BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6783
(1119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VXN4|SYRC_DROME Probable arginine--tRNA ligase, cytoplasmic OS=Drosophila
melanogaster GN=Aats-arg PE=2 SV=1
Length = 665
Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/464 (51%), Positives = 311/464 (67%), Gaps = 40/464 (8%)
Query: 168 LISKAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELG 227
++ K+IAEE G S ++ S+ ++L VF A+ AFPE
Sbjct: 54 ILKKSIAEESTAAGGDVSKPKESS--------------SITEHLESVFRQAIASAFPEFR 99
Query: 228 DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNP 287
D +A N KFGD+QCN+AM L K K+KG K P DIA +EL +
Sbjct: 100 DTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLKEKGINKAPRDIA--------TELKGHC 150
Query: 288 SLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAK 347
+ +I+K+E+A GFVNVFLS+ YA + +++ NGV+PP + KK RVLVDFSSPNIAK
Sbjct: 151 PASPIIEKLEIAGAGFVNVFLSKDYASLALSNLLRNGVKPPEVIKK-RVLVDFSSPNIAK 209
Query: 348 EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 407
+MHVGHLRSTIIG+++ RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP+YL +SPP
Sbjct: 210 QMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLNESPP 269
Query: 408 IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 467
I+DLQ FYKESKKRFDEDE FKKRAY VV+LQ+ P+ KAWE+IC+VSR++FQ IY+R
Sbjct: 270 ISDLQLFYKESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYER 329
Query: 468 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED-RGSIPMTIVKSDGGFT 526
L++++ ERGESFYQ M +V YL KGLLE+D+GR+IMW +D + IP+TIVKSDGGFT
Sbjct: 330 LDISVKERGESFYQSRMLSVVEYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFT 389
Query: 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRL 586
YDTSD+AAIR R+EEE DWI+YV D GQ HF + ++ S +L L H R+
Sbjct: 390 YDTSDMAAIRHRLEEELCDWIIYVVDSGQSTHFNTIFKAA----ERSAILNPLSH---RV 442
Query: 587 NHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 630
+HV QFG+++ KF T+S L E KR
Sbjct: 443 DHV-----QFGVVLGEDGKKFK---TRSGDTVKLSDLLDEGMKR 478
Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/346 (56%), Positives = 246/346 (71%), Gaps = 43/346 (12%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIG+++ RLLE+L HDV+R+NH+GDWGTQFGMLIAHL+D+FP+YL +SPPI+DLQ FY
Sbjct: 218 STIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLNESPPISDLQLFY 277
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
KESKKRFDEDE FKKRAY VV+LQ+ P+ KAWE+IC+VSR++FQ IY+RL++++ ER
Sbjct: 278 KESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYERLDISVKER 337
Query: 685 GESFYQKHMEQLVPYLEKKG--------------------NLSLTKKLG----------- 713
GESFYQ M +V YL KG L++ K G
Sbjct: 338 GESFYQSRMLSVVEYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAA 397
Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
I+YV D GQ HF + + A+++ ILNP R+D V FGVVLGED KK
Sbjct: 398 IRHRLEEELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLSHRVDHVQFGVVLGEDGKK 457
Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
FKTRSGDTVKLS+LLDEG++RSL +L+ + R LTP EL +AQ+++AYGCIKY+DL HN
Sbjct: 458 FKTRSGDTVKLSDLLDEGMKRSLQQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHN 517
Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
R DY+FSFDKML+DRGNTAVYLLY YTRI SIAR +G + + PE
Sbjct: 518 RISDYIFSFDKMLEDRGNTAVYLLYTYTRICSIARNSGEDFTNLPE 563
Score = 230 bits (586), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 147/191 (76%)
Query: 929 GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
G++RSL +L+ + R LTP EL +AQ+++AYGCIKY+DL HNR DY+FSFDKML+DRG
Sbjct: 475 GMKRSLQQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRG 534
Query: 989 NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
NTAVYLLY YTRI SIAR +G + +L + T + L+HEKE+ LAKTLL+++D+L+
Sbjct: 535 NTAVYLLYTYTRICSIARNSGEDFTNLPEILKKTNIVLDHEKEWKLAKTLLKLHDILIKC 594
Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
+++L LH LCE+ +++ T F+EFYD+CYCIEK+ +G I V+ R+LL EATA V+++CF
Sbjct: 595 SKELFLHFLCEFCFEVCTVFTEFYDSCYCIEKNKQGDIIGVNHSRILLCEATAAVLRQCF 654
Query: 1109 DILNIRTVHKM 1119
IL ++ V KM
Sbjct: 655 YILGLKPVSKM 665
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 91/147 (61%), Gaps = 10/147 (6%)
Query: 6 RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
++ S+ ++L VF A+ AFPE D +A N KFGD+QCN+AM L K K+
Sbjct: 74 KESSSITEHLESVFRQAIASAFPEFRDTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLKE 132
Query: 66 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
KG K P DIA +EL + + +I+K+E A GFVNVFLS+ YA + +++
Sbjct: 133 KGINKAPRDIA--------TELKGHCPASPIIEKLEIAGAGFVNVFLSKDYASLALSNLL 184
Query: 126 VNGVQPPTLNKKLRVLVDFSSPNIARK 152
NGV+PP + KK RVLVDFSSPNIA++
Sbjct: 185 RNGVKPPEVIKK-RVLVDFSSPNIAKQ 210
>sp|P37880|SYRC_CRIGR Arginine--tRNA ligase, cytoplasmic OS=Cricetulus griseus GN=RARS
PE=2 SV=1
Length = 661
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/427 (53%), Positives = 302/427 (70%), Gaps = 24/427 (5%)
Query: 194 AKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAM 253
A+K P + +++ L DVF A++ A+P+L + V + + KFGD+QCN AM
Sbjct: 64 AEKRRRPTKNMININSRLQDVFGCAIKAAYPDLDNPPLVVTPSQQP---KFGDYQCNSAM 120
Query: 254 ALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYA 313
+ ++ K K +K NP IA++I T L N + ID++E+A PGF+NV L + +
Sbjct: 121 GISQMLKAKEQKVNPRGIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFV 172
Query: 314 GEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHD 373
EQ+ +++VNG+Q P L + +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+D
Sbjct: 173 SEQLTNLLVNGIQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYD 232
Query: 374 VVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAY 433
V+RLNHVGDWGTQFGMLIAHLQD+FPDYLT SPPI DLQAFYKESKKRFD +E FKKRAY
Sbjct: 233 VLRLNHVGDWGTQFGMLIAHLQDQFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAY 292
Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 493
QCVV+LQ DPD+ KAW +ICDVSR +F KIYD L++TL ERGESFYQ M+ +V E
Sbjct: 293 QCVVSLQSKDPDFIKAWNLICDVSRAEFNKIYDALDITLIERGESFYQDRMKDIVKEFED 352
Query: 494 KGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
KG +++DDGRKI++ SIP+TIVKSDGGFTYDTSDLAAI+QR+ EEKA+ I+YV D
Sbjct: 353 KGYVQVDDGRKIVFVPG-CSIPLTIVKSDGGFTYDTSDLAAIKQRLFEEKANKIIYVVDN 411
Query: 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK 613
GQ VHF+ TI ++++ + V ++ HVG FG+++ + KF +
Sbjct: 412 GQAVHFQ-----TIFA--AAQMIGWYDPKVTQVTHVG-----FGVVLGEDKKKFKTRSGE 459
Query: 614 SPPIADL 620
+ + DL
Sbjct: 460 TVRLVDL 466
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/340 (59%), Positives = 242/340 (71%), Gaps = 41/340 (12%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQD+FPDYLT SPPI DLQAFY
Sbjct: 215 STIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDQFPDYLTVSPPIGDLQAFY 274
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
KESKKRFD +E FKKRAYQCVV+LQ DPD+ KAW +ICDVSR +F KIYD L++TL ER
Sbjct: 275 KESKKRFDTEEEFKKRAYQCVVSLQSKDPDFIKAWNLICDVSRAEFNKIYDALDITLIER 334
Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
GESFYQ M+ +V E KG L++ K G
Sbjct: 335 GESFYQDRMKDIVKEFEDKGYVQVDDGRKIVFVPGCSIPLTIVKSDGGFTYDTSDLAAIK 394
Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
I+YV D GQ VHF+ + A+ G +P T++ VGFGVVLGED+KKFK
Sbjct: 395 QRLFEEKANKIIYVVDNGQAVHFQTIFAAAQMIGWYDPKVTQVTHVGFGVVLGEDKKKFK 454
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+TV+L +LL EGL+RS+DKLK+K R LT EL+ AQ ++AYGCIKYADLSHNR
Sbjct: 455 TRSGETVRLVDLLGEGLKRSMDKLKEKERDKVLTEEELTAAQTSIAYGCIKYADLSHNRL 514
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A ++ E
Sbjct: 515 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANVDEE 554
Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 114/196 (58%), Positives = 148/196 (75%), Gaps = 1/196 (0%)
Query: 925 LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
L G GL+RS+DKLK+K R LT EL+ AQ ++AYGCIKYADLSHNR DY+FSFDKML
Sbjct: 466 LLGEGLKRSMDKLKEKERDKVLTEEELTAAQTSIAYGCIKYADLSHNRLNDYIFSFDKML 525
Query: 985 DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
DDRGNTA YLLYA+TRI SIAR A ++ E L+ AA+ T + L+HEKE+ L + +LR ++
Sbjct: 526 DDRGNTAAYLLYAFTRIRSIARLANVDEEMLQKAARETKIVLDHEKEWKLGRCILRFPEI 585
Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
L + DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+ V+ R+LL EA A V
Sbjct: 586 LQKMLDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAV 645
Query: 1104 MKKCFDILNIRTVHKM 1119
M K FDIL I+ V +M
Sbjct: 646 MAKGFDILGIKPVQRM 661
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 93/149 (62%), Gaps = 11/149 (7%)
Query: 4 PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
P ++ +++ L DVF A++ A+P+L + V + + KFGD+QCN AM + ++
Sbjct: 70 PTKNMININSRLQDVFGCAIKAAYPDLDNPPLVVTPSQQP---KFGDYQCNSAMGISQML 126
Query: 64 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
K K +K NP IA++I T L N + ID++E A PGF+NV L + + EQ+ +
Sbjct: 127 KAKEQKVNPRGIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFVSEQLTN 178
Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
++VNG+Q P L + +V+VDFSSPNIA++
Sbjct: 179 LLVNGIQLPALGENKKVIVDFSSPNIAKE 207
>sp|Q9D0I9|SYRC_MOUSE Arginine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Rars PE=2
SV=2
Length = 660
Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/431 (53%), Positives = 300/431 (69%), Gaps = 27/431 (6%)
Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
P + +++ L +VF A++ A+P+L + V + + KFGD+QCN AM + ++
Sbjct: 69 PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125
Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
K K +K +P +IA++I T L N K IDK+E+A PGF+NV L + + EQ+
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177
Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
++VNGVQ P L K +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G+DV+RLNH
Sbjct: 178 LLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNH 237
Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD DE FKKRAYQCVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLL 297
Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
Q +PD KAW +ICDVSR +F+KIYD L++TL ERGESFYQ M+ +V E KG +++
Sbjct: 298 QSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQV 357
Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
DDGRKI++ S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+YV D GQ +HF
Sbjct: 358 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHF 416
Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
+ TI ++++ + V + HVG FG+++ + KF T+S
Sbjct: 417 Q-----TIFA--AAQMIGWYDPKVTLVTHVG-----FGVVLGEDKKKFK---TRSGETVR 461
Query: 620 LQAFYKESKKR 630
L +E KR
Sbjct: 462 LMDLLEEGLKR 472
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/338 (60%), Positives = 239/338 (70%), Gaps = 41/338 (12%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIG+++SRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
KESKKRFD DE FKKRAYQCVV LQ +PD KAW +ICDVSR +F+KIYD L++TL ER
Sbjct: 274 KESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIER 333
Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
GESFYQ M+ +V E KG L++ K G
Sbjct: 334 GESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393
Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
I+YV D GQ +HF+ + A+ G +P T + VGFGVVLGED+KKFK
Sbjct: 394 QRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGVVLGEDKKKFK 453
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+TV+L +LL+EGL+RS+DKLK+K R LT EL AQ +VAYGCIKYADLSHNR
Sbjct: 454 TRSGETVRLMDLLEEGLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRL 513
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANID 551
Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/192 (58%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 929 GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
GL+RS+DKLK+K R LT EL AQ +VAYGCIKYADLSHNR DY+FSFDKMLDDRG
Sbjct: 469 GLKRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528
Query: 989 NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
NTA YLLYA+TRI SIAR A I+ L+ AA+ T + L+HEKE+ L + +LR ++L +
Sbjct: 529 NTAAYLLYAFTRIRSIARLANIDEAMLQRAARETKIILDHEKEWKLGRCILRFPEILQKI 588
Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+ V+ R+LL EA A VM K
Sbjct: 589 LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 648
Query: 1108 FDILNIRTVHKM 1119
FDIL I+ V +M
Sbjct: 649 FDILGIKPVQRM 660
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 11/149 (7%)
Query: 4 PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
P ++ +++ L +VF A++ A+P+L + V + + KFGD+QCN AM + ++
Sbjct: 69 PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125
Query: 64 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
K K +K +P +IA++I T L N K IDK+E A PGF+NV L + + EQ+
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177
Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
++VNGVQ P L K +V+VDFSSPNIA++
Sbjct: 178 LLVNGVQLPVLGDKEKVIVDFSSPNIAKE 206
>sp|P54136|SYRC_HUMAN Arginine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=RARS PE=1
SV=2
Length = 660
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/440 (52%), Positives = 301/440 (68%), Gaps = 27/440 (6%)
Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
K + N P + +++ L +VF HA++ A+P+L + V + + KFGD+QCN
Sbjct: 60 KSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116
Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
AM + ++ K K +K NP +IA++I T L N + I+K+E+A PGF+NV L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRK 168
Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
+ EQ+ ++VNGVQ P L + +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+
Sbjct: 169 DFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228
Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKK 288
Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
RAYQCVV LQ +PD KAW++ICDVSR++ KIYD L+V+L ERGESFYQ M +V
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDRMNDIVKE 348
Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
E +G +++DDGRKI++ SIP+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407
Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
D GQ VHF+ TI ++++ + V R+ H G FG+++ + KF
Sbjct: 408 VDNGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 453
Query: 611 LTKSPPIADLQAFYKESKKR 630
T+S L E KR
Sbjct: 454 -TRSGETVRLMDLLGEGLKR 472
Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/340 (59%), Positives = 238/340 (70%), Gaps = 41/340 (12%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIG++ISRL E+ G+DV+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 273
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
KESKKRFD +E FKKRAYQCVV LQ +PD KAW++ICDVSR++ KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIER 333
Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
GESFYQ M +V E +G L++ K G
Sbjct: 334 GESFYQDRMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIK 393
Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
I+YV D GQ VHF+ + A+ G +P TR+ GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+TV+L +LL EGL+RS+DKLK+K R LT EL+ AQ +VAYGCIKYADLSHNR
Sbjct: 454 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRL 513
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553
Score = 240 bits (613), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 149/196 (76%), Gaps = 1/196 (0%)
Query: 925 LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
L G GL+RS+DKLK+K R LT EL+ AQ +VAYGCIKYADLSHNR DY+FSFDKML
Sbjct: 465 LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKML 524
Query: 985 DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
DDRGNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR ++
Sbjct: 525 DDRGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584
Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
L + DL LH LC+Y+Y+++TAF+EFYD+CYC+EKD + GKI V+ R+LL EA A V
Sbjct: 585 LQKILDDLFLHTLCDYIYELATAFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644
Query: 1104 MKKCFDILNIRTVHKM 1119
M K FDIL I+ V +M
Sbjct: 645 MAKGFDILGIKPVQRM 660
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)
Query: 2 NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
N P ++ +++ L +VF HA++ A+P+L + V + + KFGD+QCN AM + +
Sbjct: 67 NKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123
Query: 62 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
+ K K +K NP +IA++I T L N + I+K+E A PGF+NV L + + EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175
Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
++VNGVQ P L + +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 206
>sp|Q5RA20|SYRC_PONAB Arginine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=RARS PE=2
SV=1
Length = 660
Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/440 (51%), Positives = 301/440 (68%), Gaps = 27/440 (6%)
Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
K + N P + ++V L +VF HA++ A+P+L + V + + KFGD+QCN
Sbjct: 60 KSLQAERNKPTKNMINVISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCN 116
Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
AM + ++ K K +K NP +IA++I T L N + I+K+E+A PGF+N+ L +
Sbjct: 117 SAMGISQMLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINIHLRK 168
Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
+ EQ+ ++VNGVQ P L + +V+VDFSSPNIAKEMHVGHLRSTIIG++ISRL E+
Sbjct: 169 DFVSEQLTSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFA 228
Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FYKESKKRFD +E FKK
Sbjct: 229 GYDVLRLNHIGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKK 288
Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
RAYQCVV LQ +PD KAW++ICDVSR++ KIYD L+V+L ERGESFYQ M +V
Sbjct: 289 RAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDMMNDIVKE 348
Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
E +G +++DDGRKI++ SIP+TI+KSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSIPLTILKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407
Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
D GQ VHF+ TI ++++ + V R+ H G FG+++ + KF
Sbjct: 408 VDNGQSVHFQ-----TIFA--AAQMIGWYDPKVTRVFHAG-----FGVVLGEDKKKFK-- 453
Query: 611 LTKSPPIADLQAFYKESKKR 630
T+S L E KR
Sbjct: 454 -TRSGETVRLMDLLGEGLKR 472
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/340 (58%), Positives = 238/340 (70%), Gaps = 41/340 (12%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIG++ISRL E+ G+DV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ FY
Sbjct: 214 STIIGESISRLFEFAGYDVLRLNHIGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFY 273
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
KESKKRFD +E FKKRAYQCVV LQ +PD KAW++ICDVSR++ KIYD L+V+L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQGKNPDITKAWKLICDVSRQELNKIYDALDVSLIER 333
Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
GESFYQ M +V E +G L++ K G
Sbjct: 334 GESFYQDMMNDIVKEFEDRGFVQVDDGRKIVFVPGCSIPLTILKSDGGYTYDTSDLAAIK 393
Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
I+YV D GQ VHF+ + A+ G +P TR+ GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSVHFQTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFK 453
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+TV+L +LL EGL+RS+DKLK+K R LT EL+ AQ ++AYGC+KYADLSHNR
Sbjct: 454 TRSGETVRLMDLLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCVKYADLSHNRL 513
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
DY+FSFDKMLDD+GNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDKGNTAAYLLYAFTRIRSIARLANIDEE 553
Score = 236 bits (602), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 114/196 (58%), Positives = 148/196 (75%), Gaps = 1/196 (0%)
Query: 925 LRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKML 984
L G GL+RS+DKLK+K R LT EL+ AQ ++AYGC+KYADLSHNR DY+FSFDKML
Sbjct: 465 LLGEGLKRSMDKLKEKERDKVLTAEELNAAQTSIAYGCVKYADLSHNRLNDYIFSFDKML 524
Query: 985 DDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDV 1044
DD+GNTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR ++
Sbjct: 525 DDKGNTAAYLLYAFTRIRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEI 584
Query: 1045 LMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKV 1103
L + DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GKI V+ R+LL EA A V
Sbjct: 585 LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAV 644
Query: 1104 MKKCFDILNIRTVHKM 1119
M K FDIL I+ V +M
Sbjct: 645 MAKGFDILGIKPVQRM 660
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 11/151 (7%)
Query: 2 NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
N P ++ ++V L +VF HA++ A+P+L + V + + KFGD+QCN AM + +
Sbjct: 67 NKPTKNMINVISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123
Query: 62 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
+ K K +K NP +IA++I T L N + I+K+E A PGF+N+ L + + EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINIHLRKDFVSEQL 175
Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
++VNGVQ P L + +V+VDFSSPNIA++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKE 206
>sp|Q6P1S4|SYRC_XENTR Arginine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=rars
PE=2 SV=1
Length = 660
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/404 (51%), Positives = 294/404 (72%), Gaps = 26/404 (6%)
Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
+++ + ++F A+ A+PEL + +V + + KFGD+QCN AMA+ ++ K +
Sbjct: 74 ININAQIQEIFGTAIGAAYPELQNAPLAVTPSQQP---KFGDYQCNSAMAITQMLKAMNQ 130
Query: 265 KKNPFDIAQSIA-SVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323
K +P +IA I ++ T+EL ++K+++A PGF+NV L + + +QI ++VN
Sbjct: 131 KVSPREIADKIVKNIPTNEL---------VEKVDIAGPGFINVHLHKDFTSKQISKLLVN 181
Query: 324 GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
GVQPP + ++ +V+VDFSSPNIAKEMHVGHLRST+IGD+I RL E++GHDV+RLNH+GDW
Sbjct: 182 GVQPPVIWERKKVVVDFSSPNIAKEMHVGHLRSTVIGDSICRLFEFVGHDVLRLNHLGDW 241
Query: 384 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
GTQFGMLIAHLQDKFPDYLT SPPI DLQ+FYKESKKRFDEDE FKKRAYQCVV LQ
Sbjct: 242 GTQFGMLIAHLQDKFPDYLTVSPPIGDLQSFYKESKKRFDEDEEFKKRAYQCVVQLQNKT 301
Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
P++ +AW +ICDVSR++FQKIYD L++++ +RGESFYQ M +V E+KGL+++D+GR
Sbjct: 302 PNFIQAWNLICDVSRKEFQKIYDCLDISIIDRGESFYQDRMIGVVKEFEEKGLVQVDEGR 361
Query: 504 KIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
K+++ S+P+TIVKSDGGFTYDTSDLAA++QR++EEKAD I+YV D GQ +H + +
Sbjct: 362 KVVFPPG-CSVPLTIVKSDGGFTYDTSDLAALKQRLQEEKADMIIYVIDSGQAIHMQNVF 420
Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
+ R++ + V R+ H G FG+++ + KF
Sbjct: 421 SA-------GRMIGWYDPKVTRIEHAG-----FGVVLGEDKKKF 452
Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/341 (59%), Positives = 242/341 (70%), Gaps = 41/341 (12%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
ST+IGD+I RL E++GHDV+RLNH+GDWGTQFGMLIAHLQDKFPDYLT SPPI DLQ+FY
Sbjct: 214 STVIGDSICRLFEFVGHDVLRLNHLGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQSFY 273
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
KESKKRFDEDE FKKRAYQCVV LQ P++ +AW +ICDVSR++FQKIYD L++++ +R
Sbjct: 274 KESKKRFDEDEEFKKRAYQCVVQLQNKTPNFIQAWNLICDVSRKEFQKIYDCLDISIIDR 333
Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
GESFYQ M +V E+KG L++ K G
Sbjct: 334 GESFYQDRMIGVVKEFEEKGLVQVDEGRKVVFPPGCSVPLTIVKSDGGFTYDTSDLAALK 393
Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
I+YV D GQ +H + + + G +P TR++ GFGVVLGED+KKFK
Sbjct: 394 QRLQEEKADMIIYVIDSGQAIHMQNVFSAGRMIGWYDPKVTRIEHAGFGVVLGEDKKKFK 453
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSGDTV+L +LLDEGL+RS++KLKDK R LT EL AQ +VA+GCIKYADLSHNR
Sbjct: 454 TRSGDTVRLIDLLDEGLKRSMEKLKDKGRDKVLTAEELLAAQTSVAFGCIKYADLSHNRM 513
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
DY+FSFDKMLDDRGNTA YLLYAYTRI SIAR A I+ ED
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAYTRIRSIARLANISDED 554
Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/192 (63%), Positives = 147/192 (76%), Gaps = 1/192 (0%)
Query: 929 GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
GL+RS++KLKDK R LT EL AQ +VA+GCIKYADLSHNR DY+FSFDKMLDDRG
Sbjct: 469 GLKRSMEKLKDKGRDKVLTAEELLAAQTSVAFGCIKYADLSHNRMNDYIFSFDKMLDDRG 528
Query: 989 NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
NTA YLLYAYTRI SIAR A I+ EDL AA+ T + LEHEKE+ L+K +LR ++L +
Sbjct: 529 NTAAYLLYAYTRIRSIARLANISDEDLHKAAKETEIILEHEKEWKLSKCILRFPEILQKI 588
Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
DL LH LC+YLY+++T F+EFYDNCYC+EKD + G+I V+ RLLL +ATA VM K
Sbjct: 589 LDDLLLHTLCDYLYELATTFTEFYDNCYCVEKDRQTGQIVKVNMSRLLLCDATAAVMAKG 648
Query: 1108 FDILNIRTVHKM 1119
FDIL I+ V KM
Sbjct: 649 FDILGIKPVQKM 660
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 93/148 (62%), Gaps = 13/148 (8%)
Query: 6 RDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
+ +++ + ++F A+ A+PEL + +V + + KFGD+QCN AMA+ ++ K
Sbjct: 71 KSMININAQIQEIFGTAIGAAYPELQNAPLAVTPSQQP---KFGDYQCNSAMAITQMLKA 127
Query: 66 KGEKKNPFDIAQSIA-SVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI 124
+K +P +IA I ++ T+EL ++K++ A PGF+NV L + + +Q+ +
Sbjct: 128 MNQKVSPREIADKIVKNIPTNEL---------VEKVDIAGPGFINVHLHKDFTSKQISKL 178
Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
+VNGVQPP + ++ +V+VDFSSPNIA++
Sbjct: 179 LVNGVQPPVIWERKKVVVDFSSPNIAKE 206
>sp|P40329|SYRC_RAT Arginine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Rars
PE=1 SV=2
Length = 660
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/431 (51%), Positives = 300/431 (69%), Gaps = 27/431 (6%)
Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 259
P + +++ L ++F A++ A+P+L + V + + KFGD+QCN AM + ++
Sbjct: 69 PTKNMININSRLQELFGCAIKAAYPDLENPPLVVTPSQQP---KFGDYQCNSAMGISQML 125
Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
K K +K +P +IA++I T L N + ID++E+A PGF+NV L + + EQ+ +
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFVSEQLTN 177
Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
++VNGVQ P L + +V+VDFSSPNIAKEMHVGHLRSTIIG+++SRL E+ G++V+RLNH
Sbjct: 178 LLVNGVQLPVLGENEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYNVLRLNH 237
Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
VGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKKRAY+CVV L
Sbjct: 238 VGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKKRAYECVVLL 297
Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
Q +PD KAW +ICDVSR +F KIYD L++TL ERGESFYQ M+ +V E KG +++
Sbjct: 298 QSKNPDIMKAWNLICDVSREEFNKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQV 357
Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
DDGRKI++ S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKA+ I+YV D GQ HF
Sbjct: 358 DDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQATHF 416
Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
+ T+ ++++ + V R+ HVG FG+++ + KF T+S
Sbjct: 417 Q-----TVFA--AAQMIGWYDPKVTRVAHVG-----FGVVLGEDKKKFK---TRSGETVR 461
Query: 620 LQAFYKESKKR 630
L +E +R
Sbjct: 462 LMDLLEEGLRR 472
Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/340 (60%), Positives = 239/340 (70%), Gaps = 41/340 (12%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIG+++SRL E+ G++V+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMSRLFEFAGYNVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
KESKKRFD +E FKKRAY+CVV LQ +PD KAW +ICDVSR +F KIYD L++TL ER
Sbjct: 274 KESKKRFDTEEEFKKRAYECVVLLQSKNPDIMKAWNLICDVSREEFNKIYDALDITLIER 333
Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
GESFYQ M+ +V E KG L++ K G
Sbjct: 334 GESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393
Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
I+YV D GQ HF+ + A+ G +P TR+ VGFGVVLGED+KKFK
Sbjct: 394 QRLFEEKANKIIYVVDNGQATHFQTVFAAAQMIGWYDPKVTRVAHVGFGVVLGEDKKKFK 453
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+TV+L +LL+EGLRRS+DKLK+K R LT EL AQ +VAYGCIKYADLSHNR
Sbjct: 454 TRSGETVRLMDLLEEGLRRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRL 513
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
DYVFSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553
Score = 237 bits (604), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/192 (60%), Positives = 145/192 (75%), Gaps = 1/192 (0%)
Query: 929 GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
GLRRS+DKLK+K R LT EL AQ +VAYGCIKYADLSHNR DYVFSFDKMLDDRG
Sbjct: 469 GLRRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYVFSFDKMLDDRG 528
Query: 989 NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
NTA YLLYA+TRI SIAR A I+ E L+ AA+ T + L+HEKE+ L + +LR ++L +
Sbjct: 529 NTAAYLLYAFTRIRSIARLANIDEEMLQRAARETKIILDHEKEWKLGRCILRFPEILQKI 588
Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + GK+ V+ R+LL EA A VM K
Sbjct: 589 LDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKG 648
Query: 1108 FDILNIRTVHKM 1119
FDIL I+ V +M
Sbjct: 649 FDILGIKPVQRM 660
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 94/149 (63%), Gaps = 11/149 (7%)
Query: 4 PVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
P ++ +++ L ++F A++ A+P+L + V + + KFGD+QCN AM + ++
Sbjct: 69 PTKNMININSRLQELFGCAIKAAYPDLENPPLVVTPSQQP---KFGDYQCNSAMGISQML 125
Query: 64 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
K K +K +P +IA++I T L N + ID++E A PGF+NV L + + EQ+ +
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFVSEQLTN 177
Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
++VNGVQ P L + +V+VDFSSPNIA++
Sbjct: 178 LLVNGVQLPVLGENEKVIVDFSSPNIAKE 206
>sp|A7YW98|SYRC_BOVIN Arginine--tRNA ligase, cytoplasmic OS=Bos taurus GN=RARS PE=2 SV=1
Length = 660
Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/440 (50%), Positives = 304/440 (69%), Gaps = 27/440 (6%)
Query: 191 KGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCN 250
K + N P +++ L +VF A++ A+P L + V + + KFGD+QCN
Sbjct: 60 KSLQAERNKPTKTMININSCLEEVFGCAIKAAYPVLENPPLIVTPSQQP---KFGDYQCN 116
Query: 251 DAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR 310
AM +C++ K K +K NP +IA++I L N + I+K+E+A PGF+N+ L +
Sbjct: 117 SAMGICQMLKTKEQKVNPREIAENI----VKHLPDN----EYIEKVEIAGPGFINIHLRK 168
Query: 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYL 370
+ +Q+ +++VNGV+ P++ + +V+VDFSSPNIAKEMHVGHLRSTIIG+++ RL E+
Sbjct: 169 GFVSQQLTNLLVNGVKIPSIGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFA 228
Query: 371 GHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKK 430
G++V+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFYKESKKRFD +E FKK
Sbjct: 229 GYNVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDTEEEFKK 288
Query: 431 RAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
RAYQCVV LQ +PD KAW++ICDVSR++F KIY+ L+++L ERGESFYQ M +V
Sbjct: 289 RAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNKIYEALDISLIERGESFYQDRMHDIVKE 348
Query: 491 LEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYV 550
E +G +++DDGRKI++ S+P+TIVKSDGG+TYDTSDLAAI+QR+ EEKAD I+YV
Sbjct: 349 FEDRGFVQVDDGRKIVFVPG-CSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYV 407
Query: 551 TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
D GQ +HF+ T+ G ++++ + V R++H G FG+++ + KF
Sbjct: 408 VDNGQSLHFQ-----TVFG--AAQMIGWYDPAVTRVSHAG-----FGVVLGEDKKKFK-- 453
Query: 611 LTKSPPIADLQAFYKESKKR 630
T+S L +E KR
Sbjct: 454 -TRSGETVRLIDLLEEGLKR 472
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/340 (58%), Positives = 239/340 (70%), Gaps = 41/340 (12%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIG+++ RL E+ G++V+RLNHVGDWGTQFGMLIAHLQDKFPDYLT SPPI DLQAFY
Sbjct: 214 STIIGESMCRLFEFAGYNVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFY 273
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
KESKKRFD +E FKKRAYQCVV LQ +PD KAW++ICDVSR++F KIY+ L+++L ER
Sbjct: 274 KESKKRFDTEEEFKKRAYQCVVLLQSKNPDIIKAWKLICDVSRQEFNKIYEALDISLIER 333
Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
GESFYQ M +V E +G L++ K G
Sbjct: 334 GESFYQDRMHDIVKEFEDRGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIK 393
Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
I+YV D GQ +HF+ + A+ G +P TR+ GFGVVLGED+KKFK
Sbjct: 394 QRLFEEKADMIIYVVDNGQSLHFQTVFGAAQMIGWYDPAVTRVSHAGFGVVLGEDKKKFK 453
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+TV+L +LL+EGL+RS+DKLK+K R LT EL AQ +VAYGCIKYADLSHNR
Sbjct: 454 TRSGETVRLIDLLEEGLKRSMDKLKEKERDKVLTTEELKAAQTSVAYGCIKYADLSHNRL 513
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
DY+FSFDKMLDDRGNTA YLLYA+TRI SIAR A I+ E
Sbjct: 514 NDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEE 553
Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/192 (59%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Query: 929 GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
GL+RS+DKLK+K R LT EL AQ +VAYGCIKYADLSHNR DY+FSFDKMLDDRG
Sbjct: 469 GLKRSMDKLKEKERDKVLTTEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRG 528
Query: 989 NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
NTA YLLYA+TRI SIAR A I+ E LR AA T + L+HEKE+ L + +LR +VL +
Sbjct: 529 NTAAYLLYAFTRIRSIARLANIDEEMLRKAAHETEIILDHEKEWKLGRCILRFPEVLQKI 588
Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
DL LH LC+Y+Y+++T F+EFYD+CYC+EKD + G++ V+ R+LL EA A VM K
Sbjct: 589 LDDLLLHTLCDYIYELATTFTEFYDSCYCVEKDRQSGEVLKVNMWRMLLCEAVAAVMAKG 648
Query: 1108 FDILNIRTVHKM 1119
FDIL I+ V +M
Sbjct: 649 FDILGIKPVQRM 660
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 94/151 (62%), Gaps = 11/151 (7%)
Query: 2 NVPVRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
N P + +++ L +VF A++ A+P L + V + + KFGD+QCN AM +C+
Sbjct: 67 NKPTKTMININSCLEEVFGCAIKAAYPVLENPPLIVTPSQQP---KFGDYQCNSAMGICQ 123
Query: 62 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM 121
+ K K +K NP +IA++I L N + I+K+E A PGF+N+ L + + +Q+
Sbjct: 124 MLKTKEQKVNPREIAENI----VKHLPDN----EYIEKVEIAGPGFINIHLRKGFVSQQL 175
Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
+++VNGV+ P++ + +V+VDFSSPNIA++
Sbjct: 176 TNLLVNGVKIPSIGENKKVIVDFSSPNIAKE 206
>sp|Q5ZM11|SYRC_CHICK Arginine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=RARS PE=2
SV=1
Length = 661
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/431 (50%), Positives = 298/431 (69%), Gaps = 28/431 (6%)
Query: 201 VSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF- 259
V +++ L ++F A+Q A+PEL + V + + KFGD+QCN AM + +I
Sbjct: 70 VKSMININSRLQEIFGAAIQAAYPELENPPLVVTPSQQP---KFGDYQCNSAMGITQILL 126
Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
K K +K +P +IA+ I T + N + I+K+E+A PGF+NV L + + +Q+
Sbjct: 127 KTKEQKVSPREIAEKI----TKHIPAN----ECIEKVEIAGPGFINVHLRKDFVSKQLSS 178
Query: 320 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
++VNGVQPP + K+ +V++DFSSPNIAKEMHVGHLRSTIIG+++ RL E+ G+DV+RLNH
Sbjct: 179 LLVNGVQPPAIGKRKKVILDFSSPNIAKEMHVGHLRSTIIGESMCRLFEFAGYDVLRLNH 238
Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
+GDWGTQFGMLIAHLQD+FPDYLT SPPI DLQAFYKESK+RFD +E FKKRAYQCVV L
Sbjct: 239 LGDWGTQFGMLIAHLQDRFPDYLTVSPPIGDLQAFYKESKRRFDTEEEFKKRAYQCVVLL 298
Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
Q DPD+ KAWE+ICDVSR++FQKIY+ L+VTLTERGESFYQ M+ +V E KG +++
Sbjct: 299 QSKDPDFIKAWELICDVSRKEFQKIYNCLDVTLTERGESFYQDMMKDIVKEFEDKGFVQV 358
Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
DDGRKI++ S+P+TI+KSDGG+TYDTSDLAA+R R+ EEK D ++YV D GQ VH
Sbjct: 359 DDGRKIVFVPGF-SVPLTIMKSDGGYTYDTSDLAALRHRLLEEKGDILIYVVDSGQSVHL 417
Query: 560 RLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 619
+ + + +++ + V R+ H FG+++ + KF T+S
Sbjct: 418 QTVFAA-------GQMIGWYDPKVTRITHAA-----FGVVLGEDKKKFK---TRSGDTVR 462
Query: 620 LQAFYKESKKR 630
L +E KR
Sbjct: 463 LMDLLEEGLKR 473
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/338 (59%), Positives = 240/338 (71%), Gaps = 41/338 (12%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIG+++ RL E+ G+DV+RLNH+GDWGTQFGMLIAHLQD+FPDYLT SPPI DLQAFY
Sbjct: 215 STIIGESMCRLFEFAGYDVLRLNHLGDWGTQFGMLIAHLQDRFPDYLTVSPPIGDLQAFY 274
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
KESK+RFD +E FKKRAYQCVV LQ DPD+ KAWE+ICDVSR++FQKIY+ L+VTLTER
Sbjct: 275 KESKRRFDTEEEFKKRAYQCVVLLQSKDPDFIKAWELICDVSRKEFQKIYNCLDVTLTER 334
Query: 685 GESFYQKHMEQLVPYLEKKG------------------NLSLTKKLG------------- 713
GESFYQ M+ +V E KG L++ K G
Sbjct: 335 GESFYQDMMKDIVKEFEDKGFVQVDDGRKIVFVPGFSVPLTIMKSDGGYTYDTSDLAALR 394
Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
++YV D GQ VH + + + G +P TR+ FGVVLGED+KKFK
Sbjct: 395 HRLLEEKGDILIYVVDSGQSVHLQTVFAAGQMIGWYDPKVTRITHAAFGVVLGEDKKKFK 454
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSGDTV+L +LL+EGL+R++DKLKDK R LTP EL AQ +VA+GCIKYADLSHNR
Sbjct: 455 TRSGDTVRLMDLLEEGLKRAMDKLKDKERDKVLTPEELKAAQMSVAFGCIKYADLSHNRL 514
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
DYVFSFDKMLDDRGNTA YLLYA+TRI +IAR A I+
Sbjct: 515 NDYVFSFDKMLDDRGNTAAYLLYAFTRIRAIARLANID 552
Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/192 (61%), Positives = 146/192 (76%), Gaps = 1/192 (0%)
Query: 929 GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
GL+R++DKLKDK R LTP EL AQ +VA+GCIKYADLSHNR DYVFSFDKMLDDRG
Sbjct: 470 GLKRAMDKLKDKERDKVLTPEELKAAQMSVAFGCIKYADLSHNRLNDYVFSFDKMLDDRG 529
Query: 989 NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
NTA YLLYA+TRI +IAR A I+ LR AA+ + L+HEKE+ L K +LR ++L +
Sbjct: 530 NTAAYLLYAFTRIRAIARLANIDEGMLRKAAREEVIVLDHEKEWKLGKCILRFPEILQKI 589
Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE-GKIKTVHTGRLLLAEATAKVMKKC 1107
DL LH LC+YLY+++T F+EFYDNCYC+EKD + G+I V+T RLLL EATA +M K
Sbjct: 590 LDDLLLHTLCDYLYELATTFTEFYDNCYCVEKDRQSGQIMKVNTWRLLLCEATATIMAKG 649
Query: 1108 FDILNIRTVHKM 1119
FDIL I+ V +M
Sbjct: 650 FDILGIKPVERM 661
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 93/149 (62%), Gaps = 12/149 (8%)
Query: 5 VRDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF- 63
V+ +++ L ++F A+Q A+PEL + V + + KFGD+QCN AM + +I
Sbjct: 70 VKSMININSRLQEIFGAAIQAAYPELENPPLVVTPSQQP---KFGDYQCNSAMGITQILL 126
Query: 64 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKD 123
K K +K +P +IA+ I T + N + I+K+E A PGF+NV L + + +Q+
Sbjct: 127 KTKEQKVSPREIAEKI----TKHIPAN----ECIEKVEIAGPGFINVHLRKDFVSKQLSS 178
Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
++VNGVQPP + K+ +V++DFSSPNIA++
Sbjct: 179 LLVNGVQPPAIGKRKKVILDFSSPNIAKE 207
>sp|Q19825|SYRC_CAEEL Probable arginine--tRNA ligase, cytoplasmic OS=Caenorhabditis
elegans GN=rrt-1 PE=2 SV=2
Length = 713
Score = 363 bits (932), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 218/475 (45%), Positives = 283/475 (59%), Gaps = 46/475 (9%)
Query: 177 EKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDY-------LSDVFTHAVQVAFPELGDK 229
EKK + AKK+ D ++V DY L +F A++ AFP L D
Sbjct: 97 EKKAKKDGKTGGAPPKQAKKV-----DYVTVEDYGSSIFGRLQSLFKKAIEDAFPGL-DV 150
Query: 230 TASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSL 289
+A T +FGD+QCN AM + K K P D+A+ I A P+
Sbjct: 151 PLLLAETPNP---QFGDYQCNSAMPIAAKLKANKINKRPGDVAKEIQ-------AKLPTK 200
Query: 290 AKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEM 349
++KI+V GF+N+FL+ Y QI + GV+ P L +K RVLVDFSSPNIAKEM
Sbjct: 201 IDFVEKIDVMPAGFINIFLNTDYLRRQISLLASEGVKLPKLTRK-RVLVDFSSPNIAKEM 259
Query: 350 HVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 409
HVGHLRSTIIGD+I RL E +G DV+R+NH+GDWGTQFGMLIAHL D+FPD+L K P I+
Sbjct: 260 HVGHLRSTIIGDSICRLFEAVGFDVLRVNHIGDWGTQFGMLIAHLYDRFPDFLKKLPDIS 319
Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
DLQAFYKESKKRFDEDE FKKRAY+ VV LQ D D KAW ICDVS++ Q +Y+ L+
Sbjct: 320 DLQAFYKESKKRFDEDEQFKKRAYEYVVKLQSHDGDIVKAWNTICDVSKKYNQIVYNYLD 379
Query: 470 VTLTERGESFYQKHMEQLVPYLE--KKGLLELDDGRKIMW--GEDRGSIPMTIVKSDGGF 525
+ + + GESFYQ M +LV +++ K +L +DGR+IM+ G D IP+T+VKSDGGF
Sbjct: 380 IKIKDVGESFYQDKMIELVKWVKTNKPDMLREEDGRQIMFPTGCD---IPLTVVKSDGGF 436
Query: 526 TYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVR 585
TYDTSDLAA++ R+ EEK DW +YV D GQ +H + + R + + R
Sbjct: 437 TYDTSDLAALKYRMLEEKCDWNIYVVDSGQSLHLETVYAA-------GRDFGWYDESIQR 489
Query: 586 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKR 640
+ HV FG+++ + KF T+S L E KR E I K R
Sbjct: 490 VEHVA-----FGLVLGDDKKKFK---TRSGETVRLLDLLSEGVKRATEKLIEKGR 536
Score = 326 bits (835), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 170/333 (51%), Positives = 220/333 (66%), Gaps = 43/333 (12%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIGD+I RL E +G DV+R+NH+GDWGTQFGMLIAHL D+FPD+L K P I+DLQAFY
Sbjct: 266 STIIGDSICRLFEAVGFDVLRVNHIGDWGTQFGMLIAHLYDRFPDFLKKLPDISDLQAFY 325
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
KESKKRFDEDE FKKRAY+ VV LQ D D KAW ICDVS++ Q +Y+ L++ + +
Sbjct: 326 KESKKRFDEDEQFKKRAYEYVVKLQSHDGDIVKAWNTICDVSKKYNQIVYNYLDIKIKDV 385
Query: 685 GESFYQKHMEQLVPYL---------EKKGN-----------LSLTKKLG----------- 713
GESFYQ M +LV ++ E+ G L++ K G
Sbjct: 386 GESFYQDKMIELVKWVKTNKPDMLREEDGRQIMFPTGCDIPLTVVKSDGGFTYDTSDLAA 445
Query: 714 ------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
+YV D GQ +H + + G + + R++ V FG+VLG+D+KK
Sbjct: 446 LKYRMLEEKCDWNIYVVDSGQSLHLETVYAAGRDFGWYDESIQRVEHVAFGLVLGDDKKK 505
Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
FKTRSG+TV+L +LL EG++R+ +KL +K R T ++ +L A+ AVA+GC+KYADLSH
Sbjct: 506 FKTRSGETVRLLDLLSEGVKRATEKLIEKGRETAMSEEQLVAARDAVAFGCVKYADLSHT 565
Query: 822 RNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854
R DYVFSFD+ML+DRGNTAVYLLYAYTRI SI
Sbjct: 566 RTQDYVFSFDRMLEDRGNTAVYLLYAYTRIQSI 598
Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 133/192 (69%), Gaps = 2/192 (1%)
Query: 929 GLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
G++R+ +KL +K R T ++ +L A+ AVA+GC+KYADLSH R DYVFSFD+ML+DRG
Sbjct: 523 GVKRATEKLIEKGRETAMSEEQLVAARDAVAFGCVKYADLSHTRTQDYVFSFDRMLEDRG 582
Query: 989 NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTP-VSLEHEKEFALAKTLLRMNDVLML 1047
NTAVYLLYAYTRI SI + + DL STP + L+H EF LAK LL+++D ++L
Sbjct: 583 NTAVYLLYAYTRIQSIFEKDEVKNVDLVKYIASTPTLPLDHPGEFKLAKQLLKLSDCVLL 642
Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
V L LH +C+Y+Y ++T F +FY+ CY IE + EG+ VH RL L + T KVM C
Sbjct: 643 VLDSLMLHQMCDYVYQLATLFHDFYNECYVIE-NKEGEKPFVHMHRLALCDVTRKVMSTC 701
Query: 1108 FDILNIRTVHKM 1119
F IL +R V+KM
Sbjct: 702 FKILGLREVNKM 713
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 19/153 (12%)
Query: 7 DRMSVRDY-------LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL 59
D ++V DY L +F A++ AFP L D +A T +FGD+QCN AM +
Sbjct: 118 DYVTVEDYGSSIFGRLQSLFKKAIEDAFPGL-DVPLLLAETPNP---QFGDYQCNSAMPI 173
Query: 60 CKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGE 119
K K P D+A+ I A P+ ++KI+ GF+N+FL+ Y
Sbjct: 174 AAKLKANKINKRPGDVAKEIQ-------AKLPTKIDFVEKIDVMPAGFINIFLNTDYLRR 226
Query: 120 QMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
Q+ + GV+ P L +K RVLVDFSSPNIA++
Sbjct: 227 QISLLASEGVKLPKLTRK-RVLVDFSSPNIAKE 258
>sp|B1XPX8|SYR_SYNP2 Arginine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27264 / PCC
7002 / PR-6) GN=argS PE=3 SV=1
Length = 585
Score = 312 bits (799), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/328 (50%), Positives = 224/328 (68%), Gaps = 27/328 (8%)
Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEVAKP 301
KFGD+Q N A++L KI K KNP +IAQSI + ++ NP+ +A P
Sbjct: 38 KFGDYQSNVALSLTKILK-----KNPREIAQSIIEALDIADTCENPT---------IAGP 83
Query: 302 GFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
GF+N L Y +K++ + ++P +K V+VDFSSPNIAKEMHVGHLRSTI
Sbjct: 84 GFINFSLKPSYLATLLKEVQQSDRLAIEPAENPQK--VIVDFSSPNIAKEMHVGHLRSTI 141
Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYK 416
IGD+I+R+LE+ G DV+RLNHVGDWGTQFGMLI +L++ +PD LTK+ I DL AFYK
Sbjct: 142 IGDSIARILEFRGQDVLRLNHVGDWGTQFGMLITYLKEVYPDALTKADALDIGDLVAFYK 201
Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 476
++K RFDEDE FK+ + VV LQ D + +KAW+++C+ SRR+FQKIYD L++ LTERG
Sbjct: 202 KAKVRFDEDEAFKEASRNQVVKLQSGDEESQKAWQLLCEQSRREFQKIYDILDIKLTERG 261
Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSD 531
ESFY ++ ++ L++ GLLE D G + ++ E D +P+ + KSDGGF Y T+D
Sbjct: 262 ESFYNPYLADVLTALDEVGLLEEDAGAQCVFLEGFKNKDGDRLPLIVQKSDGGFNYATTD 321
Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHF 559
LAAIR RI+E++A I+YVTD GQ HF
Sbjct: 322 LAAIRYRIKEDQAKRIIYVTDSGQAGHF 349
Score = 284 bits (727), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/364 (43%), Positives = 215/364 (59%), Gaps = 56/364 (15%)
Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP- 616
H R STIIGD+I+R+LE+ G DV+RLNHVGDWGTQFGMLI +L++ +PD LTK+
Sbjct: 136 HLR----STIIGDSIARILEFRGQDVLRLNHVGDWGTQFGMLITYLKEVYPDALTKADAL 191
Query: 617 -IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
I DL AFYK++K RFDEDE FK+ + VV LQ D + +KAW+++C+ SRR+FQKIYD
Sbjct: 192 DIGDLVAFYKKAKVRFDEDEAFKEASRNQVVKLQSGDEESQKAWQLLCEQSRREFQKIYD 251
Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNLS------------------------LTKK 711
L++ LTERGESFY ++ ++ L++ G L + K
Sbjct: 252 ILDIKLTERGESFYNPYLADVLTALDEVGLLEEDAGAQCVFLEGFKNKDGDRLPLIVQKS 311
Query: 712 LG-----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
G I+YVTD GQ HF + + A++AG L P+ +
Sbjct: 312 DGGFNYATTDLAAIRYRIKEDQAKRIIYVTDSGQAGHFAQVFQVAERAGFL-PDDVEVVH 370
Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQ 806
V FG+V GED KK KTR+GDT+KL +LLDE + RS L+ + E T + + Q
Sbjct: 371 VPFGLVQGEDGKKLKTRAGDTIKLKDLLDEAVNRSRADLEKRLAEDERQETADFIEKVSQ 430
Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
V G +KYADLS NR +Y+FSFDKML +GNTA Y+LYAY R+ ++R GI+ P
Sbjct: 431 VVGIGAVKYADLSQNRTSNYIFSFDKMLALQGNTAPYMLYAYVRVQGVSRQGGIDLSTLP 490
Query: 867 EPDP 870
P
Sbjct: 491 TDTP 494
Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 8/169 (4%)
Query: 951 LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
+ + Q V G +KYADLS NR +Y+FSFDKML +GNTA Y+LYAY R+ ++R GI
Sbjct: 425 IEKVSQVVGIGAVKYADLSQNRTSNYIFSFDKMLALQGNTAPYMLYAYVRVQGVSRQGGI 484
Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
DL TP+ LE E LAK LL++++VLM V +DL + LCEYLYD+S F++
Sbjct: 485 ---DLSTLPTDTPIILEEAAELTLAKHLLQLSEVLMSVEQDLMPNRLCEYLYDLSRKFNQ 541
Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
FY+ C ++ + + +I RL+LA+ TA+ +K +L I + +M
Sbjct: 542 FYEACPILKAEGDRRI-----SRLILADTTARTLKLGLSLLGIEVLDRM 585
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 20/110 (18%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEAAKP 105
KFGD+Q N A++L KI KKNP +IAQSI + ++ NP++ A P
Sbjct: 38 KFGDYQSNVALSLTKIL-----KKNPREIAQSIIEALDIADTCENPTI---------AGP 83
Query: 106 GFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
GF+N L Y +K++ + ++P +K V+VDFSSPNIA++
Sbjct: 84 GFINFSLKPSYLATLLKEVQQSDRLAIEPAENPQK--VIVDFSSPNIAKE 131
>sp|B0JLI8|SYR_MICAN Arginine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843)
GN=argS PE=3 SV=1
Length = 585
Score = 310 bits (794), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 160/335 (47%), Positives = 224/335 (66%), Gaps = 25/335 (7%)
Query: 233 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 292
VA++N + FGD+QCN +++L K K K P ++A + L N + +
Sbjct: 32 VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74
Query: 293 IDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMHV 351
E+A PGF+N+ L Y Q+KD+I N + T N +++VDFSSPNIAKEMHV
Sbjct: 75 CQTPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKEMHV 134
Query: 352 GHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IA 409
GHLRSTIIGD I+R+LE+ H V+RLNHVGDWGTQFGMLI +LQ+ +P LT++ +
Sbjct: 135 GHLRSTIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLG 194
Query: 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 469
DL +FYK++K RFDEDE FK+ A Q VV LQ DP ++AW+++C SRR+FQKIYD L+
Sbjct: 195 DLVSFYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILD 254
Query: 470 VTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGG 524
+ LTERGESFY ++E ++ L+++GLL D+G ++ ++ +P+ + KSDGG
Sbjct: 255 IKLTERGESFYNPYLEAVIRELDQQGLLTEDNGALCVFLDGFTNKEGEPLPLIVKKSDGG 314
Query: 525 FTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
+ Y T+DLAAI R+ E+KA+ I+YVTD GQ HF
Sbjct: 315 YNYATTDLAAICYRVREDKAERIIYVTDAGQANHF 349
Score = 296 bits (759), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 218/351 (62%), Gaps = 52/351 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STIIGD I+R+LE+ H V+RLNHVGDWGTQFGMLI +LQ+ +P LT++ + DL +
Sbjct: 139 STIIGDCIARILEFRHHQVIRLNHVGDWGTQFGMLITYLQEAYPSALTQADALDLGDLVS 198
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FYK++K RFDEDE FK+ A Q VV LQ DP ++AW+++C SRR+FQKIYD L++ LT
Sbjct: 199 FYKKAKIRFDEDENFKETARQAVVKLQSGDPQSRQAWQLLCQQSRREFQKIYDILDIKLT 258
Query: 683 ERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG----------------- 713
ERGESFY ++E ++ L+++G L+ T K G
Sbjct: 259 ERGESFYNPYLEAVIRELDQQGLLTEDNGALCVFLDGFTNKEGEPLPLIVKKSDGGYNYA 318
Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
I+YVTD GQ HF + + AKKAG L P+ + V FG+VL
Sbjct: 319 TTDLAAICYRVREDKAERIIYVTDAGQANHFAQVFQVAKKAGFL-PDNVAVVHVAFGLVL 377
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK--NRHTELTPTELSEAQQAVAYGCI 813
GED KK KTRSG+TVKL ELLD+ + SL L+ + + E T +++ + V +
Sbjct: 378 GEDGKKLKTRSGETVKLQELLDQAIACSLADLEKRLASEEREETGDFIAKTAETVGLSAV 437
Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
KYADLS NR+ +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R GIN +D
Sbjct: 438 KYADLSQNRHSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGINFQD 488
Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 8/169 (4%)
Query: 951 LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
+++ + V +KYADLS NR+ +YVFS+DKML+ +GNTA Y+LYAY R+ SI+R GI
Sbjct: 425 IAKTAETVGLSAVKYADLSQNRHSNYVFSYDKMLNLQGNTAPYMLYAYARVQSISREGGI 484
Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
N +DL + ++ + L+ E E LAK LL++ +V+ V DL + LC+YLY++S ++
Sbjct: 485 NFQDL---SANSSLILKDESELILAKQLLQLPEVISAVEEDLLPNRLCDYLYELSKKYNR 541
Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
FY+NC + K AE + T RL L + TA+ +K +L I + +M
Sbjct: 542 FYENCPVL-KAAE----PIKTSRLFLCDLTARTLKLGLSLLGIPVLERM 585
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 18/117 (15%)
Query: 37 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKV 96
VA++N + FGD+QCN +++L K K K P ++A + L N + +
Sbjct: 32 VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAAT--------LLKNLEIDDL 74
Query: 97 IDKIEAAKPGFVNVFLSRVYAGEQMKDIIV-NGVQPPTLNKKLRVLVDFSSPNIARK 152
E A PGF+N+ L Y Q+KD+I N + T N +++VDFSSPNIA++
Sbjct: 75 CQTPEIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKE 131
>sp|Q9Z7Y3|SYR_CHLPN Arginine--tRNA ligase OS=Chlamydia pneumoniae GN=argS PE=3 SV=1
Length = 561
Score = 304 bits (779), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/360 (45%), Positives = 230/360 (63%), Gaps = 28/360 (7%)
Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
LS + + A+ AFP L D + + +++ FG +QCNDAM L ++ K K P
Sbjct: 8 LSVICSQAIAKAFPNLEDWAPEITPSTKEH---FGHYQCNDAMKLARVLK-----KAP-- 57
Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI---KDIIVNGVQP 327
++IA + +EL P IE+A GF+N S V+ +Q+ KD + G Q
