVDITMTQNQLIYDRMNVTLARD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVADLKAKGLAVESEGATVVFLDEYKNKDGEPMGVIVQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLKADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PENIPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T+KLS+LLDE + R+   + +KN   ++   EL      V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTIKLSDLLDEAIDRATRLVAEKN--PDMPAGELKALANIVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI++E
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIDAE 479



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 102/178 (57%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL      V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPAGELKALANIVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AGI++E     A S    +  ++E ALA  LL+ ++ +  V RD   H +C YL
Sbjct: 468  LSVFRKAGIDAE-----AVSGTTRIIEDREAALAVRLLQFDETITQVARDGMPHVMCAYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  + E   ++    RL LA  TAK +K+  D L I TV +M
Sbjct: 523  YDLAGLFSGFYEHCPILNAEDEATKQS----RLRLALLTAKTLKQGLDTLGIATVERM 576



 Score = 49.3 bits (116), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 25/112 (22%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K         N     + +A  V  +L     L+ +  K++ A PG
Sbjct: 35  QFGDYQANGIMAVAK---------NLGMPPRQLAEKVLEQL----DLSGIAHKVDIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII------VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL+  +   Q+  ++      ++ V+P T      V++D+S+PN+A++
Sbjct: 82  FINIFLAPQWLSAQIDSVLTAPKLGISPVEPKT------VVIDYSAPNVAKE 127


>gi|119468958|ref|ZP_01611983.1| arginyl-tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119447610|gb|EAW28877.1| arginyl-tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 580

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/357 (38%), Positives = 200/357 (56%), Gaps = 60/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD I R LE+ G  V+R NH+GDWGTQFGMLIAHL+D+    +  +S  
Sbjct: 133 HLR----STIIGDAIVRALEFRGDKVIRQNHMGDWGTQFGMLIAHLEDQISQGVDLESVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y R
Sbjct: 189 LADLETFYRDAKKRFDDEEGFADKARDYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKR 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSL------------------------- 708
           LNVTLT+     ES Y   +  ++  L+ K N+++                         
Sbjct: 249 LNVTLTQADIMAESAYNSELNDIISLLKDK-NIAVESQGAQVVFLDELANKDGEPSAFIV 307

Query: 709 --------------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                               + KLG   I+   D  Q +HF  +E  A+KAG+L  ++T 
Sbjct: 308 QKSGGGFLYATTDLAACDYRSNKLGAERILIFVDARQSLHFNQVELTARKAGLLR-DETS 366

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805
            +F  FG ++G D K FKTR+G TVKL++LL+E + R+  KL +  R ++L+  E SE  
Sbjct: 367 YEFCPFGTMMGADGKPFKTRTGGTVKLADLLEESISRAATKLAE--RESDLSDHERSEIA 424

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           + V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTR+ SI R +G+++
Sbjct: 425 RKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRVRSIFRKSGVDA 481



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 203/375 (54%), Gaps = 39/375 (10%)

Query: 205 MSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++R  L +    A+  A  PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRTILVEKAIAAMTAAGLPE--DTNPAVTQSTRP---QFGDYQINGAMGAAKKMK--- 52

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNV-----FLSR-VYAGEQI 317
              NP ++AQ I          N  +  + +K E+A PGF+N+     FL++ V A    
Sbjct: 53  --SNPRELAQKIID--------NLDVTDIAEKTEIAGPGFINIHLKPEFLAKSVEAANSD 102

Query: 318 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
             + VN    P       V+VD+SSPN+AKEMHVGHLRSTIIGD I R LE+ G  V+R 
Sbjct: 103 AKLAVNEHANPQ-----TVVVDYSSPNLAKEMHVGHLRSTIIGDAIVRALEFRGDKVIRQ 157

Query: 378 NHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 436
           NH+GDWGTQFGMLIAHL+D+    +  +S  +ADL+ FY+++KKRFD++E F  +A   V
Sbjct: 158 NHMGDWGTQFGMLIAHLEDQISQGVDLESVALADLETFYRDAKKRFDDEEGFADKARDYV 217

Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEK 493
           V LQ  D   +K W++    S +  +++Y RLNVTLT+     ES Y   +  ++  L+ 
Sbjct: 218 VKLQGGDAHCEKLWKLFIATSVKHSEEVYKRLNVTLTQADIMAESAYNSELNDIISLLKD 277

Query: 494 KGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIV 548
           K +     G ++++      +D       + KS GGF Y T+DLAA   R  +  A+ I+
Sbjct: 278 KNIAVESQGAQVVFLDELANKDGEPSAFIVQKSGGGFLYATTDLAACDYRSNKLGAERIL 337

Query: 549 YVTDLGQGVHFRLLE 563
              D  Q +HF  +E
Sbjct: 338 IFVDARQSLHFNQVE 352



 Score =  107 bits (267), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            + R+  KL +  R ++L+  E SE  + V  G +KYADLS +R  DY+F++D ML   G 
Sbjct: 401  ISRAATKLAE--RESDLSDHERSEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGA 458

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA YL YAYTR+ SI R +G+++  L     +  V++   +E ALA  LL++ +VL L+ 
Sbjct: 459  TAPYLQYAYTRVRSIFRKSGVDAASL-----NADVAIAEPQEKALALKLLQLEEVLDLMI 513

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             +   H LC YLY++++ +  FY+ C  ++   EG   +V   RL+L    A  +K   D
Sbjct: 514  SEATPHVLCGYLYELASLYMTFYEACPVLK---EGVEPSVRDSRLVLCNLVADTLKTGLD 570

Query: 1110 ILNIRTVHKM 1119
            +L I  + +M
Sbjct: 571  LLGIEVMEQM 580



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 32/172 (18%)

Query: 9   MSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++R  L +    A+  A  PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRTILVEKAIAAMTAAGLPE--DTNPAVTQSTRP---QFGDYQINGAMGAAKKMK--- 52

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNV-----FLSR-VYAGEQM 121
              NP ++AQ I          N  +  + +K E A PGF+N+     FL++ V A    
Sbjct: 53  --SNPRELAQKIID--------NLDVTDIAEKTEIAGPGFINIHLKPEFLAKSVEAANSD 102

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAI 173
             + VN    P       V+VD+SSPN+A++      HL S I    I +A+
Sbjct: 103 AKLAVNEHANPQ-----TVVVDYSSPNLAKE--MHVGHLRSTIIGDAIVRAL 147


>gi|392536834|ref|ZP_10283971.1| arginyl-tRNA ligase [Pseudoalteromonas marina mano4]
          Length = 580

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/357 (38%), Positives = 200/357 (56%), Gaps = 60/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD I R LE+ G  V+R NH+GDWGTQFGMLIAHL+D+    +  +S  
Sbjct: 133 HLR----STIIGDAIVRALEFRGDKVIRQNHMGDWGTQFGMLIAHLEDQISQGVDLESVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y R
Sbjct: 189 LADLETFYRDAKKRFDDEEGFADKARDYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKR 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSL------------------------- 708
           LNVTLT+     ES Y   +  ++  L+ K N+++                         
Sbjct: 249 LNVTLTQADIMAESAYNSELNDIISLLKDK-NIAVESQGAQVVFLDELANKDGEPSAFIV 307

Query: 709 --------------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                               + KLG   I+   D  Q +HF  +E  A+KAG+L  ++T 
Sbjct: 308 QKSGGGFLYATTDLAACDYRSNKLGAERILIFVDARQSLHFNQVELTARKAGLLR-DETS 366

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805
            +F  FG ++G D K FKTR+G TVKL++LL+E + R+  KL +  R ++L+  E SE  
Sbjct: 367 YEFCPFGTMMGADGKPFKTRTGGTVKLADLLEESISRAATKLAE--RESDLSDHERSEIA 424

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           + V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTR+ SI R +G+++
Sbjct: 425 RKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRVRSIFRKSGVDA 481



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/378 (36%), Positives = 202/378 (53%), Gaps = 45/378 (11%)

Query: 205 MSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++R  L +    A+  A  PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRTILVEKAIAAMTAAGLPE--DTNPAVTQSTRP---QFGDYQINGAMGAAKKMK--- 52

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
              NP ++AQ I          N  +  + +K E+A PGF+N+ L          + + N
Sbjct: 53  --SNPRELAQKIID--------NLDVTDIAEKTEIAGPGFINIHLK--------PEFLAN 94

Query: 324 GVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDV 374
            V+    + KL          V+VD+SSPN+AKEMHVGHLRSTIIGD I R LE+ G  V
Sbjct: 95  SVKAANSDAKLAVNEHANPQTVVVDYSSPNLAKEMHVGHLRSTIIGDAIVRALEFRGDKV 154

Query: 375 VRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAY 433
           +R NH+GDWGTQFGMLIAHL+D+    +  +S  +ADL+ FY+++KKRFD++E F  +A 
Sbjct: 155 IRQNHMGDWGTQFGMLIAHLEDQISQGVDLESVALADLETFYRDAKKRFDDEEGFADKAR 214

Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPY 490
             VV LQ  D   +K W++    S +  +++Y RLNVTLT+     ES Y   +  ++  
Sbjct: 215 DYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKRLNVTLTQADIMAESAYNSELNDIISL 274

Query: 491 LEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKAD 545
           L+ K +     G ++++      +D       + KS GGF Y T+DLAA   R  +  A+
Sbjct: 275 LKDKNIAVESQGAQVVFLDELANKDGEPSAFIVQKSGGGFLYATTDLAACDYRSNKLGAE 334

Query: 546 WIVYVTDLGQGVHFRLLE 563
            I+   D  Q +HF  +E
Sbjct: 335 RILIFVDARQSLHFNQVE 352



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            + R+  KL +  R ++L+  E SE  + V  G +KYADLS +R  DY+F++D ML   G 
Sbjct: 401  ISRAATKLAE--RESDLSDHERSEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGA 458

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA YL YAYTR+ SI R +G+++  L     +  V++   +E ALA  LL++ +VL L+ 
Sbjct: 459  TAPYLQYAYTRVRSIFRKSGVDAATL-----NADVAIAEPQEKALALKLLQLEEVLDLMI 513

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             +   H LC YLY++++ +  FY+ C  ++   EG   +V   RL+L    A  +K   D
Sbjct: 514  SEATPHVLCGYLYELASLYMTFYEACPVLK---EGVEPSVRDSRLVLCNLVADTLKTGLD 570

Query: 1110 ILNIRTVHKM 1119
            +L I  + +M
Sbjct: 571  LLGIEVMEQM 580



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 38/175 (21%)

Query: 9   MSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++R  L +    A+  A  PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRTILVEKAIAAMTAAGLPE--DTNPAVTQSTRP---QFGDYQINGAMGAAKKMK--- 52

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
              NP ++AQ I          N  +  + +K E A PGF+N+ L          + + N
Sbjct: 53  --SNPRELAQKIID--------NLDVTDIAEKTEIAGPGFINIHLK--------PEFLAN 94

Query: 128 GVQPPTLNKKL---------RVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAI 173
            V+    + KL          V+VD+SSPN+A++      HL S I    I +A+
Sbjct: 95  SVKAANSDAKLAVNEHANPQTVVVDYSSPNLAKE--MHVGHLRSTIIGDAIVRAL 147


>gi|241760366|ref|ZP_04758461.1| arginine--tRNA ligase [Neisseria flavescens SK114]
 gi|241319244|gb|EER55722.1| arginine--tRNA ligase [Neisseria flavescens SK114]
          Length = 572

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 150/369 (40%), Positives = 203/369 (55%), Gaps = 45/369 (12%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  EVA PGF
Sbjct: 35  FGDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LADNA----VIESAEVAGPGF 81

Query: 304 VNVFLSRVYAGEQIKDI-------IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           +N+ L   +  + I+         I    QP T      V++D+SSPN+AKEMHVGHLRS
Sbjct: 82  INLRLRPDFLAQNIQTALNDARFGIAKTAQPQT------VVIDYSSPNLAKEMHVGHLRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           +IIGD+ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+
Sbjct: 136 SIIGDSISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYR 193

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER- 475
            +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L    
Sbjct: 194 AAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPED 253

Query: 476 --GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYD 528
             GES Y   ++ +V  L +KGL   DDG K+++ ++     G     IV K  GGF Y 
Sbjct: 254 VAGESKYNDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYA 313

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           ++DLA +R RI   KAD ++YV D  Q +HF  L        T SR   YL  D  +   
Sbjct: 314 STDLACLRYRIGRLKADRLLYVVDHRQALHFEQLF-------TTSRKAGYLPED-AKAEF 365

Query: 589 VGDWGTQFG 597
           +G +GT  G
Sbjct: 366 IG-FGTMMG 373



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 190/345 (55%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L   
Sbjct: 193 RAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   ++ +V  L +KG                                     
Sbjct: 253 DVAGESKYNDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLY 312

Query: 705 ---NLS-LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +L+ L  ++G      ++YV D  Q +HF  L   ++KAG L P   + +F+GFG +
Sbjct: 313 ASTDLACLRYRIGRLKADRLLYVVDHRQALHFEQLFTTSRKAGYL-PEDAKAEFIGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL E + R+   +K+KN   EL   E ++  + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKN--PELGADEAAKIGKTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 430 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAG 474



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   E ++  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG    +        P  L    E  LA  LL+  DVL  V      H+L  
Sbjct: 465  RVQSVFRKAGEWDTN-------EPTVLTEPLEKQLAAELLKFEDVLQSVADTAYPHYLAA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY I+T FS FY+ C  ++  +EG  +     RL LA+ T   +K+   +L I  ++ M
Sbjct: 518  YLYQIATLFSRFYEACPILK--SEGATR---NSRLQLAKLTGDTLKQGLGLLGIDVLNVM 572



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 28/133 (21%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  E A PGF
Sbjct: 35  FGDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LADNA----VIESAEVAGPGF 81

Query: 108 VNVFLSRVYAGEQMKDI-------IVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           +N+ L   +  + ++         I    QP T      V++D+SSPN+A++      HL
Sbjct: 82  INLRLRPDFLAQNIQTALNDARFGIAKTAQPQT------VVIDYSSPNLAKE--MHVGHL 133

Query: 161 PSQIHDILISKAI 173
            S I    IS+ +
Sbjct: 134 RSSIIGDSISRVL 146


>gi|291617771|ref|YP_003520513.1| ArgS [Pantoea ananatis LMG 20103]
 gi|291152801|gb|ADD77385.1| ArgS [Pantoea ananatis LMG 20103]
          Length = 576

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 193/330 (58%), Gaps = 30/330 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAETVIQ--------HLDLTGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLN----KKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N+FL R +  E  +    N +Q P L     +   ++VD+S+PN+AKEMHVGH+RSTI
Sbjct: 82  FINIFLDRGWLAEHAR----NALQHPRLGVACVEPQTIVVDYSAPNVAKEMHVGHVRSTI 137

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD   R L +LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+E+
Sbjct: 138 IGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAFLEKQQNENHAEM-ALADLEGFYREA 196

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER--- 475
           K+ +DED  F +RA + VV LQ  D   ++ W+ + D++    Q IYDRLNVTLT +   
Sbjct: 197 KRTYDEDPEFAERARRYVVKLQGGDDYCRQMWKKLVDITMSQNQHIYDRLNVTLTRKDVM 256

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTS 530
           GES Y   +  +V  L+ KGL    +G  +++    +++   PM ++  K DGG+ Y T+
Sbjct: 257 GESLYNDMLPGIVADLKAKGLAVESEGATVVFLDEYQNKEGEPMGVIIQKKDGGYLYTTT 316

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           D+A  + R E   AD ++Y  D  Q  H +
Sbjct: 317 DIACAKYRYETLHADRVIYYIDSRQHQHLQ 346



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R L +LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAFLEKQQNENHAEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K+ +DED  F +RA + VV LQ  D   ++ W+ + D++    Q IYDRLNVTLT +
Sbjct: 194 REAKRTYDEDPEFAERARRYVVKLQGGDDYCRQMWKKLVDITMSQNQHIYDRLNVTLTRK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVADLKAKGLAVESEGATVVFLDEYQNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H +      +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVIYYIDSRQHQHLQQAWTIVRKAGYV-PESVPLEHHAFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T+KLS+LLDE   R+   + +KN   E++  E     + V    +K
Sbjct: 373 LGKDGRPFKTRSGGTIKLSDLLDEAYDRAYSLVSEKN--PEMSEEERRALAEVVGVSAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI ++
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIEAD 479



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   + +KN   E++  E     + V    +KYADLS +R  DY+F +D ML   GNTA
Sbjct: 400  RAYSLVSEKN--PEMSEEERRALAEVVGVSAVKYADLSKSRTTDYIFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ S+ R AGI ++ ++       ++L  ++E  LA  LL+  +V+  V RD
Sbjct: 458  PYMQYAYTRVLSVFRKAGIEADAIQ-----ADITLTDDREALLATRLLQFEEVITQVARD 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  + E   ++    RL +A  TAK +K   D L
Sbjct: 513  GTPHVMCAYLYDVAGLFSGFYEHCPILAAEDEATRQS----RLQIAALTAKTLKLGLDTL 568

Query: 1112 NIRTVHKM 1119
             I+TV +M
Sbjct: 569  GIKTVDRM 576



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 21/110 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAETVIQ--------HLDLTGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLN----KKLRVLVDFSSPNIARK 152
           F+N+FL R +  E  +    N +Q P L     +   ++VD+S+PN+A++
Sbjct: 82  FINIFLDRGWLAEHAR----NALQHPRLGVACVEPQTIVVDYSAPNVAKE 127


>gi|119943800|ref|YP_941480.1| arginyl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|166232827|sp|A1SQW6.1|SYR_PSYIN RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|119862404|gb|ABM01881.1| arginyl-tRNA synthetase [Psychromonas ingrahamii 37]
          Length = 582

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/350 (40%), Positives = 188/350 (53%), Gaps = 61/350 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI----ADL 620
           S+IIGD ++R LE+ G++VVR NHVGDWGTQFGML+A++++       K  PI    A+L
Sbjct: 140 SSIIGDAVARTLEFKGNNVVRQNHVGDWGTQFGMLLAYMEE----LRAKGEPIENNLANL 195

Query: 621 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT 680
           + FY+ +K RFDE E F  RA   VV LQ  + D  K W    + S    Q+ Y RL V+
Sbjct: 196 EIFYRAAKGRFDESEDFATRARHLVVKLQGGNKDCLKLWAKFNETSLSHCQETYQRLGVS 255

Query: 681 LTE---RGESFYQKHMEQLVPYLEKKGNLS------------------------LTKKLG 713
           LT    RGES Y   +  +V  L+K+G L                         + KK G
Sbjct: 256 LTRADVRGESSYNDQLAVVVEDLDKQGLLQQSQGAKCVFLDNFKNKEGDPLPVIIQKKDG 315

Query: 714 -----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVG 750
                                  I+Y  D  QG+HF+ + E A+ AG +N  KT ++ + 
Sbjct: 316 GFLYATSDLAAMRYRQNELNADRILYFVDARQGLHFQQVFEVARSAGFVN-EKTSLEHMP 374

Query: 751 FGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAY 810
           FG V+GED + FKTRSG   KL++LL E   R+ + +K+KN+  E++  EL      V  
Sbjct: 375 FGTVMGEDGRPFKTRSGAVAKLADLLTEAEVRAYELVKEKNK--EMSEPELRHIASVVGI 432

Query: 811 GCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
             +KYADLS NR  DY FSFD ML   GNTA YLLYAYTR+ SI   AGI
Sbjct: 433 SSVKYADLSKNRTSDYTFSFDSMLSFEGNTAPYLLYAYTRVVSIFNKAGI 482



 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 153/403 (37%), Positives = 224/403 (55%), Gaps = 54/403 (13%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD+  N A+ L K       K+NP  +A+ I       +A  P    VI K+E+A PGF+
Sbjct: 41  GDYANNLALMLAK-----PAKQNPRHLAELI-------IANIPESTLVI-KMEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLR-----VLVDFSSPNIAKEMHVGHLRSTII 359
           N F++  +  +QI    ++      LN ++      +++D+SSPN+AKEMHVGHLRS+II
Sbjct: 88  NFFINPNFLEKQIDGAYLD----KRLNVQIEANPQTIVIDYSSPNLAKEMHVGHLRSSII 143

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI----ADLQAFY 415
           GD ++R LE+ G++VVR NHVGDWGTQFGML+A+++    +   K  PI    A+L+ FY
Sbjct: 144 GDAVARTLEFKGNNVVRQNHVGDWGTQFGMLLAYME----ELRAKGEPIENNLANLEIFY 199

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           + +K RFDE E F  RA   VV LQ  + D  K W    + S    Q+ Y RL V+LT  
Sbjct: 200 RAAKGRFDESEDFATRARHLVVKLQGGNKDCLKLWAKFNETSLSHCQETYQRLGVSLTRA 259

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
             RGES Y   +  +V  L+K+GLL+   G K ++      ++   +P+ I K DGGF Y
Sbjct: 260 DVRGESSYNDQLAVVVEDLDKQGLLQQSQGAKCVFLDNFKNKEGDPLPVIIQKKDGGFLY 319

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            TSDLAA+R R  E  AD I+Y  D  QG+HF+ + E       ++R   ++ ++   L 
Sbjct: 320 ATSDLAAMRYRQNELNADRILYFVDARQGLHFQQVFE-------VARSAGFV-NEKTSLE 371

Query: 588 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           H+  +GT  G      +D  P + T+S  +A L     E++ R
Sbjct: 372 HM-PFGTVMG------EDGRP-FKTRSGAVAKLADLLTEAEVR 406



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/188 (40%), Positives = 106/188 (56%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+ + +K+KN+  E++  EL      V    +KYADLS NR  DY FSFD ML   GNTA
Sbjct: 406  RAYELVKEKNK--EMSEPELRHIASVVGISSVKYADLSKNRTSDYTFSFDSMLSFEGNTA 463

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+ SI   AGI      + + +  VSL  EKE  LA  L++ ND++  V + 
Sbjct: 464  PYLLYAYTRVVSIFNKAGI-----EMGSVTAAVSLTQEKEIDLANKLIQFNDIIDQVAKQ 518

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YL++++  FS FY+ C  +  + E    T    RL LA  TAK +K+   +L
Sbjct: 519  GMPHFLCSYLFELAGLFSSFYEACPILIAETE----TQKQSRLKLAGLTAKTLKQGLSLL 574

Query: 1112 NIRTVHKM 1119
             I T+ +M
Sbjct: 575  GINTLERM 582


>gi|336451068|ref|ZP_08621514.1| arginyl-tRNA synthetase [Idiomarina sp. A28L]
 gi|336282324|gb|EGN75562.1| arginyl-tRNA synthetase [Idiomarina sp. A28L]
          Length = 582

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 150/400 (37%), Positives = 216/400 (54%), Gaps = 42/400 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N A+ L K       K+NP        ++  + +A  P  A VI K E+A PGF+
Sbjct: 41  GDFATNLALMLAK-----PAKQNP-------RALAEAIIAAIPENA-VIGKTEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N  + R     Q++    +   GV  P   K   V++D+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFTVDRSQLIAQLETAFADKRCGV--PLAEKPQTVVIDYSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R L   GH V+  NHVGDWGTQFGML+AH++D   +  +    ++DL+ FYK +KKR
Sbjct: 146 AVARTLSLQGHKVIPQNHVGDWGTQFGMLLAHMEDSLQEASSDELALSDLETFYKAAKKR 205

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FD++E F  RA   VV LQ  D   K  W+   D S    Q++YDRL V LT      ES
Sbjct: 206 FDDEEGFADRARALVVKLQSGDAYCKSLWQKFIDTSLAHCQEVYDRLGVQLTRADVMAES 265

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + ++V  L ++GLL  + G + ++     G++   +P+ + K DGG+ Y T+DLA
Sbjct: 266 AYNDDLAKVVVDLREQGLLVENQGAQCVFLDEFKGKEDEPLPIIVQKKDGGYLYATTDLA 325

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
           A+R R     AD ++YV D  Q +HF+ +        T+ R   Y   +   L H+G   
Sbjct: 326 AVRYRAGTLGADRVIYVVDARQSLHFQQIF-------TLCRKAGY-ASESTSLEHLG--- 374

Query: 594 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 633
             FGM++   +D  P Y ++   +  L     ES++R  E
Sbjct: 375 --FGMVLG--KDGRP-YKSRDGGVTKLADLLDESERRAAE 409



 Score =  218 bits (556), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/346 (37%), Positives = 184/346 (53%), Gaps = 53/346 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R L   GH V+  NHVGDWGTQFGML+AH++D   +  +    ++DL+ FY
Sbjct: 140 STIIGDAVARTLSLQGHKVIPQNHVGDWGTQFGMLLAHMEDSLQEASSDELALSDLETFY 199

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           K +KKRFD++E F  RA   VV LQ  D   K  W+   D S    Q++YDRL V LT  
Sbjct: 200 KAAKKRFDDEEGFADRARALVVKLQSGDAYCKSLWQKFIDTSLAHCQEVYDRLGVQLTRA 259

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS------------------------LTKKLG---- 713
               ES Y   + ++V  L ++G L                         + KK G    
Sbjct: 260 DVMAESAYNDDLAKVVVDLREQGLLVENQGAQCVFLDEFKGKEDEPLPIIVQKKDGGYLY 319

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++YV D  Q +HF+ +    +KAG  + + T ++ +GFG+V
Sbjct: 320 ATTDLAAVRYRAGTLGADRVIYVVDARQSLHFQQIFTLCRKAGYASES-TSLEHLGFGMV 378

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + +K+R G   KL++LLDE  RR+ + +  K   T+ +  E +   + V    +K
Sbjct: 379 LGKDGRPYKSRDGGVTKLADLLDESERRAAELIAAKG--TDFSAEEQANVARVVGISSVK 436

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           YADLS NR  DYVF +D ML   GNTA YLLYAYTR+ SI + AG+
Sbjct: 437 YADLSKNRTSDYVFDWDTMLSFEGNTAPYLLYAYTRVNSIFQKAGL 482



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 104/189 (55%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            RR+ + +  K   T+ +  E +   + V    +KYADLS NR  DYVF +D ML   GNT
Sbjct: 405  RRAAELIAAKG--TDFSAEEQANVARVVGISSVKYADLSKNRTSDYVFDWDTMLSFEGNT 462

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYAYTR+ SI + AG+   ++     S  + L  E++  LA  L +  +++  V  
Sbjct: 463  APYLLYAYTRVNSIFQKAGLALHEV-----SGAIQLPTEQDETLANKLAQFPEIIASVGN 517

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H LC Y+++++ AFS FY+ C  +  D E    T+   RL LA  TA+++ +  ++
Sbjct: 518  KGMPHFLCGYMFELAGAFSSFYEACPILNADDE----TIKQSRLKLAGLTARILAQGLEL 573

Query: 1111 LNIRTVHKM 1119
            L I T+ +M
Sbjct: 574  LGIDTLERM 582



 Score = 40.0 bits (92), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 24/136 (17%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N A+ L K       K+NP        ++  + +A  P  A VI K E A PGF+
Sbjct: 41  GDFATNLALMLAK-----PAKQNP-------RALAEAIIAAIPENA-VIGKTEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIH 165
           N  + R     Q++    +   GV  P   K   V++D+SSPN+A++      HL S I 
Sbjct: 88  NFTVDRSQLIAQLETAFADKRCGV--PLAEKPQTVVIDYSSPNLAKE--MHVGHLRSTI- 142

Query: 166 DILISKAIAEEEKKQG 181
              I  A+A     QG
Sbjct: 143 ---IGDAVARTLSLQG 155


>gi|213647449|ref|ZP_03377502.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213857447|ref|ZP_03384418.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289824037|ref|ZP_06543635.1| arginyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 516

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 200/349 (57%), Gaps = 28/349 (8%)

Query: 283 LATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVD 339
           + T+  L+ +  K+E+A PGF+N+FL   +  EQ++  + +   GV  PT   +  ++VD
Sbjct: 1   MLTHLDLSGIASKVEIAGPGFINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVD 57

Query: 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFP 399
           +S+PN+AKEMHVGHLRSTIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  
Sbjct: 58  YSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQ 117

Query: 400 DYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRR 459
           +       +ADL+ FY+++KK +DEDE F +RA   VV LQ  D  +++ W  + D++  
Sbjct: 118 EN-AGDMALADLEGFYRDAKKHYDEDETFAERARNYVVKLQSGDTYFREMWRKLVDITMT 176

Query: 460 DFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGS 513
             Q  YDRLNVTLT     GES Y   +  +V  L+ KGL    +G  +++ +   ++  
Sbjct: 177 QNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEG 236

Query: 514 IPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDT 571
            PM ++  K DGG+ Y T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+   
Sbjct: 237 DPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV--- 291

Query: 572 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
             R   Y+  D V L H       FGM++      F      +  +ADL
Sbjct: 292 --RKAGYV-PDSVPLEH-----HMFGMMLGKDGKPFKTRTGGTVKLADL 332



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/349 (38%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY
Sbjct: 74  STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFY 132

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 133 RDAKKHYDEDETFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRD 192

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 193 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLY 252

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 253 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 311

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 312 LGKDGKPFKTRTGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 369

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ +
Sbjct: 370 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKADIDEQ 418



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 336  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 393

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ +    A  S PV +  ++E  LA  LL+  + L +V
Sbjct: 394  NTAPYMQYAYTRVLSVFRKADIDEQ----ALASAPVIISEDREAQLAARLLQFEETLTVV 449

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCI--EKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
             R+   H +C YLYD++  FS FY++C  +  E DA      V   RL LA+ TAK +K 
Sbjct: 450  AREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDA------VRNSRLKLAQLTAKTLKL 503

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 504  GLDTLGIETVERM 516



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 87  LATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVD 143
           + T+  L+ +  K+E A PGF+N+FL   +  EQ++  + +   GV  PT   +  ++VD
Sbjct: 1   MLTHLDLSGIASKVEIAGPGFINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVD 57

Query: 144 FSSPNIARK 152
           +S+PN+A++
Sbjct: 58  YSAPNVAKE 66


>gi|77359609|ref|YP_339184.1| arginyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|109895020|sp|Q3IHI4.1|SYR_PSEHT RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|76874520|emb|CAI85741.1| arginyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 580

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/357 (38%), Positives = 198/357 (55%), Gaps = 60/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD I R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   +  
Sbjct: 133 HLR----STIIGDAIVRALEFRGDSVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDTVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y R
Sbjct: 189 LADLETFYRDAKKRFDDEEGFADKARNYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKR 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSL------------------------- 708
           LNVTLT+     ES Y   +  ++  L+ K N+++                         
Sbjct: 249 LNVTLTQADIMAESAYNAELNDIISLLKDK-NIAVESQGAQVVFLDELANKDGEPSAFIV 307

Query: 709 --------------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                               + KLG   I+   D  Q +HF  +E  A+KAG L  ++T 
Sbjct: 308 QKSGGGFLYATTDLAACDYRSNKLGADRILIFVDARQSLHFNQVELTARKAGFLR-DETS 366

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805
            +F  FG ++G D K FKTR+G TVKL++LL+E + R+  KL +  R ++L+  E SE  
Sbjct: 367 YEFCPFGTMMGADNKPFKTRTGGTVKLADLLEESINRAAIKLAE--RESDLSEQERSEIA 424

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           + V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTRI SI R +G+++
Sbjct: 425 RKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRIRSIFRKSGVDA 481



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/336 (38%), Positives = 188/336 (55%), Gaps = 33/336 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K  K      NP ++AQ I          N  ++ + +K E+A PG
Sbjct: 35  QFGDYQINAAMGAAKKMK-----SNPRELAQKIID--------NLDVSDIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIK------DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+ L   +  + +K       + VN    P      +V+VD+SSPN+AKEMHVGHLRS
Sbjct: 82  FINIHLKPEFLAQSVKAANSDAKLAVNEHANPQ-----KVVVDYSSPNLAKEMHVGHLRS 136

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFY 415
           TIIGD I R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   +  +ADL+ FY
Sbjct: 137 TIIGDAIVRALEFRGDSVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDTVALADLETFY 196

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           +++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y RLNVTLT+ 
Sbjct: 197 RDAKKRFDDEEGFADKARNYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKRLNVTLTQA 256

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
               ES Y   +  ++  L+ K +     G ++++      +D       + KS GGF Y
Sbjct: 257 DIMAESAYNAELNDIISLLKDKNIAVESQGAQVVFLDELANKDGEPSAFIVQKSGGGFLY 316

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
            T+DLAA   R  +  AD I+   D  Q +HF  +E
Sbjct: 317 ATTDLAACDYRSNKLGADRILIFVDARQSLHFNQVE 352



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 111/192 (57%), Gaps = 10/192 (5%)

Query: 930  LRRSLDK--LKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDR 987
            L  S+++  +K   R ++L+  E SE  + V  G +KYADLS +R  DY+F++D ML   
Sbjct: 397  LEESINRAAIKLAERESDLSEQERSEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFE 456

Query: 988  GNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLML 1047
            G TA YL YAYTRI SI R +G+++  L     ++ V++   +E ALA  LL++ +VL L
Sbjct: 457  GATAPYLQYAYTRIRSIFRKSGVDAATL-----NSNVTIVEPQEKALALKLLQLEEVLDL 511

Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
            +  +   H LC YLY++++ +  FY+ C  ++   EG    V   RL+L    +K ++  
Sbjct: 512  MITEATPHVLCGYLYELASLYMTFYEACPVLK---EGVEPNVRDSRLVLCNLVSKTLETG 568

Query: 1108 FDILNIRTVHKM 1119
             D+L I  + +M
Sbjct: 569  LDLLGIEVMEQM 580



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 26/133 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K  K      NP ++AQ I          N  ++ + +K E A PG
Sbjct: 35  QFGDYQINAAMGAAKKMK-----SNPRELAQKIID--------NLDVSDIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMK------DIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+ L   +  + +K       + VN    P      +V+VD+SSPN+A++      HL
Sbjct: 82  FINIHLKPEFLAQSVKAANSDAKLAVNEHANPQ-----KVVVDYSSPNLAKE--MHVGHL 134

Query: 161 PSQIHDILISKAI 173
            S I    I +A+
Sbjct: 135 RSTIIGDAIVRAL 147


>gi|378766910|ref|YP_005195374.1| arginyl-tRNA synthetase ArgS [Pantoea ananatis LMG 5342]
 gi|386079088|ref|YP_005992613.1| arginyl-tRNA synthetase ArgS [Pantoea ananatis PA13]
 gi|354988269|gb|AER32393.1| arginyl-tRNA synthetase ArgS [Pantoea ananatis PA13]
 gi|365186387|emb|CCF09337.1| arginyl-tRNA synthetase ArgS [Pantoea ananatis LMG 5342]
          Length = 576

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 193/330 (58%), Gaps = 30/330 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAETVIQ--------HLDLTGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLN----KKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N+FL R +  E  +    N +Q P L     +   ++VD+S+PN+AKEMHVGH+RSTI
Sbjct: 82  FINIFLDRGWLAEHAR----NALQHPRLGVARVEPQTIVVDYSAPNVAKEMHVGHVRSTI 137

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD   R L +LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+E+
Sbjct: 138 IGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAFLEKQQNENHAEM-ALADLEGFYREA 196

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER--- 475
           K+ +DED  F +RA + VV LQ  D   ++ W+ + D++    Q IYDRLNVTLT +   
Sbjct: 197 KRTYDEDPEFAERARRYVVKLQGGDDYCRQMWKKLVDITMSQNQHIYDRLNVTLTRKDVM 256

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTS 530
           GES Y   +  +V  L+ KGL    +G  +++    +++   PM ++  K DGG+ Y T+
Sbjct: 257 GESLYNDMLPGIVADLKAKGLAVESEGATVVFLDEYQNKEGEPMGVIIQKKDGGYLYTTT 316

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           D+A  + R E   AD ++Y  D  Q  H +
Sbjct: 317 DIACAKYRYETLHADRVIYYIDSRQHQHLQ 346



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R L +LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAFLEKQQNENHAEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K+ +DED  F +RA + VV LQ  D   ++ W+ + D++    Q IYDRLNVTLT +
Sbjct: 194 REAKRTYDEDPEFAERARRYVVKLQGGDDYCRQMWKKLVDITMSQNQHIYDRLNVTLTRK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVADLKAKGLAVESEGATVVFLDEYQNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H +      +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVIYYIDSRQHQHLQQAWTIVRKAGYV-PESVPLEHHAFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T+KLS+LLDE   R+   + +KN   E++  E     + V    +K
Sbjct: 373 LGKDGRPFKTRSGGTIKLSDLLDEAYDRAYSLVSEKN--PEMSEEERRALAEVVGVSAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI ++
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIEAD 479



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   + +KN   E++  E     + V    +KYADLS +R  DY+F +D ML   GNTA
Sbjct: 400  RAYSLVSEKN--PEMSEEERRALAEVVGVSAVKYADLSKSRTTDYIFDWDNMLAFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ S+ R AGI ++ ++       ++L  ++E  LA  LL+  +V+  V RD
Sbjct: 458  PYMQYAYTRVLSVFRKAGIEADAIQ-----ADITLTDDREALLATRLLQFEEVITQVARD 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  + E   ++    RL +A  TAK +K   D L
Sbjct: 513  GTPHVMCAYLYDVAGLFSGFYEHCPILAAEDEATRQS----RLQIAALTAKTLKLGLDTL 568

Query: 1112 NIRTVHKM 1119
             I+TV +M
Sbjct: 569  GIKTVDRM 576



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 21/110 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAETVIQ--------HLDLTGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLN----KKLRVLVDFSSPNIARK 152
           F+N+FL R +  E  +    N +Q P L     +   ++VD+S+PN+A++
Sbjct: 82  FINIFLDRGWLAEHAR----NALQHPRLGVARVEPQTIVVDYSAPNVAKE 127


>gi|417231824|ref|ZP_12033222.1| arginine--tRNA ligase [Escherichia coli 5.0959]
 gi|386204823|gb|EII09334.1| arginine--tRNA ligase [Escherichia coli 5.0959]
          Length = 577

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/389 (36%), Positives = 208/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  + ++  + +        +K  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLDVATPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H+  
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHHM-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 369 ----FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+ E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEIDEE 479



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+ E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEIDEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +        +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLDVATPEKQTIVVDYSAPNVAKE 127


>gi|451927126|gb|AGF85004.1| synthetase [Moumouvirus goulette]
          Length = 577

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/317 (41%), Positives = 195/317 (61%), Gaps = 15/317 (4%)

Query: 275 IASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK----DIIVNGVQPPTL 330
           +A  + +EL+ N  +  ++  I + +  F+ + +S  Y   +I     D++ N   P  +
Sbjct: 58  VADKLLAELSNNK-IFDLVQIINIKQNIFLVLNISNEYISRRINIIYDDLLHNSSLPNPI 116

Query: 331 NKKL--RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388
              L  ++L+DFSSPNIAKEMH+GHLRSTIIG+++ R+ E+ G +V R+NH+GDWGTQFG
Sbjct: 117 INSLPPKILIDFSSPNIAKEMHIGHLRSTIIGESLCRIYEFCGCEVQRVNHIGDWGTQFG 176

Query: 389 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
           MLIA+++     Y  K   +++L   YKES+K FDED  F K + Q  V LQ+ D +   
Sbjct: 177 MLIAYIK----KYDKKIGTLSELMNMYKESRKLFDEDNEFHKNSLQETVKLQKGDEENIC 232

Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWG 508
            W+ I ++S   F +IY  L+     +GESFYQ  M  L+  L+  G + ++D R  +  
Sbjct: 233 IWKEIREISLTSFNEIYKELDTYSEIKGESFYQSRMNDLIKELD--GFI-VEDNRMKIIR 289

Query: 509 EDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTI- 567
            D    P+ +VKSDGGFTYDTSDLAA++ R+ EEKAD I+YV D GQ +HF ++ E+ I 
Sbjct: 290 LDNYECPLILVKSDGGFTYDTSDLAALKYRLFEEKADQILYVVDSGQSLHFNMIFETAIK 349

Query: 568 IGDTISRLLEYLGHDVV 584
            G   S  ++++G  V+
Sbjct: 350 FGWCSSSQVKHIGFGVI 366



 Score =  196 bits (498), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 197/385 (51%), Gaps = 59/385 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIG+++ R+ E+ G +V R+NH+GDWGTQFGMLIA+++     Y  K   +++L   Y
Sbjct: 144 STIIGESLCRIYEFCGCEVQRVNHIGDWGTQFGMLIAYIKK----YDKKIGTLSELMNMY 199

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           KES+K FDED  F K + Q  V LQ+ D +    W+ I ++S   F +IY  L+     +
Sbjct: 200 KESRKLFDEDNEFHKNSLQETVKLQKGDEENICIWKEIREISLTSFNEIYKELDTYSEIK 259

Query: 685 GESFYQKHMEQLVPYLEK----------------KGNLSLTKKLG--------------- 713
           GESFYQ  M  L+  L+                 +  L L K  G               
Sbjct: 260 GESFYQSRMNDLIKELDGFIVEDNRMKIIRLDNYECPLILVKSDGGFTYDTSDLAALKYR 319

Query: 714 --------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTR 765
                   I+YV D GQ +HF ++ E A K G  + ++ +   +GFGV+LGED ++ KTR
Sbjct: 320 LFEEKADQILYVVDSGQSLHFNMIFETAIKFGWCSSSQVK--HIGFGVILGEDGRRLKTR 377

Query: 766 SGDTVKLSELLDEGL--RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
           SG T+KL ++L++     +++     +N +  ++P  +      +A   IKY+DL++ R 
Sbjct: 378 SGKTIKLLDVLNDVKLHAKTITSQYCENTNRTMSPDMIETISNKIAVNSIKYSDLNNPRE 437

Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPD--PSQSEVEDRCCP 881
            +Y F   KML+ +GNTAVYL+YA      +AR  GI  + P   D    Q  ++D    
Sbjct: 438 NNYKFDIKKMLNTKGNTAVYLMYA------LARCQGILRKTPNLQDILNGQIVIDDL--- 488

Query: 882 SHAKTHRKPPFTYTELIEQALKENG 906
              +        Y E+IE  +KEN 
Sbjct: 489 -EIRNLSMKILKYPEVIESTIKENA 512



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 6/180 (3%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            +N +  ++P  +      +A   IKY+DL++ R  +Y F   KML+ +GNTAVYL+YA  
Sbjct: 404  ENTNRTMSPDMIETISNKIAVNSIKYSDLNNPRENNYKFDIKKMLNTKGNTAVYLMYALA 463

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R   I R    N +D+ +  Q     LE      L+  +L+  +V+    ++   HH+C 
Sbjct: 464  RCQGILRKTP-NLQDI-LNGQIVIDDLEIRN---LSMKILKYPEVIESTIKENAPHHICN 518

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++  + ++FY+   C+E   +  IK V+  R+ L      V+KK FD++ +  V ++
Sbjct: 519  YLYELVVSMTKFYNENRCMEIKNDQIIK-VYEYRIRLINLVVIVIKKMFDLIGLEHVEQI 577


>gi|398796723|ref|ZP_10556210.1| arginyl-tRNA synthetase [Pantoea sp. YR343]
 gi|398202725|gb|EJM89564.1| arginyl-tRNA synthetase [Pantoea sp. YR343]
          Length = 576

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/335 (39%), Positives = 188/335 (56%), Gaps = 40/335 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K        + P  +A+ +          +  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----QAPRQLAEQVIQ--------HLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDII------VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL R +   Q    +      V+ V P T      ++VD+S+PN+AK+MHVGH+RS
Sbjct: 82  FINIFLDRAWLAAQTAQALQLPRLGVSSVAPQT------IVVDYSAPNVAKQMHVGHVRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  ++  +   +ADL+AFY+
Sbjct: 136 TIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQNEH-HEEIALADLEAFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER- 475
           E+K  +D DE F +RA   VV LQ  D   +  W+ + D++    Q +YDRLNVTLT   
Sbjct: 195 EAKVTYDADEAFAERARNYVVKLQGGDEYCRSMWKKLVDITMSQNQLVYDRLNVTLTRND 254

Query: 476 --GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGF 525
             GES Y   +  +V  L +KGL    +G  +++        GE  G I   I K DGG+
Sbjct: 255 VMGESLYNDMLPGIVADLREKGLAVTSEGATVVFLDEFKNKEGEPMGVI---IQKKDGGY 311

Query: 526 TYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
            Y T+D+A  + R E   AD ++Y  D  Q  H +
Sbjct: 312 LYTTTDIACAKYRFETLHADRVLYYIDSRQHQHLQ 346



 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 133/349 (38%), Positives = 191/349 (54%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  ++  +   +ADL+AFY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQNEH-HEEIALADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K  +D DE F +RA   VV LQ  D   +  W+ + D++    Q +YDRLNVTLT  
Sbjct: 194 REAKVTYDADEAFAERARNYVVKLQGGDEYCRSMWKKLVDITMSQNQLVYDRLNVTLTRN 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L +KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVADLREKGLAVTSEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H +      +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRFETLHADRVLYYIDSRQHQHLQQAWTIVRKAGYV-PESVPLEHHAFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T++L++LLDE + R+   + +KN   E++  EL +  + V  G +K
Sbjct: 373 LGKDGRPFKTRSGGTIRLADLLDEAVERAHTLVSEKN--PEMSAQELKDLSEVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI+++
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIDAD 479



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ E++  EL +  + V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPEMSAQELKDLSEVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AGI+++ L     S  + L  E+E  LA  LL+  +V+  V RD   H +C YL
Sbjct: 468  LSVFRKAGIDADSL-----SGDIVLTEEREAQLATRLLQFEEVITQVARDGTPHVMCAYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  + E     +   RL LA  TAK +K+  D L I+TV +M
Sbjct: 523  YDLAGQFSGFYEHCPILSAEDE----NIRQSRLQLAALTAKTLKQGLDTLGIKTVERM 576



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 25/112 (22%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K        + P  +A+ +          +  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----QAPRQLAEQVIQ--------HLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDII------VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL R +   Q    +      V+ V P T      ++VD+S+PN+A++
Sbjct: 82  FINIFLDRAWLAAQTAQALQLPRLGVSSVAPQT------IVVDYSAPNVAKQ 127


>gi|90416671|ref|ZP_01224601.1| arginyl-tRNA synthetase [gamma proteobacterium HTCC2207]
 gi|90331424|gb|EAS46660.1| arginyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 579

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 215/402 (53%), Gaps = 35/402 (8%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M +++ L+  F+ A+Q A   +  + + + + + K   +FGD+Q N AMA  K  K    
Sbjct: 1   MRIKEILNQRFSAAMQAA--GVPSECSPILALSGK--PQFGDYQANGAMAAAKRLK---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI-KDIIVN 323
             NP D+A+ I  +          L  + D++E+A PGF+N+ L   +    +  + +  
Sbjct: 53  -MNPRDLAEKIIQLA--------DLDGIADRLEIAGPGFINIHLCDAFLTASLGTNTLYT 103

Query: 324 GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
             +      + RV+VD+SSPN+AKEMHVGHLRSTIIGD ++R+LEY GH V+R NH+GDW
Sbjct: 104 QSESDLDGTQKRVVVDYSSPNLAKEMHVGHLRSTIIGDAVARVLEYQGHTVLRQNHMGDW 163

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGMLIA L+ +  +       + DL+ FY++SKK FD D  F   A   VV LQ  D
Sbjct: 164 GTQFGMLIAELEQQLSEGEQAELALGDLELFYQQSKKHFDADLEFADTARAYVVKLQSGD 223

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVPYLEKKGLLELD 500
              +  W+    VS     +IY +LNV LT      ES Y   ++ ++  L  K L    
Sbjct: 224 AHCRGLWQKFIQVSVAHNLEIYAQLNVGLTAEHIMPESAYNDDLQNVLDDLLAKDLALES 283

Query: 501 DGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
           DG K+++      ++    PM + KS GGF Y TSDLAA+R R+ + +AD I+Y  D  Q
Sbjct: 284 DGAKVVFLDELADKNGNPSPMIVQKSGGGFLYATSDLAAMRYRVGQLQADRILYFIDARQ 343

Query: 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            +H + +  +    D +S        D V L H   +GT  G
Sbjct: 344 SLHMKQVFAAARKADYVS--------DAVSLEH-HPFGTMMG 376



 Score =  208 bits (529), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/389 (36%), Positives = 201/389 (51%), Gaps = 59/389 (15%)

Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVV 584
           +T   SDL   ++R+  + +       +L + +H   L  STIIGD ++R+LEY GH V+
Sbjct: 102 YTQSESDLDGTQKRVVVDYSS-----PNLAKEMHVGHLR-STIIGDAVARVLEYQGHTVL 155

Query: 585 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQC 644
           R NH+GDWGTQFGMLIA L+ +  +       + DL+ FY++SKK FD D  F   A   
Sbjct: 156 RQNHMGDWGTQFGMLIAELEQQLSEGEQAELALGDLELFYQQSKKHFDADLEFADTARAY 215

Query: 645 VVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVPYL- 700
           VV LQ  D   +  W+    VS     +IY +LNV LT      ES Y   ++ ++  L 
Sbjct: 216 VVKLQSGDAHCRGLWQKFIQVSVAHNLEIYAQLNVGLTAEHIMPESAYNDDLQNVLDDLL 275

Query: 701 --------------------EKKGNLS--LTKKLG------------------------I 714
                               +K GN S  + +K G                        I
Sbjct: 276 AKDLALESDGAKVVFLDELADKNGNPSPMIVQKSGGGFLYATSDLAAMRYRVGQLQADRI 335

Query: 715 VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 774
           +Y  D  Q +H + +   A+KA  ++ +   ++   FG ++G+D + FKTRSG TVKL++
Sbjct: 336 LYFIDARQSLHMKQVFAAARKADYVS-DAVSLEHHPFGTMMGKDGRPFKTRSGGTVKLAD 394

Query: 775 LLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 834
           LL E + R+   L+ KN  T+L   E+S   ++V  G IKYADLS  R  DY+F +D ML
Sbjct: 395 LLVEAVERAEQLLRSKN--TDLGEDEISNIARSVGIGAIKYADLSKTRTNDYIFDWDAML 452

Query: 835 DDRGNTAVYLLYAYTRIASIARTAGINSE 863
              GNTA YL YAYTRI SI R AGI++E
Sbjct: 453 SFEGNTAPYLQYAYTRIRSIFRKAGISAE 481



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 107/180 (59%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++++T+L   E+S   ++V  G IKYADLS  R  DY+F +D ML   GNTA YL YAYT
Sbjct: 408  RSKNTDLGEDEISNIARSVGIGAIKYADLSKTRTNDYIFDWDAMLSFEGNTAPYLQYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI R AGI++E       S  +S+   +E AL   LL+ ++V+  V  +   H LC 
Sbjct: 468  RIRSIFRKAGISAESF-----SAEISITEHQEKALIMKLLQFDNVVDQVAAEGYPHILCN 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+Y++++A+  FY++C  ++ +   +++     RL L + T++ + K  D+L I  + KM
Sbjct: 523  YVYELASAYMTFYEHCPVLKDEVPEELQ---KSRLQLCKLTSETIAKGLDLLGIEVMEKM 579



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 24/174 (13%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M +++ L+  F+ A+Q A   +  + + + + + K   +FGD+Q N AMA  K  K    
Sbjct: 1   MRIKEILNQRFSAAMQAA--GVPSECSPILALSGK--PQFGDYQANGAMAAAKRLK---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM-KDIIVN 127
             NP D+A+ I  +          L  + D++E A PGF+N+ L   +    +  + +  
Sbjct: 53  -MNPRDLAEKIIQLA--------DLDGIADRLEIAGPGFINIHLCDAFLTASLGTNTLYT 103

Query: 128 GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQG 181
             +      + RV+VD+SSPN+A++      HL S I    I  A+A   + QG
Sbjct: 104 QSESDLDGTQKRVVVDYSSPNLAKE--MHVGHLRSTI----IGDAVARVLEYQG 151


>gi|386016122|ref|YP_005934407.1| arginyl-tRNA synthetase ArgS [Pantoea ananatis AJ13355]
 gi|327394189|dbj|BAK11611.1| arginyl-tRNA synthetase ArgS [Pantoea ananatis AJ13355]
          Length = 562

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 193/330 (58%), Gaps = 30/330 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E+A PG
Sbjct: 21  QFGDYQANGIMAVAKKLG-----QAPRQLAETVIQ--------HLDLTGIASKVEIAGPG 67

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLN----KKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N+FL R +  E  +    N +Q P L     +   ++VD+S+PN+AKEMHVGH+RSTI
Sbjct: 68  FINIFLDRGWLAEHAR----NALQHPRLGVARVEPQTIVVDYSAPNVAKEMHVGHVRSTI 123

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD   R L +LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+E+
Sbjct: 124 IGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAFLEKQQNENHAEM-ALADLEGFYREA 182

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER--- 475
           K+ +DED  F +RA + VV LQ  D   ++ W+ + D++    Q IYDRLNVTLT +   
Sbjct: 183 KRTYDEDPEFAERARRYVVKLQGGDDYCRQMWKKLVDITMSQNQHIYDRLNVTLTRKDVM 242

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTS 530
           GES Y   +  +V  L+ KGL    +G  +++    +++   PM ++  K DGG+ Y T+
Sbjct: 243 GESLYNDMLPGIVADLKAKGLAVESEGATVVFLDEYQNKEGEPMGVIIQKKDGGYLYTTT 302

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           D+A  + R E   AD ++Y  D  Q  H +
Sbjct: 303 DIACAKYRYETLHADRVIYYIDSRQHQHLQ 332



 Score =  217 bits (553), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 187/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R L +LGH+V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 121 STIIGDAAVRTLAFLGHNVIRANHVGDWGTQFGMLIAFLEKQQNENHAEMA-LADLEGFY 179

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K+ +DED  F +RA + VV LQ  D   ++ W+ + D++    Q IYDRLNVTLT +
Sbjct: 180 REAKRTYDEDPEFAERARRYVVKLQGGDDYCRQMWKKLVDITMSQNQHIYDRLNVTLTRK 239

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 240 DVMGESLYNDMLPGIVADLKAKGLAVESEGATVVFLDEYQNKEGEPMGVIIQKKDGGYLY 299

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H +      +KAG + P    ++   FG++
Sbjct: 300 TTTDIACAKYRYETLHADRVIYYIDSRQHQHLQQAWTIVRKAGYV-PESVPLEHHAFGMM 358

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T+KLS+LLDE   R+   + +KN   E++  E     + V    +K
Sbjct: 359 LGKDGRPFKTRSGGTIKLSDLLDEAYDRAYSLVSEKN--PEMSEEERRALAEVVGVSAVK 416

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI ++
Sbjct: 417 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIEAD 465



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   + +KN   E++  E     + V    +KYADLS +R  DY+F +D ML   GNTA
Sbjct: 386  RAYSLVSEKN--PEMSEEERRALAEVVGVSAVKYADLSKSRTTDYIFDWDNMLAFEGNTA 443

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ S+ R AGI ++ ++       ++L  ++E  LA  LL+  +V+  V RD
Sbjct: 444  PYMQYAYTRVLSVFRKAGIEADAIQ-----ADITLTDDREALLATRLLQFEEVITQVARD 498

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++  FS FY++C  +  + E   ++    RL +A  TAK +K   D L
Sbjct: 499  GTPHVMCAYLYDVAGLFSGFYEHCPILAAEDEATRQS----RLQIAALTAKTLKLGLDTL 554

Query: 1112 NIRTVHKM 1119
             I+TV +M
Sbjct: 555  GIKTVDRM 562



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 21/110 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E A PG
Sbjct: 21  QFGDYQANGIMAVAKKLG-----QAPRQLAETVIQ--------HLDLTGIASKVEIAGPG 67

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLN----KKLRVLVDFSSPNIARK 152
           F+N+FL R +  E  +    N +Q P L     +   ++VD+S+PN+A++
Sbjct: 68  FINIFLDRGWLAEHAR----NALQHPRLGVARVEPQTIVVDYSAPNVAKE 113


>gi|227355376|ref|ZP_03839777.1| arginyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|425067932|ref|ZP_18471048.1| arginyl-tRNA synthetase [Proteus mirabilis WGLW6]
 gi|425072669|ref|ZP_18475775.1| arginyl-tRNA synthetase [Proteus mirabilis WGLW4]
 gi|227164600|gb|EEI49471.1| arginyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|404596443|gb|EKA96963.1| arginyl-tRNA synthetase [Proteus mirabilis WGLW4]
 gi|404600670|gb|EKB01100.1| arginyl-tRNA synthetase [Proteus mirabilis WGLW6]
          Length = 576

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 156/443 (35%), Positives = 233/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++ +LS+  + A+  A    G    S     +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAFLSEKISMAMSAA----GAPADSEPLVRQSAKVQFGDYQANGVMGAAKKMGIP-- 54

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK------ 318
              P  +A+ I          +  +  + DK+E+A PGF+N+FLS V+  +Q +      
Sbjct: 55  ---PRQLAEKILE--------HLDITDIADKVEIAGPGFINIFLSPVWVAQQAEFALADE 103

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + +  V P T      +++D+SSPN+AK+MHVGHLRSTIIGD  +R L +LGH+V+R N
Sbjct: 104 HLNITKVTPET------IVIDYSSPNVAKQMHVGHLRSTIIGDASARTLSFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           H+GDWGTQFGMLIA+L+ K  +       +ADL+ FY+E+KK +DEDE+F +RA   VV 
Sbjct: 158 HLGDWGTQFGMLIAYLEKK-QNENAADMALADLEEFYREAKKCYDEDEVFAERARNYVVR 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   +  W  + D++ +  Q  Y RLNVTLTE    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRTMWRKLVDITMQQNQLTYQRLNVTLTEDDIMGESLYNPMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E+  A+ +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRHEQLHANRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+  D + L H       FGM++   +D  
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYIP-DSMSLEH-----HMFGMMLG--KDGR 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTVRLTDLLDEAHER 400



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 191/354 (53%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R L +LGH+V+R NH+GDWGTQFGMLIA+L+ K  +       +ADL+ FY
Sbjct: 135 STIIGDASARTLSFLGHNVIRANHLGDWGTQFGMLIAYLEKK-QNENAADMALADLEEFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE+F +RA   VV LQ  D   +  W  + D++ +  Q  Y RLNVTLTE 
Sbjct: 194 REAKKCYDEDEVFAERARNYVVRLQGGDEYCRTMWRKLVDITMQQNQLTYQRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DIMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRHEQLHANRVLYYIDSRQHQHLMQAWTIVRKAGYI-PDSMSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG TV+L++LLDE   R+L  +++KN   ++   EL+   + V  G +K
Sbjct: 373 LGKDGRPFKTRSGGTVRLTDLLDEAHERALTLIREKN--PDMDEEELNNIARVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ASI + A I+     +P
Sbjct: 431 YADLSKNRTTDYIFDWDLMLSFEGNTAPYMQYAYTRVASIFKRAEIDESALTQP 484



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 109/188 (57%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  +++KN   ++   EL+   + V  G +KYADLS NR  DY+F +D ML   GNTA
Sbjct: 400  RALTLIREKN--PDMDEEELNNIARVVGIGAVKYADLSKNRTTDYIFDWDLMLSFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI + A I+      +A + P+SL    E  LA  L++ ++ +  V R+
Sbjct: 458  PYMQYAYTRVASIFKRAEIDE-----SALTQPISLTQPHEKQLALRLVQFDETITQVARE 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++ +FS FY+NC  +  + +     V   RL LA  TA+ +K+  + L
Sbjct: 513  GTPHVMCAYLYDLAQSFSGFYENCPILSAEDD----NVRQSRLKLARLTARTLKQGLETL 568

Query: 1112 NIRTVHKM 1119
             I TV +M
Sbjct: 569  GIETVDRM 576



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++ +LS+  + A+  A    G    S     +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAFLSEKISMAMSAA----GAPADSEPLVRQSAKVQFGDYQANGVMGAAKKMGIP-- 54

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM------K 122
              P  +A+ I          +  +  + DK+E A PGF+N+FLS V+  +Q       +
Sbjct: 55  ---PRQLAEKILE--------HLDITDIADKVEIAGPGFINIFLSPVWVAQQAEFALADE 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + +  V P T      +++D+SSPN+A++
Sbjct: 104 HLNITKVTPET------IVIDYSSPNVAKQ 127


>gi|167036128|ref|YP_001671359.1| arginyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|189083542|sp|B0KN43.1|SYR_PSEPG RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|166862616|gb|ABZ01024.1| arginyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 578

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 209/370 (56%), Gaps = 51/370 (13%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K     G K  P D+A+ + + +       P+ A  I K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKLINAL-------PASAD-ISKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLR 355
           N F        Q  D + N +     + +L         +V++D S+PN+AKEMHVGHLR
Sbjct: 88  NFF--------QNTDALANRLDAALADARLGVRKAGPSEKVVIDMSAPNLAKEMHVGHLR 139

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415
           STIIGD+++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDSVARVLEFLGDNVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
           + +KKRFDE E F  RA   VV LQ  DP+    W    D+S    QK Y+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFATRARGLVVKLQAGDPECLALWTRFKDISLSHCQKTYELLNVKLTMA 255

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTY 527
              GES Y   +  +V  L+ KGLL    G + ++ E+  +     +P+ + K+DGG+ Y
Sbjct: 256 DVMGESAYNDDLANVVADLKAKGLLVESQGAQCVFLEEFKNSEGEPLPVIVQKADGGYLY 315

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
            T+DLAA+R R     AD  +Y  D  Q +HF  + E       ++R   ++GH  +++ 
Sbjct: 316 ATTDLAAVRYRSNVLNADRALYFVDQRQALHFNQVFE-------VARRAGFVGHP-MQME 367

Query: 588 HVGDWGTQFG 597
           H+G +GT  G
Sbjct: 368 HMG-FGTMNG 376



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/376 (38%), Positives = 198/376 (52%), Gaps = 58/376 (15%)

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
            +R+    EK    +   +L + +H   L  STIIGD+++R+LE+LG +V+R NHVGDWG
Sbjct: 110 GVRKAGPSEKVVIDMSAPNLAKEMHVGHLR-STIIGDSVARVLEFLGDNVIRQNHVGDWG 168

Query: 594 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 653
           TQFGML+A+LQ+  P     S  ++DL+ FY+ +KKRFDE E F  RA   VV LQ  DP
Sbjct: 169 TQFGMLMAYLQEN-P---ITSDELSDLENFYRAAKKRFDESEEFATRARGLVVKLQAGDP 224

Query: 654 DYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSLTK 710
           +    W    D+S    QK Y+ LNV LT     GES Y   +  +V  L+ KG L  ++
Sbjct: 225 ECLALWTRFKDISLSHCQKTYELLNVKLTMADVMGESAYNDDLANVVADLKAKGLLVESQ 284

Query: 711 KLGIVYV--------------------------TDLG---------------------QG 723
               V++                          TDL                      Q 
Sbjct: 285 GAQCVFLEEFKNSEGEPLPVIVQKADGGYLYATTDLAAVRYRSNVLNADRALYFVDQRQA 344

Query: 724 VHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS 783
           +HF  + E A++AG +  +  +M+ +GFG + G D + FKTR G TVKL +LL E   R+
Sbjct: 345 LHFNQVFEVARRAGFVG-HPMQMEHMGFGTMNGADGRPFKTRDGGTVKLIDLLTEAKERA 403

Query: 784 LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 843
              +K+KN    LT  EL    + V  G +KYADLS +R  DY F+F+ ML+  GNTA Y
Sbjct: 404 YALVKEKN--PSLTEAELRHIGEVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPY 461

Query: 844 LLYAYTRIASIARTAG 859
           LLYAYTR+A + R  G
Sbjct: 462 LLYAYTRVAGVFRKLG 477



 Score =  103 bits (257), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++  LT  EL    + V  G +KYADLS +R  DY F+F+ ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPSLTEAELRHIGEVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G   +++        + L+   E  LA  L +  ++L  V      H LC 
Sbjct: 468  RVAGVFRKLGKGFDEVE-----GNIVLQAAHEQDLAARLAQFGEILNNVADKGTPHVLCS 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+
Sbjct: 523  YLYDLAGLFSSFYENCPILAAETLEQQQS----RLRLAALTGRTLKQ 565


>gi|395799783|ref|ZP_10479063.1| arginyl-tRNA ligase [Pseudomonas sp. Ag1]
 gi|421138687|ref|ZP_15598742.1| arginyl-tRNA synthetase [Pseudomonas fluorescens BBc6R8]
 gi|395336288|gb|EJF68149.1| arginyl-tRNA ligase [Pseudomonas sp. Ag1]
 gi|404510074|gb|EKA23989.1| arginyl-tRNA synthetase [Pseudomonas fluorescens BBc6R8]
          Length = 578

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 158/407 (38%), Positives = 220/407 (54%), Gaps = 49/407 (12%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V +T +K     GDF  N AM L K    K  
Sbjct: 4   TIRQLIQQALTQLVNEGVLPEGLTPAIQVENTRDK---THGDFASNIAMMLAKPAGLK-- 58

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQIK 318
              P D+A+ I     + L  +P     + K E+A PGF+N F       SR+ A     
Sbjct: 59  ---PRDLAEKI----IAALPADPQ----VTKAEIAGPGFINFFQNTQALASRLDAALADA 107

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            I V    P       RV +D S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG DV+R N
Sbjct: 108 KIGVRKAGPAQ-----RVAIDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDDVIRQN 162

