Query psy6783
Match_columns 1119
No_of_seqs 464 out of 2376
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 18:18:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4426|consensus 100.0 2E-128 3E-133 1062.6 56.1 584 206-1119 72-656 (656)
2 COG0018 ArgS Arginyl-tRNA synt 100.0 5E-124 1E-128 1115.0 58.7 565 205-1119 1-577 (577)
3 PLN02286 arginine-tRNA ligase 100.0 4E-122 8E-127 1112.1 64.7 570 211-1119 3-576 (576)
4 PRK12451 arginyl-tRNA syntheta 100.0 1E-114 2E-119 1046.0 61.0 556 206-1119 2-562 (562)
5 TIGR00456 argS arginyl-tRNA sy 100.0 1E-104 3E-109 961.7 60.2 556 208-1119 2-566 (566)
6 PRK01611 argS arginyl-tRNA syn 100.0 3.9E-94 8.4E-99 861.2 54.6 498 205-1119 3-507 (507)
7 KOG1195|consensus 100.0 2.5E-92 5.5E-97 795.4 43.0 555 210-1119 4-567 (567)
8 PF00750 tRNA-synt_1d: tRNA sy 100.0 3.3E-72 7.2E-77 643.7 21.4 342 317-830 2-354 (354)
9 cd00671 ArgRS_core catalytic c 100.0 5.9E-46 1.3E-50 398.7 23.7 173 335-561 1-175 (212)
10 PF00750 tRNA-synt_1d: tRNA sy 100.0 1.6E-41 3.5E-46 390.1 18.2 304 554-980 32-354 (354)
11 KOG4426|consensus 100.0 2.8E-40 6E-45 365.4 22.7 246 556-890 202-447 (656)
12 KOG1195|consensus 100.0 1.7E-40 3.6E-45 376.0 18.5 242 555-884 123-366 (567)
13 PRK12451 arginyl-tRNA syntheta 100.0 5.9E-37 1.3E-41 370.9 26.1 257 556-902 127-390 (562)
14 PLN02286 arginine-tRNA ligase 100.0 2.5E-36 5.5E-41 365.8 25.7 259 556-902 131-397 (576)
15 COG0018 ArgS Arginyl-tRNA synt 100.0 4.4E-35 9.6E-40 351.1 23.5 260 556-902 131-402 (577)
16 TIGR00456 argS arginyl-tRNA sy 100.0 4.1E-32 9E-37 329.8 24.2 258 556-903 126-392 (566)
17 cd07956 Anticodon_Ia_Arg Antic 100.0 4.2E-31 9.1E-36 270.7 15.1 155 957-1119 2-156 (156)
18 PRK01611 argS arginyl-tRNA syn 99.9 3E-25 6.6E-30 267.0 15.8 148 10-186 4-153 (507)
19 PF05746 DALR_1: DALR anticodo 99.9 1.6E-24 3.5E-29 211.4 11.9 119 994-1119 1-119 (119)
20 cd00671 ArgRS_core catalytic c 99.9 2.8E-21 6.1E-26 207.9 18.7 191 556-889 14-205 (212)
21 smart00836 DALR_1 DALR anticod 99.9 6.6E-22 1.4E-26 194.1 12.4 122 994-1119 1-122 (122)
22 PTZ00399 cysteinyl-tRNA-synthe 99.8 3.3E-17 7.2E-22 201.2 27.5 132 962-1119 337-469 (651)
23 TIGR00398 metG methionyl-tRNA 99.7 7.3E-15 1.6E-19 178.6 34.8 116 337-504 2-120 (530)
24 PRK11893 methionyl-tRNA synthe 99.7 3.3E-14 7.1E-19 172.1 35.1 107 962-1076 321-429 (511)
25 PRK00133 metG methionyl-tRNA s 99.7 1.1E-13 2.3E-18 172.6 34.7 119 334-504 2-123 (673)
26 PF03485 Arg_tRNA_synt_N: Argi 99.6 1.9E-16 4.1E-21 146.4 6.4 84 14-112 2-85 (85)
27 cd00802 class_I_aaRS_core cata 99.6 1.7E-15 3.6E-20 153.2 11.1 55 338-392 1-55 (143)
28 PF03485 Arg_tRNA_synt_N: Argi 99.6 1.1E-15 2.4E-20 141.4 8.8 83 210-308 2-85 (85)
29 PRK12268 methionyl-tRNA synthe 99.6 1.9E-12 4.1E-17 158.5 34.3 119 334-504 3-125 (556)
30 PRK00260 cysS cysteinyl-tRNA s 99.5 1.1E-11 2.5E-16 148.2 31.7 124 333-508 21-146 (463)
31 PLN02946 cysteine-tRNA ligase 99.5 3E-11 6.6E-16 145.4 31.1 124 332-507 77-202 (557)
32 TIGR00464 gltX_bact glutamyl-t 99.4 8.4E-13 1.8E-17 157.5 11.2 93 734-838 219-313 (470)
33 PRK01406 gltX glutamyl-tRNA sy 99.3 4.4E-12 9.4E-17 151.6 10.6 93 734-839 229-323 (476)
34 cd00812 LeuRS_core catalytic c 99.3 5.5E-11 1.2E-15 135.7 17.6 117 335-503 1-122 (314)
35 TIGR00435 cysS cysteinyl-tRNA 99.3 1.7E-10 3.6E-15 138.1 21.0 124 333-508 19-145 (465)
36 PRK12267 methionyl-tRNA synthe 99.3 2.1E-09 4.6E-14 134.0 31.0 116 334-501 4-122 (648)
37 cd00668 Ile_Leu_Val_MetRS_core 99.3 7.5E-11 1.6E-15 134.4 16.6 129 336-503 2-135 (312)
38 PLN02224 methionine-tRNA ligas 99.2 3.9E-09 8.4E-14 129.8 30.4 120 330-501 65-187 (616)
39 PRK06039 ileS isoleucyl-tRNA s 99.1 2.9E-07 6.2E-12 119.7 37.4 132 333-499 40-176 (975)
40 cd00674 LysRS_core_class_I cat 99.0 6.9E-09 1.5E-13 119.6 18.5 51 334-385 19-69 (353)
41 PRK14895 gltX glutamyl-tRNA sy 99.0 1.3E-09 2.8E-14 130.1 12.1 40 515-560 172-211 (513)
42 cd00814 MetRS_core catalytic c 98.9 5.4E-09 1.2E-13 119.7 10.4 115 336-502 2-119 (319)
43 PRK14536 cysS cysteinyl-tRNA s 98.9 2.3E-08 5.1E-13 119.5 14.7 133 332-506 20-154 (490)
44 cd00818 IleRS_core catalytic c 98.8 4.6E-08 1E-12 113.0 12.5 134 335-503 2-140 (338)
45 cd07956 Anticodon_Ia_Arg Antic 98.7 4.8E-09 1E-13 107.9 1.5 54 807-860 2-55 (156)
46 PRK14534 cysS cysteinyl-tRNA s 98.7 6.7E-07 1.4E-11 106.8 18.9 130 334-505 20-151 (481)
47 cd00817 ValRS_core catalytic c 98.7 1.2E-07 2.5E-12 111.4 12.4 133 335-503 2-139 (382)
48 cd00672 CysRS_core catalytic c 98.6 5.5E-07 1.2E-11 97.5 14.9 58 333-390 18-75 (213)
49 PRK12418 cysteinyl-tRNA synthe 98.6 5.9E-07 1.3E-11 104.8 14.8 119 332-502 6-126 (384)
50 PRK00750 lysK lysyl-tRNA synth 98.5 4.4E-06 9.6E-11 101.5 21.5 50 335-385 24-73 (510)
51 TIGR03447 mycothiol_MshC cyste 98.5 7.8E-07 1.7E-11 104.4 13.9 118 333-502 34-153 (411)
52 COG0143 MetG Methionyl-tRNA sy 98.5 5.7E-07 1.2E-11 109.0 12.1 117 333-501 4-123 (558)
53 PRK13208 valS valyl-tRNA synth 98.5 1.3E-06 2.7E-11 111.9 14.9 132 333-503 37-173 (800)
54 PF09334 tRNA-synt_1g: tRNA sy 98.3 2.9E-06 6.2E-11 100.0 10.9 113 337-501 2-117 (391)
55 TIGR00467 lysS_arch lysyl-tRNA 98.3 1.4E-05 3.1E-10 96.7 16.9 49 334-383 18-66 (515)
56 PRK14535 cysS cysteinyl-tRNA s 98.2 1.1E-05 2.4E-10 98.9 14.5 123 332-506 245-370 (699)
57 TIGR00422 valS valyl-tRNA synt 98.2 9.8E-06 2.1E-10 104.6 14.3 133 333-501 32-169 (861)
58 TIGR00396 leuS_bact leucyl-tRN 98.2 1.3E-05 2.9E-10 102.7 15.3 119 332-503 28-151 (842)
59 PLN02610 probable methionyl-tR 98.2 7.1E-06 1.5E-10 104.2 12.4 116 334-501 17-136 (801)
60 PLN02381 valyl-tRNA synthetase 98.2 1.6E-05 3.5E-10 104.0 15.2 134 333-501 127-265 (1066)
61 PLN02943 aminoacyl-tRNA ligase 98.1 1.1E-05 2.3E-10 104.9 11.7 134 333-502 87-225 (958)
62 PTZ00419 valyl-tRNA synthetase 98.1 2.6E-05 5.7E-10 102.0 15.2 136 332-502 58-198 (995)
63 PRK14900 valS valyl-tRNA synth 98.1 2.5E-05 5.3E-10 102.4 14.9 134 333-501 47-185 (1052)
64 PRK00390 leuS leucyl-tRNA synt 98.1 3E-05 6.6E-10 99.2 14.9 117 334-503 33-154 (805)
65 PLN02563 aminoacyl-tRNA ligase 98.1 1.6E-05 3.5E-10 102.6 12.3 118 332-502 109-232 (963)
66 PRK05729 valS valyl-tRNA synth 98.0 3.3E-05 7.1E-10 99.9 13.9 134 333-502 35-173 (874)
67 TIGR00395 leuS_arch leucyl-tRN 98.0 1.7E-05 3.8E-10 102.9 11.4 139 333-499 24-167 (938)
68 COG0215 CysS Cysteinyl-tRNA sy 98.0 4E-05 8.6E-10 90.5 13.1 127 326-505 14-143 (464)
69 PF01406 tRNA-synt_1e: tRNA sy 98.0 3.6E-05 7.9E-10 86.6 12.3 125 332-508 5-132 (300)
70 PF00133 tRNA-synt_1: tRNA syn 98.0 2E-05 4.4E-10 97.9 11.4 134 332-500 21-159 (601)
71 PRK05743 ileS isoleucyl-tRNA s 98.0 3.1E-05 6.8E-10 100.3 11.9 130 333-501 48-182 (912)
72 PTZ00427 isoleucine-tRNA ligas 98.0 9E-05 2E-09 97.7 15.9 134 333-501 101-239 (1205)
73 cd00802 class_I_aaRS_core cata 97.9 1.2E-05 2.5E-10 81.6 6.0 133 556-766 11-143 (143)
