BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6783
(1119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-trna Synthetase Complexed
With The Trna(arg) And L-arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
Length = 607
Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 131/283 (46%), Gaps = 21/283 (7%)
Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN----GVQPPTLNKKLRVLVDFSSPNIAKE 348
++K+E P F + A I DI+ G NKK V+++FSSPNIAK
Sbjct: 100 LEKVEANGPFIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKK--VIIEFSSPNIAKP 157
Query: 349 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 408
H GHLRSTIIG ++ L E LG +V+R+N++GDWG QFG+L + + PI
Sbjct: 158 FHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPI 217
Query: 409 ADLQAFYKESKKRFDE-------DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDF 461
L Y K +E ++ +A + ++ D + K W+ + S +
Sbjct: 218 HHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKY 277
Query: 462 QKIYDRLNVTL-TERGESFYQKH-MEQLVPYLEKKGLLELDDGRKIM----WGEDRGSIP 515
Y RLN+ GES K M + + ++KGL D G ++ + + G
Sbjct: 278 IDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGK-- 335
Query: 516 MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
+ KSDG Y T D+ A R E+ D ++YV Q +H
Sbjct: 336 AIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLH 378
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 142/348 (40%), Gaps = 63/348 (18%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIG ++ L E LG +V+R+N++GDWG QFG+L + + PI L Y
Sbjct: 165 STIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDVY 224
Query: 625 KESKKRFDE-------DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
K +E ++ +A + ++ D + K W+ + S + Y RL
Sbjct: 225 VRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARL 284
Query: 678 NVTL-TERGESFYQKH-MEQLVPYLEKKG------------------------------- 704
N+ GES K M + + ++KG
Sbjct: 285 NIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGT 344
Query: 705 NLSLTKKLG-------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
L LT+ +G ++YV Q +H E K+ G + V F
Sbjct: 345 TLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGF--EWAKDLQHVNF 402
Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKL-KDKNRHTELTPTELSEAQQAVAY 810
G+V G TR G V L +L+E + + + K++N++ ++ E E V
Sbjct: 403 GMVQG-----MSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPE--EVADLVGI 455
Query: 811 GCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
+ D+ R +Y F +++ML G+T YL YA++R+ S+ R A
Sbjct: 456 SAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNA 503
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 17/186 (9%)
Query: 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYA 997
K++N++ ++ E E V + D+ R +Y F +++ML G+T YL YA
Sbjct: 435 KNENKYAQIEHPE--EVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYA 492
Query: 998 YTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHH- 1056
++R+ S+ R A +++ + A + + KE A AK L+R+ V R+ H
Sbjct: 493 HSRLRSVERNASGITQEKWINADFSLL-----KEPA-AKLLIRLLGQYPDVLRNAIKTHE 546
Query: 1057 ---LCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
+ YL+ ++ S YD + G+ + + T RL L A +V+ +L +
Sbjct: 547 PTTVVTYLFKLTHQVSSCYDVLWV-----AGQTEELATARLALYGAARQVLYNGMRLLGL 601
Query: 1114 RTVHKM 1119
V +M
Sbjct: 602 TPVERM 607
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 15/151 (9%)
Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
K GDF A L K+ K + P +IA+ I + L K ++ G
Sbjct: 37 KLGDFGTPIAFKLAKLLK-----RPPIEIAEKIVEKLKLNLPEGIKDVKAVN-------G 84
Query: 303 FVNVFLSRV-YAGEQIKDIIVNG--VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
++NVF+ +A I DI+ G + K +V+V+ +S N K +H+GH R+ I+
Sbjct: 85 YINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAIL 144
Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGML 390
GD ++R+L +LG++V N++ D G QF +
Sbjct: 145 GDVMARILRFLGYEVEVQNYIDDLGIQFAQV 175
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 98/196 (50%), Gaps = 15/196 (7%)
Query: 929 GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
++R+ + +++KN L+ E +E + V G I+Y + ++ + +F ++ +L+ G
Sbjct: 444 AVKRARELIEEKN--PALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEG 501
Query: 989 NTAVYLLYAYTRIASIARTA-----GINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
+A Y+ YA+ R +SI R A ++ E L A T +S E+E L L +
Sbjct: 502 ESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLS---ERERELVIMLSKFPR 558
Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
++ +D+ H + + ++++ F++FY + + + K EG V RLLL A +V
Sbjct: 559 IVEQAGKDVKPHLIAWFANELASLFNKFYMD-HPVLKAEEG----VREARLLLVMAVEQV 613
Query: 1104 MKKCFDILNIRTVHKM 1119
+K ++ I +M
Sbjct: 614 LKNALYLMGIEAPERM 629