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY+ +KKRFDE E F  RA   VV 
Sbjct: 163 HVGDWGTQFGMLMAYLQEN-P---ITSNELSDLENFYRAAKKRFDESEEFADRARGLVVK 218

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D +  + W    ++S    Q+IY+ LNV LT     GES Y   +  +V  L+ KG
Sbjct: 219 LQAGDAECLELWGRFREISLSHCQEIYELLNVKLTMADVMGESAYNDDLINVVNDLKAKG 278

Query: 496 LLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           LL   +G + ++ E     D   +P+ IVK+DGG+ Y T+DLAA+R R    KAD  +Y 
Sbjct: 279 LLVESNGAQCVFLEEFKTADGDPLPVIIVKADGGYLYATTDLAAVRYRSGVLKADRALYF 338

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            D  Q +HF+ + E       ++R   ++ H  +++ H+G +GT  G
Sbjct: 339 VDQRQALHFQQVFE-------VARRAGFVTHP-MQMEHMG-FGTMNG 376



 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 140/362 (38%), Positives = 194/362 (53%), Gaps = 66/362 (18%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG DV+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDDVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSNELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  D +  + W    ++S    Q+IY+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFADRARGLVVKLQAGDAECLELWGRFREISLSHCQEIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLINVVNDLKAKGLLVESNGAQCVFLEEFKTADGDPLPVIIVKADGGYLY 315

Query: 707 ------SLTKKLGIV------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                 ++  + G++      Y  D  Q +HF+ + E A++AG +  +  +M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGVLKADRALYFVDQRQALHFQQVFEVARRAGFVT-HPMQMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL+E   R+ + +K+KN   EL   +L    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLNEAQDRAYNLVKEKN--PELAEADLRNIARVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG---------INSEDP 865
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G         IN E P
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLGKDFSEVEGQINLEAP 492

Query: 866 PE 867
            E
Sbjct: 493 HE 494



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 96/175 (54%), Gaps = 11/175 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+ + +K+KN   EL   +L    + V  G +KYADLS +R  DY F+F+ ML+  GNTA
Sbjct: 402  RAYNLVKEKN--PELAEADLRNIARVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTA 459

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A + R  G +  ++        ++LE   E  LA  L +  +VL  V   
Sbjct: 460  PYLLYAYTRVAGVFRKLGKDFSEV-----EGQINLEAPHEQELAAKLAQFGEVLNSVGEK 514

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
               H LC YLY+++  FS FY+NC  +  D E + ++    RL LA    + +K+
Sbjct: 515  GTPHILCTYLYEVAGLFSSFYENCPILTADDEAQKQS----RLRLAALAGRTLKQ 565


>gi|334124609|ref|ZP_08498609.1| arginine--tRNA ligase [Enterobacter hormaechei ATCC 49162]
 gi|333388272|gb|EGK59452.1| arginine--tRNA ligase [Enterobacter hormaechei ATCC 49162]
          Length = 577

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/340 (39%), Positives = 189/340 (55%), Gaps = 36/340 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MPPRQLAEQVL--------THLDLTGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +    +   + +   GV  P       V+VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLASHVDAALKSDRLGVAQPAAQT---VVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  DP + + W  + D++    Q  Y+RLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDPYFLEMWRKLVDITMSQNQLTYNRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ K L    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKNLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTII 568
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV 352



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/348 (39%), Positives = 188/348 (54%), Gaps = 56/348 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  DP + + W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDPYFLEMWRKLVDITMSQNQLTYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-------------------------LTKKLG--- 713
              GES Y   +  +V  L+ K NL+                         + KK G   
Sbjct: 254 DVMGESLYNPMLPGIVADLKAK-NLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYL 312

Query: 714 --------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                               ++Y  D  Q  H        +KAG + P+   ++   FG+
Sbjct: 313 YTTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGM 371

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           +LG+D K FKTR+G TVKLS+LLDE L R+   + +KN   ++   EL +   AV  G +
Sbjct: 372 MLGKDGKPFKTRAGGTVKLSDLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAV 429

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 430 KYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKANID 477



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 109/191 (57%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I   D  V A +T V+L  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKANI---DESVLANAT-VTLTEDREAQLAARLLQFEETLFVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             RD   H +C YLYD++  FS FY++C  +  ++E     V   RL LA+ TAK +K   
Sbjct: 511  ARDGTPHVMCAYLYDLAGLFSGFYEHCPILSAESEA----VRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 48.5 bits (114), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MPPRQLAEQVL--------THLDLTGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +    +   + +   GV  P       V+VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLASHVDAALKSDRLGVAQPAAQT---VVVDYSAPNVAKE 127


>gi|332532695|ref|ZP_08408571.1| arginyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037911|gb|EGI74360.1| arginyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 580

 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/357 (38%), Positives = 201/357 (56%), Gaps = 60/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD+I R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   +  
Sbjct: 133 HLR----STIIGDSIVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDTVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y R
Sbjct: 189 LADLETFYRDAKKRFDDEEGFADKARDYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKR 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSL------------------------- 708
           LNVTLT+     ES Y   +  ++  L+ K N+++                         
Sbjct: 249 LNVTLTQADIMAESAYNAELNDIISLLKDK-NIAVESQGAQVVFLDELANKDGEPSAFIV 307

Query: 709 --------------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                               + KLG   I+   D  Q +HF  +E  A+KAG+L  ++T 
Sbjct: 308 QKSGGGFLYATTDLAACDYRSNKLGADRILIFVDARQNLHFNQVELTARKAGLLR-DETS 366

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805
            +F  FG ++G D K FKTR+G TVKL++LL+E + R+  KL +  R ++L+ ++ SE  
Sbjct: 367 YEFCPFGTMMGADNKPFKTRTGGTVKLADLLEESINRAAAKLAE--RESDLSDSDRSEIA 424

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           + V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTR+ SI R +G+++
Sbjct: 425 RKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRVRSIFRKSGVDA 481



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 188/333 (56%), Gaps = 27/333 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K  K      NP ++AQ I          N  ++ +  K E+A PG
Sbjct: 35  QFGDYQINAAMGAAKKMK-----SNPRELAQKIID--------NLDVSDIAQKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLN---KKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+ L   +  + +K    N      +N   K  +V+VD+SSPN+AKEMHVGHLRSTII
Sbjct: 82  FINIHLKPEFLAQSVK--AANNDAKLAVNEHAKPQKVVVDYSSPNLAKEMHVGHLRSTII 139

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKES 418
           GD+I R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   +  +ADL+ FY+++
Sbjct: 140 GDSIVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDTVALADLETFYRDA 199

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---R 475
           KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y RLNVTLT+    
Sbjct: 200 KKRFDDEEGFADKARDYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKRLNVTLTQADIM 259

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTS 530
            ES Y   +  ++  L+ K +     G ++++      +D       + KS GGF Y T+
Sbjct: 260 AESAYNAELNDIISLLKDKNIAVESQGAQVVFLDELANKDGEPSAFIVQKSGGGFLYATT 319

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           DLAA   R  +  AD I+   D  Q +HF  +E
Sbjct: 320 DLAACDYRSNKLGADRILIFVDARQNLHFNQVE 352



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 112/190 (58%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            + R+  KL +  R ++L+ ++ SE  + V  G +KYADLS +R  DY+F++D ML   G 
Sbjct: 401  INRAAAKLAE--RESDLSDSDRSEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGA 458

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA YL YAYTR+ SI R +G+++  L     ++ V++   +E ALA  LL++ +VL L+ 
Sbjct: 459  TAPYLQYAYTRVRSIFRKSGVDAATL-----NSDVAIVEPQEKALALKLLQLEEVLDLMI 513

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             +   H LC YLY++++ +  FY+ C  ++   EG   +V   RL+L    ++ ++   D
Sbjct: 514  SEATPHVLCGYLYELASLYMTFYEACPVLK---EGVEPSVRDSRLVLCNLVSRTLETGLD 570

Query: 1110 ILNIRTVHKM 1119
            +L I  + +M
Sbjct: 571  LLGIEVMEQM 580



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 20/130 (15%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K  K      NP ++AQ I          N  ++ +  K E A PG
Sbjct: 35  QFGDYQINAAMGAAKKMK-----SNPRELAQKIID--------NLDVSDIAQKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLN---KKLRVLVDFSSPNIARKGGFLYPHLPSQ 163
           F+N+ L   +  + +K    N      +N   K  +V+VD+SSPN+A++      HL S 
Sbjct: 82  FINIHLKPEFLAQSVK--AANNDAKLAVNEHAKPQKVVVDYSSPNLAKE--MHVGHLRST 137

Query: 164 IHDILISKAI 173
           I    I +A+
Sbjct: 138 IIGDSIVRAL 147


>gi|197284974|ref|YP_002150846.1| arginyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|238693143|sp|B4ETN5.1|SYR_PROMH RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|194682461|emb|CAR42387.1| arginyl-tRNA synthetase [Proteus mirabilis HI4320]
          Length = 576

 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 156/443 (35%), Positives = 233/443 (52%), Gaps = 60/443 (13%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++ +LS+  + A+  A    G    S     +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAFLSEKISMAMSAA----GAPADSEPLVRQSAKVQFGDYQANGVMGAAKKMGIP-- 54

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK------ 318
              P  +A+ I          +  +  + DK+E+A PGF+N+FLS V+  +Q +      
Sbjct: 55  ---PRQLAEKILE--------HLDITDIADKVEIAGPGFINIFLSPVWVAQQAEFALADE 103

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            + +  V P T      +++D+SSPN+AK+MHVGHLRSTIIGD  +R L +LGH+V+R N
Sbjct: 104 HLNITKVTPET------IVIDYSSPNVAKQMHVGHLRSTIIGDASARTLSFLGHNVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           H+GDWGTQFGMLIA+L+ K  +       +ADL+ FY+E+KK +DEDE+F +RA   VV 
Sbjct: 158 HLGDWGTQFGMLIAYLEKK-QNENAADMALADLEEFYREAKKCYDEDEVFAERARNYVVR 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D   +  W  + D++ +  Q  Y RLNVTLTE    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCRTMWRKLVDITMQQNQLTYQRLNVTLTEDDIMGESLYNPMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
           L    +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E+  A+ +
Sbjct: 277 LAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYTTTDIACAKYRHEQLHANRV 333

Query: 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
           +Y  D  Q  H  L++  TI+     R   Y+  D + L H       FGM++   +D  
Sbjct: 334 LYYIDSRQ--HQHLMQAWTIV-----RKAGYIP-DSMSLEH-----HMFGMMLG--KDGR 378

Query: 608 PDYLTKSPPIADLQAFYKESKKR 630
           P + T+S     L     E+ +R
Sbjct: 379 P-FKTRSGGTVRLTDLLDEAHER 400



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 191/354 (53%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R L +LGH+V+R NH+GDWGTQFGMLIA+L+ K  +       +ADL+ FY
Sbjct: 135 STIIGDASARTLSFLGHNVIRANHLGDWGTQFGMLIAYLEKK-QNENAADMALADLEEFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE+F +RA   VV LQ  D   +  W  + D++ +  Q  Y RLNVTLTE 
Sbjct: 194 REAKKCYDEDEVFAERARNYVVRLQGGDEYCRTMWRKLVDITMQQNQLTYQRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DIMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRHEQLHANRVLYYIDSRQHQHLMQAWTIVRKAGYI-PDSMSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG TV+L++LLDE   R+L  +++KN   ++   EL+   + V  G +K
Sbjct: 373 LGKDGRPFKTRSGGTVRLTDLLDEAHERALTLIREKN--PDMDEEELNNIARVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ASI + A I+     +P
Sbjct: 431 YADLSKNRTTDYIFDWDLMLSFEGNTAPYMQYAYTRVASIFKRADIDESALTQP 484



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 109/188 (57%), Gaps = 11/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+L  +++KN   ++   EL+   + V  G +KYADLS NR  DY+F +D ML   GNTA
Sbjct: 400  RALTLIREKN--PDMDEEELNNIARVVGIGAVKYADLSKNRTTDYIFDWDLMLSFEGNTA 457

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             Y+ YAYTR+ASI + A I+      +A + P+SL    E  LA  L++ ++ +  V R+
Sbjct: 458  PYMQYAYTRVASIFKRADIDE-----SALTQPISLTQPHEKQLALRLVQFDETITQVARE 512

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H +C YLYD++ +FS FY+NC  +  + +     V   RL LA  TA+ +K+  + L
Sbjct: 513  GTPHVMCAYLYDLAQSFSGFYENCPILSAEDD----NVRQSRLKLARLTARTLKQGLETL 568

Query: 1112 NIRTVHKM 1119
             I TV +M
Sbjct: 569  GIETVDRM 576



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++ +LS+  + A+  A    G    S     +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAFLSEKISMAMSAA----GAPADSEPLVRQSAKVQFGDYQANGVMGAAKKMGIP-- 54

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM------K 122
              P  +A+ I          +  +  + DK+E A PGF+N+FLS V+  +Q       +
Sbjct: 55  ---PRQLAEKILE--------HLDITDIADKVEIAGPGFINIFLSPVWVAQQAEFALADE 103

Query: 123 DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
            + +  V P T      +++D+SSPN+A++
Sbjct: 104 HLNITKVTPET------IVIDYSSPNVAKQ 127


>gi|157158431|ref|YP_001463181.1| arginyl-tRNA synthetase [Escherichia coli E24377A]
 gi|166980181|sp|A7ZN02.1|SYR_ECO24 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|157080461|gb|ABV20169.1| arginyl-tRNA synthetase [Escherichia coli E24377A]
          Length = 577

 Score =  228 bits (581), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/389 (36%), Positives = 208/389 (53%), Gaps = 41/389 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  + ++  + +        +K  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLDVATPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLLGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E   AD ++Y  D  Q  H  L++   I+     R   Y+   V   +H+  
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWAIV-----RKAGYVPESVPLEHHM-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
               FGM++      F      +  +ADL
Sbjct: 369 ----FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 138/349 (39%), Positives = 186/349 (53%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLLGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWAIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A IN E
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAEINEE 479



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A IN E L  A    PV +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKAEINEEQLAAA----PVIIREDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             R+   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  AREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----EVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +        +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLDVATPEKQTIVVDYSAPNVAKE 127


>gi|402700231|ref|ZP_10848210.1| arginyl-tRNA ligase [Pseudomonas fragi A22]
          Length = 578

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/327 (42%), Positives = 192/327 (58%), Gaps = 30/327 (9%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K     G K  P D+A+ I + + ++        + I K E+A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKIIAALPAD--------EQISKTEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F +      ++   + +   GV   T  + +R +VD S+PN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQNTQALASRLDAALADPKIGVHKAT--RPMRTVVDMSAPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R+LE+LG +V+R NHVGDWGTQFGML+A+L++  P     S  ++DL+ FY+ +KKR
Sbjct: 146 GVARVLEFLGDEVIRQNHVGDWGTQFGMLMAYLEEN-P---ITSDELSDLENFYRAAKKR 201

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE   F  RA   VV LQ  DPD    W    D+S    QKIY++LNV LT     GES
Sbjct: 202 FDESPEFADRARGLVVKLQAGDPDCLALWTKFKDISLSHCQKIYEQLNVKLTMADVMGES 261

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   +  +V  L+ KG+L   +G + ++       +   +P+ IVK+DGG+ Y T+DLA
Sbjct: 262 AYNDDLINVVNDLKAKGMLVESNGAQCVFLDEFKNAEGEPLPVIIVKADGGYLYATTDLA 321

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFR 560
           AIR R    KAD  +Y  D  Q +HF+
Sbjct: 322 AIRYRSGVLKADRALYFVDQRQALHFQ 348



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/347 (40%), Positives = 186/347 (53%), Gaps = 57/347 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG +V+R NHVGDWGTQFGML+A+L++  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDEVIRQNHVGDWGTQFGMLMAYLEEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA   VV LQ  DPD    W    D+S    QKIY++LNV LT  
Sbjct: 196 RAAKKRFDESPEFADRARGLVVKLQAGDPDCLALWTKFKDISLSHCQKIYEQLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLINVVNDLKAKGMLVESNGAQCVFLDEFKNAEGEPLPVIIVKADGGYLY 315

Query: 707 ------SLTKKLGI------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                 ++  + G+      +Y  D  Q +HF+ +   A+KAG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAIRYRSGVLKADRALYFVDQRQALHFQQVFAVARKAGFVT-HPMEMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN   EL   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLVDLLTEAKERAYTLVKEKN--PELAEDELRAIAKVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G N
Sbjct: 433 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLGKN 479



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 91/167 (54%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   EL    + V  G +KYADLS +R  DY F+FD ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPELAEDELRAIAKVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G N +++        + LE  +E  LA  L +  +VL  V      H LC 
Sbjct: 468  RVAGVFRKLGKNFDEV-----EGQIVLEAPQEQDLAAKLAQFGEVLNNVAEKGTPHTLCT 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLY+++  FS FY+NC  +  + E +  +    RL LA    + +K+
Sbjct: 523  YLYEVAGLFSSFYENCPILTAEDEAQKHS----RLRLAALAGRTLKQ 565



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 18/107 (16%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K     G K  P D+A+ I + + ++        + I K E A PGF+
Sbjct: 41  GDFASNIAMMLAK---PAGMK--PRDLAEKIIAALPAD--------EQISKTEIAGPGFL 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F +      ++   + +   GV   T  + +R +VD S+PN+A++
Sbjct: 88  NFFQNTQALASRLDAALADPKIGVHKAT--RPMRTVVDMSAPNLAKE 132


>gi|398901969|ref|ZP_10650710.1| arginyl-tRNA synthetase [Pseudomonas sp. GM50]
 gi|398179190|gb|EJM66810.1| arginyl-tRNA synthetase [Pseudomonas sp. GM50]
          Length = 623

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 160/456 (35%), Positives = 238/456 (52%), Gaps = 53/456 (11%)

Query: 158 PHLPSQIHDI--LISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVF 215
           P L   IH++  ++ K +   +  Q       +  +  +K+  +  + R  ++  ++ + 
Sbjct: 3   PDLSPHIHNLPAIVGKPVFATDNAQFFHQRIEAPPRLRSKEQTMKDTIRQLIQQAITQLV 62

Query: 216 THAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSI 275
              V    PE       V ++ +K   K GDF  N AM L K     G K  P D+A+ I
Sbjct: 63  NEGV---LPEGLSPAIQVENSRDK---KNGDFASNIAMMLAK---PAGMK--PRDLAEKI 111

Query: 276 ASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQIKDIIVNGVQPPT 329
            + + ++        + + K E+A PGF+N F       +R+ A      I V    P  
Sbjct: 112 IAALPAD--------ENVTKTEIAGPGFLNFFQNTQALATRLDAALADDHIGVRKAGPVQ 163

Query: 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
                R +VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG +V+R NHVGDWGTQFGM
Sbjct: 164 -----RTVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDEVIRQNHVGDWGTQFGM 218

Query: 390 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA 449
           L+A+LQ+        S  ++DL+ FY+ +K+RFDE   F  RA   VV LQ  DPD    
Sbjct: 219 LMAYLQEN----PITSDELSDLENFYRAAKQRFDESAEFADRARGLVVKLQAGDPDCLAL 274

Query: 450 WEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIM 506
           W    D+S    QKIY+ LNV LT     GES Y   +  +V  L+  GLL   +G + +
Sbjct: 275 WTKFKDISLSHCQKIYELLNVKLTMADVMGESAYNDDLINVVNDLKAAGLLVESNGAQCV 334

Query: 507 W-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
           +       D   +P+ IVK+DGG+ Y T+DLAA+R R    KAD  +Y  D  Q +HF+ 
Sbjct: 335 FLDEFKNADGDPLPVIIVKADGGYLYATTDLAAVRYRSGVLKADRALYFVDQRQALHFQQ 394

Query: 562 LEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
           + +       ++RL  ++ H  + + H+G +GT  G
Sbjct: 395 VFQ-------VARLAGFVTHP-MEMEHMG-FGTMNG 421



 Score =  211 bits (538), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/345 (38%), Positives = 181/345 (52%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+        S  ++DL+ FY
Sbjct: 185 STIIGDGVARVLEFLGDEVIRQNHVGDWGTQFGMLMAYLQEN----PITSDELSDLENFY 240

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA   VV LQ  DPD    W    D+S    QKIY+ LNV LT  
Sbjct: 241 RAAKQRFDESAEFADRARGLVVKLQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMA 300

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+  G L                                   
Sbjct: 301 DVMGESAYNDDLINVVNDLKAAGLLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLY 360

Query: 707 ------SLTKKLGI------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                 ++  + G+      +Y  D  Q +HF+ + + A+ AG +  +   M+ +GFG +
Sbjct: 361 ATTDLAAVRYRSGVLKADRALYFVDQRQALHFQQVFQVARLAGFVT-HPMEMEHMGFGTM 419

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN    L   EL    + V  G +K
Sbjct: 420 NGADGRPFKTRDGGTVKLIDLLTEAQERAYTLVKEKN--PTLAEDELRNIAKVVGIGAVK 477

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 478 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 522



 Score =  109 bits (273), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 91/167 (54%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++  L   EL    + V  G +KYADLS +R  DY F+FD ML+  GNTA YLLYAYT
Sbjct: 453  KEKNPTLAEDELRNIAKVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYT 512

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G +  ++        + LE   E  LA  L +  ++L  V+     H LC 
Sbjct: 513  RVAGVFRKLGKDFSEVE-----GQIVLEAPHEHELAAKLAQFGEILNNVSDKGTPHILCT 567

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  D   ++++    RL LA  T + +K+
Sbjct: 568  YLYDVAGLFSSFYENCPILGADTPVQMQS----RLRLAALTGRTLKQ 610


>gi|146305572|ref|YP_001186037.1| arginyl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|166232824|sp|A4XPN9.1|SYR_PSEMY RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|145573773|gb|ABP83305.1| arginyl-tRNA synthetase [Pseudomonas mendocina ymp]
          Length = 579

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 215/404 (53%), Gaps = 49/404 (12%)

Query: 203 DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 262
           DR++    L    T A+QV             +T +K     GDF  N AM L K    K
Sbjct: 14  DRLTADGVLPAGLTPAIQVE------------NTKDK---SHGDFASNIAMMLAKPAGMK 58

Query: 263 GEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV 322
                P D+A+ + + + ++          I K+E+A PGF+N F +     ++++  + 
Sbjct: 59  -----PRDLAEKLIAALPADAG--------IAKVEIAGPGFLNFFQNSDALAQRLEAALA 105

Query: 323 NGVQPPTLNKKL-RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
           +       N    RV+VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG  V+R NHVG
Sbjct: 106 DAQLGVHKNGPAQRVVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDTVIRQNHVG 165

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGML+A++Q+   +       +ADL+ FY+ +KKRFDE   F  RA + VV LQ 
Sbjct: 166 DWGTQFGMLLAYMQE---NPAAAESELADLEGFYRAAKKRFDESPEFADRARELVVQLQA 222

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D +  + W    D+S    Q +YDRL V L+    +GES Y   + Q+V  L  KGLL 
Sbjct: 223 GDAECLRLWHRFNDISLSHCQALYDRLGVKLSMADVKGESAYNDDLPQVVADLAAKGLLT 282

Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
            D+G + ++       +   +P+ + K+ GG+ Y T+DLAA R R    KAD ++Y  D 
Sbjct: 283 EDNGAQCVFMDEFKNAEGNPLPLIVQKAGGGYLYATTDLAATRYRAGVLKADRVLYFVDQ 342

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            Q +HF+++     +   +   +E        L H+G +GT  G
Sbjct: 343 RQALHFQMVFACARLAGFVPASME--------LEHMG-FGTMNG 377



 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 185/345 (53%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A++Q+   +       +ADL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYMQE---NPAAAESELADLEGFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  D +  + W    D+S    Q +YDRL V L+  
Sbjct: 197 RAAKKRFDESPEFADRARELVVQLQAGDAECLRLWHRFNDISLSHCQALYDRLGVKLSMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   + Q+V  L  KG L+                       + +K G     
Sbjct: 257 DVKGESAYNDDLPQVVADLAAKGLLTEDNGAQCVFMDEFKNAEGNPLPLIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+++  CA+ AG + P    ++ +GFG +
Sbjct: 317 ATTDLAATRYRAGVLKADRVLYFVDQRQALHFQMVFACARLAGFV-PASMELEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE  +R+ + +K KN   EL   EL    + V    +K
Sbjct: 376 NGPDGRPFKTRDGGTVKLVQLLDEAEQRAYELVKSKN--PELAEDELRRIARVVGIASVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML   GNTA YLLYAYTR+A + R  G
Sbjct: 434 YADLSKHRASDYSFNFDLMLSFEGNTAPYLLYAYTRVAGVFRKLG 478



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K+++ EL   EL    + V    +KYADLS +R  DY F+FD ML   GNTA YLLYAYT
Sbjct: 409  KSKNPELAEDELRRIARVVGIASVKYADLSKHRASDYSFNFDLMLSFEGNTAPYLLYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G   +++        ++L  E+E ALA  L +  ++L  V      H LC 
Sbjct: 469  RVAGVFRKLGKGIDEI-----GGRIALVAEQEQALAAKLAQFGELLASVADKGTPHMLCS 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  + E         RL L   T + +K+
Sbjct: 524  YLYDLAGLFSSFYENCPILAAEDE----ATRDSRLRLTALTGRTLKQ 566


>gi|308187218|ref|YP_003931349.1| arginyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308057728|gb|ADO09900.1| Arginyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 576

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 44/399 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAEAVIQ--------HLDLTGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  +  ++ +     GVQ   L +   ++VD+S+PN+AKEMHVGH+RSTII
Sbjct: 82  FINIFLDHNWLAKHAREALSLPRLGVQ---LAEPQTIVVDYSAPNVAKEMHVGHIRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAFLEKQQNENHAEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
           + +DED  F +RA   VV LQ  D   ++ W+ + D++    QKIYDR+NVTLT     G
Sbjct: 198 RTYDEDPEFAERARGYVVKLQGGDEYCRQMWKKLVDITMSQNQKIYDRMNVTLTRNDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L++KGL    +G  +++    +++   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNDMLPGIVADLKQKGLAVESEGATVVYLDEFQNKEGEPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E  KAD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H   
Sbjct: 318 IACAKYRYETLKADRVLYYIDSRQ--HQHLVQAWTIV-----RKAGYVPESVPLEHHA-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
               FGM++   +D  P + T+S     L     E+ +R
Sbjct: 369 ----FGMMLG--KDGRP-FKTRSGGTIKLSDLLDEAWQR 400



 Score =  221 bits (562), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 190/349 (54%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAFLEKQQNENHAEM-ALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K+ +DED  F +RA   VV LQ  D   ++ W+ + D++    QKIYDR+NVTLT  
Sbjct: 194 REAKRTYDEDPEFAERARGYVVKLQGGDEYCRQMWKKLVDITMSQNQKIYDRMNVTLTRN 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVADLKQKGLAVESEGATVVYLDEFQNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLKADRVLYYIDSRQHQHLVQAWTIVRKAGYV-PESVPLEHHAFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T+KLS+LLDE  +R+   +++KN   E++  E+    + +    +K
Sbjct: 373 LGKDGRPFKTRSGGTIKLSDLLDEAWQRAYTLVREKN--PEMSEAEVKALAEVMGISAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI+++
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIDAD 479



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   +++KN   E++  E+    + +    +KYADLS +R  DY+F +D ML   GNT
Sbjct: 399  QRAYTLVREKN--PEMSEAEVKALAEVMGISAVKYADLSKSRTTDYIFDWDNMLAFEGNT 456

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A Y+ YAYTR+ S+ R AGI+++ L        + +  E+E  LA  LL+  +V+  V R
Sbjct: 457  APYMQYAYTRVLSVFRKAGIDADSL-----DAEIVISEEREAQLATRLLQFEEVITQVAR 511

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
            D   H +C YLYD++  FS FY++C  +  +++         RL LA  TAK +K+  D 
Sbjct: 512  DGTPHVMCAYLYDLAGLFSGFYEHCPILSAESDA----TRLSRLQLAALTAKTLKQGLDT 567

Query: 1111 LNIRTVHKM 1119
            L I TV +M
Sbjct: 568  LGIDTVERM 576



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAEAVIQ--------HLDLTGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIV---NGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  +  ++ +     GVQ   L +   ++VD+S+PN+A++
Sbjct: 82  FINIFLDHNWLAKHAREALSLPRLGVQ---LAEPQTIVVDYSAPNVAKE 127


>gi|157371031|ref|YP_001479020.1| arginyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|166987305|sp|A8GFK2.1|SYR_SERP5 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|157322795|gb|ABV41892.1| arginyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 576

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/379 (37%), Positives = 206/379 (54%), Gaps = 42/379 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQVLLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P  +A+ +  ++         L  V  K+E+A PGF+N+FL+  +  +Q   ++   
Sbjct: 53  -MPPRQLAEKVVQLL--------DLGDVASKVEIAGPGFINIFLNSQWVAQQADRVL--- 100

Query: 325 VQPPTLN----KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
              P L+    K+  +++D+S+PN+AKEMHVGHLRSTIIGD  +R  E+LGH V+R NHV
Sbjct: 101 -SAPKLDIAPVKQQTIVIDYSAPNVAKEMHVGHLRSTIIGDAAARTQEFLGHKVIRANHV 159

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGMLIA+L+ K  +       ++DL+ FY+E+KK +DED  F +RA   VV LQ
Sbjct: 160 GDWGTQFGMLIAYLE-KMQNENASDMGLSDLEQFYREAKKHYDEDADFAERARAYVVKLQ 218

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLL 497
             D    K W  + D++    Q  Y+RLNVTLTE    GES Y   +  +V  L+ KGL 
Sbjct: 219 GGDQYCLKMWRKLVDITMAQNQLTYNRLNVTLTEDDVMGESLYNAMLPGIVADLKAKGLA 278

Query: 498 ELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
              +G  +++        GE  G I   I K DGG+ Y T+D+A  + R E   AD ++Y
Sbjct: 279 VESEGATVVFLDEYKNKDGEPMGVI---IQKKDGGYLYTTTDIACAKYRYETLGADRVLY 335

Query: 550 VTDLGQGVHFRLLEESTII 568
             D  Q  H  L++  TI+
Sbjct: 336 YIDSRQ--HQHLMQAWTIV 352



 Score =  219 bits (559), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/361 (38%), Positives = 189/361 (52%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R  E+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTQEFLGHKVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+E+KK +DED  F +RA   VV LQ  D    K W  + D++    Q  Y+RL
Sbjct: 187 SDLEQFYREAKKHYDEDADFAERARAYVVKLQGGDQYCLKMWRKLVDITMAQNQLTYNRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLTE    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTEDDVMGESLYNAMLPGIVADLKAKGLAVESEGATVVFLDEYKNKDGEPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P+   ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYI-PDSLSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   ++   E+     A
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAVDRAGKLIAEKN--PDMPAEEMQSLANA 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+AS+ + AG++  +   
Sbjct: 424 VGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASVFKRAGVDESNLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 102/178 (57%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   E+     AV  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPAEEMQSLANAVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            AS+ + AG++  +L     + P+ +  E+E  LA  LL+  +V+  V R+   H +C YL
Sbjct: 468  ASVFKRAGVDESNL-----TLPLVMTEEREITLATRLLQFEEVITTVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D+E         RL L+  TAK +K   D L I TV +M
Sbjct: 523  YDLAGLFSGFYEHCQILNADSE----EARQSRLKLSLLTAKTLKVGLDTLGIETVERM 576



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 25/148 (16%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQVLLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
              P  +A+ +  ++         L  V  K+E A PGF+N+FL+  +  +Q   ++   
Sbjct: 53  -MPPRQLAEKVVQLL--------DLGDVASKVEIAGPGFINIFLNSQWVAQQADRVL--- 100

Query: 129 VQPPTLN----KKLRVLVDFSSPNIARK 152
              P L+    K+  +++D+S+PN+A++
Sbjct: 101 -SAPKLDIAPVKQQTIVIDYSAPNVAKE 127


>gi|398801444|ref|ZP_10560686.1| arginyl-tRNA synthetase, partial [Pantoea sp. GM01]
 gi|398091765|gb|EJL82193.1| arginyl-tRNA synthetase, partial [Pantoea sp. GM01]
          Length = 559

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 189/335 (56%), Gaps = 40/335 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K        + P  +A+ +          +  L  +  K+E+A PG
Sbjct: 18  QFGDYQANGIMAVAKKLG-----QAPRQLAEQVIQ--------HLDLNGIASKVEIAGPG 64

Query: 303 FVNVFLSRVYAGEQIKDII------VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL R +   Q    +      V+ V P T      ++VD+S+PN+AK+MHVGH+RS
Sbjct: 65  FINIFLDRAWLAAQTAQALQLPRLGVSTVSPQT------IVVDYSAPNVAKQMHVGHVRS 118

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L +K  +   ++  +ADL+AFY+
Sbjct: 119 TIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYL-EKQQNENHEAIALADLEAFYR 177

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER- 475
           E+K  +D DE F +RA   VV LQ  D   +  W+ + D++    Q +YDRLNVTLT + 
Sbjct: 178 EAKITYDADEAFAERARSYVVKLQGGDEYCRSMWKKLVDITMSQNQLVYDRLNVTLTRKD 237

Query: 476 --GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGF 525
             GES Y   +  +V  L +KGL    +G  +++        GE  G I   I K DGG+
Sbjct: 238 VMGESLYNDMLPGIVADLREKGLAVTSEGATVVFLDEFKNKEGEPMGVI---IQKKDGGY 294

Query: 526 TYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
            Y T+D+A  + R E   AD ++Y  D  Q  H +
Sbjct: 295 LYTTTDIACAKYRFETLHADRVLYYIDSRQHQHLQ 329



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 192/349 (55%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L +K  +   ++  +ADL+AFY
Sbjct: 118 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYL-EKQQNENHEAIALADLEAFY 176

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K  +D DE F +RA   VV LQ  D   +  W+ + D++    Q +YDRLNVTLT +
Sbjct: 177 REAKITYDADEAFAERARSYVVKLQGGDEYCRSMWKKLVDITMSQNQLVYDRLNVTLTRK 236

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L +KG                         + + KK G    
Sbjct: 237 DVMGESLYNDMLPGIVADLREKGLAVTSEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 296

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H +      +KAG + P    ++   FG++
Sbjct: 297 TTTDIACAKYRFETLHADRVLYYIDSRQHQHLQQAWTIVRKAGYV-PESVPLEHHAFGMM 355

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T++L++LLDE + R+   + +KN   E++  EL +  + V  G +K
Sbjct: 356 LGKDGRPFKTRSGGTIRLADLLDEAVERAHALVSEKN--PEMSAQELKDLSEVVGIGAVK 413

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI+++
Sbjct: 414 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIDAD 462



 Score =  136 bits (343), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 106/178 (59%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ E++  EL +  + V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 391  KNPEMSAQELKDLSEVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 450

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AGI+++ L     S  + L  E+E  LA  LL+  +V+  V RD   H +C YL
Sbjct: 451  LSVFRKAGIDADSL-----SGDMVLTEEREAQLATRLLQFEEVITQVARDGTPHVMCAYL 505

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  + E    T+   RL LA  TAK +K+  D L I+TV +M
Sbjct: 506  YELAGQFSGFYEHCPILSAEDE----TIRNSRLQLAALTAKTLKQGLDTLGIKTVERM 559



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 25/112 (22%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K        + P  +A+ +          +  L  +  K+E A PG
Sbjct: 18  QFGDYQANGIMAVAKKLG-----QAPRQLAEQVIQ--------HLDLNGIASKVEIAGPG 64

Query: 107 FVNVFLSRVYAGEQMKDII------VNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL R +   Q    +      V+ V P T      ++VD+S+PN+A++
Sbjct: 65  FINIFLDRAWLAAQTAQALQLPRLGVSTVSPQT------IVVDYSAPNVAKQ 110


>gi|345874302|ref|ZP_08826116.1| arginine--tRNA ligase [Neisseria weaveri LMG 5135]
 gi|343970575|gb|EGV38748.1| arginine--tRNA ligase [Neisseria weaveri LMG 5135]
          Length = 572

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/328 (39%), Positives = 192/328 (58%), Gaps = 28/328 (8%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGDFQ N  M   K       K+NP ++AQ++A+ ++         + VI+  EVA PGF
Sbjct: 35  FGDFQINGVMGTAK-----QAKQNPRELAQTVAAALSG--------SSVIESAEVAGPGF 81

Query: 304 VNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIG 360
           +N+ L   +  E I+  + +   GV+    ++   V++D+SSPN+AKEMHVGHLRS+IIG
Sbjct: 82  INLRLHADFLAENIQTALNDSRFGVKETAQSQT--VVIDYSSPNLAKEMHVGHLRSSIIG 139

Query: 361 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK 420
           D+I+R+L Y+GH VV  NHVGDWGTQFGML+A++ ++          +ADL+ FY+ +K 
Sbjct: 140 DSIARVLAYMGHRVVAQNHVGDWGTQFGMLVAYMVEQ--QKADAEFKLADLEQFYRNAKV 197

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GE 477
           RFDEDE F   + + VV LQ  D      W+   ++S    Q +YD L + LT     GE
Sbjct: 198 RFDEDEAFADTSREYVVKLQGGDEAVLALWKQFVEISLSHAQNVYDTLGLKLTPEDVAGE 257

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDL 532
           S Y   ++ ++  L +KGL   DDG K+++ ++     G     IV K  GGF Y ++DL
Sbjct: 258 SMYNDDLQPVIDELSEKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKKGGGFLYSSTDL 317

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           A +R R+    AD ++YV D  Q +HF+
Sbjct: 318 ACVRYRVGRLNADRLLYVVDARQALHFQ 345



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 191/366 (52%), Gaps = 59/366 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+I+R+L Y+GH VV  NHVGDWGTQFGML+A++ ++          +ADL+ FY
Sbjct: 135 SSIIGDSIARVLAYMGHRVVAQNHVGDWGTQFGMLVAYMVEQ--QKADAEFKLADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDEDE F   + + VV LQ  D      W+   ++S    Q +YD L + LT  
Sbjct: 193 RNAKVRFDEDEAFADTSREYVVKLQGGDEAVLALWKQFVEISLSHAQNVYDTLGLKLTPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   ++ ++  L +KG                           + KK G    
Sbjct: 253 DVAGESMYNDDLQPVIDELSEKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKKGGGFLY 312

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++YV D  Q +HF+ +   A+KAG L P +   + + FG +
Sbjct: 313 SSTDLACVRYRVGRLNADRLLYVVDARQALHFQQMFTVARKAGWL-PEQVAAEHIAFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL ELLDE   R+   +K KN   +L+  E +   + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVELLDEAQERATALVKAKN--PDLSGEEAANIGKTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP----EPDP 870
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ + AG  + D P    EP  
Sbjct: 430 YADLSKNRTSDYVFDWDSMLSFEGNTAPYLQYAYTRVQSVFKKAGEWNADAPLQLNEPLE 489

Query: 871 SQSEVE 876
            Q  VE
Sbjct: 490 KQLAVE 495



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 99/180 (55%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ +L+  E +   + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KAKNPDLSGEEAANIGKTVGIGAVKYADLSKNRTSDYVFDWDSMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ + AG  + D        P+ L    E  LA  LL+  DVL  V      H+L  
Sbjct: 465  RVQSVFKKAGEWNAD-------APLQLNEPLEKQLAVELLKFEDVLQSVAETSYPHYLAA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++T FS FY+ C  ++  AEG ++     RL LA+ T  ++K+  ++L I T+  M
Sbjct: 518  YLYQVATLFSRFYEACPILK--AEGSVRNT---RLQLAKLTGGILKQGLELLGIETLEVM 572



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 20/130 (15%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGDFQ N  M   K       K+NP ++AQ++A+ ++         + VI+  E A PGF
Sbjct: 35  FGDFQINGVMGTAK-----QAKQNPRELAQTVAAALSG--------SSVIESAEVAGPGF 81

Query: 108 VNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           +N+ L   +  E ++  + +   GV+    ++   V++D+SSPN+A++      HL S I
Sbjct: 82  INLRLHADFLAENIQTALNDSRFGVKETAQSQT--VVIDYSSPNLAKE--MHVGHLRSSI 137

Query: 165 HDILISKAIA 174
               I++ +A
Sbjct: 138 IGDSIARVLA 147


>gi|383189663|ref|YP_005199791.1| arginyl-tRNA synthetase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
 gi|371587921|gb|AEX51651.1| arginyl-tRNA synthetase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
          Length = 577

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/411 (35%), Positives = 220/411 (53%), Gaps = 51/411 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQSLLSDKVSQALIAA----GASADSEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L+ + +KI++A PGF+N+FL   +    +   +   
Sbjct: 53  -MPPRQLAEKVVELL--------DLSGIANKIDIAGPGFINIFLDPAFVAAHVDSALNDE 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V+P T      +++D+S+PN+AKEMHVGH+RSTIIGD   R  E+LGH V+R N
Sbjct: 104 KLGITPVEPQT------IVIDYSAPNVAKEMHVGHIRSTIIGDAAVRTNEFLGHKVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       +ADL+ FY+ +KK +DEDE F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KVQNENAADMNLADLEEFYRAAKKNYDEDEAFAERARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D    + W  + DV+ +  Q  Y+RLNVTLTE    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCLQMWRKLVDVTMKQNQLTYNRLNVTLTEDDVMGESLYNSMLPGIVADLQAKG 276

Query: 496 LLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L    +G  +++ +   ++   PM ++  K DGG+ Y T+D+A  + R E   AD ++Y 
Sbjct: 277 LAVDSEGAVVVYLDEYKNKEGDPMGVIIRKKDGGYLYTTTDIACAKYRYETLGADRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
            D  Q  H  L++       TI+R   Y+   V   +H+      FGM++ 
Sbjct: 337 IDSRQ--HQHLMQAW-----TIARKAGYVPDSVALEHHM------FGMMLG 374



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/354 (39%), Positives = 187/354 (52%), Gaps = 53/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R  E+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTNEFLGHKVIRANHVGDWGTQFGMLIAYLE-KVQNENAADMNLADLEEFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KK +DEDE F +RA   VV LQ  D    + W  + DV+ +  Q  Y+RLNVTLTE 
Sbjct: 194 RAAKKNYDEDEAFAERARGYVVKLQGGDEYCLQMWRKLVDVTMKQNQLTYNRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNSMLPGIVADLQAKGLAVDSEGAVVVYLDEYKNKEGDPMGVIIRKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H       A+KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIARKAGYV-PDSVALEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   +    EL +   AV  G IK
Sbjct: 373 LGKDGKPFKTRSGGTVKLSDLLDEAIDRARKLITEKNPEMK-DAAELEKLVNAVGIGAIK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + A I+     +P
Sbjct: 432 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRADIDVNSLTQP 485



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 108/193 (55%), Gaps = 16/193 (8%)

Query: 934  LDKLKDKNRH--TELTP-----TELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
            LD+  D+ R   TE  P      EL +   AV  G IKYADLS +R  DY+F +D ML  
Sbjct: 394  LDEAIDRARKLITEKNPEMKDAAELEKLVNAVGIGAIKYADLSKSRTTDYIFDWDNMLAF 453

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
             GNTA Y+ YAYTR+ASI + A     D+ V + + PV L  E+E ALA  LL+  +VL 
Sbjct: 454  EGNTAPYMQYAYTRVASIFKRA-----DIDVNSLTQPVVLSEEREAALATRLLQFEEVLT 508

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            +V R+   H +C YLYD++  FS FY++C  +  + E    T    RL LA  T + +K 
Sbjct: 509  VVAREGTPHTMCAYLYDVAGLFSSFYEHCPILNAEDE----TSRNSRLKLALLTQRTLKT 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G    S A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQSLLSDKVSQALIAA----GASADSEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++         L+ + +KI+ A PGF+N+FL   +    +   +   
Sbjct: 53  -MPPRQLAEKVVELL--------DLSGIANKIDIAGPGFINIFLDPAFVAAHVDSALNDE 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V+P T      +++D+S+PN+A++
Sbjct: 104 KLGITPVEPQT------IVIDYSAPNVAKE 127


>gi|417957775|ref|ZP_12600694.1| arginine--tRNA ligase [Neisseria weaveri ATCC 51223]
 gi|343967839|gb|EGV36079.1| arginine--tRNA ligase [Neisseria weaveri ATCC 51223]
          Length = 578

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/328 (39%), Positives = 192/328 (58%), Gaps = 28/328 (8%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGDFQ N  M   K       K+NP ++AQ++A+ ++         + VI+  EVA PGF
Sbjct: 41  FGDFQINGVMGAAK-----QAKQNPRELAQTVAAALSG--------SSVIESAEVAGPGF 87

Query: 304 VNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIG 360
           +N+ L   +  E I+  + +   GV+    ++   V++D+SSPN+AKEMHVGHLRS+IIG
Sbjct: 88  INLRLHADFLAENIQTALNDSRFGVKETAQSQT--VVIDYSSPNLAKEMHVGHLRSSIIG 145

Query: 361 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK 420
           D+I+R+L Y+GH VV  NHVGDWGTQFGML+A++ ++          +ADL+ FY+ +K 
Sbjct: 146 DSIARVLAYMGHRVVAQNHVGDWGTQFGMLVAYMVEQ--QKADAEFKLADLEQFYRNAKV 203

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GE 477
           RFDEDE F   + + VV LQ  D      W+   ++S    Q +YD L + LT     GE
Sbjct: 204 RFDEDEAFADTSREYVVKLQGGDEAVLALWKQFVEISLSHAQNVYDTLGLKLTPEDVAGE 263

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDL 532
           S Y   ++ ++  L +KGL   DDG K+++ ++     G     IV K  GGF Y ++DL
Sbjct: 264 SMYNDDLQPVIDELSEKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKKGGGFLYSSTDL 323

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           A +R R+    AD ++YV D  Q +HF+
Sbjct: 324 ACVRYRVGRLNADRLLYVVDARQALHFQ 351



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 191/366 (52%), Gaps = 59/366 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+I+R+L Y+GH VV  NHVGDWGTQFGML+A++ ++          +ADL+ FY
Sbjct: 141 SSIIGDSIARVLAYMGHRVVAQNHVGDWGTQFGMLVAYMVEQ--QKADAEFKLADLEQFY 198

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDEDE F   + + VV LQ  D      W+   ++S    Q +YD L + LT  
Sbjct: 199 RNAKVRFDEDEAFADTSREYVVKLQGGDEAVLALWKQFVEISLSHAQNVYDTLGLKLTPE 258

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   ++ ++  L +KG                           + KK G    
Sbjct: 259 DVAGESMYNDDLQPVIDELSEKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKKGGGFLY 318

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++YV D  Q +HF+ +   A+KAG L P +   + + FG +
Sbjct: 319 SSTDLACVRYRVGRLNADRLLYVVDARQALHFQQMFTVARKAGWL-PEQVAAEHIAFGTM 377

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL ELLDE   R+   +K KN   +L+  E +   + V  G +K
Sbjct: 378 MGKDGKPFKTRSGDTVKLVELLDEAQERATALVKAKN--PDLSGEEAANIGKTVGIGAVK 435

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP----EPDP 870
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ + AG  + D P    EP  
Sbjct: 436 YADLSKNRTSDYVFDWDSMLSFEGNTAPYLQYAYTRVQSVFKKAGEWNADAPLQLNEPLE 495

Query: 871 SQSEVE 876
            Q  VE
Sbjct: 496 KQLAVE 501



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 99/180 (55%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ +L+  E +   + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 411  KAKNPDLSGEEAANIGKTVGIGAVKYADLSKNRTSDYVFDWDSMLSFEGNTAPYLQYAYT 470

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ + AG  + D        P+ L    E  LA  LL+  DVL  V      H+L  
Sbjct: 471  RVQSVFKKAGEWNAD-------APLQLNEPLEKQLAVELLKFEDVLQSVAETSYPHYLAA 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++T FS FY+ C  ++  AEG ++     RL LA+ T  ++K+  ++L I T+  M
Sbjct: 524  YLYQVATLFSRFYEACPILK--AEGGVRNT---RLQLAKLTGGILKQGLELLGIETLEVM 578



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 20/130 (15%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGDFQ N  M   K       K+NP ++AQ++A+ ++         + VI+  E A PGF
Sbjct: 41  FGDFQINGVMGAAK-----QAKQNPRELAQTVAAALSG--------SSVIESAEVAGPGF 87

Query: 108 VNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           +N+ L   +  E ++  + +   GV+    ++   V++D+SSPN+A++      HL S I
Sbjct: 88  INLRLHADFLAENIQTALNDSRFGVKETAQSQT--VVIDYSSPNLAKE--MHVGHLRSSI 143

Query: 165 HDILISKAIA 174
               I++ +A
Sbjct: 144 IGDSIARVLA 153


>gi|399000690|ref|ZP_10703413.1| arginyl-tRNA synthetase [Pseudomonas sp. GM18]
 gi|398129362|gb|EJM18731.1| arginyl-tRNA synthetase [Pseudomonas sp. GM18]
          Length = 578

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 155/407 (38%), Positives = 220/407 (54%), Gaps = 49/407 (12%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V ++ +K     GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQAITQLVNEGVLPEGLSPAIQVENSRDK---THGDFASNIAMMLAK---PAGM 57

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQIK 318
           K  P D+A+ I + + ++        + + K E+A PGF+N F       +R+ A     
Sbjct: 58  K--PRDLAEKIIAALPAD--------ENVSKTEIAGPGFLNFFQNTQALATRLDAALADD 107

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            I V    P       R +VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG  V+R N
Sbjct: 108 HIGVRKAGPVQ-----RTVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDTVIRQN 162

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY+ +K+RFDE E F  RA   VV 
Sbjct: 163 HVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFYRAAKQRFDESEEFADRARGLVVK 218

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  DPD    W    D+S    QKIY+ LNV LT     GES Y   +  +V  L+ KG
Sbjct: 219 LQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMADVMGESAYNDDLINVVNDLKAKG 278

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           +L   +G + ++       D   +P+ IVK+DGG+ Y T+DLAA+R R    KAD  +Y 
Sbjct: 279 MLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLYATTDLAAVRYRSGVLKADRALYF 338

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            D  Q +HF+ + +       ++RL  ++ H  + + H+G +GT  G
Sbjct: 339 VDQRQALHFQQVFQ-------VARLAGFVTHP-MEMEHMG-FGTMNG 376



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 184/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDTVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE E F  RA   VV LQ  DPD    W    D+S    QKIY+ LNV LT  
Sbjct: 196 RAAKQRFDESEEFADRARGLVVKLQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLINVVNDLKAKGMLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLY 315

Query: 707 ------SLTKKLGI------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                 ++  + G+      +Y  D  Q +HF+ + + A+ AG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGVLKADRALYFVDQRQALHFQQVFQVARLAGFVT-HPMEMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN   EL   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAQERAYTLVKEKN--PELAEDELRNIAKVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  112 bits (281), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   EL    + V  G +KYADLS +R  DY F+FD ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPELAEDELRNIAKVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G +  ++        + LE   E  LA  L +  ++L  V+     H LC 
Sbjct: 468  RVAGVFRKLGKDFSEVE-----GQIVLEAPHEHELAAKLAQFGEILNNVSDKGTPHILCT 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  D   ++++    RL LA  T + +K+
Sbjct: 523  YLYDVAGLFSSFYENCPILSADTPTQMQS----RLRLAALTGRTLKQ 565


>gi|374314181|ref|YP_005060610.1| arginyl-tRNA synthetase [Serratia symbiotica str. 'Cinara cedri']
 gi|363988407|gb|AEW44598.1| arginyl-tRNA synthetase [Serratia symbiotica str. 'Cinara cedri']
          Length = 576

 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/409 (35%), Positives = 229/409 (55%), Gaps = 47/409 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++ +LS+ F  A+  A    G  T   A  ++    +FG +Q N  +++ K      +
Sbjct: 1   MNIQVFLSNKFHQALIAA----GAPTDCKAQVHQSAKEQFGHYQVNGVISIAK------Q 50

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
            + P    Q +A  V  +L    ++  +  KIE+A  GF+N+F++  +    I  I+   
Sbjct: 51  LRIP---PQQLAEKVLQQL----NIGDIASKIEIASHGFINIFINNKWLARHIDYIL--- 100

Query: 325 VQPPTLN----KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
              P L     K   +++D+S+PN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHV
Sbjct: 101 -SAPKLGLMKVKPQTIVIDYSAPNLAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRTNHV 159

Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
           GDWGTQFGMLIA+L D   + ++    ++D++ FY+++KK +DED  F ++A + VV LQ
Sbjct: 160 GDWGTQFGMLIAYL-DIIQNDISNEIVLSDMEEFYRKAKKYYDEDSEFAEKARKYVVKLQ 218

Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLL 497
             D   K  W  + +++    Q IY+RLNVTLTE    GES+Y   +  +V  L+ KGL 
Sbjct: 219 SGDNYCKAMWRKLVNITIAHNQIIYNRLNVTLTENDVIGESYYNAMLPGIVADLKAKGLA 278

Query: 498 ELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
              +G  +++    +++   PM IV  K DGG+ Y T+D+A  + R E   AD I+Y TD
Sbjct: 279 VESEGATVVFLDAYQNKKGNPMGIVVQKKDGGYLYTTTDIACAKYRYETLGADRILYYTD 338

Query: 553 LGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
             Q  H  L++       +I+R   YL   V   +H+      FGM++ 
Sbjct: 339 SRQ--HQHLMQAW-----SIARKAGYLPEHVSLEHHL------FGMILG 374



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/354 (38%), Positives = 195/354 (55%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L D   + ++    ++D++ FY
Sbjct: 135 STIIGDAVARTLEFLGHNVIRTNHVGDWGTQFGMLIAYL-DIIQNDISNEIVLSDMEEFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +++KK +DED  F ++A + VV LQ  D   K  W  + +++    Q IY+RLNVTLTE 
Sbjct: 194 RKAKKYYDEDSEFAEKARKYVVKLQSGDNYCKAMWRKLVNITIAHNQIIYNRLNVTLTEN 253

Query: 685 ---GESFYQKHMEQLV---------------------PYLEKKGN---LSLTKKLG---- 713
              GES+Y   +  +V                      Y  KKGN   + + KK G    
Sbjct: 254 DVIGESYYNAMLPGIVADLKAKGLAVESEGATVVFLDAYQNKKGNPMGIVVQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              I+Y TD  Q  H       A+KAG L P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLGADRILYYTDSRQHQHLMQAWSIARKAGYL-PEHVSLEHHLFGMI 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG++ K FKTR G TVKLS+LLDE + R+   + +KN   ++   E+++  + V  G +K
Sbjct: 373 LGQNGKPFKTRDGGTVKLSDLLDEAIARAKKLIINKN--PKMPIEEITQVARVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DY+F +DKML   GNTA Y+ YAYTRI SI + + I+      P
Sbjct: 431 YADLSKHRATDYIFDWDKMLVFTGNTAPYIQYAYTRILSIFKHSKIDENSLILP 484



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 102/179 (56%), Gaps = 9/179 (5%)

Query: 941  NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
            N++ ++   E+++  + V  G +KYADLS +R  DY+F +DKML   GNTA Y+ YAYTR
Sbjct: 407  NKNPKMPIEEITQVARVVGIGAVKYADLSKHRATDYIFDWDKMLVFTGNTAPYIQYAYTR 466

Query: 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
            I SI + + I+   L +     P+ +  + E ALA  +L+  + L  VTRD   H +C Y
Sbjct: 467  ILSIFKHSKIDENSLIL-----PLVIHDKHEIALAIRMLQFEEALHAVTRDGTPHIMCSY 521

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            LYD++  FS FY +C  +    E     V   RL L+  T++++K   + L I TV +M
Sbjct: 522  LYDLAGIFSSFYQHCQILNTHNE----IVQQSRLKLSLLTSRILKTGLNTLGIETVERM 576



 Score = 46.2 bits (108), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 25/148 (16%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++ +LS+ F  A+  A    G  T   A  ++    +FG +Q N  +++ K      +
Sbjct: 1   MNIQVFLSNKFHQALIAA----GAPTDCKAQVHQSAKEQFGHYQVNGVISIAK------Q 50

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
            + P    Q +A  V  +L    ++  +  KIE A  GF+N+F++  +    +  I+   
Sbjct: 51  LRIP---PQQLAEKVLQQL----NIGDIASKIEIASHGFINIFINNKWLARHIDYIL--- 100

Query: 129 VQPPTLN----KKLRVLVDFSSPNIARK 152
              P L     K   +++D+S+PN+A++
Sbjct: 101 -SAPKLGLMKVKPQTIVIDYSAPNLAKE 127


>gi|419958419|ref|ZP_14474483.1| arginyl-tRNA ligase [Enterobacter cloacae subsp. cloacae GS1]
 gi|388606677|gb|EIM35883.1| arginyl-tRNA ligase [Enterobacter cloacae subsp. cloacae GS1]
          Length = 577

 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 191/337 (56%), Gaps = 30/337 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MPPRQLAEQVL--------THLDLTGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +    +   + +   GV  P       V+VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLASHVDAALKSDRLGVAQPEAQT---VVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  DP + + W  + D++    Q  Y+RLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDPYFLEMWRKLVDITMSQNQLTYNRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ K L    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKNLAVESEGATVVFLDEYKNKEGEPMGVIVQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTII 568
           +A  + R E   AD ++Y  D  Q  H  L++  TI+
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV 352



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/347 (39%), Positives = 185/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  DP + + W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDPYFLEMWRKLVDITMSQNQLTYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKK----------------------------------GNLS 707
              GES Y   +  +V  L+ K                                  G L 
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKNLAVESEGATVVFLDEYKNKEGEPMGVIVQKKDGGYLY 313

Query: 708 LTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T  +              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKLS+LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLSDLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKANID 477



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 108/191 (56%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I   D  V A +T VS+  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKANI---DESVLANAT-VSITEDREAQLAARLLQFEETLSVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             RD   H +C YLYD++  FS FY++C  +  + E     V   RL LA+ TAK +K   
Sbjct: 511  ARDGTPHVMCAYLYDLAGLFSGFYEHCPILSAENEA----VRHSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 48.1 bits (113), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MPPRQLAEQVL--------THLDLTGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +    +   + +   GV  P       V+VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLASHVDAALKSDRLGVAQPEAQT---VVVDYSAPNVAKE 127


>gi|52425385|ref|YP_088522.1| arginyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|81386992|sp|Q65SX3.1|SYR_MANSM RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|52307437|gb|AAU37937.1| ArgS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 576

 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/330 (39%), Positives = 194/330 (58%), Gaps = 30/330 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ +   V         L+ + +K E+A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----LNPREFAQKVLEQV--------DLSDIAEKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKL----RVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N+FL++ +  +Q  D  +N    P    K      V++D+SSPN+AKEMHVGHLRSTI
Sbjct: 82  FINIFLNKNWVAQQ-ADTALN---TPNFGIKTAHPQTVVIDYSSPNVAKEMHVGHLRSTI 137

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD ++R LE++G+ V+R NHVGDWGTQFGMLIA+L+ K  +    +  ++DL+AFY+ +
Sbjct: 138 IGDAVARALEFMGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHADAMQLSDLEAFYRAA 196

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER--- 475
           K+ +D DE F  +A   VV LQ  D   +  W+ + D++ +  Q+ Y+RLNVTLTE+   
Sbjct: 197 KETYDNDEEFAVKARSYVVKLQSGDEYCRTMWKKLVDMTMQQNQRNYERLNVTLTEKDVM 256

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTS 530
           GES Y   +  +V  L+K+GL   DDG  +++ +   ++   PM ++  K DGGF Y T+
Sbjct: 257 GESLYNPMLPAIVEDLKKQGLAVEDDGALVVYLDEFKNKDGDPMGVIVQKKDGGFLYTTT 316

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           D+AA + R     AD  +  +D  Q  H +
Sbjct: 317 DIAAAKYRYHTLHADRALVFSDTRQSQHMQ 346



 Score =  219 bits (559), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 190/347 (54%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R LE++G+ V+R NHVGDWGTQFGMLIA+L+ K  +    +  ++DL+AFY
Sbjct: 135 STIIGDAVARALEFMGNHVIRANHVGDWGTQFGMLIAYLE-KMENEHADAMQLSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+ +D DE F  +A   VV LQ  D   +  W+ + D++ +  Q+ Y+RLNVTLTE+
Sbjct: 194 RAAKETYDNDEEFAVKARSYVVKLQSGDEYCRTMWKKLVDMTMQQNQRNYERLNVTLTEK 253

Query: 685 ---GESFYQKHMEQLVPYLEKK-------------------------GNLSLTKKLGIVY 716
              GES Y   +  +V  L+K+                         G +   K  G +Y
Sbjct: 254 DVMGESLYNPMLPAIVEDLKKQGLAVEDDGALVVYLDEFKNKDGDPMGVIVQKKDGGFLY 313

Query: 717 VT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T                      D  Q  H +      +KAG + P+   ++   FG++
Sbjct: 314 TTTDIAAAKYRYHTLHADRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLEHHNFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TVKL++LLDE + R+   + +KN  T L+  E +   +AVA G +K
Sbjct: 373 LGKDGKPFKTRSGGTVKLADLLDEAVERATLLINEKN--TALSEQEKAAVIEAVAIGSVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF +D ML   GNTA Y+ YAYTRI SI     +N
Sbjct: 431 YADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTDVN 477



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 105/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++T L+  E +   +AVA G +KYADLS NR  DYVF +D ML   GNTA Y+ YAYTRI
Sbjct: 408  KNTALSEQEKAAVIEAVAIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI     +N   L  A     + + ++KE ALA  LL+  + +  V +D   H LC YL
Sbjct: 468  RSIFNKTDVNPTALSAA----HIEIRNDKERALAIKLLQFEEAVQTVAKDGTPHILCNYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  FS FY++C  +  +AE  +K     RL LA+ T K +K+  D+L I+TV KM
Sbjct: 524  YELAGVFSSFYEHCPIL--NAEEPVK---LSRLKLAKLTEKTLKQGLDLLGIKTVEKM 576



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 23/131 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ +   V         L+ + +K E A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----LNPREFAQKVLEQV--------DLSDIAEKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKL----RVLVDFSSPNIARKGGFLYPHLPS 162
           F+N+FL++ +  +Q  D  +N    P    K      V++D+SSPN+A++      HL S
Sbjct: 82  FINIFLNKNWVAQQ-ADTALN---TPNFGIKTAHPQTVVIDYSSPNVAKE--MHVGHLRS 135

Query: 163 QIHDILISKAI 173
            I    +++A+
Sbjct: 136 TIIGDAVARAL 146


>gi|395496178|ref|ZP_10427757.1| arginyl-tRNA ligase [Pseudomonas sp. PAMC 25886]
          Length = 578

 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 158/407 (38%), Positives = 220/407 (54%), Gaps = 49/407 (12%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V +T +K     GDF  N AM L K    K  
Sbjct: 4   TIRQLIQQALTQLVNEGVLPEGLTPAIQVENTRDK---THGDFASNIAMMLAKPAGLK-- 58

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQIK 318
              P D+A+ I     + L  +P     + K E+A PGF+N F       SR+ A     
Sbjct: 59  ---PRDLAEKI----IAALPADPQ----VTKAEIAGPGFINFFQNTQALASRLDAALADA 107

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            I V    P       RV +D S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG DV+R N
Sbjct: 108 KIGVRKAGPVQ-----RVAIDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDDVIRQN 162

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY+ +KKRFDE E F  RA   VV 
Sbjct: 163 HVGDWGTQFGMLMAYLQEN-P---ITSNELSDLENFYRAAKKRFDESEEFADRARGLVVK 218

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D +  + W    ++S    Q+IY+ LNV LT     GES Y   +  +V  L+ KG
Sbjct: 219 LQAGDAECLELWGRFREISLSHCQEIYELLNVKLTMADVMGESAYNDDLINVVNDLKAKG 278

Query: 496 LLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           LL   +G + ++ E     D   +P+ IVK+DGG+ Y T+DLAA+R R    KAD  +Y 
Sbjct: 279 LLVESNGAQCVFLEEFKTADGDPLPVIIVKADGGYLYATTDLAAVRYRSGVLKADRALYF 338

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            D  Q +HF+ + E       ++R   ++ H  +++ H+G +GT  G
Sbjct: 339 VDQRQALHFQQVFE-------VARRAGFVTHP-MQMEHMG-FGTMNG 376



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/362 (38%), Positives = 193/362 (53%), Gaps = 66/362 (18%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG DV+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDDVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSNELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  D +  + W    ++S    Q+IY+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFADRARGLVVKLQAGDAECLELWGRFREISLSHCQEIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLINVVNDLKAKGLLVESNGAQCVFLEEFKTADGDPLPVIIVKADGGYLY 315

Query: 707 ------SLTKKLGIV------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                 ++  + G++      Y  D  Q +HF+ + E A++AG +  +  +M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGVLKADRALYFVDQRQALHFQQVFEVARRAGFVT-HPMQMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+ + +K+KN   EL   +L    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAQDRAYNLVKEKN--PELAEADLRNIARVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG---------INSEDP 865
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G         IN E P
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLGKDFSEVEGQINLEAP 492

Query: 866 PE 867
            E
Sbjct: 493 HE 494



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 96/175 (54%), Gaps = 11/175 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+ + +K+KN   EL   +L    + V  G +KYADLS +R  DY F+F+ ML+  GNTA
Sbjct: 402  RAYNLVKEKN--PELAEADLRNIARVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTA 459