74 TIGR00392 ileS isoleucyl-tRNA 97.9 4.6E-05 9.9E-10 98.6 12.6 134 333-501 35-173 (861)
75 PRK12558 glutamyl-tRNA synthet 97.9 1.2E-05 2.7E-10 95.4 5.6 44 456-499 52-96 (445)
76 COG0495 LeuS Leucyl-tRNA synth 97.9 4.4E-05 9.6E-10 95.9 10.6 118 334-503 34-156 (814)
77 PLN02882 aminoacyl-tRNA ligase 97.9 7.5E-05 1.6E-09 98.5 12.8 133 334-501 38-175 (1159)
78 PRK13804 ileS isoleucyl-tRNA s 97.8 8.6E-05 1.9E-09 96.6 12.0 133 333-501 53-190 (961)
79 cd00814 MetRS_core catalytic c 97.8 7.1E-05 1.5E-09 86.0 10.1 104 556-712 14-120 (319)
80 PLN02843 isoleucyl-tRNA synthe 97.8 0.00012 2.5E-09 95.5 12.5 132 332-501 30-166 (974)
81 cd00808 GluRS_core catalytic c 97.7 0.00016 3.4E-09 79.7 11.0 25 342-366 7-31 (239)
82 COG0525 ValS Valyl-tRNA synthe 97.7 0.00024 5.2E-09 89.5 13.5 130 334-501 33-169 (877)
83 PLN02959 aminoacyl-tRNA ligase 97.6 0.00039 8.5E-09 91.5 12.4 163 333-499 44-239 (1084)
84 TIGR00435 cysS cysteinyl-tRNA 97.5 0.00046 9.9E-09 83.3 11.8 111 556-719 34-147 (465)
85 TIGR00398 metG methionyl-tRNA 97.4 0.00051 1.1E-08 84.3 10.4 129 938-1077 328-458 (530)
86 PRK00260 cysS cysteinyl-tRNA s 97.4 0.00039 8.4E-09 84.0 8.6 109 556-717 36-146 (463)
87 COG0143 MetG Methionyl-tRNA sy 97.3 0.03 6.5E-07 68.8 24.0 127 938-1075 334-463 (558)
88 KOG2007|consensus 97.3 0.0027 5.8E-08 74.8 13.3 128 332-508 52-184 (586)
89 PRK12410 glutamylglutaminyl-tR 97.1 0.00045 9.8E-09 82.0 4.8 26 342-367 5-30 (433)
90 PLN02610 probable methionyl-tR 97.1 0.26 5.7E-06 63.5 29.5 131 938-1077 349-486 (801)
91 PF00749 tRNA-synt_1c: tRNA sy 97.1 0.0018 3.8E-08 74.5 8.9 24 342-365 7-30 (314)
92 PLN02627 glutamyl-tRNA synthet 97.1 0.0009 2E-08 81.0 6.8 33 333-366 43-75 (535)
93 PRK12267 methionyl-tRNA synthe 97.0 0.0023 5E-08 80.6 10.4 128 938-1076 300-429 (648)
94 KOG1149|consensus 96.9 0.0021 4.5E-08 74.5 8.2 30 735-769 260-289 (524)
95 cd09287 GluRS_non_core catalyt 96.9 0.0015 3.2E-08 72.0 6.1 25 341-365 6-30 (240)
96 PRK12300 leuS leucyl-tRNA synt 96.8 0.0032 6.8E-08 82.0 8.8 123 349-499 1-128 (897)
97 KOG0435|consensus 96.7 0.0037 7.9E-08 75.7 8.1 116 333-501 57-177 (876)
98 PRK11893 methionyl-tRNA synthe 96.6 0.007 1.5E-07 74.0 10.2 104 556-712 15-121 (511)
99 COG1384 LysS Lysyl-tRNA synthe 96.6 0.028 6E-07 67.3 13.9 51 334-385 19-69 (521)
100 cd00668 Ile_Leu_Val_MetRS_core 96.6 0.01 2.2E-07 68.2 10.2 117 556-712 14-135 (312)
101 PRK12418 cysteinyl-tRNA synthe 96.5 0.017 3.6E-07 68.2 11.7 103 556-711 22-126 (384)
102 cd00818 IleRS_core catalytic c 96.5 0.011 2.4E-07 68.7 10.2 121 556-712 15-140 (338)
103 cd00817 ValRS_core catalytic c 96.5 0.013 2.7E-07 69.4 10.3 121 556-714 15-141 (382)
104 cd00807 GlnRS_core catalytic c 96.4 0.0014 3E-08 72.1 1.4 39 461-499 56-95 (238)
105 TIGR00392 ileS isoleucyl-tRNA 96.4 0.029 6.4E-07 73.0 13.7 46 1028-1073 694-740 (861)
106 PLN02224 methionine-tRNA ligas 96.3 0.016 3.4E-07 72.4 10.6 106 556-714 83-191 (616)
107 cd00812 LeuRS_core catalytic c 96.3 0.017 3.7E-07 66.5 10.2 104 556-712 14-122 (314)
108 TIGR03838 queuosine_YadB gluta 96.3 0.0018 3.9E-08 72.8 2.1 39 461-499 55-95 (272)
109 PRK04156 gltX glutamyl-tRNA sy 96.2 0.0079 1.7E-07 73.8 7.1 32 333-365 99-130 (567)
110 cd00418 GlxRS_core catalytic c 96.2 0.0016 3.5E-08 71.4 1.1 26 342-367 7-32 (230)
111 PRK14534 cysS cysteinyl-tRNA s 96.2 0.019 4.2E-07 69.3 9.9 125 547-714 23-151 (481)
112 TIGR03447 mycothiol_MshC cyste 96.2 0.031 6.6E-07 66.4 11.3 103 556-711 49-153 (411)
113 KOG0432|consensus 96.1 0.039 8.5E-07 69.1 12.2 53 333-385 74-126 (995)
114 COG0215 CysS Cysteinyl-tRNA sy 96.1 0.083 1.8E-06 63.1 14.2 118 546-717 23-146 (464)
115 PLN02946 cysteine-tRNA ligase 96.0 0.043 9.2E-07 67.5 11.7 119 546-717 81-203 (557)
116 TIGR00463 gltX_arch glutamyl-t 95.9 0.011 2.3E-07 72.6 6.0 31 334-365 92-122 (560)
117 PRK05729 valS valyl-tRNA synth 95.8 0.14 3E-06 66.9 16.1 47 1028-1074 600-647 (874)
118 PTZ00402 glutamyl-tRNA synthet 95.8 0.0047 1E-07 75.7 2.4 34 333-367 50-83 (601)
119 PRK00133 metG methionyl-tRNA s 95.8 0.04 8.7E-07 69.8 10.8 123 938-1077 330-457 (673)
120 PRK14536 cysS cysteinyl-tRNA s 95.8 0.039 8.3E-07 67.0 10.0 126 547-715 25-154 (490)
121 COG0008 GlnS Glutamyl- and glu 95.8 0.0058 1.3E-07 73.5 2.9 40 461-500 64-105 (472)
122 PLN03233 putative glutamate-tR 95.8 0.0053 1.1E-07 74.5 2.6 33 334-367 10-42 (523)
123 PLN02907 glutamate-tRNA ligase 95.7 0.0054 1.2E-07 77.5 2.6 32 334-366 212-243 (722)
124 PF09334 tRNA-synt_1g: tRNA sy 95.7 0.059 1.3E-06 64.0 11.0 107 556-715 13-122 (391)
125 PTZ00437 glutaminyl-tRNA synth 95.7 0.007 1.5E-07 73.7 3.1 33 334-367 50-82 (574)
126 PRK12268 methionyl-tRNA synthe 95.6 0.044 9.6E-07 67.9 10.2 126 938-1077 335-464 (556)
127 PRK05710 glutamyl-Q tRNA(Asp) 95.6 0.0035 7.6E-08 71.4 0.4 39 461-499 60-100 (299)
128 PRK14535 cysS cysteinyl-tRNA s 95.6 0.073 1.6E-06 66.3 11.6 118 547-717 250-372 (699)
129 PRK14703 glutaminyl-tRNA synth 95.6 0.013 2.8E-07 74.3 5.3 51 309-367 12-62 (771)
130 KOG0436|consensus 95.5 3.8 8.2E-05 48.3 23.8 116 954-1076 358-477 (578)
131 PRK05347 glutaminyl-tRNA synth 95.5 0.016 3.6E-07 70.6 5.3 31 335-366 29-59 (554)
132 PTZ00399 cysteinyl-tRNA-synthe 95.1 0.056 1.2E-06 68.0 8.7 219 556-859 73-383 (651)
133 PF01406 tRNA-synt_1e: tRNA sy 94.4 0.4 8.7E-06 54.7 12.2 117 547-716 10-130 (300)
134 COG0060 IleS Isoleucyl-tRNA sy 94.2 0.16 3.5E-06 65.5 9.6 157 938-1112 603-764 (933)
135 TIGR00440 glnS glutaminyl-tRNA 94.0 0.089 1.9E-06 64.2 6.4 26 342-367 6-31 (522)
136 PRK13208 valS valyl-tRNA synth 93.8 0.24 5.1E-06 64.3 10.4 121 938-1074 534-656 (800)
137 cd00418 GlxRS_core catalytic c 93.8 0.11 2.5E-06 57.1 6.4 101 662-768 48-160 (230)
138 TIGR00396 leuS_bact leucyl-tRN 93.5 0.27 5.8E-06 64.0 10.0 104 556-712 43-151 (842)
139 PRK01233 glyS glycyl-tRNA synt 93.5 0.44 9.6E-06 60.2 11.5 107 991-1107 568-674 (682)
140 TIGR00211 glyS glycyl-tRNA syn 93.3 0.41 9E-06 60.5 10.8 108 991-1108 578-685 (691)
141 PLN02859 glutamine-tRNA ligase 93.3 0.075 1.6E-06 67.2 4.3 32 335-367 264-295 (788)
142 PRK00390 leuS leucyl-tRNA synt 92.7 0.49 1.1E-05 61.3 10.6 104 953-1072 583-687 (805)
143 PLN02563 aminoacyl-tRNA ligase 92.5 0.47 1E-05 62.4 10.1 103 556-711 125-232 (963)
144 cd00672 CysRS_core catalytic c 92.4 0.15 3.1E-06 55.7 4.6 38 144-187 25-62 (213)
145 KOG0436|consensus 92.4 0.54 1.2E-05 55.0 9.2 111 344-506 49-164 (578)
146 COG0751 GlyS Glycyl-tRNA synth 91.9 3.4 7.3E-05 51.9 15.8 181 892-1106 499-682 (691)
147 PRK13804 ileS isoleucyl-tRNA s 91.6 2.6 5.6E-05 55.9 15.5 45 1030-1074 712-757 (961)
148 PRK14900 valS valyl-tRNA synth 91.5 0.77 1.7E-05 61.2 10.4 126 938-1074 539-666 (1052)
149 PRK14908 glycyl-tRNA synthetas 91.3 1 2.3E-05 58.7 11.0 102 991-1107 893-994 (1000)