Sbjct: 58 --RAIAEAIVAELPQEP-----FSLIEIAGAGFINFTFSPVFLNQQLEHFKDALKLGFQ- 109
Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
+++ ++++DFSSPNIAK+MHVGHLRSTIIGD+++R+ Y+GHDV+RLNH+GDWGT F
Sbjct: 110 --VSQPKKIIIDFSSPNIAKDMHVGHLRSTIIGDSLARIFSYVGHDVLRLNHIGDWGTAF 167
Query: 388 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
GMLI +LQ+ DY + DL + YK++ F DE FKKR+ Q VVALQ DP
Sbjct: 168 GMLITYLQENPCDY----SDLEDLTSLYKKAYVCFTNDEEFKKRSQQNVVALQAKDPQAI 223
Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW 507
WE IC+ S + FQKIYD L++ + +RGESFY + +++ LEKKGLL + + K ++
Sbjct: 224 AIWEKICETSEKAFQKIYDILDIVVEKRGESFYNPFLPEIIEDLEKKGLLTVSNDAKCVF 283
Query: 508 GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTI 567
E SIP + KSDGG+ Y T+DLAA+R RIEE+ AD I+ VTDLGQ +HF+LLE + I
Sbjct: 284 HE-AFSIPFMVQKSDGGYNYATTDLAAMRYRIEEDHADKIIIVTDLGQSLHFQLLEATAI 342
Score = 261 bits (668), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/347 (43%), Positives = 196/347 (56%), Gaps = 52/347 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIGD+++R+ Y+GHDV+RLNH+GDWGT FGMLI +LQ+ DY + DL + Y
Sbjct: 136 STIIGDSLARIFSYVGHDVLRLNHIGDWGTAFGMLITYLQENPCDY----SDLEDLTSLY 191
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
K++ F DE FKKR+ Q VVALQ DP WE IC+ S + FQKIYD L++ + +R
Sbjct: 192 KKAYVCFTNDEEFKKRSQQNVVALQAKDPQAIAIWEKICETSEKAFQKIYDILDIVVEKR 251
Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
GESFY + +++ LEKKG L+++ V+
Sbjct: 252 GESFYNPFLPEIIEDLEKKGLLTVSNDAKCVFHEAFSIPFMVQKSDGGYNYATTDLAAMR 311
Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
VTDLGQ +HF+LLE A AG L P VGFG+VL KK K
Sbjct: 312 YRIEEDHADKIIIVTDLGQSLHFQLLEATAIAAGYLQPGI--FSHVGFGLVLDPQGKKLK 369
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+ VKL ELLD + ++ + L++ ELT + E + IKY+DLS +R
Sbjct: 370 TRSGENVKLRELLDTAIEKAEEALRE--HRPELTDEAIQERAPVIGINAIKYSDLSSHRT 427
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS---EDPPE 867
DYVFSF+KML GNTA++LLYAY RI I R GI+ E PPE
Sbjct: 428 SDYVFSFEKMLRFEGNTAMFLLYAYVRIQGIKRRLGISQLSLEGPPE 474
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Query: 940 KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
+ ELT + E + IKY+DLS +R DYVFSF+KML GNTA++LLYAY
Sbjct: 394 REHRPELTDEAIQERAPVIGINAIKYSDLSSHRTSDYVFSFEKMLRFEGNTAMFLLYAYV 453
Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
RI I R GI+ L P ++ E LA TLLR + L ++LC H L +
Sbjct: 454 RIQGIKRRLGISQLSLE-----GPPEIQEPAEELLALTLLRFPEALESTIKELCPHFLTD 508
Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
YLY+++ F+ F+ +D+ + RL L +V+ +L ++T+ ++
Sbjct: 509 YLYNLTHKFNGFF-------RDSHIQDSPYAKSRLFLCALAEQVLATGMHLLGLKTLERL 561
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 23/140 (16%)
Query: 15 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
LS + + A+ AFP L D + + +++ FG +QCNDAM L ++ KK P
Sbjct: 8 LSVICSQAIAKAFPNLEDWAPEITPSTKEH---FGHYQCNDAMKLARVL-----KKAP-- 57
Query: 75 IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQM---KDIIVNGVQP 131
++IA + +EL P IE A GF+N S V+ +Q+ KD + G Q
Sbjct: 58 --RAIAEAIVAELPQEP-----FSLIEIAGAGFINFTFSPVFLNQQLEHFKDALKLGFQ- 109
Query: 132 PTLNKKLRVLVDFSSPNIAR 151
+++ ++++DFSSPNIA+
Sbjct: 110 --VSQPKKIIIDFSSPNIAK 127
>sp|Q6MEP4|SYR_PARUW Arginine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25)
GN=argS PE=3 SV=1
Length = 584
Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 169/424 (39%), Positives = 264/424 (62%), Gaps = 43/424 (10%)
Query: 211 LSDVFTHAVQVAFPELGD-----KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
L+++F A AFP+L + ST EK FG +Q N AM L K+ K
Sbjct: 8 LANLFQQATANAFPDLSVLDPNFQPEITPSTQEK----FGHYQFNSAMKLAKLLK----- 58
Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
KNP +A++I + +T L P L+K IE+A PGF+N+ S + + + DI++
Sbjct: 59 KNPRQVAEAIVNQLTDSL---PPLSK----IEIAGPGFINMTFSTDFLSKNL-DILLRDA 110
Query: 326 Q--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
P K ++++DFSSPN+AKEMHVGHLRST+IGD+++RL E+LGH V+RLNH+GDW
Sbjct: 111 HFGIPFPEKPEKIIIDFSSPNVAKEMHVGHLRSTVIGDSLARLFEFLGHHVIRLNHLGDW 170
Query: 384 GTQFGMLIAHLQDKFPDYLT--KSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
GT FGMLIA+++++ P+ L+ + + L ++Y+ SKK+FDE+ FK+RA VVALQ+
Sbjct: 171 GTAFGMLIAYMKEEAPNVLSGEQKTDLTHLVSWYRSSKKKFDEEPEFKRRAQLEVVALQQ 230
Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
+ ++AW+MIC++S++ +Q+IY L+V + +RGESFY + +V LEKKGL+++ D
Sbjct: 231 GEQKAREAWQMICEISQKAYQEIYQLLDVKIIDRGESFYNPFLPNIVSDLEKKGLVKISD 290
Query: 502 GRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
G K ++ E + ++P+ I KSDGG+ YDT+D+AAI RI EK D ++Y+TD GQ
Sbjct: 291 GAKCIFLEGFQNREGENLPLMIQKSDGGYNYDTTDMAAIYHRIYHEKGDRLIYITDAGQA 350
Query: 557 VHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP 616
HF+++ ++ + +YL +R++HV FG+++ KF ++
Sbjct: 351 THFQMIFKA-------AEKAKYLDTTQIRVDHV-----PFGLVLGTDGKKFRTRSGETEK 398
Query: 617 IADL 620
+ DL
Sbjct: 399 LIDL 402
Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/346 (40%), Positives = 206/346 (59%), Gaps = 51/346 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLT--KSPPIADLQA 622
ST+IGD+++RL E+LGH V+RLNH+GDWGT FGMLIA+++++ P+ L+ + + L +
Sbjct: 143 STVIGDSLARLFEFLGHHVIRLNHLGDWGTAFGMLIAYMKEEAPNVLSGEQKTDLTHLVS 202
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
+Y+ SKK+FDE+ FK+RA VVALQ+ + ++AW+MIC++S++ +Q+IY L+V +
Sbjct: 203 WYRSSKKKFDEEPEFKRRAQLEVVALQQGEQKAREAWQMICEISQKAYQEIYQLLDVKII 262
Query: 683 ERGESFYQKHMEQLVPYLEKKG----------------------NLSLT----------- 709
+RGESFY + +V LEKKG NL L
Sbjct: 263 DRGESFYNPFLPNIVSDLEKKGLVKISDGAKCIFLEGFQNREGENLPLMIQKSDGGYNYD 322
Query: 710 --------------KKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
K ++Y+TD GQ HF+++ + A+KA L+ + R+D V FG+VL
Sbjct: 323 TTDMAAIYHRIYHEKGDRLIYITDAGQATHFQMIFKAAEKAKYLDTTQIRVDHVPFGLVL 382
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 815
G D KKF+TRSG+T KL +LL + + L +KN E+ +E +++ G IKY
Sbjct: 383 GTDGKKFRTRSGETEKLIDLLRTAINCADKILSEKN--PEMEESERRHLAKSLGIGAIKY 440
Query: 816 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
ADLS NR DY FS+D+ML GNTA +L+YAY RIA I R N
Sbjct: 441 ADLSCNRVGDYTFSYDRMLRFEGNTAAFLMYAYVRIAGIKRRLKAN 486
Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 104/183 (56%), Gaps = 12/183 (6%)
Query: 937 LKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLY 996
L +KN E+ +E +++ G IKYADLS NR DY FS+D+ML GNTA +L+Y
Sbjct: 414 LSEKN--PEMEESERRHLAKSLGIGAIKYADLSCNRVGDYTFSYDRMLRFEGNTAAFLMY 471
Query: 997 AYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHH 1056
AY RIA I R N L ++T ++LEH E L +LR ++ L L+ DL +
Sbjct: 472 AYVRIAGIKRRLKAN---LPAVLENTHINLEHSTEIELGLHILRFHETLNLMANDLLPNR 528
Query: 1057 LCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTV 1116
L +YLY ++ F+ F+ +C EG + RLLL EATAKV+K+ IL + TV
Sbjct: 529 LTDYLYTLAEKFNAFFRDCRV-----EGTPQ--QNTRLLLCEATAKVLKQGLTILGLTTV 581
Query: 1117 HKM 1119
KM
Sbjct: 582 DKM 584
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 24/145 (16%)
Query: 15 LSDVFTHAVQVAFPELGD-----KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
L+++F A AFP+L + ST EK FG +Q N AM L K+ K
Sbjct: 8 LANLFQQATANAFPDLSVLDPNFQPEITPSTQEK----FGHYQFNSAMKLAKLLK----- 58
Query: 70 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
KNP +A++I + +T L P L+K IE A PGF+N+ S + + + DI++
Sbjct: 59 KNPRQVAEAIVNQLTDSL---PPLSK----IEIAGPGFINMTFSTDFLSKNL-DILLRDA 110
Query: 130 Q--PPTLNKKLRVLVDFSSPNIARK 152
P K ++++DFSSPN+A++
Sbjct: 111 HFGIPFPEKPEKIIIDFSSPNVAKE 135
>sp|B1X0N5|SYR_CYAA5 Arginine--tRNA ligase OS=Cyanothece sp. (strain ATCC 51142) GN=argS
PE=3 SV=1
Length = 585
Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 160/344 (46%), Positives = 230/344 (66%), Gaps = 29/344 (8%)
Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
+ GD+Q N A+ L K KNP +IAQ I + N SL + + + PG
Sbjct: 38 RHGDYQANIALPLAKKLG-----KNPREIAQIIIN--------NLSLNTICENPTIGGPG 84
Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
F+N+ L Y Q+K + N G++ ++ +V+VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85 FINLKLKSSYLETQLKSLYQNQRLGIE--KVHNADKVIVDFSSPNIAKEMHVGHLRSTII 142
Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQAFYKE 417
GD I+R LE+LG++V+RLNHVGDWGTQFGMLI +L++ +PD LT++ I DL FYK+
Sbjct: 143 GDCIARTLEFLGYEVLRLNHVGDWGTQFGMLITYLKEVYPDALTQADVLEIGDLVNFYKQ 202
Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
+KKRFDED F++ A + VV LQ D + +KAW+++CD SRR+FQKIYDRL+V L ERGE
Sbjct: 203 AKKRFDEDPKFQEAAREAVVKLQSGDEESRKAWQLLCDQSRREFQKIYDRLDVKLIERGE 262
Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDL 532
SFY ++ ++ L+++G+LE D G + ++ E + +P+ + KSDGG+ Y T+DL
Sbjct: 263 SFYNPYLNDVIKALDEQGILEKDQGAQCVFLEGFTNKSGDPLPLIVQKSDGGYNYATTDL 322
Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVH----FRLLEESTIIGDTI 572
AA++ RI+E+KA I+YVTD GQ H F++ +++ + DT+
Sbjct: 323 AALKYRIQEDKAKRIIYVTDAGQSNHFAQVFQVAKKANFLPDTV 366
Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/354 (44%), Positives = 215/354 (60%), Gaps = 52/354 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
STIIGD I+R LE+LG++V+RLNHVGDWGTQFGMLI +L++ +PD LT++ I DL
Sbjct: 139 STIIGDCIARTLEFLGYEVLRLNHVGDWGTQFGMLITYLKEVYPDALTQADVLEIGDLVN 198
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FYK++KKRFDED F++ A + VV LQ D + +KAW+++CD SRR+FQKIYDRL+V L
Sbjct: 199 FYKQAKKRFDEDPKFQEAAREAVVKLQSGDEESRKAWQLLCDQSRREFQKIYDRLDVKLI 258
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
ERGESFY ++ ++ L+++G L T K G
Sbjct: 259 ERGESFYNPYLNDVIKALDEQGILEKDQGAQCVFLEGFTNKSGDPLPLIVQKSDGGYNYA 318
Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
I+YVTD GQ HF + + AKKA L P+ + V FG+V
Sbjct: 319 TTDLAALKYRIQEDKAKRIIYVTDAGQSNHFAQVFQVAKKANFL-PDTVDVTHVPFGLVK 377
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
GED KK KTRSG+TVKL +LLDE + + L+++ + + +E ++ + V +
Sbjct: 378 GEDGKKLKTRSGETVKLKDLLDEAVNYARKDLENRLQAEDRKESEDFINHVAETVGISAV 437
Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
KYADLS NR DY+FS+DKML +GNTA Y+LYAY RI SI+R I+ E+ E
Sbjct: 438 KYADLSQNRISDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNIDYENLGE 491
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 8/169 (4%)
Query: 951 LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
++ + V +KYADLS NR DY+FS+DKML +GNTA Y+LYAY RI SI+R I
Sbjct: 425 INHVAETVGISAVKYADLSQNRISDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNI 484
Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
+ E+L ++ + L+ + E L K LL++N+ + V + L + LC+YLY++S F+
Sbjct: 485 DYENL---GENIQILLKEDTEIELGKYLLQLNETIKEVEKSLLPNRLCDYLYELSKKFNR 541
Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
FY+NC ++ D + V T RLLL + TA+ +K +L I + +M
Sbjct: 542 FYENCPVLKSD-----EPVKTSRLLLCDLTARTLKLGLSLLGISVLERM 585
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 18/109 (16%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
+ GD+Q N A+ L K KNP +IAQ I + N SL + + PG
Sbjct: 38 RHGDYQANIALPLAKKLG-----KNPREIAQIIIN--------NLSLNTICENPTIGGPG 84
Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
F+N+ L Y Q+K + N G++ ++ +V+VDFSSPNIA++
Sbjct: 85 FINLKLKSSYLETQLKSLYQNQRLGIE--KVHNADKVIVDFSSPNIAKE 131
>sp|Q10XL4|SYR_TRIEI Arginine--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101)
GN=argS PE=3 SV=1
Length = 585
Score = 300 bits (769), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 171/374 (45%), Positives = 237/374 (63%), Gaps = 41/374 (10%)
Query: 200 PVSDRMSVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCK 257
P+ +++ R F A+ AF + +G V++TN K FGD+QCN AM+L K
Sbjct: 3 PIVEQLKSR------FDKALITAFGQDLVGTDPMIVSTTNPK----FGDYQCNVAMSLAK 52
Query: 258 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 317
KDK ++IA+ + + L N E+A PGF+N+ L Y +
Sbjct: 53 KLKDK---------PKAIATQIINNLNINDYFYPP----EIAGPGFINLSLKPEYIENCL 99
Query: 318 KDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV 375
+ II + PT N + RV++DFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH+V+
Sbjct: 100 ETIIKDEKLNISPTKNPQ-RVVIDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFQGHNVL 158
Query: 376 RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQAFYKESKKRFDEDEIFKKRAY 433
RLNHVGDWGTQFGMLI++L++ FP+ L + I DL AFYK+SKKRFDED+ F++++
Sbjct: 159 RLNHVGDWGTQFGMLISYLREAFPEALKTADILDIGDLVAFYKQSKKRFDEDQDFQEKSR 218
Query: 434 QCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEK 493
Q VV LQ D + AWE++C+ SRR+FQ IYD L++ L ERGESFY + +V L +
Sbjct: 219 QEVVNLQTGAEDSRHAWELLCNQSRREFQVIYDLLDIKLNERGESFYNSMLPGIVEELNR 278
Query: 494 KGLLELDDGRKIMW--------GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKAD 545
GLLE DG + ++ GED +P+ + KSDGG+ Y T+DLAA+ RIE+E A
Sbjct: 279 LGLLEESDGAQCVFLSGFTNKEGED---VPLIVKKSDGGYNYATTDLAALVHRIEKEGAT 335
Query: 546 WIVYVTDLGQGVHF 559
++YVTD GQ HF
Sbjct: 336 RLIYVTDAGQANHF 349
Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 155/350 (44%), Positives = 209/350 (59%), Gaps = 52/350 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSP--PIADLQA 622
STIIGD+++R+LE+ GH+V+RLNHVGDWGTQFGMLI++L++ FP+ L + I DL A
Sbjct: 139 STIIGDSLARVLEFQGHNVLRLNHVGDWGTQFGMLISYLREAFPEALKTADILDIGDLVA 198
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FYK+SKKRFDED+ F++++ Q VV LQ D + AWE++C+ SRR+FQ IYD L++ L
Sbjct: 199 FYKQSKKRFDEDQDFQEKSRQEVVNLQTGAEDSRHAWELLCNQSRREFQVIYDLLDIKLN 258
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
ERGESFY + +V L + G L T K G
Sbjct: 259 ERGESFYNSMLPGIVEELNRLGLLEESDGAQCVFLSGFTNKEGEDVPLIVKKSDGGYNYA 318
Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
++YVTD GQ HF + + AKKAG + P + V FG+VL
Sbjct: 319 TTDLAALVHRIEKEGATRLIYVTDAGQANHFSQVWQVAKKAGWI-PENVEIVNVFFGLVL 377
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
GED KK KTRSG+TV+L +LLDE + ++ + L+ + + + +E + Q V +
Sbjct: 378 GEDGKKLKTRSGETVRLIDLLDEAINKARNDLEKRLKDEKRLESEEFIKNVAQVVGLSAV 437
Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
KYADLS NR +YVFSFDKML +GNTA YLLYAY R+ I+R IN E
Sbjct: 438 KYADLSQNRKSNYVFSFDKMLALQGNTAPYLLYAYVRVQGISRKGEINFE 487
Score = 139 bits (351), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 116/191 (60%), Gaps = 13/191 (6%)
Query: 931 RRSLDK-LKDKNRHTELTPTE-LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
R L+K LKD+ R L E + Q V +KYADLS NR +YVFSFDKML +G
Sbjct: 406 RNDLEKRLKDEKR---LESEEFIKNVAQVVGLSAVKYADLSQNRKSNYVFSFDKMLALQG 462
Query: 989 NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
NTA YLLYAY R+ I+R IN E LR A+ + L+ E E L K LL++N+VL +V
Sbjct: 463 NTAPYLLYAYVRVQGISRKGEINFEKLRKDAK---IILQDEPELVLGKHLLKLNEVLNIV 519
Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
T +L + LCEYLY++S F++F++NC ++ + + + T RLLL + TA+ +K
Sbjct: 520 TIELLPNRLCEYLYELSEKFNKFFENCPVLKSE-----EPLRTSRLLLCDLTARTLKLGL 574
Query: 1109 DILNIRTVHKM 1119
+L I + +M
Sbjct: 575 YLLGISVLERM 585
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 36/235 (15%)
Query: 11 VRDYLSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
+ + L F A+ AF + +G V++TN K FGD+QCN AM+L K KDK
Sbjct: 4 IVEQLKSRFDKALITAFGQDLVGTDPMIVSTTNPK----FGDYQCNVAMSLAKKLKDK-- 57
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
++IA+ + + L N E A PGF+N+ L Y ++ II +
Sbjct: 58 -------PKAIATQIINNLNINDYFYPP----EIAGPGFINLSLKPEYIENCLETIIKDE 106
Query: 129 VQ--PPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSS 186
PT N + RV++DFSSPNIA++ HL S I I ++A + QG +
Sbjct: 107 KLNISPTKNPQ-RVVIDFSSPNIAKE--MHVGHLRSTI----IGDSLARVLEFQGHNVLR 159
Query: 187 SSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVA-FPELGDKTASVASTNEKY 240
+ + + +S YL + F A++ A ++GD A + +++
Sbjct: 160 LNHVGDWGTQFGMLIS-------YLREAFPEALKTADILDIGDLVAFYKQSKKRF 207
>sp|Q8KPU9|SYR_SYNE7 Arginine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942)
GN=argS PE=3 SV=2
Length = 584
Score = 300 bits (767), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 167/361 (46%), Positives = 232/361 (64%), Gaps = 31/361 (8%)
Query: 211 LSDVFTHAVQVAF-PELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 268
L D F A+ +F PE V +TN K FGD+Q N AM+L K + P
Sbjct: 8 LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 58
Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GV 325
IA++ L N +LA + + +A PGF+N L Y Q++ + + G+
Sbjct: 59 RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 110
Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
QP ++ RV+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GH+V+RLNHVGDWGT
Sbjct: 111 QP--VSPPQRVIVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFQGHEVLRLNHVGDWGT 168
Query: 386 QFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
QFGMLIA LQ+++P L++ I+DL AFYK++K RFDED F++ A Q VV LQ +
Sbjct: 169 QFGMLIAFLQEQYPQALSQPDALDISDLVAFYKQAKARFDEDPSFQETARQRVVDLQSGE 228
Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
++AW+++CD SRR+FQKIYDRL++ L ERGESFY ++ +V L + GLL D G
Sbjct: 229 ATARQAWQLLCDQSRREFQKIYDRLDIQLEERGESFYNPYLPAIVEDLRRLGLLVEDQGA 288
Query: 504 KIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
+ ++ E + +P+ + KSDGG+ Y T+DLAA+R R+ +++A I+YVTD GQ H
Sbjct: 289 QCVFLEGFQNKEGQPLPLIVQKSDGGYNYATTDLAALRYRLGQDQAQRIIYVTDSGQANH 348
Query: 559 F 559
F
Sbjct: 349 F 349
Score = 293 bits (749), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 162/348 (46%), Positives = 214/348 (61%), Gaps = 52/348 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
STIIGD+I+R+LE+ GH+V+RLNHVGDWGTQFGMLIA LQ+++P L++ I+DL A
Sbjct: 139 STIIGDSIARVLEFQGHEVLRLNHVGDWGTQFGMLIAFLQEQYPQALSQPDALDISDLVA 198
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FYK++K RFDED F++ A Q VV LQ + ++AW+++CD SRR+FQKIYDRL++ L
Sbjct: 199 FYKQAKARFDEDPSFQETARQRVVDLQSGEATARQAWQLLCDQSRREFQKIYDRLDIQLE 258
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------------------------------ 706
ERGESFY ++ +V L + G L
Sbjct: 259 ERGESFYNPYLPAIVEDLRRLGLLVEDQGAQCVFLEGFQNKEGQPLPLIVQKSDGGYNYA 318
Query: 707 -----SLTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
+L +LG I+YVTD GQ HF + + A++AG L P +++ V FG+V
Sbjct: 319 TTDLAALRYRLGQDQAQRIIYVTDSGQANHFAQVFQVAQRAGWL-PAAAQIEHVPFGLVQ 377
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTEL--TPTELSEAQQAVAYGCI 813
GED KK KTR+GDTV+L +LLDE + R+ L + E TP + QAV G +
Sbjct: 378 GEDGKKLKTRAGDTVRLRDLLDEAVDRARTDLTTRIAAEERSETPEFIEAVAQAVGLGAV 437
Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
KYADLS NRN +Y+FSFDKML +GNTA YLLYAY RI IAR GI+
Sbjct: 438 KYADLSQNRNSNYIFSFDKMLALQGNTAPYLLYAYVRIQGIARKGGID 485
Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 115/203 (56%), Gaps = 25/203 (12%)
Query: 930 LRRSLDKLKDKNRHTELT-----------PTELSEAQQAVAYGCIKYADLSHNRNLDYVF 978
LR LD+ D+ R T+LT P + QAV G +KYADLS NRN +Y+F
Sbjct: 394 LRDLLDEAVDRAR-TDLTTRIAAEERSETPEFIEAVAQAVGLGAVKYADLSQNRNSNYIF 452
Query: 979 SFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVS--LEHEKEFALAK 1036
SFDKML +GNTA YLLYAY RI IAR GI+ AQ PV+ L E +LAK
Sbjct: 453 SFDKMLALQGNTAPYLLYAYVRIQGIARKGGIDF------AQLDPVAAVLTEPTERSLAK 506
Query: 1037 TLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLL 1096
+L++ +VL V RDL + LC YL+++S F++FYD C + + + T RLLL
Sbjct: 507 QVLQLGEVLDEVARDLLPNRLCSYLFELSQTFNQFYDRCPILNAE-----EPQRTSRLLL 561
Query: 1097 AEATAKVMKKCFDILNIRTVHKM 1119
+ TA+ +K +L I + +M
Sbjct: 562 CDLTARTLKLGLSLLGISVLERM 584
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 24/143 (16%)
Query: 15 LSDVFTHAVQVAF-PELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
L D F A+ +F PE V +TN K FGD+Q N AM+L K + P
Sbjct: 8 LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 58
Query: 73 FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GV 129
IA++ L N +LA + + A PGF+N L Y Q++ + + G+
Sbjct: 59 RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 110
Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
QP ++ RV+VDFSSPNIA++
Sbjct: 111 QP--VSPPQRVIVDFSSPNIAKE 131
>sp|Q5N643|SYR_SYNP6 Arginine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC
6301 / SAUG 1402/1) GN=argS PE=3 SV=1
Length = 584
Score = 299 bits (766), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 167/361 (46%), Positives = 232/361 (64%), Gaps = 31/361 (8%)
Query: 211 LSDVFTHAVQVAF-PELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 268
L D F A+ +F PE V +TN K FGD+Q N AM+L K + P
Sbjct: 8 LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 58
Query: 269 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GV 325
IA++ L N +LA + + +A PGF+N L Y Q++ + + G+
Sbjct: 59 RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 110
Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
QP ++ RV+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GH+V+RLNHVGDWGT
Sbjct: 111 QP--VSPPQRVIVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFQGHEVLRLNHVGDWGT 168
Query: 386 QFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
QFGMLIA LQ+++P L++ I+DL AFYK++K RFDED F++ A Q VV LQ +
Sbjct: 169 QFGMLIAFLQEQYPQALSQPDALDISDLVAFYKQAKARFDEDPSFQETARQRVVDLQSGE 228
Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
++AW+++CD SRR+FQKIYDRL++ L ERGESFY ++ +V L + GLL D G
Sbjct: 229 ATARQAWQLLCDQSRREFQKIYDRLDIQLEERGESFYNPYLPAIVEDLRRLGLLVEDQGA 288
Query: 504 KIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
+ ++ E + +P+ + KSDGG+ Y T+DLAA+R R+ +++A I+YVTD GQ H
Sbjct: 289 QCVFLEGFQNKEGQPLPLIVQKSDGGYNYATTDLAALRYRLGQDQAQRIIYVTDSGQANH 348
Query: 559 F 559
F
Sbjct: 349 F 349
Score = 294 bits (752), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 169/372 (45%), Positives = 224/372 (60%), Gaps = 55/372 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
STIIGD+I+R+LE+ GH+V+RLNHVGDWGTQFGMLIA LQ+++P L++ I+DL A
Sbjct: 139 STIIGDSIARVLEFQGHEVLRLNHVGDWGTQFGMLIAFLQEQYPQALSQPDALDISDLVA 198
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FYK++K RFDED F++ A Q VV LQ + ++AW+++CD SRR+FQKIYDRL++ L
Sbjct: 199 FYKQAKARFDEDPSFQETARQRVVDLQSGEATARQAWQLLCDQSRREFQKIYDRLDIQLE 258
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------------------------------ 706
ERGESFY ++ +V L + G L
Sbjct: 259 ERGESFYNPYLPAIVEDLRRLGLLVEDQGAQCVFLEGFQNKEGQPLPLIVQKSDGGYNYA 318
Query: 707 -----SLTKKLG------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
+L +LG I+YVTD GQ HF + + A++AG L P +++ V FG+V
Sbjct: 319 TTDLAALRYRLGQDQAQRIIYVTDSGQANHFAQVFQVAQRAGWL-PAAAQIEHVPFGLVQ 377
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTEL--TPTELSEAQQAVAYGCI 813
GED KK KTR+GDTV+L +LLDE + R+ L + E TP + QAV G +
Sbjct: 378 GEDGKKLKTRAGDTVRLRDLLDEAVDRARTDLTTRIAAEERSETPEFIEAVAQAVGLGAV 437
Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQS 873
KYADLS NRN +Y+FSFDKML +GNTA YLLYAY RI IAR GI D + DP +
Sbjct: 438 KYADLSQNRNSNYIFSFDKMLALQGNTAPYLLYAYVRIQGIARKGGI---DFAQLDPVAA 494
Query: 874 EVEDRCCPSHAK 885
E+ + S AK
Sbjct: 495 ELTEPTERSLAK 506
Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 115/203 (56%), Gaps = 25/203 (12%)
Query: 930 LRRSLDKLKDKNRHTELT-----------PTELSEAQQAVAYGCIKYADLSHNRNLDYVF 978
LR LD+ D+ R T+LT P + QAV G +KYADLS NRN +Y+F
Sbjct: 394 LRDLLDEAVDRAR-TDLTTRIAAEERSETPEFIEAVAQAVGLGAVKYADLSQNRNSNYIF 452
Query: 979 SFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLE--HEKEFALAK 1036
SFDKML +GNTA YLLYAY RI IAR GI+ AQ PV+ E E +LAK
Sbjct: 453 SFDKMLALQGNTAPYLLYAYVRIQGIARKGGIDF------AQLDPVAAELTEPTERSLAK 506
Query: 1037 TLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLL 1096
+L++ +VL V RDL + LC YL+++S F++FYD C + + + T RLLL
Sbjct: 507 QVLQLGEVLDEVARDLLPNRLCSYLFELSQTFNQFYDRCPILNAE-----EPQRTSRLLL 561
Query: 1097 AEATAKVMKKCFDILNIRTVHKM 1119
+ TA+ +K +L I + +M
Sbjct: 562 CDLTARTLKLGLSLLGISVLERM 584
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 24/143 (16%)
Query: 15 LSDVFTHAVQVAF-PELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
L D F A+ +F PE V +TN K FGD+Q N AM+L K + P
Sbjct: 8 LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 58
Query: 73 FDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN---GV 129
IA++ L N +LA + + A PGF+N L Y Q++ + + G+
Sbjct: 59 RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 110
Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
QP ++ RV+VDFSSPNIA++
Sbjct: 111 QP--VSPPQRVIVDFSSPNIAKE 131
>sp|A5GW85|SYR_SYNR3 Arginine--tRNA ligase OS=Synechococcus sp. (strain RCC307) GN=argS
PE=3 SV=1
Length = 590
Score = 295 bits (755), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/358 (44%), Positives = 219/358 (61%), Gaps = 32/358 (8%)
Query: 218 AVQVAFPEL-GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIA 276
A+Q AFPE G+ ++ ++ +FGDFQ N A+AL K K + IA
Sbjct: 15 AMQQAFPEADGELNPALGPASKP---EFGDFQANGALALAKPLKQA---------PRQIA 62
Query: 277 SVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLN----- 331
+ + +L NP + + + ++A PGF+N+ L +++ I + P L
Sbjct: 63 AAIVEQLQNNPEFSALAEAPQIAGPGFINITLKPSVLAAEVRQRIGD----PRLGVAAVE 118
Query: 332 -KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 390
+ V+VDFSSPNIAKEMHVGHLRSTIIGD ++R+LE+ GH V+RLNHVGDWGTQFGML
Sbjct: 119 QAEAPVIVDFSSPNIAKEMHVGHLRSTIIGDCLARVLEFRGHQVLRLNHVGDWGTQFGML 178
Query: 391 IAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKK 448
I HL+ P+ L + I DL AFY+E+KKRFD+DE F+ + + VV LQ D K
Sbjct: 179 ITHLKQVAPEALNTADAIDLGDLVAFYREAKKRFDDDEAFQTTSREEVVKLQGGDATSLK 238
Query: 449 AWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMW- 507
AW ++CD SRR+FQKIYDRL++ L ERGESFY + +V L GLL D+G ++
Sbjct: 239 AWGLLCDQSRREFQKIYDRLDIRLNERGESFYNPQLAAVVDDLRSSGLLVTDEGAGCVFL 298
Query: 508 ----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEE--EKADWIVYVTDLGQGVHF 559