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A + R  G +  ++        ++LE   E  LA  L +  +VL  V   
Sbjct: 460  PYLLYAYTRVAGVFRKLGKDFSEV-----EGQINLEAPHEQELAAKLAQFGEVLNSVGEK 514

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
               H LC YLY+++  FS FY+NC  +  D E + ++    RL LA    + +K+
Sbjct: 515  GTPHILCTYLYEVAGLFSSFYENCPILTADDEAQKQS----RLRLAALAGRTLKQ 565


>gi|261379756|ref|ZP_05984329.1| arginine--tRNA ligase [Neisseria subflava NJ9703]
 gi|284797434|gb|EFC52781.1| arginine--tRNA ligase [Neisseria subflava NJ9703]
          Length = 637

 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 148/364 (40%), Positives = 205/364 (56%), Gaps = 37/364 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDFQ N  M   K       K+NP ++AQ +A V    LA N     VI+  EVA PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEV----LADNA----VIESAEVAGPGFI 82

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N+ L   +  + I+  + +   GV     +K   V++D+SSPN+AKEMHVGHLRS+IIGD
Sbjct: 83  NLRLRPEFLAQNIQTALNDARFGV--AKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGD 140

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
           +ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K R
Sbjct: 141 SISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRAAKVR 198

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GES 478
           FDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L      GES
Sbjct: 199 FDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGES 258

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDLA 533
            Y   ++ +V  L +KGL   DDG K+++ ++     G     IV K  GGF Y ++DLA
Sbjct: 259 TYNNDLQPVVDDLAQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLA 318

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
            +R R+    AD ++YV D  Q +HF  L        T SR   YL  D V+   +G +G
Sbjct: 319 CLRYRVGTLHADRLLYVVDHRQALHFEQLF-------TTSRKAGYLPED-VKAEFIG-FG 369

Query: 594 TQFG 597
           T  G
Sbjct: 370 TMMG 373



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/408 (34%), Positives = 193/408 (47%), Gaps = 116/408 (28%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L   
Sbjct: 193 RAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLG----- 713
              GES Y   ++ +V  L +KG                          + +K G     
Sbjct: 253 DVAGESTYNNDLQPVVDDLAQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLY 312

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++YV D  Q +HF  L   ++KAG L P   + +F+GFG +
Sbjct: 313 ASTDLACLRYRVGTLHADRLLYVVDHRQALHFEQLFTTSRKAGYL-PEDVKAEFIGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRS-----------------------------LD 785
           +G+D K FKTRSGDTVKL +LLDE + R+                              D
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLDEAINRAEQVVKEKNPKWQLTTELEDGLKKISSLTNSD 431

Query: 786 KLKDKNRHT-------------------------------ELTPTELSEAQQ---AVAYG 811
            LK+K ++                                E T T LS+A++    V  G
Sbjct: 432 NLKNKLKYNLENKKLEITLENDVVYHLPIDKIDKIVRGAEEYTDTALSDAEKIARVVGIG 491

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
            +KYADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 492 AVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAG 539



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 94/178 (52%), Gaps = 15/178 (8%)

Query: 945  ELTPTELSEAQQ---AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            E T T LS+A++    V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYTR+
Sbjct: 472  EYTDTALSDAEKIARVVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRV 531

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AG           + P  L    E  LA  LL+  DVL  V      H+L  YL
Sbjct: 532  QSVFRKAGEWD-------ATAPTVLTEPLEKQLAAELLKFEDVLQSVADTAYPHYLAAYL 584

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y I+T FS FY+ C  ++  +EG  +     RL LA+ T   +K+  ++L I  +  M
Sbjct: 585  YQIATLFSRFYEACPILK--SEGATR---NSRLQLAKLTGDTLKQGLELLGIDVLDVM 637



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 20/128 (15%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDFQ N  M   K       K+NP ++AQ +A V    LA N     VI+  E A PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEV----LADNA----VIESAEVAGPGFI 82

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIH 165
           N+ L   +  + ++  + +   GV     +K   V++D+SSPN+A++      HL S I 
Sbjct: 83  NLRLRPEFLAQNIQTALNDARFGV--AKTDKPQTVVIDYSSPNLAKE--MHVGHLRSSII 138

Query: 166 DILISKAI 173
              IS+ +
Sbjct: 139 GDSISRVL 146


>gi|302870428|ref|YP_003839065.1| arginyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302573287|gb|ADL49489.1| arginyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 572

 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/328 (39%), Positives = 186/328 (56%), Gaps = 26/328 (7%)

Query: 246 DFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVN 305
           DFQ + A+ L +        + P +IA        +E+    +LA V   +EV+ PGF+N
Sbjct: 34  DFQSDAALGLARRLG-----RPPREIA--------AEVRERAALADVCAAVEVSGPGFLN 80

Query: 306 VFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           + ++    G  +  +  +   GV  P + +   V+VD+S PN+AKEMHVGHLRST+IGD 
Sbjct: 81  LTVAGHALGGLVSALAADPRLGV--PVVAEPETVVVDYSGPNVAKEMHVGHLRSTVIGDA 138

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
            +R LE+LGH V+R NH+GDWGT FGMLI HL D       +   + DL  FYK ++++F
Sbjct: 139 AARTLEWLGHRVLRANHLGDWGTPFGMLIEHLLDLGEAGAAQELSMGDLDGFYKAAREKF 198

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           D+DE F++R+ Q VVALQ  DP   + W ++   S   F  +YD L+VTLT    RGES 
Sbjct: 199 DDDEAFRERSRQRVVALQGGDPATLRLWRLLVTQSEGYFLTVYDLLDVTLTGDDFRGESS 258

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +   V  L++ GLL   DG   ++     G D   +P+ + KSDGG+ Y  +DLAA
Sbjct: 259 YHDQLAPTVEELDRLGLLRRSDGADCVFPPGSVGRDGEPLPLIVRKSDGGYGYPATDLAA 318

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           +R R     A  ++YV  L Q  HF ++
Sbjct: 319 LRHRTGALGATRLLYVVGLPQRRHFEMV 346



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 195/368 (52%), Gaps = 61/368 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD  +R LE+LGH V+R NH+GDWGT FGMLI HL D       +   + DL  FY
Sbjct: 132 STVIGDAAARTLEWLGHRVLRANHLGDWGTPFGMLIEHLLDLGEAGAAQELSMGDLDGFY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           K ++++FD+DE F++R+ Q VVALQ  DP   + W ++   S   F  +YD L+VTLT  
Sbjct: 192 KAAREKFDDDEAFRERSRQRVVALQGGDPATLRLWRLLVTQSEGYFLTVYDLLDVTLTGD 251

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSL--------------------------------- 708
             RGES Y    +QL P +E+   L L                                 
Sbjct: 252 DFRGESSYH---DQLAPTVEELDRLGLLRRSDGADCVFPPGSVGRDGEPLPLIVRKSDGG 308

Query: 709 --------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                         T  LG   ++YV  L Q  HF ++   A +AG L     R + VGF
Sbjct: 309 YGYPATDLAALRHRTGALGATRLLYVVGLPQRRHFEMVFAVAAQAGWLT-APARAEHVGF 367

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYG 811
           G +LG D +  ++R+G +VKL+ LL E ++R+    +++N   EL  +E +E  +AV  G
Sbjct: 368 GSILGPDGRMLRSRAGGSVKLAGLLTEAVQRATALARERN--PELGESEAAEVGRAVGVG 425

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPS 871
            IKYADLS +R+ DYV  +++ML   GNTA YL YAY+R+ SI R AG  +   P+ + S
Sbjct: 426 AIKYADLSGDRHKDYVLDWERMLSLDGNTAPYLQYAYSRVRSIFRRAGAAAR--PDAEVS 483

Query: 872 QSEVEDRC 879
            +E  +R 
Sbjct: 484 LAEPAERA 491



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 11/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + R+ EL  +E +E  +AV  G IKYADLS +R+ DYV  +++ML   GNTA YL YAY+
Sbjct: 404  RERNPELGESEAAEVGRAVGVGAIKYADLSGDRHKDYVLDWERMLSLDGNTAPYLQYAYS 463

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ SI R AG        A     VSL    E ALA  L+    V+  V   L  H L  
Sbjct: 464  RVRSIFRRAGA------AARPDAEVSLAEPAERALAMELVGFAAVVEEVAGGLEFHRLTA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL+ ++ AFS FY+ C  +   AEG ++     RL+L + T +V+++  ++L IRT  ++
Sbjct: 518  YLHRLAVAFSAFYERCPVLR--AEGPVR---ESRLVLCDLTGRVLRQGLNLLGIRTPERL 572


>gi|407366933|ref|ZP_11113465.1| arginyl-tRNA ligase [Pseudomonas mandelii JR-1]
          Length = 578

 Score =  227 bits (579), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 148/370 (40%), Positives = 204/370 (55%), Gaps = 40/370 (10%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V ++ +K   K GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQAITQLVNEGVLPEGLSPAIQVENSRDK---KNGDFASNIAMMLAK---PAGM 57

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQIK 318
           K  P D+A+ I + + ++        + + K E+A PGF+N F       +R+ A     
Sbjct: 58  K--PRDLAEKIIAALPAD--------ENVTKTEIAGPGFLNFFQNTDALATRLDAALADD 107

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            I V    P       R +VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG DV+R N
Sbjct: 108 HIGVRKAGPVQ-----RTVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDDVIRQN 162

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY+ +K+RFDE E F  RA   VV 
Sbjct: 163 HVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFYRAAKQRFDESEEFADRARGLVVK 218

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  DPD    W    D+S    QKIY+ LNV LT     GES Y   +  +V  L+  G
Sbjct: 219 LQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMADVMGESAYNDDLINVVNDLKAAG 278

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           +L   +G + ++       D   +P+ IVK+DGG+ Y T+DLAA+R R  + KAD  +Y 
Sbjct: 279 MLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLYATTDLAAVRYRSGKLKADRALYF 338

Query: 551 TDLGQGVHFR 560
            D  Q +HF+
Sbjct: 339 VDQRQALHFQ 348



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/345 (40%), Positives = 183/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG DV+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDDVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE E F  RA   VV LQ  DPD    W    D+S    QKIY+ LNV LT  
Sbjct: 196 RAAKQRFDESEEFADRARGLVVKLQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
              GES Y   +  +V  L+  G L  +     V++                        
Sbjct: 256 DVMGESAYNDDLINVVNDLKAAGMLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLY 315

Query: 718 --TDLG---------------------QGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
             TDL                      Q +HF+ +   A+KAG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGKLKADRALYFVDQRQALHFQQVFAVARKAGFVT-HPMEMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +KDKN   EL   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAQERAYTLVKDKN--PELAENELRNIARVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 95/175 (54%), Gaps = 11/175 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   +KDKN   EL   EL    + V  G +KYADLS +R  DY F+FD ML+  GNTA
Sbjct: 402  RAYTLVKDKN--PELAENELRNIARVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTA 459

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A + R  G +  ++        + LE   E  LA  L +  +VL  V   
Sbjct: 460  PYLLYAYTRVAGVFRKLGKDFSEVE-----GQIVLEAAHEHELAAKLAQFGEVLNNVCEK 514

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
               H LC YLYD++  FS FY+NC  +  D   ++++    RL LA  T + +K+
Sbjct: 515  GTPHILCTYLYDVAGLFSSFYENCPILSADTPAQMQS----RLRLAALTGRTLKQ 565


>gi|442609080|ref|ZP_21023821.1| Arginyl-tRNA synthetase [Pseudoalteromonas luteoviolacea B = ATCC
           29581]
 gi|441749692|emb|CCQ09883.1| Arginyl-tRNA synthetase [Pseudoalteromonas luteoviolacea B = ATCC
           29581]
          Length = 580

 Score =  227 bits (579), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/337 (39%), Positives = 191/337 (56%), Gaps = 35/337 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N AM   K  K      NP ++AQ I          N  +A + +K+E+A PG
Sbjct: 35  QFGDYQINGAMGAAKALK-----TNPRELAQKIID--------NLDVADLAEKVEIAGPG 81

Query: 303 FVNVFL------SRVYAGEQ-IKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLR 355
           F+N+ L      +R+   EQ +K  + +  +P       +V+VDFSSPN+AKEMHVGHLR
Sbjct: 82  FINIHLKPEFLANRLMTAEQDVKLGVASHAKPQ------KVVVDFSSPNLAKEMHVGHLR 135

Query: 356 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 414
           STIIGD + R LE+ G  V+R NH+GDWGTQFGMLIAHL+D     +  +   +ADL+ F
Sbjct: 136 STIIGDAVVRALEFRGDTVIRQNHMGDWGTQFGMLIAHLEDLLNQGVDLEKVALADLETF 195

Query: 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 474
           Y+++KKRFD++E F  +A   VV LQ  D    K W++  D S +  +++Y +LNVTL  
Sbjct: 196 YRDAKKRFDDEEGFADKARDYVVKLQGGDAHCAKLWQLFIDTSVKHSEEVYGKLNVTLKR 255

Query: 475 ---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFT 526
                ES Y   +  ++  L+ KGL   D G ++++      +D       + KS GGF 
Sbjct: 256 DDIMAESAYNDALAGVITTLQAKGLAVEDQGAQVVFLDELANKDGEPSAFIVQKSGGGFL 315

Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
           Y T+DLAA   R  +  AD I+   D  Q +HF  +E
Sbjct: 316 YATTDLAACDYRSNQLGADRILIFVDARQSLHFSQVE 352



 Score =  219 bits (558), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 131/351 (37%), Positives = 192/351 (54%), Gaps = 54/351 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAF 623
           STIIGD + R LE+ G  V+R NH+GDWGTQFGMLIAHL+D     +  +   +ADL+ F
Sbjct: 136 STIIGDAVVRALEFRGDTVIRQNHMGDWGTQFGMLIAHLEDLLNQGVDLEKVALADLETF 195

Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
           Y+++KKRFD++E F  +A   VV LQ  D    K W++  D S +  +++Y +LNVTL  
Sbjct: 196 YRDAKKRFDDEEGFADKARDYVVKLQGGDAHCAKLWQLFIDTSVKHSEEVYGKLNVTLKR 255

Query: 684 ---RGESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLG---- 713
                ES Y   +  ++  L+ KG                       +  + +K G    
Sbjct: 256 DDIMAESAYNDALAGVITTLQAKGLAVEDQGAQVVFLDELANKDGEPSAFIVQKSGGGFL 315

Query: 714 --------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                               I+   D  Q +HF  +E  A+KAG L  ++T  +F  FG 
Sbjct: 316 YATTDLAACDYRSNQLGADRILIFVDARQSLHFSQVELTARKAGFLR-DETSYEFCPFGT 374

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           ++G+D K FKTR+G TVKL++LL+E + R+ +KL    R ++L+    +E  + V  G +
Sbjct: 375 MMGDDGKPFKTRTGGTVKLADLLEEAIGRATEKLA--ARESDLSAEARAEIARKVGIGAV 432

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           KYADLS +R  DY+F++D ML   G TA YL YAYTR++SI R A ++S +
Sbjct: 433 KYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRVSSIFRKANVDSSN 483



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 107/188 (56%), Gaps = 10/188 (5%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+ +KL    R ++L+    +E  + V  G +KYADLS +R  DY+F++D ML   G TA
Sbjct: 403  RATEKLA--ARESDLSAEARAEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATA 460

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YL YAYTR++SI R A ++S +L  A     + ++  +E ALA  LL++ +VL L+  +
Sbjct: 461  PYLQYAYTRVSSIFRKANVDSSNLVGA-----IVIDEAQEKALALKLLQLEEVLDLMISE 515

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
               H LC YLY++++ +  FY+ C  +++D     K     RL+L    AK +    D+L
Sbjct: 516  ATPHVLCGYLYELASLYMSFYEACPILKEDVA---KETRESRLILCNLVAKTLATGLDLL 572

Query: 1112 NIRTVHKM 1119
             I  + +M
Sbjct: 573  GIEVMEQM 580



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 26/124 (20%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N AM   K  K      NP ++AQ I          N  +A + +K+E A PG
Sbjct: 35  QFGDYQINGAMGAAKALK-----TNPRELAQKIID--------NLDVADLAEKVEIAGPG 81

Query: 107 FVNVFL------SRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+ L      +R+   EQ   + V     P      +V+VDFSSPN+A++      HL
Sbjct: 82  FINIHLKPEFLANRLMTAEQDVKLGVASHAKPQ-----KVVVDFSSPNLAKE--MHVGHL 134

Query: 161 PSQI 164
            S I
Sbjct: 135 RSTI 138


>gi|440757567|ref|ZP_20936751.1| Arginyl-tRNA synthetase [Pantoea agglomerans 299R]
 gi|436428690|gb|ELP26343.1| Arginyl-tRNA synthetase [Pantoea agglomerans 299R]
          Length = 576

 Score =  227 bits (579), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 146/399 (36%), Positives = 220/399 (55%), Gaps = 44/399 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAEAVIQ--------HLDLTGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +     +  +     GVQ   L +   ++VD+S+PN+AKEMHVGH+RSTII
Sbjct: 82  FINIFLDHNWLATHARQALSLPRLGVQ---LAEPQTIVVDYSAPNVAKEMHVGHVRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ K  +       +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAFLE-KQQNEDHAEMALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
           + +DED  F +RA   VV LQ  D   ++ W+ + D++    QKIYDR+NVTLT     G
Sbjct: 198 RTYDEDPEFAERARSYVVKLQGGDEYCRQMWKKLVDITMSQNQKIYDRMNVTLTRNDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L++KGL    +G  +++    +++   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNDMLPGIVSDLKQKGLAVESEGATVVFLDEFQNKEGEPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E  KAD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H   
Sbjct: 318 IACAKYRYETLKADRVLYYIDSRQ--HQHLVQAWTIV-----RKAGYVPESVPLEHHA-- 368

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
               FGM++   +D  P + T+S     L     E+ +R
Sbjct: 369 ----FGMMLG--KDGRP-FKTRSGGTIKLSDLLDEAYQR 400



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 190/349 (54%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ K  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAFLE-KQQNEDHAEMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K+ +DED  F +RA   VV LQ  D   ++ W+ + D++    QKIYDR+NVTLT  
Sbjct: 194 REAKRTYDEDPEFAERARSYVVKLQGGDEYCRQMWKKLVDITMSQNQKIYDRMNVTLTRN 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVSDLKQKGLAVESEGATVVFLDEFQNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLKADRVLYYIDSRQHQHLVQAWTIVRKAGYV-PESVPLEHHAFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T+KLS+LLDE  +R+   +++KN   E++  E+    + V    +K
Sbjct: 373 LGKDGRPFKTRSGGTIKLSDLLDEAYQRAYTLVREKN--PEMSEAEVKTLAEVVGISAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGIN++
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGINAD 479



 Score =  130 bits (326), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 107/189 (56%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   +++KN   E++  E+    + V    +KYADLS +R  DY+F +D ML   GNT
Sbjct: 399  QRAYTLVREKN--PEMSEAEVKTLAEVVGISAVKYADLSKSRTTDYIFDWDNMLAFEGNT 456

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A Y+ YAYTR+ S+ R AGIN++ L        + +  E+E  LA  LL+  +V+  V R
Sbjct: 457  APYMQYAYTRVLSVFRKAGINADSL-----DAEIVISEEREAQLATRLLQFEEVITQVAR 511

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
            D   H +C YLYD++  FS FY++C  +  +++         RL LA  TAK +K+  D 
Sbjct: 512  DGTPHVMCAYLYDLAGLFSGFYEHCPILSAESDA----TRLSRLQLAALTAKTLKQGLDT 567

Query: 1111 LNIRTVHKM 1119
            L I TV +M
Sbjct: 568  LGIDTVERM 576



 Score = 48.1 bits (113), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAEAVIQ--------HLDLTGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIV---NGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +     +  +     GVQ   L +   ++VD+S+PN+A++
Sbjct: 82  FINIFLDHNWLATHARQALSLPRLGVQ---LAEPQTIVVDYSAPNVAKE 127


>gi|425736010|ref|ZP_18854320.1| arginyl-tRNA ligase [Brevibacterium casei S18]
 gi|425478944|gb|EKU46127.1| arginyl-tRNA ligase [Brevibacterium casei S18]
          Length = 576

 Score =  227 bits (579), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 141/363 (38%), Positives = 198/363 (54%), Gaps = 34/363 (9%)

Query: 211 LSDVFTHAVQVAFPE-LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 269
           L+D F  A+  AF E   D+   + S+      +F DFQ N A+ L K    K     P 
Sbjct: 8   LTDRFAAALSAAFGEDFADRDPVIRSS------QFADFQANVALPLAKELGAK-----PR 56

Query: 270 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNV-FLSRVYAGE-QIKDIIVNGVQP 327
           +IA  I          +  LA V    E++ PGF+N+ FL    AG  + +D     V  
Sbjct: 57  EIAGQIVE--------HLDLAGVCQPPEISGPGFINLTFLPEFLAGVLEAED--ATAVDA 106

Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
           P+     R+++D+S+PN+AKEMHVGHLR+T++GD ++R  EYLG+ V+R NH+GDWGT F
Sbjct: 107 PS--DPQRIVIDYSAPNVAKEMHVGHLRTTVVGDALARTHEYLGNTVIRQNHIGDWGTPF 164

Query: 388 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
           GMLI HL D   D  T      D  AFY+ ++ +FD DE F  RA   VVALQ  D    
Sbjct: 165 GMLIEHLLDVGIDSETAQTIAEDPNAFYQAARAKFDADEDFATRARTRVVALQGGDAQTL 224

Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
           + W+ +   SR  F  IY  L+VTL +    GES Y   +E +   LE +GL  + DG  
Sbjct: 225 ELWDRLVGYSREYFNHIYSLLDVTLRDADLAGESTYNDDLEAVCDDLEAQGLARMSDGAL 284

Query: 505 IMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
            ++     G D   +P+ I KSDGG+ Y T+DLAA+R+R +   AD ++YV    Q +HF
Sbjct: 285 CVFPEGYTGRDGQPLPLIIRKSDGGYGYATTDLAAVRRRAQVLHADRVLYVVGAPQALHF 344

Query: 560 RLL 562
            ++
Sbjct: 345 EMV 347



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 177/365 (48%), Gaps = 56/365 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +T++GD ++R  EYLG+ V+R NH+GDWGT FGMLI HL D   D  T      D  AFY
Sbjct: 133 TTVVGDALARTHEYLGNTVIRQNHIGDWGTPFGMLIEHLLDVGIDSETAQTIAEDPNAFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + ++ +FD DE F  RA   VVALQ  D    + W+ +   SR  F  IY  L+VTL + 
Sbjct: 193 QAARAKFDADEDFATRARTRVVALQGGDAQTLELWDRLVGYSREYFNHIYSLLDVTLRDA 252

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   +E +   LE +G                                     
Sbjct: 253 DLAGESTYNDDLEAVCDDLEAQGLARMSDGALCVFPEGYTGRDGQPLPLIIRKSDGGYGY 312

Query: 705 ---NLSLTKKLG-------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +L+  ++         ++YV    Q +HF ++   A+ AG + P    ++ V  G V
Sbjct: 313 ATTDLAAVRRRAQVLHADRVLYVVGAPQALHFEMVFATARAAGWV-PEDMVLEHVKIGNV 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D K  +TRSG  ++L+ELLDE + R+   L++ N   E +P E +E  + V  G +K
Sbjct: 372 LGSDGKILRTRSGKPLRLAELLDEAIARAKVTLEESN--VEFSPEEANEVARIVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG---INSEDPPEPDPS 871
           YADLS   +  Y F  D+ML   GNTA YL YA  RI SI R A    I   D P     
Sbjct: 430 YADLSVAHDTSYTFDLDRMLAPIGNTAPYLQYAGARIRSILRRAAAEDITFADSPIHLGE 489

Query: 872 QSEVE 876
           QSE E
Sbjct: 490 QSERE 494



 Score = 99.8 bits (247), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 8/184 (4%)

Query: 936  KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
            K+  +  + E +P E +E  + V  G +KYADLS   +  Y F  D+ML   GNTA YL 
Sbjct: 401  KVTLEESNVEFSPEEANEVARIVGIGAVKYADLSVAHDTSYTFDLDRMLAPIGNTAPYLQ 460

Query: 996  YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
            YA  RI SI R A   +ED+  A   +P+ L  + E  LA  +L   D L  V      H
Sbjct: 461  YAGARIRSILRRAA--AEDITFA--DSPIHLGEQSERELALAILGFPDALAEVAAGSQPH 516

Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1115
             +  YL+D++ AF+ FY+ C  +          +   RL L+     V++    +L IR 
Sbjct: 517  RMATYLFDLAQAFTTFYEQCPVL----TAATPELRASRLRLSATVLSVLEAGLSVLGIRV 572

Query: 1116 VHKM 1119
              +M
Sbjct: 573  PERM 576



 Score = 46.6 bits (109), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 28/142 (19%)

Query: 15  LSDVFTHAVQVAFPE-LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 73
           L+D F  A+  AF E   D+   + S+      +F DFQ N A+ L K    K     P 
Sbjct: 8   LTDRFAAALSAAFGEDFADRDPVIRSS------QFADFQANVALPLAKELGAK-----PR 56

Query: 74  DIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNV-FLSRVYAG--EQMKDIIVNGVQ 130
           +IA  I          +  LA V    E + PGF+N+ FL    AG  E      V+   
Sbjct: 57  EIAGQIVE--------HLDLAGVCQPPEISGPGFINLTFLPEFLAGVLEAEDATAVDAPS 108

Query: 131 PPTLNKKLRVLVDFSSPNIARK 152
            P      R+++D+S+PN+A++
Sbjct: 109 DPQ-----RIVIDYSAPNVAKE 125


>gi|416859546|ref|ZP_11913928.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa 138244]
 gi|334838276|gb|EGM17003.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa 138244]
 gi|453046563|gb|EME94279.1| arginyl-tRNA ligase [Pseudomonas aeruginosa PA21_ST175]
          Length = 587

 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 136/327 (41%), Positives = 187/327 (57%), Gaps = 29/327 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P D+A  +   +     T+  LAKV    E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIP----THEQLAKV----EIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F   V+    +   + +   GV+        RV++D SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQDHVWLAASLDRALADERLGVRKA--GPAQRVVIDLSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY+ +KKR
Sbjct: 146 AVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AEAELHDLEVFYRAAKKR 202

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+     GES
Sbjct: 203 FDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMADVMGES 262

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + Q+V  L  KGLL  D+G   ++ E     +   +P+ + K+ GG+ Y T+DLA
Sbjct: 263 AYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFKNAEGNPLPVIVQKAGGGYLYATTDLA 322

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFR 560
           A+R R     AD ++Y  D  Q +HF+
Sbjct: 323 AMRYRHNVLHADRVLYFVDQRQALHFQ 349



 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 185/355 (52%), Gaps = 60/355 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AEAELHDLEVFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+  
Sbjct: 197 RAAKKRFDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
              GES Y   + Q+V  L  KG L+                       + +K G     
Sbjct: 257 DVMGESAYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+ + E A++AG + P    ++ +GFG +
Sbjct: 317 ATTDLAAMRYRHNVLHADRVLYFVDQRQALHFQQVFEVARRAGFV-PAGMELEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTE------LTPTELSEAQQAV 808
            G D + FKTR G TVKL +LL+E   R+   +K++N              +L E  + V
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLEEAESRAYALVKERNEQRAERGEEPFDEVQLREIGRVV 435

Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
               +KYADLS +R  DY F+F+ ML   GNTA YLLYA TR+AS+ R  G   E
Sbjct: 436 GIDSVKYADLSKHRTSDYSFNFELMLSFEGNTAPYLLYACTRVASVFRKLGQGRE 490



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 9/194 (4%)

Query: 926  RGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
            R Y L +  ++ + +         +L E  + V    +KYADLS +R  DY F+F+ ML 
Sbjct: 403  RAYALVKERNEQRAERGEEPFDEVQLREIGRVVGIDSVKYADLSKHRTSDYSFNFELMLS 462

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTA YLLYA TR+AS+ R  G   E L        + LE  +E ALA  L +  D++
Sbjct: 463  FEGNTAPYLLYACTRVASVFRKLGQGREQL-----GGKIVLEQPQELALAAQLAQFGDLI 517

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
              V      H LC YLY+++  FS FY++C  +  +   +  +    RL LA  T + ++
Sbjct: 518  NNVALKGVPHLLCAYLYELAGLFSSFYEHCPILTAEDPAQKDS----RLRLAALTGRTLE 573

Query: 1106 KCFDILNIRTVHKM 1119
            +  ++L ++T+ +M
Sbjct: 574  QGLELLGLKTLERM 587



 Score = 43.5 bits (101), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 18/107 (16%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K    K     P D+A  +   +     T+  LAKV    E A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIP----THEQLAKV----EIAGPGFL 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F   V+    +   + +   GV+        RV++D SSPN+A++
Sbjct: 88  NFFQDHVWLAASLDRALADERLGVRKA--GPAQRVVIDLSSPNLAKE 132


>gi|422651673|ref|ZP_16714466.1| arginyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|330964749|gb|EGH65009.1| arginyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 578

 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 142/365 (38%), Positives = 209/365 (57%), Gaps = 41/365 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P D+A+ + + + ++        + + K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAEKLIAALPAD--------EQVSKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKL----RVLVDFSSPNIAKEMHVGHLRSTIIG 360
           N F +      ++   + +   PP   +K     RV+VD S+PN+AKEMHVGHLRSTIIG
Sbjct: 88  NFFQNTAALASRLDAALAD---PPLSVRKAGTAQRVVVDLSAPNLAKEMHVGHLRSTIIG 144

Query: 361 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK 420
           D ++ +LE+LG  V+R NHVGDWGTQFGML+A+LQ+K P     S  ++DL+ FY+ +K+
Sbjct: 145 DGVANVLEFLGDTVIRQNHVGDWGTQFGMLLAYLQEK-P---ATSDELSDLENFYRAAKQ 200

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDE E F +RA   VV LQ  D +    W    D+S    Q+ Y+RLNV LT     GE
Sbjct: 201 RFDESEEFAERARGLVVKLQAGDAECLTLWTRFKDISLSHCQQTYERLNVKLTPADVMGE 260

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDL 532
           S Y   +  +V  L+  GLL   +G + ++ E     D   +P+ + K+ GG+ Y T+DL
Sbjct: 261 SAYNDDLANVVNDLKATGLLVESNGAQCVFLEEFRTADDTPLPVIVQKAGGGYLYATTDL 320

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           AAIR R +  KAD  +Y  D  Q +HF+ + E       ++R   ++ H+ ++L H+G +
Sbjct: 321 AAIRYRSKVLKADRALYFVDQRQALHFQQVFE-------VARRAGFV-HEGMQLEHMG-F 371

Query: 593 GTQFG 597
           GT  G
Sbjct: 372 GTMNG 376



 Score =  215 bits (548), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 185/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++ +LE+LG  V+R NHVGDWGTQFGML+A+LQ+K P     S  ++DL+ FY
Sbjct: 140 STIIGDGVANVLEFLGDTVIRQNHVGDWGTQFGMLLAYLQEK-P---ATSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE E F +RA   VV LQ  D +    W    D+S    Q+ Y+RLNV LT  
Sbjct: 196 RAAKQRFDESEEFAERARGLVVKLQAGDAECLTLWTRFKDISLSHCQQTYERLNVKLTPA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
              GES Y   +  +V  L+  G L                        + +K G     
Sbjct: 256 DVMGESAYNDDLANVVNDLKATGLLVESNGAQCVFLEEFRTADDTPLPVIVQKAGGGYLY 315

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q +HF+ + E A++AG ++    +++ +GFG +
Sbjct: 316 ATTDLAAIRYRSKVLKADRALYFVDQRQALHFQQVFEVARRAGFVHEG-MQLEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE   R+   +K+KN   E+   EL    +AV    +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLDEAEERAYTLVKEKN--PEVAEAELRSIAKAVGISAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD+ML   GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRASDYSFNFDQMLSFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ E+   EL    +AV    +KYADLS +R  DY F+FD+ML   GNTA YLLYAYT
Sbjct: 408  KEKNPEVAEAELRSIAKAVGISAVKYADLSKHRASDYSFNFDQMLSFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G   +     A    + LE  +E  LA  L + N+ L  V      H LC 
Sbjct: 468  RVAGVFRKLGTPFD-----ASKGHIVLEAPQEQELAARLAQFNETLNNVAEKGTPHVLCA 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+  D+L + T+ +M
Sbjct: 523  YLYDLAGLFSSFYENCPILGAENPDQQQS----RLRLAALTGRTLKQGLDLLGLETLERM 578



 Score = 43.9 bits (102), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 20/108 (18%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K    K     P D+A+ + + + ++        + + K+E A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAEKLIAALPAD--------EQVSKVEIAGPGFL 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKL----RVLVDFSSPNIARK 152
           N F +      ++   + +   PP   +K     RV+VD S+PN+A++
Sbjct: 88  NFFQNTAALASRLDAALAD---PPLSVRKAGTAQRVVVDLSAPNLAKE 132


>gi|359450089|ref|ZP_09239557.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. BSi20480]
 gi|358044078|dbj|GAA75806.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. BSi20480]
          Length = 580

 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/357 (38%), Positives = 200/357 (56%), Gaps = 60/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD I R LE+ G  V+R NH+GDWGTQFGMLIAHL+D+    +  +S  
Sbjct: 133 HLR----STIIGDAIVRALEFRGDKVIRQNHMGDWGTQFGMLIAHLEDQISQGVDLESVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y R
Sbjct: 189 LADLETFYRDAKKRFDDEEGFADKARDYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKR 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSL------------------------- 708
           LNVTLT+     ES Y   +  ++  L+ K N+++                         
Sbjct: 249 LNVTLTQADIMAESAYNSELNDIISLLKDK-NIAVESQGAQVVFLDELANKDGEPSAFIV 307

Query: 709 --------------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                               + KLG   I+   D  Q +HF  +E  A+KAG+L  ++T 
Sbjct: 308 QKSGGGFLYATTDLAACDYRSNKLGAERILIFVDARQSLHFNQVELTARKAGLLR-DETS 366

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805
            +F  FG ++G D K FKTR+G TVKL++LL+E + R+  KL +  R ++L+  + SE  
Sbjct: 367 YEFCPFGTMMGADGKPFKTRTGGTVKLADLLEESISRAATKLAE--RESDLSDHDRSEIA 424

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           + V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTR+ SI R +G+++
Sbjct: 425 RKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRVRSIFRKSGVDA 481



 Score =  221 bits (562), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 139/378 (36%), Positives = 202/378 (53%), Gaps = 45/378 (11%)

Query: 205 MSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++R  L +    A+  A  PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRTILVEKAIAAMTAAGLPE--DTNPAVTQSTRP---QFGDYQINGAMGAAKKMK--- 52

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
              NP ++AQ I          N  +  + +K E+A PGF+N+ L          + + N
Sbjct: 53  --SNPRELAQKIID--------NLDVTDIAEKTEIAGPGFINIHLK--------PEFLAN 94

Query: 324 GVQPPTLNKKL---------RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDV 374
            V+    + KL          V+VD+SSPN+AKEMHVGHLRSTIIGD I R LE+ G  V
Sbjct: 95  SVKAANSDAKLAVNEHANPQTVVVDYSSPNLAKEMHVGHLRSTIIGDAIVRALEFRGDKV 154

Query: 375 VRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAY 433
           +R NH+GDWGTQFGMLIAHL+D+    +  +S  +ADL+ FY+++KKRFD++E F  +A 
Sbjct: 155 IRQNHMGDWGTQFGMLIAHLEDQISQGVDLESVALADLETFYRDAKKRFDDEEGFADKAR 214

Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPY 490
             VV LQ  D   +K W++    S +  +++Y RLNVTLT+     ES Y   +  ++  
Sbjct: 215 DYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKRLNVTLTQADIMAESAYNSELNDIISL 274

Query: 491 LEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKAD 545
           L+ K +     G ++++      +D       + KS GGF Y T+DLAA   R  +  A+
Sbjct: 275 LKDKNIAVESQGAQVVFLDELANKDGEPSAFIVQKSGGGFLYATTDLAACDYRSNKLGAE 334

Query: 546 WIVYVTDLGQGVHFRLLE 563
            I+   D  Q +HF  +E
Sbjct: 335 RILIFVDARQSLHFNQVE 352



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            + R+  KL +  R ++L+  + SE  + V  G +KYADLS +R  DY+F++D ML   G 
Sbjct: 401  ISRAATKLAE--RESDLSDHDRSEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGA 458

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA YL YAYTR+ SI R +G+++  L     +  V++   +E ALA  LL++ +VL L+ 
Sbjct: 459  TAPYLQYAYTRVRSIFRKSGVDAASL-----NADVAIAEPQEKALALKLLQLEEVLDLMI 513

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             +   H LC YLY++++ +  FY+ C  ++   EG    V   RL+L    A  +K   D
Sbjct: 514  SEATPHVLCGYLYELASLYMTFYEACPVLK---EGVEPNVRDSRLVLCNLVADTLKIGLD 570

Query: 1110 ILNIRTVHKM 1119
            +L I  + +M
Sbjct: 571  LLGIEVMEQM 580



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 38/175 (21%)

Query: 9   MSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++R  L +    A+  A  PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRTILVEKAIAAMTAAGLPE--DTNPAVTQSTRP---QFGDYQINGAMGAAKKMK--- 52

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
              NP ++AQ I          N  +  + +K E A PGF+N+ L          + + N
Sbjct: 53  --SNPRELAQKIID--------NLDVTDIAEKTEIAGPGFINIHLK--------PEFLAN 94

Query: 128 GVQPPTLNKKL---------RVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAI 173
            V+    + KL          V+VD+SSPN+A++      HL S I    I +A+
Sbjct: 95  SVKAANSDAKLAVNEHANPQTVVVDYSSPNLAKE--MHVGHLRSTIIGDAIVRAL 147


>gi|388470646|ref|ZP_10144855.1| arginine--tRNA ligase [Pseudomonas synxantha BG33R]
 gi|388007343|gb|EIK68609.1| arginine--tRNA ligase [Pseudomonas synxantha BG33R]
          Length = 578

 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 155/402 (38%), Positives = 219/402 (54%), Gaps = 39/402 (9%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V +T +K     GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQALTQLVNEGVLPEGLSPAIQVENTRDK---THGDFASNIAMMLSK---PAGM 57

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K  P D+A+ I       +A  P+ A V  K E+A PGF+N F +      ++   + + 
Sbjct: 58  K--PRDLAEKI-------IAALPADASVT-KAEIAGPGFINFFQNTQALASRLDAALADA 107

Query: 325 -VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
            +         RV++D S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG  V+R NHVGDW
Sbjct: 108 KIGAHKAGDTQRVVIDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDTVIRQNHVGDW 167

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGML+A+LQ+  P     S  +ADL+ FY+ +KKRFDE E F  RA   VV LQ  D
Sbjct: 168 GTQFGMLMAYLQEN-P---ITSNELADLENFYRAAKKRFDESEEFADRARGLVVKLQAGD 223

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELD 500
            +    W    ++S    Q+IY+ LNV LT     GES Y   +  +V  L+ KGLL   
Sbjct: 224 QECLALWNRFREISLSHCQEIYELLNVKLTMADVMGESAYNDDLINVVNDLKAKGLLVES 283

Query: 501 DGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
           +G + ++ E     D   +P+ IVK+DGG+ Y T+DLAA+R R    KAD  +Y  D  Q
Sbjct: 284 NGAQCVFLEEFKTADGEPLPVIIVKADGGYLYATTDLAAVRYRSGVLKADRALYFVDQRQ 343

Query: 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            +HF+ + E       ++R   ++ H  + + H+G +GT  G
Sbjct: 344 ALHFQQVFE-------VARRAGFVTHP-MHMEHMG-FGTMNG 376



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 185/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+LQ+  P     S  +ADL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDTVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSNELADLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  D +    W    ++S    Q+IY+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFADRARGLVVKLQAGDQECLALWNRFREISLSHCQEIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLINVVNDLKAKGLLVESNGAQCVFLEEFKTADGEPLPVIIVKADGGYLY 315

Query: 707 ------SLTKKLGIV------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                 ++  + G++      Y  D  Q +HF+ + E A++AG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGVLKADRALYFVDQRQALHFQQVFEVARRAGFVT-HPMHMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+ + +K+KN   EL   +L    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAQERAYNLVKEKN--PELAEADLRNIARVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  109 bits (273), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 96/175 (54%), Gaps = 11/175 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+ + +K+KN   EL   +L    + V  G +KYADLS +R  DY F+FD ML+  GNTA
Sbjct: 402  RAYNLVKEKN--PELAEADLRNIARVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTA 459

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A + R  G   +D         +   HE+E  LA  L + ++VL  V   
Sbjct: 460  PYLLYAYTRVAGVFRKLG---KDFSEVEGQIVLDAAHEQE--LAAKLAQFSEVLNSVGEK 514

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
               H LC YLY+++  FS FY+NC  +  D E + ++    RL LA    + +K+
Sbjct: 515  GTPHILCTYLYEVAGLFSSFYENCPILTADDEAQKQS----RLRLAALAGRTLKQ 565



 Score = 42.0 bits (97), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 18/145 (12%)

Query: 10  SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           ++R  +    T  V +   PE       V +T +K     GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQALTQLVNEGVLPEGLSPAIQVENTRDK---THGDFASNIAMMLSK---PAGM 57

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K  P D+A+ I       +A  P+ A V  K E A PGF+N F +      ++   + + 
Sbjct: 58  K--PRDLAEKI-------IAALPADASVT-KAEIAGPGFINFFQNTQALASRLDAALADA 107

Query: 129 -VQPPTLNKKLRVLVDFSSPNIARK 152
            +         RV++D S+PN+A++
Sbjct: 108 KIGAHKAGDTQRVVIDLSAPNLAKE 132


>gi|440287175|ref|YP_007339940.1| arginyl-tRNA synthetase [Enterobacteriaceae bacterium strain FGI
           57]
 gi|440046697|gb|AGB77755.1| arginyl-tRNA synthetase [Enterobacteriaceae bacterium strain FGI
           57]
          Length = 577

 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 143/392 (36%), Positives = 208/392 (53%), Gaps = 47/392 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLTGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  E +   + +   G+  P       ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLDPAFLAEHVNKALASDRLGITQPAPQT---IVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++K
Sbjct: 139 GDASVRTLELLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQSGDEYFREMWRKLVDITMTQNQITYNRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ KG+    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGVVADLKAKGMAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYVPESVPLEHH 367

Query: 589 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620
           +      FGM++      F      +  +ADL
Sbjct: 368 M------FGMMLGKDGKPFKTRAGGTVKLADL 393



 Score =  219 bits (559), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 136/350 (38%), Positives = 185/350 (52%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDASVRTLELLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 RDAKKHYDEDEAFAERARSYVVKLQSGDEYFREMWRKLVDITMTQNQITYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNPMLPGVVADLKAKGMAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLADLLDEALERARRLVVEKN--PDMPADELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI   +
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIEESE 480



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 103/178 (57%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +   AV  G +KYADLS NR  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AGI   +L  A     V ++ ++E  LA  LL+  + L +V R+   H +C YL
Sbjct: 468  LSVFRKAGIEESELLNAT----VEIKEDREAQLAARLLQFEETLNVVAREGTPHVMCAYL 523

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  ++E    ++   RL LA  TAK +K   D L I TV +M
Sbjct: 524  YDLAGLFSGFYEHCPILSAESE----SIRNSRLKLALLTAKTLKTGLDTLGIETVERM 577



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ + S        +  L  +  K+E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLS--------HLDLTGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  E +   + +   G+  P       ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLAEHVNKALASDRLGITQPAPQT---IVVDYSAPNVAKE 127


>gi|387891636|ref|YP_006321933.1| arginyl-tRNA synthetase [Pseudomonas fluorescens A506]
 gi|387162739|gb|AFJ57938.1| arginyl-tRNA synthetase [Pseudomonas fluorescens A506]
          Length = 578

 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 155/402 (38%), Positives = 219/402 (54%), Gaps = 39/402 (9%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V +T +K     GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQALTQLVHEGVLPEGLSPAIQVENTRDK---THGDFASNIAMMLSK---PAGM 57

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K  P D+A+ I       +A  P+ A V  K E+A PGF+N F +      ++   + + 
Sbjct: 58  K--PRDLAEKI-------IAALPADASVT-KAEIAGPGFINFFQNTQALASRLDAALADA 107

Query: 325 -VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
            +         RV++D S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG  V+R NHVGDW
Sbjct: 108 RIGARKAGDSQRVVIDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDTVIRQNHVGDW 167

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGML+A+LQ+  P     S  +ADL+ FY+ +KKRFDE E F  RA   VV LQ  D
Sbjct: 168 GTQFGMLMAYLQEN-P---ITSNELADLENFYRAAKKRFDESEEFADRARGLVVKLQAGD 223

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELD 500
            +    W    ++S    Q+IY+ LNV LT     GES Y   +  +V  L+ KGLL   
Sbjct: 224 EECLALWNRFREISLSHCQEIYELLNVKLTMADVMGESAYNDDLINVVNDLKAKGLLVES 283

Query: 501 DGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
           +G + ++ E     D   +P+ IVK+DGG+ Y T+DLAA+R R    KAD  +Y  D  Q
Sbjct: 284 NGAQCVFLEEFKTADGEPLPVIIVKADGGYLYATTDLAAVRYRSGVLKADRALYFVDQRQ 343

Query: 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            +HF+ + E       ++R   ++ H  + + H+G +GT  G
Sbjct: 344 ALHFQQVFE-------VARRAGFVTHP-MHMEHMG-FGTMNG 376



 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 185/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+LQ+  P     S  +ADL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDTVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSNELADLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  D +    W    ++S    Q+IY+ LNV LT  
Sbjct: 196 RAAKKRFDESEEFADRARGLVVKLQAGDEECLALWNRFREISLSHCQEIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLINVVNDLKAKGLLVESNGAQCVFLEEFKTADGEPLPVIIVKADGGYLY 315

Query: 707 ------SLTKKLGIV------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                 ++  + G++      Y  D  Q +HF+ + E A++AG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGVLKADRALYFVDQRQALHFQQVFEVARRAGFVT-HPMHMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+ + +K+KN   EL   +L    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAQERAYNLVKEKN--PELAEADLRNIARVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  110 bits (274), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 95/175 (54%), Gaps = 11/175 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+ + +K+KN   EL   +L    + V  G +KYADLS +R  DY F+FD ML+  GNTA
Sbjct: 402  RAYNLVKEKN--PELAEADLRNIARVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTA 459

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A + R  G   +D         +   HE+E  LA  L +  +VL  V   
Sbjct: 460  PYLLYAYTRVAGVFRKLG---KDFSEVEGQIALDAAHEQE--LAAKLAQFGEVLNSVGEK 514

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
               H LC YLY+++  FS FY+NC  +  D E + ++    RL LA    + +K+
Sbjct: 515  GTPHILCTYLYEVAGLFSSFYENCPILTADDEAQKQS----RLRLAALAGRTLKQ 565



 Score = 42.4 bits (98), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 18/145 (12%)

Query: 10  SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           ++R  +    T  V +   PE       V +T +K     GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQALTQLVHEGVLPEGLSPAIQVENTRDK---THGDFASNIAMMLSK---PAGM 57

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K  P D+A+ I       +A  P+ A V  K E A PGF+N F +      ++   + + 
Sbjct: 58  K--PRDLAEKI-------IAALPADASVT-KAEIAGPGFINFFQNTQALASRLDAALADA 107

Query: 129 -VQPPTLNKKLRVLVDFSSPNIARK 152
            +         RV++D S+PN+A++
Sbjct: 108 RIGARKAGDSQRVVIDLSAPNLAKE 132


>gi|443288178|ref|ZP_21027272.1| Arginyl-tRNA synthetase [Micromonospora lupini str. Lupac 08]
 gi|385881755|emb|CCH22365.1| Arginyl-tRNA synthetase [Micromonospora lupini str. Lupac 08]
          Length = 572

 Score =  227 bits (578), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 193/368 (52%), Gaps = 61/368 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD  +RLLE+LGH V+R NH+GDWGT FGMLI HL D       +   + DL  FY
Sbjct: 132 STVIGDAAARLLEWLGHRVLRANHLGDWGTPFGMLIEHLADLGEAEAAQELSMGDLDTFY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K ++ +FD DE F +R+   VVALQ  DP   + W ++ + S R F  +YD L+VTL+ER
Sbjct: 192 KAARAKFDADEAFAERSRLRVVALQGGDPVTLRLWRLLVEQSERYFMTVYDLLDVTLSER 251

Query: 685 ---GESFYQKHMEQLVPYLE---------------------------------------- 701
              GES Y   +  +V  L+                                        
Sbjct: 252 DFHGESSYNGLLGPVVEELDRLRLLRESDGAACVFPPGSVGRDGEPLPLIVRKSDGGYGY 311

Query: 702 ----------KKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                     + G L  T+   ++YV  L Q  HF ++   A +AG L P   R + VGF
Sbjct: 312 AATDLAAIRRRTGALGATR---LLYVVGLPQRRHFEMVYAVAAQAGWLAP-PARAEHVGF 367

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYG 811
           G +LG D +  ++R+G +VKL  LL+E + R+    +++N   EL   E +E  +AV  G
Sbjct: 368 GSILGSDGRMLRSRAGGSVKLVGLLEEAITRATALARERN--PELGEAEAAEVGRAVGIG 425

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPS 871
            IKYADLS++RN DYV  +++ML   GNTA YL YAY+RI SI R AG+ +   P+   S
Sbjct: 426 AIKYADLSNDRNRDYVLDWERMLSLDGNTAPYLQYAYSRIGSIFRRAGVAAR--PDAAVS 483

Query: 872 QSEVEDRC 879
            +E  +R 
Sbjct: 484 LAEPAERA 491



 Score =  222 bits (566), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 132/328 (40%), Positives = 187/328 (57%), Gaps = 26/328 (7%)

Query: 246 DFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVN 305
           DFQ + A+AL +        + P DIA        +E+     LA V  + EV+ PGF+N
Sbjct: 34  DFQSDAALALARRLG-----RPPRDIA--------AEVLEQAELADVCSRAEVSGPGFLN 80

Query: 306 VFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           + ++       +  + V+   GV  P   +   V+VD+S+PN+AKEMHVGHLRST+IGD 
Sbjct: 81  LTVADQALAGLVAALAVDRRLGV--PVAVEPETVVVDYSAPNVAKEMHVGHLRSTVIGDA 138

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
            +RLLE+LGH V+R NH+GDWGT FGMLI HL D       +   + DL  FYK ++ +F
Sbjct: 139 AARLLEWLGHRVLRANHLGDWGTPFGMLIEHLADLGEAEAAQELSMGDLDTFYKAARAKF 198

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           D DE F +R+   VVALQ  DP   + W ++ + S R F  +YD L+VTL+ER   GES 
Sbjct: 199 DADEAFAERSRLRVVALQGGDPVTLRLWRLLVEQSERYFMTVYDLLDVTLSERDFHGESS 258

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L++  LL   DG   ++     G D   +P+ + KSDGG+ Y  +DLAA
Sbjct: 259 YNGLLGPVVEELDRLRLLRESDGAACVFPPGSVGRDGEPLPLIVRKSDGGYGYAATDLAA 318

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           IR+R     A  ++YV  L Q  HF ++
Sbjct: 319 IRRRTGALGATRLLYVVGLPQRRHFEMV 346



 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 102/180 (56%), Gaps = 11/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + R+ EL   E +E  +AV  G IKYADLS++RN DYV  +++ML   GNTA YL YAY+
Sbjct: 404  RERNPELGEAEAAEVGRAVGIGAIKYADLSNDRNRDYVLDWERMLSLDGNTAPYLQYAYS 463

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI R AG+       A     VSL    E ALA  L+    V+  V  +L  H+L  
Sbjct: 464  RIGSIFRRAGV------AARPDAAVSLAEPAERALAFELVGFGRVVGEVADNLEFHNLAG 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++ AFS FY+ C  +  D     + V   RL+L + TA+V+++   +L IRT  +M
Sbjct: 518  YLYRLAAAFSTFYERCPVLRAD-----EPVRESRLVLCDLTARVLRQGLHLLGIRTPERM 572


>gi|333375134|ref|ZP_08466958.1| arginine--tRNA ligase [Kingella kingae ATCC 23330]
 gi|332971551|gb|EGK10501.1| arginine--tRNA ligase [Kingella kingae ATCC 23330]
          Length = 568

 Score =  227 bits (578), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 191/346 (55%), Gaps = 57/346 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+++R+L +LGH+V+R NHVGDWGTQFGML+A+L ++  D       +ADL+ FY
Sbjct: 131 SSIIGDSLARVLAFLGHNVIRQNHVGDWGTQFGMLVAYLVEQQQD--NAEFKLADLEQFY 188

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   ++S +  + +Y +L + L   
Sbjct: 189 RNAKVRFDEDAAFADLAREYVVKLQGGDAAVLALWQQFVEISLQHAEAVYAKLGLKLQRA 248

Query: 685 ---GESFYQKHMEQLVPYLEKKGNLSL--------------------------------- 708
              GES Y   ++ ++  L  KG L++                                 
Sbjct: 249 DVAGESSYNDDLQNVIDELTAKG-LAVESDGAKVVFLDEFKNKDGEPAAFIVQKQGGGFL 307

Query: 709 ------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                         KLG   ++YV D  Q +HF+ L   ++KAG L P     +F+GFG 
Sbjct: 308 YATTDFACMRYRVGKLGANRLMYVVDTRQDLHFKQLFSASRKAGWL-PENVSAEFIGFGT 366

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           ++G+D K FKTRSGDTVKL +LLDE + R+   +++KN   +L+  E+++  + V  G +
Sbjct: 367 MMGKDGKPFKTRSGDTVKLVDLLDEAVERATALVREKN--ADLSAEEVAQIGEVVGIGAV 424

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           KYADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ + AG
Sbjct: 425 KYADLSKNRTSDYVFDWDNMLSFEGNTAPYLQYAYTRVQSVFKKAG 470



 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 124/328 (37%), Positives = 184/328 (56%), Gaps = 26/328 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           K GDFQ N  M   K        +NP ++AQ +A     EL    ++A      EVA PG
Sbjct: 34  KHGDFQINGVMGAAK-----KAGQNPRELAQKVAD----ELHGKGAIASA----EVAGPG 80

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+ L+  +  E +    +N  + P       V++D+SSPN+AKEMHVGHLRS+IIGD+
Sbjct: 81  FINLRLAADFLAENLNSGSLNIEKTPNPQT---VVIDYSSPNLAKEMHVGHLRSSIIGDS 137

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           ++R+L +LGH+V+R NHVGDWGTQFGML+A+L ++  D       +ADL+ FY+ +K RF
Sbjct: 138 LARVLAFLGHNVIRQNHVGDWGTQFGMLVAYLVEQQQD--NAEFKLADLEQFYRNAKVRF 195

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DED  F   A + VV LQ  D      W+   ++S +  + +Y +L + L      GES 
Sbjct: 196 DEDAAFADLAREYVVKLQGGDAAVLALWQQFVEISLQHAEAVYAKLGLKLQRADVAGESS 255

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   ++ ++  L  KGL    DG K+++      +D       + K  GGF Y T+D A 
Sbjct: 256 YNDDLQNVIDELTAKGLAVESDGAKVVFLDEFKNKDGEPAAFIVQKQGGGFLYATTDFAC 315

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           +R R+ +  A+ ++YV D  Q +HF+ L
Sbjct: 316 MRYRVGKLGANRLMYVVDTRQDLHFKQL 343



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ +L+  E+++  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 401  REKNADLSAEEVAQIGEVVGIGAVKYADLSKNRTSDYVFDWDNMLSFEGNTAPYLQYAYT 460

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ + AG    +  V A    + LE   E  LA  LL+  DV+  V      H+L  
Sbjct: 461  RVQSVFKKAG----EWNVQA---ALKLEQPLEQQLAVELLKFEDVVASVAETSYPHYLAA 513

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++T FS FY+ C  ++  A+G ++     RL LA+ TA+ MK   D+L I  +  M
Sbjct: 514  YLYQLATLFSRFYEACPILK--AQGDVR---DSRLKLAKLTAETMKTGLDLLGIDVLEVM 568



 Score = 47.4 bits (111), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 18/128 (14%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           K GDFQ N  M   K        +NP ++AQ +A     EL    ++A      E A PG
Sbjct: 34  KHGDFQINGVMGAAK-----KAGQNPRELAQKVAD----ELHGKGAIASA----EVAGPG 80

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHD 166
           F+N+ L+  +  E +    +N  + P       V++D+SSPN+A++      HL S I  
Sbjct: 81  FINLRLAADFLAENLNSGSLNIEKTPNPQT---VVIDYSSPNLAKE--MHVGHLRSSIIG 135

Query: 167 ILISKAIA 174
             +++ +A
Sbjct: 136 DSLARVLA 143


>gi|372277262|ref|ZP_09513298.1| arginyl-tRNA synthetase [Pantoea sp. SL1_M5]
 gi|390434888|ref|ZP_10223426.1| arginyl-tRNA ligase [Pantoea agglomerans IG1]
          Length = 576

 Score =  227 bits (578), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 145/400 (36%), Positives = 220/400 (55%), Gaps = 46/400 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAETVIQ--------HLDLTGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKL----RVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N+FL   +     ++     ++ P L  +L     ++VD+S+PN+AKEMHVGH+RSTI
Sbjct: 82  FINIFLDHNWLASHARE----ALRLPRLGVQLAEPQTIVVDYSAPNVAKEMHVGHVRSTI 137

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ K  +       +ADL+ FY+E+
Sbjct: 138 IGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAFLE-KQQNEDHAEMALADLEGFYREA 196

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER--- 475
           K+ +DED  F +RA   VV LQ  D   ++ W+ + D++    QKIYDR+NVTLT     
Sbjct: 197 KRTYDEDPEFAERARSYVVKLQGGDDYCRQMWKKLVDITMSQNQKIYDRMNVTLTRNDVM 256

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTS 530
           GES Y   +  +V  L++KGL    +G  +++    +++   PM ++  K DGG+ Y T+
Sbjct: 257 GESLYNDMLPGIVSDLKQKGLAVESEGATVVFLDEFQNKEGEPMGVIIQKKDGGYLYTTT 316

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVG 590
           D+A  + R E  KAD ++Y  D  Q  H  L++  TI+     R   Y+   V   +H  
Sbjct: 317 DIACAKYRYETLKADRVLYYIDSRQ--HQHLVQAWTIV-----RKAGYVPESVPLEHHA- 368

Query: 591 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
                FGM++   +D  P + T+S     L     E+ +R
Sbjct: 369 -----FGMMLG--KDGRP-FKTRSGGTIKLSDLLDEAYQR 400



 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 189/349 (54%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ K  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAFLE-KQQNEDHAEMALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K+ +DED  F +RA   VV LQ  D   ++ W+ + D++    QKIYDR+NVTLT  
Sbjct: 194 REAKRTYDEDPEFAERARSYVVKLQGGDDYCRQMWKKLVDITMSQNQKIYDRMNVTLTRN 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVSDLKQKGLAVESEGATVVFLDEFQNKEGEPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLKADRVLYYIDSRQHQHLVQAWTIVRKAGYV-PESVPLEHHAFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T+KLS+LLDE  +R+   +++KN   E++  E+    + V    +K
Sbjct: 373 LGKDGRPFKTRSGGTIKLSDLLDEAYQRAYTLVREKN--PEMSEAEVKTLAEVVGISAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI+++
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGIDAD 479



 Score =  129 bits (324), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   +++KN   E++  E+    + V    +KYADLS +R  DY+F +D ML   GNT
Sbjct: 399  QRAYTLVREKN--PEMSEAEVKTLAEVVGISAVKYADLSKSRTTDYIFDWDNMLAFEGNT 456

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A Y+ YAYTR+ S+ R AGI+++ L        + +  E+E  LA  LL+  +V+  V R
Sbjct: 457  APYMQYAYTRVLSVFRKAGIDADSL-----DAEIVISEEREAQLATRLLQFEEVITQVAR 511

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
            D   H +C YLYD++  FS FY++C  +  +++    T    RL LA  TAK +K+  D 
Sbjct: 512  DGTPHVMCAYLYDLAGLFSGFYEHCPILTAESD----TTRLSRLQLAALTAKTLKQGLDT 567

Query: 1111 LNIRTVHKM 1119
            L I TV +M
Sbjct: 568  LGIDTVERM 576



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 21/110 (19%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----QAPRQLAETVIQ--------HLDLTGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKL----RVLVDFSSPNIARK 152
           F+N+FL   +     ++     ++ P L  +L     ++VD+S+PN+A++
Sbjct: 82  FINIFLDHNWLASHARE----ALRLPRLGVQLAEPQTIVVDYSAPNVAKE 127


>gi|296101787|ref|YP_003611933.1| arginyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056246|gb|ADF60984.1| arginyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 577

 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 202/373 (54%), Gaps = 47/373 (12%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MPPRQLAEQVL--------THLDLTGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +    +   + +   GV  P   +   V++D+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLASHVDAALKSDRLGVAQP---EPQTVVIDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  DP + + W  + D++    Q  Y+RLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDPYFLEMWRKLVDITMSQNQLTYNRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ K L    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKHLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+  D V L H
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYV-PDCVPLEH 366

Query: 589 VGDWGTQFGMLIA 601
                  FGM++ 
Sbjct: 367 -----HMFGMMLG 374



 Score =  223 bits (568), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 137/347 (39%), Positives = 185/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEMA-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  DP + + W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDPYFLEMWRKLVDITMSQNQLTYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKK----------------------------------GNLS 707
              GES Y   +  +V  L+ K                                  G L 
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKHLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYLY 313

Query: 708 LTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T  +              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDCVPLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKLS+LLDE L R+   + +KN   ++   EL +   AV  G +K
Sbjct: 373 LGKDGKPFKTRAGGTVKLSDLLDEALERARRLVAEKN--PDMPAEELEKLANAVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKANID 477



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 109/191 (57%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPAEELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I   D  V A +T V++  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKANI---DESVLANAT-VTITEDREAQLAARLLQFEETLSVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             RD   H +C YLYD++  FS FY++C  +  + E    +V   RL LA+ TAK +K   
Sbjct: 511  ARDGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----SVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 47.4 bits (111), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MPPRQLAEQVL--------THLDLTGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +    +   + +   GV  P   +   V++D+S+PN+A++
Sbjct: 82  FINIFLEPAFLASHVDAALKSDRLGVAQP---EPQTVVIDYSAPNVAKE 127


>gi|381400858|ref|ZP_09925777.1| arginyl-tRNA synthetase [Kingella kingae PYKK081]
 gi|380834142|gb|EIC13991.1| arginyl-tRNA synthetase [Kingella kingae PYKK081]
          Length = 568

 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 191/346 (55%), Gaps = 57/346 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+++R+L +LGH+V+R NHVGDWGTQFGML+A+L ++  D       +ADL+ FY
Sbjct: 131 SSIIGDSLARVLAFLGHNVIRQNHVGDWGTQFGMLVAYLVEQQQD--NAEFKLADLEQFY 188

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   ++S +  + +Y +L + L   
Sbjct: 189 RNAKVRFDEDAAFADLAREYVVKLQGGDAAVLALWQQFVEISLQHAEAVYAKLGLKLQRA 248

Query: 685 ---GESFYQKHMEQLVPYLEKKGNLSL--------------------------------- 708
              GES Y   ++ ++  L  KG L++                                 
Sbjct: 249 DVAGESSYNDDLQNVIDELTAKG-LAVESDGAKVVFLDEFKNKDGEPAAFIVQKQGGGFL 307

Query: 709 ------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                         KLG   ++YV D  Q +HF+ L   ++KAG L P     +F+GFG 
Sbjct: 308 YATTDFACMRYRVGKLGANRLMYVVDTRQDLHFKQLFSASRKAGWL-PENVSAEFIGFGT 366

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           ++G+D K FKTRSGDTVKL +LLDE + R+   +++KN   +L+  E+++  + V  G +
Sbjct: 367 MMGKDGKPFKTRSGDTVKLVDLLDEAVERATALVREKN--ADLSAEEVAQIGEVVGIGAV 424

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           KYADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ + AG
Sbjct: 425 KYADLSKNRTSDYVFDWDNMLSFEGNTAPYLQYAYTRVQSVFKKAG 470



 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 124/328 (37%), Positives = 184/328 (56%), Gaps = 26/328 (7%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           K GDFQ N  M   K        +NP ++AQ +A     EL    ++A      EVA PG
Sbjct: 34  KHGDFQINGVMGAAK-----KAGQNPRELAQKVAD----ELHGKGAIASA----EVAGPG 80

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+ L+  +  E +    +N  + P       V++D+SSPN+AKEMHVGHLRS+IIGD+
Sbjct: 81  FINLRLAADFLAENLNSGSLNIEKTPNPQT---VVIDYSSPNLAKEMHVGHLRSSIIGDS 137

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           ++R+L +LGH+V+R NHVGDWGTQFGML+A+L ++  D       +ADL+ FY+ +K RF
Sbjct: 138 LARVLAFLGHNVIRQNHVGDWGTQFGMLVAYLVEQQQD--NAEFKLADLEQFYRNAKVRF 195