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 761 KFKTRSGDTVKLS--ELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADL 818
KF R G V + E++ E ++R+ + +++KN L+ E +E + V G I+Y +
Sbjct: 424 KFSGRKGTWVGFTVDEVIQEAVKRARELIEEKN--PALSDEEKAEVAEKVGIGAIRYNLI 481
Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
++ + +F ++ +L+ G +A Y+ YA+ R +SI R A
Sbjct: 482 KYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKA 521
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 599
+ I+GD ++R+L +LG++V N++ D G QF +
Sbjct: 141 NAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQV 175
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 336 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQ 386
VLV+ +S N KE+HVGHLR+ +GD I+R+L Y G +V+ LN++ D G Q
Sbjct: 105 VLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQ 155
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 953 EAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG-IN 1011
EA + VA G I+++ + F + + L G+T Y+ YA+ R SI R AG
Sbjct: 432 EAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWG 491
Query: 1012 SEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEF 1071
+ DL +Q+TP E ALA LL + ++ + H L +YL D++ +++ +
Sbjct: 492 APDL---SQATPY------ERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAY 542
Query: 1072 YDNCYCIEKDAEGKIKTVHTG----RLLLAEATAKVMKKCFDILNI 1113
Y+ + + T G RL L ++ + + D+L I
Sbjct: 543 YNARENGQPAT--PVLTAPEGLRELRLSLVQSLQRTLATGLDLLGI 586
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAV 808
+ + VL E R+ R G V + E+L+E RR+ +++KN + EA + V
Sbjct: 383 LAYETVLLEGRQ-MSGRKGLAVSVDEVLEEATRRARAIVEEKNPDH----PDKEEAARMV 437
Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
A G I+++ + F + + L G+T Y+ YA+ R SI R AG
Sbjct: 438 ALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAG 488
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 568 IGDTISRLLEYLGHDVVRLNHVGDWGTQ 595
+GD I+R+L Y G +V+ LN++ D G Q
Sbjct: 128 LGDAIARILAYAGREVLVLNYIDDTGRQ 155
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 34/216 (15%)
Query: 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML- 390
K+ L+++ S N +H+GH R + GDT++RL +LG+ +V D G Q +L
Sbjct: 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLG 87
Query: 391 ----------IAHLQDKFPDYLTKSPPIADL--QAFYKESKKRFDEDEI--FKKRAYQCV 436
I H ++P+ K I DL +AF K K+ F E+ I A +
Sbjct: 88 LSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKM 147
Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 496
+ L + + + K ++ VS R + YD LN TL + +++ E++G
Sbjct: 148 LVLIKQNLEQAKI-KIDSYVSERSY---YDALNATL---------ESLKEHKGIYEQEGK 194
Query: 497 LELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDL 532
+ L +K G+++ + I++ DG TY +D+
Sbjct: 195 IWLASSQK---GDEKDRV---IIREDGRGTYLAADI 224
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 566 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML-----------IAHLQDKFPDYLTKS 614
+ GDT++RL +LG+ +V D G Q +L I H ++P+ K
Sbjct: 53 AVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKG 112
Query: 615 PPIADL--QAFYKESKKRFDEDEI--FKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDF 670
I DL +AF K K+ F E+ I A ++ L + + + K ++ VS R +
Sbjct: 113 EYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKI-KIDSYVSERSY 171
Query: 671 QKIYDRLNVTL 681
YD LN TL
Sbjct: 172 ---YDALNATL 179
>pdb|3GDZ|A Chain A, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|B Chain B, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|C Chain C, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|D Chain D, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
Length = 109
Score = 37.4 bits (85), Expect = 0.050, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
+FGD+Q N A+ K P +A+ + S + L + +K+E+A PG
Sbjct: 38 QFGDYQANGVXAVAKKLGXA-----PRQLAEQVLS--------HLDLNGIANKVEIAGPG 84
Query: 303 FVNVFLSRVYAGEQI 317
F+N+FL + + +
Sbjct: 85 FINIFLDPAFLADNV 99
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
+FGD+Q N A+ K P +A+ + S + L + +K+E A PG
Sbjct: 38 QFGDYQANGVXAVAKKLGXA-----PRQLAEQVLS--------HLDLNGIANKVEIAGPG 84
Query: 107 FVNVFLSRVYAGEQM 121
F+N+FL + + +
Sbjct: 85 FINIFLDPAFLADNV 99
>pdb|2OPX|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From
Escherichia Coli
Length = 479
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 33 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 92
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 93 LAKV 96
+A V
Sbjct: 222 VAMV 225
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 229 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 288
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 289 LAKV 292
+A V
Sbjct: 222 VAMV 225
>pdb|2IMP|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
Coli: The Ternary Complex With Product Bound (L)-Lactate
And Nadh.