G++ +P+ + KSDGGF Y T+DLAAIR R+ + A ++YVTD GQ HF
Sbjct: 299 EGVVGKEGKPLPLIVQKSDGGFNYATTDLAAIRYRLGSAGDGAGRVIYVTDAGQAAHF 356
Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 166/409 (40%), Positives = 224/409 (54%), Gaps = 68/409 (16%)
Query: 525 FTYDTSDLAA-IRQRIEE--------EKADWIVYV----TDLGQGVHFRLLEESTIIGDT 571
T S LAA +RQRI + E+A+ V V ++ + +H L STIIGD
Sbjct: 92 ITLKPSVLAAEVRQRIGDPRLGVAAVEQAEAPVIVDFSSPNIAKEMHVGHLR-STIIGDC 150
Query: 572 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKK 629
++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+ P+ L + I DL AFY+E+KK
Sbjct: 151 LARVLEFRGHQVLRLNHVGDWGTQFGMLITHLKQVAPEALNTADAIDLGDLVAFYREAKK 210
Query: 630 RFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFY 689
RFD+DE F+ + + VV LQ D KAW ++CD SRR+FQKIYDRL++ L ERGESFY
Sbjct: 211 RFDDDEAFQTTSREEVVKLQGGDATSLKAWGLLCDQSRREFQKIYDRLDIRLNERGESFY 270
Query: 690 QKHMEQLVPYLEKKGNL-----------------------------------------SL 708
+ +V L G L ++
Sbjct: 271 NPQLAAVVDDLRSSGLLVTDEGAGCVFLEGVVGKEGKPLPLIVQKSDGGFNYATTDLAAI 330
Query: 709 TKKLG--------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 760
+LG ++YVTD GQ HF + + AK+AG + P ++ V FG+V G+D K
Sbjct: 331 RYRLGSAGDGAGRVIYVTDAGQAAHFAGVFQVAKRAGWV-PAAASLEHVPFGLVQGDDGK 389
Query: 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADL 818
K KTR+GDTV+L +LLDE + R+ L+ + E +E + + V +KYADL
Sbjct: 390 KLKTRAGDTVRLKDLLDEAVERAQADLRRRLEEEERQESESFIDQVATTVGLAAVKYADL 449
Query: 819 SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE 867
S NR +Y FSF++ML GNTA YLLYA RI+ IAR G + PE
Sbjct: 450 STNRITNYQFSFERMLALTGNTAPYLLYAVVRISGIARKGGALDGELPE 498
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 89/162 (54%), Gaps = 10/162 (6%)
Query: 958 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
V +KYADLS NR +Y FSF++ML GNTA YLLYA RI+ IAR G +L
Sbjct: 439 VGLAAVKYADLSTNRITNYQFSFERMLALTGNTAPYLLYAVVRISGIARKGGALDGEL-- 496
Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
+ E +E+AL + LL+++ V+ V DL + LC YL+++S +F+ FYD
Sbjct: 497 ---PERLVFEEPQEWALIRQLLQLDAVISEVESDLLPNRLCTYLFELSQSFNRFYDQVPV 553
Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
++ D + + + RL L A +K +L I ++ +M
Sbjct: 554 LKAD-----EPMRSSRLALCRLAADTLKLGLSLLGIPSLERM 590
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 23/138 (16%)
Query: 22 AVQVAFPEL-GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIA 80
A+Q AFPE G+ ++ ++ +FGDFQ N A+AL K K + IA
Sbjct: 15 AMQQAFPEADGELNPALGPASKP---EFGDFQANGALALAKPLKQA---------PRQIA 62
Query: 81 SVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPTLN----- 135
+ + +L NP + + + + A PGF+N+ L +++ I + P L
Sbjct: 63 AAIVEQLQNNPEFSALAEAPQIAGPGFINITLKPSVLAAEVRQRIGD----PRLGVAAVE 118
Query: 136 -KKLRVLVDFSSPNIARK 152
+ V+VDFSSPNIA++
Sbjct: 119 QAEAPVIVDFSSPNIAKE 136
>sp|Q55486|SYR_SYNY3 Arginine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=argS PE=3 SV=1
Length = 584
Score = 294 bits (752), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 164/378 (43%), Positives = 237/378 (62%), Gaps = 27/378 (7%)
Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
+S+ L+D F A++ FP D T KFGDFQCN A+ L K
Sbjct: 2 VSILTQLNDHFAQALEGQFPS--DVTLPTPLVVPASNPKFGDFQCNIALPLAKQLG---- 55
Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
+ P IA I V +L+++ + + +A PGF+N+ L Y GEQ+ + N
Sbjct: 56 -QPPRAIAMEIVDKV--------NLSEICEPLTIAGPGFINIKLLPDYLGEQLIKLQQNQ 106
Query: 325 VQPPTLNK-KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383
+L K + R++VDFSSPNIAKEMHVGHLRSTIIGD ++R+LE+ G+DV+RLNHVGDW
Sbjct: 107 QLGVSLVKGEERIVVDFSSPNIAKEMHVGHLRSTIIGDCLARVLEFRGYDVLRLNHVGDW 166
Query: 384 GTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
GTQFGMLI +L++ +P+ L + I DL FYK++K+RFD+DE F++ + Q VVALQ
Sbjct: 167 GTQFGMLITYLKEVYPEALVTADALDIGDLVTFYKQAKQRFDQDEQFRETSRQAVVALQA 226
Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
D KAW+++C+ SRR+FQ IYD L++T+ ERGESFY + +V L++K LL D+
Sbjct: 227 GDAKSIKAWQLLCEQSRREFQLIYDCLDITIEERGESFYNPFLPGVVELLQEKDLLVEDN 286
Query: 502 GRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQG 556
G + ++ +D +P+ + KSDGG+ Y T+DLAA+ R+ + A+ I+YVTD GQ
Sbjct: 287 GAQCVFLDGFTNKDGDRLPLIVQKSDGGYNYATTDLAALNYRLNTDGAEKIIYVTDAGQA 346
Query: 557 VH----FRLLEESTIIGD 570
H F++ E++ I+ D
Sbjct: 347 NHFAQFFQVAEKAGILTD 364
Score = 277 bits (708), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 157/348 (45%), Positives = 210/348 (60%), Gaps = 52/348 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
STIIGD ++R+LE+ G+DV+RLNHVGDWGTQFGMLI +L++ +P+ L + I DL
Sbjct: 139 STIIGDCLARVLEFRGYDVLRLNHVGDWGTQFGMLITYLKEVYPEALVTADALDIGDLVT 198
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FYK++K+RFD+DE F++ + Q VVALQ D KAW+++C+ SRR+FQ IYD L++T+
Sbjct: 199 FYKQAKQRFDQDEQFRETSRQAVVALQAGDAKSIKAWQLLCEQSRREFQLIYDCLDITIE 258
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
ERGESFY + +V L++K L T K G
Sbjct: 259 ERGESFYNPFLPGVVELLQEKDLLVEDNGAQCVFLDGFTNKDGDRLPLIVQKSDGGYNYA 318
Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
I+YVTD GQ HF + A+KAGIL + T++ V FG+V
Sbjct: 319 TTDLAALNYRLNTDGAEKIIYVTDAGQANHFAQFFQVAEKAGILT-DPTQVVHVPFGLVK 377
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
GED KK KTR+GDT++L +LL E + R+ L+ + E + TE +E Q V G +
Sbjct: 378 GEDGKKLKTRAGDTIRLKDLLTEAVTRARQDLETRLTAEERSETEEFKTEVAQRVGIGAV 437
Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
KYADLS NR DYVFSFDKML +GNTA Y+LYAY RI SI+R GI+
Sbjct: 438 KYADLSQNRTSDYVFSFDKMLALQGNTAPYMLYAYARIQSISREGGID 485
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 103/187 (55%), Gaps = 16/187 (8%)
Query: 940 KNRHTELTPTELSEAQ-------QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAV 992
++ T LT E SE + Q V G +KYADLS NR DYVFSFDKML +GNTA
Sbjct: 407 QDLETRLTAEERSETEEFKTEVAQRVGIGAVKYADLSQNRTSDYVFSFDKMLALQGNTAP 466
Query: 993 YLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDL 1052
Y+LYAY RI SI+R GI+ + S + L E LAK LL+ DV+ V L
Sbjct: 467 YMLYAYARIQSISREGGIDFAQM----DSGEIVLTEPTELVLAKNLLQFADVIETVEISL 522
Query: 1053 CLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILN 1112
+ LC+YLY++S F+ FY+NC ++ + RLLL + TA+ +K +L
Sbjct: 523 LPNRLCDYLYELSKVFNRFYENCPVLKASDPQR-----GSRLLLCDLTARTLKLGLSLLG 577
Query: 1113 IRTVHKM 1119
I + +M
Sbjct: 578 IPVLDRM 584
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 16/145 (11%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
+S+ L+D F A++ FP D T KFGDFQCN A+ L K
Sbjct: 2 VSILTQLNDHFAQALEGQFPS--DVTLPTPLVVPASNPKFGDFQCNIALPLAKQLG---- 55
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
+ P IA I V +L+++ + + A PGF+N+ L Y GEQ+ + N
Sbjct: 56 -QPPRAIAMEIVDKV--------NLSEICEPLTIAGPGFINIKLLPDYLGEQLIKLQQNQ 106
Query: 129 VQPPTLNK-KLRVLVDFSSPNIARK 152
+L K + R++VDFSSPNIA++
Sbjct: 107 QLGVSLVKGEERIVVDFSSPNIAKE 131
>sp|Q3KLP4|SYR_CHLTA Arginine--tRNA ligase OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=argS PE=3 SV=1
Length = 563
Score = 292 bits (748), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 156/365 (42%), Positives = 227/365 (62%), Gaps = 27/365 (7%)
Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
++ +L+ + + A+ AFPEL + T + + +++ FG +QCNDAM L ++ +
Sbjct: 3 TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVLR----- 54
Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---IV 322
K+P IA+SI + + P IE+A GF+N S+ + Q++ +
Sbjct: 55 KSPRAIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105
Query: 323 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
NG + + K V++DFSSPNIAK+MHVGHLRSTIIGD ++R ++GHDV+RLNH+GD
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGD 162
Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
WGT FGMLI +LQ+ + + + + DL A YK++ RF ED FKKR+ VVALQ
Sbjct: 163 WGTAFGMLITYLQETSQEAIHQ---LEDLTALYKKAHARFAEDSEFKKRSQHNVVALQSG 219
Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
D W+ IC VS + FQ IY L+V L RGESFY + ++V LE K L+ L DG
Sbjct: 220 DAQALALWKQICSVSEKSFQTIYSILDVELHTRGESFYNPFLAEVVADLESKNLVTLSDG 279
Query: 503 RKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
K ++ E SIP+ I KSDGG+ Y T+D+AA+R RI++++AD I+ VTD GQ +HF+LL
Sbjct: 280 AKCVFHEAF-SIPLMIQKSDGGYNYATTDVAAMRYRIQQDQADRILIVTDSGQSLHFQLL 338
Query: 563 EESTI 567
E + +
Sbjct: 339 EATCL 343
Score = 241 bits (614), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 187/345 (54%), Gaps = 47/345 (13%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIGD ++R ++GHDV+RLNH+GDWGT FGMLI +LQ+ + + + + DL A Y
Sbjct: 136 STIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETSQEAIHQ---LEDLTALY 192
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
K++ RF ED FKKR+ VVALQ D W+ IC VS + FQ IY L+V L R
Sbjct: 193 KKAHARFAEDSEFKKRSQHNVVALQSGDAQALALWKQICSVSEKSFQTIYSILDVELHTR 252
Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
GESFY + ++V LE K ++L+ V+
Sbjct: 253 GESFYNPFLAEVVADLESKNLVTLSDGAKCVFHEAFSIPLMIQKSDGGYNYATTDVAAMR 312
Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
VTD GQ +HF+LLE AG L P+K VGFG+VL +KFK
Sbjct: 313 YRIQQDQADRILIVTDSGQSLHFQLLEATCLAAGYL-PSKGIFSHVGFGLVLDTQGRKFK 371
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+ +KL ELLD + ++ + L K +++ EL+ + IKYADLS +R
Sbjct: 372 TRSGENIKLRELLDTAVEKAKESL--KAHRPDISEEELAYQGPILGINAIKYADLSSHRI 429
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
DYVFSF+KML GNTA+ LLYAY RI I R G+ S EP
Sbjct: 430 NDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGLESLPQEEP 474
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 18/196 (9%)
Query: 930 LRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
LR LD +K + + +++ EL+ + IKYADLS +R DYVFSF+KM
Sbjct: 380 LRELLDTAVEKAKESLKAHRPDISEEELAYQGPILGINAIKYADLSSHRINDYVFSFEKM 439
Query: 984 LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
L GNTA+ LLYAY RI I R G+ S Q P+++ E ALA TLLR +
Sbjct: 440 LRFEGNTAMSLLYAYVRIQGIKRRMGLES-----LPQEEPLAIHEPAEEALALTLLRFPE 494
Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
+L L R+LC H L +YLY ++ F+ F+ +C+ D++ + RL L T +
Sbjct: 495 ILDLTLRELCPHFLTDYLYALTNKFNAFFRDCHIEGSDSQQE-------RLYLCGLTERT 547
Query: 1104 MKKCFDILNIRTVHKM 1119
+ +L ++T++ +
Sbjct: 548 LSTGMHLLGLKTLNHL 563
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 23/145 (15%)
Query: 10 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
++ +L+ + + A+ AFPEL + T + + +++ FG +QCNDAM L ++ +
Sbjct: 3 TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVL-----R 54
Query: 70 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---IV 126
K+P IA+SI + + P IE A GF+N S+ + Q++ +
Sbjct: 55 KSPRAIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105
Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAR 151
NG + + K V++DFSSPNIA+
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAK 127
>sp|O84460|SYR_CHLTR Arginine--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=argS PE=3 SV=1
Length = 563
Score = 292 bits (747), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 156/365 (42%), Positives = 226/365 (61%), Gaps = 27/365 (7%)
Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
++ +L+ + + A+ AFPEL + T + + +++ FG +QCNDAM L ++
Sbjct: 3 TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVLH----- 54
Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---IV 322
K+P IA+SI + + P IE+A GF+N S+ + Q++ +
Sbjct: 55 KSPRAIAESI----VAHIPPTP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105
Query: 323 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGD 382
NG + + K V++DFSSPNIAK+MHVGHLRSTIIGD ++R ++GHDV+RLNH+GD
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGD 162
Query: 383 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442
WGT FGMLI +LQ+ + + + + DL A YK++ RF ED FKKR+ VVALQ
Sbjct: 163 WGTAFGMLITYLQETSQEAIHQ---LEDLTALYKKAHARFAEDSEFKKRSQHNVVALQSG 219
Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDG 502
D W+ IC VS + FQ IY L+V L RGESFY + ++V LE K L+ L DG
Sbjct: 220 DAQALALWKQICSVSEKSFQTIYSILDVELHTRGESFYNPFLAEVVADLESKNLVTLSDG 279
Query: 503 RKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLL 562
K ++ E SIP+ I KSDGG+ Y T+D+AA+R RI++++AD I+ VTD GQ +HF+LL
Sbjct: 280 AKCVFHEAF-SIPLMIQKSDGGYNYATTDVAAMRYRIQQDQADRILIVTDSGQSLHFQLL 338
Query: 563 EESTI 567
E + +
Sbjct: 339 EATCL 343
Score = 243 bits (620), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 143/347 (41%), Positives = 189/347 (54%), Gaps = 49/347 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIGD ++R ++GHDV+RLNH+GDWGT FGMLI +LQ+ + + + + DL A Y
Sbjct: 136 STIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETSQEAIHQ---LEDLTALY 192
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
K++ RF ED FKKR+ VVALQ D W+ IC VS + FQ IY L+V L R
Sbjct: 193 KKAHARFAEDSEFKKRSQHNVVALQSGDAQALALWKQICSVSEKSFQTIYSILDVELHTR 252
Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
GESFY + ++V LE K ++L+ V+
Sbjct: 253 GESFYNPFLAEVVADLESKNLVTLSDGAKCVFHEAFSIPLMIQKSDGGYNYATTDVAAMR 312
Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
VTD GQ +HF+LLE AG L P+K VGFG+VL +KFK
Sbjct: 313 YRIQQDQADRILIVTDSGQSLHFQLLEATCLAAGYL-PSKGIFSHVGFGLVLDTQGRKFK 371
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+ +KL ELLD + ++ + L K +++ EL+ + IKYADLS +R
Sbjct: 372 TRSGENIKLRELLDTAVEKAKESL--KAHRPDISEEELAYQGPILGINAIKYADLSSHRI 429
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDP 870
DYVFSF+KML GNTA+ LLYAY RI I R G+ E PP+ P
Sbjct: 430 NDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGL--ESPPQEGP 474
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 18/196 (9%)
Query: 930 LRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
LR LD +K + + +++ EL+ + IKYADLS +R DYVFSF+KM
Sbjct: 380 LRELLDTAVEKAKESLKAHRPDISEEELAYQGPILGINAIKYADLSSHRINDYVFSFEKM 439
Query: 984 LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
L GNTA+ LLYAY RI I R G+ S Q P+++ E ALA TLLR +
Sbjct: 440 LRFEGNTAMSLLYAYVRIQGIKRRMGLES-----PPQEGPLAVHEPAEEALALTLLRFPE 494
Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
+L L R+LC H L +YLY ++ F+ F+ +C+ D++ + RL L T +
Sbjct: 495 ILDLTLRELCPHFLTDYLYALTNKFNAFFRDCHIEGSDSQQE-------RLYLCGLTERT 547
Query: 1104 MKKCFDILNIRTVHKM 1119
+ +L ++T++ +
Sbjct: 548 LSTGMHLLGLKTLNHL 563
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 23/145 (15%)
Query: 10 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
++ +L+ + + A+ AFPEL + T + + +++ FG +QCNDAM L ++
Sbjct: 3 TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVL-----H 54
Query: 70 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---IV 126
K+P IA+SI + + P IE A GF+N S+ + Q++ +
Sbjct: 55 KSPRAIAESI----VAHIPPTP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105
Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAR 151
NG + + K V++DFSSPNIA+
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAK 127
>sp|Q8DKN4|SYR_THEEB Arginine--tRNA ligase OS=Thermosynechococcus elongatus (strain
BP-1) GN=argS PE=3 SV=1
Length = 584
Score = 291 bits (744), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 162/361 (44%), Positives = 225/361 (62%), Gaps = 32/361 (8%)
Query: 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 270
L D A+Q A P + ++ KFGD+Q N ++L K K P +
Sbjct: 8 LGDRLRRALQAALPLDTYPQPLLVPASQV---KFGDYQSNVCLSLAKQLG-----KAPRE 59
Query: 271 IAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNV-----FLSRVYAGEQIKDIIVNGV 325
+AQ + + E P +E+A PGF+N FL+ + D + G+
Sbjct: 60 LAQEVVPHLEVEDLCQP--------VEIAGPGFLNFRLKPEFLAATLQAARGSDRL--GI 109
Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
PP + RV+VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE+ GH V+RLNHVGDWGT
Sbjct: 110 -PPAREPR-RVVVDFSSPNIAKEMHVGHLRSTIIGDCIARILEFQGHTVLRLNHVGDWGT 167
Query: 386 QFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
QFGMLIA+L + +PD LT + + DL FYK++K+RFD D F+++A VVALQ+ +
Sbjct: 168 QFGMLIAYLDEVYPDALTTANALDLGDLVTFYKKAKQRFDSDPEFQQKARAKVVALQQGE 227
Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
++AW+++C+ SRR+FQKIYD L++ LTERGESFY + ++ L GLL D G
Sbjct: 228 EQSRRAWQLLCEQSRREFQKIYDLLDIQLTERGESFYNPFLPAVIEDLAACGLLVEDQGA 287
Query: 504 KIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
K+++ E + P+ I KSDGG+ Y T+DLAA+R RI++++ADWI+YVTD+GQ H
Sbjct: 288 KVVFLEGFTNKEGQPQPLIIQKSDGGYNYATTDLAALRYRIDKDQADWIIYVTDVGQSTH 347
Query: 559 F 559
F
Sbjct: 348 F 348
Score = 271 bits (694), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/398 (40%), Positives = 224/398 (56%), Gaps = 61/398 (15%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STIIGD I+R+LE+ GH V+RLNHVGDWGTQFGMLIA+L + +PD LT + + DL
Sbjct: 138 STIIGDCIARILEFQGHTVLRLNHVGDWGTQFGMLIAYLDEVYPDALTTANALDLGDLVT 197
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FYK++K+RFD D F+++A VVALQ+ + ++AW+++C+ SRR+FQKIYD L++ LT
Sbjct: 198 FYKKAKQRFDSDPEFQQKARAKVVALQQGEEQSRRAWQLLCEQSRREFQKIYDLLDIQLT 257
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
ERGESFY + ++ L G L T K G
Sbjct: 258 ERGESFYNPFLPAVIEDLAACGLLVEDQGAKVVFLEGFTNKEGQPQPLIIQKSDGGYNYA 317
Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
I+YVTD+GQ HF + + A++AG + P+ T + V FG+VL
Sbjct: 318 TTDLAALRYRIDKDQADWIIYVTDVGQSTHFAQVFQVAQRAGWVPPHVT-LTHVPFGLVL 376
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK---NRHTELTPTELSEAQQAVAYGC 812
GED K+ KTRSG+T++L +LL E + RS L+ + TE +P + +A+ G
Sbjct: 377 GEDGKRLKTRSGETIRLIDLLTEAIARSRADLEQRLATEGRTE-SPEFIDTVARAIGIGA 435
Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN--SEDPPEPDP 870
+KYADLS NRN +YVFS+DKML +GNTA YLLYAY R+ + R I+ + P P
Sbjct: 436 VKYADLSQNRNSNYVFSYDKMLSLQGNTAPYLLYAYVRVQGLTRRGDIDWCTLSPDSPLL 495
Query: 871 SQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLC 908
+ E E H H +L+ L N LC
Sbjct: 496 LEDETE-----QHLAKHLVQLEETLDLVSTELLPNRLC 528
Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 100/173 (57%), Gaps = 8/173 (4%)
Query: 947 TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006
+P + +A+ G +KYADLS NRN +YVFS+DKML +GNTA YLLYAY R+ + R
Sbjct: 420 SPEFIDTVARAIGIGAVKYADLSQNRNSNYVFSYDKMLSLQGNTAPYLLYAYVRVQGLTR 479
Query: 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST 1066
I D + +P+ LE E E LAK L+++ + L LV+ +L + LC+YL+++S
Sbjct: 480 RGDI---DWCTLSPDSPLLLEDETEQHLAKHLVQLEETLDLVSTELLPNRLCQYLFELSQ 536
Query: 1067 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
F++FYD C + K RL LA TA+ +K +L I + ++
Sbjct: 537 LFNQFYDRCPILSAPQPTK-----QSRLTLAYLTAQTLKLGLSLLGIPVLDRI 584
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 25/143 (17%)
Query: 15 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
L D A+Q A P + ++ KFGD+Q N ++L K K P +
Sbjct: 8 LGDRLRRALQAALPLDTYPQPLLVPASQV---KFGDYQSNVCLSLAKQLG-----KAPRE 59
Query: 75 IAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNV-----FLSRVYAGEQMKDIIVNGV 129
+AQ + + E P +E A PGF+N FL+ + D + G+
Sbjct: 60 LAQEVVPHLEVEDLCQP--------VEIAGPGFLNFRLKPEFLAATLQAARGSDRL--GI 109
Query: 130 QPPTLNKKLRVLVDFSSPNIARK 152
PP + RV+VDFSSPNIA++
Sbjct: 110 -PPAREPR-RVVVDFSSPNIAKE 130
>sp|Q7VE03|SYR_PROMA Arginine--tRNA ligase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=argS PE=3 SV=1
Length = 603
Score = 291 bits (744), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 166/372 (44%), Positives = 231/372 (62%), Gaps = 32/372 (8%)
Query: 211 LSDVFTHAVQVAFPELGDKTASVAS-TNEKYVH----KFGDFQCNDAMALCKIFKDKGEK 265
L+ A+ AFPE + N + V +FGDFQ N A+AL +I K
Sbjct: 8 LNQQVQRALNTAFPEAASQVKESGDFLNPQLVAATKPEFGDFQINGALALARIIK----- 62
Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK-----DI 320
K+P + IA ++ +L +N + E+A PGF+N+ L +I D+
Sbjct: 63 KSP----RQIAEILIKQLESNEVFKAICLPPEIAGPGFINLTLQNTCLINEITSRLNDDL 118
Query: 321 I-VNGVQPPTLNKKLR-VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
+ V V + KKL+ V+VDFSSPNIAKEMHVGHLRSTIIGD+I+R+L Y G+ V+RLN
Sbjct: 119 LGVPLVNDDEITKKLKPVIVDFSSPNIAKEMHVGHLRSTIIGDSIARILNYRGYKVIRLN 178
Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCV 436
HVGDWGTQFGMLI HL++ P LT + I +L FYK++K+RFDEDE F++ + V
Sbjct: 179 HVGDWGTQFGMLITHLKEVAPKALTTANVINLGNLVEFYKKAKQRFDEDEYFQQCSRNEV 238
Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 496
V LQR + + KAWE++C+ SR++F KIYDRL + ++ERGESFY ++ ++ L + GL
Sbjct: 239 VNLQRGNKESLKAWELLCEQSRKEFNKIYDRLKIEISERGESFYNPFLQGVIDDLTRSGL 298
Query: 497 LELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEK----ADWI 547
L DDG K ++ G+D +P+ I K+DGGF Y T+DLAAIR R++++ A I
Sbjct: 299 LVEDDGAKCVFLNGINGKDGNPLPLIIQKADGGFNYATTDLAAIRYRLKDQPDGDGAGRI 358
Query: 548 VYVTDLGQGVHF 559
+YVTD GQ HF
Sbjct: 359 IYVTDSGQANHF 370
Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 148/352 (42%), Positives = 203/352 (57%), Gaps = 60/352 (17%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STIIGD+I+R+L Y G+ V+RLNHVGDWGTQFGMLI HL++ P LT + I +L
Sbjct: 156 STIIGDSIARILNYRGYKVIRLNHVGDWGTQFGMLITHLKEVAPKALTTANVINLGNLVE 215
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FYK++K+RFDEDE F++ + VV LQR + + KAWE++C+ SR++F KIYDRL + ++
Sbjct: 216 FYKKAKQRFDEDEYFQQCSRNEVVNLQRGNKESLKAWELLCEQSRKEFNKIYDRLKIEIS 275
Query: 683 ERGESFYQKHMEQLVPYLEKKG-----------------------------------NLS 707
ERGESFY ++ ++ L + G N +
Sbjct: 276 ERGESFYNPFLQGVIDDLTRSGLLVEDDGAKCVFLNGINGKDGNPLPLIIQKADGGFNYA 335
Query: 708 LTKKLGIVY----------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
T I Y VTD GQ HF + + AK+A L P+ +R++ V F
Sbjct: 336 TTDLAAIRYRLKDQPDGDGAGRIIYVTDSGQANHFAGVFQVAKRAKWL-PSSSRIEHVPF 394
Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS-LD---KLKDKNRHTELTPTELSEAQQA 807
G+V GED KK KTRSG+TV+L +LLDE + R+ LD +L ++NR + + +
Sbjct: 395 GLVQGEDGKKLKTRSGETVRLKDLLDEAISRAKLDIERRLNEENRKE--SQAFIEKVSNT 452
Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
+ +KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA I R G
Sbjct: 453 IGIAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGINRKGG 504
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 13/184 (7%)
Query: 936 KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
+L ++NR + + + + +KYADLS NR +Y FSFD+ML +GNTA YLL
Sbjct: 433 RLNEENRKE--SQAFIEKVSNTIGIAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLL 490
Query: 996 YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
YA RIA I R G DL + ++ +E+ L + LL+ ++V++ V +L +
Sbjct: 491 YAVVRIAGINRKGG----DLHSSVNK--LNFSEPQEWRLIRELLKFDEVIIAVEEELLPN 544
Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRT 1115
LC YL+++S F+ FYD ++ + + + RL L + T +KK ++L I T
Sbjct: 545 RLCNYLFELSQVFNRFYDQIPVLKAEEPSR-----SCRLALCQLTGDTLKKGLNLLGIST 599
Query: 1116 VHKM 1119
+ +M
Sbjct: 600 LERM 603
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 21/150 (14%)
Query: 15 LSDVFTHAVQVAFPELGDKTASVAS-TNEKYVH----KFGDFQCNDAMALCKIFKDKGEK 69
L+ A+ AFPE + N + V +FGDFQ N A+AL +I K
Sbjct: 8 LNQQVQRALNTAFPEAASQVKESGDFLNPQLVAATKPEFGDFQINGALALARII-----K 62
Query: 70 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK-----DI 124
K+P + IA ++ +L +N + E A PGF+N+ L ++ D+
Sbjct: 63 KSP----RQIAEILIKQLESNEVFKAICLPPEIAGPGFINLTLQNTCLINEITSRLNDDL 118
Query: 125 I-VNGVQPPTLNKKLR-VLVDFSSPNIARK 152
+ V V + KKL+ V+VDFSSPNIA++
Sbjct: 119 LGVPLVNDDEITKKLKPVIVDFSSPNIAKE 148
>sp|Q3AGU9|SYR_SYNSC Arginine--tRNA ligase OS=Synechococcus sp. (strain CC9605) GN=argS
PE=3 SV=1
Length = 590
Score = 290 bits (742), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 164/370 (44%), Positives = 222/370 (60%), Gaps = 29/370 (7%)
Query: 205 MSVRDYLSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
+S+ L A+Q AFPE D + AS E FGDFQ N A+ L K K
Sbjct: 2 LSLSQSLDAQLRAAMQRAFPEADAGLDPQLASASKQE-----FGDFQANGALPLAKPLKQ 56
Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL-SRVYAGEQIKDI 320
+ IA+ + +L +P+ + + ++A PGF+N+ + A E +
Sbjct: 57 A---------PRQIATAIVEQLQADPAFTDLCLEPQIAGPGFINLTIRPERLAAEVSARL 107
Query: 321 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
+ P ++ V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLNHV
Sbjct: 108 GDERLGVPAVSNAAPVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHPVLRLNHV 167
Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
GDWGTQFGMLI HL+ P+ L + + DL AFY+E+KKRFD+DE F+ + VV
Sbjct: 168 GDWGTQFGMLITHLKQVAPEALDTADAVDLGDLVAFYREAKKRFDDDEAFQSTSRDEVVK 227
Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
LQ DP KAW ++CD SRR+FQKIYDRL++ L+ERGESFY + ++ L+ LL
Sbjct: 228 LQGGDPVSLKAWGLLCDQSRREFQKIYDRLDILLSERGESFYNPFLPAVIDGLKAAELLV 287
Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI----EEEKADWIVY 549
DDG + ++ G+D +P+ + KSDGGF Y T+DLAAIR R E + A +VY
Sbjct: 288 TDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYATTDLAAIRYRFGAAPEGDGARRVVY 347
Query: 550 VTDLGQGVHF 559
VTD GQ HF
Sbjct: 348 VTDAGQANHF 357
Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 150/350 (42%), Positives = 205/350 (58%), Gaps = 56/350 (16%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+ P+ L + + DL A
Sbjct: 143 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALDTADAVDLGDLVA 202
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FY+E+KKRFD+DE F+ + VV LQ DP KAW ++CD SRR+FQKIYDRL++ L+
Sbjct: 203 FYREAKKRFDDDEAFQSTSRDEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDILLS 262
Query: 683 ERGESFYQKHMEQLV-------------------------------PYLEKKGN------ 705
ERGESFY + ++ P + +K +
Sbjct: 263 ERGESFYNPFLPAVIDGLKAAELLVTDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYA 322
Query: 706 ----LSLTKKLG----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
++ + G +VYVTD GQ HF + + A++AG + P+ R++ V F