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DED  F   A + VV LQ  D      W+   ++S +  + +Y +L + L      GES 
Sbjct: 196 DEDAAFADLAREYVVKLQGGDAAVLALWQQFVEISLQHAEAVYAKLGLKLQRADVAGESS 255

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   ++ ++  L  KGL    DG K+++      +D       + K  GGF Y T+D A 
Sbjct: 256 YNDDLQNVIDELTAKGLAVESDGAKVVFLDEFKNKDGEPAAFIVQKQGGGFLYATTDFAC 315

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           +R R+ +  A+ ++YV D  Q +HF+ L
Sbjct: 316 MRYRVGKLGANRLMYVVDTRQDLHFKQL 343



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ +L+  E+++  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 401  REKNADLSAEEVAQIGEVVGIGAVKYADLSKNRTSDYVFDWDNMLSFEGNTAPYLQYAYT 460

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ + AG    +  V A    + LE   E  LA  LL+  DV+  V      H+L  
Sbjct: 461  RVQSVFKKAG----EWNVQA---ALKLEQPLEQQLAVELLKFEDVVASVAETSYPHYLAA 513

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++T FS FY+ C  ++  AEG ++     RL LA+ TA+ M+   D+L I  +  M
Sbjct: 514  YLYQLATLFSRFYEVCPILK--AEGDVR---DSRLKLAKLTAETMRTGLDLLGIDVLEVM 568



 Score = 47.4 bits (111), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 18/128 (14%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           K GDFQ N  M   K        +NP ++AQ +A     EL    ++A      E A PG
Sbjct: 34  KHGDFQINGVMGAAK-----KAGQNPRELAQKVAD----ELHGKGAIASA----EVAGPG 80

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHD 166
           F+N+ L+  +  E +    +N  + P       V++D+SSPN+A++      HL S I  
Sbjct: 81  FINLRLAADFLAENLNSGSLNIEKTPNPQT---VVIDYSSPNLAKE--MHVGHLRSSIIG 135

Query: 167 ILISKAIA 174
             +++ +A
Sbjct: 136 DSLARVLA 143


>gi|302528902|ref|ZP_07281244.1| arginyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302437797|gb|EFL09613.1| arginyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 572

 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 142/366 (38%), Positives = 199/366 (54%), Gaps = 48/366 (13%)

Query: 246 DFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVN 305
           D+QCN AM+L K        K P ++A  I          N  L  V D+ E+A PGF+N
Sbjct: 42  DYQCNLAMSLGKRLG-----KPPREVAAGIVE--------NLELDGVADRPEIAGPGFLN 88

Query: 306 VFLSRVY----AGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
             L R +      EQ +D   + +  P   +  RV +D+SSPN+AKEMHVGHLRST++GD
Sbjct: 89  FVLRREWLEQRVAEQARD---DRLGVPETEQPRRVALDYSSPNVAKEMHVGHLRSTVLGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ISRLL  +GH+V+  NH+GDWGT FGMLI H  D+       S   +DL AFY+ ++++
Sbjct: 146 AISRLLRVVGHEVLPHNHLGDWGTPFGMLIEHHLDE------PSGDRSDLNAFYQAARRK 199

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FD DE F  R+ + VV LQ  DPD    W+ + D S R F   Y +L +TLT+    GES
Sbjct: 200 FDADEAFATRSRERVVKLQSGDPDTLAFWQELVDESTRHFNAAYRQLGITLTDDDIYGES 259

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-------DRGSIPMTIVKSDGGFTYDTSD 531
           FY  ++ ++V  LE  GL E+ DG   ++ E       DR  +P+ + K DGG+ Y  +D
Sbjct: 260 FYNPYLGEVVDELEADGLTEISDGAVCVFPEGFANREGDR--LPLIVRKRDGGYGYAATD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           LA IR    E  A  ++YV    Q  HF ++         ++R   +L  D V   H+G 
Sbjct: 318 LATIRYWTAERGATDLLYVVGTPQAQHFAMIF-------AVARAAGWL--DGVHAEHIG- 367

Query: 592 WGTQFG 597
           +G+  G
Sbjct: 368 FGSILG 373



 Score =  206 bits (523), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 129/352 (36%), Positives = 187/352 (53%), Gaps = 61/352 (17%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST++GD ISRLL  +GH+V+  NH+GDWGT FGMLI H  D+       S   +DL AFY
Sbjct: 140 STVLGDAISRLLRVVGHEVLPHNHLGDWGTPFGMLIEHHLDE------PSGDRSDLNAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + ++++FD DE F  R+ + VV LQ  DPD    W+ + D S R F   Y +L +TLT+ 
Sbjct: 194 QAARRKFDADEAFATRSRERVVKLQSGDPDTLAFWQELVDESTRHFNAAYRQLGITLTDD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GESFY  ++ ++V  LE  G                         L + K+ G    
Sbjct: 254 DIYGESFYNPYLGEVVDELEADGLTEISDGAVCVFPEGFANREGDRLPLIVRKRDGGYGY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++YV    Q  HF ++   A+ AG L  +    + +GFG +
Sbjct: 314 AATDLATIRYWTAERGATDLLYVVGTPQAQHFAMIFAVARAAGWL--DGVHAEHIGFGSI 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D K  +TR+G+T+KL+ LLDE + ++ + + ++   +EL+  E  E  +AV  G +K
Sbjct: 372 LGADGKVMRTRAGETIKLANLLDEAVAQAAEVVAER---SELSEEEQREVARAVGIGAVK 428

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
           YADLS +R  DYVF +D+ML   GNT+VYL YA+ RI SI   AG   ++ P
Sbjct: 429 YADLSSDRERDYVFDWDRMLAKDGNTSVYLQYAHARIESILAKAGETDDNAP 480



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 94/176 (53%), Gaps = 11/176 (6%)

Query: 944  TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIAS 1003
            +EL+  E  E  +AV  G +KYADLS +R  DYVF +D+ML   GNT+VYL YA+ RI S
Sbjct: 408  SELSEEEQREVARAVGIGAVKYADLSSDRERDYVFDWDRMLAKDGNTSVYLQYAHARIES 467

Query: 1004 IARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYD 1063
            I   AG   ++        PV L+   E ALA TLLR ++ +   T     H LC YLYD
Sbjct: 468  ILAKAGETDDN-------APVVLQEPAERALALTLLRFSEAISAATSAYAPHKLCTYLYD 520

Query: 1064 ISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             +  FS FY+ C  +      +   +   R+ LA+ T++ + +   +L I    ++
Sbjct: 521  TAVTFSRFYEQCPVL----TAETPELRASRVQLAKLTSRTLVQGLALLGIEAPRRL 572



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 22/128 (17%)

Query: 50  DFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVN 109
           D+QCN AM+L K        K P ++A  I          N  L  V D+ E A PGF+N
Sbjct: 42  DYQCNLAMSLGKRLG-----KPPREVAAGIVE--------NLELDGVADRPEIAGPGFLN 88

Query: 110 VFLSRVY----AGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIH 165
             L R +      EQ +D   + +  P   +  RV +D+SSPN+A++      HL S + 
Sbjct: 89  FVLRREWLEQRVAEQARD---DRLGVPETEQPRRVALDYSSPNVAKE--MHVGHLRSTVL 143

Query: 166 DILISKAI 173
              IS+ +
Sbjct: 144 GDAISRLL 151


>gi|315506779|ref|YP_004085666.1| arginyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315413398|gb|ADU11515.1| arginyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 572

 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 129/328 (39%), Positives = 185/328 (56%), Gaps = 26/328 (7%)

Query: 246 DFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVN 305
           DFQ + A+ L +        + P +IA        +E+    +LA V   +EV+ PGF+N
Sbjct: 34  DFQSDAALGLARRLG-----QPPREIA--------AEVRERAALADVCAAVEVSGPGFLN 80

Query: 306 VFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           + ++    G  +  +  +   GV  P + +   V+VD+S PN+AKEMHVGHLRST+IGD 
Sbjct: 81  LTVAGHALGGLVSALAADPRLGV--PVVAEPETVVVDYSGPNVAKEMHVGHLRSTVIGDA 138

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
            +R LE+LGH V+R NH+GDWGT FGMLI HL D       +   + DL  FYK ++ +F
Sbjct: 139 AARTLEWLGHRVLRANHLGDWGTPFGMLIEHLLDLGEAGAAQELSMGDLDGFYKAARAKF 198

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           D+DE F++R+ Q VVALQ  DP   + W ++   S   F  +YD L+VTLT    RGES 
Sbjct: 199 DDDEAFRERSRQRVVALQGGDPATLRLWRLLVTQSEGYFLTVYDLLDVTLTGDDFRGESS 258

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +   V  L++ GLL   DG   ++     G D   +P+ + KSDGG+ Y  +DLAA
Sbjct: 259 YHDQLAPTVEELDRLGLLRRSDGADCVFPPGSVGRDGEPLPLIVRKSDGGYGYPATDLAA 318

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           +R R     A  ++YV  L Q  HF ++
Sbjct: 319 LRHRTGALGATRLLYVVGLPQRRHFEMV 346



 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/368 (37%), Positives = 194/368 (52%), Gaps = 61/368 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD  +R LE+LGH V+R NH+GDWGT FGMLI HL D       +   + DL  FY
Sbjct: 132 STVIGDAAARTLEWLGHRVLRANHLGDWGTPFGMLIEHLLDLGEAGAAQELSMGDLDGFY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           K ++ +FD+DE F++R+ Q VVALQ  DP   + W ++   S   F  +YD L+VTLT  
Sbjct: 192 KAARAKFDDDEAFRERSRQRVVALQGGDPATLRLWRLLVTQSEGYFLTVYDLLDVTLTGD 251

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSL--------------------------------- 708
             RGES Y    +QL P +E+   L L                                 
Sbjct: 252 DFRGESSYH---DQLAPTVEELDRLGLLRRSDGADCVFPPGSVGRDGEPLPLIVRKSDGG 308

Query: 709 --------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                         T  LG   ++YV  L Q  HF ++   A +AG L     R + VGF
Sbjct: 309 YGYPATDLAALRHRTGALGATRLLYVVGLPQRRHFEMVFAVAAQAGWLT-APARAEHVGF 367

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYG 811
           G +LG D +  ++R+G +VKL+ LL E ++R+    +++N   EL  +E +E  +AV  G
Sbjct: 368 GSILGPDGRMLRSRAGGSVKLAGLLTEAVQRATALARERN--PELGESEAAEVGRAVGVG 425

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPS 871
            IKYADLS +R+ DYV  +++ML   GNTA YL YAY+R+ SI R AG  +   P+ + S
Sbjct: 426 AIKYADLSGDRHKDYVLDWERMLSLDGNTAPYLQYAYSRVRSIFRRAGAAAR--PDAEVS 483

Query: 872 QSEVEDRC 879
            +E  +R 
Sbjct: 484 LAEPAERA 491



 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 101/180 (56%), Gaps = 11/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + R+ EL  +E +E  +AV  G IKYADLS +R+ DYV  +++ML   GNTA YL YAY+
Sbjct: 404  RERNPELGESEAAEVGRAVGVGAIKYADLSGDRHKDYVLDWERMLSLDGNTAPYLQYAYS 463

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ SI R AG        A     VSL    E ALA  L+    V+  V   L  H L  
Sbjct: 464  RVRSIFRRAGA------AARPDAEVSLAEPAERALAMELVGFAAVVEEVAGGLEFHRLTA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL+ ++ AFS FY+ C  +   AEG ++     RL+L + T +V+++  D+L IRT  ++
Sbjct: 518  YLHRLAVAFSAFYERCPVLR--AEGPVR---ESRLVLCDLTGRVLRQGLDLLGIRTPERL 572


>gi|261377586|ref|ZP_05982159.1| arginine--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269146334|gb|EEZ72752.1| arginine--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 572

 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 148/362 (40%), Positives = 201/362 (55%), Gaps = 33/362 (9%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  EVA PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LADNA----VIESAEVAGPGFI 82

Query: 305 NVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 363
           N+ L   +  + I   + +        +K   V++D+SSPN+AKEMHVGHLRS+IIGD+I
Sbjct: 83  NLRLRPEFLAQNIHAALNDARFGIAKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGDSI 142

Query: 364 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 423
           SR+LE++G+ VVR NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K RFD
Sbjct: 143 SRVLEFIGNTVVRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRAAKVRFD 200

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFY 480
           ED  F   A + VV LQ  D      W+   D+S    Q +YD L + L      GES Y
Sbjct: 201 EDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGESKY 260

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDLAAI 535
              ++ +V  L +KGL   DDG K+++ E+     G     IV K  GGF Y ++DLA +
Sbjct: 261 NDDLQPVVDDLVQKGLAVEDDGAKVVFLEEFKNKEGEPAAFIVQKQGGGFLYASTDLACL 320

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 595
           R RI   KAD ++YV D  Q +HF  L        T SR   YL  D  +   +G +GT 
Sbjct: 321 RYRIGRLKADRLLYVVDHRQALHFEQLF-------TTSRKASYLPED-AKAEFIG-FGTM 371

Query: 596 FG 597
            G
Sbjct: 372 MG 373



 Score =  222 bits (566), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 188/345 (54%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+LE++G+ VVR NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSISRVLEFIGNTVVRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L   
Sbjct: 193 RAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   ++ +V  L +KG                                     
Sbjct: 253 DVAGESKYNDDLQPVVDDLVQKGLAVEDDGAKVVFLEEFKNKEGEPAAFIVQKQGGGFLY 312

Query: 705 ---NLS-LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +L+ L  ++G      ++YV D  Q +HF  L   ++KA  L P   + +F+GFG +
Sbjct: 313 ASTDLACLRYRIGRLKADRLLYVVDHRQALHFEQLFTTSRKASYL-PEDAKAEFIGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL E + R+   +K+KN   EL   E  +  + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKN--PELGADEAEKIGKTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 430 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAG 474



 Score =  113 bits (283), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   E  +  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KEKNPELGADEAEKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG    D  V     P  L    E  LA  LL+  DVL  V      H+L  
Sbjct: 465  RVQSVFRKAG--EWDTTV-----PTVLTEPLEKQLAAELLKFEDVLQSVADTAYPHYLAA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY I+T FS FY+ C  ++  +EG  +     RL LA+ T   +K+  ++L I  +  M
Sbjct: 518  YLYQIATLFSRFYEACPILK--SEGATR---NSRLQLAKLTGDTLKQGLELLGIDVLDVM 572



 Score = 48.1 bits (113), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 16/126 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  E A PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LADNA----VIESAEVAGPGFI 82

Query: 109 NVFLSRVYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDI 167
           N+ L   +  + +   + +        +K   V++D+SSPN+A++      HL S I   
Sbjct: 83  NLRLRPEFLAQNIHAALNDARFGIAKTDKPQTVVIDYSSPNLAKE--MHVGHLRSSIIGD 140

Query: 168 LISKAI 173
            IS+ +
Sbjct: 141 SISRVL 146


>gi|322832419|ref|YP_004212446.1| arginyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|384257532|ref|YP_005401466.1| arginyl-tRNA synthetase [Rahnella aquatilis HX2]
 gi|321167620|gb|ADW73319.1| arginyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|380753508|gb|AFE57899.1| arginyl-tRNA synthetase [Rahnella aquatilis HX2]
          Length = 577

 Score =  226 bits (577), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 143/411 (34%), Positives = 220/411 (53%), Gaps = 51/411 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQSLLSEKVSQALIAA----GASADSEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L+ + +K+E+A PGF+N+FL   +    +   +   
Sbjct: 53  -MPPRQLAEKVVELL--------DLSGIANKVEIAGPGFINIFLDPAFVAAHVDSALNDE 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V+P T      +++D+S+PN+AKEMHVGH+RSTIIGD   R  E+LGH V+R N
Sbjct: 104 KLGITPVEPQT------IVIDYSAPNVAKEMHVGHIRSTIIGDAAVRTNEFLGHKVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       +ADL+ FY+ +KK +DEDE F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KVQNENAGDMNLADLEEFYRAAKKNYDEDEAFAERARGYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D    + W  + DV+ +  Q  Y+RLNVTLTE    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDEYCLQMWRKLVDVTMKQNQLTYNRLNVTLTEDDVMGESLYNSMLPGIVSDLQAKG 276

Query: 496 LLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L    +G  +++ +   ++   PM ++  K DGG+ Y T+D+A  + R E   AD ++Y 
Sbjct: 277 LAVDSEGAVVVYLDEYKNKEGDPMGVIIRKKDGGYLYTTTDIACAKYRYETLGADRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
            D  Q  H  L++       TI+R   Y+   V   +H+      FGM++ 
Sbjct: 337 IDSRQ--HQHLMQAW-----TIARKAGYVPDSVALEHHM------FGMMLG 374



 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/354 (40%), Positives = 188/354 (53%), Gaps = 53/354 (14%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R  E+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +ADL+ FY
Sbjct: 135 STIIGDAAVRTNEFLGHKVIRANHVGDWGTQFGMLIAYLE-KVQNENAGDMNLADLEEFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KK +DEDE F +RA   VV LQ  D    + W  + DV+ +  Q  Y+RLNVTLTE 
Sbjct: 194 RAAKKNYDEDEAFAERARGYVVKLQGGDEYCLQMWRKLVDVTMKQNQLTYNRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNSMLPGIVSDLQAKGLAVDSEGAVVVYLDEYKNKEGDPMGVIIRKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H       A+KAG + P+   ++   FG++
Sbjct: 314 TTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIARKAGYV-PDSVALEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TVKLS+LLDE + R+   + +KN   + T  EL +   AV  G IK
Sbjct: 373 LGKDGKPFKTRSGGTVKLSDLLDEAIDRARKLITEKNPEMKDT-GELEKLVNAVGIGAIK 431

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ASI + A I+     +P
Sbjct: 432 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKRADIDVNSLTQP 485



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 108/193 (55%), Gaps = 16/193 (8%)

Query: 934  LDKLKDKNRH--TELTPT-----ELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
            LD+  D+ R   TE  P      EL +   AV  G IKYADLS +R  DY+F +D ML  
Sbjct: 394  LDEAIDRARKLITEKNPEMKDTGELEKLVNAVGIGAIKYADLSKSRTTDYIFDWDNMLAF 453

Query: 987  RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
             GNTA Y+ YAYTR+ASI + A     D+ V + + PV L  E+E ALA  LL+  +VL 
Sbjct: 454  EGNTAPYMQYAYTRVASIFKRA-----DIDVNSLTQPVVLSEEREAALATRLLQFEEVLT 508

Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            +V R+   H +C YLYD++  FS FY++C  +  + E    T    RL LA  T + +K 
Sbjct: 509  VVAREGTPHTMCAYLYDVAGLFSSFYEHCPILNAEDE----TSRNSRLKLALLTQRTLKT 564

Query: 1107 CFDILNIRTVHKM 1119
              D L I TV +M
Sbjct: 565  GLDTLGIETVERM 577



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LS+  + A+  A    G    S A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQSLLSEKVSQALIAA----GASADSEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++         L+ + +K+E A PGF+N+FL   +    +   +   
Sbjct: 53  -MPPRQLAEKVVELL--------DLSGIANKVEIAGPGFINIFLDPAFVAAHVDSALNDE 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V+P T      +++D+S+PN+A++
Sbjct: 104 KLGITPVEPQT------IVIDYSAPNVAKE 127


>gi|398856867|ref|ZP_10612581.1| arginyl-tRNA synthetase [Pseudomonas sp. GM79]
 gi|398242261|gb|EJN27881.1| arginyl-tRNA synthetase [Pseudomonas sp. GM79]
          Length = 578

 Score =  226 bits (577), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 155/407 (38%), Positives = 220/407 (54%), Gaps = 49/407 (12%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V ++ +K   K GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQAITQLVNEGVLPEGLSPAIQVENSRDK---KNGDFASNIAMMLAK---PAGM 57

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQIK 318
           K  P D+A+ I + + ++        + + K E+A PGF+N F       +R+ A     
Sbjct: 58  K--PRDLAEKIIAALPAD--------ENVSKAEIAGPGFLNFFQNTQALATRLDAALADD 107

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            I V    P       R +VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG +V+R N
Sbjct: 108 HIGVRKAGPVQ-----RTVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDEVIRQN 162

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY+ +K+RFDE   F  RA   VV 
Sbjct: 163 HVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFYRAAKQRFDESAEFADRARGLVVK 218

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  DPD    W    D+S    QKIY+ LNV LT     GES Y   +  +V  L+  G
Sbjct: 219 LQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMADVMGESAYNDDLINVVNDLKAAG 278

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           LL   +G + ++       D   +P+ IVK+DGG+ Y T+DLAA+R R    KAD  +Y 
Sbjct: 279 LLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLYATTDLAAVRYRSGVLKADRALYF 338

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            D  Q +HF+ + +       ++RL  ++ H  + + H+G +GT  G
Sbjct: 339 VDQRQALHFQQVFQ-------VARLAGFVTHP-MEMEHMG-FGTMNG 376



 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/345 (39%), Positives = 183/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDEVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA   VV LQ  DPD    W    D+S    QKIY+ LNV LT  
Sbjct: 196 RAAKQRFDESAEFADRARGLVVKLQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+  G L                                   
Sbjct: 256 DVMGESAYNDDLINVVNDLKAAGLLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLY 315

Query: 707 ------SLTKKLGI------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                 ++  + G+      +Y  D  Q +HF+ + + A+ AG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGVLKADRALYFVDQRQALHFQQVFQVARLAGFVT-HPMEMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN   EL   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAQERAYTLVKEKN--PELAEDELRNIAKVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 93/167 (55%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   EL    + V  G +KYADLS +R  DY F+FD ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPELAEDELRNIAKVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G +  ++        ++LE   E  LA  L +  ++L  V+     H LC 
Sbjct: 468  RVAGVFRKLGKDFSEVE-----GQIALEAPHEHELAAKLAQFGEILNNVSDKGTPHILCT 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  D   ++++    RL LA  T + +K+
Sbjct: 523  YLYDVAGLFSSFYENCPILGADTPAQMQS----RLRLAALTGRTLKQ 565


>gi|419930580|ref|ZP_14448178.1| arginyl-tRNA synthetase, partial [Escherichia coli 541-1]
 gi|388399972|gb|EIL60746.1| arginyl-tRNA synthetase, partial [Escherichia coli 541-1]
          Length = 351

 Score =  226 bits (577), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 129/328 (39%), Positives = 185/328 (56%), Gaps = 28/328 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  + ++  + +        +K  ++VD+S+PN+AKEMHVGHLRSTIIGD 
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLDVATPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDA 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
             R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY+++KK +
Sbjct: 142 AVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEM-ELADLEGFYRDAKKHY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSD 531
           Y   +  +V  L+ KGL    +G  +++        GE  G I   I K DGG+ Y T+D
Sbjct: 261 YNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVI---IQKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHF 559
           +A  + R E   AD ++Y  D  Q  H 
Sbjct: 318 IACAKYRYETLHADRVLYYIDSRQHQHL 345



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 91/143 (63%), Gaps = 4/143 (2%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAWLEKQQQENAGEME-LADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RDAKKHYDEDEEFAERARNYVVKLQSGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG 704
              GES Y   +  +V  L+ KG
Sbjct: 254 DVMGESLYNPMLPGIVADLKAKG 276



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLNGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  + ++  + +        +K  ++VD+S+PN+A++
Sbjct: 82  FINIFLDPAFLADHVQQALASDRLDVATPEKQTIVVDYSAPNVAKE 127


>gi|308051227|ref|YP_003914793.1| arginyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
 gi|307633417|gb|ADN77719.1| arginyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
          Length = 582

 Score =  226 bits (577), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 137/350 (39%), Positives = 190/350 (54%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD ++R LE+LGH+VVR NH+GDWGTQFGMLIA+L+ K  +       ++DL+AFY
Sbjct: 140 STVIGDAVTRTLEFLGHNVVRANHIGDWGTQFGMLIAYLE-KMENESAADMDLSDLEAFY 198

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DED  F +RA   VV LQ  D      W  + D++    Q IYDRL V+L+  
Sbjct: 199 REAKKCYDEDGEFAERARNYVVKLQGGDEYCNAMWRKLVDITMAQNQAIYDRLGVSLSND 258

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   + ++V  L K+G                         + + K+ G    
Sbjct: 259 DIMGESLYNPMLPEIVADLTKQGLAVEDQGAKVVFLDEFKGKDGNPMGVIIQKRDGGFLY 318

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              I+Y  D  Q  H +     A+KAG L P+ T  +   FG++
Sbjct: 319 TTTDIAAAKYRVDTFAADRILYFIDSRQAQHLQQAWLIARKAGYL-PDTTTTEHCAFGMM 377

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TVKL++LL+E  +R+   + +KN   +L    L      VA   +K
Sbjct: 378 LGKDGKPFKTRSGGTVKLADLLEEAHQRATKLIGEKN--PDLQGDALDTIAATVAMASVK 435

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           Y+DLS NR  DYVF +D ML   GNTA Y+LYA++RI SI R AG+N+ +
Sbjct: 436 YSDLSKNRTTDYVFDWDNMLTFEGNTAPYMLYAFSRIQSIFRKAGVNAAE 485



 Score =  226 bits (575), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 148/397 (37%), Positives = 216/397 (54%), Gaps = 43/397 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K        KNP ++A  I          N   + ++ K E+A PGF+
Sbjct: 41  GDLATNLAMMLAK-----PAGKNPRELAGLIID--------NLPESTLVAKTEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N FL   + G+QI+ I  +    V P  +     ++ D+S+PN+AKEM V H+RST+IGD
Sbjct: 88  NFFLDAGWLGKQIETIASDDRANVAP--IAAPQTIVTDYSAPNVAKEMAVHHIRSTVIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R LE+LGH+VVR NH+GDWGTQFGMLIA+L+ K  +       ++DL+AFY+E+KK 
Sbjct: 146 AVTRTLEFLGHNVVRANHIGDWGTQFGMLIAYLE-KMENESAADMDLSDLEAFYREAKKC 204

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           +DED  F +RA   VV LQ  D      W  + D++    Q IYDRL V+L+     GES
Sbjct: 205 YDEDGEFAERARNYVVKLQGGDEYCNAMWRKLVDITMAQNQAIYDRLGVSLSNDDIMGES 264

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + ++V  L K+GL   D G K+++     G+D   + + I K DGGF Y T+D+A
Sbjct: 265 LYNPMLPEIVADLTKQGLAVEDQGAKVVFLDEFKGKDGNPMGVIIQKRDGGFLYTTTDIA 324

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
           A + R++   AD I+Y  D  Q  H   L+++ +    I+R   YL  D     H     
Sbjct: 325 AAKYRVDTFAADRILYFIDSRQAQH---LQQAWL----IARKAGYL-PDTTTTEHCA--- 373

Query: 594 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
             FGM++   +D  P + T+S     L    +E+ +R
Sbjct: 374 --FGMMLG--KDGKP-FKTRSGGTVKLADLLEEAHQR 405



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 98/178 (55%), Gaps = 8/178 (4%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ +L    L      VA   +KY+DLS NR  DYVF +D ML   GNTA Y+LYA++RI
Sbjct: 413  KNPDLQGDALDTIAATVAMASVKYSDLSKNRTTDYVFDWDNMLTFEGNTAPYMLYAFSRI 472

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             SI R AG+N+ +L     +  V L H+KE ALA+ L++ ND +  V      H +C YL
Sbjct: 473  QSIFRKAGVNAAEL-----NGTVVLAHDKEEALAQKLVQFNDAVQGVANKGMPHLMCTYL 527

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++ AF  FY+ C   + D     K     RL L  ATA  +K    +L I T+ +M
Sbjct: 528  YELAGAFMSFYEACPINKDDVAEDAK---ASRLRLCAATANTLKVGLGLLGINTLDRM 582


>gi|300717101|ref|YP_003741904.1| arginyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299062937|emb|CAX60057.1| Arginyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 576

 Score =  226 bits (577), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/337 (38%), Positives = 195/337 (57%), Gaps = 30/337 (8%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+        E+  +  L  +  K+E+A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----MAPRQLAE--------EVLKHLDLTGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL + +   Q+  +      GV P        V++D+S+PN+AKEMHVGH+RSTII
Sbjct: 82  FINLFLDKQWLSAQVDAVTAAPRLGVAPVAPQT---VVIDYSAPNVAKEMHVGHVRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  ++  +   +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAFLEKQQNEH-HEEHALADLEVFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
           + +DED  F +RA   VV LQ  D   +  W+ + D++    Q IYDR+NVTL+ +   G
Sbjct: 198 RTYDEDPAFAERARGYVVKLQGGDEYCRTMWKKLVDITMAQNQIIYDRMNVTLSRKDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L  KGL    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNDMLPGIVADLTAKGLAVQSEGATVVFLDEYKNKDGDPMGVIIKKKDGGYLYTTTD 317

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTII 568
           +A  + R E  KAD ++Y  D  Q  H  L++  TI+
Sbjct: 318 IACAKYRYETLKADRVLYYIDCRQ--HQHLMQAWTIV 352



 Score =  219 bits (559), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 186/347 (53%), Gaps = 54/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA L+ +  ++  +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAFLEKQQNEH-HEEHALADLEVFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K+ +DED  F +RA   VV LQ  D   +  W+ + D++    Q IYDR+NVTL+ +
Sbjct: 194 REAKRTYDEDPAFAERARGYVVKLQGGDEYCRTMWKKLVDITMAQNQIIYDRMNVTLSRK 253

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L  KG                         + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVADLTAKGLAVQSEGATVVFLDEYKNKDGDPMGVIIKKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLKADRVLYYIDCRQHQHLMQAWTIVRKAGYV-PESVPLEHHAFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T+KLS+LLDE + R+   + +KN   ++   EL     +V  G IK
Sbjct: 373 LGKDGKPFKTRAGGTIKLSDLLDEAVERATKLVGEKN--PDMPADELKALANSVGIGAIK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGI+
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGID 477



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 101/178 (56%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL     +V  G IKYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELKALANSVGIGAIKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
             S+ R AGI+   +   AQ     +  ++E ALA  LL+  + +  V RD   H +C YL
Sbjct: 468  LSVFRKAGIDETGVTGNAQ-----IVEDREAALAVRLLQFEETITQVARDGTPHVMCAYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D E   ++    RL LA  TAK +K+  D L I TV +M
Sbjct: 523  YDLAGLFSGFYEHCPILTADDEATKQS----RLKLALLTAKTLKQGLDTLGIDTVERM 576



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+        E+  +  L  +  K+E A PG
Sbjct: 35  QFGDYQANGIMAVAKKLG-----MAPRQLAE--------EVLKHLDLTGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL + +   Q+  +      GV P        V++D+S+PN+A++
Sbjct: 82  FINLFLDKQWLSAQVDAVTAAPRLGVAPVAPQT---VVIDYSAPNVAKE 127


>gi|319637713|ref|ZP_07992479.1| arginyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317400868|gb|EFV81523.1| arginyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 572

 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 137/327 (41%), Positives = 191/327 (58%), Gaps = 24/327 (7%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  EVA PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LADNA----VIESAEVAGPGFI 82

Query: 305 NVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 363
           N+ LS  +  + I+  + +        +K   V++D+SSPN+AKEMHVGHLRS+IIGD+I
Sbjct: 83  NLRLSPEFLAQNIQTALNDARFGIAKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGDSI 142

Query: 364 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 423
           SR+LE++G++V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K RFD
Sbjct: 143 SRVLEFMGNNVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRAAKVRFD 200

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFY 480
           ED  F   A + VV LQ  D      W+   D+S    Q +YD L + L      GES Y
Sbjct: 201 EDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGESKY 260

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDLAAI 535
              ++ +V  L +KGL   DDG K+++ ++     G     IV K  GGF Y ++DLA +
Sbjct: 261 NDDLQPVVDDLVQKGLAIEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLACL 320

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFRLL 562
           R RI   KAD ++YV D  Q +HF  L
Sbjct: 321 RYRIGRLKADRLLYVVDHRQALHFEQL 347



 Score =  226 bits (575), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 190/345 (55%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+LE++G++V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSISRVLEFMGNNVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L   
Sbjct: 193 RAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   ++ +V  L +KG                                     
Sbjct: 253 DVAGESKYNDDLQPVVDDLVQKGLAIEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLY 312

Query: 705 ---NLS-LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +L+ L  ++G      ++YV D  Q +HF  L   ++KAG L P   + +F+GFG +
Sbjct: 313 ASTDLACLRYRIGRLKADRLLYVVDHRQALHFEQLFTTSRKAGYL-PEHAKAEFIGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL E + R+   +K+KN   EL   E  +  + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKN--PELGADEAGKIGKTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 430 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAG 474



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   E  +  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KEKNPELGADEAGKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG           + P  L    E  LA  LL+  DVL  V   +  H+L  
Sbjct: 465  RVQSVFRKAGEWD-------ATAPTVLTEPLEKQLAAELLKFEDVLQSVADTVYPHYLAA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY I+T FS FY+ C  ++  +EG  +     RL LA+ T   +K+  ++L I  +  M
Sbjct: 518  YLYQIATLFSRFYEACPILK--SEGATR---NSRLQLAKLTGDTLKQGLELLGIDVLDVM 572



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 16/126 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  E A PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LADNA----VIESAEVAGPGFI 82

Query: 109 NVFLSRVYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDI 167
           N+ LS  +  + ++  + +        +K   V++D+SSPN+A++      HL S I   
Sbjct: 83  NLRLSPEFLAQNIQTALNDARFGIAKTDKPQTVVIDYSSPNLAKE--MHVGHLRSSIIGD 140

Query: 168 LISKAI 173
            IS+ +
Sbjct: 141 SISRVL 146


>gi|261343877|ref|ZP_05971522.1| arginine--tRNA ligase [Providencia rustigianii DSM 4541]
 gi|282568263|gb|EFB73798.1| arginine--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 576

 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 166/523 (31%), Positives = 256/523 (48%), Gaps = 66/523 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAILSDKVSAAMLAA----GAPEGCDALVRQSAKAQFGDYQANGVMGAAKKMG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
              P  +A+ I S        +  L  +  K+E+A PGF+N+F+   +     +  + + 
Sbjct: 53  -MPPRQLAEQIVS--------HLDLEGIATKVEIAGPGFINIFIDPTWVATYAEQALTSD 103

Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
             G+ P    K   +++D+S+PN+AK+MHVGHLRSTIIGD  +R  E+LGH V+R NHVG
Sbjct: 104 RLGIAPV---KPETIVIDYSAPNVAKQMHVGHLRSTIIGDAAARTQEFLGHKVIRANHVG 160

Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
           DWGTQFGMLIA+L+ K  +       +ADL+AFY+E+KK +DEDE F  RA   VV LQ 
Sbjct: 161 DWGTQFGMLIAYLE-KVQNEDASDMALADLEAFYREAKKHYDEDEDFAVRARGYVVKLQS 219

Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE 498
            D   +K W  + D++ +  Q+ Y RLNVTLTE    GES Y   +  +V  L+ KGL  
Sbjct: 220 GDEYCRKMWRKLVDITMQQNQETYHRLNVTLTEDDVMGESLYNSMLPGIVADLKAKGLAV 279

Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
             +G  +++ +   ++   PM ++  K DGG+ Y T+D+A  + R E   AD  +Y  D 
Sbjct: 280 ESEGATVVFLDEFKNKEGEPMGVIVQKKDGGYLYTTTDIACAKYRYETLHADRSLYYIDS 339

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 613
            Q  H  L++  TI+     R   Y+   +   +H+      FGM++      F      
Sbjct: 340 RQ--HQHLMQAWTIV-----RKAGYIPESMALEHHM------FGMMLGKDGKPFKTRSGG 386

Query: 614 SPPIADL--------QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDV 665
           +  ++DL        Q   +E      EDE+        + A++              D+
Sbjct: 387 TVRLSDLLDEAVERAQTLIREKNPDMPEDELLNLANVVGIGAVK------------YADL 434

Query: 666 SR-RDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLS 707
           S+ R    I+D  N+   E   + Y ++    V  + KK N++
Sbjct: 435 SKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKKANIT 477



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/354 (39%), Positives = 186/354 (52%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R  E+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +ADL+AFY
Sbjct: 135 STIIGDAAARTQEFLGHKVIRANHVGDWGTQFGMLIAYLE-KVQNEDASDMALADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F  RA   VV LQ  D   +K W  + D++ +  Q+ Y RLNVTLTE 
Sbjct: 194 REAKKHYDEDEDFAVRARGYVVKLQSGDEYCRKMWRKLVDITMQQNQETYHRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNSMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGEPMGVIVQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLHADRSLYYIDSRQHQHLMQAWTIVRKAGYI-PESMALEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG TV+LS+LLDE + R+   +++KN   ++   EL      V  G +K
Sbjct: 373 LGKDGKPFKTRSGGTVRLSDLLDEAVERAQTLIREKN--PDMPEDELLNLANVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ASI + A I   D   P
Sbjct: 431 YADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASIFKKANITEADLTLP 484



 Score =  130 bits (327), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 105/191 (54%), Gaps = 11/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             + R+   +++KN   ++   EL      V  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  AVERAQTLIREKN--PDMPEDELLNLANVVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ASI + A I   DL     + P+ LE   E  LA  L++  + ++ V
Sbjct: 455  NTAPYMQYAYTRVASIFKKANITEADL-----TLPIVLEAPHEIVLATRLMQFEETILTV 509

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             RD   H +C YLYD++  FS FY++C  +  D + + ++    RL LA  T K +K   
Sbjct: 510  ARDGTPHVMCAYLYDLAGLFSSFYEHCPILSADNDAQRQS----RLKLALLTQKTLKVGL 565

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 566  DTLGIETVERM 576



 Score = 47.8 bits (112), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 23/147 (15%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  M   K       
Sbjct: 1   MNIQAILSDKVSAAMLAA----GAPEGCDALVRQSAKAQFGDYQANGVMGAAKKMG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
              P  +A+ I S        +  L  +  K+E A PGF+N+F+   +     +  + + 
Sbjct: 53  -MPPRQLAEQIVS--------HLDLEGIATKVEIAGPGFINIFIDPTWVATYAEQALTSD 103

Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARK 152
             G+ P    K   +++D+S+PN+A++
Sbjct: 104 RLGIAPV---KPETIVIDYSAPNVAKQ 127


>gi|405968922|gb|EKC33946.1| Arginyl-tRNA synthetase, cytoplasmic [Crassostrea gigas]
          Length = 223

 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 140/192 (72%), Gaps = 1/192 (0%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            G+ R+  KL +K R  ELT  EL   ++AVAYGCIKYADLSHNRN DYVFSFDKMLDDRG
Sbjct: 32   GISRAEQKLVEKGRDKELTKEELEAVKRAVAYGCIKYADLSHNRNHDYVFSFDKMLDDRG 91

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA YLLYA TRI SIAR + I+ EDL+ AA++T + L H KE+ LAK +LR+ +V++  
Sbjct: 92   NTAAYLLYALTRIRSIARNSNISQEDLKQAARTTRIDLGHPKEWKLAKCILRLPEVILRC 151

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKD-AEGKIKTVHTGRLLLAEATAKVMKKC 1107
              DL LH LCEYLY++S  F+EFYD+CYCIEKD A G I  V+  RLLL EATA V+   
Sbjct: 152  LDDLLLHTLCEYLYELSNTFTEFYDSCYCIEKDKATGAIVKVNMSRLLLCEATANVIATG 211

Query: 1108 FDILNIRTVHKM 1119
            F +L I  + KM
Sbjct: 212  FHVLGINPLEKM 223



 Score =  154 bits (388), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 87/110 (79%)

Query: 759 RKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADL 818
           +KKFKTRSGDTV+L +LLDEG+ R+  KL +K R  ELT  EL   ++AVAYGCIKYADL
Sbjct: 12  QKKFKTRSGDTVRLVDLLDEGISRAEQKLVEKGRDKELTKEELEAVKRAVAYGCIKYADL 71

Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           SHNRN DYVFSFDKMLDDRGNTA YLLYA TRI SIAR + I+ ED  + 
Sbjct: 72  SHNRNHDYVFSFDKMLDDRGNTAAYLLYALTRIRSIARNSNISQEDLKQA 121


>gi|398998188|ref|ZP_10700967.1| arginyl-tRNA synthetase [Pseudomonas sp. GM21]
 gi|398120849|gb|EJM10493.1| arginyl-tRNA synthetase [Pseudomonas sp. GM21]
          Length = 578

 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 204/370 (55%), Gaps = 40/370 (10%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V ++ +K   K GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQAITQLVNEGVLPEGLSPAIQVENSRDK---KNGDFASNIAMMLAK---PAGM 57

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQIK 318
           K  P D+A+ I + + ++        + + K E+A PGF+N F       +R+ A     
Sbjct: 58  K--PRDLAEKIIAALPAD--------ENVSKTEIAGPGFLNFFQNTEALATRLDAALADA 107

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            I V    P       R +VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG +V+R N
Sbjct: 108 HIGVRKAGPVQ-----RTVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDEVIRQN 162

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY+ +K+RFDE E F  RA   VV 
Sbjct: 163 HVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFYRAAKQRFDESEEFADRARGLVVK 218

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  DPD    W    D+S    QKIY+ LNV LT     GES Y   +  +V  L+  G
Sbjct: 219 LQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMADVMGESAYNDDLINVVNDLKAAG 278

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           +L   +G + ++       D   +P+ IVK+DGG+ Y T+DLAA+R R  + KAD  +Y 
Sbjct: 279 MLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLYATTDLAAVRYRSGKLKADRALYF 338

Query: 551 TDLGQGVHFR 560
            D  Q +HF+
Sbjct: 339 VDQRQALHFQ 348



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/345 (40%), Positives = 184/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDEVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE E F  RA   VV LQ  DPD    W    D+S    QKIY+ LNV LT  
Sbjct: 196 RAAKQRFDESEEFADRARGLVVKLQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
              GES Y   +  +V  L+  G L  +     V++                        
Sbjct: 256 DVMGESAYNDDLINVVNDLKAAGMLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLY 315

Query: 718 --TDLG---------------------QGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
             TDL                      Q +HF+ +   A+KAG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGKLKADRALYFVDQRQALHFQQVFAVARKAGFVT-HPMEMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G+D + FKTR G TVKL +LL E   R+   +KDKN   EL   EL    + V  G +K
Sbjct: 375 NGKDGRPFKTRDGGTVKLIDLLTEAQERAYTLVKDKN--PELADDELRNIAKVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  114 bits (286), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 96/175 (54%), Gaps = 11/175 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   +KDKN   EL   EL    + V  G +KYADLS +R  DY F+FD ML+  GNTA
Sbjct: 402  RAYTLVKDKN--PELADDELRNIAKVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTA 459

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A + R  G +  ++        + LE   E  LA  L +  ++L  V+  
Sbjct: 460  PYLLYAYTRVAGVFRKLGKDFTEVE-----GQIVLEAAHEHELAAKLAQFGEILNNVSDK 514

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
               H LC YLYD++  FS FY+NC  +  D   ++++    RL LA  T + +K+
Sbjct: 515  GTPHILCTYLYDVAGLFSSFYENCPILSADTPAQMQS----RLRLAALTGRTLKQ 565


>gi|261365442|ref|ZP_05978325.1| arginine--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288566109|gb|EFC87669.1| arginine--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 572

 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 147/364 (40%), Positives = 201/364 (55%), Gaps = 37/364 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  EVA PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LAGNA----VIESAEVAGPGFI 82

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N+ L   +  + I   + +   GV     +K   V++D+SSPN+AKEMHVGHLRS+IIGD
Sbjct: 83  NLRLRPEFLAQNIHTALNDTRFGV--AKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGD 140

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
           +ISR+LE++G+ VVR NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K R
Sbjct: 141 SISRVLEFMGNTVVRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRAAKVR 198

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GES 478
           FDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L      GES
Sbjct: 199 FDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGES 258

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   ++ +V  L +KGL   DDG K+++      +D       + K  GGF Y ++DLA
Sbjct: 259 KYNDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKDGEPAAFIVQKQGGGFLYASTDLA 318

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
            +R RI   KAD ++YV D  Q +HF  L        T SR   YL  D  +   +G +G
Sbjct: 319 CLRYRIGRLKADRLLYVVDHRQALHFEQLF-------TTSRKAGYLPED-AKAEFIG-FG 369

Query: 594 TQFG 597
           T  G
Sbjct: 370 TMMG 373



 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/345 (40%), Positives = 190/345 (55%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+LE++G+ VVR NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSISRVLEFMGNTVVRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L   
Sbjct: 193 RAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   ++ +V  L +KG                                     
Sbjct: 253 DVAGESKYNDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKDGEPAAFIVQKQGGGFLY 312

Query: 705 ---NLS-LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +L+ L  ++G      ++YV D  Q +HF  L   ++KAG L P   + +F+GFG +
Sbjct: 313 ASTDLACLRYRIGRLKADRLLYVVDHRQALHFEQLFTTSRKAGYL-PEDAKAEFIGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL E + R+   +K+KN   EL   E ++  + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKN--PELGADEAAKIGKTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 430 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAG 474



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   E ++  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG    +  V A   P  L    E  LA  LL+  DVL  V      H+L  
Sbjct: 465  RVQSVFRKAG----EWDVTA---PTVLTEPLEKQLAAELLKFEDVLQSVADTAYPHYLAA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY  +T FS FY+ C  ++  +EG  +     RL LA+ T   +K+  D+L I  +  M
Sbjct: 518  YLYQTATLFSRFYEACPILK--SEGATR---NSRLQLAKLTGDTLKQGLDLLGIDVLDVM 572



 Score = 48.9 bits (115), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 20/128 (15%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  E A PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LAGNA----VIESAEVAGPGFI 82

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIH 165
           N+ L   +  + +   + +   GV     +K   V++D+SSPN+A++      HL S I 
Sbjct: 83  NLRLRPEFLAQNIHTALNDTRFGV--AKTDKPQTVVIDYSSPNLAKE--MHVGHLRSSII 138

Query: 166 DILISKAI 173
              IS+ +
Sbjct: 139 GDSISRVL 146


>gi|398939121|ref|ZP_10668340.1| arginyl-tRNA synthetase [Pseudomonas sp. GM41(2012)]
 gi|398164757|gb|EJM52887.1| arginyl-tRNA synthetase [Pseudomonas sp. GM41(2012)]
          Length = 578

 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 154/407 (37%), Positives = 220/407 (54%), Gaps = 49/407 (12%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V ++ +K     GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQAITQLVNEGVLPEGLSPAIQVENSRDK---THGDFASNIAMMLAK---PAGM 57

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQIK 318
           K  P D+A+ I + + ++        + + K E+A PGF+N F       +R+ A     
Sbjct: 58  K--PRDLAEKIIAALPAD--------ENVTKTEIAGPGFLNFFQNTQALATRLDAALADD 107

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            I V    P       R +VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG +V+R N
Sbjct: 108 HIGVRKAGPVQ-----RTVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDEVIRQN 162

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY+ +K+RFDE   F  RA   VV 
Sbjct: 163 HVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFYRAAKQRFDESAEFADRARGLVVK 218

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  DPD    W    D+S    QKIY+ LNV LT     GES Y   +  +V  L+  G
Sbjct: 219 LQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMADVMGESAYNDDLINVVNDLKAAG 278

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           LL   +G + ++       D   +P+ IVK+DGG+ Y T+DLAA+R R  + KAD  +Y 
Sbjct: 279 LLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLYATTDLAAVRYRSGKLKADRALYF 338

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            D  Q +HF+ + +       ++RL  ++ H  + + H+G +GT  G
Sbjct: 339 VDQRQALHFQQVFQ-------VARLAGFVTHP-MEMEHMG-FGTMNG 376



 Score =  211 bits (537), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/345 (39%), Positives = 179/345 (51%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDEVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA   VV LQ  DPD    W    D+S    QKIY+ LNV LT  
Sbjct: 196 RAAKQRFDESAEFADRARGLVVKLQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKK----------------------------------GNLS 707
              GES Y   +  +V  L+                                    G L 
Sbjct: 256 DVMGESAYNDDLINVVNDLKAAGLLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLY 315

Query: 708 LTKKLGIV-------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T  L  V             Y  D  Q +HF+ + + A+ AG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGKLKADRALYFVDQRQALHFQQVFQVARLAGFVT-HPMEMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN    L   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAQERAYTLVKEKN--PTLAEDELRNIAKVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  110 bits (276), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 90/167 (53%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++  L   EL    + V  G +KYADLS +R  DY F+FD ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPTLAEDELRNIAKVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G +  ++        + LE   E  LA  L +  +VL  V      H LC 
Sbjct: 468  RVAGVFRKLGKDFSEVE-----GQIVLEAAHEHELAAKLAQFGEVLNNVCDKGTPHILCT 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  D   ++++    RL LA  T + +K+
Sbjct: 523  YLYDVAGLFSSFYENCPILSADTPAQMQS----RLRLAALTGRTLKQ 565


>gi|171473734|gb|ACB47040.1| putative class Ic arginyl-tRNA synthetase [Micromonospora chersina]
          Length = 572

 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 132/328 (40%), Positives = 185/328 (56%), Gaps = 26/328 (7%)

Query: 246 DFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVN 305
           DFQ + A+AL +        + P  IA        +E+     LA +    EV+ PGF+N
Sbjct: 34  DFQSDAALALARRLG-----RPPRAIA--------TEVLERAELADLCSATEVSGPGFLN 80

Query: 306 VFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           + ++       +  +  +   GV  P       V+VD+S+PN+AKEMHVGHLRST+IGD 
Sbjct: 81  LTVADDALAGLVSALAADPRLGV--PEAAAPETVVVDYSAPNVAKEMHVGHLRSTVIGDA 138

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
            +RLLE+LGH V+R NH+GDWGT FGMLI HL D       +   + DL +FYK ++ +F
Sbjct: 139 AARLLEWLGHRVLRANHLGDWGTPFGMLIEHLVDLGEAEAAQELSMGDLDSFYKAARAKF 198

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           D DE F++RA Q VVALQ  D    + W ++ + S R F  +YD L+VTLTER   GES 
Sbjct: 199 DADEAFRERARQRVVALQGGDATTLRLWRLLVEQSERYFLTVYDLLDVTLTERDFHGESS 258

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
           Y   +  +V  L++ GLL   DG   ++     G D   +P+ + KSDGG+ Y  +DLAA
Sbjct: 259 YNDLLGPVVEDLDRLGLLRSSDGAACVFPPGSVGRDGEPLPLIVRKSDGGYGYPATDLAA 318

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           IR R     A  ++YV  L Q  HF ++
Sbjct: 319 IRHRTGTLGATRLLYVVGLPQRRHFEMV 346



 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 193/362 (53%), Gaps = 58/362 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD  +RLLE+LGH V+R NH+GDWGT FGMLI HL D       +   + DL +FY
Sbjct: 132 STVIGDAAARLLEWLGHRVLRANHLGDWGTPFGMLIEHLVDLGEAEAAQELSMGDLDSFY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K ++ +FD DE F++RA Q VVALQ  D    + W ++ + S R F  +YD L+VTLTER
Sbjct: 192 KAARAKFDADEAFRERARQRVVALQGGDATTLRLWRLLVEQSERYFLTVYDLLDVTLTER 251

Query: 685 ---GESFYQKHMEQLVPYLEKKGNLS---------------------------------- 707
              GES Y   +  +V  L++ G L                                   
Sbjct: 252 DFHGESSYNDLLGPVVEDLDRLGLLRSSDGAACVFPPGSVGRDGEPLPLIVRKSDGGYGY 311

Query: 708 ----------LTKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                      T  LG   ++YV  L Q  HF ++   A +AG L P   R + VGFG +
Sbjct: 312 PATDLAAIRHRTGTLGATRLLYVVGLPQRRHFEMVYAAAAQAGWLAP-PARAEHVGFGSI 370

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG D +  ++R+  +VKL  LL+E + R+    +++N   EL   E +E  +AV  G +K
Sbjct: 371 LGPDGRMLRSRASGSVKLVGLLEEAVARATALARERN--PELGEAEAAEVGRAVGIGAVK 428

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP----DP 870
           YADLS +R+ DYV  +++ML   GN+A YL YA++RI SI R AG+ +  P  P    DP
Sbjct: 429 YADLSSDRHKDYVLDWERMLSLDGNSAPYLQYAHSRIRSIFRRAGVAAR-PEAPVSLVDP 487

Query: 871 SQ 872
           ++
Sbjct: 488 AE 489



 Score =  119 bits (299), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 100/180 (55%), Gaps = 11/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + R+ EL   E +E  +AV  G +KYADLS +R+ DYV  +++ML   GN+A YL YA++
Sbjct: 404  RERNPELGEAEAAEVGRAVGIGAVKYADLSSDRHKDYVLDWERMLSLDGNSAPYLQYAHS 463

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI R AG+       A    PVSL    E ALA  L+    V+  V  +L  HHL  
Sbjct: 464  RIRSIFRRAGV------AARPEAPVSLVDPAERALAFELVGFGAVVGAVAENLEFHHLTA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
             L  ++ AFS FY+ C  +  D     + V   RL+L + TA+V+++   +L IRT  ++
Sbjct: 518  CLSRLAAAFSAFYERCPVLRAD-----EPVRESRLVLCDLTARVLRQGLHLLGIRTPERL 572


>gi|398839751|ref|ZP_10596995.1| arginyl-tRNA synthetase [Pseudomonas sp. GM102]
 gi|398112113|gb|EJM01981.1| arginyl-tRNA synthetase [Pseudomonas sp. GM102]
          Length = 626

 Score =  226 bits (576), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 154/407 (37%), Positives = 219/407 (53%), Gaps = 49/407 (12%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V ++ +K   K GDF  N AM L K     G 
Sbjct: 52  TIRQLIQQAITQLVNEGVLPEGLSPAIQVENSRDK---KNGDFASNIAMMLAK---PAGM 105

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQIK 318
           K  P D+A+ I + + ++        + + K E+A PGF+N F       +R+ A     
Sbjct: 106 K--PRDLAEKIIAALPAD--------ENVTKAEIAGPGFLNFFQNTQALATRLDAALADD 155

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            I V    P       R +VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG +V+R N
Sbjct: 156 HIGVRKAGPVQ-----RTVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDEVIRQN 210

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+LQ+        S  ++DL+ FY+ +K+RFDE   F  RA   VV 
Sbjct: 211 HVGDWGTQFGMLMAYLQEN----PITSDELSDLENFYRAAKQRFDESAEFADRARGLVVK 266

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  DPD    W    D+S    QKIY+ LNV LT     GES Y   +  +V  L+  G
Sbjct: 267 LQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMADVMGESAYNDDLINVVNDLKAAG 326

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           LL   +G + ++       D   +P+ IVK+DGG+ Y T+DLAA+R R    KAD  +Y 
Sbjct: 327 LLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLYATTDLAAVRYRSGVLKADRALYF 386

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            D  Q +HF+ + +       ++RL  ++ H  + + H+G +GT  G
Sbjct: 387 VDQRQALHFQQVFQ-------VARLAGFVTHP-MEMEHMG-FGTMNG 424



 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 182/345 (52%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+        S  ++DL+ FY
Sbjct: 188 STIIGDGVARVLEFLGDEVIRQNHVGDWGTQFGMLMAYLQEN----PITSDELSDLENFY 243

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA   VV LQ  DPD    W    D+S    QKIY+ LNV LT  
Sbjct: 244 RAAKQRFDESAEFADRARGLVVKLQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMA 303

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+  G L                                   
Sbjct: 304 DVMGESAYNDDLINVVNDLKAAGLLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLY 363

Query: 707 ------SLTKKLGI------VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                 ++  + G+      +Y  D  Q +HF+ + + A+ AG +  +   M+ +GFG +
Sbjct: 364 ATTDLAAVRYRSGVLKADRALYFVDQRQALHFQQVFQVARLAGFVT-HPMEMEHMGFGTM 422

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN   EL   EL    + V  G +K
Sbjct: 423 NGADGRPFKTRDGGTVKLIDLLTEAQERAYTLVKEKN--PELAEDELRNIAKVVGIGAVK 480

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 481 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 525



 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   EL    + V  G +KYADLS +R  DY F+FD ML+  GNTA YLLYAYT
Sbjct: 456  KEKNPELAEDELRNIAKVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYT 515

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G +  ++        + LE   E  LA  L +  ++L  V+     H LC 
Sbjct: 516  RVAGVFRKLGKDFSEVE-----GQIVLEAAHEHELAAKLAQFGEILNNVSDKGTPHILCT 570

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLYD++  FS FY+NC  +  D   ++++    RL LA  T + +K+
Sbjct: 571  YLYDVAGLFSSFYENCPILGADTPAQMQS----RLRLAALTGRTLKQ 613


>gi|420142261|ref|ZP_14649880.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa CIG1]
 gi|421163668|ref|ZP_15622364.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa ATCC 25324]
 gi|451985327|ref|ZP_21933550.1| Arginyl-tRNA synthetase [Pseudomonas aeruginosa 18A]
 gi|403244993|gb|EJY58830.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa CIG1]
 gi|404528076|gb|EKA38195.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa ATCC 25324]
 gi|451757018|emb|CCQ86073.1| Arginyl-tRNA synthetase [Pseudomonas aeruginosa 18A]
          Length = 587

 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 132/327 (40%), Positives = 186/327 (56%), Gaps = 29/327 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P D+A  +   + +         + + K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIPAH--------EQLAKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F   V+    +   + +   GV+        RV++D SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQDHVWLAASLDRALADERLGVRKA--GPAQRVVIDLSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY+ +KKR
Sbjct: 146 AVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AEAELHDLEVFYRAAKKR 202

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+     GES
Sbjct: 203 FDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMADVMGES 262

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + Q+V  L  KGLL  D+G   ++ E     +   +P+ + K+ GG+ Y T+DLA
Sbjct: 263 AYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFKNAEGNPLPVIVQKAGGGYLYATTDLA 322

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFR 560
           A+R R     AD ++Y  D  Q +HF+
Sbjct: 323 AMRYRHNVLHADRVLYFVDQRQALHFQ 349



 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 185/355 (52%), Gaps = 60/355 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AEAELHDLEVFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+  
Sbjct: 197 RAAKKRFDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
              GES Y   + Q+V  L  KG L+                       + +K G     
Sbjct: 257 DVMGESAYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+ + E A++AG + P    ++ +GFG +
Sbjct: 317 ATTDLAAMRYRHNVLHADRVLYFVDQRQALHFQQVFEVARRAGFV-PAGMELEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTE------LTPTELSEAQQAV 808
            G D + FKTR G TVKL +LL+E   R+   +K++N              +L E  + V
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLEEAESRAYALVKERNEQRAERGEEPFDEVQLREIGRVV 435

Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
               +KYADLS +R  DY F+F+ ML   GNTA YLLYA TR+AS+ R  G   E
Sbjct: 436 GIDSVKYADLSKHRTSDYSFNFELMLSFEGNTAPYLLYACTRVASVFRKLGQGRE 490



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 9/194 (4%)

Query: 926  RGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
            R Y L +  ++ + +         +L E  + V    +KYADLS +R  DY F+F+ ML 
Sbjct: 403  RAYALVKERNEQRAERGEEPFDEVQLREIGRVVGIDSVKYADLSKHRTSDYSFNFELMLS 462

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTA YLLYA TR+AS+ R  G   E L        + LE  +E ALA  L +  D++
Sbjct: 463  FEGNTAPYLLYACTRVASVFRKLGQGREQL-----GGKIVLEQPQELALAAQLAQFGDLI 517

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
              V      H LC YLY+++  FS FY++C  +  +   +  +    RL LA  T + ++
Sbjct: 518  NNVALKGVPHLLCAYLYELAGLFSSFYEHCPILTAEDPAQKDS----RLRLAALTGRTLE 573

Query: 1106 KCFDILNIRTVHKM 1119
            +  ++L ++T+ +M
Sbjct: 574  QGLELLGLKTLERM 587


>gi|392986728|ref|YP_006485315.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa DK2]
 gi|419751704|ref|ZP_14278114.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa PADK2_CF510]
 gi|384401780|gb|EIE48133.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa PADK2_CF510]
 gi|392322233|gb|AFM67613.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa DK2]
          Length = 587

 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 132/327 (40%), Positives = 186/327 (56%), Gaps = 29/327 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P D+A  +   + +         + + K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIPAH--------EQLAKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F   V+    +   + +   GV+        RV++D SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQDHVWLAASLDRALADKRLGVRKA--GPAQRVVIDLSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY+ +KKR
Sbjct: 146 AVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AEAELHDLEVFYRAAKKR 202

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+     GES
Sbjct: 203 FDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMADVMGES 262

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + Q+V  L  KGLL  D+G   ++ E     +   +P+ + K+ GG+ Y T+DLA
Sbjct: 263 AYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFKNAEGNPLPVIVQKAGGGYLYATTDLA 322

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFR 560
           A+R R     AD ++Y  D  Q +HF+
Sbjct: 323 AMRYRHNVLHADRVLYFVDQRQALHFQ 349



 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 185/355 (52%), Gaps = 60/355 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AEAELHDLEVFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+  
Sbjct: 197 RAAKKRFDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
              GES Y   + Q+V  L  KG L+                       + +K G     
Sbjct: 257 DVMGESAYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+ + E A++AG + P    ++ +GFG +
Sbjct: 317 ATTDLAAMRYRHNVLHADRVLYFVDQRQALHFQQVFEVARRAGFV-PAGMELEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTE------LTPTELSEAQQAV 808
            G D + FKTR G TVKL +LL+E   R+   +K++N              +L E  + V
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLEEAESRAYALVKERNEQRAERGEEPFDEVQLREIGRVV 435

Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
               +KYADLS +R  DY F+F+ ML   GNTA YLLYA TR+AS+ R  G   E
Sbjct: 436 GIDSVKYADLSKHRTSDYSFNFELMLSFEGNTAPYLLYACTRVASVFRKLGQGRE 490



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 9/194 (4%)

Query: 926  RGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
            R Y L +  ++ + +         +L E  + V    +KYADLS +R  DY F+F+ ML 
Sbjct: 403  RAYALVKERNEQRAERGEEPFDEVQLREIGRVVGIDSVKYADLSKHRTSDYSFNFELMLS 462

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTA YLLYA TR+AS+ R  G   E L        + LE  +E ALA  L +  D++
Sbjct: 463  FEGNTAPYLLYACTRVASVFRKLGQGREQL-----GGKIVLEQPQELALAAQLAQFGDLI 517

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
              V      H LC YLY+++  FS FY++C  +  +   +  +    RL LA  T + ++
Sbjct: 518  NNVALKGVPHLLCAYLYELAGLFSSFYEHCPILTAEDPAQKDS----RLRLAALTGRTLE 573

Query: 1106 KCFDILNIRTVHKM 1119
            +  ++L ++T+ +M
Sbjct: 574  QGLELLGLKTLERM 587



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K    K     P D+A  +   + +         + + K+E A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIPAH--------EQLAKVEIAGPGFL 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F   V+    +   + +   GV+        RV++D SSPN+A++
Sbjct: 88  NFFQDHVWLAASLDRALADKRLGVRKA--GPAQRVVIDLSSPNLAKE 132


>gi|304396251|ref|ZP_07378133.1| arginyl-tRNA synthetase [Pantoea sp. aB]
 gi|304356620|gb|EFM20985.1| arginyl-tRNA synthetase [Pantoea sp. aB]
          Length = 594

 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 145/399 (36%), Positives = 220/399 (55%), Gaps = 44/399 (11%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E+A PG
Sbjct: 53  QFGDYQANGIMAVAKKLG-----QAPRQLAEAVIQ--------HLDLTGIASKVEIAGPG 99

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +     +  +     GVQ   L +   ++VD+S+PN+AKEMHVGH+RSTII
Sbjct: 100 FINIFLDHNWLATHARQALSLPRLGVQ---LAEPQTIVVDYSAPNVAKEMHVGHVRSTII 156

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH+V+R NHVGDWGTQFGMLIA L +K  +       +ADL+ FY+E+K
Sbjct: 157 GDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAFL-EKQQNEDHAEMALADLEGFYREAK 215

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---G 476
           + +DED  F +RA   VV LQ  D   ++ W+ + D++    QKIYDR+NVTLT     G
Sbjct: 216 RTYDEDPEFAERARSYVVKLQGGDEYCRQMWKKLVDITMSQNQKIYDRMNVTLTRNDVMG 275

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L++KGL    +G  +++    +++   PM ++  K DGG+ Y T+D
Sbjct: 276 ESLYNDMLPGIVSDLKQKGLAVESEGATVVFLDEFQNKEGEPMGVIIQKKDGGYLYTTTD 335

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           +A  + R E  KA+ ++Y  D  Q  H  L++  TI+     R   Y+   V   +H   
Sbjct: 336 IACAKYRYETLKANRVLYYIDSRQ--HQHLVQAWTIV-----RKAGYVPESVPLEHHA-- 386

Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
               FGM++   +D  P + T+S     L     E+ +R
Sbjct: 387 ----FGMMLG--KDGRP-FKTRSGGTIKLSDLLDEAYQR 418



 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 190/349 (54%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH+V+R NHVGDWGTQFGMLIA L +K  +       +ADL+ FY
Sbjct: 153 STIIGDAAVRTLEFLGHNVIRANHVGDWGTQFGMLIAFL-EKQQNEDHAEMALADLEGFY 211

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           +E+K+ +DED  F +RA   VV LQ  D   ++ W+ + D++    QKIYDR+NVTLT  
Sbjct: 212 REAKRTYDEDPEFAERARSYVVKLQGGDEYCRQMWKKLVDITMSQNQKIYDRMNVTLTRN 271