150 TIGR00422 valS valyl-tRNA synt 90.3 0.93 2E-05 59.3 9.6 123 938-1073 526-650 (861)
151 PLN02943 aminoacyl-tRNA ligase 90.2 1 2.2E-05 59.5 9.8 160 938-1112 584-755 (958)
152 cd00674 LysRS_core_class_I cat 89.9 1.1 2.3E-05 52.7 8.6 59 116-188 3-62 (353)
153 COG0495 LeuS Leucyl-tRNA synth 88.8 0.23 4.9E-06 63.5 2.3 41 139-185 35-75 (814)
154 PF00133 tRNA-synt_1: tRNA syn 88.6 1.6 3.5E-05 54.8 9.5 118 556-709 37-159 (601)
155 PRK05743 ileS isoleucyl-tRNA s 87.9 2 4.4E-05 56.6 10.1 124 939-1074 594-719 (912)
156 COG0525 ValS Valyl-tRNA synthe 87.8 13 0.00029 48.2 16.7 77 1028-1112 604-683 (877)
157 PRK12558 glutamyl-tRNA synthet 86.2 0.49 1.1E-05 57.0 2.9 48 661-708 48-96 (445)
158 PLN02381 valyl-tRNA synthetase 85.9 0.77 1.7E-05 61.2 4.7 45 137-187 127-171 (1066)
159 PTZ00419 valyl-tRNA synthetase 85.6 0.83 1.8E-05 60.7 4.9 44 137-186 59-102 (995)
160 PF01921 tRNA-synt_1f: tRNA sy 85.4 0.92 2E-05 53.1 4.5 51 333-384 22-72 (360)
161 cd07375 Anticodon_Ia_like Anti 84.9 12 0.00027 35.2 11.5 76 994-1075 10-85 (117)
162 KOG0434|consensus 84.3 3.2 7E-05 51.4 8.4 123 342-499 46-173 (1070)
163 PRK12300 leuS leucyl-tRNA synt 84.1 4.2 9.2E-05 53.6 10.2 115 938-1073 578-694 (897)
164 TIGR00395 leuS_arch leucyl-tRN 82.6 0.9 2E-05 59.9 3.2 43 138-186 25-67 (938)
165 PRK00750 lysK lysyl-tRNA synth 82.1 1.6 3.4E-05 53.8 4.9 61 115-188 6-66 (510)
166 PLN02843 isoleucyl-tRNA synthe 82.0 5.9 0.00013 52.7 10.3 108 957-1073 637-745 (974)
167 KOG0433|consensus 80.7 9.9 0.00021 47.9 10.7 116 345-500 66-188 (937)
168 TIGR00467 lysS_arch lysyl-tRNA 75.6 3.6 7.7E-05 50.8 5.1 57 117-187 4-60 (515)
169 cd09287 GluRS_non_core catalyt 75.1 1.8 4E-05 48.1 2.3 23 147-175 8-30 (240)
170 KOG1147|consensus 74.9 2.5 5.3E-05 51.1 3.3 29 335-364 200-228 (712)
171 COG0060 IleS Isoleucyl-tRNA sy 74.8 16 0.00035 47.9 10.8 36 740-778 584-619 (933)
172 PRK04156 gltX glutamyl-tRNA sy 74.7 1.9 4.1E-05 53.5 2.5 32 137-175 99-130 (567)
173 PF05746 DALR_1: DALR anticodo 74.7 2.8 6.1E-05 40.8 3.2 20 844-863 1-20 (119)
174 PRK06039 ileS isoleucyl-tRNA s 74.6 2.1 4.6E-05 56.8 3.1 35 147-187 50-84 (975)
175 PRK05347 glutaminyl-tRNA synth 72.6 5 0.00011 49.6 5.3 47 115-175 12-58 (554)
176 PLN02882 aminoacyl-tRNA ligase 72.5 2.5 5.3E-05 57.0 2.9 36 147-188 47-82 (1159)
177 PTZ00427 isoleucine-tRNA ligas 71.2 2.7 6E-05 56.6 2.9 36 147-188 111-146 (1205)
178 PF01921 tRNA-synt_1f: tRNA sy 69.9 4.4 9.6E-05 47.6 3.9 62 115-186 2-64 (360)
179 PRK14703 glutaminyl-tRNA synth 68.5 7.6 0.00017 50.0 5.9 49 113-175 12-60 (771)
180 PLN02959 aminoacyl-tRNA ligase 68.4 5 0.00011 53.9 4.4 43 138-186 45-87 (1084)
181 cd00807 GlnRS_core catalytic c 67.9 3.2 7E-05 46.1 2.1 25 146-176 7-31 (238)
182 PF00749 tRNA-synt_1c: tRNA sy 65.3 3.4 7.4E-05 47.8 1.8 24 146-175 7-30 (314)
183 TIGR00463 gltX_arch glutamyl-t 65.2 3.8 8.1E-05 50.9 2.2 31 138-175 92-122 (560)
184 TIGR03838 queuosine_YadB gluta 65.2 4 8.6E-05 46.4 2.2 24 146-175 6-29 (272)
185 KOG0435|consensus 64.4 2.3 4.9E-05 52.7 0.1 43 136-185 56-98 (876)
186 KOG1148|consensus 63.9 9.9 0.00021 46.7 5.2 61 333-394 246-334 (764)
187 KOG1247|consensus 62.7 14 0.0003 43.8 5.9 116 332-500 12-132 (567)
188 COG0008 GlnS Glutamyl- and glu 62.1 4.7 0.0001 49.1 2.2 29 140-175 10-38 (472)
189 smart00836 DALR_1 DALR anticod 59.8 4.9 0.00011 39.4 1.5 17 844-860 1-17 (122)
190 cd00808 GluRS_core catalytic c 58.8 5.9 0.00013 44.1 2.1 22 745-768 148-169 (239)
191 PLN03233 putative glutamate-tR 58.3 6 0.00013 48.8 2.2 30 139-175 11-40 (523)
192 PRK05710 glutamyl-Q tRNA(Asp) 56.6 6.6 0.00014 45.2 2.1 24 146-175 11-34 (299)
193 PTZ00437 glutaminyl-tRNA synth 55.7 7 0.00015 48.5 2.2 31 139-176 51-81 (574)
194 TIGR00440 glnS glutaminyl-tRNA 55.3 7.2 0.00016 48.1 2.2 24 146-175 6-29 (522)
195 PTZ00402 glutamyl-tRNA synthet 54.2 7.6 0.00017 48.5 2.2 32 137-175 50-81 (601)
196 KOG2007|consensus 53.7 1E+02 0.0022 37.8 11.1 113 556-717 68-184 (586)
197 PRK12410 glutamylglutaminyl-tR 52.2 8.6 0.00019 46.5 2.1 23 147-175 6-28 (433)
198 PLN02907 glutamate-tRNA ligase 51.8 8.6 0.00019 49.4 2.2 31 138-175 212-242 (722)
199 TIGR00464 gltX_bact glutamyl-t 46.6 12 0.00026 45.8 2.3 60 515-590 173-232 (470)
200 PRK01406 gltX glutamyl-tRNA sy 45.8 13 0.00028 45.7 2.3 57 515-588 183-240 (476)
201 PLN02859 glutamine-tRNA ligase 43.4 14 0.00031 47.5 2.2 31 139-176 264-294 (788)
202 PRK14895 gltX glutamyl-tRNA sy 42.8 15 0.00033 45.3 2.3 24 146-175 10-33 (513)
203 PRK12285 tryptophanyl-tRNA syn 41.8 6.8E+02 0.015 29.9 16.1 57 719-780 210-271 (368)
204 PRK08560 tyrosyl-tRNA syntheta 40.7 20 0.00043 41.9 2.7 42 340-387 34-75 (329)
205 PF15540 Toxin_62: Putative to 40.2 24 0.00052 34.2 2.7 31 131-161 45-87 (113)
206 cd00805 TyrRS_core catalytic c 39.5 18 0.00039 41.0 2.1 42 340-387 4-46 (269)
207 PLN02627 glutamyl-tRNA synthet 38.8 19 0.00041 44.6 2.3 32 137-175 43-74 (535)
208 PTZ00126 tyrosyl-tRNA syntheta 37.0 29 0.00062 41.5 3.3 43 340-387 70-112 (383)
209 TIGR00233 trpS tryptophanyl-tR 36.0 23 0.0005 41.4 2.3 40 340-385 6-45 (328)
210 COG1384 LysS Lysyl-tRNA synthe 36.0 28 0.0006 42.7 3.0 59 116-188 4-62 (521)
211 TIGR00234 tyrS tyrosyl-tRNA sy 31.9 39 0.00084 40.3 3.3 43 340-388 34-77 (377)
212 PTZ00348 tyrosyl-tRNA syntheta 28.6 46 0.001 42.6 3.3 43 340-387 36-78 (682)
213 PF08373 RAP: RAP domain; Int 27.9 35 0.00077 29.0 1.6 20 574-594 25-44 (58)
214 KOG0432|consensus 26.6 47 0.001 43.0 2.9 38 145-186 80-117 (995)
215 COG0180 TrpS Tryptophanyl-tRNA 25.0 70 0.0015 37.2 3.7 57 722-781 155-219 (314)
216 cd00395 Tyr_Trp_RS_core cataly 25.0 55 0.0012 37.2 2.9 25 752-776 189-213 (273)
217 PRK13354 tyrosyl-tRNA syntheta 24.9 51 0.0011 39.7 2.7 45 338-388 35-80 (410)
218 PRK05912 tyrosyl-tRNA syntheta 24.6 61 0.0013 39.1 3.3 44 339-388 36-80 (408)
219 PF10007 DUF2250: Uncharacteri 22.6 97 0.0021 29.7 3.5 52 483-536 37-88 (92)
220 PF00579 tRNA-synt_1b: tRNA sy 21.2 47 0.001 37.9 1.4 31 749-779 185-217 (292)
221 PRK00927 tryptophanyl-tRNA syn 21.2 50 0.0011 38.6 1.6 38 340-383 5-42 (333)
222 cd00806 TrpRS_core catalytic c 20.6 82 0.0018 36.0 3.2 38 340-383 3-41 (280)
223 KOG0434|consensus 20.6 2.6E+02 0.0057 35.8 7.4 40 668-707 128-172 (1070)
224 PRK12282 tryptophanyl-tRNA syn 20.1 78 0.0017 37.1 2.9 40 340-386 6-46 (333)
No 1
>KOG4426|consensus
Probab=100.00 E-value=1.5e-128 Score=1062.62 Aligned_cols=584 Identities=61% Similarity=1.012 Sum_probs=551.0
Q ss_pred cHHHHHHHHHHHHHHHhcCcCCCCcceEeecCcccccCCccchhchHHHHHHHhhccCCCCCHHHHHHHHHHhhcccccC
Q psy6783 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELAT 285 (1119)
Q Consensus 206 ~i~~~l~~~i~~al~~~~~~~~~~~~~ve~p~~~~~~~~GD~atn~Am~lAK~~k~~~~~~~P~~IA~~i~~~l~~~l~~ 285 (1119)
||+.++...+..+|+.++|+..+.++.|.+++++ +|||||||.||.|++.+|.++.+++|++||++|..+ +|.