Sbjct: 323 TTDLAAIRYRFGAAPEGDGARRVVYVTDAGQANHFAGVFQVAERAGWI-PDGARLEHVPF 381
Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
G+V GED KK KTR+GDTV+L +LLDE + R+ L+ + + E + +E + V
Sbjct: 382 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERAETDLRSRLKEEERSESEEFIQHVAGTVG 441
Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
+KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G
Sbjct: 442 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 491
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 89/162 (54%), Gaps = 11/162 (6%)
Query: 958 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
V +KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G DL
Sbjct: 440 VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DL-- 493
Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
AA + + +E+AL + LL+ + V+ V +L + LC YL+++S F+ FYD
Sbjct: 494 AATNAQLQFSEPQEWALVRELLKFDAVIAEVEEELLPNRLCSYLFELSQVFNRFYDQVPV 553
Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
++ D E RL L TA ++ +L I T+ +M
Sbjct: 554 LKADPE-----ALASRLALCRLTADTLRLGLGLLGIATLDRM 590
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
+S+ L A+Q AFPE D + AS E FGDFQ N A+ L K K
Sbjct: 2 LSLSQSLDAQLRAAMQRAFPEADAGLDPQLASASKQE-----FGDFQANGALPLAKPLKQ 56
Query: 66 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-SRVYAGEQMKDI 124
+ IA+ + +L +P+ + + + A PGF+N+ + A E +
Sbjct: 57 A---------PRQIATAIVEQLQADPAFTDLCLEPQIAGPGFINLTIRPERLAAEVSARL 107
Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
+ P ++ V+VDFSSPNIA++
Sbjct: 108 GDERLGVPAVSNAAPVVVDFSSPNIAKE 135
>sp|B7KCT7|SYR_CYAP7 Arginine--tRNA ligase OS=Cyanothece sp. (strain PCC 7424) GN=argS
PE=3 SV=1
Length = 585
Score = 290 bits (742), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 202/541 (37%), Positives = 303/541 (56%), Gaps = 69/541 (12%)
Query: 205 MSVRDYLSDVFTHAVQVAFPE-LGD-KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 262
+S+ + L F A++ AF + D + V +TN K FGD+Q N A++L K K
Sbjct: 2 ISLIEQLKTRFIQALKTAFDQDFSDLEGLVVPATNPK----FGDYQSNVALSLAKPLK-- 55
Query: 263 GEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEVAKPGFVNV-----FLSRVYAGEQ 316
+ P IA+ I + S+L P ++A GF+N+ FL + A Q
Sbjct: 56 ---QPPRTIAEQIIKALDISDLCEPP---------QIAGAGFINLTLKANFLENLLAKIQ 103
Query: 317 IKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVR 376
KD + GV+ + RV+VDFSSPNIAKEMHVGHLRSTI+GD I+R+LE+ GHDV+R
Sbjct: 104 -KDSRL-GVEKAS--PSARVIVDFSSPNIAKEMHVGHLRSTILGDCIARVLEFRGHDVLR 159
Query: 377 LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQ 434
LNHVGDWGTQFGMLIA+L++ +P+ LT + + DL AFYK++K RFDEDE FK+ A +
Sbjct: 160 LNHVGDWGTQFGMLIAYLREVYPEALTTADALNLGDLVAFYKKAKVRFDEDETFKETARK 219
Query: 435 CVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKK 494
VV LQ D + AW+++CD SRR+FQ IY+ L+V LTERGESFY + ++V L+++
Sbjct: 220 EVVKLQAGAKDTRHAWQLLCDQSRREFQVIYNILDVNLTERGESFYNPLLPEIVGQLDEE 279
Query: 495 GLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVY 549
GLL D G K ++ E + +P+ + KSD G+ Y T+DLAA++ RI+E+KA+ I+Y
Sbjct: 280 GLLTEDQGAKCVFLEGFTNKEGNPLPLIVQKSDEGYNYATTDLAALKYRIKEDKAERIIY 339
Query: 550 VTDLGQGVH----FRLLEESTIIGDTI--------------SRLLEYLGHDVVRLNHVGD 591
VTD GQ H F++ +++ II + I + L+ D ++L + D
Sbjct: 340 VTDAGQANHFAQVFQVAKKAGIIPENIEVVHVAFGVVKGEDGKKLKTRSGDTIKLKDLID 399
Query: 592 WGTQFG------MLIAHLQDKFPDYLTKSPPIADLQAF-YKESKKRFDEDEIFKKRAYQC 644
+ L + + D++ + + A Y + + D +F +Y
Sbjct: 400 EAVAYARRDLEKRLAEDDRKESKDFINHVSQVVGISAIKYADLSQNRISDYVF---SYDK 456
Query: 645 VVALQRFDPDYK-KAWEMICDVSRR---DFQKIYDRLNVTLTERGESFYQKHMEQLVPYL 700
++ALQ Y A+ I +SR DF+K+ ++ V L+E E K++ Q +
Sbjct: 457 MLALQGNTAPYMLYAYARIQSISREGNIDFEKLDEKAKVILSEETELALGKYLLQFTEVI 516
Query: 701 E 701
E
Sbjct: 517 E 517
Score = 282 bits (721), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 213/351 (60%), Gaps = 54/351 (15%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STI+GD I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +P+ LT + + DL A
Sbjct: 139 STILGDCIARVLEFRGHDVLRLNHVGDWGTQFGMLIAYLREVYPEALTTADALNLGDLVA 198
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FYK++K RFDEDE FK+ A + VV LQ D + AW+++CD SRR+FQ IY+ L+V LT
Sbjct: 199 FYKKAKVRFDEDETFKETARKEVVKLQAGAKDTRHAWQLLCDQSRREFQVIYNILDVNLT 258
Query: 683 ERGESFYQKHMEQLVPYLEKKGNLS------------LTKKLG----------------- 713
ERGESFY + ++V L+++G L+ T K G
Sbjct: 259 ERGESFYNPLLPEIVGQLDEEGLLTEDQGAKCVFLEGFTNKEGNPLPLIVQKSDEGYNYA 318
Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
I+YVTD GQ HF + + AKKAGI+ P + V FGVV
Sbjct: 319 TTDLAALKYRIKEDKAERIIYVTDAGQANHFAQVFQVAKKAGII-PENIEVVHVAFGVVK 377
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGL---RRSLDKLKDKNRHTELTPTELSEAQQAVAYGC 812
GED KK KTRSGDT+KL +L+DE + RR L+K ++ E + ++ Q V
Sbjct: 378 GEDGKKLKTRSGDTIKLKDLIDEAVAYARRDLEKRLAEDDRKE-SKDFINHVSQVVGISA 436
Query: 813 IKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
IKYADLS NR DYVFS+DKML +GNTA Y+LYAY RI SI+R I+ E
Sbjct: 437 IKYADLSQNRISDYVFSYDKMLALQGNTAPYMLYAYARIQSISREGNIDFE 487
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 8/169 (4%)
Query: 951 LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
++ Q V IKYADLS NR DYVFS+DKML +GNTA Y+LYAY RI SI+R I
Sbjct: 425 INHVSQVVGISAIKYADLSQNRISDYVFSYDKMLALQGNTAPYMLYAYARIQSISREGNI 484
Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
+ E L A+ V L E E AL K LL+ +V+ V +L + LCEYLY++S F++
Sbjct: 485 DFEKLDEKAK---VILSEETELALGKYLLQFTEVIEDVEINLLPNRLCEYLYELSKKFNK 541
Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
FY+NC ++ +E IK T RL+L + TA+ +K +L I V +M
Sbjct: 542 FYENCPVLK--SEDPIK---TSRLILCDLTARTLKLGLSLLGIAVVERM 585
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 30/152 (19%)
Query: 9 MSVRDYLSDVFTHAVQVAFPE-LGD-KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDK 66
+S+ + L F A++ AF + D + V +TN K FGD+Q N A++L K K
Sbjct: 2 ISLIEQLKTRFIQALKTAFDQDFSDLEGLVVPATNPK----FGDYQSNVALSLAKPLK-- 55
Query: 67 GEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEAAKPGFVNV-----FLSRVYAGEQ 120
+ P IA+ I + S+L P +A GF+N+ FL + A Q
Sbjct: 56 ---QPPRTIAEQIIKALDISDLCEPPQIAGA---------GFINLTLKANFLENLLAKIQ 103
Query: 121 MKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
+ GV+ + RV+VDFSSPNIA++
Sbjct: 104 KDSRL--GVEKAS--PSARVIVDFSSPNIAKE 131
>sp|Q8YQU9|SYR_NOSS1 Arginine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=argS PE=3 SV=1
Length = 588
Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/327 (47%), Positives = 215/327 (65%), Gaps = 25/327 (7%)
Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
KFGD+Q N A++L K + ++IAS + +L ++++ +K E+A PG
Sbjct: 38 KFGDYQANVALSLSKKLGQQ---------PRAIASAIVEKL----DVSEICEKPEIAGPG 84
Query: 303 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTII 359
F+N+ L Y Q+ I + GV PT R +VDFSSPNIAKEMHVGHLRSTII
Sbjct: 85 FINLKLKTAYLEAQLNTIQADTRLGV--PTAKHPQREIVDFSSPNIAKEMHVGHLRSTII 142
Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKE 417
GD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++ P+ LT + I DL +FY++
Sbjct: 143 GDSIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVSPEALTTANALDIGDLVSFYRQ 202
Query: 418 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE 477
+K+RFD DE F++ A Q VV LQ D AW+++C+ SR++FQ IYD L+V LTERGE
Sbjct: 203 AKQRFDADEAFQETARQEVVRLQAGAADTLHAWKLLCEQSRQEFQVIYDLLDVKLTERGE 262
Query: 478 SFYQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDL 532
SFY + +V LEK GLL + G K ++ + +P+ + KSDGG+ Y T+DL
Sbjct: 263 SFYNPLLPTVVENLEKSGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNYATTDL 322
Query: 533 AAIRQRIEEEKADWIVYVTDLGQGVHF 559
AA+R RI++++A I+Y+TD GQ HF
Sbjct: 323 AALRYRIQKDEAKRIIYITDAGQANHF 349
Score = 276 bits (707), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 208/351 (59%), Gaps = 52/351 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++ P+ LT + I DL +
Sbjct: 139 STIIGDSIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVSPEALTTANALDIGDLVS 198
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FY+++K+RFD DE F++ A Q VV LQ D AW+++C+ SR++FQ IYD L+V LT
Sbjct: 199 FYRQAKQRFDADEAFQETARQEVVRLQAGAADTLHAWKLLCEQSRQEFQVIYDLLDVKLT 258
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
ERGESFY + +V LEK G L T + G
Sbjct: 259 ERGESFYNPLLPTVVENLEKSGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNYA 318
Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
I+Y+TD GQ HF + A+KAG + P+ + V FG+VL
Sbjct: 319 TTDLAALRYRIQKDEAKRIIYITDAGQANHFAQFFQVARKAGWI-PDDVELVHVPFGLVL 377
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLD--KLKDKNRHTELTPTELSEAQQAVAYGCI 813
GED KKFKTRSGDTV+L +LLDE + R+ +++ K E T + + + V +
Sbjct: 378 GEDGKKFKTRSGDTVRLRDLLDEAISRAHADVEVRLKAEEREETAEFIDKVAEVVGISAV 437
Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
KYADLS NR +Y+FS+DKMLD +GNTA Y+LYAY RI I+R IN D
Sbjct: 438 KYADLSQNRTSNYIFSYDKMLDLKGNTAPYMLYAYARIQGISRKGEINFAD 488
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 112/185 (60%), Gaps = 9/185 (4%)
Query: 936 KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 995
+LK + R E T + + + V +KYADLS NR +Y+FS+DKMLD +GNTA Y+L
Sbjct: 412 RLKAEER--EETAEFIDKVAEVVGISAVKYADLSQNRTSNYIFSYDKMLDLKGNTAPYML 469
Query: 996 YAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLH 1055
YAY RI I+R IN DL + V L+HE EFALAK LL++ +V+ V DL +
Sbjct: 470 YAYARIQGISRKGEINFADL---GDNAKVILQHETEFALAKYLLQLGEVISTVEEDLSPN 526
Query: 1056 HLCEYLYDISTAFSEFYDNCYCIEK-DAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIR 1114
LCEYLY++S F+ FYD ++ AE + + T RL+L + TA+ +K +L I+
Sbjct: 527 RLCEYLYELSKRFNAFYDRNQGVQVLSAE---EPLRTSRLVLCDLTARTLKLGLSLLGIQ 583
Query: 1115 TVHKM 1119
+ +M
Sbjct: 584 VLERM 588
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 18/109 (16%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
KFGD+Q N A++L K + ++IAS + +L ++++ +K E A PG
Sbjct: 38 KFGDYQANVALSLSKKLGQQ---------PRAIASAIVEKL----DVSEICEKPEIAGPG 84
Query: 107 FVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
F+N+ L Y Q+ I + GV PT R +VDFSSPNIA++
Sbjct: 85 FINLKLKTAYLEAQLNTIQADTRLGV--PTAKHPQREIVDFSSPNIAKE 131
>sp|B8HSK8|SYR_CYAP4 Arginine--tRNA ligase OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=argS PE=3 SV=1
Length = 585
Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 152/330 (46%), Positives = 211/330 (63%), Gaps = 31/330 (9%)
Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
KFGD+Q N + L K ++IAS + L + + + +A PG
Sbjct: 38 KFGDYQSNAPLPLAKQLNQP---------PRTIASTIVDHL----EVGEAWEPPTIAGPG 84
Query: 303 FVNVFLSRVYAGEQIK------DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRS 356
F+N L Y Q++ + ++ V+ P LRV+VDFSSPNIAKEMHVGHLRS
Sbjct: 85 FINFTLKTSYLASQLELRLTDPRLGISAVKLP-----LRVVVDFSSPNIAKEMHVGHLRS 139
Query: 357 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAF 414
TIIGD ++R+LE+LGH+V+RLNHVGDWGTQFGMLI +L++ P+ LT + DL AF
Sbjct: 140 TIIGDCLARILEFLGHEVLRLNHVGDWGTQFGMLITYLREVCPEALTAPDAVDLGDLVAF 199
Query: 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 474
Y+++K+RFD D F+ A Q VV LQ +PD AW+++C SRR+F+KIY+ L++ LTE
Sbjct: 200 YRQAKQRFDSDPDFQAIARQEVVRLQSGEPDSLHAWQLLCAQSRREFEKIYNLLDIKLTE 259
Query: 475 RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDT 529
RGESFY + Q++ L++ GLL D G K ++ E + P+ + KSDGG+ Y T
Sbjct: 260 RGESFYNPLLPQVIQALDQTGLLVEDQGAKCVFLEGYTNKAGDPQPLIVQKSDGGYIYAT 319
Query: 530 SDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
+DLAA+R RIE+++ADWI+YVTD GQ HF
Sbjct: 320 TDLAALRYRIEQDQADWIIYVTDAGQSTHF 349
Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 160/373 (42%), Positives = 218/373 (58%), Gaps = 57/373 (15%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STIIGD ++R+LE+LGH+V+RLNHVGDWGTQFGMLI +L++ P+ LT + DL A
Sbjct: 139 STIIGDCLARILEFLGHEVLRLNHVGDWGTQFGMLITYLREVCPEALTAPDAVDLGDLVA 198
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FY+++K+RFD D F+ A Q VV LQ +PD AW+++C SRR+F+KIY+ L++ LT
Sbjct: 199 FYRQAKQRFDSDPDFQAIARQEVVRLQSGEPDSLHAWQLLCAQSRREFEKIYNLLDIKLT 258
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
ERGESFY + Q++ L++ G L T K G
Sbjct: 259 ERGESFYNPLLPQVIQALDQTGLLVEDQGAKCVFLEGYTNKAGDPQPLIVQKSDGGYIYA 318
Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
I+YVTD GQ HF + + A++AG + PN+ R+ V FG+V
Sbjct: 319 TTDLAALRYRIEQDQADWIIYVTDAGQSTHFAQVFQVAQRAGWI-PNRIRLVHVPFGLVQ 377
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQAVAYG 811
GED KK KTRSGDTV+L +LLDE + R+ + +L+ + R TP + Q V G
Sbjct: 378 GEDGKKLKTRSGDTVRLQDLLDEAIDRARNDLVSRLEAEGRQE--TPEFIDHVAQVVGIG 435
Query: 812 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPE-PDP 870
+KYADLS NR +YVFS+DKML +GNTA YL+YAY R+ I+R I+ E E P
Sbjct: 436 AVKYADLSQNRTSNYVFSYDKMLSLQGNTAPYLIYAYVRVQGISRKGQIDLEQLTEQPTL 495
Query: 871 SQSEVEDRCCPSH 883
S E E++ H
Sbjct: 496 SLQEEEEKLLARH 508
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 8/173 (4%)
Query: 947 TPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006
TP + Q V G +KYADLS NR +YVFS+DKML +GNTA YL+YAY R+ I+R
Sbjct: 421 TPEFIDHVAQVVGIGAVKYADLSQNRTSNYVFSYDKMLSLQGNTAPYLIYAYVRVQGISR 480
Query: 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST 1066
I+ E L + +SL+ E+E LA+ LL++ DVL VT DL + LC+YL+++S
Sbjct: 481 KGQIDLEQL---TEQPTLSLQEEEEKLLARHLLQLEDVLAQVTEDLLPNRLCQYLFELSQ 537
Query: 1067 AFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
F++FYD C ++ + + + RL LA+ TA+ +K +L I+ + +M
Sbjct: 538 KFNQFYDRCPILQAE-----EPLRNSRLGLAQLTARTLKLGLSLLGIQVLERM 585
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
KFGD+Q N + L K ++IAS + L + + + A PG
Sbjct: 38 KFGDYQSNAPLPLAKQLNQP---------PRTIASTIVDHL----EVGEAWEPPTIAGPG 84
Query: 107 FVNVFLSRVYAGEQMK------DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
F+N L Y Q++ + ++ V+ P LRV+VDFSSPNIA++
Sbjct: 85 FINFTLKTSYLASQLELRLTDPRLGISAVKLP-----LRVVVDFSSPNIAKE 131
>sp|Q0I6R7|SYR_SYNS3 Arginine--tRNA ligase OS=Synechococcus sp. (strain CC9311) GN=argS
PE=3 SV=1
Length = 590
Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 162/372 (43%), Positives = 226/372 (60%), Gaps = 33/372 (8%)
Query: 205 MSVRDYLSDVFTHAVQVAFPE---LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
+ + L A+Q AFP+ L D + A+ E FGDFQ N A+ L K K
Sbjct: 2 LRIAQALDTQLREAMQRAFPDVDALLDPQLAPANKPE-----FGDFQANGALPLAKPLKQ 56
Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
+ IA + L +P+ A + + ++A PGF+N+ + ++ +
Sbjct: 57 A---------PRLIAGAIVEALQADPAFAALCLEPQIAGPGFINLTIRPERLAAEVSARL 107
Query: 322 VN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
+ GV P + V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLN
Sbjct: 108 GDPRLGV--PEVQSDAAVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHRVLRLN 165
Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCV 436
HVGDWGTQFGMLI HL+ P+ L ++ + DL AFY+E+KKRFDEDE F+ + + V
Sbjct: 166 HVGDWGTQFGMLITHLKQVAPETLNRADAVDLGDLVAFYREAKKRFDEDEAFQATSREEV 225
Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 496
V LQ DP KAW ++CD SRR+FQKIYDRL++ L+ERGESFY ++ ++ L++ L
Sbjct: 226 VKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLSERGESFYNPYLASVLSGLKEADL 285
Query: 497 LELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI----EEEKADWI 547
L DDG + ++ G+D +P+ + KSDGGF Y T+DLAAIR R + + A +
Sbjct: 286 LVTDDGAECVFLEGVNGKDGKPLPVIVRKSDGGFNYATTDLAAIRYRFALAPDGDGARRV 345
Query: 548 VYVTDLGQGVHF 559
+YVTD GQ HF
Sbjct: 346 IYVTDAGQANHF 357
Score = 263 bits (671), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 155/353 (43%), Positives = 204/353 (57%), Gaps = 62/353 (17%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+ P+ L ++ + DL A
Sbjct: 143 STIIGDSLARVLEFRGHRVLRLNHVGDWGTQFGMLITHLKQVAPETLNRADAVDLGDLVA 202
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FY+E+KKRFDEDE F+ + + VV LQ DP KAW ++CD SRR+FQKIYDRL++ L+
Sbjct: 203 FYREAKKRFDEDEAFQATSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLS 262
Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSLT-----------------KKLGIV---------- 715
ERGESFY ++ ++ L K+ +L +T K L ++
Sbjct: 263 ERGESFYNPYLASVLSGL-KEADLLVTDDGAECVFLEGVNGKDGKPLPVIVRKSDGGFNY 321
Query: 716 -------------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVG 750
YVTD GQ HF + + AK+A + P R++ V
Sbjct: 322 ATTDLAAIRYRFALAPDGDGARRVIYVTDAGQANHFAGVFQVAKRANWI-PEHGRLEHVP 380
Query: 751 FGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE----LSEAQQ 806
FG+V GED KK KTRSGDTV+L +LLDE + R+ L + R E +E +
Sbjct: 381 FGLVQGEDGKKLKTRSGDTVRLRDLLDEAVERAEADL--RRRLEEEGRSEDDQFIEHVAG 438
Query: 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
V +KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G
Sbjct: 439 TVGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 491
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 11/162 (6%)
Query: 958 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
V +KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G DL
Sbjct: 440 VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLE- 494
Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
A++ + +E++L + LL+ + V+ V +L + LC YL+++S F+ FYD
Sbjct: 495 -AEAGMLQFSEPQEWSLVRELLKFDAVIAEVEEELLPNRLCSYLFELSQVFNRFYDQVPV 553
Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
++ AEG+ RL L TA +K +L I T+ +M
Sbjct: 554 LK--AEGQ---SLPSRLALCRLTADTLKSGLGLLGIATLERM 590
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 9 MSVRDYLSDVFTHAVQVAFPE---LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
+ + L A+Q AFP+ L D + A+ E FGDFQ N A+ L K K
Sbjct: 2 LRIAQALDTQLREAMQRAFPDVDALLDPQLAPANKPE-----FGDFQANGALPLAKPLKQ 56
Query: 66 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-SRVYAGEQMKDI 124
+ IA + L +P+ A + + + A PGF+N+ + A E +
Sbjct: 57 A---------PRLIAGAIVEALQADPAFAALCLEPQIAGPGFINLTIRPERLAAEVSARL 107
Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
+ P + V+VDFSSPNIA++
Sbjct: 108 GDPRLGVPEVQSDAAVVVDFSSPNIAKE 135
>sp|B2J6I0|SYR_NOSP7 Arginine--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 /
PCC 73102) GN=argS PE=3 SV=1
Length = 584
Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 159/328 (48%), Positives = 213/328 (64%), Gaps = 27/328 (8%)
Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEVAKP 301
KFGD+Q N A++L K K P IA +I + SE+ P E+A P
Sbjct: 38 KFGDYQANVALSLSKKLG-----KQPRAIAGAIVEKLDVSEICEPP---------EIAGP 83
Query: 302 GFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358
GF+N+ L Y Q+ DI + GV P R VDFSSPNIAKEMHVGHLRSTI
Sbjct: 84 GFINLKLKTAYLEAQLNDIQADPRLGV--PAAKTPKRENVDFSSPNIAKEMHVGHLRSTI 141
Query: 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYK 416
IGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +PD LT + I DL +FY+
Sbjct: 142 IGDSIARILEFQGHDVLRLNHVGDWGTQFGMLIAYLREVYPDALTTANALDIGDLVSFYR 201
Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 476
++K+RFD D F++ A Q VV LQ D AW+++C+ SRR+FQ IY+ L++ LTERG
Sbjct: 202 KAKQRFDTDTAFQETARQEVVRLQAGAEDTLHAWKLLCEQSRREFQVIYELLDIKLTERG 261
Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGE-----DRGSIPMTIVKSDGGFTYDTSD 531
ESFY + +V LEK GLL + G K ++ E + +P+ + KSDGG+ Y T+D
Sbjct: 262 ESFYNPLLSGIVEDLEKSGLLVENQGAKCVFLEGFTNREGEPLPLIVQKSDGGYNYATTD 321
Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHF 559
LA++R RI++++A I+YVTD GQG HF
Sbjct: 322 LASLRYRIQQDQAKRIIYVTDAGQGNHF 349
Score = 281 bits (719), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/348 (45%), Positives = 209/348 (60%), Gaps = 52/348 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLIA+L++ +PD LT + I DL +
Sbjct: 139 STIIGDSIARILEFQGHDVLRLNHVGDWGTQFGMLIAYLREVYPDALTTANALDIGDLVS 198
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FY+++K+RFD D F++ A Q VV LQ D AW+++C+ SRR+FQ IY+ L++ LT
Sbjct: 199 FYRKAKQRFDTDTAFQETARQEVVRLQAGAEDTLHAWKLLCEQSRREFQVIYELLDIKLT 258
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
ERGESFY + +V LEK G L T + G
Sbjct: 259 ERGESFYNPLLSGIVEDLEKSGLLVENQGAKCVFLEGFTNREGEPLPLIVQKSDGGYNYA 318
Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
I+YVTD GQG HF + A+KAG + P+ + V FG+VL
Sbjct: 319 TTDLASLRYRIQQDQAKRIIYVTDAGQGNHFAQFFQVARKAGWI-PDDVELVHVPFGLVL 377
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCI 813
GED KKFKTRSGDTV+L +LLDE + + LK + + E TE ++E + V +
Sbjct: 378 GEDGKKFKTRSGDTVRLRDLLDEAVSHAHADLKTRLQKEERQETEEFINEVARVVGISAV 437
Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGIN 861
KYADLS NR +Y+FS+DKMLD +GNTA Y+LY Y RI I+R IN
Sbjct: 438 KYADLSQNRTSNYIFSYDKMLDLKGNTAPYMLYVYARIHGISRKGDIN 485
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 114/185 (61%), Gaps = 11/185 (5%)
Query: 937 LKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYL 994
LK + + E TE ++E + V +KYADLS NR +Y+FS+DKMLD +GNTA Y+
Sbjct: 409 LKTRLQKEERQETEEFINEVARVVGISAVKYADLSQNRTSNYIFSYDKMLDLKGNTAPYM 468
Query: 995 LYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCL 1054
LY Y RI I+R IN ++L + V L+HE E ALAK LL++++V+ V +DL
Sbjct: 469 LYVYARIHGISRKGDINFKEL----GNNAVLLQHETELALAKYLLQLDEVISSVEQDLLP 524
Query: 1055 HHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIR 1114
+ LCEYL+++S F++FYD C ++ + + T RL+L + TA+ +K +L I+
Sbjct: 525 NRLCEYLFELSQKFNQFYDRCSILQAEEPQR-----TSRLVLCDLTARTLKLGLSLLGIQ 579
Query: 1115 TVHKM 1119
+ +M
Sbjct: 580 VLERM 584
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 20/110 (18%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEAAKP 105
KFGD+Q N A++L K K P IA +I + SE+ P E A P
Sbjct: 38 KFGDYQANVALSLSKKLG-----KQPRAIAGAIVEKLDVSEICEPP---------EIAGP 83
Query: 106 GFVNVFLSRVYAGEQMKDIIVN---GVQPPTLNKKLRVLVDFSSPNIARK 152
GF+N+ L Y Q+ DI + GV P R VDFSSPNIA++
Sbjct: 84 GFINLKLKTAYLEAQLNDIQADPRLGV--PAAKTPKRENVDFSSPNIAKE 131
>sp|B7JVP5|SYR_CYAP8 Arginine--tRNA ligase OS=Cyanothece sp. (strain PCC 8801) GN=argS
PE=3 SV=1
Length = 585
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/368 (44%), Positives = 226/368 (61%), Gaps = 35/368 (9%)
Query: 206 SVRDYLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
S+ + L++ F A+ AF E D V + KFGD+Q N A++L K GE
Sbjct: 3 SINEQLTNYFIQALVKAFGAEFSDIDPIVVPASNP---KFGDYQANIALSLAKKL---GE 56
Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIK------ 318
+ P IAQ I N SL + + +A PGF+N+ + Y Q+K
Sbjct: 57 Q--PRAIAQKIID--------NLSLEDLGELPTIAGPGFINIKIKPTYLATQLKVQQNSS 106
Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
+ V P +++VDFSSPNIAKEMHVGHLRSTIIGD I+R+LE GH V+RLN
Sbjct: 107 SLGVTKADPIE-----KIIVDFSSPNIAKEMHVGHLRSTIIGDCIARILEVRGHQVLRLN 161
Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESKKRFDEDEIFKKRAYQCV 436
HVGDWGTQFGMLIA+L + +PD LT + I DL FYK++KKRFDEDE F++ A V
Sbjct: 162 HVGDWGTQFGMLIAYLAEVYPDALTTADALDIGDLVTFYKQAKKRFDEDEKFQETARNQV 221
Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 496
V LQ D + AW+++C+ SRR+FQ IYD L++ +TERGESFY +E ++ L+ +GL
Sbjct: 222 VKLQAGDSQTRHAWQLLCEQSRREFQVIYDILDINITERGESFYNPLLEDIIKELDHQGL 281
Query: 497 LELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVT 551
L+ D G + ++ + +P+ + KSDGG+ Y T+DLAA++ RI +++A+ I+YVT
Sbjct: 282 LKKDAGAQCVFLDGFTNKSGDPLPLIVQKSDGGYNYATTDLAALKYRITQDQAERIIYVT 341
Query: 552 DLGQGVHF 559
D GQ HF
Sbjct: 342 DAGQANHF 349
Score = 273 bits (697), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 160/359 (44%), Positives = 208/359 (57%), Gaps = 60/359 (16%)
Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP- 616
H R STIIGD I+R+LE GH V+RLNHVGDWGTQFGMLIA+L + +PD LT +
Sbjct: 136 HLR----STIIGDCIARILEVRGHQVLRLNHVGDWGTQFGMLIAYLAEVYPDALTTADAL 191
Query: 617 -IADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYD 675
I DL FYK++KKRFDEDE F++ A VV LQ D + AW+++C+ SRR+FQ IYD
Sbjct: 192 DIGDLVTFYKQAKKRFDEDEKFQETARNQVVKLQAGDSQTRHAWQLLCEQSRREFQVIYD 251
Query: 676 RLNVTLTERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG---------- 713
L++ +TERGESFY +E ++ L+ +G L T K G
Sbjct: 252 ILDINITERGESFYNPLLEDIIKELDHQGLLKKDAGAQCVFLDGFTNKSGDPLPLIVQKS 311
Query: 714 -------------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDF 748
I+YVTD GQ HF + + AKKA I+ P +
Sbjct: 312 DGGYNYATTDLAALKYRITQDQAERIIYVTDAGQANHFAQVFQVAKKAHII-PKNVEIIH 370
Query: 749 VGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL---RRSLDK-LKDKNRHTELTPTELSEA 804
V FG+V GED KK KTRSG T+KL +LLDE + R+ L+K L ++ R + ++
Sbjct: 371 VPFGLVKGEDGKKLKTRSGTTIKLRDLLDEAVIYARQDLEKRLAEEGRQE--SEDFIANV 428
Query: 805 QQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
Q V +KYADLS NR DY+FS+DKML +GNTA Y+LYAY RI SI+R I+ E
Sbjct: 429 SQVVGISAVKYADLSQNRTSDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNIDFE 487
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 103/169 (60%), Gaps = 8/169 (4%)
Query: 951 LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
++ Q V +KYADLS NR DY+FS+DKML +GNTA Y+LYAY RI SI+R I
Sbjct: 425 IANVSQVVGISAVKYADLSQNRTSDYIFSYDKMLALQGNTAPYMLYAYARIQSISREGNI 484
Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
+ E L+ Q + L+ E E L K LL++++V+ V + L + LC+YLY++S F+
Sbjct: 485 DFESLQ---QEAKIILQEETEIELGKYLLQLSEVIEEVEKTLLPNRLCDYLYELSKKFNR 541
Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
FY+NC ++ + + + T RLLL + TA+ +K +L I + +M
Sbjct: 542 FYENCPVLKSE-----EPLRTSRLLLCDLTARTLKLGLSLLGIPVLERM 585
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 30/151 (19%)
Query: 10 SVRDYLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
S+ + L++ F A+ AF E D V + KFGD+Q N A++L K GE
Sbjct: 3 SINEQLTNYFIQALVKAFGAEFSDIDPIVVPASNP---KFGDYQANIALSLAKKL---GE 56
Query: 69 KKNPFDIAQSIASVVTSE-LATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMK----- 122