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L++KG                         + + KK G    
Sbjct: 272 DVMGESLYNDMLPGIVSDLKQKGLAVESEGATVVFLDEFQNKEGEPMGVIIQKKDGGYLY 331

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 332 TTTDIACAKYRYETLKANRVLYYIDSRQHQHLVQAWTIVRKAGYV-PESVPLEHHAFGMM 390

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T+KLS+LLDE  +R+   +++KN   E++  E+    + V    +K
Sbjct: 391 LGKDGRPFKTRSGGTIKLSDLLDEAYQRAYSLVREKN--PEMSEAEVKTLAEVVGISAVK 448

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+ S+ R AGIN++
Sbjct: 449 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKAGINAD 497



 Score =  130 bits (327), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 107/189 (56%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   +++KN   E++  E+    + V    +KYADLS +R  DY+F +D ML   GNT
Sbjct: 417  QRAYSLVREKN--PEMSEAEVKTLAEVVGISAVKYADLSKSRTTDYIFDWDNMLAFEGNT 474

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A Y+ YAYTR+ S+ R AGIN++ L        + +  E+E  LA  LL+  +V+  V R
Sbjct: 475  APYMQYAYTRVLSVFRKAGINADSL-----DAEIVISEEREAQLATRLLQFEEVITQVAR 529

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
            D   H +C YLYD++  FS FY++C  +  +++         RL LA  TAK +K+  D 
Sbjct: 530  DGTPHVMCAYLYDLAGLFSGFYEHCPILSAESDA----TRLSRLQLAALTAKTLKQGLDT 585

Query: 1111 LNIRTVHKM 1119
            L I TV +M
Sbjct: 586  LGIDTVERM 594



 Score = 48.1 bits (113), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K        + P  +A+++          +  L  +  K+E A PG
Sbjct: 53  QFGDYQANGIMAVAKKLG-----QAPRQLAEAVIQ--------HLDLTGIASKVEIAGPG 99

Query: 107 FVNVFLSRVYAGEQMKDIIV---NGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +     +  +     GVQ   L +   ++VD+S+PN+A++
Sbjct: 100 FINIFLDHNWLATHARQALSLPRLGVQ---LAEPQTIVVDYSAPNVAKE 145


>gi|365971090|ref|YP_004952651.1| arginyl-tRNA synthetase [Enterobacter cloacae EcWSU1]
 gi|365750003|gb|AEW74230.1| Arginyl-tRNA synthetase [Enterobacter cloacae EcWSU1]
          Length = 577

 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 133/340 (39%), Positives = 189/340 (55%), Gaps = 36/340 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MPPRQLAEQVL--------THLDLTGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +    +   + +   GV  P       V++D+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLARHVDAALKSDRLGVSQPEAQT---VVIDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DED+ F +RA   VV LQ  DP + + W  + D++    Q  Y+RLNVTLT     G
Sbjct: 198 KHYDEDDAFAERARSYVVKLQGGDPYFLEMWRKLVDITMSQNQLTYNRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ K L    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKNLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTII 568
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV 352



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/348 (39%), Positives = 188/348 (54%), Gaps = 56/348 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DED+ F +RA   VV LQ  DP + + W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKHYDEDDAFAERARSYVVKLQGGDPYFLEMWRKLVDITMSQNQLTYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-------------------------LTKKLG--- 713
              GES Y   +  +V  L+ K NL+                         + KK G   
Sbjct: 254 DVMGESLYNPMLPGIVADLKAK-NLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYL 312

Query: 714 --------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                               ++Y  D  Q  H        +KAG + P+   ++   FG+
Sbjct: 313 YTTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGM 371

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           +LG+D K FKTR+G TVKLS+LLDE L R+   + +KN   ++   EL +   AV  G +
Sbjct: 372 MLGKDGKPFKTRAGGTVKLSDLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAV 429

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 430 KYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKASID 477



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 106/191 (55%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I+   L     +  V +  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKASIDESAL----ANAEVIISEDREAQLAARLLQFEETLAVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             RD   H +C YLYD++  FS FY++C  +  ++E     V   RL LA+ TAK +K   
Sbjct: 511  ARDGTPHVMCSYLYDLAGLFSGFYEHCPILSAESEA----VRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 47.8 bits (112), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L  +  K E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MPPRQLAEQVL--------THLDLTGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +    +   + +   GV  P       V++D+S+PN+A++
Sbjct: 82  FINIFLEPAFLARHVDAALKSDRLGVSQPEAQT---VVIDYSAPNVAKE 127


>gi|15600244|ref|NP_253738.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|107104151|ref|ZP_01368069.1| hypothetical protein PaerPA_01005224 [Pseudomonas aeruginosa PACS2]
 gi|254238242|ref|ZP_04931565.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa C3719]
 gi|296391898|ref|ZP_06881373.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
 gi|355643269|ref|ZP_09053179.1| arginyl-tRNA synthetase [Pseudomonas sp. 2_1_26]
 gi|386061224|ref|YP_005977746.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa M18]
 gi|416879158|ref|ZP_11920709.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa 152504]
 gi|418587727|ref|ZP_13151752.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa MPAO1/P1]
 gi|418593608|ref|ZP_13157447.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa MPAO1/P2]
 gi|421156576|ref|ZP_15616019.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa ATCC 14886]
 gi|421183134|ref|ZP_15640598.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa E2]
 gi|421519617|ref|ZP_15966288.1| arginyl-tRNA ligase [Pseudomonas aeruginosa PAO579]
 gi|23822207|sp|Q9HUC8.1|SYR_PSEAE RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|9951342|gb|AAG08436.1|AE004918_6 arginyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|126170173|gb|EAZ55684.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa C3719]
 gi|334837687|gb|EGM16439.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa 152504]
 gi|347307530|gb|AEO77644.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa M18]
 gi|354829774|gb|EHF13836.1| arginyl-tRNA synthetase [Pseudomonas sp. 2_1_26]
 gi|375041567|gb|EHS34258.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa MPAO1/P1]
 gi|375046855|gb|EHS39407.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa MPAO1/P2]
 gi|404345536|gb|EJZ71888.1| arginyl-tRNA ligase [Pseudomonas aeruginosa PAO579]
 gi|404518869|gb|EKA29672.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa ATCC 14886]
 gi|404540683|gb|EKA50076.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa E2]
          Length = 587

 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 132/327 (40%), Positives = 186/327 (56%), Gaps = 29/327 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P D+A  +   + +         + + K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIPAH--------EQLAKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F   V+    +   + +   GV+        RV++D SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQDHVWLAASLDRALADERLGVRKA--GPAQRVVIDLSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY+ +KKR
Sbjct: 146 AVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AEAELHDLEVFYRAAKKR 202

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+     GES
Sbjct: 203 FDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMADVMGES 262

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + Q+V  L  KGLL  D+G   ++ E     +   +P+ + K+ GG+ Y T+DLA
Sbjct: 263 AYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFKNAEGNPLPVIVQKAGGGYLYATTDLA 322

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFR 560
           A+R R     AD ++Y  D  Q +HF+
Sbjct: 323 AMRYRHNVLHADRVLYFVDQRQALHFQ 349



 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 185/355 (52%), Gaps = 60/355 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AEAELHDLEVFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+  
Sbjct: 197 RAAKKRFDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
              GES Y   + Q+V  L  KG L+                       + +K G     
Sbjct: 257 DVMGESAYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+ + E A++AG + P    ++ +GFG +
Sbjct: 317 ATTDLAAMRYRHNVLHADRVLYFVDQRQALHFQQVFEVARRAGFV-PAGMELEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTE------LTPTELSEAQQAV 808
            G D + FKTR G TVKL +LL+E   R+   +K++N              +L E  + V
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLEEAESRAYALVKERNEQRAERGEEPFDEVQLREIGRVV 435

Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
               +KYADLS +R  DY F+F+ ML   GNTA YLLYA TR+AS+ R  G   E
Sbjct: 436 GIDSVKYADLSKHRTSDYSFNFELMLSFEGNTAPYLLYACTRVASVFRKLGQGRE 490



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 9/194 (4%)

Query: 926  RGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
            R Y L +  ++ + +         +L E  + V    +KYADLS +R  DY F+F+ ML 
Sbjct: 403  RAYALVKERNEQRAERGEEPFDEVQLREIGRVVGIDSVKYADLSKHRTSDYSFNFELMLS 462

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTA YLLYA TR+AS+ R  G   E L        + LE  +E ALA  L +  D++
Sbjct: 463  FEGNTAPYLLYACTRVASVFRKLGQGREQL-----GGKIVLEQPQELALAAQLAQFGDLI 517

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
              V      H LC YLY+++  FS FY++C  +  +   +  +    RL LA  T + ++
Sbjct: 518  NNVALKGVPHLLCAYLYELAGLFSSFYEHCPILTAEDPAQKDS----RLRLAALTGRTLE 573

Query: 1106 KCFDILNIRTVHKM 1119
            +  ++L ++T+ +M
Sbjct: 574  QGLELLGLKTLERM 587



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K    K     P D+A  +   + +         + + K+E A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIPAH--------EQLAKVEIAGPGFL 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F   V+    +   + +   GV+        RV++D SSPN+A++
Sbjct: 88  NFFQDHVWLAASLDRALADERLGVRKA--GPAQRVVIDLSSPNLAKE 132


>gi|398865136|ref|ZP_10620659.1| arginyl-tRNA synthetase [Pseudomonas sp. GM78]
 gi|398243875|gb|EJN29452.1| arginyl-tRNA synthetase [Pseudomonas sp. GM78]
          Length = 578

 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 204/370 (55%), Gaps = 40/370 (10%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V ++ +K   K GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQAITQLVNEGVLPEGLSPAIQVENSRDK---KNGDFASNIAMMLAK---PAGM 57

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQIK 318
           K  P D+A+ I + + ++        + + K E+A PGF+N F       +R+ A    +
Sbjct: 58  K--PRDLAEKIIAALPAD--------ENVSKTEIAGPGFLNFFQNTQALATRLDAALADE 107

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            I V    P       R +VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG +V+R N
Sbjct: 108 HIGVRKAGPVQ-----RTVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDEVIRQN 162

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY+ +K RFDE E F  RA   VV 
Sbjct: 163 HVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFYRAAKGRFDESEEFADRARGLVVK 218

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  DPD    W    D+S    QKIY+ LNV LT     GES Y   +  +V  L+  G
Sbjct: 219 LQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMADVMGESAYNDDLINVVNDLKAAG 278

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           +L   +G + ++       D   +P+ IVK+DGG+ Y T+DLAA+R R  + KAD  +Y 
Sbjct: 279 MLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLYATTDLAAVRYRSGKLKADRALYF 338

Query: 551 TDLGQGVHFR 560
            D  Q +HF+
Sbjct: 339 VDQRQALHFQ 348



 Score =  219 bits (559), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/345 (40%), Positives = 182/345 (52%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDEVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K RFDE E F  RA   VV LQ  DPD    W    D+S    QKIY+ LNV LT  
Sbjct: 196 RAAKGRFDESEEFADRARGLVVKLQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
              GES Y   +  +V  L+  G L  +     V++                        
Sbjct: 256 DVMGESAYNDDLINVVNDLKAAGMLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLY 315

Query: 718 --TDLG---------------------QGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
             TDL                      Q +HF+ +   A+KAG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGKLKADRALYFVDQRQALHFQQVFAVARKAGFVT-HPMEMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +KDKN   EL   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAQERAYTLVKDKN--PELAEAELRNIAKVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 96/175 (54%), Gaps = 11/175 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   +KDKN   EL   EL    + V  G +KYADLS +R  DY F+FD ML+  GNTA
Sbjct: 402  RAYTLVKDKN--PELAEAELRNIAKVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTA 459

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A + R  G +  ++        + LE   E  LA  L +  +VL  V+  
Sbjct: 460  PYLLYAYTRVAGVFRKLGKDFSEVE-----GQIVLEAAHEHELAAKLAQFGEVLNNVSEK 514

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
               H LC YLYD++  FS FY+NC  +  D   ++++    RL LA  T + +K+
Sbjct: 515  GTPHILCTYLYDVAGLFSSFYENCPILAADTPEQMQS----RLRLAALTGRTLKQ 565


>gi|313110089|ref|ZP_07795991.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|386063432|ref|YP_005978736.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa NCGM2.S1]
 gi|310882493|gb|EFQ41087.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|348031991|dbj|BAK87351.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa NCGM2.S1]
          Length = 587

 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 132/327 (40%), Positives = 186/327 (56%), Gaps = 29/327 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P D+A  +   + +         + + K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIPAH--------EQLAKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F   V+    +   + +   GV+        RV++D SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQDHVWLAASLDRALADERLGVRKA--GPAQRVVIDLSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY+ +KKR
Sbjct: 146 AVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AEAELHDLEVFYRAAKKR 202

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+     GES
Sbjct: 203 FDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMADVMGES 262

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + Q+V  L  KGLL  D+G   ++ E     +   +P+ + K+ GG+ Y T+DLA
Sbjct: 263 AYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFRNAEGNPLPVIVQKAGGGYLYATTDLA 322

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFR 560
           A+R R     AD ++Y  D  Q +HF+
Sbjct: 323 AMRYRHNVLHADRVLYFVDQRQALHFQ 349



 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 185/355 (52%), Gaps = 60/355 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AEAELHDLEVFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+  
Sbjct: 197 RAAKKRFDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
              GES Y   + Q+V  L  KG L+                       + +K G     
Sbjct: 257 DVMGESAYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFRNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+ + E A++AG + P    ++ +GFG +
Sbjct: 317 ATTDLAAMRYRHNVLHADRVLYFVDQRQALHFQQVFEVARRAGFV-PAGMELEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTE------LTPTELSEAQQAV 808
            G D + FKTR G TVKL +LL+E   R+   +K++N              +L E  + V
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLEEAESRAYALVKERNEQRAERGEEPFDEVQLREIGRVV 435

Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
               +KYADLS +R  DY F+F+ ML   GNTA YLLYA TR+AS+ R  G   E
Sbjct: 436 GIDSVKYADLSKHRTSDYSFNFELMLSFEGNTAPYLLYACTRVASVFRKLGQGRE 490



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 100/194 (51%), Gaps = 9/194 (4%)

Query: 926  RGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
            R Y L +  ++ + +         +L E  + V    +KYADLS +R  DY F+F+ ML 
Sbjct: 403  RAYALVKERNEQRAERGEEPFDEVQLREIGRVVGIDSVKYADLSKHRTSDYSFNFELMLS 462

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTA YLLYA TR+AS+ R  G   E L        + LE  +E  LA  L +  D++
Sbjct: 463  FEGNTAPYLLYACTRVASVFRKLGQGREQL-----GGKIVLEQPQELTLAAQLAQFGDLI 517

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
              V      H LC YLY+++  FS FY++C  +  +   +  +    RL LA  T + ++
Sbjct: 518  NNVALKGVPHLLCAYLYELAGLFSSFYEHCPILTAEDPAQKDS----RLRLAALTGRTLE 573

Query: 1106 KCFDILNIRTVHKM 1119
            +  ++L ++T+ +M
Sbjct: 574  QGLELLGLKTLERM 587



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K    K     P D+A  +   + +         + + K+E A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIPAH--------EQLAKVEIAGPGFL 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F   V+    +   + +   GV+        RV++D SSPN+A++
Sbjct: 88  NFFQDHVWLAASLDRALADERLGVRKA--GPAQRVVIDLSSPNLAKE 132


>gi|407697807|ref|YP_006822595.1| arginyl-tRNA synthetase [Alcanivorax dieselolei B5]
 gi|407255145|gb|AFT72252.1| Arginyl-tRNA synthetase [Alcanivorax dieselolei B5]
          Length = 584

 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 205/364 (56%), Gaps = 33/364 (9%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N A+ L K    K     P D+AQ++       L  +P+LAK     E+A PGF+
Sbjct: 41  GDFATNIALMLAKPAGVK-----PRDLAQALVDA----LPEDPALAKT----EIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN-GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 363
           N F S  +   Q++  + +  +  P   +   V+VD+S PN+AKEMHVGHLRSTIIGD +
Sbjct: 88  NFFQSDNWLASQLEAALADEHLAVPRPQQPQTVVVDYSGPNLAKEMHVGHLRSTIIGDAV 147

Query: 364 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY--LTKSPPIADLQAFYKESKKR 421
            R LE+LGH V+R NHVGDWGTQFGML+A+L+++  +      S  +A+L+ FY+ +K R
Sbjct: 148 VRSLEFLGHKVIRQNHVGDWGTQFGMLLAYLEEQKAEEGDTELSRELANLETFYRAAKLR 207

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE   F  RA   VV LQ  D    K W     VS      +Y+RL V+LT    RGES
Sbjct: 208 FDESPEFADRARALVVKLQSGDEYCLKLWNEFNQVSLSHCYAVYERLGVSLTATDVRGES 267

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + ++V  L+  GLL  D G   ++      +D  ++P+ + K+DGG+ Y T+DLA
Sbjct: 268 TYNDDLPKVVADLDAAGLLTEDQGALCVFLDEFRNKDGDTLPVIVRKADGGYLYATTDLA 327

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
           A+R R  + +AD I+Y  D  Q +HF+ +         ++R   ++G   V L H+G +G
Sbjct: 328 ALRYRANQLQADRILYFVDQRQALHFQQMF-------AVAREAGFVGAG-VDLAHMG-FG 378

Query: 594 TQFG 597
           T  G
Sbjct: 379 TMNG 382



 Score =  212 bits (539), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/349 (39%), Positives = 181/349 (51%), Gaps = 55/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY--LTKSPPIADLQA 622
           STIIGD + R LE+LGH V+R NHVGDWGTQFGML+A+L+++  +      S  +A+L+ 
Sbjct: 140 STIIGDAVVRSLEFLGHKVIRQNHVGDWGTQFGMLLAYLEEQKAEEGDTELSRELANLET 199

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+ +K RFDE   F  RA   VV LQ  D    K W     VS      +Y+RL V+LT
Sbjct: 200 FYRAAKLRFDESPEFADRARALVVKLQSGDEYCLKLWNEFNQVSLSHCYAVYERLGVSLT 259

Query: 683 E---RGESFYQKHMEQLVPYLEKKGNLS-------------------------------- 707
               RGES Y   + ++V  L+  G L+                                
Sbjct: 260 ATDVRGESTYNDDLPKVVADLDAAGLLTEDQGALCVFLDEFRNKDGDTLPVIVRKADGGY 319

Query: 708 --LTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFG 752
              T  L              I+Y  D  Q +HF+ +   A++AG +      +  +GFG
Sbjct: 320 LYATTDLAALRYRANQLQADRILYFVDQRQALHFQQMFAVAREAGFVGAG-VDLAHMGFG 378

Query: 753 VVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGC 812
            + G D K FKTR G TVKL +LLDE  +R+   + +KN   EL   EL     AV  G 
Sbjct: 379 TMNGPDGKPFKTRDGGTVKLIDLLDEAEQRAYQLVSEKN--PELDQDELRAIAHAVGIGA 436

Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           +KY+DLS NR  DYVF+FD ML   GNTA YLLYAYTR+ S+ R AG++
Sbjct: 437 VKYSDLSKNRTSDYVFNFDLMLSFDGNTAPYLLYAYTRVVSVFRKAGLS 485



 Score =  116 bits (290), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 101/189 (53%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   + +KN   EL   EL     AV  G +KY+DLS NR  DYVF+FD ML   GNT
Sbjct: 407  QRAYQLVSEKN--PELDQDELRAIAHAVGIGAVKYSDLSKNRTSDYVFNFDLMLSFDGNT 464

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYAYTR+ S+ R AG++   +        + L  E E ALA  L++  + +  V  
Sbjct: 465  APYLLYAYTRVVSVFRKAGLSLNQV-----DGELLLREEAEQALAARLVQFGEAVQSVAD 519

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H LC YLYD++  FS FY++C  +  D +     +   RL LA  TA+ + +   +
Sbjct: 520  KGQPHLLCAYLYDVAGLFSSFYEHCPILSGDDD----ALRASRLKLAALTARTLSEGLRL 575

Query: 1111 LNIRTVHKM 1119
            L +  + +M
Sbjct: 576  LGLTPLERM 584



 Score = 47.8 bits (112), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 14/105 (13%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N A+ L K    K     P D+AQ++       L  +P+LAK     E A PGF+
Sbjct: 41  GDFATNIALMLAKPAGVK-----PRDLAQALVDA----LPEDPALAKT----EIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN-GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F S  +   Q++  + +  +  P   +   V+VD+S PN+A++
Sbjct: 88  NFFQSDNWLASQLEAALADEHLAVPRPQQPQTVVVDYSGPNLAKE 132


>gi|116053199|ref|YP_793520.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254244067|ref|ZP_04937389.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|421170893|ref|ZP_15628806.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa ATCC 700888]
 gi|421177305|ref|ZP_15634961.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa CI27]
 gi|424944151|ref|ZP_18359914.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa NCMG1179]
 gi|122256786|sp|Q02EW6.1|SYR_PSEAB RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|115588420|gb|ABJ14435.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126197445|gb|EAZ61508.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|346060597|dbj|GAA20480.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa NCMG1179]
 gi|404522059|gb|EKA32598.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa ATCC 700888]
 gi|404529949|gb|EKA39969.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa CI27]
          Length = 587

 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 132/327 (40%), Positives = 186/327 (56%), Gaps = 29/327 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P D+A  +   + +         + + K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIPAH--------EQLAKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F   V+    +   + +   GV+        RV++D SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQDHVWLAASLDRALADERLGVRKA--GPAQRVVIDLSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY+ +KKR
Sbjct: 146 AVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AEAELHDLEVFYRAAKKR 202

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+     GES
Sbjct: 203 FDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMADVMGES 262

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + Q+V  L  KGLL  D+G   ++ E     +   +P+ + K+ GG+ Y T+DLA
Sbjct: 263 AYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFRNAEGNPLPVIVQKAGGGYLYATTDLA 322

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFR 560
           A+R R     AD ++Y  D  Q +HF+
Sbjct: 323 AMRYRHNVLHADRVLYFVDQRQALHFQ 349



 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 185/355 (52%), Gaps = 60/355 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AEAELHDLEVFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+  
Sbjct: 197 RAAKKRFDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
              GES Y   + Q+V  L  KG L+                       + +K G     
Sbjct: 257 DVMGESAYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFRNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+ + E A++AG + P    ++ +GFG +
Sbjct: 317 ATTDLAAMRYRHNVLHADRVLYFVDQRQALHFQQVFEVARRAGFV-PAGMELEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTE------LTPTELSEAQQAV 808
            G D + FKTR G TVKL +LL+E   R+   +K++N              +L E  + V
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLEEAESRAYALVKERNEQRAERGEEPFDEVQLREIGRVV 435

Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
               +KYADLS +R  DY F+F+ ML   GNTA YLLYA TR+AS+ R  G   E
Sbjct: 436 GIDSVKYADLSKHRTSDYSFNFELMLSFEGNTAPYLLYACTRVASVFRKLGQGRE 490



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 9/194 (4%)

Query: 926  RGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
            R Y L +  ++ + +         +L E  + V    +KYADLS +R  DY F+F+ ML 
Sbjct: 403  RAYALVKERNEQRAERGEEPFDEVQLREIGRVVGIDSVKYADLSKHRTSDYSFNFELMLS 462

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTA YLLYA TR+AS+ R  G   E L        + LE  +E ALA  L +  D++
Sbjct: 463  FEGNTAPYLLYACTRVASVFRKLGQGREQL-----GGKIVLEQPQELALAAQLAQFGDLI 517

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
              V      H LC YLY+++  FS FY++C  +  +   +  +    RL LA  T + ++
Sbjct: 518  NNVALKGVPHLLCAYLYELAGLFSSFYEHCPILTAEDPAQKDS----RLRLAALTGRTLE 573

Query: 1106 KCFDILNIRTVHKM 1119
            +  ++L ++T+ +M
Sbjct: 574  QGLELLGLKTLERM 587



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K    K     P D+A  +   + +         + + K+E A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIPAH--------EQLAKVEIAGPGFL 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F   V+    +   + +   GV+        RV++D SSPN+A++
Sbjct: 88  NFFQDHVWLAASLDRALADERLGVRKA--GPAQRVVIDLSSPNLAKE 132


>gi|255066448|ref|ZP_05318303.1| arginine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255049328|gb|EET44792.1| arginine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 572

 Score =  226 bits (575), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 190/345 (55%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L   
Sbjct: 193 RAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDSLGLKLRPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   ++ +V  L +KG                                     
Sbjct: 253 DVAGESKYNDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLY 312

Query: 705 ---NLS-LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +L+ L  ++G      ++YV D  Q +HF  L   ++KAG L P   + +F+GFG +
Sbjct: 313 ASTDLACLRYRIGRLKADRLLYVVDHRQALHFEQLFTTSRKAGYL-PENAKAEFIGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL E + R+   +K+KN   EL   E ++  + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKN--PELGAGEAAKIGKTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 430 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAG 474



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/329 (41%), Positives = 190/329 (57%), Gaps = 28/329 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  EVA PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LAGNA----VIESAEVAGPGFI 82

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N+ L   +  + I   + +   GV     +K   V++D+SSPN+AKEMHVGHLRS+IIGD
Sbjct: 83  NLRLRPEFLAQNIHAALNDARFGV--AKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGD 140

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
           +ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K R
Sbjct: 141 SISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRAAKVR 198

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GES 478
           FDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L      GES
Sbjct: 199 FDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDSLGLKLRPEDVAGES 258

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDLA 533
            Y   ++ +V  L +KGL   DDG K+++ ++     G     IV K  GGF Y ++DLA
Sbjct: 259 KYNDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLA 318

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
            +R RI   KAD ++YV D  Q +HF  L
Sbjct: 319 CLRYRIGRLKADRLLYVVDHRQALHFEQL 347



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   E ++  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KEKNPELGAGEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG    +  +AA   P  L    E  LA  LL+  DVL  V      H+L  
Sbjct: 465  RVQSVFRKAG----EWDMAA---PTVLTEPLEKQLAAELLKFEDVLQSVADTAYPHYLAA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY  +T FS FY+ C  ++  AEG  +     RL LA+ T   +K+  D+L I  +  M
Sbjct: 518  YLYQTATLFSRFYEACPILK--AEGATR---NSRLQLAKLTGDTLKQGLDLLGIDVLDVM 572



 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 20/128 (15%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  E A PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LAGNA----VIESAEVAGPGFI 82

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIH 165
           N+ L   +  + +   + +   GV     +K   V++D+SSPN+A++      HL S I 
Sbjct: 83  NLRLRPEFLAQNIHAALNDARFGV--AKTDKPQTVVIDYSSPNLAKE--MHVGHLRSSII 138

Query: 166 DILISKAI 173
              IS+ +
Sbjct: 139 GDSISRVL 146


>gi|398879215|ref|ZP_10634315.1| arginyl-tRNA synthetase [Pseudomonas sp. GM67]
 gi|398197172|gb|EJM84157.1| arginyl-tRNA synthetase [Pseudomonas sp. GM67]
          Length = 626

 Score =  226 bits (575), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 203/370 (54%), Gaps = 40/370 (10%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V ++ +K   K GDF  N AM L K     G 
Sbjct: 52  TIRQLIQQAITQLVNEGVLPEGLTPAIQVENSRDK---KNGDFASNIAMMLAK---PAGM 105

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQIK 318
           K  P D+A+ I + + ++        + + K E+A PGF+N F       +R+ A    +
Sbjct: 106 K--PRDLAEKIIAALPAD--------ENVTKTEIAGPGFLNFFQNTDALATRLDAALADE 155

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            I V    P       R +VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG +V+R N
Sbjct: 156 HIGVRKAGPAQ-----RTVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDEVIRQN 210

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+LQ+        S  ++DL+ FY+ +K RFDE E F  RA   VV 
Sbjct: 211 HVGDWGTQFGMLMAYLQEN----PITSDELSDLENFYRAAKGRFDESEEFADRARGLVVK 266

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  DPD    W    D+S    QKIY+ LNV LT     GES Y   +  +V  L+  G
Sbjct: 267 LQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMADVMGESAYNDDLINVVNDLKAAG 326

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           +L   +G + ++       D   +P+ IVK+DGG+ Y T+DLAA+R R  + KAD  +Y 
Sbjct: 327 MLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLYATTDLAAVRYRSGKLKADRALYF 386

Query: 551 TDLGQGVHFR 560
            D  Q +HF+
Sbjct: 387 VDQRQALHFQ 396



 Score =  218 bits (556), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 182/345 (52%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+        S  ++DL+ FY
Sbjct: 188 STIIGDGVARVLEFLGDEVIRQNHVGDWGTQFGMLMAYLQEN----PITSDELSDLENFY 243

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K RFDE E F  RA   VV LQ  DPD    W    D+S    QKIY+ LNV LT  
Sbjct: 244 RAAKGRFDESEEFADRARGLVVKLQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMA 303

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
              GES Y   +  +V  L+  G L  +     V++                        
Sbjct: 304 DVMGESAYNDDLINVVNDLKAAGMLVESNGAQCVFLDEFKNADGDPLPVIIVKADGGYLY 363

Query: 718 --TDLG---------------------QGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
             TDL                      Q +HF+ +   A+KAG +  +   M+ +GFG +
Sbjct: 364 ATTDLAAVRYRSGKLKADRALYFVDQRQALHFQQVFAVARKAGFVT-HPMEMEHMGFGTM 422

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+ + +K+KN   EL   EL    + V  G +K
Sbjct: 423 NGADGRPFKTRDGGTVKLIDLLTEAQERAYNLVKEKN--PELAEDELRNIAKVVGIGAVK 480

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 481 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 525



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 11/175 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+ + +K+KN   EL   EL    + V  G +KYADLS +R  DY F+FD ML+  GNTA
Sbjct: 450  RAYNLVKEKN--PELAEDELRNIAKVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTA 507

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A + R  G +  ++        + LE   E  LA  L +  ++L  V+  
Sbjct: 508  PYLLYAYTRVAGVFRKLGKDFSEVE-----GQIVLEAAHEHELAAKLAQFGEILNNVSEK 562

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
               H LC YLYD++  FS FY+NC  +  +   ++++    RL LA  T + +K+
Sbjct: 563  GTPHILCTYLYDVAGLFSSFYENCPILSAETPAQMQS----RLRLAALTGRTLKQ 613


>gi|398882020|ref|ZP_10636992.1| arginyl-tRNA synthetase [Pseudomonas sp. GM60]
 gi|398199739|gb|EJM86674.1| arginyl-tRNA synthetase [Pseudomonas sp. GM60]
          Length = 578

 Score =  226 bits (575), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 204/370 (55%), Gaps = 40/370 (10%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V ++ +K   K GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQAITQLVNEGVLPEGLTPAIQVENSRDK---KNGDFASNIAMMLAK---PAGM 57

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQIK 318
           K  P D+A+ I + + ++        + + K E+A PGF+N F       +R+ A    +
Sbjct: 58  K--PRDLAEKIIAALPAD--------ENVTKTEIAGPGFLNFFQNTDALATRLDAALADE 107

Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
            I V    P       R +VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG +V+R N
Sbjct: 108 HIGVRKAGPAQ-----RTVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDEVIRQN 162

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY+ +K RFDE E F  RA   VV 
Sbjct: 163 HVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFYRAAKGRFDESEEFADRARGLVVK 218

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  DPD    W    D+S    QKIY+ LNV LT     GES Y   +  +V  L+  G
Sbjct: 219 LQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMADVMGESAYNDDLINVVNDLKAAG 278

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           +L   +G + ++       D   +P+ IVK+DGG+ Y T+DLAA+R R  + KAD  +Y 
Sbjct: 279 MLVESNGAQCVFLDDFKNADGDPLPVIIVKADGGYLYATTDLAAVRYRSGKLKADRALYF 338

Query: 551 TDLGQGVHFR 560
            D  Q +HF+
Sbjct: 339 VDQRQALHFQ 348



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/345 (40%), Positives = 183/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG +V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDEVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K RFDE E F  RA   VV LQ  DPD    W    D+S    QKIY+ LNV LT  
Sbjct: 196 RAAKGRFDESEEFADRARGLVVKLQAGDPDCLALWTKFKDISLSHCQKIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
              GES Y   +  +V  L+  G L  +     V++                        
Sbjct: 256 DVMGESAYNDDLINVVNDLKAAGMLVESNGAQCVFLDDFKNADGDPLPVIIVKADGGYLY 315

Query: 718 --TDLG---------------------QGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
             TDL                      Q +HF+ +   A+KAG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGKLKADRALYFVDQRQALHFQQVFAVARKAGFVT-HPMEMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+ + +K+KN   EL   EL    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAQERAYNLVKEKN--PELAEDELRNIAKVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 11/175 (6%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+ + +K+KN   EL   EL    + V  G +KYADLS +R  DY F+FD ML+  GNTA
Sbjct: 402  RAYNLVKEKN--PELAEDELRNIAKVVGIGAVKYADLSKHRTSDYSFNFDLMLNFEGNTA 459

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YLLYAYTR+A + R  G +  ++        + LE   E  LA  L +  ++L  V+  
Sbjct: 460  PYLLYAYTRVAGVFRKLGKDFSEVE-----GQIVLEAAHEHELAAKLAQFGEILNNVSEK 514

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
               H LC YLYD++  FS FY+NC  +  +   ++++    RL LA  T + +K+
Sbjct: 515  GTPHILCTYLYDVAGLFSSFYENCPILSAETPAQMQS----RLRLAALTGRTLKQ 565


>gi|397671336|ref|YP_006512871.1| arginine--tRNA ligase [Propionibacterium propionicum F0230a]
 gi|395143453|gb|AFN47560.1| arginine--tRNA ligase [Propionibacterium propionicum F0230a]
          Length = 547

 Score =  226 bits (575), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 207/366 (56%), Gaps = 39/366 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FG FQ N A+ L K      E+K P    + +A+ + ++L     ++ + + +E+A PG
Sbjct: 32  QFGHFQSNVALRLAK------EQKRP---PREVAADIVAQL----DVSDLCEPLEIAGPG 78

Query: 303 FVNVFLSRVYAGEQIKDIIV----NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
           F+N F  R     Q    ++    +G+     +   RV++D+S+PN+AK+MHVGHLR+TI
Sbjct: 79  FIN-FRIRADVLAQAATAVLEDPHHGLS--RTSHPQRVVIDYSAPNVAKQMHVGHLRTTI 135

Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 418
           IGD  +R+L  LGH+V+  NH+GDWGTQFGML+ H+ +   D    +  +A  +  YK+S
Sbjct: 136 IGDCFNRVLTALGHEVIPQNHIGDWGTQFGMLVEHIIETGTD--VTALDLAGAEQLYKDS 193

Query: 419 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---R 475
           KK FD+D  F  RA   VV LQ  D +    W  +  VS   F   Y RL V LT+    
Sbjct: 194 KKHFDDDPGFATRARARVVKLQGGDQETLAIWRQLIAVSLAGFNAAYQRLGVLLTDADLA 253

Query: 476 GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAI 535
           GES Y   + ++   L ++G+  +DDG  ++W E   + P+ I KS GG+ YDT+D+AAI
Sbjct: 254 GESTYNDALPEVAADLAERGIAVVDDGALVLWVEGFDA-PLIIRKSGGGYGYDTTDMAAI 312

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 595
           R R+ E KAD I+YVTD+ Q  HF+ L E+       +R   YL  D V   HVG     
Sbjct: 313 RHRVRELKADRIIYVTDVRQSQHFQELFEA-------ARKAGYLPED-VEAQHVG----- 359

Query: 596 FGMLIA 601
           +GM++ 
Sbjct: 360 YGMVLG 365



 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 162/338 (47%), Gaps = 68/338 (20%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +TIIGD  +R+L  LGH+V+  NH+GDWGTQFGML+ H+ +   D    +  +A  +  Y
Sbjct: 133 TTIIGDCFNRVLTALGHEVIPQNHIGDWGTQFGMLVEHIIETGTD--VTALDLAGAEQLY 190

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           K+SKK FD+D  F  RA   VV LQ  D +    W  +  VS   F   Y RL V LT+ 
Sbjct: 191 KDSKKHFDDDPGFATRARARVVKLQGGDQETLAIWRQLIAVSLAGFNAAYQRLGVLLTDA 250

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG---------- 713
              GES Y   + ++   L ++G                   L + K  G          
Sbjct: 251 DLAGESTYNDALPEVAADLAERGIAVVDDGALVLWVEGFDAPLIIRKSGGGYGYDTTDMA 310

Query: 714 -------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 760
                        I+YVTD+ Q  HF+ L E A+KAG L P       VG+G+VLG D +
Sbjct: 311 AIRHRVRELKADRIIYVTDVRQSQHFQELFEAARKAGYL-PEDVEAQHVGYGMVLGPDSR 369

Query: 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH 820
            FKTR G TV L+ LLD         L ++            EA   +A   IKYADLS 
Sbjct: 370 PFKTRDGGTVSLTSLLD---------LAEQ------------EASPEIALAAIKYADLSG 408

Query: 821 NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
             + DYVF  ++M+   G+T  YL YA+ RI  I R A
Sbjct: 409 AIHKDYVFDAERMVQTTGDTGPYLQYAHARICQILRRA 446



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/214 (35%), Positives = 103/214 (48%), Gaps = 16/214 (7%)

Query: 912  RGVGRGQEEVQDSLRGYGLRRSLDKLKDKNRH------TELTPTELSEAQQAVAYGCIKY 965
            R  G   E+V+    GYG+    D    K R       T L      EA   +A   IKY
Sbjct: 344  RKAGYLPEDVEAQHVGYGMVLGPDSRPFKTRDGGTVSLTSLLDLAEQEASPEIALAAIKY 403

Query: 966  ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVS 1025
            ADLS   + DYVF  ++M+   G+T  YL YA+ RI  I R A   +E++   A +    
Sbjct: 404  ADLSGAIHKDYVFDAERMVQTTGDTGPYLQYAHARICQILRRA--EAENIGWGAVAV--- 458

Query: 1026 LEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGK 1085
            LE   E  LA  L R  +V+  V R L  H LC YLY+++ AFS FY+ C  +  + E  
Sbjct: 459  LEDPAEQTLALVLSRFGEVVDEVARALTPHKLCGYLYELAGAFSAFYEACPVLRSEGE-- 516

Query: 1086 IKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
               V + RL LA AT +V+ +   +L I    +M
Sbjct: 517  ---VRSSRLALAAATREVLAQGLHLLGIEAPDRM 547


>gi|401675886|ref|ZP_10807873.1| arginyl-tRNA ligase [Enterobacter sp. SST3]
 gi|400216930|gb|EJO47829.1| arginyl-tRNA ligase [Enterobacter sp. SST3]
          Length = 577

 Score =  225 bits (574), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 134/340 (39%), Positives = 189/340 (55%), Gaps = 36/340 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  LA +  K E+A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MPPRQLAEQVL--------THLDLAGIASKTEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +    +   + +   GV  P       V++D+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLASHVDAALKSDRLGVSQPEAQT---VVIDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY+E+K
Sbjct: 139 GDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFYREAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  + + W  + D++    Q  Y+RLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARSYVVKLQGGDQYFLEMWRKLVDITMSQNQLTYNRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYD 528
           ES Y   +  +V  L+ K L    +G  +++        GE  G I   I K DGG+ Y 
Sbjct: 258 ESLYNPMLPGIVADLKAKNLAVESEGATVVFLDEYKNKEGEPMGVI---IQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTII 568
           T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+
Sbjct: 315 TTDIACAKYRYETLHADRVLYYIDSRQ--HQHLMQAWTIV 352



 Score =  221 bits (562), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/348 (39%), Positives = 187/348 (53%), Gaps = 56/348 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA+L+ +  +   +   +ADL+ FY
Sbjct: 135 STIIGDAAVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQENAGEM-ALADLEGFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE F +RA   VV LQ  D  + + W  + D++    Q  Y+RLNVTLT  
Sbjct: 194 REAKKHYDEDEAFAERARSYVVKLQGGDQYFLEMWRKLVDITMSQNQLTYNRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-------------------------LTKKLG--- 713
              GES Y   +  +V  L+ K NL+                         + KK G   
Sbjct: 254 DVMGESLYNPMLPGIVADLKAK-NLAVESEGATVVFLDEYKNKEGEPMGVIIQKKDGGYL 312

Query: 714 --------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
                               ++Y  D  Q  H        +KAG + P+   ++   FG+
Sbjct: 313 YTTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PDSVPLEHHMFGM 371

Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
           +LG+D K FKTR+G TVKLS+LLDE L R+   + +KN   ++   EL +   AV  G +
Sbjct: 372 MLGKDGKPFKTRAGGTVKLSDLLDEALERARRLVAEKN--PDMPADELEKLANAVGIGAV 429

Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           KYADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ S+ R A I+
Sbjct: 430 KYADLSKNRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVLSVFRKANID 477



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 109/191 (57%), Gaps = 10/191 (5%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
             L R+   + +KN   ++   EL +   AV  G +KYADLS NR  DY+F +D ML   G
Sbjct: 397  ALERARRLVAEKN--PDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNMLAFEG 454

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTA Y+ YAYTR+ S+ R A I   D  V A +T V++  ++E  LA  LL+  + L +V
Sbjct: 455  NTAPYMQYAYTRVLSVFRKANI---DESVLANAT-VTITEDREAQLAARLLQFEETLTVV 510

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
             RD   H +C YLYD++  FS FY++C  +  + E    +V   RL LA+ TAK +K   
Sbjct: 511  ARDGTPHVMCAYLYDLAGLFSGFYEHCPILSAENE----SVRNSRLKLAQLTAKTLKLGL 566

Query: 1109 DILNIRTVHKM 1119
            D L I TV +M
Sbjct: 567  DTLGIETVERM 577



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  LA +  K E A PG
Sbjct: 35  QFGDYQANGVMAVAKKLG-----MPPRQLAEQVL--------THLDLAGIASKTEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +    +   + +   GV  P       V++D+S+PN+A++
Sbjct: 82  FINIFLEPAFLASHVDAALKSDRLGVSQPEAQT---VVIDYSAPNVAKE 127


>gi|218894150|ref|YP_002443019.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|226701383|sp|B7V3E4.1|SYR_PSEA8 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|218774378|emb|CAW30195.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
          Length = 587

 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 132/327 (40%), Positives = 186/327 (56%), Gaps = 29/327 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P D+A  +   + +         + + K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIPAH--------EQLAKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F   V+    +   + +   GV+        RV++D SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQDHVWLAASLDRALADERLGVRKA--GPAQRVVIDLSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY+ +KKR
Sbjct: 146 AVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPID---AEAELHDLEVFYRAAKKR 202

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+     GES
Sbjct: 203 FDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMADVMGES 262

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + Q+V  L  KGLL  D+G   ++ E     +   +P+ + K+ GG+ Y T+DLA
Sbjct: 263 AYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFKNAEGNPLPVIVQKAGGGYLYATTDLA 322

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFR 560
           A+R R     AD ++Y  D  Q +HF+
Sbjct: 323 AMRYRHNVLHADRVLYFVDQRQALHFQ 349



 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 185/355 (52%), Gaps = 60/355 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPID---AEAELHDLEVFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+  
Sbjct: 197 RAAKKRFDESPEFADRARELVVKLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
              GES Y   + Q+V  L  KG L+                       + +K G     
Sbjct: 257 DVMGESAYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+ + E A++AG + P    ++ +GFG +
Sbjct: 317 ATTDLAAMRYRHNVLHADRVLYFVDQRQALHFQQVFEVARRAGFV-PAGMELEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTE------LTPTELSEAQQAV 808
            G D + FKTR G TVKL +LL+E   R+   +K++N              +L E  + V
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLEEAESRAYALVKERNEQRAERGEEPFDEVQLREIGRVV 435

Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
               +KYADLS +R  DY F+F+ ML   GNTA YLLYA TR+AS+ R  G   E
Sbjct: 436 GIDSVKYADLSKHRTSDYSFNFELMLSFEGNTAPYLLYACTRVASVFRKLGQGRE 490



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 9/194 (4%)

Query: 926  RGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
            R Y L +  ++ + +         +L E  + V    +KYADLS +R  DY F+F+ ML 
Sbjct: 403  RAYALVKERNEQRAERGEEPFDEVQLREIGRVVGIDSVKYADLSKHRTSDYSFNFELMLS 462

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTA YLLYA TR+AS+ R  G   E L        + LE  +E ALA  L +  D++
Sbjct: 463  FEGNTAPYLLYACTRVASVFRKLGQGREQL-----GGKIVLEQPQELALAAQLAQFGDLI 517

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
              V      H LC YLY+++  FS FY++C  +  +   +  +    RL LA  T + ++
Sbjct: 518  NNVALKGVPHLLCAYLYELAGLFSSFYEHCPILTAEDPAQKDS----RLRLAALTGRTLE 573

Query: 1106 KCFDILNIRTVHKM 1119
            +  ++L ++T+ +M
Sbjct: 574  QGLELLGLKTLERM 587



 Score = 42.0 bits (97), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N AM L K    K     P D+A  +   + +         + + K+E A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAARLVEAIPAH--------EQLAKVEIAGPGFL 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F   V+    +   + +   GV+        RV++D SSPN+A++
Sbjct: 88  NFFQDHVWLAASLDRALADERLGVRKA--GPAQRVVIDLSSPNLAKE 132


>gi|296314056|ref|ZP_06863997.1| arginine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296839307|gb|EFH23245.1| arginine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 572

 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 147/362 (40%), Positives = 203/362 (56%), Gaps = 33/362 (9%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDFQ N  M   K       K+NP ++AQ +A V    LA N     VI+  EVA PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEV----LAGNA----VIESAEVAGPGFI 82

Query: 305 NVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 363
           N+ L   +    I+  + +        +K   V++D+SSPN+AKEMHVGHLRS+IIGD+I
Sbjct: 83  NLRLRPEFLARNIQTALNDARFGIAKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGDSI 142

Query: 364 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 423
           SR+L ++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K RFD
Sbjct: 143 SRVLAFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRAAKVRFD 200

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFY 480
           ED  F   A + VV LQ  D      W+   D+S    Q +YD L++ L      GES Y
Sbjct: 201 EDPTFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLSLKLRPEDVAGESKY 260

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDLAAI 535
              ++ +V  L +KGL   DDG K+++ ++     G     IV K  GGF Y ++DLA +
Sbjct: 261 NDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLACL 320

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 595
           R RI   KAD ++YV D  Q +HF  L        T SR   YL  D V+   +G +GT 
Sbjct: 321 RYRIGRLKADRLLYVVDHRQALHFEQLF-------TTSRKAGYLPED-VKAEFIG-FGTM 371

Query: 596 FG 597
            G
Sbjct: 372 MG 373



 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 137/345 (39%), Positives = 189/345 (54%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+L ++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSISRVLAFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L++ L   
Sbjct: 193 RAAKVRFDEDPTFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLSLKLRPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   ++ +V  L +KG                                     
Sbjct: 253 DVAGESKYNDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLY 312

Query: 705 ---NLS-LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +L+ L  ++G      ++YV D  Q +HF  L   ++KAG L P   + +F+GFG +
Sbjct: 313 ASTDLACLRYRIGRLKADRLLYVVDHRQALHFEQLFTTSRKAGYL-PEDVKAEFIGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL E + R+   +K+KN   EL   E  +  + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKN--PELGTDEAGKIGKTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 430 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAG 474



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   E  +  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KEKNPELGTDEAGKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG           + P  L    E  LA  LL+  DVL  V      H+L  
Sbjct: 465  RVQSVFRKAGEWD-------ATAPTVLTEPLEKQLAAELLKFEDVLQSVADTAYPHYLAA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY I+T FS FY+ C  ++  AEG  +     RL LA+ T   +K+  D+L I  +  M
Sbjct: 518  YLYQIATLFSRFYEACPILK--AEGASR---NSRLQLAKLTGDTLKQGLDLLGIDVLDVM 572



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 16/127 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDFQ N  M   K       K+NP ++AQ +A V    LA N     VI+  E A PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEV----LAGNA----VIESAEVAGPGFI 82

Query: 109 NVFLSRVYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDI 167
           N+ L   +    ++  + +        +K   V++D+SSPN+A++      HL S I   
Sbjct: 83  NLRLRPEFLARNIQTALNDARFGIAKTDKPQTVVIDYSSPNLAKE--MHVGHLRSSIIGD 140

Query: 168 LISKAIA 174
            IS+ +A
Sbjct: 141 SISRVLA 147


>gi|309813013|ref|ZP_07706741.1| arginine--tRNA ligase [Dermacoccus sp. Ellin185]
 gi|308433085|gb|EFP56989.1| arginine--tRNA ligase [Dermacoccus sp. Ellin185]
          Length = 594

 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 127/334 (38%), Positives = 185/334 (55%), Gaps = 27/334 (8%)

Query: 246 DFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVN 305
           D Q N AMAL K        KNP    + +AS +   L  +  +  ++D +E+A PGF+N
Sbjct: 41  DVQVNAAMALAKKVG-----KNP----REVASAIVEALRADDEVMALVDDVEIAGPGFLN 91

Query: 306 VFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVL-VDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           + LS  +   Q   I+ +G        K  ++ +D+SSPN+AKEMHVGHLR+T++GD+++
Sbjct: 92  ITLSTDWVAAQASTILADGSLGVAPAAKTEIIPIDYSSPNVAKEMHVGHLRTTVVGDSLA 151

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 424
           R+LE LGH V+R NHVGDWGT FGMLI HL +   D    +   +D  AFY+ ++ +FD 
Sbjct: 152 RVLERLGHTVIRQNHVGDWGTPFGMLIEHLLEVGEDSPEAALLESDPNAFYQAARTKFDT 211

Query: 425 DEI---------FKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 474
            E          F  RA + V  LQ  DP+    W  + + S+  F K+Y  L VTLT+ 
Sbjct: 212 AEKAEPAGSKGDFNTRARKRVTLLQGGDPETLAHWNKLMERSKAYFNKVYGLLGVTLTDA 271

Query: 475 --RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTY 527
              GES Y   +  +   LE +G+  + DG   ++     G D   +P+ I KSDGG+ Y
Sbjct: 272 DLAGESTYNDELAGICDDLESRGIAVVSDGALCIFQDEFTGRDDAPVPLIIRKSDGGYGY 331

Query: 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561
            T+DLA +R R  + + D +VYV    Q +HFR+
Sbjct: 332 ATTDLATVRHRSFDLQGDRMVYVVGAPQNLHFRM 365



 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 176/361 (48%), Gaps = 67/361 (18%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    +T++GD+++R+LE LGH V+R NHVGDWGT FGMLI HL +   D    +   
Sbjct: 140 HLR----TTVVGDSLARVLERLGHTVIRQNHVGDWGTPFGMLIEHLLEVGEDSPEAALLE 195

Query: 618 ADLQAFYKESKKRFDEDEI---------FKKRAYQCVVALQRFDPDYKKAWEMICDVSRR 668
           +D  AFY+ ++ +FD  E          F  RA + V  LQ  DP+    W  + + S+ 
Sbjct: 196 SDPNAFYQAARTKFDTAEKAEPAGSKGDFNTRARKRVTLLQGGDPETLAHWNKLMERSKA 255

Query: 669 DFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKG--------------------- 704
            F K+Y  L VTLT+    GES Y   +  +   LE +G                     
Sbjct: 256 YFNKVYGLLGVTLTDADLAGESTYNDELAGICDDLESRGIAVVSDGALCIFQDEFTGRDD 315

Query: 705 ---NLSLTKKLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGI 738
               L + K  G                       +VYV    Q +HFR+    A KAG 
Sbjct: 316 APVPLIIRKSDGGYGYATTDLATVRHRSFDLQGDRMVYVVGAPQNLHFRMTWAAADKAGY 375

Query: 739 LNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTP 798
           + P  T +  V  G VLG+D K FKTRSGD+V L +LL E + R+   + +     E++ 
Sbjct: 376 IRPESTPI-HVQIGSVLGKDGKMFKTRSGDSVLLMDLLGEAVDRAAGVVSESK--AEMSD 432

Query: 799 TELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI-ART 857
            E +   + V  G +KYADLS + + +Y+F FD+ML   GNT  YL YA TRI SI AR 
Sbjct: 433 EERAVVARQVGIGAVKYADLSVSHDSEYIFDFDRMLALTGNTGPYLQYAATRIRSILARA 492

Query: 858 A 858
           A
Sbjct: 493 A 493



 Score = 96.7 bits (239), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 11/177 (6%)

Query: 944  TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIAS 1003
             E++  E +   + V  G +KYADLS + + +Y+F FD+ML   GNT  YL YA TRI S
Sbjct: 428  AEMSDEERAVVARQVGIGAVKYADLSVSHDSEYIFDFDRMLALTGNTGPYLQYAATRIRS 487

Query: 1004 I-ARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLY 1062
            I AR A          + +  ++L  + E ALA  LL    V+  V   L  H L  YL+
Sbjct: 488  ILARAAEAGY------SPAAEITLGEDAERALALKLLDYGAVVAAVGESLEPHRLAGYLF 541

Query: 1063 DISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            +++T F+ FY+ C  ++ D +     V   RL L E T  V+     +L I T  KM
Sbjct: 542  ELATTFTAFYEKCPVLKADDD----DVRASRLALCELTLGVLVDGLSLLGIETPEKM 594



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 50  DFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVN 109
           D Q N AMAL K        KNP    + +AS +   L  +  +  ++D +E A PGF+N
Sbjct: 41  DVQVNAAMALAKKVG-----KNP----REVASAIVEALRADDEVMALVDDVEIAGPGFLN 91

Query: 110 VFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVL-VDFSSPNIARK 152
           + LS  +   Q   I+ +G        K  ++ +D+SSPN+A++
Sbjct: 92  ITLSTDWVAAQASTILADGSLGVAPAAKTEIIPIDYSSPNVAKE 135


>gi|121635178|ref|YP_975423.1| arginyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|433469688|ref|ZP_20427103.1| arginine--tRNA ligase [Neisseria meningitidis 98080]
 gi|433495022|ref|ZP_20452088.1| arginine--tRNA ligase [Neisseria meningitidis NM762]
 gi|433526471|ref|ZP_20483100.1| arginine--tRNA ligase [Neisseria meningitidis 69096]
 gi|433539277|ref|ZP_20495751.1| arginine--tRNA ligase [Neisseria meningitidis 70030]
 gi|166232814|sp|A1KUU4.1|SYR_NEIMF RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|120866884|emb|CAM10643.1| arginyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|254673245|emb|CBA08256.1| Arginyl-tRNA synthetase [Neisseria meningitidis alpha275]
 gi|432202455|gb|ELK58518.1| arginine--tRNA ligase [Neisseria meningitidis 98080]
 gi|432229410|gb|ELK85098.1| arginine--tRNA ligase [Neisseria meningitidis NM762]
 gi|432260231|gb|ELL15491.1| arginine--tRNA ligase [Neisseria meningitidis 69096]
 gi|432272769|gb|ELL27875.1| arginine--tRNA ligase [Neisseria meningitidis 70030]
          Length = 572

 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 140/352 (39%), Positives = 187/352 (53%), Gaps = 55/352 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L   
Sbjct: 193 RAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLG----- 713
              GES Y   ++ +V  L +KG                          + +K G     
Sbjct: 253 DVAGESKYNDDLQAVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLY 312

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++YV D  Q +HF  L   ++KAG L P      FVGFG +
Sbjct: 313 ASTDLACLRYRVGTLHADRLLYVVDHRQALHFEQLFTTSRKAGYL-PENVGAAFVGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL E + R+   +K+KN   EL   E ++  + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKN--PELGADEAAKIGKTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG    D P
Sbjct: 430 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAGEWDADAP 481



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 142/350 (40%), Positives = 197/350 (56%), Gaps = 35/350 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  EVA PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVADA----LAGNA----VIESAEVAGPGFI 82

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N+ L   +  + I+  + +   GV     +K   V++D+SSPN+AKEMHVGHLRS+IIGD
Sbjct: 83  NLRLRPEFLAQNIQTALNDARFGV--AKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGD 140

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
           +ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K R
Sbjct: 141 SISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRAAKVR 198

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GES 478
           FDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L      GES
Sbjct: 199 FDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGES 258

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDLA 533
            Y   ++ +V  L +KGL   DDG K+++ ++     G     IV K  GGF Y ++DLA
Sbjct: 259 KYNDDLQAVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLA 318

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDV 583
            +R R+    AD ++YV D  Q +HF  L        T SR   YL  +V
Sbjct: 319 CLRYRVGTLHADRLLYVVDHRQALHFEQLF-------TTSRKAGYLPENV 361



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   E ++  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG    D        P  L    E  LA  LL+  +VL  V      H+L  
Sbjct: 465  RVQSVFRKAGEWDAD-------APTVLTEPLEKQLAAELLKFENVLQSVADTAYPHYLAA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY I+T FS FY+ C  ++  AEG  +     RL LA+ T   +K+  D+L I  +  M
Sbjct: 518  YLYQIATLFSRFYEACPILK--AEGASR---NSRLQLAKLTGDTLKQGLDLLGIDVLDVM 572



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 20/128 (15%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  E A PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVADA----LAGNA----VIESAEVAGPGFI 82

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIH 165
           N+ L   +  + ++  + +   GV     +K   V++D+SSPN+A++      HL S I 
Sbjct: 83  NLRLRPEFLAQNIQTALNDARFGV--AKTDKPQTVVIDYSSPNLAKE--MHVGHLRSSII 138

Query: 166 DILISKAI 173
              IS+ +
Sbjct: 139 GDSISRVL 146


>gi|455739159|ref|YP_007505425.1| Arginyl-tRNA synthetase [Morganella morganii subsp. morganii KT]
 gi|455420722|gb|AGG31052.1| Arginyl-tRNA synthetase [Morganella morganii subsp. morganii KT]
          Length = 576

 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 145/408 (35%), Positives = 218/408 (53%), Gaps = 45/408 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD     +Q A    G      A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQAILSD----KIQQALISAGAPLDCDAIVKQSAKAQFGDYQANGVMAAAKKMG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P  +A+ +  ++         L  + +K E+A PGF+N+FLS  +   Q++  + + 
Sbjct: 53  -MPPRQLAEKVIELL--------DLDGIAEKTEIAGPGFINIFLSPDWLTTQLETALADD 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
               T  + + + +D+S+PN+AK+MHVGHLRSTIIGD  +R  EYLGH V+R NHVGDWG
Sbjct: 104 KLGLTPVEPMTIAIDYSAPNVAKQMHVGHLRSTIIGDAAARTQEYLGHKVIRCNHVGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+ K  +       +ADL+AFY+E+KK +DEDE+F +RA   VV LQ  D 
Sbjct: 164 TQFGMLIAYLE-KMQNEDAGDMALADLEAFYREAKKHYDEDEVFAERARGYVVKLQGGDE 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDD 501
             +  W  + D++ +  Q+ Y+RLNVTLTE    GES Y   +  +V  L  + + E  +
Sbjct: 223 YCRTMWRKLVDITMQQNQETYNRLNVTLTEDDVMGESLYNDMLPGIVSDLLNRRIAEESE 282

Query: 502 GRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
           G  +++        GE  G I   I K DGG+ Y T+D+A  + R +   AD ++Y  D 
Sbjct: 283 GAIVVYLDEFKNKEGEPMGVI---IRKKDGGYLYTTTDIACAKYRHDVLHADRVLYYIDS 339

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
            Q  H  L++  TI+     R   Y+   +   +H+      FGM++ 
Sbjct: 340 RQ--HQHLMQAWTIV-----RKAGYIPESMTLEHHM------FGMMLG 374



 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 196/354 (55%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R  EYLGH V+R NHVGDWGTQFGMLIA+L+ K  +       +ADL+AFY
Sbjct: 135 STIIGDAAARTQEYLGHKVIRCNHVGDWGTQFGMLIAYLE-KMQNEDAGDMALADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE+F +RA   VV LQ  D   +  W  + D++ +  Q+ Y+RLNVTLTE 
Sbjct: 194 REAKKHYDEDEVFAERARGYVVKLQGGDEYCRTMWRKLVDITMQQNQETYNRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVP-----------------YLEKKGN-------LSLTKKLG---- 713
              GES Y   +  +V                  YL++  N       + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVSDLLNRRIAEESEGAIVVYLDEFKNKEGEPMGVIIRKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRHDVLHADRVLYYIDSRQHQHLMQAWTIVRKAGYI-PESMTLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T++LS+LLDE + R+   +++KN  +++   EL +  + V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTIRLSDLLDEAVERAEKLIREKN--SDMPEDELKQLAEVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+AS+ + A I+++   +P
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASVFKRADIDADSLTQP 484



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + +++++   EL +  + V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 406  REKNSDMPEDELKQLAEVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+ + A I+++ L     + P+ L  + E  LA  LL+  + +  V R+   H +C 
Sbjct: 466  RVASVFKRADIDADSL-----TQPIILTDDHERQLAARLLQFEETITAVAREGLPHMMCS 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY++C  +  ++E     +   RL LA  T K +K   D L I TV KM
Sbjct: 521  YLYDLAGLFSGFYEHCPILAAESE----ELRQSRLKLALLTQKTLKAGLDTLGIGTVEKM 576



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 17/144 (11%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD     +Q A    G      A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQAILSD----KIQQALISAGAPLDCDAIVKQSAKAQFGDYQANGVMAAAKKMG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
              P  +A+ +  ++         L  + +K E A PGF+N+FLS  +   Q++  + + 
Sbjct: 53  -MPPRQLAEKVIELL--------DLDGIAEKTEIAGPGFINIFLSPDWLTTQLETALADD 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
               T  + + + +D+S+PN+A++
Sbjct: 104 KLGLTPVEPMTIAIDYSAPNVAKQ 127


>gi|152988976|ref|YP_001351107.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|452880231|ref|ZP_21957237.1| arginyl-tRNA ligase [Pseudomonas aeruginosa VRFPA01]
 gi|166232823|sp|A6VDH2.1|SYR_PSEA7 RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|150964134|gb|ABR86159.1| arginyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|452183306|gb|EME10324.1| arginyl-tRNA ligase [Pseudomonas aeruginosa VRFPA01]
          Length = 587

 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 144/364 (39%), Positives = 203/364 (55%), Gaps = 38/364 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P D+A  +       L  +  LAKV    E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLATRLVEA----LPAHEQLAKV----EIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F   ++    +   + +   GV+        RV++D SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQDHIWLAASLDRALADERLGVRKA--GPAQRVVIDLSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY+ +KKR
Sbjct: 146 AVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AQAELHDLEVFYRAAKKR 202

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+    +GES
Sbjct: 203 FDESPEFADRARELVVRLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMADVKGES 262

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   + Q+V  L  KGLL  D+G   ++ E     +   +P+ + K+ GG+ Y T+DLA
Sbjct: 263 AYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFRNAEGNPLPVIVQKAGGGYLYATTDLA 322

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
           A+R R     AD  +Y  D  Q +HF+ + E       ++R   ++  D + L H+G +G
Sbjct: 323 AMRYRHNVLHADRALYFVDQRQALHFQQVFE-------VARRAGFVPAD-MELEHMG-FG 373

Query: 594 TQFG 597
           T  G
Sbjct: 374 TMNG 377



 Score =  213 bits (541), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 185/355 (52%), Gaps = 60/355 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AQAELHDLEVFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  DPD  + W    ++S    QK+YDRL V L+  
Sbjct: 197 RAAKKRFDESPEFADRARELVVRLQAGDPDCLRLWTRFNEISLSHCQKVYDRLGVKLSMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   + Q+V  L  KG L+                       + +K G     
Sbjct: 257 DVKGESAYNDDLAQVVADLTAKGLLTEDNGALCVFLEEFRNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q +HF+ + E A++AG + P    ++ +GFG +
Sbjct: 317 ATTDLAAMRYRHNVLHADRALYFVDQRQALHFQQVFEVARRAGFV-PADMELEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRH------TELTPTELSEAQQAV 808
            G D + FKTR G TVKL +LL+E   R+   +K++N              +L E  + V
Sbjct: 376 NGADGRPFKTRDGGTVKLIDLLEEAESRAYALVKERNEQRVERGEEPFDEAQLREIGRVV 435

Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
               +KYADLS +R  DY F+F+ ML   GNTA YLLYA TR+AS+ R  G   E
Sbjct: 436 GIDSVKYADLSKHRTSDYSFNFELMLSFEGNTAPYLLYACTRVASVFRKLGQGRE 490



 Score =  100 bits (248), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 9/194 (4%)

Query: 926  RGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 985
            R Y L +  ++ + +         +L E  + V    +KYADLS +R  DY F+F+ ML 
Sbjct: 403  RAYALVKERNEQRVERGEEPFDEAQLREIGRVVGIDSVKYADLSKHRTSDYSFNFELMLS 462

Query: 986  DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045
              GNTA YLLYA TR+AS+ R  G   E L        + LE  +E ALA  L +  D+L
Sbjct: 463  FEGNTAPYLLYACTRVASVFRKLGQGREQL-----GGRIVLEQPQELALAAQLAQFGDLL 517

Query: 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMK 1105
              V      H LC YLY+++  FS FY++C  +  +   +  +    RL LA  T + ++
Sbjct: 518  NNVALKGVPHLLCAYLYELAGLFSSFYEHCPILTAEDPAQKDS----RLRLAALTGRTLE 573