T Consensus 72 ni~~~L~~lF~~aik~a~Pd~~~vp~liaps~~~---kFGDYQCNnAMgl~~~lK~kg~~~~P~~va~~l~~~----lP~ 144 (656)
T KOG4426|consen 72 NIFRRLQSLFDVAIKLAFPDLPDVPLLIAPSPNA---KFGDYQCNNAMGLSSKLKGKGINKRPRDVAQELQKH----LPT 144 (656)
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCceeccCccc---ccccccccchhhHHHHHhhcCCccCcHHHHHHHHhh----CCc
Confidence 8999999999999999999876677788888777 999999999999999999888888999999999999 887
Q ss_pred CcccccceeeEEEeCCeEEEEEeCHHHHHHHHHHHHHcCCCCCCCCCCcEEEEEeeCCCCCCCccccccchhcHHHHHHH
Q psy6783 286 NPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISR 365 (1119)
Q Consensus 286 ~~~~~~~ie~vevagpGFINf~L~~~~~~~~l~~il~~g~~~~~~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLar 365 (1119)
+ +.||+++||||||||++|+.+|....+..++.+|...+.+. .++|+|||||||++|.|||||+|||||||+|||
T Consensus 145 s----e~vEk~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~~P~l~-~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~R 219 (656)
T KOG4426|consen 145 S----EMVEKCEIAGPGFINVFLSKDYMSKQISNLLVNGVKLPTLS-VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCR 219 (656)
T ss_pred h----hhhhhhcccCCceEEEEechHHHHHHHHHHHHcCCCCcccc-eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHH
Confidence 7 89999999999999999999999999999999999887764 489999999999999999999999999999999
Q ss_pred HHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChh
Q psy6783 366 LLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445 (1119)
Q Consensus 366 il~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e 445 (1119)
+|++.||+|.|.|||||||||||||+++++.+||+.....++|.||.-+|++.+++|++||+|+++|++++++||.|||.
T Consensus 220 llE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~ 299 (656)
T KOG4426|consen 220 LLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPD 299 (656)
T ss_pred HHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCCh
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcEEeccchhhhhHHHHHHHHHHHHCCCeEeeCCCeEEEcCCCCCCCeEEEecCCCc
Q psy6783 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGF 525 (1119)
Q Consensus 446 ~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~geS~y~~~v~~vi~~L~~kG~~~e~dGA~~~~~ddkd~~~~VL~KSDGt~ 525 (1119)
+++.|..+|++|+++|+.+|++|+|++.+.|||||++.+.+++++|+.+|++.++||+.++|.++-+ .|..++||||++
T Consensus 300 ~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GESFYq~~m~~vveel~~kglvee~~Gr~i~f~~g~~-IPLtvVKSDGGf 378 (656)
T KOG4426|consen 300 IRKAWALICDVSRKEFQKVYNRLDISLKERGESFYQDRMAEVVEELKSKGLVEEDDGRRIMFPEGCD-IPLTVVKSDGGF 378 (656)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchHhhcchhhhhhHHHHHHHHHhcCCceeecCCceEeccCCCC-cceEEEecCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 799999999999
Q ss_pred ccchhhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhh
Q psy6783 526 TYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD 605 (1119)
Q Consensus 526 tY~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~ 605 (1119)
||.|+|+|+++||+.+.++||+|||||++|+.||..
T Consensus 379 tYdtsDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t-------------------------------------------- 414 (656)
T KOG4426|consen 379 TYDTSDLAALKYRLNEEKADWIIYVVDSGQSQHFNT-------------------------------------------- 414 (656)
T ss_pred ccccchHHHHHHHHHHhhcCeEEEEeeCchhHHHHH--------------------------------------------
Confidence 999999999999999999999999999999999986
Q ss_pred hcCCCCCCCCchhhHHHHHHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccccc
Q psy6783 606 KFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 685 (1119)
Q Consensus 606 ~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~g 685 (1119)
T Consensus 415 -------------------------------------------------------------------------------- 414 (656)
T KOG4426|consen 415 -------------------------------------------------------------------------------- 414 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhHHHHHHHHHhcCCeeeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccc
Q psy6783 686 ESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTR 765 (1119)
Q Consensus 686 ES~y~~~~~~vi~~l~~~g~~~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str 765 (1119)
+++++++.||++|...|+.|++||+|+|+|+++|+||
T Consensus 415 -------------------------------------------~fkAar~~gwld~~~~RV~HvgFGlVLGeD~KkFkTR 451 (656)
T KOG4426|consen 415 -------------------------------------------IFKAARKAGWLDPTYPRVEHVGFGLVLGEDKKKFKTR 451 (656)
T ss_pred -------------------------------------------HHHHHHHcCccCCCccceeeeeeeeEEccCccccccc
Confidence 5677888999999889999999999999999999999
Q ss_pred cCCeeeHHHHHHHHHHHHHHHHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhH
Q psy6783 766 SGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLL 845 (1119)
Q Consensus 766 ~G~~v~l~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~ 845 (1119)
.|.+|.|.|||+|+..|+++.+.+++|++
T Consensus 452 sgetVrL~DLLdEg~kRs~~~Liergrdk--------------------------------------------------- 480 (656)
T KOG4426|consen 452 SGETVRLLDLLDEGKKRSKEKLIERGRDK--------------------------------------------------- 480 (656)
T ss_pred ccceeeHHHHHHHHHHHHHHHHHHhcccc---------------------------------------------------
Confidence 99999999999999999988888776543
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCcccccccCCCCCcCCCCCCCchhHHHHHHhhhccccccccccccCccchhhhh
Q psy6783 846 YAYTRIASIARTAGINSEDPPEPDPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLCWVWRGVGRGQEEVQDSL 925 (1119)
Q Consensus 846 y~~~rl~si~rk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1119)
T Consensus 481 -------------------------------------------------------------------------------- 480 (656)
T KOG4426|consen 481 -------------------------------------------------------------------------------- 480 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcchhhhhhHHhhhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHH
Q psy6783 926 RGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIA 1005 (1119)
Q Consensus 926 ~~~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIl 1005 (1119)
.|+++|+.+++++||.|||||+||+++|.++|+|++|+||+..|||++||.|||+|||||.
T Consensus 481 -------------------~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~ 541 (656)
T KOG4426|consen 481 -------------------VLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIA 541 (656)
T ss_pred -------------------cCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHHHHHH
Confidence 4567778888899999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcchhhh-hccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccccccCCcc
Q psy6783 1006 RTAGINSEDLRV-AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEG 1084 (1119)
Q Consensus 1006 rKa~~~~~~l~~-~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~VL~~~~~~ 1084 (1119)
||+|.+...+.. ....+...|.|+.||.|.++|++|+|+|+.+..++-||.||+|+|+||..|+.||++|.|++.++++
T Consensus 542 rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~FY~~Cyv~e~~~eg 621 (656)
T KOG4426|consen 542 RKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTEFYDSCYVIEKNKEG 621 (656)
T ss_pred HHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccEEecccccc
Confidence 999987544432 2234567899999999999999999999999999999999999999999999999999999888778
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHhhhcCCCcCcCC
Q psy6783 1085 KIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119 (1119)
Q Consensus 1085 ~~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~erM 1119 (1119)
+.+.+..+||+||+||+.|++.|+.+|||.|+.+|
T Consensus 622 ~i~~vn~sRllLCeata~VmrkcF~iLGi~pV~km 656 (656)
T KOG4426|consen 622 EIPFVNMSRLLLCEATAAVMRKCFHILGIKPVYKM 656 (656)
T ss_pred ccccchhHHHHHHHHHHHHHHHhhHhhCCcccccC
Confidence 88889999999999999999999999999999998
No 2
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-124 Score=1114.97 Aligned_cols=565 Identities=35% Similarity=0.550 Sum_probs=500.7
Q ss_pred ccHHHHHHHHHHHHHHHhcCcCCCCcceEeecCcccccCCccchhchHHHHHHHhhccCCCCCHHHHHHHHHHhhccccc
Q psy6783 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELA 284 (1119)
Q Consensus 205 m~i~~~l~~~i~~al~~~~~~~~~~~~~ve~p~~~~~~~~GD~atn~Am~lAK~~k~~~~~~~P~~IA~~i~~~l~~~l~ 284 (1119)
|+|++.+++.|.+++.++........+.|+.|+++ +|||||||+||.|||.++ +||++||++|++. |.