+ P IAQ I ++ E L P++A PGF+N+ + Y Q+K
Sbjct: 57 Q--PRAIAQKIIDNLSLEDLGELPTIAG---------PGFINIKIKPTYLATQLKVQQNS 105
Query: 123 -DIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
+ V P +++VDFSSPNIA++
Sbjct: 106 SSLGVTKADPIE-----KIIVDFSSPNIAKE 131
>sp|Q9PJT8|SYR_CHLMU Arginine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=argS PE=3 SV=1
Length = 563
Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/395 (40%), Positives = 235/395 (59%), Gaps = 34/395 (8%)
Query: 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 265
++ +L+ + + A++ AFPEL + T + + +++ FG +QCNDAM L + +
Sbjct: 3 TLLSFLTSLCSSAIRQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARALR----- 54
Query: 266 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 325
K+P IA+ I + + A IE+A GF+N S+ + Q++
Sbjct: 55 KSPRAIAEEIVAHIP---------ATPFSSIEIAGAGFINFTFSKEFLANQLQIFSQELA 105
Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
+ ++ +V++DFSSPNIAK+MHVGHLRSTIIGD ++R ++GHDV+RLNH+GDWGT
Sbjct: 106 KGFPVSSPQKVIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGDWGT 165
Query: 386 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445
FGMLI +LQ+ T + +L YK++ RF ED FKKR+ VVALQ DP
Sbjct: 166 AFGMLITYLQETAQ---TDIHQLENLTELYKKAHVRFAEDPEFKKRSQYNVVALQSGDPQ 222
Query: 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI 505
W+ IC VS + FQKIY L+V L RGESFY + +V LE K L+ L DG K
Sbjct: 223 ALALWKQICAVSEKSFQKIYSILDVELHTRGESFYNPFLADVVSDLESKNLVTLSDGAKC 282
Query: 506 MWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEES 565
++ E+ SIP+ I KSDGG+ Y T+D+AA+R RI+++ AD I+ VTD GQ +HF+LLE +
Sbjct: 283 VFHEEF-SIPLMIQKSDGGYNYATTDVAAMRYRIQQDHADRILIVTDSGQSLHFQLLEAT 341
Query: 566 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLI 600
+ YL H + +HVG FG+++
Sbjct: 342 CLAAG-------YLPHKGI-FSHVG-----FGLVL 363
Score = 233 bits (593), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 139/339 (41%), Positives = 184/339 (54%), Gaps = 47/339 (13%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIGD ++R ++GHDV+RLNH+GDWGT FGMLI +LQ+ T + +L Y
Sbjct: 136 STIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETAQ---TDIHQLENLTELY 192
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
K++ RF ED FKKR+ VVALQ DP W+ IC VS + FQKIY L+V L R
Sbjct: 193 KKAHVRFAEDPEFKKRSQYNVVALQSGDPQALALWKQICAVSEKSFQKIYSILDVELHTR 252
Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
GESFY + +V LE K ++L+ V+
Sbjct: 253 GESFYNPFLADVVSDLESKNLVTLSDGAKCVFHEEFSIPLMIQKSDGGYNYATTDVAAMR 312
Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
VTD GQ +HF+LLE AG L P+K VGFG+VL +KFK
Sbjct: 313 YRIQQDHADRILIVTDSGQSLHFQLLEATCLAAGYL-PHKGIFSHVGFGLVLDTQGRKFK 371
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+ +KL ELLD + ++ + L++ E++ EL+ + IKYADLS +R
Sbjct: 372 TRSGENIKLQELLDTAIEKAKESLREHR--PEISEEELAYQGPILGINAIKYADLSAHRI 429
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
DYVFSF+KML GNTA+ LLYAY RI I R +++
Sbjct: 430 NDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMKLDT 468
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 930 LRRSLDKLKDKNRH--TELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDR 987
L +++K K+ R E++ EL+ + IKYADLS +R DYVFSF+KML
Sbjct: 384 LDTAIEKAKESLREHRPEISEEELAYQGPILGINAIKYADLSAHRINDYVFSFEKMLRFE 443
Query: 988 GNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLML 1047
GNTA+ LLYAY RI I R +++ Q P+S+ E LA TLLR +VL L
Sbjct: 444 GNTAMSLLYAYVRIQGIKRRMKLDT-----LPQKGPLSIHEPAEETLALTLLRFPEVLDL 498
Query: 1048 VTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107
R+LC H L +YLY ++ F+ F+ +C+ D + + RL L T K ++
Sbjct: 499 TLRELCPHFLTDYLYVLTNKFNAFFRDCHIEGSDYQQE-------RLYLCGLTEKTLETG 551
Query: 1108 FDILNIRTV 1116
+L ++T+
Sbjct: 552 MHLLGLKTL 560
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 17/142 (11%)
Query: 10 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
++ +L+ + + A++ AFPEL + T + + +++ FG +QCNDAM L + +
Sbjct: 3 TLLSFLTSLCSSAIRQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARAL-----R 54
Query: 70 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGV 129
K+P IA+ I + + A IE A GF+N S+ + Q++
Sbjct: 55 KSPRAIAEEIVAHIP---------ATPFSSIEIAGAGFINFTFSKEFLANQLQIFSQELA 105
Query: 130 QPPTLNKKLRVLVDFSSPNIAR 151
+ ++ +V++DFSSPNIA+
Sbjct: 106 KGFPVSSPQKVIIDFSSPNIAK 127
>sp|A5GP97|SYR_SYNPW Arginine--tRNA ligase OS=Synechococcus sp. (strain WH7803) GN=argS
PE=3 SV=1
Length = 597
Score = 286 bits (732), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 152/329 (46%), Positives = 209/329 (63%), Gaps = 21/329 (6%)
Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
+FGDFQ N A+AL K K + IA+ + ++L +P+ + + ++A PG
Sbjct: 45 EFGDFQANGALALAKPLKQA---------PRQIATAIVAQLQADPAFTDLCLEPQIAGPG 95
Query: 303 FVNVFL-SRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
F+N+ + A E + + P + + V+VDFSSPNIAKEMHVGHLRSTIIGD
Sbjct: 96 FINLTVRPERLAAEVSARLGDQRLGVPAVEQAAPVVVDFSSPNIAKEMHVGHLRSTIIGD 155
Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESK 419
+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+ PD L + + DL AFY+E+K
Sbjct: 156 SLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPDALDTADAVDLGDLVAFYREAK 215
Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESF 479
KRFD+DE F+ + + VV LQ DP KAW ++CD SRR+FQKIYDRL++ L ERGESF
Sbjct: 216 KRFDDDEAFQTTSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLNERGESF 275
Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
Y + ++ L+ LL DDG + ++ G+D +P+ + KSDGGF Y T+DLAA
Sbjct: 276 YNPFLPAVIDGLKDAELLVTDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYATTDLAA 335
Query: 535 IRQRI----EEEKADWIVYVTDLGQGVHF 559
IR R + + A ++YVTD GQ HF
Sbjct: 336 IRYRFGAAPDGDDARRVIYVTDAGQANHF 364
Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/350 (42%), Positives = 203/350 (58%), Gaps = 56/350 (16%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+ PD L + + DL A
Sbjct: 150 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPDALDTADAVDLGDLVA 209
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FY+E+KKRFD+DE F+ + + VV LQ DP KAW ++CD SRR+FQKIYDRL++ L
Sbjct: 210 FYREAKKRFDDDEAFQTTSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLN 269
Query: 683 ERGESFYQKHMEQLV-------------------------------PYLEKKGN------ 705
ERGESFY + ++ P + +K +
Sbjct: 270 ERGESFYNPFLPAVIDGLKDAELLVTDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYA 329
Query: 706 ----LSLTKKLG----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
++ + G ++YVTD GQ HF + + A++AG + P R++ V F
Sbjct: 330 TTDLAAIRYRFGAAPDGDDARRVIYVTDAGQANHFAGVFQVAQRAGWI-PEGARLEHVPF 388
Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
G+V GED KK KTR+GDTV+L +LLDE + R+ L+ + E + +E + V
Sbjct: 389 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERAETDLRSRLNEEERSESEEFIQHVAGTVG 448
Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
+KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G
Sbjct: 449 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 498
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 89/162 (54%), Gaps = 11/162 (6%)
Query: 958 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
V +KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G DL V
Sbjct: 447 VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLEV 502
Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
+ + +E+AL + LL+ + V+ V +L + LC YL+++S F+ FYD
Sbjct: 503 L--TGQLQFSEPQEWALVRELLKFDAVIAEVEEELLPNRLCSYLFELSQVFNRFYDQVPV 560
Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
++ DAE RL L TA +K +L I T+ +M
Sbjct: 561 LKADAEA-----LPSRLALCRLTADTLKSGLGLLGIPTLDRM 597
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
+FGDFQ N A+AL K K + IA+ + ++L +P+ + + + A PG
Sbjct: 45 EFGDFQANGALALAKPLKQA---------PRQIATAIVAQLQADPAFTDLCLEPQIAGPG 95
Query: 107 FVNVFL-SRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
F+N+ + A E + + P + + V+VDFSSPNIA++
Sbjct: 96 FINLTVRPERLAAEVSARLGDQRLGVPAVEQAAPVVVDFSSPNIAKE 142
>sp|Q5L6U4|SYR_CHLAB Arginine--tRNA ligase OS=Chlamydophila abortus (strain S26/3)
GN=argS PE=3 SV=1
Length = 562
Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 227/368 (61%), Gaps = 31/368 (8%)
Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
M++ YLS + A+ AFP++ + + + ++ FG +QCNDAM L + K
Sbjct: 1 MTLLSYLSSLCREAILSAFPQIETISPDITQSTKEL---FGHYQCNDAMKLARTLK---- 53
Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---I 321
P IA+SI ++ IE+A GF+N S+ + ++ +
Sbjct: 54 -MPPRAIAESIVKQISK---------NNFSSIEIAGAGFINFTFSKEFLNLSLQSYSRDL 103
Query: 322 VNG--VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNH 379
+G VQ P +V++DFSSPNIAK+MHVGHLRSTIIGD ++R+ ++GHDV+RLNH
Sbjct: 104 SSGFRVQDPK-----KVVIDFSSPNIAKDMHVGHLRSTIIGDCLARIFTFVGHDVLRLNH 158
Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
+GDWGT FGMLI +LQ++ + + + DL YK++ RF ED FKKR+ VVAL
Sbjct: 159 IGDWGTAFGMLITYLQEESSEDIES---LEDLTILYKKAHVRFAEDAEFKKRSQTNVVAL 215
Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
Q DP +K WE IC++S R FQKIY+ L++ + +RGESFY + +++ LEKK L+ +
Sbjct: 216 QSGDPKARKLWERICEISERAFQKIYNILDIQIEKRGESFYNPFLPEIIEDLEKKNLITV 275
Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHF 559
D K ++ E SIP+ + K DGG+ Y T+DLAA+R R+E++ AD I+ VTD+GQ +HF
Sbjct: 276 SDEAKCVFHEG-FSIPLMVQKRDGGYNYATTDLAAMRYRVEQDHADRIIIVTDMGQSLHF 334
Query: 560 RLLEESTI 567
+LLE + +
Sbjct: 335 QLLEATAL 342
Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 202/337 (59%), Gaps = 47/337 (13%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIGD ++R+ ++GHDV+RLNH+GDWGT FGMLI +LQ++ + + + DL Y
Sbjct: 135 STIIGDCLARIFTFVGHDVLRLNHIGDWGTAFGMLITYLQEESSEDIES---LEDLTILY 191
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
K++ RF ED FKKR+ VVALQ DP +K WE IC++S R FQKIY+ L++ + +R
Sbjct: 192 KKAHVRFAEDAEFKKRSQTNVVALQSGDPKARKLWERICEISERAFQKIYNILDIQIEKR 251
Query: 685 GESFYQKHMEQLVPYLEKKGNLSLT------------------KKLG------------- 713
GESFY + +++ LEKK ++++ K+ G
Sbjct: 252 GESFYNPFLPEIIEDLEKKNLITVSDEAKCVFHEGFSIPLMVQKRDGGYNYATTDLAAMR 311
Query: 714 ----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
I+ VTD+GQ +HF+LLE A AG L PNK VGFG+VL + KKFK
Sbjct: 312 YRVEQDHADRIIIVTDMGQSLHFQLLEATALAAGYL-PNKDVFSHVGFGLVLDSEGKKFK 370
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+ +KL ELLD + +++ LK K+R E++ E++E + IKYADLS +R
Sbjct: 371 TRSGENIKLQELLDTAIDQAVATLK-KHR-PEMSDAEITERAPVLGMNAIKYADLSSHRV 428
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
DYVFSF+KML GNTA+++LY Y RI I R GI
Sbjct: 429 SDYVFSFEKMLRFEGNTAMFILYGYVRIQGIKRRLGI 465
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 12/180 (6%)
Query: 940 KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
K E++ E++E + IKYADLS +R DYVFSF+KML GNTA+++LY Y
Sbjct: 395 KKHRPEMSDAEITERAPVLGMNAIKYADLSSHRVSDYVFSFEKMLRFEGNTAMFILYGYV 454
Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
RI I R GI L AA +++ E ALA LLR + + + ++LC H L +
Sbjct: 455 RIQGIKRRLGIEKLSLESAA-----NIQEPSEEALALALLRFPEAIDITLKELCPHFLTD 509
Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
YLY ++ F F+ +C+ IE K RL L K + +L ++T+ ++
Sbjct: 510 YLYMLTNKFHAFFRDCH-IEGSPHQK------ERLYLCALVEKTLATGMHLLGLQTLDRL 562
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
M++ YLS + A+ AFP++ + + + ++ FG +QCNDAM L +
Sbjct: 1 MTLLSYLSSLCREAILSAFPQIETISPDITQSTKEL---FGHYQCNDAMKLARTL----- 52
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDI---I 125
K P IA+SI ++ IE A GF+N S+ + ++ +
Sbjct: 53 KMPPRAIAESIVKQISK---------NNFSSIEIAGAGFINFTFSKEFLNLSLQSYSRDL 103
Query: 126 VNG--VQPPTLNKKLRVLVDFSSPNIAR 151
+G VQ P +V++DFSSPNIA+
Sbjct: 104 SSGFRVQDPK-----KVVIDFSSPNIAK 126
>sp|Q3M769|SYR_ANAVT Arginine--tRNA ligase OS=Anabaena variabilis (strain ATCC 29413 /
PCC 7937) GN=argS PE=3 SV=1
Length = 588
Score = 285 bits (729), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 209/351 (59%), Gaps = 52/351 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQA 622
STIIGD+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++ P+ LT + I DL +
Sbjct: 139 STIIGDSIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVSPEALTTANALDIGDLVS 198
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FY+++K+RFD DE F++ A Q VV LQ D AW+++C+ SR++FQ IYD L+V LT
Sbjct: 199 FYRQAKQRFDADEAFQETARQEVVRLQAGATDTLHAWKLLCEQSRQEFQVIYDLLDVKLT 258
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
ERGESFY + +V LE G L T + G
Sbjct: 259 ERGESFYNPLLPTVVEGLEASGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNYA 318
Query: 714 ------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVL 755
IVYVTD GQ HF + A+KAG + PN + V FG+VL
Sbjct: 319 TTDLAALRYRIQKDEAKRIVYVTDAGQANHFAQFFQVARKAGWI-PNDVELVHVPFGLVL 377
Query: 756 GEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKD--KNRHTELTPTELSEAQQAVAYGCI 813
GED KKFKTRSGDTV+L +LLDE + R+ L++ K E TP + + + V +
Sbjct: 378 GEDGKKFKTRSGDTVRLRDLLDEAVSRAHADLEERLKAEEREETPEFIDKVAEVVGISAV 437
Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED 864
KYADLS NR +Y+FS+DKMLD +GNTA Y+LYAY RI I+R GIN D
Sbjct: 438 KYADLSQNRTSNYIFSYDKMLDLKGNTAPYMLYAYARIQGISRKGGINFAD 488
Score = 284 bits (727), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 152/325 (46%), Positives = 211/325 (64%), Gaps = 21/325 (6%)
Query: 243 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 302
KFGD+Q N A++L K ++IAS + +L ++++ + E+A PG
Sbjct: 38 KFGDYQANVALSLSKKLGQP---------PRAIASAIVEKL----DVSEICETPEIAGPG 84
Query: 303 FVNVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361
F+N+ L Y Q+ I + + PT R +VDFSSPNIAKEMHVGHLRSTIIGD
Sbjct: 85 FINLKLKTAYLEAQLNAIQADSRLGVPTAKHPQREIVDFSSPNIAKEMHVGHLRSTIIGD 144
Query: 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPP--IADLQAFYKESK 419
+I+R+LE+ GHDV+RLNHVGDWGTQFGMLI +L++ P+ LT + I DL +FY+++K
Sbjct: 145 SIARILEFRGHDVLRLNHVGDWGTQFGMLITYLREVSPEALTTANALDIGDLVSFYRQAK 204
Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESF 479
+RFD DE F++ A Q VV LQ D AW+++C+ SR++FQ IYD L+V LTERGESF
Sbjct: 205 QRFDADEAFQETARQEVVRLQAGATDTLHAWKLLCEQSRQEFQVIYDLLDVKLTERGESF 264
Query: 480 YQKHMEQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAA 534
Y + +V LE GLL + G K ++ + +P+ + KSDGG+ Y T+DLAA
Sbjct: 265 YNPLLPTVVEGLEASGLLVENQGAKCVFLDGFTNREGEPLPLIVQKSDGGYNYATTDLAA 324
Query: 535 IRQRIEEEKADWIVYVTDLGQGVHF 559
+R RI++++A IVYVTD GQ HF
Sbjct: 325 LRYRIQKDEAKRIVYVTDAGQANHF 349
Score = 143 bits (360), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 115/186 (61%), Gaps = 9/186 (4%)
Query: 935 DKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYL 994
++LK + R E TP + + + V +KYADLS NR +Y+FS+DKMLD +GNTA Y+
Sbjct: 411 ERLKAEER--EETPEFIDKVAEVVGISAVKYADLSQNRTSNYIFSYDKMLDLKGNTAPYM 468
Query: 995 LYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCL 1054
LYAY RI I+R GIN DL + V L+H+ EFALAK LL++ +V+ V DL
Sbjct: 469 LYAYARIQGISRKGGINFADL---GDNAKVILQHDTEFALAKYLLQLGEVISTVEADLLP 525
Query: 1055 HHLCEYLYDISTAFSEFYDNCYCIEK-DAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113
+ LCEYLY++S F+ FYD ++ AE + + T RL+L + TA+ +K +L I
Sbjct: 526 NRLCEYLYELSKKFNTFYDRNQGVQVLSAE---EPLRTSRLVLCDLTARTLKLGLSLLGI 582
Query: 1114 RTVHKM 1119
+ + +M
Sbjct: 583 QVLERM 588
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPG 106
KFGD+Q N A++L K ++IAS + +L ++++ + E A PG
Sbjct: 38 KFGDYQANVALSLSKKLGQP---------PRAIASAIVEKL----DVSEICETPEIAGPG 84
Query: 107 FVNVFLSRVYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARK 152
F+N+ L Y Q+ I + + PT R +VDFSSPNIA++
Sbjct: 85 FINLKLKTAYLEAQLNAIQADSRLGVPTAKHPQREIVDFSSPNIAKE 131
>sp|Q7U3V8|SYR_SYNPX Arginine--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=argS
PE=3 SV=1
Length = 597
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/370 (43%), Positives = 221/370 (59%), Gaps = 29/370 (7%)
Query: 205 MSVRDYLSDVFTHAVQVAFP---ELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
+S+ + L A+Q AFP + D + AS E FGDFQ N A+ L K K
Sbjct: 9 LSLSNTLDAQLRAAMQRAFPVADAVLDPQLAPASKPE-----FGDFQANGALPLAKPLKQ 63
Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL-SRVYAGEQIKDI 320
+ IA+ + +L + + + ++A PGF+N+ + A E +
Sbjct: 64 A---------PRQIATAIVEQLQADSGFTDLCLEPQIAGPGFINLTIRPERLAAEVSARL 114
Query: 321 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
+ P + + V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLNHV
Sbjct: 115 GDERLGVPAVEQAAPVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHTVLRLNHV 174
Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
GDWGTQFGMLI HL+ PD L + + DL AFY+E+KKRFD+DE F+ + + VV
Sbjct: 175 GDWGTQFGMLITHLKQVAPDALETADAVDLGDLVAFYREAKKRFDDDEAFQSTSREEVVK 234
Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
LQ DP KAW ++CD SRR+FQKIYDRL++ L ERGESFY + ++ L+ LL
Sbjct: 235 LQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLNERGESFYNPFLPAVIDGLKAAELLV 294
Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI----EEEKADWIVY 549
DDG + ++ G+D +P+ + KSDGGF Y T+DLAAIR R + + A +VY
Sbjct: 295 TDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYATTDLAAIRYRFGAAPDGDGARRVVY 354
Query: 550 VTDLGQGVHF 559
VTD GQ HF
Sbjct: 355 VTDAGQANHF 364
Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 205/350 (58%), Gaps = 56/350 (16%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+ PD L + + DL A
Sbjct: 150 STIIGDSLARVLEFRGHTVLRLNHVGDWGTQFGMLITHLKQVAPDALETADAVDLGDLVA 209
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FY+E+KKRFD+DE F+ + + VV LQ DP KAW ++CD SRR+FQKIYDRL++ L
Sbjct: 210 FYREAKKRFDDDEAFQSTSREEVVKLQGGDPVSLKAWGLLCDQSRREFQKIYDRLDIRLN 269
Query: 683 ERGESFYQKHMEQLV-------------------------------PYLEKKGN------ 705
ERGESFY + ++ P + +K +
Sbjct: 270 ERGESFYNPFLPAVIDGLKAAELLVTDDGAQCVFLEGVQGKDGKPLPVIVQKSDGGFNYA 329
Query: 706 ----LSLTKKLG----------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
++ + G +VYVTD GQ HF + + A++AG + P+ R++ V F
Sbjct: 330 TTDLAAIRYRFGAAPDGDGARRVVYVTDAGQANHFAGVFQVAERAGWI-PDGARLEHVPF 388
Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
G+V GED KK KTR+GDTV+L +LLDE + R+ L+ + + E + +E + V
Sbjct: 389 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERAETDLRSRLKEEERSESEEFIQNVAGTVG 448
Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
+KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G
Sbjct: 449 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 498
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 11/162 (6%)
Query: 958 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
V +KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G DL V
Sbjct: 447 VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLEV 502
Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
+ + + +E+AL + LL+ + V+ V +L + LC YL+++S F+ FYD
Sbjct: 503 S--TGQLQFSEPQEWALVRELLKFDSVIAEVEEELLPNRLCSYLFELSQVFNRFYDQVPV 560
Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
++ D E RL L TA ++ +L I T+ +M
Sbjct: 561 LKADPEA-----LASRLALCRLTADTLRLGLGLLGIATLDRM 597
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 18/148 (12%)
Query: 9 MSVRDYLSDVFTHAVQVAFP---ELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
+S+ + L A+Q AFP + D + AS E FGDFQ N A+ L K K
Sbjct: 9 LSLSNTLDAQLRAAMQRAFPVADAVLDPQLAPASKPE-----FGDFQANGALPLAKPLKQ 63
Query: 66 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL-SRVYAGEQMKDI 124
+ IA+ + +L + + + + A PGF+N+ + A E +
Sbjct: 64 A---------PRQIATAIVEQLQADSGFTDLCLEPQIAGPGFINLTIRPERLAAEVSARL 114
Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
+ P + + V+VDFSSPNIA++
Sbjct: 115 GDERLGVPAVEQAAPVVVDFSSPNIAKE 142
>sp|Q253D1|SYR_CHLFF Arginine--tRNA ligase OS=Chlamydophila felis (strain Fe/C-56)
GN=argS PE=3 SV=1
Length = 562
Score = 283 bits (725), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 158/403 (39%), Positives = 240/403 (59%), Gaps = 34/403 (8%)
Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
M++ YLS + A AFP++ + + + + +++ FG +QCNDAM L D+
Sbjct: 1 MTLLSYLSSLCREATLSAFPQVENPSPDITQSTKEH---FGHYQCNDAMKL-----DRTL 52
Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
K P IA++I + + + +EVA GF+N S+ + ++++ +
Sbjct: 53 KMAPRAIAEAIVNNLPKD---------NFSSVEVAGAGFINFTFSKEFLKQRLETFSADL 103
Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
+ ++++DFSSPNIAK+MHVGHLRSTIIGD ++R+ ++G+DV+RLNH+GDWG
Sbjct: 104 SSGFCVKDPKKIVIDFSSPNIAKDMHVGHLRSTIIGDCLARVFSFVGNDVLRLNHIGDWG 163
Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
T FGMLI +LQ++ + + + DL A YK++ RF ED FKKR+ VVALQ DP
Sbjct: 164 TAFGMLITYLQEEASEDVGN---LEDLTALYKKAHARFAEDVEFKKRSQANVVALQSGDP 220
Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
W+ IC++S R FQKIYD L V + +RGESFY + +++ LE K L+ + D K
Sbjct: 221 SALNLWKHICEISERAFQKIYDILGVAIEKRGESFYNPFLPEIIQDLENKKLITVSDNAK 280
Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
++ E SIP+ + KSDGG+ Y T+DLAA+R R+E++ AD I+ VTD+GQ +HF+LLE
Sbjct: 281 CVFHEGF-SIPLMVQKSDGGYNYATTDLAAMRYRVEKDHADKIIIVTDMGQSLHFQLLEA 339
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607
+ + YL D +HVG FG+++ KF
Sbjct: 340 TALAAG-------YL-RDKETFSHVG-----FGLVLDSEGKKF 369
Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/337 (41%), Positives = 193/337 (57%), Gaps = 47/337 (13%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIGD ++R+ ++G+DV+RLNH+GDWGT FGMLI +LQ++ + + + DL A Y
Sbjct: 135 STIIGDCLARVFSFVGNDVLRLNHIGDWGTAFGMLITYLQEEASEDVGN---LEDLTALY 191
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
K++ RF ED FKKR+ VVALQ DP W+ IC++S R FQKIYD L V + +R
Sbjct: 192 KKAHARFAEDVEFKKRSQANVVALQSGDPSALNLWKHICEISERAFQKIYDILGVAIEKR 251
Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
GESFY + +++ LE K ++++ V+
Sbjct: 252 GESFYNPFLPEIIQDLENKKLITVSDNAKCVFHEGFSIPLMVQKSDGGYNYATTDLAAMR 311
Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
VTD+GQ +HF+LLE A AG L +T VGFG+VL + KKFK
Sbjct: 312 YRVEKDHADKIIIVTDMGQSLHFQLLEATALAAGYLRDKET-FSHVGFGLVLDSEGKKFK 370
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+ +KL ELL+ + +++ LK+ E++ E+S+ + IKYADLS +R
Sbjct: 371 TRSGENIKLKELLNTAVDQAVATLKE--HRPEMSEEEISQRAPILGINAIKYADLSSHRV 428
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860
DYVFSF+KML GNTA++LLYAY RI I R I
Sbjct: 429 SDYVFSFEKMLRFEGNTAMFLLYAYVRIQGIKRRLNI 465
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 940 KNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYT 999
K E++ E+S+ + IKYADLS +R DYVFSF+KML GNTA++LLYAY
Sbjct: 395 KEHRPEMSEEEISQRAPILGINAIKYADLSSHRVSDYVFSFEKMLRFEGNTAMFLLYAYV 454
Query: 1000 RIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCE 1059
RI I R +N E L + A V+++ E ALA LLR + + + ++LC H L +
Sbjct: 455 RIQGIKRR--LNIEKLNLEA---VVNIQEPAEEALALALLRFPEAIDVTLKELCPHFLTD 509
Query: 1060 YLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
YLY ++ F+ F+ +C+ EG RL L K + +L ++T+ ++
Sbjct: 510 YLYMLTNKFNAFFRDCHI-----EG--SPYQQERLYLCALVEKTLATGMHLLGLQTLDRL 562
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
M++ YLS + A AFP++ + + + + +++ FG +QCNDAM L D+
Sbjct: 1 MTLLSYLSSLCREATLSAFPQVENPSPDITQSTKEH---FGHYQCNDAMKL-----DRTL 52
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
K P IA++I + + + +E A GF+N S+ + ++++ +
Sbjct: 53 KMAPRAIAEAIVNNLPKD---------NFSSVEVAGAGFINFTFSKEFLKQRLETFSADL 103
Query: 129 VQPPTLNKKLRVLVDFSSPNIAR 151
+ ++++DFSSPNIA+
Sbjct: 104 SSGFCVKDPKKIVIDFSSPNIAK 126
>sp|A9BDF0|SYR_PROM4 Arginine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9211)
GN=argS PE=3 SV=1
Length = 603
Score = 283 bits (723), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 163/365 (44%), Positives = 227/365 (62%), Gaps = 32/365 (8%)
Query: 218 AVQVAFPELG-DKTASVASTNEKYVH----KFGDFQCNDAMALCKIFKDKGEKKNPFDIA 272
A++ AFP+ S S N + V +FGDFQ N A+AL KI K K P IA
Sbjct: 15 ALEAAFPQASLVAKQSGQSLNPQLVPATKPEFGDFQVNGALALSKILK-----KAPRKIA 69
Query: 273 QSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI------KDIIVNGVQ 326
+ I +L N K+ K E+A PGF+N+ + +I + V +
Sbjct: 70 EEI----IKQLVKNDDFNKLCLKPEIAGPGFINLTIQNSCLTTEICARLNDDHLGVPIAK 125
Query: 327 PPTLNKKLR-VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385
P +K L+ ++VDFSSPNIAKEMHVGHLRSTIIGD+I+R+LE+ GH V+RLNHVGDWGT
Sbjct: 126 PLKTHKSLKPIVVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFRGHPVLRLNHVGDWGT 185
Query: 386 QFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443
QFGMLI +L+ P+ LT + I DL FY+++KK FDEDE F+ + + VV LQ D
Sbjct: 186 QFGMLITYLKLVAPEALTTANAINLGDLVKFYRQAKKLFDEDETFQDASREEVVRLQNGD 245
Query: 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGR 503
P KAW+++CD SR +F+KIY RL++ +TERGESFY ++++ ++ L+ LL D+G
Sbjct: 246 PQSLKAWQLLCDQSRIEFEKIYKRLDIHITERGESFYNQYLQDVIDDLKSTNLLVTDNGA 305
Query: 504 KIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEE----EKADWIVYVTDLG 554
K ++ G+D +P+ + K+DGGF Y T+DLAAIR R++ + A ++YVTD G
Sbjct: 306 KCIFLDDITGKDGKPLPLIVQKTDGGFNYATTDLAAIRYRLQAYPQGDGACRLIYVTDAG 365
Query: 555 QGVHF 559
Q HF
Sbjct: 366 QASHF 370
Score = 253 bits (646), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 148/351 (42%), Positives = 206/351 (58%), Gaps = 58/351 (16%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STIIGD+I+R+LE+ GH V+RLNHVGDWGTQFGMLI +L+ P+ LT + I DL
Sbjct: 156 STIIGDSIARVLEFRGHPVLRLNHVGDWGTQFGMLITYLKLVAPEALTTANAINLGDLVK 215
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FY+++KK FDEDE F+ + + VV LQ DP KAW+++CD SR +F+KIY RL++ +T
Sbjct: 216 FYRQAKKLFDEDETFQDASREEVVRLQNGDPQSLKAWQLLCDQSRIEFEKIYKRLDIHIT 275
Query: 683 ERGESFYQKHMEQLVPYLEKKGNLSLT-----------------KKLGIV---------- 715