pdb|2ILU|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
Coli: The Binary Complex With Nadph
Length = 479
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 33 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 92
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 93 LAKV 96
+A V
Sbjct: 222 VAMV 225
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 229 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 288
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 289 LAKV 292
+A V
Sbjct: 222 VAMV 225
>pdb|2HG2|A Chain A, Structure Of Lactaldehyde Dehydrogenase
Length = 479
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 33 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 92
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 93 LAKV 96
+A V
Sbjct: 222 VAMV 225
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 229 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 288
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 289 LAKV 292
+A V
Sbjct: 222 VAMV 225
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
P K VLV F P+ ++H+GHL++ +GD ++R G++V+ H W F
Sbjct: 29 PGGRGKQYVLVMFPYPS--GDLHMGHLKNYTMGDVLARFRRMQGYEVL---HPMGWDA-F 82
Query: 388 GMLIAHLQDKF 398
G+ + KF
Sbjct: 83 GLPAENAALKF 93
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
P K VLV F P+ ++H+GHL++ +GD ++R G++V+ H W F
Sbjct: 29 PGGRGKQYVLVMFPYPS--GDLHMGHLKNYTMGDVLARFRRMQGYEVL---HPMGWDA-F 82
Query: 388 GMLIAHLQDKF 398
G+ + KF
Sbjct: 83 GLPAENAALKF 93
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 343 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 376
P + +H+GH+R+ IGD I+R LG +V++
Sbjct: 62 PYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQ 95
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
KK + V F P ++ +HVGH R+ I D I+R G++V+
Sbjct: 34 KKFYITVAF--PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL 75
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
KK + V F P ++ +HVGH R+ I D I+R G++V+
Sbjct: 34 KKFYITVAF--PYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL 75
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 342 SPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 390
P + H+G+ R+ I GD + + L +LG+ V ++ D G G L
Sbjct: 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL 97
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 87/215 (40%), Gaps = 32/215 (14%)
Query: 464 IYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDG 523
+ R +L+ G+ + K E LVP L ++D K++ E+ I + +++ +G
Sbjct: 127 FHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLL-DEETAGIIIEVIQGEG 185
Query: 524 GFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGV----------HFRL----------LE 563
G + D + Q I +EK D ++ + ++ G+ HF L L
Sbjct: 186 GVNEASEDFLSKLQEICKEK-DVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLG 244
Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM--LIAHLQDKFPDYLTK-SPPIADL 620
IG ++R +V + G G+ FG L D + K P + ++
Sbjct: 245 GGVPIGAILAR------EEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREV 298
Query: 621 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDY 655
++KE K + ++ K R + L+R DY
Sbjct: 299 GNYFKEKLKELGKGKV-KGRGLMLGLELERECKDY 332
>pdb|3D6N|B Chain B, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 291
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 670 FQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFR-- 727
+++I LN+ L G+ +Q + L+ + K + K L ++YV D+ FR
Sbjct: 105 YKEIVKSLNLRLVNAGDGTHQHPSQGLIDFFTIKEHFGEVKDLRVLYVGDIKHSRVFRSG 164
Query: 728 --LLEECAKKAGILNP 741
LL K G+ P
Sbjct: 165 APLLNMFGAKIGVCGP 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,379,631
Number of Sequences: 62578
Number of extensions: 1364120
Number of successful extensions: 3478
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3439
Number of HSP's gapped (non-prelim): 38
length of query: 1119
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1010
effective length of database: 8,152,335
effective search space: 8233858350
effective search space used: 8233858350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)