T Consensus 1 m~i~~~l~~~i~~~l~~~~~~~~~~~~~ve~~~~~---~~GD~a~n~a~~laK~~~-----~~P~eiA~~i~~~----l~ 68 (577)
T COG0018 1 MNIKQLLKEKIAEALSAAGLDVEEIEILVEPPKDP---EHGDFATNIAFQLAKKLG-----KNPREIAEEIAEK----LD 68 (577)
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccceecCCCC---CcccccchHHHHHhhhcC-----CCHHHHHHHHHHh----cc
Confidence 68889999999999998861223346789999999 999999999999999996 9999999999999 76
Q ss_pred CCcccccceeeEEEeCCeEEEEEeCHHHHHHHHHHHHHcCC-CCC--CCCCCcEEEEEeeCCCCCCCccccccchhcHHH
Q psy6783 285 TNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV-QPP--TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGD 361 (1119)
Q Consensus 285 ~~~~~~~~ie~vevagpGFINf~L~~~~~~~~l~~il~~g~-~~~--~~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGD 361 (1119)
.+ +.|++|+++|||||||+|++.++.+.+.+++..+. .++ ..+++++|+||||||||||||||||+|||||||
T Consensus 69 ~~----~~~~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGD 144 (577)
T COG0018 69 TD----EIIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGD 144 (577)
T ss_pred cc----CcEeEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHH
Confidence 55 57999999999999999999999999999888744 453 356789999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCC-CCCCChHHHHHHHHHhcccCCCcHHHH-HHHHHHHHHH
Q psy6783 362 TISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFK-KRAYQCVVAL 439 (1119)
Q Consensus 362 sLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~-~~~~~i~~l~~~y~~~~~~~~~de~~~-~~a~~~~~~l 439 (1119)
+|||||+|+||+|+|+|||||||+|||+|+.+++.++.+.. ...+++.++.++|++.++.+++++... .++++.+.++
T Consensus 145 sLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~ 224 (577)
T COG0018 145 SLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKL 224 (577)
T ss_pred HHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 99999999999999999999999999999999988877654 245678899999999998887766432 7889999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec---cchhhhhHHHHHHHHHHHHCCCeEeeCCCeEEEcCC----CC
Q psy6783 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGED----RG 512 (1119)
Q Consensus 440 e~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~---~geS~y~~~v~~vi~~L~~kG~~~e~dGA~~~~~dd----kd 512 (1119)
|.+|+++ ++|++++++++++++++|++|||+||. +|||+|+++++++++.|+++|++|++|||++++.+. -|
T Consensus 225 e~~d~~~-~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd 303 (577)
T COG0018 225 ESGDEEA-ELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGD 303 (577)
T ss_pred hcCChHH-HHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCC
Confidence 9999999 999999999999999999999999875 489999999999999999999999999999877643 23
Q ss_pred CCCeEEEecCCCcccchhhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcc
Q psy6783 513 SIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDW 592 (1119)
Q Consensus 513 ~~~~VL~KSDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDw 592 (1119)
.+|+||+|||||+||+|+|||||+||++ ++||++|||||++|..|+.+
T Consensus 304 ~~~~vl~KSDGt~lY~t~DIAy~~~K~~-~~~d~~IyV~gadq~~~~~q------------------------------- 351 (577)
T COG0018 304 DKDRVLQKSDGTYLYFTRDIAYHLYKFE-RGFDKLIYVLGADQHGHFKQ------------------------------- 351 (577)
T ss_pred CCCeEEEEcCCCeeeehhHHHHHHHHHh-cCCCEEEEEeCCcchhHHHH-------------------------------
Confidence 4689999999999999999999999997 89999999999999998887
Q ss_pred hhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHH
Q psy6783 593 GTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQK 672 (1119)
Q Consensus 593 G~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~ 672 (1119)
T Consensus 352 -------------------------------------------------------------------------------- 351 (577)
T COG0018 352 -------------------------------------------------------------------------------- 351 (577)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcccccccccchhhhhHHHHHHHHHhcCCeeeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeee
Q psy6783 673 IYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFG 752 (1119)
Q Consensus 673 ~Y~rL~V~Fd~~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg 752 (1119)
++++++.+|+..+ +..+.|.+||
T Consensus 352 --------------------------------------------------------l~~~l~~~g~~~~-~~~~~h~~~~ 374 (577)
T COG0018 352 --------------------------------------------------------LKAVLELLGYGPD-KEVLLHQGVG 374 (577)
T ss_pred --------------------------------------------------------HHHHHHHhcCCCc-cceEEEEEEe
Confidence 4556666777443 3679999999
Q ss_pred EEECCCCcccccccCCeeeHHHHHHHHHHHHHHHHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccc
Q psy6783 753 VVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDK 832 (1119)
Q Consensus 753 ~V~~~~~~~~str~G~~v~l~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~ 832 (1119)
+|.+.++.+||||+|++|+|+|+|+++.+|+.+.++++ ..
T Consensus 375 l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~-~~--------------------------------------- 414 (577)
T COG0018 375 LVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEK-EE--------------------------------------- 414 (577)
T ss_pred eeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhh-hh---------------------------------------
Confidence 99999999999999999999999999998876665432 10
Q ss_pred cccccCCchhhhHHHHHHHHHHHHhhCCCCCCCCCCCCCCcccccccCCCCCcCCCCCCCchhHHHHHHhhhcccccccc
Q psy6783 833 MLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLCWVWR 912 (1119)
Q Consensus 833 ~~~~~g~t~~yl~y~~~rl~si~rk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 912 (1119)
T Consensus 415 -------------------------------------------------------------------------------- 414 (577)
T COG0018 415 -------------------------------------------------------------------------------- 414 (577)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccchhhhhhcchhhhhhHHhhhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchh
Q psy6783 913 GVGRGQEEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAV 992 (1119)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~ 992 (1119)
.+ +++|+.||++||+|+||+++|+++|+|||++|++|+|||+|
T Consensus 415 ------------------------------------~~-~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~p 457 (577)
T COG0018 415 ------------------------------------KN-EEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAP 457 (577)
T ss_pred ------------------------------------hh-HHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCch
Confidence 01 56889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhh
Q psy6783 993 YLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFY 1072 (1119)
Q Consensus 993 YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY 1072 (1119)
|||||||||||||||++....... ...+ ..++++.|++|++.|++||++|++|++.++||+||.||++||+.||+||
T Consensus 458 YvQYA~ARi~SIlrka~e~~~~~~--~~~~-~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY 534 (577)
T COG0018 458 YVQYAHARICSILRKAGEDELDLS--TEAD-ALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFY 534 (577)
T ss_pred hHHHHHHHHHHHHHhccccccccc--cccc-hhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999986522210 1112 4678889999999999999999999999999999999999999999999
Q ss_pred hcccccccCCccchhhhHhHHHHHHHHHHHHHHHHhhhcCCCcCcCC
Q psy6783 1073 DNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119 (1119)
Q Consensus 1073 ~~~~VL~~~~~~~~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~erM 1119 (1119)
+.|||++.+++ +++.+||+||.+|++||+|||.||||++||||
T Consensus 535 ~~~~Vl~~~~~----~~~~aRL~L~~a~~~vL~ngL~LLGI~~~e~M 577 (577)
T COG0018 535 NACPVLGAENE----ELRAARLALVKATRQVLKNGLDLLGIEAPERM 577 (577)
T ss_pred hhCCcCCCCcH----HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCC
Confidence 99999986542 37899999999999999999999999999999
No 3
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=3.5e-122 Score=1112.06 Aligned_cols=570 Identities=50% Similarity=0.846 Sum_probs=501.0
Q ss_pred HHHHHHHHHHHhcCcCCCCcceEeecCcccccCCccchhchHHHHHHHhhccCCC-CCHHHHHHHHHHhhcccccCCccc
Q psy6783 211 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASVVTSELATNPSL 289 (1119)
Q Consensus 211 l~~~i~~al~~~~~~~~~~~~~ve~p~~~~~~~~GD~atn~Am~lAK~~k~~~~~-~~P~~IA~~i~~~l~~~l~~~~~~ 289 (1119)
|...+.++|.++++......+.|+.|+++ +|||||||+||.|||.++..+.+ ++|++||++|++. |...
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~i~~~~~~---~~GD~a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~----l~~~--- 72 (576)
T PLN02286 3 LAKLFEASLRLTVPDEPSVEPLVAACTNP---KFGDYQCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKN----LPAS--- 72 (576)
T ss_pred HHHHHHHHHHHhcCcccccCeEEecCCCC---CCCCcccchHHHHHHHhCccccccCCHHHHHHHHHHh----Cccc---
Confidence 45556666766654322234678999988 99999999999999998522222 8999999999999 6543
Q ss_pred ccceeeEEEeCCeEEEEEeCHHHHHHHHHHHHHcCCCCC-CCCCCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHH
Q psy6783 290 AKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPP-TLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLE 368 (1119)
Q Consensus 290 ~~~ie~vevagpGFINf~L~~~~~~~~l~~il~~g~~~~-~~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~ 368 (1119)
++|++|+++|||||||+|++.++.+.+.+++..+..++ ...++++|+||||||||||||||||+|||||||+|||||+
T Consensus 73 -~~i~~v~vagpGfiNf~l~~~~l~~~l~~~~~~~~~~g~~~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~ 151 (576)
T PLN02286 73 -EMIESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLE 151 (576)
T ss_pred -cceeeEEEcCCCeEEEEECHHHHHHHHHHHHHcCcccCCCCCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHH
Confidence 57999999999999999999999999999988877654 2335689999999999999999999999999999999999
Q ss_pred HcCCcEEEecccCCchhHHHHHHHHHHhhcCCCC-CCCCChHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHH
Q psy6783 369 YLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447 (1119)
Q Consensus 369 ~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~-~~~~~i~~l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~ 447 (1119)
++||+|+|+|||||||+|||+|+.+++.++|+.. .++.++.++..+|+++++.++++++|++++++.+.+||+||+++.
T Consensus 152 ~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~ 231 (576)
T PLN02286 152 FSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYR 231 (576)
T ss_pred HcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999977787643 455688999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcEEeccchhhhhHHHHHHHHHHHHCCCeEeeCCCeEEEcCCCCCCCeEEEecCCCccc
Q psy6783 448 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTY 527 (1119)
Q Consensus 448 ~lW~~~~~~s~~~~~~~y~~l~i~f~~~geS~y~~~v~~vi~~L~~kG~~~e~dGA~~~~~ddkd~~~~VL~KSDGt~tY 527 (1119)
++|++++++++++|+++|.+|||+|+..|||+|++.++++++.|+++|+++++|||+|+++++.+ .|+||+|||||+||
T Consensus 232 ~lw~~~~~~~~~~~~~~y~~l~V~fd~~ges~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~~-~~~vl~ksDGt~tY 310 (576)
T PLN02286 232 AAWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFD-IPLIVVKSDGGFNY 310 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeeeecCchhhhhhHHHHHHHHHHCCCEEeeCCceEeeccCCC-CceEEEECCCchhh
Confidence 99999999999999999999999999889999998899999999999999999999999987765 58999999999999
Q ss_pred chhhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhc
Q psy6783 528 DTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF 607 (1119)
Q Consensus 528 ~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~ 607 (1119)
+|+|||||+||+++++||++|||||++|..||.+
T Consensus 311 ~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~---------------------------------------------- 344 (576)
T PLN02286 311 ASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDM---------------------------------------------- 344 (576)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHH----------------------------------------------
Confidence 9999999999999889999999999999999987
Q ss_pred CCCCCCCCchhhHHHHHHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccccccc
Q psy6783 608 PDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES 687 (1119)
Q Consensus 608 ~~~~~~~~~i~~L~~~Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~gES 687 (1119)
T Consensus 345 -------------------------------------------------------------------------------- 344 (576)
T PLN02286 345 -------------------------------------------------------------------------------- 344 (576)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHHHHhcCCeeeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCC-CCCceeeeeeEEECCCCccccccc
Q psy6783 688 FYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPN-KTRMDFVGFGVVLGEDRKKFKTRS 766 (1119)
Q Consensus 688 ~y~~~~~~vi~~l~~~g~~~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~-~~~~~h~~fg~V~~~~~~~~str~ 766 (1119)
|+++++.+|+.++. ..+++|+.||+|++.+|++||||+
T Consensus 345 -----------------------------------------v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~ 383 (576)
T PLN02286 345 -----------------------------------------VFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRS 383 (576)
T ss_pred -----------------------------------------HHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCC
Confidence 56667777874221 358999999999888888999999
Q ss_pred CCeeeHHHHHHHHHHHHHHHHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHH
Q psy6783 767 GDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLY 846 (1119)
Q Consensus 767 G~~v~l~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y 846 (1119)
|++|+|+|+|+++..+|.+.+.+++.