ERGESFY ++++ ++ L K NL +T K L ++
Sbjct: 276 ERGESFYNQYLQDVIDDL-KSTNLLVTDNGAKCIFLDDITGKDGKPLPLIVQKTDGGFNY 334
Query: 716 -------------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVG 750
YVTD GQ HF + + A++A + PN R++ V
Sbjct: 335 ATTDLAAIRYRLQAYPQGDGACRLIYVTDAGQASHFFAVFQVARRANWI-PNDCRIEHVP 393
Query: 751 FGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK-NRHTELTPTE-LSEAQQAV 808
FG+V GED KK KTRSGDTV+L +LLDE + R+ + L+++ N E +++ + +
Sbjct: 394 FGLVQGEDGKKLKTRSGDTVRLKDLLDEAIIRAKNDLEERLNAEGRKEDQEFINKVSRVI 453
Query: 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
+KYADLS NR +Y FSF++ML +GNTA YLLYA RIA I R G
Sbjct: 454 GIAAVKYADLSQNRITNYQFSFNRMLALQGNTAPYLLYALVRIAGINRKGG 504
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 94/169 (55%), Gaps = 11/169 (6%)
Query: 951 LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 1010
+++ + + +KYADLS NR +Y FSF++ML +GNTA YLLYA RIA I R G
Sbjct: 446 INKVSRVIGIAAVKYADLSQNRITNYQFSFNRMLALQGNTAPYLLYALVRIAGINRKGG- 504
Query: 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070
+ A ++ +E+ LA+ LL+ ++V++ V +L + LC YL+++S F+
Sbjct: 505 -----SLNATINKLTFNEPQEWMLARELLKFDEVILQVEEELLPNRLCNYLFELSQVFNR 559
Query: 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
FYD ++ + ++ RL L + TA +K +L I T+ +M
Sbjct: 560 FYDQVPVLKAN-----DSLKASRLALCQLTADTIKLGLKLLGIPTLDRM 603
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 21/143 (14%)
Query: 22 AVQVAFPELG-DKTASVASTNEKYVH----KFGDFQCNDAMALCKIFKDKGEKKNPFDIA 76
A++ AFP+ S S N + V +FGDFQ N A+AL KI KK P IA
Sbjct: 15 ALEAAFPQASLVAKQSGQSLNPQLVPATKPEFGDFQVNGALALSKIL-----KKAPRKIA 69
Query: 77 QSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFL------SRVYAGEQMKDIIVNGVQ 130
+ I +L N K+ K E A PGF+N+ + + + A + V +
Sbjct: 70 EEI----IKQLVKNDDFNKLCLKPEIAGPGFINLTIQNSCLTTEICARLNDDHLGVPIAK 125
Query: 131 PPTLNKKLR-VLVDFSSPNIARK 152
P +K L+ ++VDFSSPNIA++
Sbjct: 126 PLKTHKSLKPIVVDFSSPNIAKE 148
>sp|Q824H4|SYR_CHLCV Arginine--tRNA ligase OS=Chlamydophila caviae (strain GPIC) GN=argS
PE=3 SV=1
Length = 564
Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/363 (40%), Positives = 221/363 (60%), Gaps = 21/363 (5%)
Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
M++ YLS + A AFP++ + + + +++ FG +QCNDAM L + K
Sbjct: 3 MTLLSYLSSLCREATLSAFPQIDTFSPDITQSTKEH---FGHYQCNDAMKLARTLK---- 55
Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 324
P IA++I + + E+ T+ IE+A GF+N S+ + +K
Sbjct: 56 -MAPRAIAEAIVNHIPKEIFTS---------IEIAGAGFINFTFSKEFLNNSLKTFSEEL 105
Query: 325 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384
+ +V++DFSSPNIAK+MHVGHLRSTIIGD ++R+ ++G+DV RLNH+GDWG
Sbjct: 106 SSGFRVKDPKKVVIDFSSPNIAKDMHVGHLRSTIIGDCLARVFAFVGNDVSRLNHIGDWG 165
Query: 385 TQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444
T FGMLI +LQ++ + + + DL YK++ RF ED FKKR+ VVALQ DP
Sbjct: 166 TAFGMLITYLQEEPSEDIEN---LEDLTVLYKKAHARFAEDAEFKKRSQTNVVALQAGDP 222
Query: 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRK 504
K W+ IC +S R FQKIY+ L++ + +RGESFY + +++ LE K L+ + D K
Sbjct: 223 SALKLWKQICAISERAFQKIYNILDIAIEKRGESFYNPFLPEIIQDLENKNLITISDNAK 282
Query: 505 IMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEE 564
++ E SIP+ + KSDGG+ Y T+DLAA+R R+ + AD I+ VTD+GQ +HF+LLE
Sbjct: 283 CVFHEGF-SIPLMVQKSDGGYNYATTDLAAMRYRVNNDGADKIIIVTDMGQSLHFQLLEA 341
Query: 565 STI 567
+ +
Sbjct: 342 TAL 344
Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/353 (40%), Positives = 199/353 (56%), Gaps = 51/353 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
STIIGD ++R+ ++G+DV RLNH+GDWGT FGMLI +LQ++ + + + DL Y
Sbjct: 137 STIIGDCLARVFAFVGNDVSRLNHIGDWGTAFGMLITYLQEEPSEDIEN---LEDLTVLY 193
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
K++ RF ED FKKR+ VVALQ DP K W+ IC +S R FQKIY+ L++ + +R
Sbjct: 194 KKAHARFAEDAEFKKRSQTNVVALQAGDPSALKLWKQICAISERAFQKIYNILDIAIEKR 253
Query: 685 GESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY---------------------------- 716
GESFY + +++ LE K ++++ V+
Sbjct: 254 GESFYNPFLPEIIQDLENKNLITISDNAKCVFHEGFSIPLMVQKSDGGYNYATTDLAAMR 313
Query: 717 -------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFK 763
VTD+GQ +HF+LLE A AG L PNK VGFG+VL + KKFK
Sbjct: 314 YRVNNDGADKIIIVTDMGQSLHFQLLEATALAAGYL-PNKETFSHVGFGLVLDSEGKKFK 372
Query: 764 TRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRN 823
TRSG+ +KL ELLD + ++ LK+ E++ E+S + IKYADLS +R
Sbjct: 373 TRSGENIKLKELLDTAIDQAKATLKE--HRPEISDEEISSRAPILGINAIKYADLSSHRV 430
Query: 824 LDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSED----PPEPDPSQ 872
DY+FSF+KML GNTA++LLYAY RI I R GI + D P +PS+
Sbjct: 431 SDYIFSFEKMLRFEGNTAMFLLYAYVRIQGIKRRLGIETLDLEATPNIQEPSE 483
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 18/196 (9%)
Query: 930 LRRSLDKLKDKNRHT------ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKM 983
L+ LD D+ + T E++ E+S + IKYADLS +R DY+FSF+KM
Sbjct: 381 LKELLDTAIDQAKATLKEHRPEISDEEISSRAPILGINAIKYADLSSHRVSDYIFSFEKM 440
Query: 984 LDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMND 1043
L GNTA++LLYAY RI I R GI + DL ++TP +++ E ALA LLR +
Sbjct: 441 LRFEGNTAMFLLYAYVRIQGIKRRLGIETLDL----EATP-NIQEPSEEALALALLRFPE 495
Query: 1044 VLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103
+ L +DLC H L +YLY ++ F+ F+ +C+ IE + K RL L K
Sbjct: 496 AIDLTLKDLCPHFLTDYLYMLTNKFNAFFRDCH-IEGSSHQK------ERLYLCALVEKT 548
Query: 1104 MKKCFDILNIRTVHKM 1119
+ +L ++T+ K+
Sbjct: 549 LAAGMHLLGLQTLDKL 564
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 17/143 (11%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
M++ YLS + A AFP++ + + + +++ FG +QCNDAM L +
Sbjct: 3 MTLLSYLSSLCREATLSAFPQIDTFSPDITQSTKEH---FGHYQCNDAMKLARTL----- 54
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNG 128
K P IA++I + + E+ T+ IE A GF+N S+ + +K
Sbjct: 55 KMAPRAIAEAIVNHIPKEIFTS---------IEIAGAGFINFTFSKEFLNNSLKTFSEEL 105
Query: 129 VQPPTLNKKLRVLVDFSSPNIAR 151
+ +V++DFSSPNIA+
Sbjct: 106 SSGFRVKDPKKVVIDFSSPNIAK 128
>sp|Q7V493|SYR_PROMM Arginine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313)
GN=argS PE=3 SV=1
Length = 612
Score = 280 bits (715), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 158/383 (41%), Positives = 220/383 (57%), Gaps = 42/383 (10%)
Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVH-----KFGDFQCNDAMALCKIF 259
+S+ L A+ AFPE + + + +FGDFQ N A+ L K
Sbjct: 11 LSLAHALESQLRAAIDRAFPEAAASARESGTGLDPQLAPASKPEFGDFQANAALPLAKPL 70
Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
K + IA+ + +L + + + E+A PGF+N+ + +++
Sbjct: 71 KQP---------PRQIAAAIVDQLMVDTAFTAICLTPEIAGPGFINLTVRPECLAAEVQA 121
Query: 320 IIV------------NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLL 367
+ N Q PT V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+L
Sbjct: 122 RLADARLGVPLVEGDNDGQQPT-----PVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVL 176
Query: 368 EYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDED 425
E+ GH V+RLNHVGDWGTQFGMLI HL+ P+ L + + DL FY+++K+RFD+D
Sbjct: 177 EFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALETADAVDLGDLVVFYRQAKQRFDDD 236
Query: 426 EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHME 485
E F+ + + VV LQ DP KAW ++CD SRR+FQKIYDRL+V L ERGESFY ++E
Sbjct: 237 EAFQTTSREEVVKLQGGDPISLKAWSLLCDQSRREFQKIYDRLDVRLNERGESFYNAYLE 296
Query: 486 QLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI- 539
+V L GLL DDG + ++ G+D +P+ + KSDGGF Y T+DLAA+R R
Sbjct: 297 SVVEDLNVSGLLVSDDGAQCVFLEGVTGKDGKPLPVIVQKSDGGFNYATTDLAAMRYRFA 356
Query: 540 ---EEEKADWIVYVTDLGQGVHF 559
+ + A ++YVTD GQ HF
Sbjct: 357 APPQGDGARRVIYVTDAGQANHF 379
Score = 267 bits (683), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 201/350 (57%), Gaps = 56/350 (16%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+ P+ L + + DL
Sbjct: 165 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALETADAVDLGDLVV 224
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FY+++K+RFD+DE F+ + + VV LQ DP KAW ++CD SRR+FQKIYDRL+V L
Sbjct: 225 FYRQAKQRFDDDEAFQTTSREEVVKLQGGDPISLKAWSLLCDQSRREFQKIYDRLDVRLN 284
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
ERGESFY ++E +V L G L +T K G
Sbjct: 285 ERGESFYNAYLESVVEDLNVSGLLVSDDGAQCVFLEGVTGKDGKPLPVIVQKSDGGFNYA 344
Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
++YVTD GQ HF + + A++AG + P+ R+ V F
Sbjct: 345 TTDLAAMRYRFAAPPQGDGARRVIYVTDAGQANHFAGVFQVAQRAGWI-PDAGRLQHVPF 403
Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
G+V GED KK KTR+GDTV+L ELLDE + R+ L+ + + E + + V
Sbjct: 404 GLVQGEDGKKLKTRAGDTVRLRELLDEAVERAESDLRRRLQEEGRDEDESFIEQVATTVG 463
Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
+KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G
Sbjct: 464 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 513
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 11/162 (6%)
Query: 958 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
V +KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G DL V
Sbjct: 462 VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLDV 517
Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
+ + +E+AL + LL+ + V+ V +L + LC YL+++S F+ FYD
Sbjct: 518 T--TAELQFSETQEWALVRELLKFDAVIAEVEEELLPNRLCTYLFELSQVFNRFYDQVPV 575
Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
++ + + + RL L TA +K +L I T+ +M
Sbjct: 576 LKAEQPSR-----SCRLALCRLTADTLKLGLSLLGIPTLERM 612
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 33/162 (20%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVH-----KFGDFQCNDAMALCKIF 63
+S+ L A+ AFPE + + + +FGDFQ N A+ L K
Sbjct: 11 LSLAHALESQLRAAIDRAFPEAAASARESGTGLDPQLAPASKPEFGDFQANAALPLAKPL 70
Query: 64 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVF------------ 111
K + IA+ + +L + + + E A PGF+N+
Sbjct: 71 KQP---------PRQIAAAIVDQLMVDTAFTAICLTPEIAGPGFINLTVRPECLAAEVQA 121
Query: 112 -LSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
L+ G + + +G QP V+VDFSSPNIA++
Sbjct: 122 RLADARLGVPLVEGDNDGQQPTP------VVVDFSSPNIAKE 157
>sp|A2CDB7|SYR_PROM3 Arginine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9303)
GN=argS PE=3 SV=1
Length = 603
Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/383 (40%), Positives = 220/383 (57%), Gaps = 42/383 (10%)
Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVH-----KFGDFQCNDAMALCKIF 259
+S+ L A+ AFPE + + + +FGDFQ N A+ L K
Sbjct: 2 LSLAHALESQLRAAIDRAFPEAAASARESGTGLDPQLAPASKPEFGDFQANAALPLAKPL 61
Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 319
K + IA+ + +L + + + ++A PGF+N+ + +++
Sbjct: 62 KQP---------PRQIAAAIVDQLMVDTAFNAICLTPDIAGPGFINLTVRPECLAAEVQA 112
Query: 320 IIV------------NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLL 367
+ N Q PT V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+L
Sbjct: 113 RLADARLGVPLVEGDNDGQQPT-----PVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVL 167
Query: 368 EYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDED 425
E+ GH V+RLNHVGDWGTQFGMLI HL+ P+ L + + DL FY+++K+RFD+D
Sbjct: 168 EFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALETADAVDLGDLVVFYRQAKQRFDDD 227
Query: 426 EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHME 485
E F+ + + VV LQ DP KAW ++CD SRR+FQKIYDRL+V L ERGESFY ++E
Sbjct: 228 EAFQTTSREEVVKLQGGDPLSLKAWSLLCDQSRREFQKIYDRLDVRLNERGESFYNAYLE 287
Query: 486 QLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI- 539
+V L GLL DDG + ++ G+D +P+ + KSDGGF Y T+DLAA+R R
Sbjct: 288 SVVEDLNVSGLLVSDDGAQCVFLEGVTGKDGKPLPVIVQKSDGGFNYATTDLAAMRYRFA 347
Query: 540 ---EEEKADWIVYVTDLGQGVHF 559
+ + A ++YVTD GQ HF
Sbjct: 348 APPQGDGARRVIYVTDAGQANHF 370
Score = 267 bits (683), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 201/350 (57%), Gaps = 56/350 (16%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+ P+ L + + DL
Sbjct: 156 STIIGDSLARVLEFRGHPVLRLNHVGDWGTQFGMLITHLKQVAPEALETADAVDLGDLVV 215
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FY+++K+RFD+DE F+ + + VV LQ DP KAW ++CD SRR+FQKIYDRL+V L
Sbjct: 216 FYRQAKQRFDDDEAFQTTSREEVVKLQGGDPLSLKAWSLLCDQSRREFQKIYDRLDVRLN 275
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
ERGESFY ++E +V L G L +T K G
Sbjct: 276 ERGESFYNAYLESVVEDLNVSGLLVSDDGAQCVFLEGVTGKDGKPLPVIVQKSDGGFNYA 335
Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
++YVTD GQ HF + + A++AG + P+ R+ V F
Sbjct: 336 TTDLAAMRYRFAAPPQGDGARRVIYVTDAGQANHFAGVFQVAQRAGWI-PDAGRLQHVPF 394
Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
G+V GED KK KTR+GDTV+L ELLDE + R+ L+ + + E + + V
Sbjct: 395 GLVQGEDGKKLKTRAGDTVRLRELLDEAVERAESDLRRRLQEEGRDEDESFIEQVATTVG 454
Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
+KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G
Sbjct: 455 LAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 504
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 11/162 (6%)
Query: 958 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017
V +KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G DL V
Sbjct: 453 VGLAAVKYADLSQNRITNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG----DLDV 508
Query: 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
+ + +E+AL + LL+ + V+ V +L + LC YL+++S F+ FYD
Sbjct: 509 T--TAELQFSETQEWALVRELLKFDAVIAEVEEELLPNRLCTYLFELSQVFNRFYDQVPV 566
Query: 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
++ + + + RL L TA +K +L I T+ +M
Sbjct: 567 LKAEQPSR-----SCRLALCRLTADTLKLGLSLLGIPTLERM 603
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 33/162 (20%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVH-----KFGDFQCNDAMALCKIF 63
+S+ L A+ AFPE + + + +FGDFQ N A+ L K
Sbjct: 2 LSLAHALESQLRAAIDRAFPEAAASARESGTGLDPQLAPASKPEFGDFQANAALPLAKPL 61
Query: 64 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVF------------ 111
K + IA+ + +L + + + + A PGF+N+
Sbjct: 62 KQP---------PRQIAAAIVDQLMVDTAFNAICLTPDIAGPGFINLTVRPECLAAEVQA 112
Query: 112 -LSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
L+ G + + +G QP V+VDFSSPNIA++
Sbjct: 113 RLADARLGVPLVEGDNDGQQPTP------VVVDFSSPNIAKE 148
>sp|A2C016|SYR_PROM1 Arginine--tRNA ligase OS=Prochlorococcus marinus (strain NATL1A)
GN=argS PE=3 SV=1
Length = 607
Score = 273 bits (698), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 160/384 (41%), Positives = 232/384 (60%), Gaps = 40/384 (10%)
Query: 205 MSVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNE---KYVHKFGDFQCNDAMALCKIF 259
+ + L + A FP+ KT+S+ + + +FGDFQ N A++L K
Sbjct: 2 LEISARLEEALNRAFTKVFPQEDRSSKTSSILTGSNLVPASKPEFGDFQINCALSLAKEI 61
Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNV------FLSRVY- 312
+ P DIAQ IA +L + ++ + +A PGF+N+ +S ++
Sbjct: 62 N-----RPPRDIAQQIAK----QLQQDNDFVRICNPPLIAGPGFINLSINSKTLISEIHF 112
Query: 313 ------AGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRL 366
G +K + ++ N RV++DFSSPNIAKEMHVGHLRSTIIGD+++R+
Sbjct: 113 RLNDKRLGVPLKKFNTDKIEEEKSNN--RVIIDFSSPNIAKEMHVGHLRSTIIGDSLARV 170
Query: 367 LEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKS-PPIADLQAFYKESKKRFDE 424
LE+ G++V+RLNHVGDWGTQFGMLI HL++ P+ L TK I+DL FY+++KKRFDE
Sbjct: 171 LEFCGYEVLRLNHVGDWGTQFGMLITHLKEVVPEVLHTKDVVEISDLVNFYRQAKKRFDE 230
Query: 425 DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHM 484
D+IF+ ++ VV LQ D + AW+++C+ SR++FQKIYDRL++ LTERGESFY K +
Sbjct: 231 DQIFQNKSRSEVVNLQAGDKESLIAWQLLCNQSRKEFQKIYDRLDIKLTERGESFYNKFL 290
Query: 485 EQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI 539
++ L+ K LL D G + ++ G+D P+ I KSDGGF Y T+DLAAI+ R+
Sbjct: 291 VDVINDLKNKKLLINDQGAQCIFLDGLVGKDGKPQPIIIQKSDGGFNYATTDLAAIKYRL 350
Query: 540 ----EEEKADWIVYVTDLGQGVHF 559
+ A ++YVTD GQ HF
Sbjct: 351 TIPPHGDGACRLIYVTDAGQASHF 374
Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 221/381 (58%), Gaps = 61/381 (16%)
Query: 538 RIEEEKADWIVYV----TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
+IEEEK++ V + ++ + +H L STIIGD+++R+LE+ G++V+RLNHVGDWG
Sbjct: 130 KIEEEKSNNRVIIDFSSPNIAKEMHVGHLR-STIIGDSLARVLEFCGYEVLRLNHVGDWG 188
Query: 594 TQFGMLIAHLQDKFPDYL-TKSP-PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 651
TQFGMLI HL++ P+ L TK I+DL FY+++KKRFDED+IF+ ++ VV LQ
Sbjct: 189 TQFGMLITHLKEVVPEVLHTKDVVEISDLVNFYRQAKKRFDEDQIFQNKSRSEVVNLQAG 248
Query: 652 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKG------- 704
D + AW+++C+ SR++FQKIYDRL++ LTERGESFY K + ++ L+ K
Sbjct: 249 DKESLIAWQLLCNQSRKEFQKIYDRLDIKLTERGESFYNKFLVDVINDLKNKKLLINDQG 308
Query: 705 ----------------------------NLSLTKKLGIVY----------------VTDL 720
N + T I Y VTD
Sbjct: 309 AQCIFLDGLVGKDGKPQPIIIQKSDGGFNYATTDLAAIKYRLTIPPHGDGACRLIYVTDA 368
Query: 721 GQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL 780
GQ HF + + AK A + P +++ V FG+V GED KK KTRSG+T++L +LLDE +
Sbjct: 369 GQASHFSGVFQIAKLANWI-PTDCQIEHVPFGLVQGEDGKKLKTRSGETIRLVDLLDEAI 427
Query: 781 RRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 838
+R+ D LK++ + E + + V IKYADLS NR +Y FSFDKML +G
Sbjct: 428 QRARDDLKNRLNTESRSENENFIDKVSTTVGIASIKYADLSQNRISNYQFSFDKMLSLQG 487
Query: 839 NTAVYLLYAYTRIASIARTAG 859
NTA YLLYA RIA I+R G
Sbjct: 488 NTAPYLLYALVRIAGISRKGG 508
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 13/193 (6%)
Query: 929 GLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
++R+ D LK++ + E + + V IKYADLS NR +Y FSFDKML
Sbjct: 426 AIQRARDDLKNRLNTESRSENENFIDKVSTTVGIASIKYADLSQNRISNYQFSFDKMLSL 485
Query: 987 RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
+GNTA YLLYA RIA I+R G DL V++Q+ + +E+ L + LL+++ ++
Sbjct: 486 QGNTAPYLLYALVRIAGISRKGG----DLNVSSQN--IQFNESQEWDLIRKLLQLDSIIA 539
Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
V ++L + LC YL+++S F+ FYD ++ + RL+L TA +K
Sbjct: 540 EVEKELLPNRLCGYLFELSQTFNRFYDQVPILKASEPSR-----ASRLVLCSITADTLKL 594
Query: 1107 CFDILNIRTVHKM 1119
+L I T+ +M
Sbjct: 595 GMSLLGIPTLERM 607
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 29/162 (17%)
Query: 9 MSVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNE---KYVHKFGDFQCNDAMALCKIF 63
+ + L + A FP+ KT+S+ + + +FGDFQ N A++L K
Sbjct: 2 LEISARLEEALNRAFTKVFPQEDRSSKTSSILTGSNLVPASKPEFGDFQINCALSLAKEI 61
Query: 64 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNV------FLSRVY- 116
+ P DIAQ IA +L + ++ + A PGF+N+ +S ++
Sbjct: 62 N-----RPPRDIAQQIAK----QLQQDNDFVRICNPPLIAGPGFINLSINSKTLISEIHF 112
Query: 117 ------AGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
G +K + ++ N RV++DFSSPNIA++
Sbjct: 113 RLNDKRLGVPLKKFNTDKIEEEKSNN--RVIIDFSSPNIAKE 152
>sp|Q46HI6|SYR_PROMT Arginine--tRNA ligase OS=Prochlorococcus marinus (strain NATL2A)
GN=argS PE=3 SV=1
Length = 607
Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/384 (41%), Positives = 234/384 (60%), Gaps = 40/384 (10%)
Query: 205 MSVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNE---KYVHKFGDFQCNDAMALCKIF 259
+ + L + A FP+ KT+S+ + + +FGDFQ N A++L K
Sbjct: 2 LEISARLEEALNRAFIKVFPQEDRSSKTSSILTGSNLVPASKPEFGDFQINCALSLAKEI 61
Query: 260 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNV------FLSRVYA 313
K + P +IAQ IA+ +L + ++ + +A PGF+N+ +S ++
Sbjct: 62 K-----QPPREIAQKIAN----QLQKDNDFVRMCNPPRIAGPGFINLSINSKTLISEIHV 112
Query: 314 -------GEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRL 366
G +K + ++ N RV++DFSSPNIAKEMHVGHLRSTIIGD+++R+
Sbjct: 113 RLNDKRLGVPLKKFSTDKIEEGKSNN--RVILDFSSPNIAKEMHVGHLRSTIIGDSLARI 170
Query: 367 LEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKS-PPIADLQAFYKESKKRFDE 424
LE+ G++V+RLNHVGDWGTQFGMLI HL++ P+ L TK I+DL FY+++KKRFDE
Sbjct: 171 LEFRGYEVLRLNHVGDWGTQFGMLITHLKEVVPEVLHTKDVVEISDLVNFYRQAKKRFDE 230
Query: 425 DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHM 484
D+IF+ ++ VV LQ D + AW+++C+ SR++FQKIYDRL++ LTERGESFY K +
Sbjct: 231 DQIFQNKSRSEVVNLQAGDKESLIAWQLLCNQSRKEFQKIYDRLDIKLTERGESFYNKFL 290
Query: 485 EQLVPYLEKKGLLELDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRI 539
++ L+ K LL D G + ++ G++ P+ I KSDGGF Y T+DLAAI+ R+
Sbjct: 291 VDVINDLKNKKLLINDQGAQCIFLDGLVGKNGKPQPIIIQKSDGGFNYATTDLAAIKYRL 350
Query: 540 ----EEEKADWIVYVTDLGQGVHF 559
+ A ++YVTD GQ HF
Sbjct: 351 TIPPHGDGACRLIYVTDAGQASHF 374
Score = 260 bits (664), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 222/381 (58%), Gaps = 61/381 (16%)
Query: 538 RIEEEKADWIVYV----TDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWG 593
+IEE K++ V + ++ + +H L STIIGD+++R+LE+ G++V+RLNHVGDWG
Sbjct: 130 KIEEGKSNNRVILDFSSPNIAKEMHVGHLR-STIIGDSLARILEFRGYEVLRLNHVGDWG 188
Query: 594 TQFGMLIAHLQDKFPDYL-TKSP-PIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 651
TQFGMLI HL++ P+ L TK I+DL FY+++KKRFDED+IF+ ++ VV LQ
Sbjct: 189 TQFGMLITHLKEVVPEVLHTKDVVEISDLVNFYRQAKKRFDEDQIFQNKSRSEVVNLQAG 248
Query: 652 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNL----- 706
D + AW+++C+ SR++FQKIYDRL++ LTERGESFY K + ++ L+ K L
Sbjct: 249 DKESLIAWQLLCNQSRKEFQKIYDRLDIKLTERGESFYNKFLVDVINDLKNKKLLINDQG 308
Query: 707 -------SLTKKLG---------------------------------------IVYVTDL 720
L K G ++YVTD
Sbjct: 309 AQCIFLDGLVGKNGKPQPIIIQKSDGGFNYATTDLAAIKYRLTIPPHGDGACRLIYVTDA 368
Query: 721 GQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL 780
GQ HF + + AK A + P +++ V FG+V GED KK KTRSG+T++L +LLDE +
Sbjct: 369 GQASHFSGVFQIAKLANWI-PTDCQIEHVPFGLVQGEDGKKLKTRSGETIRLVDLLDEAI 427
Query: 781 RRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 838
+R+ + LK++ + E + + V IKYADLS NR +Y FSFDKML +G
Sbjct: 428 QRAKNDLKNRLNTERRSENENFIDKVSTTVGIASIKYADLSQNRISNYQFSFDKMLSLQG 487
Query: 839 NTAVYLLYAYTRIASIARTAG 859
NTA YLLYA RIA I+R G
Sbjct: 488 NTAPYLLYALVRIAGISRKGG 508
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 13/193 (6%)
Query: 929 GLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
++R+ + LK++ + E + + V IKYADLS NR +Y FSFDKML
Sbjct: 426 AIQRAKNDLKNRLNTERRSENENFIDKVSTTVGIASIKYADLSQNRISNYQFSFDKMLSL 485
Query: 987 RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
+GNTA YLLYA RIA I+R G DL V++ + + +E+ L + LL+++ ++
Sbjct: 486 QGNTAPYLLYALVRIAGISRKGG----DLNVSSHN--IQFNESQEWELIRKLLQLDYIIA 539
Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
V ++L + LC YL+++S F+ FYD ++ + RL+L TA +K
Sbjct: 540 EVEKELLPNRLCGYLFELSQTFNRFYDQVPILKASEPSR-----ASRLILCSITADTLKL 594
Query: 1107 CFDILNIRTVHKM 1119
+L I T+ +M
Sbjct: 595 GMSLLGIPTLERM 607
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 29/162 (17%)
Query: 9 MSVRDYLSDVFTHAVQVAFPE--LGDKTASVASTNE---KYVHKFGDFQCNDAMALCKIF 63
+ + L + A FP+ KT+S+ + + +FGDFQ N A++L K
Sbjct: 2 LEISARLEEALNRAFIKVFPQEDRSSKTSSILTGSNLVPASKPEFGDFQINCALSLAKEI 61
Query: 64 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNV------FLSRVYA 117
K + P +IAQ IA+ +L + ++ + A PGF+N+ +S ++
Sbjct: 62 K-----QPPREIAQKIAN----QLQKDNDFVRMCNPPRIAGPGFINLSINSKTLISEIHV 112
Query: 118 -------GEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARK 152
G +K + ++ N RV++DFSSPNIA++
Sbjct: 113 RLNDKRLGVPLKKFSTDKIEEGKSNN--RVILDFSSPNIAKE 152
>sp|Q7V396|SYR_PROMP Arginine--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=argS PE=3 SV=1
Length = 603
Score = 266 bits (680), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 151/340 (44%), Positives = 207/340 (60%), Gaps = 26/340 (7%)
Query: 237 NEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKI 296
N+ +FGD+QCN + L KI+K NP +IA IA + T L N ++ + + +
Sbjct: 38 NQASKEEFGDYQCNICLVLSKIYKS-----NPREIA--IAFIET--LKENKKISNLCENL 88
Query: 297 EVAKPGFVNVFLSRVYAGEQIKDII------VNGVQPPTLNKKLRVLVDFSSPNIAKEMH 350
E+A PGF+N+ L E IK I V + K +V+VDFSSPNIAKEMH
Sbjct: 89 EIAGPGFINIKLKNKVLIEAIKSNIKCPRAGVPLSHKNNIYSKKKVIVDFSSPNIAKEMH 148
Query: 351 VGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPI 408
VGHLRSTIIGD+IS++ E+ G+ V+RLNH+GDWGTQFGMLI L+D + L + I
Sbjct: 149 VGHLRSTIIGDSISKIFEFRGYIVLRLNHIGDWGTQFGMLITQLKDLYSSDLKEIDRIKI 208
Query: 409 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 468
+DL FYK SKKRFD + F+KR+ + VV LQ D +AW+++C+ SR++F +IY L
Sbjct: 209 SDLVEFYKASKKRFDNETEFQKRSREEVVQLQSGDKKSIEAWKLLCNQSRKEFDQIYKTL 268
Query: 469 NVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKI-----MWGEDRGSIPMTIVKSDG 523
N+ + ERGESFY ++ ++ L K +L D G K M ++ +P+ I K DG
Sbjct: 269 NIKIKERGESFYNPFLKSIIEDLNYKKILIEDQGAKCVFLDGMTNKEGNPLPLIIQKKDG 328
Query: 524 GFTYDTSDLAAIRQRIEEE----KADWIVYVTDLGQGVHF 559
GF Y T+DLAA+R R +E A I+YVTD GQ HF
Sbjct: 329 GFNYATTDLAALRYRFTKEPYGDNAARIIYVTDHGQSNHF 368
Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 196/356 (55%), Gaps = 60/356 (16%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQA 622
STIIGD+IS++ E+ G+ V+RLNH+GDWGTQFGMLI L+D + L + I+DL
Sbjct: 154 STIIGDSISKIFEFRGYIVLRLNHIGDWGTQFGMLITQLKDLYSSDLKEIDRIKISDLVE 213
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FYK SKKRFD + F+KR+ + VV LQ D +AW+++C+ SR++F +IY LN+ +
Sbjct: 214 FYKASKKRFDNETEFQKRSREEVVQLQSGDKKSIEAWKLLCNQSRKEFDQIYKTLNIKIK 273
Query: 683 ERGESFYQKHMEQLVPYL---------------------EKKGN---LSLTKKLG----- 713
ERGESFY ++ ++ L K+GN L + KK G
Sbjct: 274 ERGESFYNPFLKSIIEDLNYKKILIEDQGAKCVFLDGMTNKEGNPLPLIIQKKDGGFNYA 333
Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
I+YVTD GQ HF + + AK+A + P ++ V F
Sbjct: 334 TTDLAALRYRFTKEPYGDNAARIIYVTDHGQSNHFAGVFQVAKRANWI-PKDCEVNHVPF 392
Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQA 807
G+V G D KK KTR GDT+KL +LL E ++R+ L +L++++R + +
Sbjct: 393 GLVQGIDGKKLKTREGDTIKLKDLLSESVKRAKEDLLKRLENESRFE--NDDFVLNTSKV 450
Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 863
+ G +KYADLS NR +Y FSF+KML GNTA YLLY RI+ I R + E