Query: 1106 KCFDILNIRTVHKM 1119
            +  ++L ++T+ +M
Sbjct: 574  QGLELLGLKTLERM 587


>gi|453065283|gb|EMF06246.1| arginyl-tRNA ligase [Serratia marcescens VGH107]
 gi|453066345|gb|EMF07292.1| arginyl-tRNA ligase [Serratia marcescens VGH107]
          Length = 576

 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 236/443 (53%), Gaps = 54/443 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+ +A     D  A V  + +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQVLLSDKVSQAL-IAAGAPADCEAQVRPSAKA---QFGDYQANGVMSVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L  V  K+E+A PGF+N+FL+  +   Q   ++   
Sbjct: 53  -MPPRQLAEKVVQLL--------DLGDVAGKVEIAGPGFINIFLNSDWVARQADQVLNAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V+P T      +++D+S+PN+AKEMHVGHLRSTIIGD  +R  E+LGH V+R N
Sbjct: 104 KLGIAPVEPQT------IVIDYSAPNVAKEMHVGHLRSTIIGDAAARTQEFLGHKVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASDMGLSDLEQFYREAKKHYDEDAEFAERARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D    K W  + D++    Q  Y+RLNVTLTE    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDQYCLKMWRKLVDITMAQNQLTYNRLNVTLTEDDVMGESLYNAMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L    +G  +++    +++   PM ++  K DGG+ Y T+D+A  + R E   A+ ++Y 
Sbjct: 277 LAVESEGATVVFLDEYQNKDGDPMGVIIQKKDGGYLYTTTDIACAKYRYETLGANRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  P +
Sbjct: 337 IDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHM------FGMMLG--KDGKP-F 380

Query: 611 LTKSPPIADLQAFYKESKKRFDE 633
            T+S     L     E+ +R ++
Sbjct: 381 KTRSGGTVKLSDLLDEAIERAEQ 403



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 186/361 (51%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R  E+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTQEFLGHKVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+E+KK +DED  F +RA   VV LQ  D    K W  + D++    Q  Y+RL
Sbjct: 187 SDLEQFYREAKKHYDEDAEFAERARAYVVKLQGGDQYCLKMWRKLVDITMAQNQLTYNRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLTE    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTEDDVMGESLYNAMLPGIVADLKAKGLAVESEGATVVFLDEYQNKDGDPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGANRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   +  KN   ++   E+    + 
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAIERAEQLIAGKN--PDMPQDEMKTVARV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+ + AGI+      
Sbjct: 424 VGIGAVKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFKRAGIDESSLSL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 9/179 (5%)

Query: 941  NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
             ++ ++   E+    + V  G +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR
Sbjct: 407  GKNPDMPQDEMKTVARVVGIGAVKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTR 466

Query: 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
            +AS+ + AGI+   L     S P++L  E+E ALA  LL+  +VL  V R+   H +C Y
Sbjct: 467  VASVFKRAGIDESSL-----SLPLTLTEEREIALATRLLQFEEVLTTVAREGTPHVMCSY 521

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            LYD++  FS FY++C  +  D+E         RL LA  T+K +K   D L I TV +M
Sbjct: 522  LYDLAGLFSGFYEHCQILNADSE----ETRQSRLKLALLTSKTLKTGLDTLGIETVERM 576



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+ +A     D  A V  + +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQVLLSDKVSQAL-IAAGAPADCEAQVRPSAKA---QFGDYQANGVMSVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++         L  V  K+E A PGF+N+FL+  +   Q   ++   
Sbjct: 53  -MPPRQLAEKVVQLL--------DLGDVAGKVEIAGPGFINIFLNSDWVARQADQVLNAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V+P T      +++D+S+PN+A++
Sbjct: 104 KLGIAPVEPQT------IVIDYSAPNVAKE 127


>gi|226329867|ref|ZP_03805385.1| hypothetical protein PROPEN_03780 [Proteus penneri ATCC 35198]
 gi|225200662|gb|EEG83016.1| arginine--tRNA ligase [Proteus penneri ATCC 35198]
          Length = 535

 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 136/350 (38%), Positives = 205/350 (58%), Gaps = 25/350 (7%)

Query: 289 LAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKE 348
           +  + DK+E+A PGF+N+FLS  +  +Q +D +V+     T  +   +++D+SSPN+AK+
Sbjct: 27  ITDIADKVEIAGPGFINIFLSPQWVAKQAEDALVDEHLNVTPVEPQTIVIDYSSPNVAKQ 86

Query: 349 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 408
           MHVGHLRSTIIGD  +R L +LGH+VVR NH+GDWGTQFGMLIA+L+ K  +       +
Sbjct: 87  MHVGHLRSTIIGDASARTLSFLGHNVVRANHLGDWGTQFGMLIAYLEKKQNEN-AADMAL 145

Query: 409 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 468
           +DL+ FY+E+KK +DEDE+F +RA   VV LQ  D   +  W  + D++ +  Q  Y RL
Sbjct: 146 SDLEEFYREAKKHYDEDEVFAERARNYVVKLQSGDEYCRTMWRKLVDITMQQNQATYQRL 205

Query: 469 NVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--K 520
           NVTLTE    GES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K
Sbjct: 206 NVTLTEDDIMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIVQK 265

Query: 521 SDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLG 580
            DGG+ Y T+D+A  + R E   AD ++Y  D  Q  H  L++  TI+     R   Y+ 
Sbjct: 266 KDGGYLYTTTDIACAKYRHETLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAGYIP 318

Query: 581 HDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
            D + L H       FGM++   +D  P + T+S     L     E+++R
Sbjct: 319 -DSMSLEH-----HMFGMMLG--KDGRP-FKTRSGGTIRLTDLLDEAQER 359



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/354 (37%), Positives = 189/354 (53%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R L +LGH+VVR NH+GDWGTQFGMLIA+L+ K  +       ++DL+ FY
Sbjct: 94  STIIGDASARTLSFLGHNVVRANHLGDWGTQFGMLIAYLEKKQNEN-AADMALSDLEEFY 152

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE+F +RA   VV LQ  D   +  W  + D++ +  Q  Y RLNVTLTE 
Sbjct: 153 REAKKHYDEDEVFAERARNYVVKLQSGDEYCRTMWRKLVDITMQQNQATYQRLNVTLTED 212

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 213 DIMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEYKNKEGEPMGVIVQKKDGGYLY 272

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P+   ++   FG++
Sbjct: 273 TTTDIACAKYRHETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYI-PDSMSLEHHMFGMM 331

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + FKTRSG T++L++LLDE   R+   + +KN   ++   EL+   + V  G +K
Sbjct: 332 LGKDGRPFKTRSGGTIRLTDLLDEAQERARALIAEKN--PDMDKDELNNVARVVGIGAVK 389

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS NR  DY+F +D ML   GNTA Y+ YAYTR+ASI + A I+     +P
Sbjct: 390 YADLSKNRTTDYIFDWDLMLSFEGNTAPYMQYAYTRVASIFKRADIDENALTQP 443



 Score =  131 bits (329), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 104/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL+   + V  G +KYADLS NR  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 367  KNPDMDKDELNNVARVVGIGAVKYADLSKNRTTDYIFDWDLMLSFEGNTAPYMQYAYTRV 426

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            ASI + A I+   L     + P+ L    E  LA  L++ ++ +M V+R+   H +C YL
Sbjct: 427  ASIFKRADIDENAL-----TQPIVLTQSHERQLALRLVQFDETIMQVSREGTPHVMCAYL 481

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++ AFS FY+NC  +  + E   ++    RL LA  TAK +K+  D L I TV +M
Sbjct: 482  YDLAQAFSGFYENCPILSAEDENTRQS----RLKLARLTAKTLKQGLDTLGIETVDRM 535



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 39/60 (65%)

Query: 93  LAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           +  + DK+E A PGF+N+FLS  +  +Q +D +V+     T  +   +++D+SSPN+A++
Sbjct: 27  ITDIADKVEIAGPGFINIFLSPQWVAKQAEDALVDEHLNVTPVEPQTIVIDYSSPNVAKQ 86


>gi|145297303|ref|YP_001140144.1| arginyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|418362057|ref|ZP_12962701.1| arginyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           01-B526]
 gi|142850075|gb|ABO88396.1| arginyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|356686692|gb|EHI51285.1| arginyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           01-B526]
          Length = 581

 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 145/397 (36%), Positives = 212/397 (53%), Gaps = 44/397 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K       +KNP ++A +I          N   + +I K+E+A PGF+
Sbjct: 41  GDLATNLAMLLAK-----PARKNPRELAAAIIE--------NLPASDLIAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F  + +   Q++ ++ +      L     V+VD+S+PN+AKEM V H+RST++GD  +
Sbjct: 88  NFFFDQRWLAGQVETMVTSANANVKLPTPQTVVVDYSAPNVAKEMAVHHIRSTVLGDVAA 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 424
           R LE+LGH VVR NH+GDWGTQFGMLIA+L+ K  +       + DL+AFY ++K+ +DE
Sbjct: 148 RALEFLGHKVVRANHIGDWGTQFGMLIAYLE-KMANEHASDMALKDLEAFYTQAKRCYDE 206

Query: 425 DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQ 481
           DE F +RA   VV LQ  D   +  W+ + D++    Q  YDRLNV+LT +   GES Y 
Sbjct: 207 DEAFAERARNYVVKLQGGDEYCRTMWKKLVDMTMEQNQINYDRLNVSLTNKDIMGESMYN 266

Query: 482 KHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLA 533
             + ++V  L+ KGL    +G  +++        GE  G I   I KSDGGF Y T+D+A
Sbjct: 267 DMLPEIVADLKAKGLAVESEGATVVFLDEFKNKDGEPMGVI---IQKSDGGFLYTTTDIA 323

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
             + R E   AD ++Y  D  Q  H        +   TI+R   Y+   V   +H     
Sbjct: 324 CAKYRYETLGADRVMYFIDSRQHQHL-------MQAWTITRKAGYVPESVPLEHHA---- 372

Query: 594 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
             FGM++   +D  P Y T+S     L     E+++R
Sbjct: 373 --FGMMLG--KDGRP-YKTRSGGTVKLVDLLNEAEER 404



 Score =  217 bits (552), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/348 (38%), Positives = 188/348 (54%), Gaps = 54/348 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST++GD  +R LE+LGH VVR NH+GDWGTQFGMLIA+L+ K  +       + DL+AFY
Sbjct: 139 STVLGDVAARALEFLGHKVVRANHIGDWGTQFGMLIAYLE-KMANEHASDMALKDLEAFY 197

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
            ++K+ +DEDE F +RA   VV LQ  D   +  W+ + D++    Q  YDRLNV+LT +
Sbjct: 198 TQAKRCYDEDEAFAERARNYVVKLQGGDEYCRTMWKKLVDMTMEQNQINYDRLNVSLTNK 257

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   + ++V  L+ KG                                     
Sbjct: 258 DIMGESMYNDMLPEIVADLKAKGLAVESEGATVVFLDEFKNKDGEPMGVIIQKSDGGFLY 317

Query: 705 ---NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +++  K     LG   ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 318 TTTDIACAKYRYETLGADRVMYFIDSRQHQHLMQAWTITRKAGYV-PESVPLEHHAFGMM 376

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + +KTRSG TVKL +LL+E   R+   L+ +N  ++L+  E +    A+A G +K
Sbjct: 377 LGKDGRPYKTRSGGTVKLVDLLNEAEERATALLESRN--SDLSAEEKANVVNAIAMGAVK 434

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           YADLS NR  DY+F +D ML   GNTA YL YAYTRI SI R A I++
Sbjct: 435 YADLSKNRTTDYIFDWDMMLSFEGNTAPYLQYAYTRIQSIFRKANIDA 482



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++R+++L+  E +    A+A G +KYADLS NR  DY+F +D ML   GNTA YL YAYT
Sbjct: 410  ESRNSDLSAEEKANVVNAIAMGAVKYADLSKNRTTDYIFDWDMMLSFEGNTAPYLQYAYT 469

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI R A I++  L        V+L  E E  LA+ L++ +D +  V      H LC 
Sbjct: 470  RIQSIFRKANIDASTL-----IGNVTLNEEAEEVLAQKLIQFSDAVNGVADKGMPHLLCT 524

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++S  F  FY+ C  I KD  G  +     RLLL  ATAKV+K    +L I T+ +M
Sbjct: 525  YLYELSGNFMTFYEAC-PINKD--GVDEATRQSRLLLCTATAKVLKLGLGVLGIHTLERM 581



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K       +KNP ++A +I          N   + +I K+E A PGF+
Sbjct: 41  GDLATNLAMLLAK-----PARKNPRELAAAIIE--------NLPASDLIAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           N F  + +   Q++ ++ +      L     V+VD+S+PN+A++
Sbjct: 88  NFFFDQRWLAGQVETMVTSANANVKLPTPQTVVVDYSAPNVAKE 131


>gi|159035826|ref|YP_001535079.1| arginyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157914661|gb|ABV96088.1| arginyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 572

 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 134/351 (38%), Positives = 193/351 (54%), Gaps = 29/351 (8%)

Query: 226 LGDKTASVASTNEKYV---HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSE 282
           LG   A+VA      V    +  D+QC+ A++L +        + P DIA        +E
Sbjct: 11  LGPAFAAVAGAPVDPVLRRSQHADYQCDAALSLARRLG-----RRPRDIA--------AE 57

Query: 283 LATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVD 339
           +     LA +   + V+ PGF+N+ ++    G  +    V+   GV P    +   V+VD
Sbjct: 58  VLGQVELADLCSAVAVSGPGFINLTVADSALGTLLSTAAVDSRLGVAPSAATET--VIVD 115

Query: 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFP 399
           +SSPN+AKEMHVGHLR T+IGD   RLLE+ GH V++ NH+GDWGT FGMLI HL D   
Sbjct: 116 YSSPNVAKEMHVGHLRGTVIGDAAVRLLEWRGHQVIKANHLGDWGTPFGMLIEHLLDLGE 175

Query: 400 DYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRR 459
                   + DL +FYK ++ +FD D+ F++RA + VVALQR D    + W ++   S +
Sbjct: 176 SEAADELSVGDLDSFYKAARVKFDADDAFRERAQRRVVALQRGDELTLRLWRLLVAESEK 235

Query: 460 DFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLL-ELDDGRKI----MWGEDR 511
            F  +YD+L V LTE   RGES+Y + +  +   L++ GLL E  D   +      G D 
Sbjct: 236 YFLTVYDQLGVLLTERDFRGESYYNEQLAPVTDELDRLGLLRESGDAACVFPAGFVGRDG 295

Query: 512 GSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
             +P+ + K DGGF Y  +DLAAIR R ++  A  ++YV  L Q  HF L+
Sbjct: 296 QPLPIIVRKRDGGFGYGATDLAAIRHRTQDLGATRLLYVVGLPQRQHFELV 346



 Score =  223 bits (567), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 134/354 (37%), Positives = 187/354 (52%), Gaps = 59/354 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
            T+IGD   RLLE+ GH V++ NH+GDWGT FGMLI HL D           + DL +FY
Sbjct: 132 GTVIGDAAVRLLEWRGHQVIKANHLGDWGTPFGMLIEHLLDLGESEAADELSVGDLDSFY 191

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           K ++ +FD D+ F++RA + VVALQR D    + W ++   S + F  +YD+L V LTE 
Sbjct: 192 KAARVKFDADDAFRERAQRRVVALQRGDELTLRLWRLLVAESEKYFLTVYDQLGVLLTER 251

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLG---------------------------- 713
             RGES+Y    EQL P  ++   L L ++ G                            
Sbjct: 252 DFRGESYYN---EQLAPVTDELDRLGLLRESGDAACVFPAGFVGRDGQPLPIIVRKRDGG 308

Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
                                 ++YV  L Q  HF L+   A +AG L+P   R + +GF
Sbjct: 309 FGYGATDLAAIRHRTQDLGATRLLYVVGLPQRQHFELVYAVAWQAGWLSP-PARAEHLGF 367

Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYG 811
           G +LG D K  ++R+GD++KL  LL+E + R+ +  + KN   +L+ TE+++  +AV  G
Sbjct: 368 GSILGSDGKMLRSRTGDSIKLVGLLEEAVTRAAELARQKN--PDLSATEVADVARAVGIG 425

Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDP 865
            IKYADLS +RN DYVF + +ML   GNTA YL YA+ RI SI R A I    P
Sbjct: 426 AIKYADLSTDRNKDYVFDWQRMLSLDGNTAPYLQYAHARIRSIFRRAEIEQFTP 479



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 11/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ +L+ TE+++  +AV  G IKYADLS +RN DYVF + +ML   GNTA YL YA+ 
Sbjct: 404  RQKNPDLSATEVADVARAVGIGAIKYADLSTDRNKDYVFDWQRMLSLDGNTAPYLQYAHA 463

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI R A I           TP+++ H  E ALA  L     V+  V + L  H L  
Sbjct: 464  RIRSIFRRAEIEQ------FTPTPITVGHPAEHALALELAGFGAVVASVEQTLQFHRLAG 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL+ ++T FS FY++C  +  +       V   RL L + TA+V+++   +L I T  +M
Sbjct: 518  YLHTLATTFSGFYEHCPVLRAE-----DAVRDSRLALCDLTARVLRQGLYLLGIATPDRM 572



 Score = 45.8 bits (107), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 21/129 (16%)

Query: 30  LGDKTASVASTNEKYV---HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSE 86
           LG   A+VA      V    +  D+QC+ A++L +        + P DIA        +E
Sbjct: 11  LGPAFAAVAGAPVDPVLRRSQHADYQCDAALSLARRLG-----RRPRDIA--------AE 57

Query: 87  LATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVD 143
           +     LA +   +  + PGF+N+ ++    G  +    V+   GV P    +   V+VD
Sbjct: 58  VLGQVELADLCSAVAVSGPGFINLTVADSALGTLLSTAAVDSRLGVAPSAATET--VIVD 115

Query: 144 FSSPNIARK 152
           +SSPN+A++
Sbjct: 116 YSSPNVAKE 124


>gi|410087785|ref|ZP_11284486.1| Arginyl-tRNA synthetase [Morganella morganii SC01]
 gi|409765779|gb|EKN49882.1| Arginyl-tRNA synthetase [Morganella morganii SC01]
          Length = 576

 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 145/408 (35%), Positives = 218/408 (53%), Gaps = 45/408 (11%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD     +Q A    G      A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQAILSD----KIQQALISAGAPLDCDAIVKQSAKAQFGDYQANGVMAAAKKMG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
              P  +A+ +  ++         L  + +K E+A PGF+N+FLS  +   Q++  + + 
Sbjct: 53  -MPPRQLAEKVIELL--------DLDGIAEKTEIAGPGFINIFLSPDWLTTQLETALADD 103

Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
               T  + + + +D+S+PN+AK+MHVGHLRSTIIGD  +R  EYLGH V+R NHVGDWG
Sbjct: 104 KLGLTPVEPMTIAIDYSAPNVAKQMHVGHLRSTIIGDAAARTQEYLGHKVIRCNHVGDWG 163

Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
           TQFGMLIA+L+ K  +       +ADL+AFY+E+KK +DEDE+F +RA   VV LQ  D 
Sbjct: 164 TQFGMLIAYLE-KMQNEDAGDMALADLEAFYREAKKHYDEDEVFAERARGYVVKLQGGDE 222

Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDD 501
             +  W  + D++ +  Q+ Y+RLNVTLTE    GES Y   +  +V  L  + + E  +
Sbjct: 223 YCRTMWRKLVDITMQQNQETYNRLNVTLTEDDVMGESLYNDMLPGIVSDLLNRRIAEESE 282

Query: 502 GRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
           G  +++        GE  G I   I K DGG+ Y T+D+A  + R +   AD ++Y  D 
Sbjct: 283 GAIVVYLDEFKNKEGEPMGVI---IRKKDGGYLYTTTDIACAKYRHDVLHADRVLYYIDS 339

Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
            Q  H  L++  TI+     R   Y+   +   +H+      FGM++ 
Sbjct: 340 RQ--HQHLMQAWTIV-----RKAGYIPESMTLEHHM------FGMMLG 374



 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 196/354 (55%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R  EYLGH V+R NHVGDWGTQFGMLIA+L+ K  +       +ADL+AFY
Sbjct: 135 STIIGDAAARTQEYLGHKVIRCNHVGDWGTQFGMLIAYLE-KMQNEDAGDMALADLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE+F +RA   VV LQ  D   +  W  + D++ +  Q+ Y+RLNVTLTE 
Sbjct: 194 REAKKHYDEDEVFAERARGYVVKLQGGDEYCRTMWRKLVDITMQQNQETYNRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVP-----------------YLEKKGN-------LSLTKKLG---- 713
              GES Y   +  +V                  YL++  N       + + KK G    
Sbjct: 254 DVMGESLYNDMLPGIVSDLLNRRIAEESEGAIVVYLDEFKNKEGEPMGVIIRKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRHDVLHADRVLYYIDSRQHQHLMQAWTIVRKAGYI-PESMTLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T++LS+LLDE + R+   +++KN  +++   EL +  + V  G +K
Sbjct: 373 LGKDGKPFKTRAGGTIRLSDLLDEAVERAEKLIREKN--SDMPEDELKQLAEVVGIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+AS+ + A I+++   +P
Sbjct: 431 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASVFKRADIDADSLTQP 484



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 104/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + +++++   EL +  + V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 406  REKNSDMPEDELKQLAEVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+ + A I+++ L     + P+ L  ++E  LA  LL+  + +  V R+   H +C 
Sbjct: 466  RVASVFKRADIDADSL-----TQPIILTDDRERQLAARLLQFEETITAVAREGLPHMMCS 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY++C  +  ++E     +   RL LA  T K +K   D L I TV KM
Sbjct: 521  YLYDLAGLFSGFYEHCPILAAESE----ELRQSRLKLALLTQKTLKAGLDTLGIGTVEKM 576



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 17/144 (11%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD     +Q A    G      A   +    +FGD+Q N  MA  K       
Sbjct: 1   MNIQAILSD----KIQQALISAGAPLDCDAIVKQSAKAQFGDYQANGVMAAAKKMG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
              P  +A+ +  ++         L  + +K E A PGF+N+FLS  +   Q++  + + 
Sbjct: 53  -MPPRQLAEKVIELL--------DLDGIAEKTEIAGPGFINIFLSPDWLTTQLETALADD 103

Query: 129 VQPPTLNKKLRVLVDFSSPNIARK 152
               T  + + + +D+S+PN+A++
Sbjct: 104 KLGLTPVEPMTIAIDYSAPNVAKQ 127


>gi|90408772|ref|ZP_01216917.1| arginyl-tRNA synthetase [Psychromonas sp. CNPT3]
 gi|90310116|gb|EAS38256.1| arginyl-tRNA synthetase [Psychromonas sp. CNPT3]
          Length = 582

 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 146/409 (35%), Positives = 220/409 (53%), Gaps = 43/409 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N A+ L K       K+NP    +++A ++   L T    + +I K E+A PGF+
Sbjct: 41  GDFASNLALMLAK-----PAKQNP----RALAELIVKNLPT----SDIIIKTEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLR-VLVDFSSPNIAKEMHVGHLRSTIIGDTI 363
           N F++  Y  +QI     +      L +  + V++D+SSPN+AKEMHVGHLRSTIIGD++
Sbjct: 88  NFFINPNYLEKQIDSAYASERLDVELTEVPQTVVIDYSSPNLAKEMHVGHLRSTIIGDSV 147

Query: 364 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 423
            R LE+ G++VVR NHVGDWGTQFGML+A++++   +       +A+L+ FY+ +K RFD
Sbjct: 148 VRALEFQGNNVVRQNHVGDWGTQFGMLLAYMEELRAEGQEIKKDLANLEVFYRAAKCRFD 207

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFY 480
           E E F +RA   VV LQ  + +    W    ++S    Q  Y RL V+L     RGES Y
Sbjct: 208 ESEAFAERARHLVVELQNGNEECLVLWTEFKEISISHCQDAYRRLGVSLERKDVRGESAY 267

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAI 535
              +  ++  L++KGLL+   G  +++      ++   +P+ I K DGGF Y TSDLAAI
Sbjct: 268 NDDLSNVIRDLKEKGLLQESQGANVVFLDRFKNKEGEPLPVIIQKKDGGFLYATSDLAAI 327

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 595
           R R     A+ ++Y  D  QG+HF+ + E       ++RL  ++  +   L H+      
Sbjct: 328 RYRQSVLNANRVLYFVDARQGLHFQQVFE-------VARLASFV-KETTPLEHMA----- 374

Query: 596 FGMLIAHLQDKFPDYLTKSPPIADL--------QAFYKESKKRFDEDEI 636
           FG ++      F      +P +ADL            KE  +   EDE+
Sbjct: 375 FGTVMGEDGKPFKTRTGSTPKLADLLTEAEERAYVLVKEKNQDMPEDEL 423



 Score =  212 bits (539), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 185/347 (53%), Gaps = 53/347 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ R LE+ G++VVR NHVGDWGTQFGML+A++++   +       +A+L+ FY
Sbjct: 140 STIIGDSVVRALEFQGNNVVRQNHVGDWGTQFGMLLAYMEELRAEGQEIKKDLANLEVFY 199

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K RFDE E F +RA   VV LQ  + +    W    ++S    Q  Y RL V+L   
Sbjct: 200 RAAKCRFDESEAFAERARHLVVELQNGNEECLVLWTEFKEISISHCQDAYRRLGVSLERK 259

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS------------------------LTKKLG---- 713
             RGES Y   +  ++  L++KG L                         + KK G    
Sbjct: 260 DVRGESAYNDDLSNVIRDLKEKGLLQESQGANVVFLDRFKNKEGEPLPVIIQKKDGGFLY 319

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  QG+HF+ + E A+ A  +    T ++ + FG V
Sbjct: 320 ATSDLAAIRYRQSVLNANRVLYFVDARQGLHFQQVFEVARLASFVKET-TPLEHMAFGTV 378

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +GED K FKTR+G T KL++LL E   R+   +K+KN+  ++   EL      V    +K
Sbjct: 379 MGEDGKPFKTRTGSTPKLADLLTEAEERAYVLVKEKNQ--DMPEDELRHIAAVVGIASVK 436

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           YADLS NR  DYVF+FD ML   GNTA YLLYAYTR+ASI + A I+
Sbjct: 437 YADLSKNRTSDYVFNFDSMLSFEGNTAPYLLYAYTRVASIFKKAKID 483



 Score =  127 bits (319), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ ++   EL      V    +KYADLS NR  DYVF+FD ML   GNTA YLLYAYT
Sbjct: 412  KEKNQDMPEDELRHIAAVVGIASVKYADLSKNRTSDYVFNFDSMLSFEGNTAPYLLYAYT 471

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI + A I+ + +     +  +S   EKE  LA  +++ N+++  VT+    H LC 
Sbjct: 472  RVASIFKKAKIDMDSI-----TQDISFTDEKEKDLANKIMQFNEIIKQVTKQGMPHFLCS 526

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +    E + ++    RL LA  TAK +K+   +L I T+ +M
Sbjct: 527  YLFELAGLFSSFYEACPILSAPTEAQKQS----RLKLAALTAKTLKQGLSLLGINTLERM 582



 Score = 44.3 bits (103), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 30/113 (26%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N A+ L K       K+NP    +++A ++   L T    + +I K E A PGF+
Sbjct: 41  GDFASNLALMLAK-----PAKQNP----RALAELIVKNLPT----SDIIIKTEIAGPGFI 87

Query: 109 NVFLS---------RVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           N F++           YA E++ D+ +  V P T      V++D+SSPN+A++
Sbjct: 88  NFFINPNYLEKQIDSAYASERL-DVELTEV-PQT------VVIDYSSPNLAKE 132


>gi|419798481|ref|ZP_14323889.1| arginine--tRNA ligase [Neisseria sicca VK64]
 gi|385694542|gb|EIG25138.1| arginine--tRNA ligase [Neisseria sicca VK64]
          Length = 572

 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 190/345 (55%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L   
Sbjct: 193 RAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   ++ +V  L +KG                                     
Sbjct: 253 DVAGESKYNDDLQPVVDDLVQKGLAVEDDGAKVVFLNEFKNKEGEPAAFIVQKQGGGFLY 312

Query: 705 ---NLS-LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +L+ L  ++G      ++YV D  Q +HF  L   ++KAG L P   + +F+GFG +
Sbjct: 313 ASTDLACLRYRIGRLKADRLLYVVDHRQALHFEQLFTTSRKAGYL-PEDAKAEFIGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL E + R+   +K+KN   EL   E ++  + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKN--PELGADEAAKIGKTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 430 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVLRKAG 474



 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 202/363 (55%), Gaps = 35/363 (9%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  EVA PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LAGNA----VIESAEVAGPGFI 82

Query: 305 NVFLSRVYAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           N+ L   +  + I  + +N  +      +K   V++D+SSPN+AKEMHVGHLRS+IIGD+
Sbjct: 83  NLRLRPEFLAQNIH-VALNDARFGVAKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGDS 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K RF
Sbjct: 142 ISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRAAKVRF 199

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESF 479
           DED  F   A + VV LQ  D      W+   D+S    Q +YD L + L      GES 
Sbjct: 200 DEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGESK 259

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDLAA 534
           Y   ++ +V  L +KGL   DDG K+++  +     G     IV K  GGF Y ++DLA 
Sbjct: 260 YNDDLQPVVDDLVQKGLAVEDDGAKVVFLNEFKNKEGEPAAFIVQKQGGGFLYASTDLAC 319

Query: 535 IRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGT 594
           +R RI   KAD ++YV D  Q +HF  L        T SR   YL  D  +   +G +GT
Sbjct: 320 LRYRIGRLKADRLLYVVDHRQALHFEQLF-------TTSRKAGYLPED-AKAEFIG-FGT 370

Query: 595 QFG 597
             G
Sbjct: 371 MMG 373



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   E ++  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG           + P  L    E  LA  LL+  DVL  V      H+L  
Sbjct: 465  RVQSVLRKAGEWD-------ATAPTVLTEPLEKQLAAELLKFEDVLQSVADTAYPHYLAN 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY I+T FS FY+ C  ++  AEG  +     RL LA+ T   +K+  D+L I  +  M
Sbjct: 518  YLYQIATLFSRFYEACPILK--AEGATR---NSRLQLAKLTGDTLKQGLDLLGIDVLDVM 572



 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 18/127 (14%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  E A PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LAGNA----VIESAEVAGPGFI 82

Query: 109 NVFLSRVYAGEQMKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHD 166
           N+ L   +  + +  + +N  +      +K   V++D+SSPN+A++      HL S I  
Sbjct: 83  NLRLRPEFLAQNIH-VALNDARFGVAKTDKPQTVVIDYSSPNLAKE--MHVGHLRSSIIG 139

Query: 167 ILISKAI 173
             IS+ +
Sbjct: 140 DSISRVL 146


>gi|340363107|ref|ZP_08685458.1| arginine--tRNA ligase [Neisseria macacae ATCC 33926]
 gi|339886631|gb|EGQ76270.1| arginine--tRNA ligase [Neisseria macacae ATCC 33926]
          Length = 572

 Score =  225 bits (574), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 190/345 (55%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L   
Sbjct: 193 RAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   ++ +V  L +KG                                     
Sbjct: 253 DVAGESKYNDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLY 312

Query: 705 ---NLS-LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +L+ L  ++G      ++YV D  Q +HF  L   ++KAG L P   + +F+GFG +
Sbjct: 313 ASTDLACLRYRIGRLKADRLLYVVDHRQALHFEQLFTTSRKAGYL-PEDAKAEFIGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL E + R+   +K+KN   EL   E ++  + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKN--PELGADEAAKIGKTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 430 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVLRKAG 474



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 146/362 (40%), Positives = 201/362 (55%), Gaps = 33/362 (9%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  EVA PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LAGNA----VIESAEVAGPGFI 82

Query: 305 NVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTI 363
           N+ L   +  + I   + +        +K   V++D+SSPN+AKEMHVGHLRS+IIGD+I
Sbjct: 83  NLRLRPEFLAQNIHAALNDARFGIAKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGDSI 142

Query: 364 SRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 423
           SR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K RFD
Sbjct: 143 SRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRAAKVRFD 200

Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFY 480
           ED  F   A + VV LQ  D      W+   D+S    Q +YD L + L      GES Y
Sbjct: 201 EDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGESKY 260

Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDLAAI 535
              ++ +V  L +KGL   DDG K+++ ++     G     IV K  GGF Y ++DLA +
Sbjct: 261 NDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLACL 320

Query: 536 RQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 595
           R RI   KAD ++YV D  Q +HF  L        T SR   YL  D  +   +G +GT 
Sbjct: 321 RYRIGRLKADRLLYVVDHRQALHFEQLF-------TTSRKAGYLPED-AKAEFIG-FGTM 371

Query: 596 FG 597
            G
Sbjct: 372 MG 373



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   E ++  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG           + P  L    E  LA  LL+  DVL  V      H+L  
Sbjct: 465  RVQSVLRKAGEWD-------ATAPTVLTEPLEKQLAAELLKFEDVLQSVADTAYPHYLAA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY  +T FS FY+ C  ++  AEG  +     RL LA+ T   +K+  D+L I  +  M
Sbjct: 518  YLYQTATLFSRFYEACPILK--AEGATR---NSRLQLAKLTGDTLKQGLDLLGIDVLDVM 572



 Score = 48.5 bits (114), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 16/126 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  E A PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LAGNA----VIESAEVAGPGFI 82

Query: 109 NVFLSRVYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDI 167
           N+ L   +  + +   + +        +K   V++D+SSPN+A++      HL S I   
Sbjct: 83  NLRLRPEFLAQNIHAALNDARFGIAKTDKPQTVVIDYSSPNLAKE--MHVGHLRSSIIGD 140

Query: 168 LISKAI 173
            IS+ +
Sbjct: 141 SISRVL 146


>gi|397171660|ref|ZP_10495059.1| arginyl-tRNA synthetase [Alishewanella aestuarii B11]
 gi|396086668|gb|EJI84279.1| arginyl-tRNA synthetase [Alishewanella aestuarii B11]
          Length = 579

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/354 (39%), Positives = 201/354 (56%), Gaps = 58/354 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD + R LE+ G  V+R NH+GDWGTQFGMLIAHL+DK  + +  +S  
Sbjct: 133 HLR----STIIGDAVVRTLEFWGDKVIRQNHMGDWGTQFGMLIAHLEDKLAEGVDLESVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++  F  ++   VV LQ  +   +K W++  D S +   ++Y +
Sbjct: 189 LADLEDFYRQAKKRFDDEAGFADKSRDYVVKLQSGNAHCQKLWQLFIDTSVKHSNEVYQK 248

Query: 677 LNVTLTE---RGESFY----QKHMEQLV---------------------------PYLEK 702
           LNVTLT+   + ES Y    Q  ++QLV                           P++ +
Sbjct: 249 LNVTLTDADIKPESAYNPMLQPIVDQLVAAGIAVEDQGALVVFLSELADKEGKPSPFIIQ 308

Query: 703 K---GNLSLTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRM 746
           K   G L  T  L              I+  TD  Q +HF+ +E  A+KAG+L  + T  
Sbjct: 309 KTGGGFLYATTDLAACQYRSHQLAADRIIIFTDARQALHFKQVELTARKAGLLRAD-TAY 367

Query: 747 DFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQ 806
           D   FG ++GED K FKTR+G TVKL+ELL+E + R+   +++K+  +EL+  E++E  +
Sbjct: 368 DHCPFGTMMGEDGKPFKTRTGGTVKLAELLEEAVVRADAVVREKS--SELSEQEIAEIAR 425

Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
            V  G +K+ADLS NR  DY+FS+D ML   G TA YL YAYTR  SI R A +
Sbjct: 426 KVGIGAVKFADLSKNRTSDYIFSWDAMLAFEGATAPYLQYAYTRGRSILRKAEV 479



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 208/370 (56%), Gaps = 37/370 (10%)

Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
           +  +  +  Q AF +LG    +  +  +    +FGD+Q N AM+  K  K      NP  
Sbjct: 3   IKQLLANKTQDAFIKLGLPAETNPAVTQSTRPEFGDYQINGAMSAAKQLK-----TNPRQ 57

Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVY-AGEQIKDI------IVN 323
           +A+ + +++  +   +        K+E+A PGF+NV L   + AGE  K        +  
Sbjct: 58  LAEQLVALLALDDLAS--------KVEIAGPGFINVTLKPEWLAGELAKAASDARLGVSA 109

Query: 324 GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
             QP T      V+VD+S+PN+AKEMHVGHLRSTIIGD + R LE+ G  V+R NH+GDW
Sbjct: 110 NPQPQT------VVVDYSAPNLAKEMHVGHLRSTIIGDAVVRTLEFWGDKVIRQNHMGDW 163

Query: 384 GTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           GTQFGMLIAHL+DK  + +  +S  +ADL+ FY+++KKRFD++  F  ++   VV LQ  
Sbjct: 164 GTQFGMLIAHLEDKLAEGVDLESVALADLEDFYRQAKKRFDDEAGFADKSRDYVVKLQSG 223

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLEL 499
           +   +K W++  D S +   ++Y +LNVTLT+   + ES Y   ++ +V  L   G+   
Sbjct: 224 NAHCQKLWQLFIDTSVKHSNEVYQKLNVTLTDADIKPESAYNPMLQPIVDQLVAAGIAVE 283

Query: 500 DDGRKIMW------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
           D G  +++       E + S P  I K+ GGF Y T+DLAA + R  +  AD I+  TD 
Sbjct: 284 DQGALVVFLSELADKEGKPS-PFIIQKTGGGFLYATTDLAACQYRSHQLAADRIIIFTDA 342

Query: 554 GQGVHFRLLE 563
            Q +HF+ +E
Sbjct: 343 RQALHFKQVE 352



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + +EL+  E++E  + V  G +K+ADLS NR  DY+FS+D ML   G TA YL YAYT
Sbjct: 409  REKSSELSEQEIAEIARKVGIGAVKFADLSKNRTSDYIFSWDAMLAFEGATAPYLQYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R  SI R A +        +   P+ L  E+E  LA  +LR  + L  V +D   + LC 
Sbjct: 469  RGRSILRKAEVAD------SFQAPIVLTAEQERLLAVKILRFEETLQQVMKDAQPNLLCS 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++++ F  FY+ C  ++   +G        RL+L+  +A+++ K  D+L I  + +M
Sbjct: 523  YLYELASLFMTFYEACPILK---DGVDPAERDSRLMLSIISARLLAKGLDLLGIEVMERM 579



 Score = 47.4 bits (111), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 26/145 (17%)

Query: 15  LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
           +  +  +  Q AF +LG    +  +  +    +FGD+Q N AM+  K       K NP  
Sbjct: 3   IKQLLANKTQDAFIKLGLPAETNPAVTQSTRPEFGDYQINGAMSAAKQL-----KTNPRQ 57

Query: 75  IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVY-AGEQMKDI------IVN 127
           +A+ + +++  +   +        K+E A PGF+NV L   + AGE  K        +  
Sbjct: 58  LAEQLVALLALDDLAS--------KVEIAGPGFINVTLKPEWLAGELAKAASDARLGVSA 109

Query: 128 GVQPPTLNKKLRVLVDFSSPNIARK 152
             QP T      V+VD+S+PN+A++
Sbjct: 110 NPQPQT------VVVDYSAPNLAKE 128


>gi|254429152|ref|ZP_05042859.1| arginyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196195321|gb|EDX90280.1| arginyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 584

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/346 (40%), Positives = 189/346 (54%), Gaps = 55/346 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQA 622
           STIIGD + R LE+LGH V+R NHVGDWGTQFGML+A+L+++  +   +  S  +A+L+ 
Sbjct: 140 STIIGDAVVRTLEFLGHTVIRQNHVGDWGTQFGMLLAYLEEQKAEEGERELSRELANLET 199

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+ +K+RFDE + F  RA   VV LQ  D      W     VS    Q IYDRL V+LT
Sbjct: 200 FYRAAKQRFDESDTFADRARALVVKLQSGDDYCLSLWAEFNQVSLSHCQAIYDRLGVSLT 259

Query: 683 E---RGESFYQKHMEQLVPYLEKKGNLS-------------------------------- 707
               RGES Y   + Q+V  L+ KG LS                                
Sbjct: 260 PSDVRGESAYNDDLAQVVADLDSKGLLSESQGAQCVFMDAFKNKEGEPLPVIVRKADGGY 319

Query: 708 ---------LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFG 752
                    L  + G      ++Y  D  Q +HF+ +   AK A  + P +T +  +GFG
Sbjct: 320 LYATSDLAALRYRAGTLQADRMLYFVDQRQALHFQQMFTLAKLAAFV-PEQTELAHMGFG 378

Query: 753 VVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGC 812
            + G D + FKTR G TVKL +LLDE  +R+   +++KN   +L   EL    ++V  G 
Sbjct: 379 TMNGPDGRPFKTRDGGTVKLVDLLDEAEQRAFALVQEKN--PQLDEDELRTIARSVGIGA 436

Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           +KYADLS NR+ DY+F+F++ML   GNTA YLLYAYTR+AS+ R A
Sbjct: 437 VKYADLSKNRSSDYIFNFEQMLSFEGNTAPYLLYAYTRVASVFRKA 482



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 208/366 (56%), Gaps = 37/366 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N A+ L K     G K  P D+A+ + + + S+ A        + K+++A PGF+
Sbjct: 41  GDFATNIALMLAK---PAGMK--PRDLAEKLIAALPSDSA--------VAKVDIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F +  +    +   + +   G+  P   +   V+VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQADDWLTGLLDSALADDFLGIDRP--EQPQTVVVDYSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQAFYKESK 419
            + R LE+LGH V+R NHVGDWGTQFGML+A+L+++  +   +  S  +A+L+ FY+ +K
Sbjct: 146 AVVRTLEFLGHTVIRQNHVGDWGTQFGMLLAYLEEQKAEEGERELSRELANLETFYRAAK 205

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           +RFDE + F  RA   VV LQ  D      W     VS    Q IYDRL V+LT    RG
Sbjct: 206 QRFDESDTFADRARALVVKLQSGDDYCLSLWAEFNQVSLSHCQAIYDRLGVSLTPSDVRG 265

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSD 531
           ES Y   + Q+V  L+ KGLL    G + ++      ++   +P+ + K+DGG+ Y TSD
Sbjct: 266 ESAYNDDLAQVVADLDSKGLLSESQGAQCVFMDAFKNKEGEPLPVIVRKADGGYLYATSD 325

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           LAA+R R    +AD ++Y  D  Q +HF+ +        T+++L  ++      L H+G 
Sbjct: 326 LAALRYRAGTLQADRMLYFVDQRQALHFQQMF-------TLAKLAAFVPEQ-TELAHMG- 376

Query: 592 WGTQFG 597
           +GT  G
Sbjct: 377 FGTMNG 382



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   +++KN   +L   EL    ++V  G +KYADLS NR+ DY+F+F++ML   GNT
Sbjct: 407  QRAFALVQEKN--PQLDEDELRTIARSVGIGAVKYADLSKNRSSDYIFNFEQMLSFEGNT 464

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYAYTR+AS+ R A     +  +A+ S    L  + E ALA  L++  +VL  V  
Sbjct: 465  APYLLYAYTRVASVFRKA-----ERDMASVSGDFLLNEDAEQALAARLVQFAEVLQNVAD 519

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H L  YLYD++  FS FY++C  +  + EG    +   RL LA  TA+ +K   ++
Sbjct: 520  KGQPHLLSTYLYDVAGLFSSFYEHCPILSSEDEG----IRNSRLKLAALTARTLKHGMEL 575

Query: 1111 LNIRTVHKM 1119
            L +  + +M
Sbjct: 576  LGLSPLERM 584



 Score = 40.8 bits (94), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 18/107 (16%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N A+ L K     G K  P D+A+ + + + S+ A        + K++ A PGF+
Sbjct: 41  GDFATNIALMLAK---PAGMK--PRDLAEKLIAALPSDSA--------VAKVDIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F +  +    +   + +   G+  P   +   V+VD+SSPN+A++
Sbjct: 88  NFFQADDWLTGLLDSALADDFLGIDRP--EQPQTVVVDYSSPNLAKE 132


>gi|421497309|ref|ZP_15944481.1| argS [Aeromonas media WS]
 gi|407183655|gb|EKE57540.1| argS [Aeromonas media WS]
          Length = 581

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/397 (36%), Positives = 213/397 (53%), Gaps = 44/397 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K       +KNP ++A +I   + +        + +I K+E+A PGF+
Sbjct: 41  GDLATNLAMLLAK-----PARKNPRELAAAIIEHLPA--------SDLIAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F    +   Q++ ++ +      L     V+VD+S+PN+AKEM V H+RST++GD  +
Sbjct: 88  NFFFDPSWLAGQVEAMVTSANANVKLPAPQTVVVDYSAPNVAKEMAVHHIRSTVLGDVAA 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 424
           R LE+LGH VVR NH+GDWGTQFGMLIA+L+ K  +       + DL+AFY ++K+ +DE
Sbjct: 148 RALEFLGHKVVRANHIGDWGTQFGMLIAYLE-KMANEHASDMELKDLEAFYTQAKRHYDE 206

Query: 425 DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQ 481
           DE F +RA   VV LQ  D   +  W+ + D++    Q+ YDRLN++L+ +   GES Y 
Sbjct: 207 DEAFAERARNYVVKLQGGDEYCRTMWKKLVDMTMEQNQRNYDRLNISLSNKDIMGESMYN 266

Query: 482 KHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLA 533
             + Q+V  L+ KGL    +G  +++        GE  G I   I KSDGGF Y T+D+A
Sbjct: 267 DMLPQIVADLKAKGLAVESEGATVVFLDEFKNKDGEPMGVI---IQKSDGGFLYTTTDIA 323

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
             + R E   AD ++Y  D  Q  H        +   TI+R   Y+   V   +H     
Sbjct: 324 CAKYRYETLGADRVMYFIDSRQHQHL-------MQAWTITRKAGYVPESVPLEHHA---- 372

Query: 594 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
             FGM++   +D  P Y T+S     L     E+++R
Sbjct: 373 --FGMMLG--KDGRP-YKTRSGGTVKLVDLLNEAEER 404



 Score =  220 bits (560), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 190/349 (54%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST++GD  +R LE+LGH VVR NH+GDWGTQFGMLIA+L+ K  +       + DL+AFY
Sbjct: 139 STVLGDVAARALEFLGHKVVRANHIGDWGTQFGMLIAYLE-KMANEHASDMELKDLEAFY 197

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
            ++K+ +DEDE F +RA   VV LQ  D   +  W+ + D++    Q+ YDRLN++L+ +
Sbjct: 198 TQAKRHYDEDEAFAERARNYVVKLQGGDEYCRTMWKKLVDMTMEQNQRNYDRLNISLSNK 257

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   + Q+V  L+ KG                                     
Sbjct: 258 DIMGESMYNDMLPQIVADLKAKGLAVESEGATVVFLDEFKNKDGEPMGVIIQKSDGGFLY 317

Query: 705 ---NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +++  K     LG   ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 318 TTTDIACAKYRYETLGADRVMYFIDSRQHQHLMQAWTITRKAGYV-PESVPLEHHAFGMM 376

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + +KTRSG TVKL +LL+E   R+   L+ +N  ++L+  E ++   A+A G +K
Sbjct: 377 LGKDGRPYKTRSGGTVKLVDLLNEAEERAAALLESRN--SDLSAEEKAKVVHAIAMGAVK 434

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA YL YAYTRI SI R   I++E
Sbjct: 435 YADLSKNRTTDYIFDWDMMLSFEGNTAPYLQYAYTRIQSIFRKVNIDAE 483



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 105/180 (58%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++R+++L+  E ++   A+A G +KYADLS NR  DY+F +D ML   GNTA YL YAYT
Sbjct: 410  ESRNSDLSAEEKAKVVHAIAMGAVKYADLSKNRTTDYIFDWDMMLSFEGNTAPYLQYAYT 469

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI R   I++E L     +  V+L  E E  LA+ L++ +D +  V      H LC 
Sbjct: 470  RIQSIFRKVNIDAEAL-----TGHVTLNEEAEEVLAQKLIQFSDAVNGVADKGMPHLLCT 524

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++S  F  FY+ C  I KD  G  +     RLLL  ATAKV+K    +L I T+ +M
Sbjct: 525  YLYELSGNFMTFYEAC-PINKD--GVDEATRNSRLLLCAATAKVLKLGLGVLGIYTLERM 581



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K       +KNP ++A +I   + +        + +I K+E A PGF+
Sbjct: 41  GDLATNLAMLLAK-----PARKNPRELAAAIIEHLPA--------SDLIAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           N F    +   Q++ ++ +      L     V+VD+S+PN+A++
Sbjct: 88  NFFFDPSWLAGQVEAMVTSANANVKLPAPQTVVVDYSAPNVAKE 131


>gi|448242569|ref|YP_007406622.1| arginyl-tRNA synthetase [Serratia marcescens WW4]
 gi|445212933|gb|AGE18603.1| arginyl-tRNA synthetase [Serratia marcescens WW4]
          Length = 576

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 236/443 (53%), Gaps = 54/443 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+ +A     D  A V  + +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQVLLSDKVSQAL-IAAGAPADCEAQVRPSAKA---QFGDYQANGVMSVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ +  ++         L  V  K+E+A PGF+N+FL+  +   Q   ++   
Sbjct: 53  -MPPRQLAEKVVQLL--------DLGDVAGKVEIAGPGFINIFLNSDWVARQADQVLNAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V+P T      +++D+S+PN+AKEMHVGHLRSTIIGD  +R  E+LGH V+R N
Sbjct: 104 KLGIAPVEPQT------IVIDYSAPNVAKEMHVGHLRSTIIGDAAARTQEFLGHKVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+E+KK +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KMQNENASDMGLSDLEQFYREAKKHYDEDAEFAERARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D    K W  + D++    Q  Y+RLNVTLTE    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDQYCLKMWRKLVDITMAQNQLTYNRLNVTLTEDDVMGESLYNAMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L    +G  +++    +++   PM ++  K DGG+ Y T+D+A  + R E   A+ ++Y 
Sbjct: 277 LAVESEGATVVFLDEYQNKDGDPMGVIIQKKDGGYLYTTTDIACAKYRYETLGANRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
            D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++   +D  P +
Sbjct: 337 IDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHM------FGMMLG--KDGKP-F 380

Query: 611 LTKSPPIADLQAFYKESKKRFDE 633
            T+S     L     E+ +R ++
Sbjct: 381 KTRSGGTVKLSDLLDEAIERAEQ 403



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 186/361 (51%), Gaps = 58/361 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD  +R  E+LGH V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 132 HLR----STIIGDAAARTQEFLGHKVIRANHVGDWGTQFGMLIAYLE-KMQNENASDMGL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           +DL+ FY+E+KK +DED  F +RA   VV LQ  D    K W  + D++    Q  Y+RL
Sbjct: 187 SDLEQFYREAKKHYDEDAEFAERARAYVVKLQGGDQYCLKMWRKLVDITMAQNQLTYNRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG------------------------NLSLTK 710
           NVTLTE    GES Y   +  +V  L+ KG                         + + K
Sbjct: 247 NVTLTEDDVMGESLYNAMLPGIVADLKAKGLAVESEGATVVFLDEYQNKDGDPMGVIIQK 306

Query: 711 KLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMD 747
           K G                       ++Y  D  Q  H        +KAG + P    ++
Sbjct: 307 KDGGYLYTTTDIACAKYRYETLGANRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVSLE 365

Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
              FG++LG+D K FKTRSG TVKLS+LLDE + R+   +  KN   ++   E+    + 
Sbjct: 366 HHMFGMMLGKDGKPFKTRSGGTVKLSDLLDEAIERAEQLIAGKN--PDMPQDEMKTVARV 423

Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
           V  G +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR+AS+ + AGI+      
Sbjct: 424 VGIGAVKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFKRAGIDESSLTL 483

Query: 868 P 868
           P
Sbjct: 484 P 484



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 9/179 (5%)

Query: 941  NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000
             ++ ++   E+    + V  G +KYADLS +R  DYVF +D ML   GNTA Y+ YAYTR
Sbjct: 407  GKNPDMPQDEMKTVARVVGIGAVKYADLSKSRTTDYVFDWDNMLAFEGNTAPYMQYAYTR 466

Query: 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEY 1060
            +AS+ + AGI+   L     + P++L  E+E ALA  LL+  +VL  V R+   H +C Y
Sbjct: 467  VASVFKRAGIDESSL-----TLPLTLTEEREIALATRLLQFEEVLTTVAREGTPHVMCSY 521

Query: 1061 LYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            LYD++  FS FY++C  +  D+E         RL LA  TAK +K   D L I TV +M
Sbjct: 522  LYDLAGLFSGFYEHCQILNADSE----ETRQSRLKLALLTAKTLKTGLDTLGIETVERM 576



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+ +A     D  A V  + +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQVLLSDKVSQAL-IAAGAPADCEAQVRPSAKA---QFGDYQANGVMSVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ +  ++         L  V  K+E A PGF+N+FL+  +   Q   ++   
Sbjct: 53  -MPPRQLAEKVVQLL--------DLGDVAGKVEIAGPGFINIFLNSDWVARQADQVLNAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V+P T      +++D+S+PN+A++
Sbjct: 104 KLGIAPVEPQT------IVIDYSAPNVAKE 127


>gi|349610037|ref|ZP_08889399.1| arginyl-tRNA synthetase [Neisseria sp. GT4A_CT1]
 gi|348610807|gb|EGY60489.1| arginyl-tRNA synthetase [Neisseria sp. GT4A_CT1]
          Length = 572

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 190/345 (55%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L   
Sbjct: 193 RAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   ++ +V  L +KG                                     
Sbjct: 253 DVAGESKYNDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLY 312

Query: 705 ---NLS-LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +L+ L  ++G      ++YV D  Q +HF  L   ++KAG L P   + +F+GFG +
Sbjct: 313 ASTDLACLRYRIGRLKADRLLYVVDHRQALHFEQLFTTSRKAGYL-PEDAKAEFIGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL E + R+   +K+KN   EL   E ++  + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKN--PELGADEAAKIGKTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 430 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAG 474



 Score =  222 bits (566), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 147/364 (40%), Positives = 202/364 (55%), Gaps = 37/364 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDFQ N  M   K       K+NP ++AQ     V   LA N     VI+  EVA PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQK----VVEALADNA----VIESAEVAGPGFI 82

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N+ L   +  + I   + +   G+     +K   V++D+SSPN+AKEMHVGHLRS+IIGD
Sbjct: 83  NLRLRPEFLAQNIHAALNDTRFGI--AETDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGD 140

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
           +ISR+LE++G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K R
Sbjct: 141 SISRVLEFMGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRAAKVR 198

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GES 478
           FDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L      GES
Sbjct: 199 FDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGES 258

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDLA 533
            Y   ++ +V  L +KGL   DDG K+++ ++     G     IV K  GGF Y ++DLA
Sbjct: 259 KYNDDLQPVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLA 318

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
            +R RI   KAD ++YV D  Q +HF  L        T SR   YL  D  +   +G +G
Sbjct: 319 CLRYRIGRLKADRLLYVVDHRQALHFEQLF-------TTSRKAGYLPED-AKAEFIG-FG 369

Query: 594 TQFG 597
           T  G
Sbjct: 370 TMMG 373



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   E ++  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG           + P  L    E  LA  LL+  DVL  V      H+L  
Sbjct: 465  RVQSVFRKAGEWD-------ATAPTVLTEPLEKQLAAELLKFEDVLQSVADTAYPHYLAA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY  +T FS FY+ C  ++  AEG  +     RL LA+ T   +K+  D+L I  +  M
Sbjct: 518  YLYQTATLFSRFYEACPILK--AEGATR---NSRLQLAKLTGDTLKQGLDLLGIDVLDVM 572



 Score = 46.6 bits (109), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 20/128 (15%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDFQ N  M   K       K+NP ++AQ     V   LA N     VI+  E A PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQK----VVEALADNA----VIESAEVAGPGFI 82

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIH 165
           N+ L   +  + +   + +   G+     +K   V++D+SSPN+A++      HL S I 
Sbjct: 83  NLRLRPEFLAQNIHAALNDTRFGI--AETDKPQTVVIDYSSPNLAKE--MHVGHLRSSII 138

Query: 166 DILISKAI 173
              IS+ +
Sbjct: 139 GDSISRVL 146


>gi|429744683|ref|ZP_19278152.1| arginine--tRNA ligase [Neisseria sp. oral taxon 020 str. F0370]
 gi|429162237|gb|EKY04574.1| arginine--tRNA ligase [Neisseria sp. oral taxon 020 str. F0370]
          Length = 572

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/344 (38%), Positives = 188/344 (54%), Gaps = 55/344 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+LE++G  V+R NHVGDWGTQFGML+A++ ++  D    +  ++DL+ FY
Sbjct: 135 SSIIGDSISRVLEFMGDSVIRQNHVGDWGTQFGMLVAYMVEQQKD--NAAFELSDLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D +  K W+   D+S    Q +YD L + LT  
Sbjct: 193 RSAKVRFDEDAAFADTAREYVVKLQGGDENVLKLWQQFVDISLGHAQAVYDTLGLKLTPA 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLG----- 713
              GES Y   ++  V  L ++G                          + +K G     
Sbjct: 253 DVAGESKYNPELQNTVDDLVRQGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLY 312

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++YV D  Q +HF  L   ++KAG L P   + +F+GFG +
Sbjct: 313 ASTDLACLRYRVGTLHADRLLYVVDHRQSLHFEQLFTTSRKAGYL-PENVKAEFIGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D + FKTRSGDTVKL +LLDE + R+   +K+KN   +L   + ++  Q V  G +K
Sbjct: 372 MGKDGRPFKTRSGDTVKLVDLLDEAVERAAALVKEKN--PDLGADDAAKIAQTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R A
Sbjct: 430 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKA 473



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 203/365 (55%), Gaps = 37/365 (10%)

Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
           FGD+Q N  M   K       K+NP ++AQ +A  ++           VI+  +VA PGF
Sbjct: 35  FGDYQINGVMGAAK-----QAKQNPRELAQKVADALSGN--------AVIESAQVAGPGF 81

Query: 304 VNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIG 360
           +N+ L   +    ++  + +   GV      +   V++D+SSPN+AKEMHVGHLRS+IIG
Sbjct: 82  INLCLKPDFLARHVQTALNDPRCGVAKKAAPQT--VVIDYSSPNLAKEMHVGHLRSSIIG 139

Query: 361 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK 420
           D+ISR+LE++G  V+R NHVGDWGTQFGML+A++ ++  D    +  ++DL+ FY+ +K 
Sbjct: 140 DSISRVLEFMGDSVIRQNHVGDWGTQFGMLVAYMVEQQKD--NAAFELSDLEQFYRSAKV 197

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGE 477
           RFDED  F   A + VV LQ  D +  K W+   D+S    Q +YD L + LT     GE
Sbjct: 198 RFDEDAAFADTAREYVVKLQGGDENVLKLWQQFVDISLGHAQAVYDTLGLKLTPADVAGE 257

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDL 532
           S Y   ++  V  L ++GL   DDG K+++ ++     G     IV K  GGF Y ++DL
Sbjct: 258 SKYNPELQNTVDDLVRQGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDL 317

Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592
           A +R R+    AD ++YV D  Q +HF  L        T SR   YL  + V+   +G +
Sbjct: 318 ACLRYRVGTLHADRLLYVVDHRQSLHFEQLF-------TTSRKAGYLPEN-VKAEFIG-F 368

Query: 593 GTQFG 597
           GT  G
Sbjct: 369 GTMMG 373



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ +L   + ++  Q V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KEKNPDLGADDAAKIAQTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R A    +D   AA+ T   L    E  LA  LL+  D+L  V      H+L  
Sbjct: 465  RVQSVFRKA----DDWDAAAELT---LAEPAEKQLAVELLKFEDILQNVADTGYPHYLAA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY ++T FS FY+ C  ++  AEG  +     RL LA  T  V+K+  D+L I  +  M
Sbjct: 518  YLYQLATLFSRFYEACPILK--AEGATR---NSRLQLARLTGNVLKQGLDLLGIDVLDVM 572



 Score = 48.1 bits (113), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 107/271 (39%), Gaps = 56/271 (20%)

Query: 48  FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
           FGD+Q N  M   K       K+NP ++AQ +A  ++           VI+  + A PGF
Sbjct: 35  FGDYQINGVMGAAK-----QAKQNPRELAQKVADALSGN--------AVIESAQVAGPGF 81

Query: 108 VNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           +N+ L   +    ++  + +   GV      +   V++D+SSPN+A++      HL S I
Sbjct: 82  INLCLKPDFLARHVQTALNDPRCGVAKKAAPQT--VVIDYSSPNLAKE--MHVGHLRSSI 137

Query: 165 HDILISKAI---AEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDV--FTHAV 219
               IS+ +    +   +Q       +Q       M     D  +    LSD+  F  + 
Sbjct: 138 IGDSISRVLEFMGDSVIRQNHVGDWGTQFGMLVAYMVEQQKDNAAFE--LSDLEQFYRSA 195

Query: 220 QVAFPELGDKTASVASTNEKYV--------------HKFGDFQCNDAMALCKIFKDKGEK 265
           +V F    D+ A+ A T  +YV               +F D     A A   ++   G K
Sbjct: 196 KVRF----DEDAAFADTAREYVVKLQGGDENVLKLWQQFVDISLGHAQA---VYDTLGLK 248

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKI 296
             P D+A         E   NP L   +D +
Sbjct: 249 LTPADVA--------GESKYNPELQNTVDDL 271


>gi|416238622|ref|ZP_11631502.1| arginyl-tRNA synthetase [Moraxella catarrhalis BC1]
 gi|326567939|gb|EGE18036.1| arginyl-tRNA synthetase [Moraxella catarrhalis BC1]
          Length = 575

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/350 (39%), Positives = 190/350 (54%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY
Sbjct: 135 STIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RAAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DTMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++  TD  Q +H +      +KAG + P++  M+   FG++
Sbjct: 314 TTTDIAAAAYRYHTLHADRVILFTDARQTLHAQQAWLITRKAGFV-PDEFVMEHFTFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   +K KN   +L+  E     +AVA G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEAIERATTLIKQKN--PDLSAEEKRAVVEAVAIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           Y+DLS NRN DYVF +D ML   GNTA Y+ YAYTRI SI   AG++  D
Sbjct: 431 YSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFARAGLDMAD 480



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/324 (39%), Positives = 183/324 (56%), Gaps = 22/324 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E+A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----MNPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +         ++        +   V+VD+SSPN+AKEMHVGHLRSTIIGD+
Sbjct: 82  FINIFLKNEWISRHANQANISRTLGVNTAQNDTVVVDYSSPNVAKEMHVGHLRSTIIGDS 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY+ +K  +
Sbjct: 142 VVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFYRAAKHAY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRDDTMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+ KGL   DDG  +++ +   ++   PM ++  K DGG+ Y T+D+AA
Sbjct: 261 YNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVH 558
              R     AD ++  TD  Q +H
Sbjct: 321 AAYRYHTLHADRVILFTDARQTLH 344



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 108/180 (60%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ +L+  E     +AVA G +KY+DLS NRN DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  KQKNPDLSAEEKRAVVEAVAIGAVKYSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   AG++  D+        + +  +KE ALA  LL+  +VL+LV +D   H LC+
Sbjct: 466  RIRSIFARAGLDMADI-----GGEIVIHEDKERALAVKLLQFEEVLLLVAKDGMPHLLCQ 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  D + K     T RL LA  TAK +K+   +L I+TV KM
Sbjct: 521  YLFELAGIFSSFYEACPILSSDDKTK-----TSRLRLAALTAKTLKQGLQLLGIKTVEKM 575



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----MNPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL   +         ++        +   V+VD+SSPN+A++      HL S I
Sbjct: 82  FINIFLKNEWISRHANQANISRTLGVNTAQNDTVVVDYSSPNVAKE--MHVGHLRSTI 137


>gi|416247668|ref|ZP_11635851.1| arginyl-tRNA synthetase [Moraxella catarrhalis BC8]
 gi|326569480|gb|EGE19540.1| arginyl-tRNA synthetase [Moraxella catarrhalis BC8]
          Length = 575

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 188/330 (56%), Gaps = 34/330 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E+A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQI------KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL   +  +        + + VN  Q  T      V+VD+SSPN+AKEMHVGHLRS
Sbjct: 82  FINIFLKNEWISKHANQANISRTLGVNAAQNDT------VVVDYSSPNVAKEMHVGHLRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K+  ++DL+AFY+
Sbjct: 136 TIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKNLDLSDLEAFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-- 474
            +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT   
Sbjct: 195 AAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRDD 254

Query: 475 -RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   +  +V  L+ KGL   DDG  +++ +   ++   PM ++  K DGG+ Y 
Sbjct: 255 TMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           T+D+AA   R     AD ++  TD  Q +H
Sbjct: 315 TTDIAAAAYRYHTLHADRVILFTDARQTLH 344