T Consensus 384 G~~v~L~dlldea~~~a~~~~~~~~~------------------------------------------------------ 409 (576)
T PLN02286 384 GEVVRLVDLLDEAKSRSKAALIERGK------------------------------------------------------ 409 (576)
T ss_pred CCeeEHHHHHHHHHHHHHHHHHhccC------------------------------------------------------
Confidence 99999999999999988777754321
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCcccccccCCCCCcCCCCCCCchhHHHHHHhhhccccccccccccCccchhhhhh
Q psy6783 847 AYTRIASIARTAGINSEDPPEPDPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLCWVWRGVGRGQEEVQDSLR 926 (1119)
Q Consensus 847 ~~~rl~si~rk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1119)
T Consensus 410 -------------------------------------------------------------------------------- 409 (576)
T PLN02286 410 -------------------------------------------------------------------------------- 409 (576)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhhHHhhhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHH
Q psy6783 927 GYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIAR 1006 (1119)
Q Consensus 927 ~~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlr 1006 (1119)
...+++++.+++++.||++||+|+||+++++++|+|||++|++++|||+|||||||||||||||
T Consensus 410 ----------------~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlr 473 (576)
T PLN02286 410 ----------------DSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIR 473 (576)
T ss_pred ----------------ccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHH
Confidence 0123445667889999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccccccCCccch
Q psy6783 1007 TAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKI 1086 (1119)
Q Consensus 1007 Ka~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~VL~~~~~~~~ 1086 (1119)
|++.....+ ...+...|++|.|+.|++.|++||++|+.|+++++||+||+||++||++||+||+.|||++.++
T Consensus 474 Ka~~~~~~~---~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl~~~~---- 546 (576)
T PLN02286 474 KSGKDIDEL---KKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCKVNGSEE---- 546 (576)
T ss_pred hccCccccc---cccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCccCCCCc----
Confidence 997431111 0112335789999999999999999999999999999999999999999999999999997432
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhhhcCCCcCcCC
Q psy6783 1087 KTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119 (1119)
Q Consensus 1087 ~~~~~aRL~L~~at~~VL~~gL~LLGI~~~erM 1119 (1119)
+ .+||+||.||++||++||.||||+|||||
T Consensus 547 -~--~aRL~L~~a~~~vL~~gL~LLGI~~~e~M 576 (576)
T PLN02286 547 -E--TSRLLLCEATAIVMRKCFHLLGITPLYRL 576 (576)
T ss_pred -h--hHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 1 79999999999999999999999999999
No 4
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-114 Score=1046.03 Aligned_cols=556 Identities=29% Similarity=0.487 Sum_probs=485.9
Q ss_pred cHHHHHHHHHHHHHHHhcCcCCCCcceEeecCcccccCCccchhchHHHHHHHhhccCCCCCHHHHHHHHHHhhcccccC
Q psy6783 206 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELAT 285 (1119)
Q Consensus 206 ~i~~~l~~~i~~al~~~~~~~~~~~~~ve~p~~~~~~~~GD~atn~Am~lAK~~k~~~~~~~P~~IA~~i~~~l~~~l~~ 285 (1119)
++++.|.+.|.+++...... ....+.|+.|+++ +||||||| +|.|||.++ ++|++||++|++. |..
T Consensus 2 ~~~~~i~~~l~~~l~~~~~~-~~~~~~i~~~~~~---~~GD~~~~-~~~lak~~~-----~~P~~iA~~i~~~----l~~ 67 (562)
T PRK12451 2 DYKTQFAESLSNIFTNELTQ-QQILDLIETPKQD---EFGDAAFP-CFSLAKQYK-----KAPAIIAKEVAEK----LSD 67 (562)
T ss_pred hHHHHHHHHHHHHHHhhccc-cccceeeecCCCC---CCCcccch-HHHHHHHcC-----CCHHHHHHHHHHh----ccc
Confidence 45667777777777654321 1123568888888 99999999 699999986 9999999999999 532
Q ss_pred CcccccceeeEEEeCCeEEEEEeCHHHHHHH-HHHHHHcCCCCCCC--CCCcEEEEEeeCCCCCCCccccccchhcHHHH
Q psy6783 286 NPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ-IKDIIVNGVQPPTL--NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362 (1119)
Q Consensus 286 ~~~~~~~ie~vevagpGFINf~L~~~~~~~~-l~~il~~g~~~~~~--~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDs 362 (1119)
+.|++||++|| ||||+|++.++... +.+++..+..|+.. +++++|+||||||||||||||||+|||||||+
T Consensus 68 -----~~i~~ve~~g~-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~ 141 (562)
T PRK12451 68 -----PFFTKVEAVGP-YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNA 141 (562)
T ss_pred -----cccceeEeeCC-EEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEEEEecCCCCCCCcccchhhhHHHHHH
Confidence 34899999996 99999999988666 56887777777632 45789999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCC-CCCCCChHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHhc
Q psy6783 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR 441 (1119)
Q Consensus 363 Laril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~-~~~~~~i~~l~~~y~~~~~~~~~de~~~~~a~~~~~~le~ 441 (1119)
|||||+++||+|+|+|||||||+|||+|+.++.. +++. ..+..++.++..+|+++++.+++++++++++++.+.+||+
T Consensus 142 l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~-~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~ 220 (562)
T PRK12451 142 LKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKK-WGNEAVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEE 220 (562)
T ss_pred HHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHH-hCCccccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999854 4332 2345678999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec-cchhhhhHHHHHHHHHHHHCCCeEeeCCCeEEEcCCCCCCCeEEEe
Q psy6783 442 FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVK 520 (1119)
Q Consensus 442 gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~-~geS~y~~~v~~vi~~L~~kG~~~e~dGA~~~~~ddkd~~~~VL~K 520 (1119)
||++..++|+.++++++++++++|.+|||+||+ .|||+|.+.+++++++|+++|+++++|||+|++.++.+.+|+||+|
T Consensus 221 gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~~~~g~~~~vl~k 300 (562)
T PRK12451 221 GDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRK 300 (562)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecchHhhhhhHHHHHHHHHHCCCEEecCCeEEEEecccCCCceEEEe
Confidence 999999999999999999999999999999986 4899999889999999999999999999999887654436899999
Q ss_pred cCCCcccchhhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHH
Q psy6783 521 SDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLI 600 (1119)
Q Consensus 521 SDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~ 600 (1119)
||||+||+|+|||||.||+++++||++|||||++|..||.+
T Consensus 301 sDGt~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~--------------------------------------- 341 (562)
T PRK12451 301 SDGATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQ--------------------------------------- 341 (562)
T ss_pred CCCccccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHH---------------------------------------
Confidence 99999999999999999999999999999999999999987
Q ss_pred HHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccc
Q psy6783 601 AHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT 680 (1119)
Q Consensus 601 ~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~ 680 (1119)
T Consensus 342 -------------------------------------------------------------------------------- 341 (562)
T PRK12451 342 -------------------------------------------------------------------------------- 341 (562)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccchhhhhHHHHHHHHHhcCCeeeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCc
Q psy6783 681 LTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 760 (1119)
Q Consensus 681 Fd~~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~ 760 (1119)
|+++++.+|+.. ..+++|+.||+|+. +|+
T Consensus 342 ------------------------------------------------l~~~~~~lg~~~--~~~l~h~~~g~V~~-~g~ 370 (562)
T PRK12451 342 ------------------------------------------------FFTVLKKLGYTW--VDGMEHVPFGLILK-DGK 370 (562)
T ss_pred ------------------------------------------------HHHHHHHcCCCc--ccCeEEEeeeeEec-CCC
Confidence 566677788742 35899999999987 567
Q ss_pred ccccccCCeeeHHHHHHHHHHHHHHHHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCc
Q psy6783 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 840 (1119)
Q Consensus 761 ~~str~G~~v~l~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t 840 (1119)
+||||+|++|+|+|||+++..++.+.+.+++..
T Consensus 371 kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~----------------------------------------------- 403 (562)
T PRK12451 371 KMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPN----------------------------------------------- 403 (562)
T ss_pred CCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccc-----------------------------------------------
Confidence 999999999999999999999887776543210
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCCCCCCCCCCCcccccccCCCCCcCCCCCCCchhHHHHHHhhhccccccccccccCccc
Q psy6783 841 AVYLLYAYTRIASIARTAGINSEDPPEPDPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLCWVWRGVGRGQEE 920 (1119)
Q Consensus 841 ~~yl~y~~~rl~si~rk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 920 (1119)
T Consensus 404 -------------------------------------------------------------------------------- 403 (562)
T PRK12451 404 -------------------------------------------------------------------------------- 403 (562)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcchhhhhhHHhhhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHHHHH
Q psy6783 921 VQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000 (1119)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahAR 1000 (1119)
+ ++.+.+++.||+|||+|+||+++++++|+||||+|++++|||+|||||||||
T Consensus 404 -------------------------l--~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR 456 (562)
T PRK12451 404 -------------------------L--KQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHAR 456 (562)
T ss_pred -------------------------c--ccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHH
Confidence 0 1123467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhccccccc
Q psy6783 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEK 1080 (1119)
Q Consensus 1001 i~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~VL~~ 1080 (1119)
|||||||++.... ..+ ..|++|.|++|+..|..||+++..++++++||++|+|+++||..||+||+.|+|+.+
T Consensus 457 ~~SIlrka~~~~~------~~~-~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~Vl~~ 529 (562)
T PRK12451 457 ACSILRKESVEFE------TCT-FALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVRILEE 529 (562)
T ss_pred HHHHHHhcCCCcc------ccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999964211 112 236799999999999999999999999999999999999999999999999999942
Q ss_pred CCccchhhhHhHHHHHHHHHHHHHHHHhhhcCCCcCcCC
Q psy6783 1081 DAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119 (1119)
Q Consensus 1081 ~~~~~~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~erM 1119 (1119)
+ +.+.+||+||.||++||++||.||||+|||||
T Consensus 530 ~------~~~~~RL~L~~a~~~vL~~gL~LLGI~~~erM 562 (562)
T PRK12451 530 S------AEKDSRLALVYAVTVVLKEGLRLLGVEAPEEM 562 (562)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 2 36899999999999999999999999999999
No 5
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=1.3e-104 Score=961.72 Aligned_cols=556 Identities=34% Similarity=0.513 Sum_probs=479.8
Q ss_pred HHHHHHHHHHHHHHhcCcCCCCcceEeecCcccccCCccchhchHHHHHHHhhccCCCCCHHHHHHHHHHhhcccccCCc
Q psy6783 208 RDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNP 287 (1119)
Q Consensus 208 ~~~l~~~i~~al~~~~~~~~~~~~~ve~p~~~~~~~~GD~atn~Am~lAK~~k~~~~~~~P~~IA~~i~~~l~~~l~~~~ 287 (1119)
.+.|++.|.+++..+... ..+.+.++.|+++ .|||||||+||.+||.++ ++|++||++|++. |...