Sbjct: 451 IGIGAVKYADLSQNRITNYQFSFEKMLSLNGNTAPYLLYTLVRISGINRKNNMTEE 506
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
Query: 954 AQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSE 1013
+ + G +KYADLS NR +Y FSF+KML GNTA YLLY RI+ I R + E
Sbjct: 447 TSKVIGIGAVKYADLSQNRITNYQFSFEKMLSLNGNTAPYLLYTLVRISGINRKNNMTEE 506
Query: 1014 DLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYD 1073
+ + + +S H+ E+ L + LL+ ++V++ + +DL + LC YL+++ F+ FYD
Sbjct: 507 AINLES----ISYSHDLEWKLIRKLLKFDEVIISIEKDLMPNRLCNYLFELCKTFNRFYD 562
Query: 1074 NCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
++ + + KI RL L T K +K ++L I T+ +M
Sbjct: 563 QVPILKGEIDTKI-----SRLTLCALTEKTLKLSLELLGIETLERM 603
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 41 NEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKI 100
N+ +FGD+QCN + L KI+K NP +IA IA + T L N ++ + + +
Sbjct: 38 NQASKEEFGDYQCNICLVLSKIYKS-----NPREIA--IAFIET--LKENKKISNLCENL 88
Query: 101 EAAKPGFVNVFLSRVYAGEQMKDII------VNGVQPPTLNKKLRVLVDFSSPNIARKGG 154
E A PGF+N+ L E +K I V + K +V+VDFSSPNIA++
Sbjct: 89 EIAGPGFINIKLKNKVLIEAIKSNIKCPRAGVPLSHKNNIYSKKKVIVDFSSPNIAKE-- 146
Query: 155 FLYPHLPSQIHDILISK 171
HL S I ISK
Sbjct: 147 MHVGHLRSTIIGDSISK 163
>sp|Q31CZ4|SYR_PROM9 Arginine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9312)
GN=argS PE=3 SV=1
Length = 604
Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/336 (44%), Positives = 205/336 (61%), Gaps = 27/336 (8%)
Query: 242 HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKP 301
+FGD+QCN + L KI+K K P +I++ + L N S++K+ +E+A P
Sbjct: 43 EEFGDYQCNVCLCLSKIYK-----KKPREISEDFVYL----LNKNKSISKLCKSLEIAGP 93
Query: 302 GFVNVFLS-RVYAGEQIKDIIVNGVQPPTLNKKL------RVLVDFSSPNIAKEMHVGHL 354
GF+N+ L V E +I P + K L +V+VDFSSPNIAKEMHVGHL
Sbjct: 94 GFINIKLKDEVLINEIKSNIQCPRAGIPLIKKDLDSGLSNKVIVDFSSPNIAKEMHVGHL 153
Query: 355 RSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQ 412
RSTIIGD+ISR+ E G+ V+RLNHVGDWGTQFGMLI L+D + + L + I+DL
Sbjct: 154 RSTIIGDSISRIFELRGYQVLRLNHVGDWGTQFGMLITQLKDLYSNDLEEIGKIKISDLV 213
Query: 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL 472
FYK SKKRFD + F+KR+ + VV LQ D +AW+++CD SR++F +IY L + +
Sbjct: 214 EFYKASKKRFDNESEFQKRSREEVVKLQSGDSKSIQAWKLLCDQSRKEFDEIYKNLKIKI 273
Query: 473 TERGESFYQKHMEQLVPYLEKKGLLELDDGRKI-----MWGEDRGSIPMTIVKSDGGFTY 527
ERGESFY ++ ++ L+ K +L D G K M ++ +P+ + K DGGF Y
Sbjct: 274 KERGESFYNPFLKSVIEDLKFKKILIEDQGAKCVFLDGMTNKEGKPLPLIVQKKDGGFNY 333
Query: 528 DTSDLAAIRQRIEE----EKADWIVYVTDLGQGVHF 559
T+DLAAIR R + + A I+YVTD GQ HF
Sbjct: 334 ATTDLAAIRYRFNKAPNGDDASRIIYVTDHGQANHF 369
Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 198/349 (56%), Gaps = 60/349 (17%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQA 622
STIIGD+ISR+ E G+ V+RLNHVGDWGTQFGMLI L+D + + L + I+DL
Sbjct: 155 STIIGDSISRIFELRGYQVLRLNHVGDWGTQFGMLITQLKDLYSNDLEEIGKIKISDLVE 214
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FYK SKKRFD + F+KR+ + VV LQ D +AW+++CD SR++F +IY L + +
Sbjct: 215 FYKASKKRFDNESEFQKRSREEVVKLQSGDSKSIQAWKLLCDQSRKEFDEIYKNLKIKIK 274
Query: 683 ERGESFYQKHMEQLVPYLEKKGNL------------SLTKKLG----------------- 713
ERGESFY ++ ++ L+ K L +T K G
Sbjct: 275 ERGESFYNPFLKSVIEDLKFKKILIEDQGAKCVFLDGMTNKEGKPLPLIVQKKDGGFNYA 334
Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
I+YVTD GQ HF + + AKKA + P+K ++D V F
Sbjct: 335 TTDLAAIRYRFNKAPNGDDASRIIYVTDHGQANHFAGVFQVAKKAKWI-PDKCQVDHVPF 393
Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS----LDKLKDKNRHTELTPTELSEAQQA 807
G+V G D KK KTR G+T++L +LL+E +RR+ L +L+D++R+ T ++ +
Sbjct: 394 GLVQGIDGKKLKTREGETIRLKDLLNEAVRRAKEDLLKRLEDEDRYE--TEEFIANTSRI 451
Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 856
+ G +KYADLS NR +Y FSFDKML GNTA YLLY RI+ I R
Sbjct: 452 IGLGAVKYADLSQNRITNYQFSFDKMLSLNGNTAPYLLYTLVRISGIKR 500
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 108/188 (57%), Gaps = 15/188 (7%)
Query: 934 LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY 993
L +L+D++R+ T ++ + + G +KYADLS NR +Y FSFDKML GNTA Y
Sbjct: 430 LKRLEDEDRYE--TEEFIANTSRIIGLGAVKYADLSQNRITNYQFSFDKMLSLNGNTAPY 487
Query: 994 LLYAYTRIASIARTAGI--NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
LLY RI+ I R +SED + ++ EH+ E+ L + LL+ ++V++ + +D
Sbjct: 488 LLYTLVRISGIKRKNDFVYDSEDFQY------INYEHKSEWKLIRKLLKFDEVIISIEKD 541
Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
L + LC YL+++ F+ FYD ++++ K + RL L + TAK +K ++L
Sbjct: 542 LMPNRLCNYLFELCQTFNRFYDQVPILKEE-----KNIKISRLNLCDLTAKTLKLSLELL 596
Query: 1112 NIRTVHKM 1119
I T+ +M
Sbjct: 597 GIETLERM 604
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 16/114 (14%)
Query: 46 HKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKP 105
+FGD+QCN + L KI+ KK P +I++ + L N S++K+ +E A P
Sbjct: 43 EEFGDYQCNVCLCLSKIY-----KKKPREISEDFVYL----LNKNKSISKLCKSLEIAGP 93
Query: 106 GFVNVFLS-RVYAGEQMKDIIVNGVQPPTLNKKL------RVLVDFSSPNIARK 152
GF+N+ L V E +I P + K L +V+VDFSSPNIA++
Sbjct: 94 GFINIKLKDEVLINEIKSNIQCPRAGIPLIKKDLDSGLSNKVIVDFSSPNIAKE 147
>sp|Q3AVY5|SYR_SYNS9 Arginine--tRNA ligase OS=Synechococcus sp. (strain CC9902) GN=argS
PE=3 SV=1
Length = 590
Score = 257 bits (656), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 153/350 (43%), Positives = 208/350 (59%), Gaps = 56/350 (16%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQA 622
STIIGD+++R+LE+ GH V+RLNHVGDWGTQFGMLI HL+ P+ L + + DL A
Sbjct: 143 STIIGDSLARVLEFRGHSVLRLNHVGDWGTQFGMLITHLKQVAPETLDTADAVDLGDLVA 202
Query: 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT 682
FY+E+KKRFD+D+ F+ + VV LQ DP KAW ++CD SRR+FQK+YDRL++ LT
Sbjct: 203 FYREAKKRFDDDDDFQATSRDEVVKLQGGDPVSLKAWGLLCDQSRREFQKLYDRLDIRLT 262
Query: 683 ERGESFYQKHMEQLVPYLE---------------------KKGN---LSLTKKLG----- 713
ERGESFY ++ ++ L+ K GN + + K+ G
Sbjct: 263 ERGESFYNPYLPAVLDGLKAVDLLVTDDGAQCVFLEGVTGKDGNPLPVIVQKRDGGFNYA 322
Query: 714 ----------------------IVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGF 751
++YVTD GQ HF + + A++AG + P+ R++ V F
Sbjct: 323 TTDLAAIRFRFASPPTGDAAQRVIYVTDAGQANHFAGVFQVAERAGWI-PDGARLEHVPF 381
Query: 752 GVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTE--LSEAQQAVA 809
G+V GED KK KTR+GDTV+L +LLDE + RS L+ + + E T ++ +S V
Sbjct: 382 GLVQGEDGKKLKTRAGDTVRLRDLLDEAVERSEQDLRSRLQEEERTESDAFISHVATTVG 441
Query: 810 YGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859
+KYADLS NR +Y FSFD+ML +GNTA YLLYA RIA IAR G
Sbjct: 442 LAAVKYADLSQNRLTNYQFSFDRMLALQGNTAPYLLYAVVRIAGIARKGG 491
Score = 256 bits (654), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 221/370 (59%), Gaps = 29/370 (7%)
Query: 205 MSVRDYLSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 261
+S+ L A+Q AFP+ D + AS E FGDFQ N A+ L K K
Sbjct: 2 LSLSQTLDAQLRAAMQRAFPDAEATLDPQLAAASKPE-----FGDFQANGALPLAKPLKQ 56
Query: 262 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII 321
+ IA+ + +L+ + + + ++A PGF+N+ + E++ +
Sbjct: 57 P---------PRQIATAIVDQLSGDEAFNALCLAPQIAGPGFINLTIRPERLAEELAARL 107
Query: 322 -VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
+ + P + V+VDFSSPNIAKEMHVGHLRSTIIGD+++R+LE+ GH V+RLNHV
Sbjct: 108 GTDRLGVPVVEDVAPVVVDFSSPNIAKEMHVGHLRSTIIGDSLARVLEFRGHSVLRLNHV 167
Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPI--ADLQAFYKESKKRFDEDEIFKKRAYQCVVA 438
GDWGTQFGMLI HL+ P+ L + + DL AFY+E+KKRFD+D+ F+ + VV
Sbjct: 168 GDWGTQFGMLITHLKQVAPETLDTADAVDLGDLVAFYREAKKRFDDDDDFQATSRDEVVK 227
Query: 439 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLE 498
LQ DP KAW ++CD SRR+FQK+YDRL++ LTERGESFY ++ ++ L+ LL
Sbjct: 228 LQGGDPVSLKAWGLLCDQSRREFQKLYDRLDIRLTERGESFYNPYLPAVLDGLKAVDLLV 287
Query: 499 LDDGRKIMW-----GEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEE----EKADWIVY 549
DDG + ++ G+D +P+ + K DGGF Y T+DLAAIR R + A ++Y
Sbjct: 288 TDDGAQCVFLEGVTGKDGNPLPVIVQKRDGGFNYATTDLAAIRFRFASPPTGDAAQRVIY 347
Query: 550 VTDLGQGVHF 559
VTD GQ HF
Sbjct: 348 VTDAGQANHF 357
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 104/193 (53%), Gaps = 13/193 (6%)
Query: 929 GLRRSLDKLKDKNRHTELTPTE--LSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDD 986
+ RS L+ + + E T ++ +S V +KYADLS NR +Y FSFD+ML
Sbjct: 409 AVERSEQDLRSRLQEEERTESDAFISHVATTVGLAAVKYADLSQNRLTNYQFSFDRMLAL 468
Query: 987 RGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
+GNTA YLLYA RIA IAR G DL V+ + + +E+AL + LL+ + V++
Sbjct: 469 QGNTAPYLLYAVVRIAGIARKGG----DLGVS--NAALQFSEPQEWALVRELLKFDRVIV 522
Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106
V +L + LC YL+++S F+ FYD ++ + E + RL L TA ++
Sbjct: 523 EVEDELLPNRLCSYLFELSQVFNRFYDQVPVLKAEPE-----ALSSRLALCRHTADTLRC 577
Query: 1107 CFDILNIRTVHKM 1119
+L I T+ +M
Sbjct: 578 GLALLGIPTLERM 590
Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELG---DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKD 65
+S+ L A+Q AFP+ D + AS E FGDFQ N A+ L K K
Sbjct: 2 LSLSQTLDAQLRAAMQRAFPDAEATLDPQLAAASKPE-----FGDFQANGALPLAKPLKQ 56
Query: 66 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDII 125
+ IA+ + +L+ + + + + A PGF+N+ + E++ +
Sbjct: 57 P---------PRQIATAIVDQLSGDEAFNALCLAPQIAGPGFINLTIRPERLAEELAARL 107
Query: 126 -VNGVQPPTLNKKLRVLVDFSSPNIARK 152
+ + P + V+VDFSSPNIA++
Sbjct: 108 GTDRLGVPVVEDVAPVVVDFSSPNIAKE 135
>sp|B8CI29|SYR_SHEPW Arginine--tRNA ligase OS=Shewanella piezotolerans (strain WP3 / JCM
13877) GN=argS PE=3 SV=1
Length = 581
Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/325 (43%), Positives = 198/325 (60%), Gaps = 22/325 (6%)
Query: 245 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFV 304
GDF N AM L K +KNP +IAQ I N + ++K+E+A PGF+
Sbjct: 41 GDFATNLAMMLTK-----AARKNPREIAQLIID--------NLPQSSHVEKVEIAGPGFI 87
Query: 305 NVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364
N F+ Q+ D + + TL + V+VD+SSPN+AKEMHVGHLRSTIIGD++
Sbjct: 88 NFFIDDNALANQLMDALNSDHLGVTLPESQTVVVDYSSPNLAKEMHVGHLRSTIIGDSVV 147
Query: 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAFYKESKKRFD 423
R LE++GH+V+R NHVGDWGTQFGML+A++++ + + ++DL+ FY+ +K RFD
Sbjct: 148 RSLEFMGHNVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAQIELSDLENFYRAAKVRFD 207
Query: 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFY 480
E E F RA + VVALQ D K W D+S +IY+RL V+LT RGES Y
Sbjct: 208 ESEDFANRARKLVVALQSGDEYCNKLWREFNDISLSHCHEIYERLGVSLTRQDVRGESSY 267
Query: 481 QKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS-----IPMTIVKSDGGFTYDTSDLAAI 535
+EQ+V L+ +GLL +G K+++ E+ + +P+ I K+DGG+ Y TSD+AA+
Sbjct: 268 NDDLEQVVADLDSQGLLSESNGAKVVFQEEFKNKEGEPLPVIIQKADGGYLYATSDMAAM 327
Query: 536 RQRIEEEKADWIVYVTDLGQGVHFR 560
R R KAD +Y DL Q +HF+
Sbjct: 328 RYRSNVLKADRALYFVDLRQALHFQ 352
Score = 226 bits (576), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 135/345 (39%), Positives = 189/345 (54%), Gaps = 54/345 (15%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD-KFPDYLTKSPPIADLQAF 623
STIIGD++ R LE++GH+V+R NHVGDWGTQFGML+A++++ + + ++DL+ F
Sbjct: 139 STIIGDSVVRSLEFMGHNVIRQNHVGDWGTQFGMLLAYMEELRAANGEQAQIELSDLENF 198
Query: 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE 683
Y+ +K RFDE E F RA + VVALQ D K W D+S +IY+RL V+LT
Sbjct: 199 YRAAKVRFDESEDFANRARKLVVALQSGDEYCNKLWREFNDISLSHCHEIYERLGVSLTR 258
Query: 684 ---RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV------------------------- 715
RGES Y +EQ+V L+ +G LS + +V
Sbjct: 259 QDVRGESSYNDDLEQVVADLDSQGLLSESNGAKVVFQEEFKNKEGEPLPVIIQKADGGYL 318
Query: 716 ----------------------YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGV 753
Y DL Q +HF+ + + AK A + + + +GFG
Sbjct: 319 YATSDMAAMRYRSNVLKADRALYFVDLRQALHFQQVFKLAKTAKFVREEMS-FEHMGFGT 377
Query: 754 VLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCI 813
+ GED + FKTRSG VKL +LL E R+L+ ++ KN ++ EL+E + V +
Sbjct: 378 MNGEDGRPFKTRSGGVVKLIDLLKEADTRALELVRSKN--PDMDEAELAEIARVVGIASV 435
Query: 814 KYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA 858
KYADLS NR DY+FSF++ML GNTA YLLYAYTR+A I + A
Sbjct: 436 KYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA 480
Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 113/188 (60%), Gaps = 12/188 (6%)
Query: 932 RSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTA 991
R+L+ ++ KN ++ EL+E + V +KYADLS NR DY+FSF++ML GNTA
Sbjct: 406 RALELVRSKN--PDMDEAELAEIARVVGIASVKYADLSKNRTSDYIFSFEQMLSFEGNTA 463
Query: 992 VYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRD 1051
YLLYAYTR+A I + A +D+ ++ + LEHEKE L L + +V+ V
Sbjct: 464 PYLLYAYTRVAGIFKRA----QDVDLS--DAKIVLEHEKEKDLGTKLAQFGEVMNRVVNK 517
Query: 1052 LCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDIL 1111
H LC YL++++ AFS FY+ C + D E + K+ RLLLA+ TAK +K+ ++L
Sbjct: 518 GQPHALCAYLFELAGAFSSFYEACPVLAADTEAQKKS----RLLLAQLTAKTLKQGLNLL 573
Query: 1112 NIRTVHKM 1119
+ T+ +M
Sbjct: 574 GLETLERM 581
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 49 GDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFV 108
GDF N AM L K +KNP +IAQ I N + ++K+E A PGF+
Sbjct: 41 GDFATNLAMMLTK-----AARKNPREIAQLIID--------NLPQSSHVEKVEIAGPGFI 87
Query: 109 NVFLSRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
N F+ Q+ D + + TL + V+VD+SSPN+A++ HL S I
Sbjct: 88 NFFIDDNALANQLMDALNSDHLGVTLPESQTVVVDYSSPNLAKE--MHVGHLRSTI 141
>sp|A5UCH1|SYR_HAEIE Arginine--tRNA ligase OS=Haemophilus influenzae (strain PittEE)
GN=argS PE=3 SV=1
Length = 577
Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 215/367 (58%), Gaps = 32/367 (8%)
Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
M+++ LSD A+ +A G + A + +FGD+Q N MA K
Sbjct: 1 MNIQSILSDKIKQAMVIA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52
Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 323
NP + AQ + N L+ + +K+E+A PGF+N+FL+ + +I + +
Sbjct: 53 -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103
Query: 324 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVG 381
G+Q K V++D+SSPN+AKEMHVGHLRSTIIGD ++R LE+LGH+V+R NHVG
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTIIGDAVARTLEFLGHNVIRANHVG 160
Query: 382 DWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441
DWGTQFGMLIA+L+ K + + DL+AFY+E+KK +DEDEIF ++A VV LQ
Sbjct: 161 DWGTQFGMLIAYLE-KMQNEHASEMELQDLEAFYREAKKHYDEDEIFAEKARNYVVKLQG 219
Query: 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLLE 498
D + W+ + D++ + Q YDRLNVTLTE+ GES Y + +V L+K+GL
Sbjct: 220 GDEYCRAMWKRLVDITMQQNQHNYDRLNVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAV 279
Query: 499 LDDGRKIMWGE---DRGSIPMTIV--KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
DDG +++ + ++ PM ++ K DGGF Y T+D+AA + R E KA+ + +D
Sbjct: 280 EDDGALVVYLDEFKNKEGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKANRALVFSDT 339
Query: 554 GQGVHFR 560
Q H +
Sbjct: 340 RQSQHMQ 346
Score = 233 bits (595), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 193/355 (54%), Gaps = 58/355 (16%)
Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
H R STIIGD ++R LE+LGH+V+R NHVGDWGTQFGMLIA+L+ K + +
Sbjct: 132 HLR----STIIGDAVARTLEFLGHNVIRANHVGDWGTQFGMLIAYLE-KMQNEHASEMEL 186
Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
DL+AFY+E+KK +DEDEIF ++A VV LQ D + W+ + D++ + Q YDRL
Sbjct: 187 QDLEAFYREAKKHYDEDEIFAEKARNYVVKLQGGDEYCRAMWKRLVDITMQQNQHNYDRL 246
Query: 678 NVTLTER---GESFYQKHMEQLVPYLEKK-------------------------GNLSLT 709
NVTLTE+ GES Y + +V L+K+ G +
Sbjct: 247 NVTLTEKDVMGESLYNPMLPSIVEDLKKQGLAVEDDGALVVYLDEFKNKEGDPMGVIVQK 306
Query: 710 KKLGIVYVT----------------------DLGQGVHFRLLEECAKKAGILNPNKTRMD 747
K G +Y T D Q H + +KAG + P+ ++
Sbjct: 307 KDGGFLYTTTDIAAAKYRYETLKANRALVFSDTRQSQHMQQAWLITRKAGYV-PDSFSLE 365
Query: 748 FVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQA 807
FG++LG+D K FKTR+G TVKL++LLDE + R+ + +KN T L+ E +A
Sbjct: 366 HKNFGMMLGKDGKPFKTRTGGTVKLADLLDEAIERATVLINEKN--TNLSNDEKQAVIEA 423
Query: 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862
+ G +KYADLS NR DYVF +D ML GNTA Y+ YAYTRI SI INS
Sbjct: 424 IGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRIRSIFNKTEINS 478
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 8/178 (4%)
Query: 942 RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
++T L+ E +A+ G +KYADLS NR DYVF +D ML GNTA Y+ YAYTRI
Sbjct: 408 KNTNLSNDEKQAVIEAIGIGSVKYADLSKNRTTDYVFDWDNMLSFEGNTAPYMQYAYTRI 467
Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
SI INS L A P++++ +KE LA LL+ + + V ++ H LC YL
Sbjct: 468 RSIFNKTEINSTALLAA----PLTIKDDKERTLAIKLLQFEEAVQTVGKEGTPHVLCAYL 523
Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
Y+++ FS FY++C + + E V RL LA T K +K+ ++L I+TV KM
Sbjct: 524 YELAGIFSSFYEHCPILNAEDEA----VKLSRLKLALLTEKTLKQGLELLGIKTVEKM 577
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
M+++ LSD A+ +A G + A + +FGD+Q N MA K
Sbjct: 1 MNIQSILSDKIKQAMVIA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVN- 127
NP + AQ + N L+ + +K+E A PGF+N+FL+ + ++ + +
Sbjct: 53 -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103
Query: 128 --GVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164
G+Q K V++D+SSPN+A++ HL S I
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKE--MHVGHLRSTI 137
>sp|B4RU34|SYR_ALTMD Arginine--tRNA ligase OS=Alteromonas macleodii (strain DSM 17117 /
Deep ecotype) GN=argS PE=3 SV=1
Length = 576
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 223/377 (59%), Gaps = 38/377 (10%)
Query: 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 264
M++ L + FT A+Q E+G + A V + +FG++Q N AMAL K K K
Sbjct: 1 MNIHALLVNRFTEALQ----EMGVENAPVPVSRSAR-PEFGEYQFNGAMALAKQLKQK-- 53
Query: 265 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ----IKDI 320
P DIA+ I V L + K+EVA PGF+NV L+ + Q + D
Sbjct: 54 ---PRDIAEKIVETV--------KLDDIASKLEVAGPGFINVHLNDAWLANQCELSLTDP 102
Query: 321 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHV 380
+ + P N ++VD+SSPN+AKEMHVGHLR+TIIGD + ++LE+LGH+V+R NH+
Sbjct: 103 RLGIAKSPEQN----IVVDYSSPNLAKEMHVGHLRTTIIGDAVVKVLEFLGHNVIRQNHM 158
Query: 381 GDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQ 440
GDWGTQFGML+AHL DK + + ++ ++DL+ FY+E+K RFDE+E F RA + VV LQ
Sbjct: 159 GDWGTQFGMLLAHLSDKLQEEVAET-ALSDLEDFYREAKVRFDEEEGFADRAREYVVKLQ 217
Query: 441 RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLEKKGLL 497
D WE DVS +++YD+LNV+LT + GES Y + ++ L+ KGL
Sbjct: 218 GGDAQCLALWEKFIDVSITHSEEVYDKLNVSLTRKDIMGESAYNDDLANVISDLKTKGLA 277
Query: 498 ELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
D G ++++ + G+ + IV KS GG+ Y T+DLAA+R R + AD + +TD
Sbjct: 278 VEDQGAQVVFIPELADKEGNPAVYIVQKSGGGYLYATTDLAAMRYRSGKLNADRTLILTD 337
Query: 553 LGQGVHFRLLEESTIIG 569
Q +HF+ ++ I+G
Sbjct: 338 ARQALHFK---QTEIVG 351
Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 196/352 (55%), Gaps = 54/352 (15%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
+TIIGD + ++LE+LGH+V+R NH+GDWGTQFGML+AHL DK + + ++ ++DL+ FY
Sbjct: 134 TTIIGDAVVKVLEFLGHNVIRQNHMGDWGTQFGMLLAHLSDKLQEEVAET-ALSDLEDFY 192
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER 684
+E+K RFDE+E F RA + VV LQ D WE DVS +++YD+LNV+LT +
Sbjct: 193 REAKVRFDEEEGFADRAREYVVKLQGGDAQCLALWEKFIDVSITHSEEVYDKLNVSLTRK 252
Query: 685 ---GESFYQKHMEQLVPYLEKKG-----------------------NLSLTKKLGIVY-- 716
GES Y + ++ L+ KG + + +K G Y
Sbjct: 253 DIMGESAYNDDLANVISDLKTKGLAVEDQGAQVVFIPELADKEGNPAVYIVQKSGGGYLY 312
Query: 717 ----------------------VTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
+TD Q +HF+ E +KAG + +T + FG++
Sbjct: 313 ATTDLAAMRYRSGKLNADRTLILTDARQALHFKQTEIVGRKAGFMKEEQT-YEHCPFGMM 371
Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
LG D K FKTR+G TVKL ELLDE + R+ + + R +L+ EL E + V G +K
Sbjct: 372 LGSDGKPFKTRTGGTVKLVELLDEAVERAGKLIAE--RDNDLSEEELKEVARKVGIGAVK 429
Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPP 866
YADLS NR DY+F++D ML GNTA YL YAYTR+ S+ R AG++ P
Sbjct: 430 YADLSKNRTTDYMFNWDSMLSFEGNTAPYLQYAYTRVKSLFRKAGVDMATMP 481
Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 8/178 (4%)
Query: 942 RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
R +L+ EL E + V G +KYADLS NR DY+F++D ML GNTA YL YAYTR+
Sbjct: 407 RDNDLSEEELKEVARKVGIGAVKYADLSKNRTTDYMFNWDSMLSFEGNTAPYLQYAYTRV 466
Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
S+ R AG++ +A + L ++E ALA L++ +V+ +V+R+ H LC YL
Sbjct: 467 KSLFRKAGVD-----MATMPVDIKLVEKQEHALAVLLMQFEEVIGMVSREATPHVLCTYL 521
Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
YD+++AF FY+ C ++ EG V RL L+ AK ++K +L I T+ KM
Sbjct: 522 YDVASAFMTFYEACPMLK---EGIEPQVRDSRLALSALVAKTLEKGLTLLGIETLEKM 576
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 26/148 (17%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
M++ L + FT A+Q E+G + A V + +FG++Q N AMAL K K K
Sbjct: 1 MNIHALLVNRFTEALQ----EMGVENAPVPVSRSAR-PEFGEYQFNGAMALAKQLKQK-- 53
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQ----MKDI 124
P DIA+ I V L + K+E A PGF+NV L+ + Q + D
Sbjct: 54 ---PRDIAEKIVETV--------KLDDIASKLEVAGPGFINVHLNDAWLANQCELSLTDP 102
Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIARK 152
+ + P N ++VD+SSPN+A++
Sbjct: 103 RLGIAKSPEQN----IVVDYSSPNLAKE 126
>sp|Q15W53|SYR_PSEA6 Arginine--tRNA ligase OS=Pseudoalteromonas atlantica (strain T6c /
ATCC BAA-1087) GN=argS PE=3 SV=1
Length = 578
Score = 251 bits (640), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 141/332 (42%), Positives = 197/332 (59%), Gaps = 29/332 (8%)
Query: 244 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 303
FGD+Q N AMAL K+ K K P DIA+ I V L + +K+EVA PGF
Sbjct: 36 FGDYQFNGAMALAKVLKQK-----PRDIAEKIVEAV--------ELDGIAEKLEVAGPGF 82
Query: 304 VNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLR----VLVDFSSPNIAKEMHVGHLRSTII 359
+N++LS+ + Q+ + P LN + + V+VD+SSPN+AKEMHVGHLR+TII
Sbjct: 83 INIYLSKEWLAAQLS----HAAADPRLNIESQPTKTVVVDYSSPNLAKEMHVGHLRTTII 138
Query: 360 GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESK 419
GD + + LE++GH V+R NH+GDWGTQFGML+AHL DK ++DL+ FY+E+K
Sbjct: 139 GDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFYREAK 198
Query: 420 KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RG 476
RFDE+E F RA + VV LQ D W+ DVS +++Y +LNV+LT G
Sbjct: 199 VRFDEEEGFADRAREYVVKLQGGDSHCLALWQNFIDVSITHSEEVYHKLNVSLTRDDIMG 258
Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDGRKIMW----GEDRGSIPMTIV-KSDGGFTYDTSD 531
ES Y + +V L+ KGL G ++++ + G+ IV KS GG+ Y T+D
Sbjct: 259 ESAYNHDLANVVSELQAKGLAVESQGAQVVFLPELADKEGNPAAYIVQKSGGGYLYATTD 318
Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLE 563
LAAIR R ++ AD + +TD Q +HF+ E
Sbjct: 319 LAAIRHRNKQLHADRTLILTDARQALHFKQTE 350
Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 188/354 (53%), Gaps = 53/354 (14%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624
+TIIGD + + LE++GH V+R NH+GDWGTQFGML+AHL DK ++DL+ FY
Sbjct: 135 TTIIGDAVVKALEFMGHKVIRQNHMGDWGTQFGMLLAHLNDKLESNQVAETALSDLEDFY 194
Query: 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE- 683
+E+K RFDE+E F RA + VV LQ D W+ DVS +++Y +LNV+LT
Sbjct: 195 REAKVRFDEEEGFADRAREYVVKLQGGDSHCLALWQNFIDVSITHSEEVYHKLNVSLTRD 254
Query: 684 --RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYV------------------------ 717
GES Y + +V L+ KG ++ +V++
Sbjct: 255 DIMGESAYNHDLANVVSELQAKGLAVESQGAQVVFLPELADKEGNPAAYIVQKSGGGYLY 314
Query: 718 -----------------------TDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV 754
TD Q +HF+ E A+KAG + P +T + FG++
Sbjct: 315 ATTDLAAIRHRNKQLHADRTLILTDARQALHFKQTELVARKAGFIEPEQT-YEHCPFGMM 373
Query: 755 LGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIK 814
LG D + FKTR+G TVKL ELLDE + R+ L R T+L+ EL + G +K
Sbjct: 374 LGNDGRPFKTRTGGTVKLVELLDEAVERAETLLS--KRETDLSSDELKVLANKIGIGAVK 431
Query: 815 YADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEP 868
YADLS NR DY+FS+D ML GNTA YL YAYTR+ SI R AG++ + P
Sbjct: 432 YADLSKNRTTDYMFSWDSMLSFEGNTAPYLQYAYTRVMSIFRKAGVDHQTLNAP 485
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 8/178 (4%)
Query: 942 RHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRI 1001
R T+L+ EL + G +KYADLS NR DY+FS+D ML GNTA YL YAYTR+
Sbjct: 409 RETDLSSDELKVLANKIGIGAVKYADLSKNRTTDYMFSWDSMLSFEGNTAPYLQYAYTRV 468
Query: 1002 ASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL 1061
SI R AG++ + L + P+SL+ +E LA L+ + + V + H LC YL
Sbjct: 469 MSIFRKAGVDHQTL-----NAPISLDAPQEKILAVKQLQYVEAINQVIAEGTPHVLCTYL 523
Query: 1062 YDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119
Y++++ F FY+ C ++ +G + V R+ LA TAK ++ +L I T+ +M
Sbjct: 524 YELASLFMSFYEACPMLK---DGIEQDVRDSRMTLAALTAKTLQSGLSLLGIDTMERM 578
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 21/109 (19%)
Query: 48 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGF 107
FGD+Q N AMAL K+ K K P DIA+ I V L + +K+E A PGF
Sbjct: 36 FGDYQFNGAMALAKVLKQK-----PRDIAEKIVEAV--------ELDGIAEKLEVAGPGF 82
Query: 108 VNVFLSRVYAGEQMKDIIVNGVQPPTLNKKLR----VLVDFSSPNIARK 152
+N++LS+ + Q+ + P LN + + V+VD+SSPN+A++
Sbjct: 83 INIYLSKEWLAAQLS----HAAADPRLNIESQPTKTVVVDYSSPNLAKE 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,261,340
Number of Sequences: 539616
Number of extensions: 18283171
Number of successful extensions: 60909
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 54315
Number of HSP's gapped (non-prelim): 3605
length of query: 1119
length of database: 191,569,459
effective HSP length: 128
effective length of query: 991
effective length of database: 122,498,611
effective search space: 121396123501
effective search space used: 121396123501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)