 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/350 (39%), Positives = 191/350 (54%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K+  ++DL+AFY
Sbjct: 135 STIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKNLDLSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RAAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DTMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++  TD  Q +H +      +KAG + P++  M+   FG++
Sbjct: 314 TTTDIAAAAYRYHTLHADRVILFTDARQTLHAQQAWLITRKAGFV-PDEFVMEHFTFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   ++ KN   +L+  E     +AVA G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEAIERATTLIEQKN--PDLSAEEKRAVVEAVAIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           Y+DLS NRN DYVF +D ML   GNTA Y+ YAYTRI SI   AG++  D
Sbjct: 431 YSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFARAGLDMAD 480



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ +L+  E     +AVA G +KY+DLS NRN DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  EQKNPDLSAEEKRAVVEAVAIGAVKYSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   AG++  D+        + +  +KE ALA  LL+  +VL+LV +D   H LC+
Sbjct: 466  RIRSIFARAGLDMADI-----GGEIVIHEDKERALAVKLLQFEEVLLLVAKDGMPHLLCQ 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  D + K     T RL LA  TAK +K+   +L I+TV KM
Sbjct: 521  YLFELAGIFSSFYEACPILSSDDKTK-----TSRLRLAALTAKTLKQGLQLLGIKTVEKM 575



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 27/124 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQM------KDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+FL   +  +        + + VN  Q  T      V+VD+SSPN+A++      HL
Sbjct: 82  FINIFLKNEWISKHANQANISRTLGVNAAQNDT------VVVDYSSPNVAKE--MHVGHL 133

Query: 161 PSQI 164
            S I
Sbjct: 134 RSTI 137


>gi|416217322|ref|ZP_11624271.1| arginyl-tRNA synthetase [Moraxella catarrhalis 7169]
 gi|326561173|gb|EGE11538.1| arginyl-tRNA synthetase [Moraxella catarrhalis 7169]
          Length = 575

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/350 (39%), Positives = 190/350 (54%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY
Sbjct: 135 STIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RAAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DTMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++  TD  Q +H +      +KAG + P++  M+   FG++
Sbjct: 314 TTTDIAAAAYRYHTLHADRVILFTDARQTLHAQQAWLITRKAGFV-PDEFVMEHFTFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   +K KN   +L+  E     +AVA G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEAIERATTLIKQKN--PDLSAEEKRAVVEAVAIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           Y+DLS NRN DYVF +D ML   GNTA Y+ YAYTRI SI   AG++  D
Sbjct: 431 YSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFARAGLDMAD 480



 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/324 (39%), Positives = 183/324 (56%), Gaps = 22/324 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E+A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +         ++        +   V+VD+SSPN+AKEMHVGHLRSTIIGD+
Sbjct: 82  FINIFLKNEWISRHANQANISRTLGVNTAQNDTVVVDYSSPNVAKEMHVGHLRSTIIGDS 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY+ +K  +
Sbjct: 142 VVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFYRAAKHAY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRDDTMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+ KGL   DDG  +++ +   ++   PM ++  K DGG+ Y T+D+AA
Sbjct: 261 YNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVH 558
              R     AD ++  TD  Q +H
Sbjct: 321 AAYRYHTLHADRVILFTDARQTLH 344



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 108/180 (60%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ +L+  E     +AVA G +KY+DLS NRN DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  KQKNPDLSAEEKRAVVEAVAIGAVKYSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   AG++  D+        + +  +KE ALA  LL+  +VL+LV +D   H LC+
Sbjct: 466  RIRSIFARAGLDMADI-----GGEIVIHEDKERALAVKLLQFEEVLLLVAKDGMPHLLCQ 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  D + K     T RL LA  TAK +K+   +L I+TV KM
Sbjct: 521  YLFELAGIFSSFYEACPILSSDDKTK-----TSRLRLAALTAKTLKQGLQLLGIKTVEKM 575



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL   +         ++        +   V+VD+SSPN+A++      HL S I
Sbjct: 82  FINIFLKNEWISRHANQANISRTLGVNTAQNDTVVVDYSSPNVAKE--MHVGHLRSTI 137


>gi|416241240|ref|ZP_11632621.1| arginyl-tRNA synthetase [Moraxella catarrhalis BC7]
 gi|326572757|gb|EGE22743.1| arginyl-tRNA synthetase [Moraxella catarrhalis BC7]
          Length = 575

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/324 (39%), Positives = 184/324 (56%), Gaps = 22/324 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E+A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----MNPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362
           F+N+FL   +  +      ++        +   V+VD+SSPN+AKEMHVGHLRSTIIGD+
Sbjct: 82  FINIFLKNEWISKHANQANISRTLGVNTAQNDTVVVDYSSPNVAKEMHVGHLRSTIIGDS 141

Query: 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422
           + R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY+ +K  +
Sbjct: 142 VVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFYRAAKHAY 200

Query: 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESF 479
           D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT     GES 
Sbjct: 201 DSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRDDTMGESL 260

Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAA 534
           Y   +  +V  L+ KGL   DDG  +++ +   ++   PM ++  K DGG+ Y T+D+AA
Sbjct: 261 YNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLYTTTDIAA 320

Query: 535 IRQRIEEEKADWIVYVTDLGQGVH 558
              R     AD ++  TD  Q +H
Sbjct: 321 AAYRYHTLHADRVILFTDARQTLH 344



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/350 (39%), Positives = 189/350 (54%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY
Sbjct: 135 STIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RAAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DTMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++  TD  Q +H +      +KAG + P++  M+   FG++
Sbjct: 314 TTTDIAAAAYRYHTLHADRVILFTDARQTLHAQQAWLITRKAGFV-PDEFVMEHFTFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   ++ KN   +L+  E     +AVA G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEAIERATTLIEQKN--PDLSAEEKRAVVEAVAIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           Y+DLS NRN DY F +D ML   GNTA Y+ YAYTRI SI   AG++  D
Sbjct: 431 YSDLSKNRNTDYAFDWDNMLSFEGNTAPYMQYAYTRIRSIFVRAGLDMAD 480



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 107/180 (59%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ +L+  E     +AVA G +KY+DLS NRN DY F +D ML   GNTA Y+ YAYT
Sbjct: 406  EQKNPDLSAEEKRAVVEAVAIGAVKYSDLSKNRNTDYAFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   AG++  D+        + +  +KE ALA  LL+  +VL+LV +D   H LC+
Sbjct: 466  RIRSIFVRAGLDMADI-----GGEIVIHEDKERALAVKLLQFEEVLLLVAKDGMPHLLCQ 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  D + K     T RL LA  TAK +K+   +L I+TV KM
Sbjct: 521  YLFELAGIFSSFYEACPILSSDDKTK-----TSRLRLAALTAKTLKQGLQLLGIKTVEKM 575



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----MNPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
           F+N+FL   +  +      ++        +   V+VD+SSPN+A++      HL S I
Sbjct: 82  FINIFLKNEWISKHANQANISRTLGVNTAQNDTVVVDYSSPNVAKE--MHVGHLRSTI 137


>gi|296112948|ref|YP_003626886.1| arginyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295920642|gb|ADG60993.1| arginyl-tRNA synthetase [Moraxella catarrhalis BBH18]
          Length = 575

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 187/330 (56%), Gaps = 34/330 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E+A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDNIAEKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQI------KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL   +  +        + + VN  Q  T      V+VD+SSPN+AKEMHVGHLRS
Sbjct: 82  FINIFLKNEWISKHANQANISRTLGVNAAQNDT------VVVDYSSPNVAKEMHVGHLRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY+
Sbjct: 136 TIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-- 474
            +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT   
Sbjct: 195 AAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRDD 254

Query: 475 -RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   +  +V  L+ KGL   DDG  +++ +   ++   PM ++  K DGG+ Y 
Sbjct: 255 TMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           T+D+AA   R     AD ++  TD  Q +H
Sbjct: 315 TTDIAAAAYRYHTLHADRVILFTDARQTLH 344



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/350 (39%), Positives = 190/350 (54%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY
Sbjct: 135 STIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RAAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DTMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++  TD  Q +H +      +KAG + P++  M+   FG++
Sbjct: 314 TTTDIAAAAYRYHTLHADRVILFTDARQTLHAQQAWLITRKAGFV-PDEFVMEHFTFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   ++ KN   +L+  E     +AVA G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEAIERATTLIEQKN--PDLSAEEKRAVVEAVAIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           Y+DLS NRN DYVF +D ML   GNTA Y+ YAYTRI SI   AG++  D
Sbjct: 431 YSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFARAGLDMAD 480



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ +L+  E     +AVA G +KY+DLS NRN DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  EQKNPDLSAEEKRAVVEAVAIGAVKYSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   AG++  D+        + +  +KE ALA  LL+  +VL+LV +D   H LC+
Sbjct: 466  RIRSIFARAGLDMADI-----GGEIVIHEDKERALAVKLLQFEEVLLLVAKDGMPHLLCQ 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  D + K     T RL LA  TAK +K+   +L I+TV KM
Sbjct: 521  YLFELAGIFSSFYEACPILSSDDKTK-----TSRLRLAALTAKTLKQGLQLLGIKTVEKM 575



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 27/124 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDNIAEKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQM------KDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+FL   +  +        + + VN  Q  T      V+VD+SSPN+A++      HL
Sbjct: 82  FINIFLKNEWISKHANQANISRTLGVNAAQNDT------VVVDYSSPNVAKE--MHVGHL 133

Query: 161 PSQI 164
            S I
Sbjct: 134 RSTI 137


>gi|254786912|ref|YP_003074341.1| arginyl-tRNA synthetase [Teredinibacter turnerae T7901]
 gi|259511658|sp|C5BNG6.1|SYR_TERTT RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|237687266|gb|ACR14530.1| arginine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 578

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/366 (38%), Positives = 204/366 (55%), Gaps = 28/366 (7%)

Query: 205 MSVRDYLSDVFTHAVQ-VAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++R +L+D    A+  V  P   D +  +A + +     FGD+Q N AMA  K      
Sbjct: 1   MNIRKFLADRVRSAMSDVGIP--NDYSPHLAISKKP---GFGDYQANGAMAAAKA----- 50

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
            K NP ++AQSI   +         L+ V +K+E+A PGF+N+ L   +   Q+ +    
Sbjct: 51  MKTNPRELAQSIVDSL--------DLSGVAEKVEIAGPGFINIHLENAWLARQLAESSST 102

Query: 324 G-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
             +   T  +   V+VD+SSPN+AKEMHVGHLRSTIIGD ++R+LE+ G  V+R NHVGD
Sbjct: 103 ANLAAQTEQEAQTVVVDYSSPNLAKEMHVGHLRSTIIGDCLARILEFNGDKVIRQNHVGD 162

Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
           WGTQFGMLIA L+ +  D       + DL++FY+++K  FD D  F  +A   VV LQ  
Sbjct: 163 WGTQFGMLIAELETQLSDGDKPDFALKDLESFYQKAKAHFDTDAAFATKARDYVVRLQSG 222

Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLEL 499
           D      WE    VS +  ++IY  LNVTL     RGES Y   +  +V  L+ +GL   
Sbjct: 223 DQHILNLWESFKRVSLKHSEEIYSLLNVTLGPQDVRGESAYNDDLAAVVSELKAQGLAVE 282

Query: 500 DDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLG 554
           DDG ++++ ++         P+ + K DGG+ Y T+DLAA+R R  E  AD I+Y  D  
Sbjct: 283 DDGAQVVFLQELADKNGDPSPVIVQKKDGGYLYSTTDLAALRYRTGELAADRILYFIDAR 342

Query: 555 QGVHFR 560
           Q +H +
Sbjct: 343 QSLHMQ 348



 Score =  201 bits (512), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/388 (35%), Positives = 196/388 (50%), Gaps = 57/388 (14%)

Query: 528 DTSDLAAIRQRIEEEKADWIVYVT--DLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVR 585
           ++S  A +  + E+E    +V  +  +L + +H   L  STIIGD ++R+LE+ G  V+R
Sbjct: 98  ESSSTANLAAQTEQEAQTVVVDYSSPNLAKEMHVGHLR-STIIGDCLARILEFNGDKVIR 156

Query: 586 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 645
            NHVGDWGTQFGMLIA L+ +  D       + DL++FY+++K  FD D  F  +A   V
Sbjct: 157 QNHVGDWGTQFGMLIAELETQLSDGDKPDFALKDLESFYQKAKAHFDTDAAFATKARDYV 216

Query: 646 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEK 702
           V LQ  D      WE    VS +  ++IY  LNVTL     RGES Y   +  +V  L+ 
Sbjct: 217 VRLQSGDQHILNLWESFKRVSLKHSEEIYSLLNVTLGPQDVRGESAYNDDLAAVVSELKA 276

Query: 703 KG------------------------NLSLTKKLG-----------------------IV 715
           +G                         + + KK G                       I+
Sbjct: 277 QGLAVEDDGAQVVFLQELADKNGDPSPVIVQKKDGGYLYSTTDLAALRYRTGELAADRIL 336

Query: 716 YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSEL 775
           Y  D  Q +H + +   A+KA  +N     ++   FG ++G D K FKTRSG TVKL+EL
Sbjct: 337 YFIDARQSLHMQQVFTVARKANFVN-EWVSLEHHPFGTMMGADGKPFKTRSGGTVKLAEL 395

Query: 776 LDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLD 835
           L+E + R+   +     ++EL   E ++  + V  G IKYADLS  R  DYVF++D ML 
Sbjct: 396 LEEAVERASQVVA---ANSELDAQEAADIARKVGIGAIKYADLSKTRTNDYVFNWDAMLS 452

Query: 836 DRGNTAVYLLYAYTRIASIARTAGINSE 863
             GNT  YL YAYTRI SI R A ++ E
Sbjct: 453 FEGNTGPYLQYAYTRIKSIFRKADLDLE 480



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 97/177 (54%), Gaps = 8/177 (4%)

Query: 943  HTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIA 1002
            ++EL   E ++  + V  G IKYADLS  R  DYVF++D ML   GNT  YL YAYTRI 
Sbjct: 410  NSELDAQEAADIARKVGIGAIKYADLSKTRTNDYVFNWDAMLSFEGNTGPYLQYAYTRIK 469

Query: 1003 SIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLY 1062
            SI R A     DL + + +  +++   +E ALA   L+  +V+  V  +   H LC YLY
Sbjct: 470  SIFRKA-----DLDLESFAADLNIYEAQEKALALKTLQFAEVVEQVASEALPHVLCNYLY 524

Query: 1063 DISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            D+S+ F  FY+ C  ++ D     +     RL+L+ + AK +    D+L I  + +M
Sbjct: 525  DLSSLFMTFYEACPILKSDVP---EDTRNSRLVLSASVAKTLALGLDLLGIEVMERM 578



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 20/146 (13%)

Query: 9   MSVRDYLSDVFTHAVQ-VAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++R +L+D    A+  V  P   D +  +A + +     FGD+Q N AMA  K      
Sbjct: 1   MNIRKFLADRVRSAMSDVGIP--NDYSPHLAISKKP---GFGDYQANGAMAAAKA----- 50

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN 127
            K NP ++AQSI   +         L+ V +K+E A PGF+N+ L   +   Q+ +    
Sbjct: 51  MKTNPRELAQSIVDSL--------DLSGVAEKVEIAGPGFINIHLENAWLARQLAESSST 102

Query: 128 G-VQPPTLNKKLRVLVDFSSPNIARK 152
             +   T  +   V+VD+SSPN+A++
Sbjct: 103 ANLAAQTEQEAQTVVVDYSSPNLAKE 128


>gi|421493637|ref|ZP_15940992.1| ARGS [Morganella morganii subsp. morganii KT]
 gi|400192014|gb|EJO25155.1| ARGS [Morganella morganii subsp. morganii KT]
          Length = 532

 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 196/354 (55%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R  EYLGH V+R NHVGDWGTQFGMLIA+L+ K  +       +ADL+AFY
Sbjct: 91  STIIGDAAARTQEYLGHKVIRCNHVGDWGTQFGMLIAYLE-KMQNEDAGDMALADLEAFY 149

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+KK +DEDE+F +RA   VV LQ  D   +  W  + D++ +  Q+ Y+RLNVTLTE 
Sbjct: 150 REAKKHYDEDEVFAERARGYVVKLQGGDEYCRTMWRKLVDITMQQNQETYNRLNVTLTED 209

Query: 684 --RGESFYQKHMEQLVP-----------------YLEKKGN-------LSLTKKLG---- 713
              GES Y   +  +V                  YL++  N       + + KK G    
Sbjct: 210 DVMGESLYNDMLPGIVSDLLNRRIAEESEGAIVVYLDEFKNKEGEPMGVIIRKKDGGYLY 269

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 270 TTTDIACAKYRHDVLHADRVLYYIDSRQHQHLMQAWTIVRKAGYI-PESMTLEHHMFGMM 328

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G T++LS+LLDE + R+   +++KN  +++   EL +  + V  G +K
Sbjct: 329 LGKDGKPFKTRAGGTIRLSDLLDEAVERAEKLIREKN--SDMPEDELKQLAEVVGIGAVK 386

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+AS+ + A I+++   +P
Sbjct: 387 YADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYTRVASVFKRADIDADSLTQP 440



 Score =  215 bits (548), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 127/324 (39%), Positives = 188/324 (58%), Gaps = 28/324 (8%)

Query: 289 LAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKE 348
           L  + +K E+A PGF+N+FLS  +   Q++  + +     T  + + + +D+S+PN+AK+
Sbjct: 24  LDGIAEKTEIAGPGFINIFLSPDWLTTQLETALADDKLGLTPVEPMTIAIDYSAPNVAKQ 83

Query: 349 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 408
           MHVGHLRSTIIGD  +R  EYLGH V+R NHVGDWGTQFGMLIA+L+ K  +       +
Sbjct: 84  MHVGHLRSTIIGDAAARTQEYLGHKVIRCNHVGDWGTQFGMLIAYLE-KMQNEDAGDMAL 142

Query: 409 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 468
           ADL+AFY+E+KK +DEDE+F +RA   VV LQ  D   +  W  + D++ +  Q+ Y+RL
Sbjct: 143 ADLEAFYREAKKHYDEDEVFAERARGYVVKLQGGDEYCRTMWRKLVDITMQQNQETYNRL 202

Query: 469 NVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMT 517
           NVTLTE    GES Y   +  +V  L  + + E  +G  +++        GE  G I   
Sbjct: 203 NVTLTEDDVMGESLYNDMLPGIVSDLLNRRIAEESEGAIVVYLDEFKNKEGEPMGVI--- 259

Query: 518 IVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLE 577
           I K DGG+ Y T+D+A  + R +   AD ++Y  D  Q  H  L++  TI+     R   
Sbjct: 260 IRKKDGGYLYTTTDIACAKYRHDVLHADRVLYYIDSRQ--HQHLMQAWTIV-----RKAG 312

Query: 578 YLGHDVVRLNHVGDWGTQFGMLIA 601
           Y+   +   +H+      FGM++ 
Sbjct: 313 YIPESMTLEHHM------FGMMLG 330



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 103/180 (57%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + +++++   EL +  + V  G +KYADLS +R  DY+F +D ML   GNTA Y+ YAYT
Sbjct: 362  REKNSDMPEDELKQLAEVVGIGAVKYADLSKSRTTDYIFDWDNMLAFEGNTAPYMQYAYT 421

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+AS+ + A I+++ L     + P+ L  + E  LA  LL+  + +  V R+   H +C 
Sbjct: 422  RVASVFKRADIDADSL-----TQPIILTDDHERQLAARLLQFEETITAVAREGLPHMMCS 476

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY++C  +  ++E     +   RL LA  T K +K   D L I TV KM
Sbjct: 477  YLYDLAGLFSGFYEHCPILAAESE----ELRQSRLKLALLTQKTLKAGLDTLGIGTVEKM 532



 Score = 42.0 bits (97), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 36/60 (60%)

Query: 93  LAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           L  + +K E A PGF+N+FLS  +   Q++  + +     T  + + + +D+S+PN+A++
Sbjct: 24  LDGIAEKTEIAGPGFINIFLSPDWLTTQLETALADDKLGLTPVEPMTIAIDYSAPNVAKQ 83


>gi|359436849|ref|ZP_09226928.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. BSi20311]
 gi|359446787|ref|ZP_09236430.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. BSi20439]
 gi|358028446|dbj|GAA63177.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. BSi20311]
 gi|358039360|dbj|GAA72679.1| arginyl-tRNA synthetase [Pseudoalteromonas sp. BSi20439]
          Length = 580

 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/357 (38%), Positives = 198/357 (55%), Gaps = 60/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD + R LE+ G  VVR NH+GDWGTQFGMLIAHL+DK    +   +  
Sbjct: 133 HLR----STIIGDAVVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDKINQGVDLDTVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y R
Sbjct: 189 LADLETFYRDAKKRFDDEEGFADKARNYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKR 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSL------------------------- 708
           LNVTLT      ES Y   +  ++  L+ K N+++                         
Sbjct: 249 LNVTLTPADIMAESAYNSELNDIISLLKDK-NIAVESQGAQVVFLDELANKDGEPSAFIV 307

Query: 709 --------------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                               + KLG   I+   D  Q +HF  +E  A+KAG+L  ++T 
Sbjct: 308 QKSGGGFLYATTDLAACDYRSNKLGAERILIFVDARQSLHFNQVELTARKAGLLR-DETS 366

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805
            +F  FG ++G D K FKTR+G TVKL++LL+E + R+  KL +  R ++L+  + SE  
Sbjct: 367 YEFCPFGTMMGADGKPFKTRTGGTVKLADLLEESITRAAAKLAE--RESDLSDEDRSEIA 424

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           + V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTR+ SI R +G+++
Sbjct: 425 RKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRVRSIFRKSGVDA 481



 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 202/372 (54%), Gaps = 33/372 (8%)

Query: 205 MSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++R  L +    A+  A  PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRTILVEKAIAAMTAAGLPE--DTNPAVTQSTRP---QFGDYQINGAMGAAKKMK--- 52

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
              NP ++AQ I   +         ++ + +K E+A PGF+N+ L   +  + ++    N
Sbjct: 53  --SNPRELAQKIIDQL--------DVSDIAEKTEIAGPGFINIHLKPEFLAQSVQ--AAN 100

Query: 324 GVQPPTLN---KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
                 +N   K  +V+VD+SSPN+AKEMHVGHLRSTIIGD + R LE+ G  VVR NH+
Sbjct: 101 NHAKLAVNEHAKPQKVVVDYSSPNLAKEMHVGHLRSTIIGDAVVRALEFRGDTVVRQNHM 160

Query: 381 GDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           GDWGTQFGMLIAHL+DK    +   +  +ADL+ FY+++KKRFD++E F  +A   VV L
Sbjct: 161 GDWGTQFGMLIAHLEDKINQGVDLDTVALADLETFYRDAKKRFDDEEGFADKARNYVVKL 220

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGL 496
           Q  D   +K W++    S +  +++Y RLNVTLT      ES Y   +  ++  L+ K +
Sbjct: 221 QGGDAHCEKLWKLFIATSVKHSEEVYKRLNVTLTPADIMAESAYNSELNDIISLLKDKNI 280

Query: 497 LELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT 551
                G ++++      +D       + KS GGF Y T+DLAA   R  +  A+ I+   
Sbjct: 281 AVESQGAQVVFLDELANKDGEPSAFIVQKSGGGFLYATTDLAACDYRSNKLGAERILIFV 340

Query: 552 DLGQGVHFRLLE 563
           D  Q +HF  +E
Sbjct: 341 DARQSLHFNQVE 352



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            + R+  KL +  R ++L+  + SE  + V  G +KYADLS +R  DY+F++D ML   G 
Sbjct: 401  ITRAAAKLAE--RESDLSDEDRSEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGA 458

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA YL YAYTR+ SI R +G+++  L+       VS+   +E  LA  LL++ +VL L+ 
Sbjct: 459  TAPYLQYAYTRVRSIFRKSGVDAASLK-----ANVSIIEPQEKTLALKLLQLEEVLDLMI 513

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             +   H LC YLY++++ +  FY+ C  ++   EG   +V   RL+L    A  ++   D
Sbjct: 514  NEATPHVLCGYLYELASLYMTFYEACPVLK---EGVEPSVRDSRLVLCNLVADTLRTGLD 570

Query: 1110 ILNIRTVHKM 1119
            +L I  + +M
Sbjct: 571  LLGIEVMEQM 580



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 30/151 (19%)

Query: 9   MSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++R  L +    A+  A  PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRTILVEKAIAAMTAAGLPE--DTNPAVTQSTRP---QFGDYQINGAMGAAKKMK--- 52

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNV-----FLSR-VYAGEQM 121
              NP ++AQ I   +         ++ + +K E A PGF+N+     FL++ V A    
Sbjct: 53  --SNPRELAQKIIDQL--------DVSDIAEKTEIAGPGFINIHLKPEFLAQSVQAANNH 102

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             + VN    P      +V+VD+SSPN+A++
Sbjct: 103 AKLAVNEHAKPQ-----KVVVDYSSPNLAKE 128


>gi|76155576|gb|AAX26868.2| SJCHGC06108 protein [Schistosoma japonicum]
          Length = 242

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 137/191 (71%)

Query: 929  GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
            GL R+ ++L +K R+ ELT  E   AQ+AVAYGCIKYADLSH+R +DYVFSFD+MLDD+G
Sbjct: 52   GLERAKNRLLEKERNKELTEAEFERAQKAVAYGCIKYADLSHSRTIDYVFSFDRMLDDKG 111

Query: 989  NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
            NTAVYLLYAYTRI SI R AG + + +     + P++ +H  EF LAK L R+ D+L+ +
Sbjct: 112  NTAVYLLYAYTRIRSIIRNAGYSDKSINEIIDTLPLNFDHPMEFTLAKALCRLPDILLKI 171

Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
              D  LH LC+YLYD+S  F+ FYD CYCIE++ E     ++  R+LL EATA+VMK  F
Sbjct: 172  QNDFLLHSLCDYLYDLSCVFTNFYDTCYCIERNQETGDVQINKERILLCEATARVMKCGF 231

Query: 1109 DILNIRTVHKM 1119
            DIL I TV KM
Sbjct: 232  DILGIETVEKM 242



 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/135 (63%), Positives = 106/135 (78%)

Query: 733 AKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNR 792
           A+  G   P+  R+  +GFGVVLGED+KKFKTRSGDTV+L +LL+EGL R+ ++L +K R
Sbjct: 6   AEMLGYYKPDVQRVQHIGFGVVLGEDKKKFKTRSGDTVRLVDLLNEGLERAKNRLLEKER 65

Query: 793 HTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIA 852
           + ELT  E   AQ+AVAYGCIKYADLSH+R +DYVFSFD+MLDD+GNTAVYLLYAYTRI 
Sbjct: 66  NKELTEAEFERAQKAVAYGCIKYADLSHSRTIDYVFSFDRMLDDKGNTAVYLLYAYTRIR 125

Query: 853 SIARTAGINSEDPPE 867
           SI R AG + +   E
Sbjct: 126 SIIRNAGYSDKSINE 140


>gi|87122857|ref|ZP_01078727.1| arginyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86161868|gb|EAQ63163.1| arginyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 577

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/327 (37%), Positives = 189/327 (57%), Gaps = 22/327 (6%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M + K  K      NP + AQ +  ++         L+ V DK+E+A PG
Sbjct: 35  QFGDYQANGMMGVAKKLK-----TNPREFAQKVLDLL--------DLSDVADKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           F+N+FL   +    +  +  +  +    + K   ++VD+SSPN+AKEMHVGHLRST+IGD
Sbjct: 82  FINIFLKNDWMSGALASLRKSARLDIAQVEKAQTIVVDYSSPNLAKEMHVGHLRSTVIGD 141

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            + R LE+LGH+VVR NHVGDWGTQFGML+A+++    +    S  ++DL+ FY+ +K  
Sbjct: 142 AVVRTLEFLGHNVVRQNHVGDWGTQFGMLLAYMERLRQENTEISMALSDLETFYRAAKTC 201

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ES 478
           FD+DE F  RA + VV+LQ  D +    W+   ++S    +  Y  L V+LT      ES
Sbjct: 202 FDDDEAFAARARELVVSLQSGDEECLALWQEFINISLEHCEATYKTLGVSLTRENVMPES 261

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSI-PMTIVKSDGGFTYDTSDLA 533
            Y   +  +V  L+++ LL+  +G + ++ E+     G I P+ + K+ GGF Y T+DLA
Sbjct: 262 AYNDDLHNVVAALKEQDLLQESNGAQCVFMEEFANKEGEITPVIVQKTGGGFLYATTDLA 321

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFR 560
           A+R R +    D  +Y  D  Q +HF+
Sbjct: 322 ALRYRQDVLNFDRGLYFVDARQSLHFQ 348



 Score =  211 bits (537), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 141/391 (36%), Positives = 204/391 (52%), Gaps = 58/391 (14%)

Query: 542 EKADWIV--YVT-DLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 598
           EKA  IV  Y + +L + +H   L  ST+IGD + R LE+LGH+VVR NHVGDWGTQFGM
Sbjct: 111 EKAQTIVVDYSSPNLAKEMHVGHLR-STVIGDAVVRTLEFLGHNVVRQNHVGDWGTQFGM 169

Query: 599 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA 658
           L+A+++    +    S  ++DL+ FY+ +K  FD+DE F  RA + VV+LQ  D +    
Sbjct: 170 LLAYMERLRQENTEISMALSDLETFYRAAKTCFDDDEAFAARARELVVSLQSGDEECLAL 229

Query: 659 WEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVPYLE-------------- 701
           W+   ++S    +  Y  L V+LT      ES Y   +  +V  L+              
Sbjct: 230 WQEFINISLEHCEATYKTLGVSLTRENVMPESAYNDDLHNVVAALKEQDLLQESNGAQCV 289

Query: 702 -------KKGNLS--LTKKLGI------------------------VYVTDLGQGVHFRL 728
                  K+G ++  + +K G                         +Y  D  Q +HF+ 
Sbjct: 290 FMEEFANKEGEITPVIVQKTGGGFLYATTDLAALRYRQDVLNFDRGLYFVDARQSLHFQQ 349

Query: 729 LEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLK 788
           +    +KAG + P +T ++ + FG V+G D K FKTRSG   KLS+LL E   R+   + 
Sbjct: 350 IYTLGRKAGFVKP-ETSLEHMPFGTVMGTDGKPFKTRSGTVAKLSDLLAEAQDRAYQLVA 408

Query: 789 DKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAY 848
           +KN   E+   EL    + V    +KYADLS NR  DYVF++D ML   GNTA YLLYAY
Sbjct: 409 EKN--PEMEEDELRNIGRVVGIASVKYADLSKNRTSDYVFNWDTMLSFEGNTAPYLLYAY 466

Query: 849 TRIASIARTAGINSEDPPEPDPSQSEVEDRC 879
           +R+ASI R + I+  +    D S +E ++R 
Sbjct: 467 SRVASIVRRSEIDVANLT-GDISLAESQERA 496



 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 102/178 (57%), Gaps = 10/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ E+   EL    + V    +KYADLS NR  DYVF++D ML   GNTA YLLYAY+R+
Sbjct: 410  KNPEMEEDELRNIGRVVGIASVKYADLSKNRTSDYVFNWDTMLSFEGNTAPYLLYAYSRV 469

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            ASI R + I+     VA  +  +SL   +E ALA  L++  + +  V  D   H+LC YL
Sbjct: 470  ASIVRRSEID-----VANLTGDISLAESQERALAVKLMQFEEAVQQVANDGMPHNLCAYL 524

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            Y+++  F  FY+ C  +  +AE ++K     RL LA  TA  +K+   +L I T+ +M
Sbjct: 525  YELAGTFMTFYEACPIL--NAEDELK---NSRLQLALNTASTLKQGLSLLGIETLERM 577



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 14/107 (13%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M + K  K      NP + AQ +  ++         L+ V DK+E A PG
Sbjct: 35  QFGDYQANGMMGVAKKLK-----TNPREFAQKVLDLL--------DLSDVADKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +    +  +  +  +    + K   ++VD+SSPN+A++
Sbjct: 82  FINIFLKNDWMSGALASLRKSARLDIAQVEKAQTIVVDYSSPNLAKE 128


>gi|416230118|ref|ZP_11628241.1| arginyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
 gi|326561584|gb|EGE11925.1| arginyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
          Length = 567

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 187/330 (56%), Gaps = 34/330 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E+A PG
Sbjct: 27  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDDIAEKLEIAGPG 73

Query: 303 FVNVFLSRVYAGEQI------KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL   +  +        + + VN  Q  T      V+VD+SSPN+AKEMHVGHLRS
Sbjct: 74  FINIFLKNEWISKHANQANISRTLGVNAAQNDT------VVVDYSSPNVAKEMHVGHLRS 127

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY+
Sbjct: 128 TIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFYR 186

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-- 474
            +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT   
Sbjct: 187 AAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRDD 246

Query: 475 -RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   +  +V  L+ KGL   DDG  +++ +   ++   PM ++  K DGG+ Y 
Sbjct: 247 TMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLYT 306

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           T+D+AA   R     AD ++  TD  Q +H
Sbjct: 307 TTDIAAAAYRYHTLHADRVILFTDARQTLH 336



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/350 (39%), Positives = 190/350 (54%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY
Sbjct: 127 STIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFY 185

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT  
Sbjct: 186 RAAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRD 245

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 246 DTMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLY 305

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++  TD  Q +H +      +KAG + P++  M+   FG++
Sbjct: 306 TTTDIAAAAYRYHTLHADRVILFTDARQTLHAQQAWLITRKAGFV-PDEFVMEHFTFGMM 364

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   ++ KN   +L+  E     +AVA G +K
Sbjct: 365 LGKDGKPFKTRTGGTVKLADLLDEAIERATTLIEQKN--PDLSAEEKRAVVEAVAIGAVK 422

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           Y+DLS NRN DYVF +D ML   GNTA Y+ YAYTRI SI   AG++  D
Sbjct: 423 YSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFARAGLDMAD 472



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ +L+  E     +AVA G +KY+DLS NRN DYVF +D ML   GNTA Y+ YAYT
Sbjct: 398  EQKNPDLSAEEKRAVVEAVAIGAVKYSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYT 457

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   AG++  D+        + +  +KE ALA  LL+  +VL+LV +D   H LC+
Sbjct: 458  RIRSIFARAGLDMADI-----GGEIVIHEDKERALAVKLLQFEEVLLLVAKDGMPHLLCQ 512

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  D + K     T RL LA  TAK +K+   +L I+TV KM
Sbjct: 513  YLFELAGIFSSFYEACPILSSDDKTK-----TSRLRLAALTAKTLKQGLQLLGIKTVEKM 567



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 27/124 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E A PG
Sbjct: 27  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDDIAEKLEIAGPG 73

Query: 107 FVNVFLSRVYAGEQM------KDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+FL   +  +        + + VN  Q  T      V+VD+SSPN+A++      HL
Sbjct: 74  FINIFLKNEWISKHANQANISRTLGVNAAQNDT------VVVDYSSPNVAKE--MHVGHL 125

Query: 161 PSQI 164
            S I
Sbjct: 126 RSTI 129


>gi|440231188|ref|YP_007344981.1| arginyl-tRNA synthetase [Serratia marcescens FGI94]
 gi|440052893|gb|AGB82796.1| arginyl-tRNA synthetase [Serratia marcescens FGI94]
          Length = 576

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/411 (34%), Positives = 216/411 (52%), Gaps = 51/411 (12%)

Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII--- 321
              P  +A+ + +++         L  +  K+E+A PGFVN+FL   +  +Q   ++   
Sbjct: 53  -MPPRQLAEKVVALL--------QLDGIASKVEIAGPGFVNIFLDAAWVAQQADAVLRAP 103

Query: 322 ---VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
              +  V P T      +++D+S+PN+AKEMHVGH+RSTIIGD  +R   +LGH V+R N
Sbjct: 104 KLGIAPVAPQT------IVIDYSAPNVAKEMHVGHVRSTIIGDAAARTQSFLGHKVIRAN 157

Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
           HVGDWGTQFGMLIA+L+ K  +       ++DL+ FY+E+K+ +DED  F +RA   VV 
Sbjct: 158 HVGDWGTQFGMLIAYLE-KVQNEHADEMELSDLEQFYREAKRHYDEDAEFAERARAYVVK 216

Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKG 495
           LQ  D    K W  + D++    QK Y RLNVTLTE    GES Y   +  +V  L+ KG
Sbjct: 217 LQGGDDYCLKMWRKLVDITMAQNQKTYQRLNVTLTEDDVMGESLYNAMLPGIVADLKAKG 276

Query: 496 LLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
           L    +G  +++      +D   + + I K DGG+ Y T+D+A  + R E   AD ++Y 
Sbjct: 277 LAVESEGATVVFLDEYKNKDGDPMGVIIQKKDGGYLYTTTDIACAKYRYETLGADRVLYY 336

Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 601
            D  Q  H  L++  TI+     R   Y+   V   +H+      FGM++ 
Sbjct: 337 IDSRQ--HQHLMQAWTIV-----RKAGYVPESVSLEHHM------FGMMLG 374



 Score =  222 bits (565), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 186/354 (52%), Gaps = 54/354 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R   +LGH V+R NHVGDWGTQFGMLIA+L+ K  +       ++DL+ FY
Sbjct: 135 STIIGDAAARTQSFLGHKVIRANHVGDWGTQFGMLIAYLE-KVQNEHADEMELSDLEQFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           +E+K+ +DED  F +RA   VV LQ  D    K W  + D++    QK Y RLNVTLTE 
Sbjct: 194 REAKRHYDEDAEFAERARAYVVKLQGGDDYCLKMWRKLVDITMAQNQKTYQRLNVTLTED 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DVMGESLYNAMLPGIVADLKAKGLAVESEGATVVFLDEYKNKDGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 314 TTTDIACAKYRYETLGADRVLYYIDSRQHQHLMQAWTIVRKAGYV-PESVSLEHHMFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTRSG T+KLS+LLDE + R+   + +KN   ++   EL +   AV  G IK
Sbjct: 373 LGKDGKPFKTRSGGTIKLSDLLDEAIERAGKLIAEKN--PDMPADELQKVVNAVGIGAIK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
           YADLS +R  DY+F +D ML   GNTA Y+ YAYTR+AS+ + AG++  D   P
Sbjct: 431 YADLSKSRTTDYIFDWDNMLSFEGNTAPYMQYAYTRVASVFKRAGVDESDLTLP 484



 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 9/178 (5%)

Query: 942  RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
            ++ ++   EL +   AV  G IKYADLS +R  DY+F +D ML   GNTA Y+ YAYTR+
Sbjct: 408  KNPDMPADELQKVVNAVGIGAIKYADLSKSRTTDYIFDWDNMLSFEGNTAPYMQYAYTRV 467

Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
            AS+ + AG++  DL     + P+++  E+E ALA  LL+  + + +V R+   H +C YL
Sbjct: 468  ASVFKRAGVDESDL-----TLPLAMTEEREIALATRLLQFEETITVVAREGTPHVMCSYL 522

Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YD++  FS FY++C  +  D+E         RL LA  TAK +K   D L I TV +M
Sbjct: 523  YDLAGLFSGFYEHCQILNADSE----EARQSRLKLALLTAKTLKTGLDTLGIETVERM 576



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 29/150 (19%)

Query: 9   MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           M+++  LSD  + A+  A    G      A   +    +FGD+Q N  M++ K       
Sbjct: 1   MNIQALLSDKVSQALIAA----GAPADCEAQVRQSAKAQFGDYQANGVMSVAKKLG---- 52

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII--- 125
              P  +A+ + +++         L  +  K+E A PGFVN+FL   +  +Q   ++   
Sbjct: 53  -MPPRQLAEKVVALL--------QLDGIASKVEIAGPGFVNIFLDAAWVAQQADAVLRAP 103

Query: 126 ---VNGVQPPTLNKKLRVLVDFSSPNIARK 152
              +  V P T      +++D+S+PN+A++
Sbjct: 104 KLGIAPVAPQT------IVIDYSAPNVAKE 127


>gi|416155535|ref|ZP_11603947.1| arginyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
 gi|416254535|ref|ZP_11638801.1| arginyl-tRNA synthetase [Moraxella catarrhalis O35E]
 gi|326577009|gb|EGE26904.1| arginyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
 gi|326577465|gb|EGE27349.1| arginyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 575

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 187/330 (56%), Gaps = 34/330 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E+A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQI------KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL   +  +        + + VN  Q  T      V+VD+SSPN+AKEMHVGHLRS
Sbjct: 82  FINIFLKNEWISKHANQANISRTLGVNAAQNDT------VVVDYSSPNVAKEMHVGHLRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY+
Sbjct: 136 TIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-- 474
            +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT   
Sbjct: 195 AAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRDD 254

Query: 475 -RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   +  +V  L+ KGL   DDG  +++ +   ++   PM ++  K DGG+ Y 
Sbjct: 255 TMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           T+D+AA   R     AD ++  TD  Q +H
Sbjct: 315 TTDIAAAAYRYHTLHADRVILFTDARQTLH 344



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/350 (39%), Positives = 190/350 (54%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY
Sbjct: 135 STIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RAAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DTMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++  TD  Q +H +      +KAG + P++  M+   FG++
Sbjct: 314 TTTDIAAAAYRYHTLHADRVILFTDARQTLHAQQAWLITRKAGFV-PDEFVMEHFTFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   ++ KN   +L+  E     +AVA G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEAIERATTLIEQKN--PDLSAEEKRAVVEAVAIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           Y+DLS NRN DYVF +D ML   GNTA Y+ YAYTRI SI   AG++  D
Sbjct: 431 YSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFVRAGLDMAD 480



 Score =  137 bits (344), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ +L+  E     +AVA G +KY+DLS NRN DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  EQKNPDLSAEEKRAVVEAVAIGAVKYSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   AG++  D+        + +  +KE ALA  LL+  +VL+LV +D   H LC+
Sbjct: 466  RIRSIFVRAGLDMADI-----GGEIVIHEDKERALAVKLLQFEEVLLLVAKDGMPHLLCQ 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  D + K     T RL LA  TAK +K+   +L I+TV KM
Sbjct: 521  YLFELAGIFSSFYEACPILSSDDKTK-----TSRLRLAALTAKTLKQGLQLLGIKTVEKM 575



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 27/124 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQM------KDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+FL   +  +        + + VN  Q  T      V+VD+SSPN+A++      HL
Sbjct: 82  FINIFLKNEWISKHANQANISRTLGVNAAQNDT------VVVDYSSPNVAKE--MHVGHL 133

Query: 161 PSQI 164
            S I
Sbjct: 134 RSTI 137


>gi|416223437|ref|ZP_11626415.1| arginyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|416232618|ref|ZP_11629013.1| arginyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
 gi|326562857|gb|EGE13145.1| arginyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|326567639|gb|EGE17747.1| arginyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 412

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 187/330 (56%), Gaps = 34/330 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E+A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQI------KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL   +  +        + + VN  Q  T      V+VD+SSPN+AKEMHVGHLRS
Sbjct: 82  FINIFLKNEWISKHANQANISRTLGVNAAQNDT------VVVDYSSPNVAKEMHVGHLRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY+
Sbjct: 136 TIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-- 474
            +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT   
Sbjct: 195 AAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRDD 254

Query: 475 -RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   +  +V  L+ KGL   DDG  +++ +   ++   PM ++  K DGG+ Y 
Sbjct: 255 TMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           T+D+AA   R     AD ++  TD  Q +H
Sbjct: 315 TTDIAAAAYRYHTLHADRVILFTDARQTLH 344



 Score =  157 bits (398), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/276 (36%), Positives = 143/276 (51%), Gaps = 52/276 (18%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY
Sbjct: 135 STIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RAAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DTMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++  TD  Q +H +      +KAG + P++  M+   FG++
Sbjct: 314 TTTDIAAAAYRYHTLHADRVILFTDARQTLHAQQAWLITRKAGFV-PDEFVMEHFTFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK 790
           LG+D K FKTR+G TVKL++LLDE + R+   ++ K
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEAIERATTLIEQK 408



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 27/124 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQM------KDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+FL   +  +        + + VN  Q  T      V+VD+SSPN+A++      HL
Sbjct: 82  FINIFLKNEWISKHANQANISRTLGVNAAQNDT------VVVDYSSPNVAKE--MHVGHL 133

Query: 161 PSQI 164
            S I
Sbjct: 134 RSTI 137


>gi|447919563|ref|YP_007400131.1| arginyl-tRNA ligase [Pseudomonas poae RE*1-1-14]
 gi|445203426|gb|AGE28635.1| arginyl-tRNA ligase [Pseudomonas poae RE*1-1-14]
          Length = 578

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 154/402 (38%), Positives = 217/402 (53%), Gaps = 39/402 (9%)

Query: 206 SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
           ++R  +    T  V +   PE       V +T +K     GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQALTQLVNEGVLPEGLSPAIQVENTRDK---THGDFASNIAMMLSK---PAGM 57

Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
           K  P D+A+ I       +A  P+ A V  K ++A PGF+N F +      ++   + + 
Sbjct: 58  K--PRDLAEKI-------IAALPADASVT-KADIAGPGFINFFQNTQALASRLDAALADA 107

Query: 325 -VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
            +         RV+VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG  V+R NHVGDW
Sbjct: 108 RIGARKAGDSQRVVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDTVIRQNHVGDW 167

Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
           GTQFGML+A+LQ+  P     S  +ADL+ FY+ +KKRFDE E F  RA   VV LQ  D
Sbjct: 168 GTQFGMLMAYLQEN-P---ITSNELADLENFYRAAKKRFDESEAFADRARGLVVKLQAGD 223

Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELD 500
            +    W    ++S    Q IY+ LNV LT     GES Y   +  +V  L+  GLL   
Sbjct: 224 AECLALWNRFREISLSHCQDIYELLNVKLTMADVMGESAYNDDLINVVNDLKAAGLLVES 283

Query: 501 DGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQ 555
           +G + ++ E     D   +P+ IVK+DGG+ Y T+DLAA+R R    KAD  +Y  D  Q
Sbjct: 284 NGAQCVFLEEFKTADGEPLPVIIVKADGGYLYATTDLAAVRYRSGVLKADRALYFVDQRQ 343

Query: 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
            +HF+ + E       ++R   ++ H  + + H+G +GT  G
Sbjct: 344 ALHFQQVFE-------VARRAGFVTHP-MHMEHMG-FGTMNG 376



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 137/345 (39%), Positives = 181/345 (52%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+LQ+  P     S  +ADL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDTVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSNELADLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE E F  RA   VV LQ  D +    W    ++S    Q IY+ LNV LT  
Sbjct: 196 RAAKKRFDESEAFADRARGLVVKLQAGDAECLALWNRFREISLSHCQDIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVP-----------------YLEK-----------------KGNLS 707
              GES Y   +  +V                  +LE+                  G L 
Sbjct: 256 DVMGESAYNDDLINVVNDLKAAGLLVESNGAQCVFLEEFKTADGEPLPVIIVKADGGYLY 315

Query: 708 LTKKLGIV-------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
            T  L  V             Y  D  Q +HF+ + E A++AG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRSGVLKADRALYFVDQRQALHFQQVFEVARRAGFVT-HPMHMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K+KN   EL   +L    + V  G +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAQERAYTLVKEKN--PELAEADLRNIARVVGIGAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F+ ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 91/167 (54%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   +L    + V  G +KYADLS +R  DY F+F+ ML+  GNTA YLLYAYT
Sbjct: 408  KEKNPELAEADLRNIARVVGIGAVKYADLSKHRTSDYSFNFELMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G +  +++       + L+  +E  LA  L +  +VL  V      H LC 
Sbjct: 468  RVAGVFRKLGKDFSEVQ-----GQIDLQAPQEHELAAKLAQFGEVLNSVGEKGTPHILCT 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLY+++  FS FY+NC  +  D E +  +    RL LA    + +K+
Sbjct: 523  YLYEVAGLFSSFYENCPILTADDEAQKHS----RLRLAALAGRTLKQ 565



 Score = 41.2 bits (95), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 18/145 (12%)

Query: 10  SVRDYLSDVFTHAV-QVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
           ++R  +    T  V +   PE       V +T +K     GDF  N AM L K     G 
Sbjct: 4   TIRQLIQQALTQLVNEGVLPEGLSPAIQVENTRDK---THGDFASNIAMMLSK---PAGM 57

Query: 69  KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
           K  P D+A+ I       +A  P+ A V  K + A PGF+N F +      ++   + + 
Sbjct: 58  K--PRDLAEKI-------IAALPADASVT-KADIAGPGFINFFQNTQALASRLDAALADA 107

Query: 129 -VQPPTLNKKLRVLVDFSSPNIARK 152
            +         RV+VD S+PN+A++
Sbjct: 108 RIGARKAGDSQRVVVDLSAPNLAKE 132


>gi|437648971|ref|ZP_20809478.1| arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648904 3-6]
 gi|435268919|gb|ELO47475.1| arginyl-tRNA synthetase, partial [Salmonella enterica subsp.
           enterica serovar Enteritidis str. 648904 3-6]
          Length = 322

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 123/305 (40%), Positives = 181/305 (59%), Gaps = 28/305 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E+A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+AKEMHVGHLRSTII
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +ADL+ FY+++K
Sbjct: 139 GDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMALADLEGFYRDAK 197

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           K +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRLNVTLT     G
Sbjct: 198 KHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMG 257

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSD 531
           ES Y   +  +V  L+ KGL    +G  +++ +   ++   PM ++  K DGG+ Y T+D
Sbjct: 258 ESLYNPMLPGIVADLKAKGLAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTD 317

Query: 532 LAAIR 536
           +A  +
Sbjct: 318 IACAK 322



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/150 (47%), Positives = 92/150 (61%), Gaps = 8/150 (5%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
           H R    STIIGD   R LE+LGH V+R NHVGDWGTQFGMLIA L+ +  +       +
Sbjct: 132 HLR----STIIGDAAVRTLEFLGHHVIRANHVGDWGTQFGMLIAWLEKQQQEN-AGDMAL 186

Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
           ADL+ FY+++KK +DEDE F +RA   VV LQ  D  +++ W  + D++    Q  YDRL
Sbjct: 187 ADLEGFYRDAKKHYDEDEAFAERARNYVVKLQSGDTYFREMWRKLVDITMTQNQITYDRL 246

Query: 678 NVTLTE---RGESFYQKHMEQLVPYLEKKG 704
           NVTLT     GES Y   +  +V  L+ KG
Sbjct: 247 NVTLTRDDVMGESLYNPMLPGIVADLKAKG 276



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  MA+ K          P  +A+ +         T+  L+ +  K+E A PG
Sbjct: 35  QFGDYQANGMMAVAKKLG-----MAPRQLAEQVL--------THLDLSGIASKVEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+FL   +  EQ++  + +   GV  PT   +  ++VD+S+PN+A++
Sbjct: 82  FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKE 127


>gi|422657451|ref|ZP_16719892.1| arginyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278]
 gi|331016037|gb|EGH96093.1| arginyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278]
          Length = 578

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 209/366 (57%), Gaps = 43/366 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P D+A+ + + + ++        + + K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAEKLIAALPAD--------EQVSKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKK-----LRVLVDFSSPNIAKEMHVGHLRSTII 359
           N F +      ++   + +    P L+ +      RV+VD S+PN+AKEMHVGHLRSTII
Sbjct: 88  NFFQNTAALASRLDAALAD----PQLSVRKAGAAQRVVVDLSAPNLAKEMHVGHLRSTII 143

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD ++ +LE+LG  V+R NHVGDWGTQFGML+A+LQ+K P     S  ++DL+ FY+ +K
Sbjct: 144 GDGVANVLEFLGDTVIRQNHVGDWGTQFGMLLAYLQEK-P---ATSDELSDLENFYRAAK 199

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           +RFDE E F +RA   VV LQ  D +    W    D+S    Q+ Y+RLNV LT     G
Sbjct: 200 QRFDESEEFAERARGLVVKLQAGDAECLTLWTRFKDISLSHCQQTYERLNVKLTPADVMG 259

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSD 531
           ES Y   +  +V  L+  GLL   +G + ++ E     D   +P+ + K+ GG+ Y T+D
Sbjct: 260 ESAYNDDLANVVNDLKAAGLLVESNGAQCVFLEEFRTADDTPLPVIVQKAGGGYLYATTD 319

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           LAAIR R +  KAD  +Y  D  Q +HF+ + E       ++R   ++ H+ ++L H+G 
Sbjct: 320 LAAIRYRSKVLKADRALYFVDQRQALHFQQVFE-------VARRAGFV-HEGMQLEHMG- 370

Query: 592 WGTQFG 597
           +GT  G
Sbjct: 371 FGTMNG 376



 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/345 (38%), Positives = 185/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++ +LE+LG  V+R NHVGDWGTQFGML+A+LQ+K P     S  ++DL+ FY
Sbjct: 140 STIIGDGVANVLEFLGDTVIRQNHVGDWGTQFGMLLAYLQEK-P---ATSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE E F +RA   VV LQ  D +    W    D+S    Q+ Y+RLNV LT  
Sbjct: 196 RAAKQRFDESEEFAERARGLVVKLQAGDAECLTLWTRFKDISLSHCQQTYERLNVKLTPA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
              GES Y   +  +V  L+  G L                        + +K G     
Sbjct: 256 DVMGESAYNDDLANVVNDLKAAGLLVESNGAQCVFLEEFRTADDTPLPVIVQKAGGGYLY 315

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q +HF+ + E A++AG ++    +++ +GFG +
Sbjct: 316 ATTDLAAIRYRSKVLKADRALYFVDQRQALHFQQVFEVARRAGFVHEG-MQLEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE   R+   +K+KN   ++   EL    +AV    +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLDEAQERAYTLVKEKN--PQVAEAELRSIARAVGISAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD+ML   GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRASDYSFNFDQMLSFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ ++   EL    +AV    +KYADLS +R  DY F+FD+ML   GNTA YLLYAYT
Sbjct: 408  KEKNPQVAEAELRSIARAVGISAVKYADLSKHRASDYSFNFDQMLSFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G   +     A    + LE  +E  LA  L + N+ L  V      H LC 
Sbjct: 468  RVAGVFRKLGTPFD-----ASKGHIVLEAPQEQELAARLAQFNETLNNVAEKGTPHVLCA 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+  D+L + T+ +M
Sbjct: 523  YLYDLAGLFSSFYENCPILGAENPDQQQS----RLRLAALTGRTLKQGLDLLGLETLERM 578


>gi|422590757|ref|ZP_16665409.1| arginyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str.
           M302280]
 gi|330877954|gb|EGH12103.1| arginyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str.
           M302280]
          Length = 578

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 209/366 (57%), Gaps = 43/366 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P D+A+ + + + ++        + + K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAEKLIAALPAD--------EQVSKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKK-----LRVLVDFSSPNIAKEMHVGHLRSTII 359
           N F +      ++   + +    P L+ +      RV+VD S+PN+AKEMHVGHLRSTII
Sbjct: 88  NFFQNTAALASRLDAALAD----PQLSVRKAGTAQRVVVDLSAPNLAKEMHVGHLRSTII 143

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD ++ +LE+LG  V+R NHVGDWGTQFGML+A+LQ+K P     S  ++DL+ FY+ +K
Sbjct: 144 GDGVANVLEFLGDTVIRQNHVGDWGTQFGMLLAYLQEK-P---ATSDELSDLENFYRAAK 199

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           +RFDE E F +RA   VV LQ  D +    W    D+S    Q+ Y+RLNV LT     G
Sbjct: 200 QRFDESEEFAERARGLVVKLQAGDAECLTLWTRFKDISLSHCQQTYERLNVKLTPADVMG 259

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSD 531
           ES Y   +  +V  L+  GLL   +G + ++ E     D   +P+ + K+ GG+ Y T+D
Sbjct: 260 ESAYNDDLANVVNDLKATGLLVESNGAQCVFLEEFRTADDTPLPVIVQKAGGGYLYATTD 319

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           LAAIR R +  KAD  +Y  D  Q +HF+ + E       ++R   ++ H+ ++L H+G 
Sbjct: 320 LAAIRYRSKVLKADRALYFVDQRQALHFQQVFE-------VARRAGFV-HEGMQLEHMG- 370

Query: 592 WGTQFG 597
           +GT  G
Sbjct: 371 FGTMNG 376



 Score =  215 bits (548), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 185/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++ +LE+LG  V+R NHVGDWGTQFGML+A+LQ+K P     S  ++DL+ FY
Sbjct: 140 STIIGDGVANVLEFLGDTVIRQNHVGDWGTQFGMLLAYLQEK-P---ATSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE E F +RA   VV LQ  D +    W    D+S    Q+ Y+RLNV LT  
Sbjct: 196 RAAKQRFDESEEFAERARGLVVKLQAGDAECLTLWTRFKDISLSHCQQTYERLNVKLTPA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
              GES Y   +  +V  L+  G L                        + +K G     
Sbjct: 256 DVMGESAYNDDLANVVNDLKATGLLVESNGAQCVFLEEFRTADDTPLPVIVQKAGGGYLY 315

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q +HF+ + E A++AG ++    +++ +GFG +
Sbjct: 316 ATTDLAAIRYRSKVLKADRALYFVDQRQALHFQQVFEVARRAGFVHEG-MQLEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE   R+   +K+KN   E+   EL    +AV    +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLDEAEERAYTLVKEKN--PEVAEAELRSIAKAVGISAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD+ML   GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRASDYSFNFDQMLSFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ E+   EL    +AV    +KYADLS +R  DY F+FD+ML   GNTA YLLYAYT
Sbjct: 408  KEKNPEVAEAELRSIAKAVGISAVKYADLSKHRASDYSFNFDQMLSFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G   +     A    + LE  +E  LA  L + N+ L  V      H LC 
Sbjct: 468  RVAGVFRKLGTPFD-----ASKGHIVLEAPQEQELAARLAQFNETLNNVAEKGTPHVLCA 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+  D+L + T+ +M
Sbjct: 523  YLYDLAGLFSSFYENCPILGAENPDQQQS----RLRLAALTGRTLKQGLDLLGLETLERM 578


>gi|257067855|ref|YP_003154110.1| arginyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256558673|gb|ACU84520.1| arginyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
          Length = 588

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/339 (38%), Positives = 184/339 (54%), Gaps = 32/339 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +F DFQCN AM L K    K     P DIA  I + V         LA + +  E+A PG
Sbjct: 35  QFADFQCNAAMGLAKRLGRK-----PRDIAAEIVAAV--------DLADIAETPEIAGPG 81

Query: 303 FVNVFLSRVYAGEQIKDIIV--NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIG 360
           F+N+ L   +   Q  ++      +  P   +   V++D+S+PN+AKEMHVGHLR+T++G
Sbjct: 82  FLNIRLRTDWVAAQAAELTAPSAALGVPAPERAQTVVLDYSAPNVAKEMHVGHLRTTVVG 141

Query: 361 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK 420
           D+I+R LE LGH VVR NH+GDWGT FGMLI HL +   D         D  AFY+ ++ 
Sbjct: 142 DSIARTLEKLGHTVVRQNHIGDWGTPFGMLIEHLLEVGEDSAEAELLKTDPNAFYQAARA 201

Query: 421 RFDEDEI---------FKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT 471
           +FD  E          F  RA   V  LQ  D +  + W  + ++S++ F +IYD L+VT
Sbjct: 202 KFDAAEAAGAADDGSDFASRARARVATLQSGDAESLRIWTNLVELSKQYFHRIYDMLDVT 261

Query: 472 LTER---GESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDG 523
           LT+    GES Y   +  +   LE  G+  + DG   ++     G D   +P+ I KSDG
Sbjct: 262 LTDEHLAGESTYNDQLAAVCDDLEAAGIARISDGALCVFPAGFTGRDEQPLPLIIRKSDG 321

Query: 524 GFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           G+ Y T+DLAA+R R+ +  AD I YV    Q +HF ++
Sbjct: 322 GYGYATTDLAALRHRVRDLGADRIGYVVGSAQELHFTMV 360



 Score =  163 bits (413), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 166/354 (46%), Gaps = 68/354 (19%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +T++GD+I+R LE LGH VVR NH+GDWGT FGMLI HL +   D         D  AFY
Sbjct: 137 TTVVGDSIARTLEKLGHTVVRQNHIGDWGTPFGMLIEHLLEVGEDSAEAELLKTDPNAFY 196

Query: 625 KESKKRFDEDEI---------FKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
           + ++ +FD  E          F  RA   V  LQ  D +  + W  + ++S++ F +IYD
Sbjct: 197 QAARAKFDAAEAAGAADDGSDFASRARARVATLQSGDAESLRIWTNLVELSKQYFHRIYD 256

Query: 676 RLNVTLTER---GESFYQKHM-------------------------------EQLVPYLE 701
            L+VTLT+    GES Y   +                               EQ +P + 
Sbjct: 257 MLDVTLTDEHLAGESTYNDQLAAVCDDLEAAGIARISDGALCVFPAGFTGRDEQPLPLII 316

Query: 702 KKGNLSL-------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
           +K +                 + LG   I YV    Q +HF ++   A++AG L P +  
Sbjct: 317 RKSDGGYGYATTDLAALRHRVRDLGADRIGYVVGSAQELHFTMVFTSAREAGWL-PEQVE 375

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKL---SELLDEGLRRSLDKLKDKNRHTELTPTELS 802
            + V  G VLGED K  +TRSG +++L    E      R  +D+L+      +L   E  
Sbjct: 376 AEHVKIGSVLGEDGKILRTRSGSSLRLMALLEEAVAAARTVIDELR-----PDLPEAERE 430

Query: 803 EAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
           +    +  G +KYADLS   + DY F  D+ML   GNTA YL YA  RI SI R
Sbjct: 431 QIAHDIGIGGVKYADLSTAHDSDYTFDLDRMLALTGNTAPYLQYAVARIRSIGR 484



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 93/180 (51%), Gaps = 15/180 (8%)

Query: 945  ELTPTELSEAQQA-----VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            EL P +L EA++      +  G +KYADLS   + DY F  D+ML   GNTA YL YA  
Sbjct: 419  ELRP-DLPEAEREQIAHDIGIGGVKYADLSTAHDSDYTFDLDRMLALTGNTAPYLQYAVA 477

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI R A         A       +E++ E ALA  LL     L+ V  +   H LC 
Sbjct: 478  RIRSIGRKAAAQGVAAAPAPH-----VENDAERALALQLLEFGPTLVSVGAEFEPHRLCA 532

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL+ ++ AF+ FY+    I K+A+ +++    GRL LAE T +V+ +  D L +    +M
Sbjct: 533  YLFSLAQAFTSFYE-ASPILKEADEQVR---AGRLALAELTERVLVEGLDALGVNAPQQM 588



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 15/108 (13%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +F DFQCN AM L K    K     P DIA  I + V         LA + +  E A PG
Sbjct: 35  QFADFQCNAAMGLAKRLGRK-----PRDIAAEIVAAV--------DLADIAETPEIAGPG 81

Query: 107 FVNVFLSRVYAGEQMKDIIV--NGVQPPTLNKKLRVLVDFSSPNIARK 152
           F+N+ L   +   Q  ++      +  P   +   V++D+S+PN+A++
Sbjct: 82  FLNIRLRTDWVAAQAAELTAPSAALGVPAPERAQTVVLDYSAPNVAKE 129


>gi|378948359|ref|YP_005205847.1| arginyl-tRNA synthetase [Pseudomonas fluorescens F113]
 gi|359758373|gb|AEV60452.1| Arginyl-tRNA synthetase [Pseudomonas fluorescens F113]
          Length = 578

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 154/408 (37%), Positives = 221/408 (54%), Gaps = 51/408 (12%)

Query: 204 RMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           R  ++  ++ + T  V    PE       V +T +K     GDF  N AM L K     G
Sbjct: 6   RQLIQQAIAQLVTEGV---LPEGLSPAIQVENTRDK---THGDFASNIAMMLAK---PAG 56

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF------LSRVYAGEQI 317
            K  P D+A+ I + + ++        + + K ++A PGF+N F       SR+ A    
Sbjct: 57  MK--PRDLAEKIIAALPAD--------ENVSKADIAGPGFINFFQNTQALASRLDAALAD 106

Query: 318 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
           + I V    P       R +VD S+PN+AKEMHVGHLRSTIIGD ++R+LE+LG  V+R 
Sbjct: 107 ERIGVRKAGPLQ-----RTVVDLSAPNLAKEMHVGHLRSTIIGDGVARVLEFLGDTVIRQ 161

Query: 378 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY+ +K+RFDE   F  RA   VV
Sbjct: 162 NHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFYRAAKQRFDESPEFADRARGLVV 217

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKK 494
            LQ  D +    W    D+S    QKIY+ LNV LT     GES Y   +  +V  L+ K
Sbjct: 218 KLQAGDAECLALWSKFKDISLSHCQKIYELLNVKLTMADVMGESAYNDDLINVVNDLKAK 277

Query: 495 GLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
           G+L   +G + ++       D   +P+ IVK+DGG+ Y T+DLAA+R R    KAD ++Y
Sbjct: 278 GMLVESNGAQCVFLDQFKTADGEPLPVIIVKADGGYLYATTDLAAVRYRNGVLKADRVLY 337

Query: 550 VTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
             D  Q +HF+ + E       ++RL  ++ H  + + H+G +GT  G
Sbjct: 338 FVDQRQALHFQQVFE-------VARLAGFVAHP-MEMEHMG-FGTMNG 376