T Consensus 2 ~~~i~~~~~~~l~~~~~~-~~~~~~i~~~~~~---~~GD~~~~~a~~lak~~~-----~~P~~iA~~i~~~----l~~~- 67 (566)
T TIGR00456 2 KTLLKDEISAALLKAGLS-KESEILLEETPNP---EFGDYASNIAFPLAKVLK-----KNPRAIAEEIVLK----LKTG- 67 (566)
T ss_pred hHHHHHHHHHHHHhcccc-cccceeeecCCCC---CCCccccHHHHHHHHHcC-----CCHHHHHHHHHHh----CCCc-
Confidence 355667777777655211 1123678888888 999999999999999986 9999999999999 6443
Q ss_pred ccccceeeEEEeCCeEEEEEeCHHHHHHH-HHHHHHcCCCCCCC-CCCcEEEEEeeCCCCCCCccccccchhcHHHHHHH
Q psy6783 288 SLAKVIDKIEVAKPGFVNVFLSRVYAGEQ-IKDIIVNGVQPPTL-NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISR 365 (1119)
Q Consensus 288 ~~~~~ie~vevagpGFINf~L~~~~~~~~-l~~il~~g~~~~~~-~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLar 365 (1119)
+.|++|+++|| ||||+|++.++.+. +..++..+..|+.. ..+++|+||||||||||||||||+||+++||+|+|
T Consensus 68 ---~~i~~ve~~gp-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r 143 (566)
T TIGR00456 68 ---EIIEKVEAAGP-FINFFLSPQKLLERLIQKILTQKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLAR 143 (566)
T ss_pred ---CcEeEEEEeCC-EEEEEEcHHHHHHHHHHHHHhcccccCCCCCCCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHH
Confidence 67999999999 99999999766655 67888887777632 12679999999999999999999999999999999
Q ss_pred HHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCC--CCCCChHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCC
Q psy6783 366 LLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL--TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFD 443 (1119)
Q Consensus 366 il~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~--~~~~~i~~l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd 443 (1119)
+|+++||+|.|+|||||||+|||+|+.+++.++++.. ....++.++..+|++.++.++++++|.+++++.+.+||.||
T Consensus 144 ~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d 223 (566)
T TIGR00456 144 ILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGD 223 (566)
T ss_pred HHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999976655432 23457788888999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCcEEec---cchhhhhHHHHHHHHHHHHCCCeEeeCCCeEEEcCCC-CC-CCeEE
Q psy6783 444 PDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDR-GS-IPMTI 518 (1119)
Q Consensus 444 ~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~---~geS~y~~~v~~vi~~L~~kG~~~e~dGA~~~~~ddk-d~-~~~VL 518 (1119)
+++..+|+.++++++++++++|.+|||+||. ++|++|.+.++++++.|+++|+++++ ||+|++.++. |. +|+||
T Consensus 224 ~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~~~d~~~~~vl 302 (566)
T TIGR00456 224 EEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTLFGDKDKDRVL 302 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEcccccCCCCCeEE
Confidence 9999999999999999999999999999984 37889999999999999999999977 9999876543 22 47999
Q ss_pred EecCCCcccchhhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHH
Q psy6783 519 VKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 598 (1119)
Q Consensus 519 ~KSDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~ 598 (1119)
+|||||+||+|+|||||++|+++ +||++|||||++|..||.+
T Consensus 303 ~ksDGt~~Y~t~DiA~~~~k~~~-~~d~iI~V~g~~q~~h~~~------------------------------------- 344 (566)
T TIGR00456 303 QKSDGTYLYLTRDIAYHLDKLER-GFDKMIYVWGSDHHLHIAQ------------------------------------- 344 (566)
T ss_pred EECCCCceechhhHHHHHHHHhc-CCCEEEEEecCcHHHHHHH-------------------------------------
Confidence 99999999999999999999987 9999999999999998887
Q ss_pred HHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhc
Q psy6783 599 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLN 678 (1119)
Q Consensus 599 l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~ 678 (1119)
T Consensus 345 -------------------------------------------------------------------------------- 344 (566)
T TIGR00456 345 -------------------------------------------------------------------------------- 344 (566)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccchhhhhHHHHHHHHHhcCCeeeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCC
Q psy6783 679 VTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGED 758 (1119)
Q Consensus 679 V~Fd~~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~ 758 (1119)
|+++++.+|+..| .++.|++||+|.+
T Consensus 345 --------------------------------------------------v~~~l~~lG~~~~--~~l~h~~~~~V~~-- 370 (566)
T TIGR00456 345 --------------------------------------------------FFAILEKLGFYKK--KELIHLNFGMVPL-- 370 (566)
T ss_pred --------------------------------------------------HHHHHHHcCCCCC--CceEEEEEEEEEC--
Confidence 5667777887433 5899999999986
Q ss_pred CcccccccCCeeeHHHHHHHHHHHHHHHHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccC
Q psy6783 759 RKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 838 (1119)
Q Consensus 759 ~~~~str~G~~v~l~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g 838 (1119)
.+||||+|++|.+.++|+++..|+.+.+..++.
T Consensus 371 -~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~---------------------------------------------- 403 (566)
T TIGR00456 371 -GSMKTRRGNVISLDNLLDEASKRAGNVITIKND---------------------------------------------- 403 (566)
T ss_pred -CCCCccCCceeeHHHHHHHHHHHHHHHHHhcCC----------------------------------------------
Confidence 479999999999999999998887666543211
Q ss_pred CchhhhHHHHHHHHHHHHhhCCCCCCCCCCCCCCcccccccCCCCCcCCCCCCCchhHHHHHHhhhccccccccccccCc
Q psy6783 839 NTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLCWVWRGVGRGQ 918 (1119)
Q Consensus 839 ~t~~yl~y~~~rl~si~rk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 918 (1119)
T Consensus 404 -------------------------------------------------------------------------------- 403 (566)
T TIGR00456 404 -------------------------------------------------------------------------------- 403 (566)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhhcchhhhhhHHhhhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHHH
Q psy6783 919 EEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAY 998 (1119)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYah 998 (1119)
++.+++++.+|++|++|++|++++.++++|||+++++++|||+|||||+|
T Consensus 404 ------------------------------~~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~ 453 (566)
T TIGR00456 404 ------------------------------LEEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAH 453 (566)
T ss_pred ------------------------------ccHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHH
Confidence 02345678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhccccc
Q psy6783 999 TRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCI 1078 (1119)
Q Consensus 999 ARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~VL 1078 (1119)
||||||+||++..... . ... ...+.++.|+.|+..|.+||+++..++++++||.+|.|+++||..||+||+.|||+
T Consensus 454 aR~~SIlrK~~~~~~~--~-~~~-~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~~Vl 529 (566)
T TIGR00456 454 ARICSILRKADIDGEK--L-IAD-DFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVL 529 (566)
T ss_pred HHHHHHHHhccccccc--c-ccc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCccC
Confidence 9999999999643211 0 011 12345889999999999999999999999999999999999999999999999999
Q ss_pred ccCCccchhhhHhHHHHHHHHHHHHHHHHhhhcCCCcCcCC
Q psy6783 1079 EKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119 (1119)
Q Consensus 1079 ~~~~~~~~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~erM 1119 (1119)
++++ ++++.+||+||.||++||++||.||||+|||||
T Consensus 530 ~~~~----~~~~~~RL~L~~a~~~vl~~gL~lLGI~~~e~M 566 (566)
T TIGR00456 530 DAEN----ENLAAARLALLKATRQTLKNGLQLLGIEPPERM 566 (566)
T ss_pred CCCC----HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 7543 257899999999999999999999999999999
No 6
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.9e-94 Score=861.18 Aligned_cols=498 Identities=33% Similarity=0.523 Sum_probs=425.3
Q ss_pred ccHHHHHHHHHHHHHHHhcCcCCCCcceEeecCcccccCCccchhchHHHHHHHhhccCCCCCHHHHHHHHHHhhccccc
Q psy6783 205 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELA 284 (1119)
Q Consensus 205 m~i~~~l~~~i~~al~~~~~~~~~~~~~ve~p~~~~~~~~GD~atn~Am~lAK~~k~~~~~~~P~~IA~~i~~~l~~~l~ 284 (1119)
|++++.|.+.+.+++...... ....+.|+.|+++ ++|||+||+||.+||.++ ++|++||++|++.
T Consensus 3 ~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~---~~gd~~~~~a~~lak~~~-----~~p~~ia~~i~~~------ 67 (507)
T PRK01611 3 MDIKELLAEALAAALEAGGLP-ELPAVLIERPKDP---EHGDYATNVAMQLAKKLK-----KNPREIAEEIVEA------ 67 (507)
T ss_pred HHHHHHHHHHHHHHHHhcccc-ccccceeecCCCC---CccCeecHHHHHHHHHcC-----CCHHHHHHHHHhh------
Confidence 467777888877777654211 1113458888888 999999999999999986 8999999999875
Q ss_pred CCcccccceeeEEEeCCeEEEEEeCHHHHHHHHHHHHHcCCCCCC--CCCCcEEEEEeeCCCCCCCccccccchhcHHHH
Q psy6783 285 TNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT--LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDT 362 (1119)
Q Consensus 285 ~~~~~~~~ie~vevagpGFINf~L~~~~~~~~l~~il~~g~~~~~--~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDs 362 (1119)
|++|+++|||||||+|++.++.+.+.+++..+..|+. .+++++|+||||||||+|||||||+|++++||+
T Consensus 68 --------i~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~ 139 (507)
T PRK01611 68 --------IEKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDA 139 (507)
T ss_pred --------eeEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHH
Confidence 6899999999999999999999999888877777763 357789999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHhcC
Q psy6783 363 ISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 442 (1119)
Q Consensus 363 Laril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~y~~~~~~~~~de~~~~~a~~~~~~le~g 442 (1119)
|+|+|+++||+|+++||+||||+||++++.++..