 Score =  208 bits (530), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 179/345 (51%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+LQ+  P     S  ++DL+ FY
Sbjct: 140 STIIGDGVARVLEFLGDTVIRQNHVGDWGTQFGMLMAYLQEN-P---ITSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K+RFDE   F  RA   VV LQ  D +    W    D+S    QKIY+ LNV LT  
Sbjct: 196 RAAKQRFDESPEFADRARGLVVKLQAGDAECLALWSKFKDISLSHCQKIYELLNVKLTMA 255

Query: 684 --RGESFYQKHMEQLVPYLEKKGNL----------------------------------- 706
              GES Y   +  +V  L+ KG L                                   
Sbjct: 256 DVMGESAYNDDLINVVNDLKAKGMLVESNGAQCVFLDQFKTADGEPLPVIIVKADGGYLY 315

Query: 707 ------------SLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                        + K   ++Y  D  Q +HF+ + E A+ AG +  +   M+ +GFG +
Sbjct: 316 ATTDLAAVRYRNGVLKADRVLYFVDQRQALHFQQVFEVARLAGFV-AHPMEMEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LL E   R+   +K KN   EL   EL +  + V    +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLTEAQDRAYTLVKGKN--PELAEDELRKIAKVVGIDAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD ML+  GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 93/169 (55%), Gaps = 13/169 (7%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   EL +  + V    +KYADLS +R  DY F+FD ML+  GNTA YLLYAYT
Sbjct: 408  KGKNPELAEDELRKIAKVVGIDAVKYADLSKHRTSDYSFNFDLMLNFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAG--INSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHL 1057
            R+A + R  G   N  D ++  Q+      HE+E  LA  L +  +VL  V      H L
Sbjct: 468  RVAGVFRKLGKSFNEVDGQIVLQAP-----HEQE--LAAKLAQFGEVLNNVADKGTPHTL 520

Query: 1058 CEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            C YLYD++  FS FY+NC  +      ++++    RL LA  T + +K+
Sbjct: 521  CAYLYDVAGLFSSFYENCPILNAQTPEQMQS----RLRLAALTGRTLKQ 565


>gi|213969436|ref|ZP_03397573.1| arginyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301382647|ref|ZP_07231065.1| arginyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|302060631|ref|ZP_07252172.1| arginyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40]
 gi|302132698|ref|ZP_07258688.1| arginyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213925807|gb|EEB59365.1| arginyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
          Length = 578

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 209/366 (57%), Gaps = 43/366 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N AM L K    K     P D+A+ + + + ++        + + K+E+A PGF+
Sbjct: 41  GDFASNIAMMLAKPAGMK-----PRDLAEKLIAALPAD--------EQVSKVEIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKK-----LRVLVDFSSPNIAKEMHVGHLRSTII 359
           N F +      ++   + +    P L+ +      RV+VD S+PN+AKEMHVGHLRSTII
Sbjct: 88  NFFQNTAALASRLDAALAD----PQLSVRKAGAAQRVVVDLSAPNLAKEMHVGHLRSTII 143

Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
           GD ++ +LE+LG  V+R NHVGDWGTQFGML+A+LQ+K P     S  ++DL+ FY+ +K
Sbjct: 144 GDGVANVLEFLGDTVIRQNHVGDWGTQFGMLLAYLQEK-P---ATSDELSDLENFYRAAK 199

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           +RFDE E F +RA   VV LQ  D +    W    D+S    Q+ Y+RLNV LT     G
Sbjct: 200 QRFDESEEFAERARGLVVKLQAGDAECLTLWTRFKDISLSHCQQTYERLNVKLTPADVMG 259

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSD 531
           ES Y   +  +V  L+  GLL   +G + ++ E     D   +P+ + K+ GG+ Y T+D
Sbjct: 260 ESAYNDDLANVVNDLKAAGLLVESNGAQCVFLEEFRTADDTPLPVIVQKAGGGYLYATTD 319

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
           LAAIR R +  KAD  +Y  D  Q +HF+ + E       ++R   ++ H+ ++L H+G 
Sbjct: 320 LAAIRYRSKVLKADRALYFVDQRQALHFQQVFE-------VARRAGFV-HEGMQLEHMG- 370

Query: 592 WGTQFG 597
           +GT  G
Sbjct: 371 FGTMNG 376



 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/345 (38%), Positives = 185/345 (53%), Gaps = 57/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++ +LE+LG  V+R NHVGDWGTQFGML+A+LQ+K P     S  ++DL+ FY
Sbjct: 140 STIIGDGVANVLEFLGDTVIRQNHVGDWGTQFGMLLAYLQEK-P---ATSDELSDLENFY 195

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+RFDE E F +RA   VV LQ  D +    W    D+S    Q+ Y+RLNV LT  
Sbjct: 196 RAAKQRFDESEEFAERARGLVVKLQAGDAECLTLWTRFKDISLSHCQQTYERLNVKLTPA 255

Query: 685 ---GESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
              GES Y   +  +V  L+  G L                        + +K G     
Sbjct: 256 DVMGESAYNDDLANVVNDLKAAGLLVESNGAQCVFLEEFRTADDTPLPVIVQKAGGGYLY 315

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                               +Y  D  Q +HF+ + E A++AG ++    +++ +GFG +
Sbjct: 316 ATTDLAAIRYRSKVLKADRALYFVDQRQALHFQQVFEVARRAGFVHEG-MQLEHMGFGTM 374

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D + FKTR G TVKL +LLDE   R+   +K+KN   ++   EL    +AV    +K
Sbjct: 375 NGADGRPFKTRDGGTVKLIDLLDEAQERAYTLVKEKN--PQVAEAELRSIAKAVGISAVK 432

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+FD+ML   GNTA YLLYAYTR+A + R  G
Sbjct: 433 YADLSKHRASDYSFNFDQMLSFEGNTAPYLLYAYTRVAGVFRKLG 477



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 9/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ ++   EL    +AV    +KYADLS +R  DY F+FD+ML   GNTA YLLYAYT
Sbjct: 408  KEKNPQVAEAELRSIAKAVGISAVKYADLSKHRASDYSFNFDQMLSFEGNTAPYLLYAYT 467

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+A + R  G   +     A    + LE  +E  LA  L + N+ L  V      H LC 
Sbjct: 468  RVAGVFRKLGTPFD-----ASKGHIVLEAPQEQELAARLAQFNETLNNVAEKGTPHVLCA 522

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLYD++  FS FY+NC  +  +   + ++    RL LA  T + +K+  D+L + T+ +M
Sbjct: 523  YLYDLAGLFSSFYENCPILGAENPDQQQS----RLRLAALTGRTLKQGLDLLGLETLERM 578


>gi|429211495|ref|ZP_19202660.1| arginyl-tRNA synthetase [Pseudomonas sp. M1]
 gi|428155977|gb|EKX02525.1| arginyl-tRNA synthetase [Pseudomonas sp. M1]
          Length = 579

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 187/345 (54%), Gaps = 56/345 (16%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY
Sbjct: 140 STIIGDAVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AQAELHDLEVFY 196

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +KKRFDE   F  RA + VV LQ  D +  + W    ++S    QK+YD+L V LT  
Sbjct: 197 RAAKKRFDESPEFADRARELVVKLQAGDAECLRLWTRFNEISLSHCQKVYDQLGVKLTMA 256

Query: 684 --RGESFYQKHMEQLVPYLEKKGNLS-----------------------LTKKLG----- 713
             +GES Y   +  +V  L+ KG L+                       + +K G     
Sbjct: 257 DVKGESAYNDDLANVVDELKAKGLLTEDDGALCVFLDEFKNAEGNPLPVIVQKAGGGYLY 316

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++Y  D  Q +HF+ + E A++AG + P    ++ +GFG +
Sbjct: 317 ATTDLAAMRYRNKVLHCDRVLYFVDQRQALHFQQVFEVARRAGFV-PAGMDLEHMGFGTM 375

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
            G D K FKTR G TVKL +LLDE   R+   +K KN   EL   EL     AV  G +K
Sbjct: 376 NGADGKPFKTRDGGTVKLIDLLDEAEERAYTLVKAKN--PELGEDELRHIAHAVGIGAVK 433

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS +R  DY F+F++ML   GNTA YLLYAYTR+ASI R  G
Sbjct: 434 YADLSKHRTSDYSFNFEQMLSFEGNTAPYLLYAYTRVASIFRKLG 478



 Score =  220 bits (560), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 132/327 (40%), Positives = 186/327 (56%), Gaps = 29/327 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD+  N AM L K    K     P D+A  + +     L  NP +AKV    E+A PGF+
Sbjct: 41  GDYASNIAMMLAKPAGLK-----PRDLATQLVAA----LPANPQVAKV----EIAGPGFL 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F  + +    +   + +   GV+        RV VD SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQDQAWLAASLDAALHDDRLGVRKA--GPAQRVAVDLSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            ++R+LE+LG  V+R NHVGDWGTQFGML+A+L+++  D       + DL+ FY+ +KKR
Sbjct: 146 AVARVLEFLGDTVIRQNHVGDWGTQFGMLLAYLEEQPVD---AQAELHDLEVFYRAAKKR 202

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGES 478
           FDE   F  RA + VV LQ  D +  + W    ++S    QK+YD+L V LT    +GES
Sbjct: 203 FDESPEFADRARELVVKLQAGDAECLRLWTRFNEISLSHCQKVYDQLGVKLTMADVKGES 262

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLA 533
            Y   +  +V  L+ KGLL  DDG   ++       +   +P+ + K+ GG+ Y T+DLA
Sbjct: 263 AYNDDLANVVDELKAKGLLTEDDGALCVFLDEFKNAEGNPLPVIVQKAGGGYLYATTDLA 322

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFR 560
           A+R R +    D ++Y  D  Q +HF+
Sbjct: 323 AMRYRNKVLHCDRVLYFVDQRQALHFQ 349



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 90/167 (53%), Gaps = 9/167 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   EL     AV  G +KYADLS +R  DY F+F++ML   GNTA YLLYAYT
Sbjct: 409  KAKNPELGEDELRHIAHAVGIGAVKYADLSKHRTSDYSFNFEQMLSFEGNTAPYLLYAYT 468

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ASI R  G   +++        + LE  +E ALA  L +  D+L  V      H LC 
Sbjct: 469  RVASIFRKLGKGYDEV-----GGKIVLEAPQEQALAAQLAQFGDLLNNVALKGVPHILCA 523

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
            YLY+++  FS FY++C  +      +       RL LA  T + +K+
Sbjct: 524  YLYELAGLFSSFYEHCPIL----AAQTPEQQESRLKLAALTGRTLKQ 566



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 18/107 (16%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD+  N AM L K    K     P D+A  + +     L  NP +AKV    E A PGF+
Sbjct: 41  GDYASNIAMMLAKPAGLK-----PRDLATQLVAA----LPANPQVAKV----EIAGPGFL 87

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
           N F  + +    +   + +   GV+        RV VD SSPN+A++
Sbjct: 88  NFFQDQAWLAASLDAALHDDRLGVRKA--GPAQRVAVDLSSPNLAKE 132


>gi|416250692|ref|ZP_11637372.1| arginyl-tRNA synthetase [Moraxella catarrhalis CO72]
 gi|421779761|ref|ZP_16216253.1| arginyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|326574023|gb|EGE23972.1| arginyl-tRNA synthetase [Moraxella catarrhalis CO72]
 gi|407813471|gb|EKF84253.1| arginyl-tRNA synthetase [Moraxella catarrhalis RH4]
          Length = 575

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/330 (39%), Positives = 187/330 (56%), Gaps = 34/330 (10%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E+A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 303 FVNVFLSRVYAGEQI------KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
           F+N+FL   +  +        + + VN  Q  T      V+VD+SSPN+AKEMHVGHLRS
Sbjct: 82  FINIFLKNEWISKHANQANISRTLGVNAAQNDT------VVVDYSSPNVAKEMHVGHLRS 135

Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
           TIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY+
Sbjct: 136 TIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFYR 194

Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-- 474
            +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT   
Sbjct: 195 AAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRDD 254

Query: 475 -RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYD 528
             GES Y   +  +V  L+ KGL   DDG  +++ +   ++   PM ++  K DGG+ Y 
Sbjct: 255 TMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLYT 314

Query: 529 TSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
           T+D+AA   R     AD ++  TD  Q +H
Sbjct: 315 TTDIAAAAYRYHTLHADRVILFTDARQTLH 344



 Score =  223 bits (569), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 138/350 (39%), Positives = 190/350 (54%), Gaps = 54/350 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD++ R LE+LG+ V+R NHVGDWGTQFGMLIA+L+ K  +   K   ++DL+AFY
Sbjct: 135 STIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLE-KVQNDDVKDLDLSDLEAFY 193

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + +K  +D DE F K++   VV LQ  D      W  + D++    Q  YDRLNVTLT  
Sbjct: 194 RAAKHAYDSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRD 253

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +V  L+ KG                         + + KK G    
Sbjct: 254 DTMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFTNKAGDPMGVIIQKKDGGYLY 313

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++  TD  Q +H +      +KAG + P++  M+   FG++
Sbjct: 314 TTTDIAAAAYRYHTLHADRVILFTDARQTLHAQQAWLITRKAGFV-PDEFVMEHFTFGMM 372

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K FKTR+G TVKL++LLDE + R+   ++ KN   +L+  E     +AVA G +K
Sbjct: 373 LGKDGKPFKTRTGGTVKLADLLDEAIERATTLIEQKN--PDLSAEEKRAVVEAVAIGAVK 430

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
           Y+DLS NRN DYVF +D ML   GNTA Y+ YAYTRI SI   AG++  D
Sbjct: 431 YSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFARAGLDMAD 480



 Score =  137 bits (345), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 10/180 (5%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + ++ +L+  E     +AVA G +KY+DLS NRN DYVF +D ML   GNTA Y+ YAYT
Sbjct: 406  EQKNPDLSAEEKRAVVEAVAIGAVKYSDLSKNRNTDYVFDWDNMLSFEGNTAPYMQYAYT 465

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI   AG++  D+        + +  +KE ALA  LL+  +VL+LV +D   H LC+
Sbjct: 466  RIRSIFARAGLDMADI-----GGEIVIHEDKERALAVKLLQFEEVLLLVAKDGMPHLLCQ 520

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YL++++  FS FY+ C  +  D + K     T RL LA  TAK +K+   +L I+TV KM
Sbjct: 521  YLFELAGIFSSFYEACPILSSDDKTK-----TSRLRLAALTAKTLKQGLQLLGIKTVEKM 575



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 27/124 (21%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
           +FGD+Q N  M   K         NP + AQ++          + S+  + +K+E A PG
Sbjct: 35  QFGDYQANGIMGAAKKLG-----INPREFAQTVLD--------HLSIDDIAEKLEIAGPG 81

Query: 107 FVNVFLSRVYAGEQM------KDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHL 160
           F+N+FL   +  +        + + VN  Q  T      V+VD+SSPN+A++      HL
Sbjct: 82  FINIFLKNEWISKHANQANISRTLGVNAAQNDT------VVVDYSSPNVAKE--MHVGHL 133

Query: 161 PSQI 164
            S I
Sbjct: 134 RSTI 137


>gi|334706278|ref|ZP_08522144.1| arginyl-tRNA synthetase [Aeromonas caviae Ae398]
          Length = 581

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/394 (35%), Positives = 215/394 (54%), Gaps = 38/394 (9%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K       +KNP ++A +I   + +        + +I K+E+A PGF+
Sbjct: 41  GDLATNLAMLLAK-----PARKNPRELAAAIIEHLPA--------SDLIAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F    +   Q++ ++ +      L     V+VD+S+PN+AKEM V H+RST++GD  +
Sbjct: 88  NFFFDPSWLAGQVEAMVTSDNANVKLPAPQTVVVDYSAPNVAKEMAVHHIRSTVLGDVAA 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 424
           R LE+LGH VVR NH+GDWGTQFGMLIA+L+ K  +       + DL+AFY ++K+ +DE
Sbjct: 148 RALEFLGHKVVRANHIGDWGTQFGMLIAYLE-KMANEHASDMELKDLEAFYTQAKRHYDE 206

Query: 425 DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQ 481
           DE F +RA   VV LQ  D   +  W+ + D++    Q+ YDRLN++L+ +   GES Y 
Sbjct: 207 DEAFAERARNYVVKLQGGDEYCRTMWKKLVDMTMEQNQRNYDRLNISLSNKDIMGESMYN 266

Query: 482 KHMEQLVPYLEKKGLLELDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIR 536
             + Q+V  L+ KGL    +G  +++ +   ++   PM ++  KSDGGF Y T+D+A  +
Sbjct: 267 DMLPQIVADLKAKGLAVESEGATVVFLDEFKNKDGEPMGVIIQKSDGGFLYTTTDIACAK 326

Query: 537 QRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 596
            R E   AD ++Y  D  Q  H        +   TI+R   Y+   V   +H       F
Sbjct: 327 YRYENLGADRVMYFIDSRQHQHL-------MQAWTITRKAGYVPESVPLEHHA------F 373

Query: 597 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
           GM++   +D  P Y T+S     L     E+++R
Sbjct: 374 GMMLG--KDGRP-YKTRSGGTVKLVDLLNEAEER 404



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 192/349 (55%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST++GD  +R LE+LGH VVR NH+GDWGTQFGMLIA+L+ K  +       + DL+AFY
Sbjct: 139 STVLGDVAARALEFLGHKVVRANHIGDWGTQFGMLIAYLE-KMANEHASDMELKDLEAFY 197

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
            ++K+ +DEDE F +RA   VV LQ  D   +  W+ + D++    Q+ YDRLN++L+ +
Sbjct: 198 TQAKRHYDEDEAFAERARNYVVKLQGGDEYCRTMWKKLVDMTMEQNQRNYDRLNISLSNK 257

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   + Q+V  L+ KG                                     
Sbjct: 258 DIMGESMYNDMLPQIVADLKAKGLAVESEGATVVFLDEFKNKDGEPMGVIIQKSDGGFLY 317

Query: 705 ---NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +++  K     LG   ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 318 TTTDIACAKYRYENLGADRVMYFIDSRQHQHLMQAWTITRKAGYV-PESVPLEHHAFGMM 376

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + +KTRSG TVKL +LL+E   R+   L+ +N  ++L+  E ++   A+A G +K
Sbjct: 377 LGKDGRPYKTRSGGTVKLVDLLNEAEERASALLESRN--SDLSAEEKAQVVHAIAMGAVK 434

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA YL YAYTRI SI R AG++++
Sbjct: 435 YADLSKNRTTDYIFDWDLMLSFEGNTAPYLQYAYTRIQSIFRKAGVDAD 483



 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 106/180 (58%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++R+++L+  E ++   A+A G +KYADLS NR  DY+F +D ML   GNTA YL YAYT
Sbjct: 410  ESRNSDLSAEEKAQVVHAIAMGAVKYADLSKNRTTDYIFDWDLMLSFEGNTAPYLQYAYT 469

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI R AG++++ L     S  V L  + E  LA+ L++ +D +  V      H LC 
Sbjct: 470  RIQSIFRKAGVDADTL-----SGKVVLSEDAEETLAQKLIQFSDAVNGVADKGMPHLLCT 524

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++S  F  FY+ C  I KD  G  +     RLLL  ATAKV+K    +L I T+ +M
Sbjct: 525  YLYELSGNFMTFYEAC-PINKD--GVDEATRQSRLLLCAATAKVLKLGLGVLGIHTLERM 581



 Score = 48.1 bits (113), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K       +KNP ++A +I   + +        + +I K+E A PGF+
Sbjct: 41  GDLATNLAMLLAK-----PARKNPRELAAAIIEHLPA--------SDLIAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           N F    +   Q++ ++ +      L     V+VD+S+PN+A++
Sbjct: 88  NFFFDPSWLAGQVEAMVTSDNANVKLPAPQTVVVDYSAPNVAKE 131


>gi|411011655|ref|ZP_11387984.1| arginyl-tRNA ligase [Aeromonas aquariorum AAK1]
          Length = 581

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/397 (36%), Positives = 213/397 (53%), Gaps = 44/397 (11%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GD   N AM L K       +KNP ++A +I   + +        + +I K+E+A PGF+
Sbjct: 41  GDLATNLAMLLAK-----PARKNPRELAAAIIEHLPA--------SDLIAKVEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
           N F    +   Q++ ++ +      L     V+VD+S+PN+AKEM V H+RST++GD  +
Sbjct: 88  NFFFDPSWLAGQVETMVTSANANVKLPTPQTVVVDYSAPNVAKEMAVHHIRSTVLGDVAA 147

Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 424
           R LE+LGH VVR NH+GDWGTQFGMLIA+L+ K  +       + DL+AFY ++K+ +DE
Sbjct: 148 RALEFLGHKVVRANHIGDWGTQFGMLIAYLE-KMANEHASDMELRDLEAFYTQAKRHYDE 206

Query: 425 DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQ 481
           DE F +RA   VV LQ  D   +  W+ + D++    Q+ YDRLNV+LT +   GES Y 
Sbjct: 207 DEAFAERARNYVVKLQGGDEYCRTMWKKLVDMTMEQNQRNYDRLNVSLTNKDIMGESMYN 266

Query: 482 KHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLA 533
             + ++V  L+ +GL    +G  +++        GE  G I   I KSDGGF Y T+D+A
Sbjct: 267 DMLPEIVADLKARGLAVESEGATVVFLDEFKNKDGEPMGVI---IQKSDGGFLYTTTDIA 323

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
             + R E   AD ++Y  D  Q  H        +   TI+R   Y+   V   +H     
Sbjct: 324 CAKYRYETLGADRVMYFIDSRQHQHL-------MQAWTITRKAGYVPESVPLEHHA---- 372

Query: 594 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
             FGM++   +D  P Y T+S     L     E+++R
Sbjct: 373 --FGMMLG--KDGRP-YKTRSGGTVKLVDLLNEAEER 404



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 192/349 (55%), Gaps = 54/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST++GD  +R LE+LGH VVR NH+GDWGTQFGMLIA+L+ K  +       + DL+AFY
Sbjct: 139 STVLGDVAARALEFLGHKVVRANHIGDWGTQFGMLIAYLE-KMANEHASDMELRDLEAFY 197

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
            ++K+ +DEDE F +RA   VV LQ  D   +  W+ + D++    Q+ YDRLNV+LT +
Sbjct: 198 TQAKRHYDEDEAFAERARNYVVKLQGGDEYCRTMWKKLVDMTMEQNQRNYDRLNVSLTNK 257

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   + ++V  L+ +G                                     
Sbjct: 258 DIMGESMYNDMLPEIVADLKARGLAVESEGATVVFLDEFKNKDGEPMGVIIQKSDGGFLY 317

Query: 705 ---NLSLTK----KLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +++  K     LG   ++Y  D  Q  H        +KAG + P    ++   FG++
Sbjct: 318 TTTDIACAKYRYETLGADRVMYFIDSRQHQHLMQAWTITRKAGYV-PESVPLEHHAFGMM 376

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D + +KTRSG TVKL +LL+E   R+   L+ +N  ++L+  E ++   A+A G +K
Sbjct: 377 LGKDGRPYKTRSGGTVKLVDLLNEAEERAAALLESRN--SDLSAEEKAQVVHAIAMGAVK 434

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
           YADLS NR  DY+F +D ML   GNTA YL YAYTRI SI R AG++++
Sbjct: 435 YADLSKNRTTDYIFDWDLMLSFEGNTAPYLQYAYTRIQSIFRKAGVDAD 483



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 105/180 (58%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            ++R+++L+  E ++   A+A G +KYADLS NR  DY+F +D ML   GNTA YL YAYT
Sbjct: 410  ESRNSDLSAEEKAQVVHAIAMGAVKYADLSKNRTTDYIFDWDLMLSFEGNTAPYLQYAYT 469

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            RI SI R AG++++ L        V L  E E  LA+ L++ +D +  V      H LC 
Sbjct: 470  RIQSIFRKAGVDADTL-----GGKVVLNEEAEETLAQKLIQFSDAVNGVADKGMPHLLCT 524

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++S  F  FY+ C  I KD  G  +     RLLL  ATAKV+K    +L I T+ +M
Sbjct: 525  YLYELSGNFMTFYEAC-PINKD--GVDEATRQSRLLLCAATAKVLKLGLGVLGIHTLERM 581



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GD   N AM L K       +KNP ++A +I   + +        + +I K+E A PGF+
Sbjct: 41  GDLATNLAMLLAK-----PARKNPRELAAAIIEHLPA--------SDLIAKVEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           N F    +   Q++ ++ +      L     V+VD+S+PN+A++
Sbjct: 88  NFFFDPSWLAGQVETMVTSANANVKLPTPQTVVVDYSAPNVAKE 131


>gi|374334503|ref|YP_005091190.1| arginyl-tRNA synthetase [Oceanimonas sp. GK1]
 gi|372984190|gb|AEY00440.1| arginyl-tRNA synthetase [Oceanimonas sp. GK1]
          Length = 584

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/319 (39%), Positives = 190/319 (59%), Gaps = 24/319 (7%)

Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
           K   +NP  +AQ         L  N   ++++ K E+A PGF+N FL   +   QI  ++
Sbjct: 53  KPAGQNPRALAQL--------LVDNLPASELVAKTELAGPGFINFFLDSAWLARQIDAMV 104

Query: 322 VNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
            +     P + +   V+VD+S+PN+AKEMHVGHLRSTIIGD + R LE+LGH V+R NH+
Sbjct: 105 ADARANVPVVEQPQTVVVDYSAPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHKVIRANHI 164

Query: 381 GDWGTQFGMLIAH---LQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV 437
           GDWGTQFGMLIA+   L+ + PD L+    ++DL+ FY+ESK+++D D  F +RA   VV
Sbjct: 165 GDWGTQFGMLIAYLEKLEQENPDVLSSG--LSDLEQFYRESKQQYDADPDFAERARNYVV 222

Query: 438 ALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKK 494
            LQ  D      W+ + DV+ +  Q++YDRL V+LT     GES Y   +  +V  L+++
Sbjct: 223 KLQGGDAYCLNMWQKLVDVTLKHNQEVYDRLGVSLTPNDVMGESMYNPMLADIVADLQQQ 282

Query: 495 GLLELDDGRKIMW---GEDRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
           GL   D+G  +++    +++   PM ++  K DGGF Y T+D+A  + R ++  AD  +Y
Sbjct: 283 GLAVEDEGALVVYLDEYQNKDGDPMGVIVRKKDGGFLYTTTDIACAKYRYQQLGADRALY 342

Query: 550 VTDLGQGVHFRLLEESTII 568
             D  Q  H  L++  TI+
Sbjct: 343 FIDSRQ--HQHLMQAWTIV 359



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 137/359 (38%), Positives = 191/359 (53%), Gaps = 62/359 (17%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAH---LQDKFPDYLTKS 614
           H R    STIIGD + R LE+LGH V+R NH+GDWGTQFGMLIA+   L+ + PD L+  
Sbjct: 137 HLR----STIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIAYLEKLEQENPDVLSSG 192

Query: 615 PPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIY 674
             ++DL+ FY+ESK+++D D  F +RA   VV LQ  D      W+ + DV+ +  Q++Y
Sbjct: 193 --LSDLEQFYRESKQQYDADPDFAERARNYVVKLQGGDAYCLNMWQKLVDVTLKHNQEVY 250

Query: 675 DRLNVTLTER---GESFYQKHMEQLVPYLEKKG------------------------NLS 707
           DRL V+LT     GES Y   +  +V  L+++G                         + 
Sbjct: 251 DRLGVSLTPNDVMGESMYNPMLADIVADLQQQGLAVEDEGALVVYLDEYQNKDGDPMGVI 310

Query: 708 LTKKLG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKT 744
           + KK G                        +Y  D  Q  H        +KAG + P   
Sbjct: 311 VRKKDGGFLYTTTDIACAKYRYQQLGADRALYFIDSRQHQHLMQAWTIVRKAGYV-PESM 369

Query: 745 RMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEA 804
            ++   FG++LG+D + FKTRSG T+KL +LLDE   R+   L+ K   T+L+  E ++ 
Sbjct: 370 SLEHHAFGMMLGKDGRPFKTRSGGTIKLVDLLDEAEERAAALLEQK--QTDLSAEEKAQV 427

Query: 805 QQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
              VA   +KYADLS +R  DY+F +D ML   GNTA YL YAYTR+ SI R AG+N+E
Sbjct: 428 VNRVAMAAVKYADLSKSRTTDYIFDWDNMLSFEGNTAPYLQYAYTRVQSIFRKAGVNAE 486



 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 102/180 (56%), Gaps = 8/180 (4%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            + + T+L+  E ++    VA   +KYADLS +R  DY+F +D ML   GNTA YL YAYT
Sbjct: 413  EQKQTDLSAEEKAQVVNRVAMAAVKYADLSKSRTTDYIFDWDNMLSFEGNTAPYLQYAYT 472

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ SI R AG+N+E L        V +E   E ALA+ L++ ND +  V      H LC 
Sbjct: 473  RVQSIFRKAGVNAEALE-----GSVMIEAPAEEALAQKLVQFNDTVKSVADKGMPHLLCL 527

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY++S AF  FY+ C  I KD  G        RL L  ATAKV+++   +L I T+ +M
Sbjct: 528  YLYELSGAFMSFYEAC-PINKD--GVPAEARASRLRLCAATAKVLQQGLSLLGIDTLERM 584



 Score = 45.8 bits (107), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 9/88 (10%)

Query: 66  KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
           K   +NP  +AQ         L  N   ++++ K E A PGF+N FL   +   Q+  ++
Sbjct: 53  KPAGQNPRALAQL--------LVDNLPASELVAKTELAGPGFINFFLDSAWLARQIDAMV 104

Query: 126 VNG-VQPPTLNKKLRVLVDFSSPNIARK 152
            +     P + +   V+VD+S+PN+A++
Sbjct: 105 ADARANVPVVEQPQTVVVDYSAPNVAKE 132


>gi|261400736|ref|ZP_05986861.1| arginine--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269209505|gb|EEZ75960.1| arginine--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 572

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 148/364 (40%), Positives = 203/364 (55%), Gaps = 37/364 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  EVA PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LADNA----VIESAEVAGPGFI 82

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N+ L   +  + I+  + +   GV     +K   V++D+SSPN+AKEMHVGHLRS+IIGD
Sbjct: 83  NLRLRPEFLAQNIQTALNDARFGV--AKTDKPKTVVIDYSSPNLAKEMHVGHLRSSIIGD 140

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
           +ISR+L ++G+ VVR NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ +K R
Sbjct: 141 SISRVLAFMGNTVVRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRAAKVR 198

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GES 478
           FDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L      GES
Sbjct: 199 FDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGES 258

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDTSDLA 533
            Y   ++ +V  L +KGL   DDG K+++ ++     G     IV K  GGF Y ++DLA
Sbjct: 259 KYNDDLQAVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLA 318

Query: 534 AIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
            +R RI   KAD ++YV D  Q +HF  L        T SR   YL  D  +   +G +G
Sbjct: 319 CLRYRIGRLKADRLLYVVDHRQALHFEQLF-------TTSRKAGYLPED-AKAEFIG-FG 369

Query: 594 TQFG 597
           T  G
Sbjct: 370 TMMG 373



 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 189/345 (54%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+L ++G+ VVR NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 135 SSIIGDSISRVLAFMGNTVVRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 192

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L   
Sbjct: 193 RAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPE 252

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   ++ +V  L +KG                                     
Sbjct: 253 DVAGESKYNDDLQAVVDDLVQKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLY 312

Query: 705 ---NLS-LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +L+ L  ++G      ++YV D  Q +HF  L   ++KAG L P   + +F+GFG +
Sbjct: 313 ASTDLACLRYRIGRLKADRLLYVVDHRQALHFEQLFTTSRKAGYL-PEDAKAEFIGFGTM 371

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL E + R+   +K+KN   EL   E ++  + V  G +K
Sbjct: 372 MGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKN--PELGADEAAKIGKTVGIGAVK 429

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 430 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAG 474



 Score =  116 bits (290), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   E ++  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 405  KEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 464

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG           + P  L    E  LA  LL+  DVL  V      H+L  
Sbjct: 465  RVQSVFRKAGEWD-------ATAPTVLTEPLEKQLAAELLKFEDVLQSVADTAYPHYLAA 517

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY I+T FS FY+ C  ++ ++  +       RL LA+ T   +K+  D+L I  +  M
Sbjct: 518  YLYQIATLFSRFYEACPILKAESASR-----NSRLQLAKLTGDTLKQGLDLLGIDVLDVM 572



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 20/129 (15%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  E A PGF+
Sbjct: 36  GDFQINGVMGAAK-----KAKQNPRELAQKVAEA----LADNA----VIESAEVAGPGFI 82

Query: 109 NVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIH 165
           N+ L   +  + ++  + +   GV     +K   V++D+SSPN+A++      HL S I 
Sbjct: 83  NLRLRPEFLAQNIQTALNDARFGV--AKTDKPKTVVIDYSSPNLAKE--MHVGHLRSSII 138

Query: 166 DILISKAIA 174
              IS+ +A
Sbjct: 139 GDSISRVLA 147


>gi|110835103|ref|YP_693962.1| arginyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|123149267|sp|Q0VMA8.1|SYR_ALCBS RecName: Full=Arginine--tRNA ligase; AltName: Full=Arginyl-tRNA
           synthetase; Short=ArgRS
 gi|110648214|emb|CAL17690.1| arginyl-tRNA synthetase [Alcanivorax borkumensis SK2]
          Length = 584

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/349 (39%), Positives = 192/349 (55%), Gaps = 55/349 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQA 622
           STIIGD + R LE+LGH V+R NHVGDWGTQFGML+A+L+++  +   +  S  +A+L+ 
Sbjct: 140 STIIGDAVVRTLEFLGHTVIRQNHVGDWGTQFGMLLAYLEEQKTEEGERELSRELANLET 199

Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
           FY+ +K+RFDE + F  RA   VV LQ  D      W     VS    Q IYDRL V+LT
Sbjct: 200 FYRAAKQRFDESDSFADRARALVVKLQSGDDYCLTLWAEFNQVSLSHCQAIYDRLGVSLT 259

Query: 683 E---RGESFYQKHMEQLVPYLEKKGNLSLTK------------KLG-------------- 713
                GES Y   + Q+V  L+ KG LS ++            K G              
Sbjct: 260 PADVHGESAYNDDLAQVVADLDSKGLLSESQGAQCVFMDAFKNKEGEPLPVIVRKADGGY 319

Query: 714 ---------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFG 752
                                ++Y  D  Q +HF+ +   AK AG + P +T +  +GFG
Sbjct: 320 LYATSDLAALRYRASTLRADRMLYFVDQRQALHFQQMFTLAKLAGFV-PEQTELAHMGFG 378

Query: 753 VVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGC 812
            + G D + FKTR G TVKL +LLDE  +R+   +++KN   +L   EL    ++V  G 
Sbjct: 379 TMNGPDGRPFKTRDGGTVKLVDLLDEAEQRAFALVQEKN--PQLDDEELRNIARSVGIGA 436

Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
           +KYADLS NR+ DY+F+F++ML   GNTA YLLYAYTR+AS+ R A ++
Sbjct: 437 VKYADLSKNRSSDYIFNFEQMLSFEGNTAPYLLYAYTRVASVFRKAELD 485



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/329 (39%), Positives = 191/329 (58%), Gaps = 28/329 (8%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N A+ L K     G K  P D+A+ + + + ++ A        + K+++A PGF+
Sbjct: 41  GDFATNIALMLAK---PAGMK--PRDLAEKLIAALPNDSA--------VAKVDIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F +  +    +   + +   G+  P   +   V+VD+SSPN+AKEMHVGHLRSTIIGD
Sbjct: 88  NFFQADDWLTGLLDSALADDFLGISRP--EQPQTVVVDYSSPNLAKEMHVGHLRSTIIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQAFYKESK 419
            + R LE+LGH V+R NHVGDWGTQFGML+A+L+++  +   +  S  +A+L+ FY+ +K
Sbjct: 146 AVVRTLEFLGHTVIRQNHVGDWGTQFGMLLAYLEEQKTEEGERELSRELANLETFYRAAK 205

Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
           +RFDE + F  RA   VV LQ  D      W     VS    Q IYDRL V+LT     G
Sbjct: 206 QRFDESDSFADRARALVVKLQSGDDYCLTLWAEFNQVSLSHCQAIYDRLGVSLTPADVHG 265

Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSD 531
           ES Y   + Q+V  L+ KGLL    G + ++      ++   +P+ + K+DGG+ Y TSD
Sbjct: 266 ESAYNDDLAQVVADLDSKGLLSESQGAQCVFMDAFKNKEGEPLPVIVRKADGGYLYATSD 325

Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFR 560
           LAA+R R    +AD ++Y  D  Q +HF+
Sbjct: 326 LAALRYRASTLRADRMLYFVDQRQALHFQ 354



 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 11/189 (5%)

Query: 931  RRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 990
            +R+   +++KN   +L   EL    ++V  G +KYADLS NR+ DY+F+F++ML   GNT
Sbjct: 407  QRAFALVQEKN--PQLDDEELRNIARSVGIGAVKYADLSKNRSSDYIFNFEQMLSFEGNT 464

Query: 991  AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTR 1050
            A YLLYAYTR+AS+ R A     +L +A  S    L  + E  LA  L++  +VL  V  
Sbjct: 465  APYLLYAYTRVASVFRKA-----ELDMANVSGDFLLNEDAEHTLAARLVQFGEVLQNVAD 519

Query: 1051 DLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
                H L  YLYD++  FS FY++C  +  + E     +   RL LA  TA+ +K   ++
Sbjct: 520  KGQPHLLSAYLYDVAGLFSSFYEHCPILSSEDE----RIRQSRLKLAALTARTLKHGMEL 575

Query: 1111 LNIRTVHKM 1119
            L +  + +M
Sbjct: 576  LGLSPLERM 584


>gi|260906982|ref|ZP_05915304.1| arginyl-tRNA synthetase [Brevibacterium linens BL2]
          Length = 588

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 160/461 (34%), Positives = 233/461 (50%), Gaps = 65/461 (14%)

Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
           S+   L+D F  A++ +F E   +   V  +++     F DFQ N A+ L K  K K   
Sbjct: 3   SLTSLLNDRFALALEQSFGEDFKRRDPVIRSSQ-----FADFQANVALPLAKELKSK--- 54

Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNV-FLSRVYAGEQIKDIIVNG 324
             P DIA +I          N  LA + +  E++ PGF+N+ F S   A    +      
Sbjct: 55  --PRDIANTIVG--------NLDLADICETPEISGPGFINLTFTSDFLASTLNQGTAAEA 104

Query: 325 VQ--PPTLNKKL---------RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHD 373
           V   P T              RV++D+S+PN+AKEMHVGHLR+T++GD ++R  E+LG+ 
Sbjct: 105 VAETPATTEGATSEGAAAAGQRVVIDYSAPNVAKEMHVGHLRTTVVGDALARTHEFLGNT 164

Query: 374 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAY 433
           VVR NH+GDWGT FGMLI HL D   +  T     A+  AFY+ ++ +FD DE F  RA 
Sbjct: 165 VVRQNHIGDWGTPFGMLIEHLLDVGIESETAQDISANPNAFYQAARAKFDSDEAFATRAR 224

Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPY 490
             VV LQ  D    + WE +   S+  F  IY  L+VTLT+    GES Y   +  +   
Sbjct: 225 ARVVELQGGDKQTLELWERLVGFSKTYFNHIYSLLDVTLTDDDLAGESIYNDDLAAVCQE 284

Query: 491 LEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKAD 545
           LE  GL  + DG   ++     G +   +P+ I KSDGG+ Y T+DLAA+R R+    AD
Sbjct: 285 LEDAGLARISDGALCVFPEGFTGREGEPLPLIIRKSDGGYGYATTDLAAVRHRVRNLNAD 344

Query: 546 WIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDV----VRLNHV-GDWG----TQF 596
            ++YV    Q +HF ++        +I+R   +L   V    V++ +V GD G    T+ 
Sbjct: 345 RVLYVVGTPQAMHFEMVF-------SIARAAGWLPEGVEFEHVKIGNVLGDDGKILRTRS 397

Query: 597 G--MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635
           G  + +A L D+          +A  +A  +ES   FD +E
Sbjct: 398 GAPVRLAELLDE---------AVARAKATLQESNVEFDAEE 429



 Score =  185 bits (470), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 165/344 (47%), Gaps = 53/344 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           +T++GD ++R  E+LG+ VVR NH+GDWGT FGMLI HL D   +  T     A+  AFY
Sbjct: 147 TTVVGDALARTHEFLGNTVVRQNHIGDWGTPFGMLIEHLLDVGIESETAQDISANPNAFY 206

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
           + ++ +FD DE F  RA   VV LQ  D    + WE +   S+  F  IY  L+VTLT+ 
Sbjct: 207 QAARAKFDSDEAFATRARARVVELQGGDKQTLELWERLVGFSKTYFNHIYSLLDVTLTDD 266

Query: 684 --RGESFYQKHMEQLVPYLEKKG------------------------NLSLTKKLG---- 713
              GES Y   +  +   LE  G                         L + K  G    
Sbjct: 267 DLAGESIYNDDLAAVCQELEDAGLARISDGALCVFPEGFTGREGEPLPLIIRKSDGGYGY 326

Query: 714 -------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                              ++YV    Q +HF ++   A+ AG L P     + V  G V
Sbjct: 327 ATTDLAAVRHRVRNLNADRVLYVVGTPQAMHFEMVFSIARAAGWL-PEGVEFEHVKIGNV 385

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K  +TRSG  V+L+ELLDE + R+   L++ N   E    E +   + V  G +K
Sbjct: 386 LGDDGKILRTRSGAPVRLAELLDEAVARAKATLQESN--VEFDAEEEALVAKTVGIGAVK 443

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
           YADLS   +  Y F  D+ML   GNTA YL YA  RI SI R A
Sbjct: 444 YADLSVAHDTSYTFDLDRMLVPIGNTAPYLQYAGARIRSILRKA 487



 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 932  RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
            R+   L++ N   E    E +   + V  G +KYADLS   +  Y F  D+ML   GNTA
Sbjct: 413  RAKATLQESN--VEFDAEEEALVAKTVGIGAVKYADLSVAHDTSYTFDLDRMLVPIGNTA 470

Query: 992  VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
             YL YA  RI SI R A  +      A  + P+ L    E  L   LL  +DV+  V   
Sbjct: 471  PYLQYAGARIRSILRKAEGD------AFTAAPIHLGEAAERDLGLALLGFSDVVAEVVAG 524

Query: 1052 LCLHHLCEYLYDISTAFSEFYDNC-YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDI 1110
               H LC YL+D++ +F+ FY+ C   I + AE     V   RL L++   +V++    +
Sbjct: 525  SAPHRLCTYLFDLAQSFTSFYEQCPVLIAETAE-----VRDSRLRLSQTVLEVLEAGLGV 579

Query: 1111 LNIRTVHKM 1119
            L IR   +M
Sbjct: 580  LGIRVPERM 588



 Score = 46.6 bits (109), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 30/155 (19%)

Query: 10  SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
           S+   L+D F  A++ +F E   +   V  +++     F DFQ N A+ L K  K K   
Sbjct: 3   SLTSLLNDRFALALEQSFGEDFKRRDPVIRSSQ-----FADFQANVALPLAKELKSK--- 54

Query: 70  KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNV-FLSRVYAGEQMKDIIVNG 128
             P DIA +I          N  LA + +  E + PGF+N+ F S   A    +      
Sbjct: 55  --PRDIANTIVG--------NLDLADICETPEISGPGFINLTFTSDFLASTLNQGTAAEA 104

Query: 129 VQ--PPTLNKKL---------RVLVDFSSPNIARK 152
           V   P T              RV++D+S+PN+A++
Sbjct: 105 VAETPATTEGATSEGAAAAGQRVVIDYSAPNVAKE 139


>gi|323144078|ref|ZP_08078721.1| arginine--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322416154|gb|EFY06845.1| arginine--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 578

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 149/400 (37%), Positives = 226/400 (56%), Gaps = 49/400 (12%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDF  N A+ L K  K      NP  +A+         L  N   +  I+K E+A PGF+
Sbjct: 41  GDFATNLALILAKPLK-----MNPRAVAEL--------LIKNLEPSARIEKTEIAGPGFI 87

Query: 305 NVFLSRVYAGEQIKDI---IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
           N F+S  +  E+++++   +  G++   +  K  V+VD+S+PN+AKEM V H+RST+IGD
Sbjct: 88  NFFVSDSFTAEKLQEMRSDVRLGIKEADV--KDIVVVDYSAPNVAKEMAVHHIRSTVIGD 145

Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421
            + R+LE+LGH V+R NHVGDWGTQFGMLIA+L+++   Y T    ++D +AFY+ +K+R
Sbjct: 146 AVVRVLEFLGHKVIRANHVGDWGTQFGMLIAYLEEQENKYGT-DLDLSDFEAFYRAAKER 204

Query: 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GES 478
           +D DE F   A   VV LQ  D   KK W+ +  ++    QK+YDRL+VTLTE+   GES
Sbjct: 205 YDSDEDFAVLARSYVVKLQSGDEYCKKMWQKLVKMTMDQNQKLYDRLDVTLTEKDVMGES 264

Query: 479 FYQKHMEQLVPYLEKKGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTS 530
            Y   + ++V  L +KG+   D G  +++        GE  G I   + K DGG+ Y T+
Sbjct: 265 LYNDMLPKIVEDLMQKGIAVEDQGAVVVFLPQFKNKDGEPLGEI---VRKKDGGYLYTTT 321

Query: 531 DLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVG 590
           D+A ++ R+E  KA+ ++Y  D  Q  H   LE +     +I+R+  Y   + VR+ H  
Sbjct: 322 DIACVKYRVETLKANRLMYFIDSRQHQH---LEAAW----SIARMAGY-ADESVRIEH-- 371

Query: 591 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
                FGM++   +D  P Y T+S     L+    E++ R
Sbjct: 372 ---EAFGMMLG--KDGKP-YKTRSGGTVKLRDLLDEAENR 405



 Score =  212 bits (540), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 137/346 (39%), Positives = 185/346 (53%), Gaps = 54/346 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           ST+IGD + R+LE+LGH V+R NHVGDWGTQFGMLIA+L+++   Y T    ++D +AFY
Sbjct: 140 STVIGDAVVRVLEFLGHKVIRANHVGDWGTQFGMLIAYLEEQENKYGT-DLDLSDFEAFY 198

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K+R+D DE F   A   VV LQ  D   KK W+ +  ++    QK+YDRL+VTLTE+
Sbjct: 199 RAAKERYDSDEDFAVLARSYVVKLQSGDEYCKKMWQKLVKMTMDQNQKLYDRLDVTLTEK 258

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   + ++V  L +KG                                     
Sbjct: 259 DVMGESLYNDMLPKIVEDLMQKGIAVEDQGAVVVFLPQFKNKDGEPLGEIVRKKDGGYLY 318

Query: 705 ----------NLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
                      +   K   ++Y  D  Q  H       A+ AG  + +  R++   FG++
Sbjct: 319 TTTDIACVKYRVETLKANRLMYFIDSRQHQHLEAAWSIARMAGYADES-VRIEHEAFGMM 377

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           LG+D K +KTRSG TVKL +LLDE   R +  L DK R++ L   +  E    +A G +K
Sbjct: 378 LGKDGKPYKTRSGGTVKLRDLLDEAENR-VTALLDK-RNSPLQGKDRDEVIHNIAIGAVK 435

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
           YADLS NR  DYVF +D ML   GNTA YL YAY+RI SI R A I
Sbjct: 436 YADLSKNRMTDYVFDWDLMLSFDGNTAPYLQYAYSRIRSIFRKAEI 481



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 102/196 (52%), Gaps = 18/196 (9%)

Query: 930  LRRSLDKLKDK------NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
            LR  LD+ +++       R++ L   +  E    +A G +KYADLS NR  DYVF +D M
Sbjct: 395  LRDLLDEAENRVTALLDKRNSPLQGKDRDEVIHNIAIGAVKYADLSKNRMTDYVFDWDLM 454

Query: 984  LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
            L   GNTA YL YAY+RI SI R A I         +   + L+ E E  LA  LL   D
Sbjct: 455  LSFDGNTAPYLQYAYSRIRSIFRKAEI---------EPGAIVLQEEAENDLATKLLAFED 505

Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
             +  V      H LC YL+++S  F  FY+ C  ++ D   +IK     RL L + TAKV
Sbjct: 506  TVKSVAEKAMPHLLCTYLFELSGIFMRFYEACPVLKGDVALEIK---ASRLALCDLTAKV 562

Query: 1104 MKKCFDILNIRTVHKM 1119
            +K+   +L I T+ +M
Sbjct: 563  LKQGLGLLGINTMEQM 578



 Score = 46.2 bits (108), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 18/107 (16%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDF  N A+ L K  K      NP  +A+         L  N   +  I+K E A PGF+
Sbjct: 41  GDFATNLALILAKPLK-----MNPRAVAEL--------LIKNLEPSARIEKTEIAGPGFI 87

Query: 109 NVFLSRVYAGEQMKDI---IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
           N F+S  +  E+++++   +  G++   +  K  V+VD+S+PN+A++
Sbjct: 88  NFFVSDSFTAEKLQEMRSDVRLGIKEADV--KDIVVVDYSAPNVAKE 132


>gi|392553905|ref|ZP_10301042.1| arginyl-tRNA ligase [Pseudoalteromonas undina NCIMB 2128]
          Length = 580

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/357 (38%), Positives = 198/357 (55%), Gaps = 60/357 (16%)

Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPP 616
           H R    STIIGD + R LE+ G  VVR NH+GDWGTQFGMLIAHL+D+    +   +  
Sbjct: 133 HLR----STIIGDAVVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDQINQGVDLDTVA 188

Query: 617 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
           +ADL+ FY+++KKRFD++E F  +A   VV LQ  D   +K W++    S +  +++Y R
Sbjct: 189 LADLETFYRDAKKRFDDEEGFADKARNYVVKLQSGDAHCEKLWKLFIATSVKHSEEVYKR 248

Query: 677 LNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSL------------------------- 708
           LNVTLT      ES Y   +  ++  L+ K N+++                         
Sbjct: 249 LNVTLTPADIMAESAYNSELNDIISLLKDK-NIAVESQGAQVVFLDELANKDGEPSAFIV 307

Query: 709 --------------------TKKLG---IVYVTDLGQGVHFRLLEECAKKAGILNPNKTR 745
                               + KLG   I+   D  Q +HF  +E  A+KAG+L  ++T 
Sbjct: 308 QKSGGGFLYATTDLAACDYRSNKLGAERILIFVDARQSLHFNQVELTARKAGLLR-DETS 366

Query: 746 MDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805
            +F  FG ++G D K FKTR+G TVKL++LL+E + R+  KL +  R ++L+  + SE  
Sbjct: 367 YEFCPFGTMMGADGKPFKTRTGGTVKLADLLEESITRAAAKLAE--RESDLSDEDRSEIA 424

Query: 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
           + V  G +KYADLS +R  DY+F++D ML   G TA YL YAYTR+ SI R +G+++
Sbjct: 425 RKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRVRSIFRKSGVDA 481



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 202/372 (54%), Gaps = 33/372 (8%)

Query: 205 MSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 263
           M++R  L +    A+  A  PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRTILVEKAIAAMTAAGLPE--DTNPAVTQSTRP---QFGDYQINGAMGAAKKMK--- 52

Query: 264 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
              NP ++AQ I   +         ++ + +K E+A PGF+N+ L   +  + ++    N
Sbjct: 53  --SNPRELAQKIIDQL--------DVSDIAEKTEIAGPGFINIHLKPEFLAQSVQ--AAN 100

Query: 324 GVQPPTLN---KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
                 +N   K  +V+VD+SSPN+AKEMHVGHLRSTIIGD + R LE+ G  VVR NH+
Sbjct: 101 NHAKLAVNEHAKPQKVVVDYSSPNLAKEMHVGHLRSTIIGDAVVRALEFRGDTVVRQNHM 160

Query: 381 GDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
           GDWGTQFGMLIAHL+D+    +   +  +ADL+ FY+++KKRFD++E F  +A   VV L
Sbjct: 161 GDWGTQFGMLIAHLEDQINQGVDLDTVALADLETFYRDAKKRFDDEEGFADKARNYVVKL 220

Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGL 496
           Q  D   +K W++    S +  +++Y RLNVTLT      ES Y   +  ++  L+ K +
Sbjct: 221 QSGDAHCEKLWKLFIATSVKHSEEVYKRLNVTLTPADIMAESAYNSELNDIISLLKDKNI 280

Query: 497 LELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT 551
                G ++++      +D       + KS GGF Y T+DLAA   R  +  A+ I+   
Sbjct: 281 AVESQGAQVVFLDELANKDGEPSAFIVQKSGGGFLYATTDLAACDYRSNKLGAERILIFV 340

Query: 552 DLGQGVHFRLLE 563
           D  Q +HF  +E
Sbjct: 341 DARQSLHFNQVE 352



 Score =  116 bits (291), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 930  LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGN 989
            + R+  KL +  R ++L+  + SE  + V  G +KYADLS +R  DY+F++D ML   G 
Sbjct: 401  ITRAAAKLAE--RESDLSDEDRSEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGA 458

Query: 990  TAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVT 1049
            TA YL YAYTR+ SI R +G+++  L+       VS+   +E  LA  LL++ +VL L+ 
Sbjct: 459  TAPYLQYAYTRVRSIFRKSGVDAASLK-----ADVSIIEPQEKTLALKLLQLEEVLDLMI 513

Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFD 1109
             +   H LC YLY++++ +  FY+ C  ++   EG   +V   RL+L    A  +K   D
Sbjct: 514  NEATPHVLCGYLYELASLYMTFYEACPVLK---EGVEPSVRDSRLVLCNLVADTLKTGLD 570

Query: 1110 ILNIRTVHKM 1119
            +L I  + +M
Sbjct: 571  LLGIEVMEQM 580



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 30/151 (19%)

Query: 9   MSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
           M++R  L +    A+  A  PE  D   +V  +      +FGD+Q N AM   K  K   
Sbjct: 1   MNIRTILVEKAIAAMTAAGLPE--DTNPAVTQSTRP---QFGDYQINGAMGAAKKMK--- 52

Query: 68  EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNV-----FLSR-VYAGEQM 121
              NP ++AQ I   +         ++ + +K E A PGF+N+     FL++ V A    
Sbjct: 53  --SNPRELAQKIIDQL--------DVSDIAEKTEIAGPGFINIHLKPEFLAQSVQAANNH 102

Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
             + VN    P      +V+VD+SSPN+A++
Sbjct: 103 AKLAVNEHAKPQ-----KVVVDYSSPNLAKE 128


>gi|291044019|ref|ZP_06569735.1| arginyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|291012482|gb|EFE04471.1| arginyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 581

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 189/345 (54%), Gaps = 55/345 (15%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           S+IIGD+ISR+LE+ G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY
Sbjct: 144 SSIIGDSISRVLEFTGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFY 201

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           + +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L   
Sbjct: 202 RAAKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPE 261

Query: 685 ---GESFYQKHMEQLVPYLEKKG------------------------------------- 704
              GES Y   ++ +V  L +KG                                     
Sbjct: 262 DVAGESKYNDDLQPVVDDLVEKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLY 321

Query: 705 ---NLS-LTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
              +L+ L  ++G      ++YV D  Q +HF  L   ++KAG L P   + +F+GFG +
Sbjct: 322 ASTDLACLRYRIGRLKAGRLLYVVDHRQALHFEQLFTTSRKAGYL-PENAKAEFIGFGTM 380

Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
           +G+D K FKTRSGDTVKL +LL E + R+   +K+KN   EL   E ++  + V  G +K
Sbjct: 381 MGKDGKPFKTRSGDTVKLVDLLTEAVERATALVKEKN--PELGADEAAKIGKTVGIGAVK 438

Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
           YADLS NR  DYVF +D ML   GNTA YL YAYTR+ S+ R AG
Sbjct: 439 YADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYTRVQSVFRKAG 483



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 137/333 (41%), Positives = 186/333 (55%), Gaps = 36/333 (10%)

Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  EVA PGF+
Sbjct: 45  GDFQINGVMGAAK-----KAKQNPRELAQKVADA----LAGNA----VIESAEVAGPGFI 91

Query: 305 NVFLSRVYAGEQIKDI-------IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRST 357
           N+ L   +  + I          +    QP T      V++D+SSPN+AKEMHVGHLRS+
Sbjct: 92  NLRLRHEFLAQNIHAALNDARFGVAKTAQPQT------VVIDYSSPNLAKEMHVGHLRSS 145

Query: 358 IIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKE 417
           IIGD+ISR+LE+ G+ V+R NHVGDWGTQFGML+A+L ++  D    +  +ADL+ FY+ 
Sbjct: 146 IIGDSISRVLEFTGNTVIRQNHVGDWGTQFGMLVAYLVEQQKD--NAAFELADLEQFYRA 203

Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-- 475
           +K RFDED  F   A + VV LQ  D      W+   D+S    Q +YD L + L     
Sbjct: 204 AKVRFDEDPAFADTAREYVVKLQGGDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDV 263

Query: 476 -GESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RGSIPMTIV-KSDGGFTYDT 529
            GES Y   ++ +V  L +KGL   DDG K+++ ++     G     IV K  GGF Y +
Sbjct: 264 AGESKYNDDLQPVVDDLVEKGLAVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYAS 323

Query: 530 SDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
           +DLA +R RI   KA  ++YV D  Q +HF  L
Sbjct: 324 TDLACLRYRIGRLKAGRLLYVVDHRQALHFEQL 356



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 940  KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
            K ++ EL   E ++  + V  G +KYADLS NR  DYVF +D ML   GNTA YL YAYT
Sbjct: 414  KEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLSFEGNTAPYLQYAYT 473

Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
            R+ S+ R AG           + P  L    E  LA  LL+  +VL  V      H+L  
Sbjct: 474  RVQSVFRKAGEWD-------ATAPTVLTEPLEKQLAAELLKFENVLQSVADTAYPHYLAA 526

Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
            YLY  +T FS FY+ C  ++  AEG  +     RL LA+ T   +K+  D+L I  +  M
Sbjct: 527  YLYQAATLFSRFYEACPILK--AEGASR---NSRLQLAKLTGNTLKQGLDLLGIDVLDVM 581



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 28/132 (21%)

Query: 49  GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
           GDFQ N  M   K       K+NP ++AQ +A      LA N     VI+  E A PGF+
Sbjct: 45  GDFQINGVMGAAK-----KAKQNPRELAQKVADA----LAGNA----VIESAEVAGPGFI 91

Query: 109 NVFLSRVYAGEQMKDI-------IVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLP 161
           N+ L   +  + +          +    QP T      V++D+SSPN+A++      HL 
Sbjct: 92  NLRLRHEFLAQNIHAALNDARFGVAKTAQPQT------VVIDYSSPNLAKE--MHVGHLR 143

Query: 162 SQIHDILISKAI 173
           S I    IS+ +
Sbjct: 144 SSIIGDSISRVL 155


>gi|350568269|ref|ZP_08936671.1| arginine--tRNA ligase [Propionibacterium avidum ATCC 25577]
 gi|348661489|gb|EGY78172.1| arginine--tRNA ligase [Propionibacterium avidum ATCC 25577]
          Length = 556

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/364 (39%), Positives = 205/364 (56%), Gaps = 35/364 (9%)

Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSI-ASVVTSELATNPSLAKVIDKIEVAKP 301
           +FG FQ N A+ L K      E + P D+A  I A +   +L   P         ++A P
Sbjct: 29  QFGHFQSNVALRLAK-----EEGRPPRDVAADIVAKLDVEDLCETP---------DIAGP 74

Query: 302 GFVNVFLSRVYAGEQIKDIIVN-GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIG 360
           GF+N+ L          D+I +  V    + +  RV++D+S+PN+AK+MHVGHLRSTIIG
Sbjct: 75  GFINLRLRSDVLARVASDLITDPDVGIAQVEQPQRVVIDYSAPNVAKQMHVGHLRSTIIG 134

Query: 361 DTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKK 420
           D  +R+L   GH V+  NH+GDWGTQFGML+ ++ +   D      P  +++  YK+SKK
Sbjct: 135 DCFNRVLSSQGHTVIPQNHLGDWGTQFGMLVEYIVENRMDVSEFDLP--EVEQLYKDSKK 192

Query: 421 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GE 477
            FD D  F  RA + VV LQ  D +  + W  + DVS   F   Y RL+V LT+    GE
Sbjct: 193 TFDADPEFADRARRRVVKLQGGDEETLRIWRTLIDVSLEGFNVNYARLSVLLTDEDLAGE 252

Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQ 537
           S Y   + ++V  LE  GL   D+G   ++ E + + PM + K+DGGF YD +DLAAIR+
Sbjct: 253 STYNDDLPRVVDELEADGLAVEDNGALCVFVEGQDA-PMIVRKNDGGFGYDATDLAAIRR 311

Query: 538 RIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597
           R+ + KAD I+YVTD+ Q  HF +L +       ++R+ E+L  D V   HVG     +G
Sbjct: 312 RVGKLKADRIIYVTDVRQSHHFEVLFK-------VARMAEFLPDD-VEAQHVG-----YG 358

Query: 598 MLIA 601
           M++ 
Sbjct: 359 MVLG 362



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 167/350 (47%), Gaps = 70/350 (20%)

Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
           STIIGD  +R+L   GH V+  NH+GDWGTQFGML+ ++ +   D      P  +++  Y
Sbjct: 130 STIIGDCFNRVLSSQGHTVIPQNHLGDWGTQFGMLVEYIVENRMDVSEFDLP--EVEQLY 187

Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
           K+SKK FD D  F  RA + VV LQ  D +  + W  + DVS   F   Y RL+V LT+ 
Sbjct: 188 KDSKKTFDADPEFADRARRRVVKLQGGDEETLRIWRTLIDVSLEGFNVNYARLSVLLTDE 247

Query: 685 ---GESFYQKHMEQLVPYLEKKG-----------------------------------NL 706
              GES Y   + ++V  LE  G                                     
Sbjct: 248 DLAGESTYNDDLPRVVDELEADGLAVEDNGALCVFVEGQDAPMIVRKNDGGFGYDATDLA 307

Query: 707 SLTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 760
           ++ +++G      I+YVTD+ Q  HF +L + A+ A  L P+      VG+G+VLG D +
Sbjct: 308 AIRRRVGKLKADRIIYVTDVRQSHHFEVLFKVARMAEFL-PDDVEAQHVGYGMVLGPDGR 366

Query: 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSH 820
            FKTR G TV L+ LLDE               T   P         +A   IKYADLS 
Sbjct: 367 PFKTRDGGTVSLASLLDEA-------------ETHAAPN--------IALAAIKYADLST 405

Query: 821 NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDP 870
               DYVF  ++M+   G+T  YL YA+ R++ I R A   +E  P  DP
Sbjct: 406 GLQKDYVFDAERMVQTTGDTGPYLQYAHARVSQILRKAA--AEANPNVDP 453



 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 96/206 (46%), Gaps = 18/206 (8%)

Query: 927  GYGLRRSLD--KLKDKNRHTELTPTELSEAQQ----AVAYGCIKYADLSHNRNLDYVFSF 980
            GYG+    D    K ++  T    + L EA+      +A   IKYADLS     DYVF  
Sbjct: 356  GYGMVLGPDGRPFKTRDGGTVSLASLLDEAETHAAPNIALAAIKYADLSTGLQKDYVFDA 415

Query: 981  DKMLDDRGNTAVYLLYAYTRIASIARTAGINSE-------DLRVAAQSTPVSLEHEKEFA 1033
            ++M+   G+T  YL YA+ R++ I R A   +        DL          L+   E  
Sbjct: 416  ERMVQTTGDTGPYLQYAHARVSQILRKAAAEANPNVDPEADLESMVWGRISVLDEPAEQQ 475

Query: 1034 LAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGR 1093
            LA  L R  +V+ +V  DL  H LC YLY+++ A+S FY+ C  +    E     V   R
Sbjct: 476  LALLLSRFGEVVEVVANDLTPHKLCTYLYELAGAYSVFYEQCPVLRSTGE-----VRGSR 530

Query: 1094 LLLAEATAKVMKKCFDILNIRTVHKM 1119
            L L  AT +V+ +  D+L I    +M
Sbjct: 531  LALCAATRRVLGRGLDLLGIDAPDRM 556



 Score = 43.9 bits (102), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 16/108 (14%)

Query: 47  KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSI-ASVVTSELATNPSLAKVIDKIEAAKP 105
           +FG FQ N A+ L K      E + P D+A  I A +   +L   P +A          P
Sbjct: 29  QFGHFQSNVALRLAK-----EEGRPPRDVAADIVAKLDVEDLCETPDIAG---------P 74

Query: 106 GFVNVFLSRVYAGEQMKDIIVN-GVQPPTLNKKLRVLVDFSSPNIARK 152
           GF+N+ L          D+I +  V    + +  RV++D+S+PN+A++
Sbjct: 75  GFINLRLRSDVLARVASDLITDPDVGIAQVEQPQRVVIDYSAPNVAKQ 122


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.319    0.136    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,336,485,040
Number of Sequences: 23463169
Number of extensions: 745623404
Number of successful extensions: 2068195
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4803
Number of HSP's successfully gapped in prelim test: 572
Number of HSP's that attempted gapping in prelim test: 2024332
Number of HSP's gapped (non-prelim): 24094
length of query: 1119
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 965
effective length of database: 8,745,867,341
effective search space: 8439761984065
effective search space used: 8439761984065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 83 (36.6 bits)