T Consensus 140 laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~---------------------------------------------- 173 (507)
T PRK01611 140 LARILEFAGYDVTREYYVNDAGTQIGMLIASLEL---------------------------------------------- 173 (507)
T ss_pred HHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999998876421
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec---cchhhhhHHHHHHHHHHHHCCCeE-eeCCCeEEEcCCC-CCCCeE
Q psy6783 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLE-LDDGRKIMWGEDR-GSIPMT 517 (1119)
Q Consensus 443 d~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~---~geS~y~~~v~~vi~~L~~kG~~~-e~dGA~~~~~ddk-d~~~~V 517 (1119)
.|+.+++.+.+.|.++|.+|||+|+. .+++.+.+.++++++.|+++|++| ++||++|+..+.. |..|+|
T Consensus 174 ------~~~~~~~~~~~~~~~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~v 247 (507)
T PRK01611 174 ------LWRKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRV 247 (507)
T ss_pred ------HHHHHHHHHHHHHHHHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeE
Confidence 68999999999999999999999973 234466689999999999999999 9999998765543 224799
Q ss_pred EEecCCCcccchhhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHH
Q psy6783 518 IVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 597 (1119)
Q Consensus 518 L~KSDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG 597 (1119)
|+|||||+||+|+|||||.+|+++ ||++|||||++|+.||.+
T Consensus 248 l~ksdG~~~Y~t~Dia~~~~k~~~--~d~~i~V~g~~q~~hf~~------------------------------------ 289 (507)
T PRK01611 248 LIKSDGTYTYFTRDIAYHLYKFER--FDRVIYVVGADHHGHFKR------------------------------------ 289 (507)
T ss_pred EEECCCCccchHHHHHHHHHHHhh--cCEEEEEECCChHHHHHH------------------------------------
Confidence 999999999999999999999976 999999999999999988
Q ss_pred HHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHh
Q psy6783 598 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677 (1119)
Q Consensus 598 ~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL 677 (1119)
T Consensus 290 -------------------------------------------------------------------------------- 289 (507)
T PRK01611 290 -------------------------------------------------------------------------------- 289 (507)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccchhhhhHHHHHHHHHhcCCeeeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECC
Q psy6783 678 NVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGE 757 (1119)
Q Consensus 678 ~V~Fd~~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~ 757 (1119)
++++++.+|+..+....+.|+.||+|+++
T Consensus 290 ---------------------------------------------------~~~~~~~lg~~~~~~~~~~h~~~glv~~~ 318 (507)
T PRK01611 290 ---------------------------------------------------LKAALKALGYDPDALEVLLHQMVGLVRGG 318 (507)
T ss_pred ---------------------------------------------------HHHHHHHcCCCcccceEEEEEEEEeeECC
Confidence 34555666754221245899999999999
Q ss_pred CCcccccccCCeeeHHHHHHHHHHHHHHHHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCccccccccccccc
Q psy6783 758 DRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDR 837 (1119)
Q Consensus 758 ~~~~~str~G~~v~l~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~ 837 (1119)
+|+|||||+|+++.++|+|+++..++.+.+.+
T Consensus 319 ~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~------------------------------------------------ 350 (507)
T PRK01611 319 EGVKMSTRAGNVVTLDDLLDEAVGRARELIEE------------------------------------------------ 350 (507)
T ss_pred CCCcccCCCCceeEHHHHHHHHHHHHHHHHHh------------------------------------------------
Confidence 99999999999999999999876544333321
Q ss_pred CCchhhhHHHHHHHHHHHHhhCCCCCCCCCCCCCCcccccccCCCCCcCCCCCCCchhHHHHHHhhhccccccccccccC
Q psy6783 838 GNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLCWVWRGVGRG 917 (1119)
Q Consensus 838 g~t~~yl~y~~~rl~si~rk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 917 (1119)
T Consensus 351 -------------------------------------------------------------------------------- 350 (507)
T PRK01611 351 -------------------------------------------------------------------------------- 350 (507)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhcchhhhhhHHhhhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHH
Q psy6783 918 QEEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYA 997 (1119)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYa 997 (1119)
| ++|+.||++|++|++|++++.++++|||+++++++|||+||+|||
T Consensus 351 ----------------------~------------~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa 396 (507)
T PRK01611 351 ----------------------K------------EIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYA 396 (507)
T ss_pred ----------------------h------------hhhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHH
Confidence 0 456788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccc
Q psy6783 998 YTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077 (1119)
Q Consensus 998 hARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~V 1077 (1119)
|||+|||+||++..... + .. ..+.++.|+.|+..|.+||+++.+|+++++||.+|+||++||+.||+||++|+
T Consensus 397 ~aR~~sil~k~~~~~~~--~---~~-~~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la~~f~~fY~~~~- 469 (507)
T PRK01611 397 HARICSILRKAAEAGID--L---LL-ALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRVL- 469 (507)
T ss_pred HHHHHHHHHhhhccCcc--c---cc-cccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHCC-
Confidence 99999999998532110 0 11 22668999999999999999999999999999999999999999999999999
Q ss_pred cccCCccchhhhHhHHHHHHHHHHHHHHHHhhhcCCCcCcCC
Q psy6783 1078 IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119 (1119)
Q Consensus 1078 L~~~~~~~~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~erM 1119 (1119)
+.++.+ +.+.+||+||.||++||++||.||||+|||||
T Consensus 470 l~~~~~----~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~e~M 507 (507)
T PRK01611 470 LKDEEE----ELRNARLALVKATAQVLKNGLDLLGISAPERM 507 (507)
T ss_pred CCCChH----HHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 653321 16899999999999999999999999999999
No 7
>KOG1195|consensus
Probab=100.00 E-value=2.5e-92 Score=795.40 Aligned_cols=555 Identities=28% Similarity=0.385 Sum_probs=470.9
Q ss_pred HHHHHHHHHHHHhcCcCC--CCcceEeecCcccccCCccchhchHHHHHHHhhccCCCCCHHHHHHHHHHhhcccccCCc
Q psy6783 210 YLSDVFTHAVQVAFPELG--DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNP 287 (1119)
Q Consensus 210 ~l~~~i~~al~~~~~~~~--~~~~~ve~p~~~~~~~~GD~atn~Am~lAK~~k~~~~~~~P~~IA~~i~~~l~~~l~~~~ 287 (1119)
.++..|.+++..+-. .+ ..++..|.+.++ +-||.-. .|.+.. ..|.+.|...++. ++.+
T Consensus 4 ~lr~~i~e~l~~~~~-~~~~~i~~~le~~~~~---~r~~~~~----~lp~i~------~~~~~~a~~~~e~----~~~~- 64 (567)
T KOG1195|consen 4 VLRQYISEELSKISG-VDSSLIPPALEQSNSM---DRPDLLL----PLPRIR------VQGKEDALRWAEA----LPCN- 64 (567)
T ss_pred HHHHHHHHHhhhhhC-CCHHHhHHHHHhhccC---CCCCccc----cCcccc------cCCHHHHHHHHHh----cccc-
Confidence 455556666665532 21 123345656666 7788754 455553 4455899999998 7665
Q ss_pred ccccceeeEEEeCCeEEEEEeCHHHHH-HHHHHHHHcCCCCCC--CCCCcEEEEEeeCCCCCCCccccccchhcHHHHHH
Q psy6783 288 SLAKVIDKIEVAKPGFVNVFLSRVYAG-EQIKDIIVNGVQPPT--LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364 (1119)
Q Consensus 288 ~~~~~ie~vevagpGFINf~L~~~~~~-~~l~~il~~g~~~~~--~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLa 364 (1119)
..++++...|| |++|+|++..+. .++..|..++..||. .+.+++|+|||||||++||+||||+||||||..++
T Consensus 65 ---~~v~~~~~~~~-~~~f~ln~~~~~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~fla 140 (567)
T KOG1195|consen 65 ---RIVEEVGASGP-FVQFFLNRRRLIKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLA 140 (567)
T ss_pred ---cchHHHhcCCC-eEEEEecHHHHHHHHHHHHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhh
Confidence 68999999997 999999987655 556667777777763 57789999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCCh
Q psy6783 365 RLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDP 444 (1119)
Q Consensus 365 ril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~ 444 (1119)
|+.++.||+|+|.||+||||+|||+++.++...-++.....+||.+|.+.|+++++..+.+++..+.|++.+.+||.||.
T Consensus 141 nl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~ 220 (567)
T KOG1195|consen 141 NLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDE 220 (567)
T ss_pred hhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccH
Confidence 99999999999999999999999999998865555555567899999999999999888777778999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCcEEec-cchh-hhhHHHHHHHHHHHHCCCeEeeCCCeEEEcCCCCC--CCeEEEe
Q psy6783 445 DYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGES-FYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGS--IPMTIVK 520 (1119)
Q Consensus 445 e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~-~geS-~y~~~v~~vi~~L~~kG~~~e~dGA~~~~~ddkd~--~~~VL~K 520 (1119)
+...+|++|++.|++++.++|+|||++||. .||| .+++.++++++.+++.|++.+.||+.++.+.+.|. ...+++|
T Consensus 221 e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gESqv~~e~~~~~~d~~rs~~l~~e~dG~~vidL~~~~~~~~~~~V~k 300 (567)
T KOG1195|consen 221 EHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGESQVSNEKMQEALDLLRSANLTEEIDGTIVIDLSKIDKKAGKAVVQK 300 (567)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchHHHHHHHHHHHHHHHHhcCCcccCCCcEEEEecccCcccceEEEEc
Confidence 999999999999999999999999999986 6898 66789999999999999888999999988875443 2367899
Q ss_pred cCCCcccchhhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHH
Q psy6783 521 SDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLI 600 (1119)
Q Consensus 521 SDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~ 600 (1119)
||||++|.|||||+++.|.++|+||++|||+|++|+.||.+
T Consensus 301 sdgttLYltRdiaaal~Rl~~y~fdr~iYVvd~~Q~~hf~~--------------------------------------- 341 (567)
T KOG1195|consen 301 SDGTTLYLTRDIAAALDRLEKYSFDRLIYVVDSQQKDHFCQ--------------------------------------- 341 (567)
T ss_pred CCCceehHHHHHHHHHHHHHhcCcceEEEEechHHHHHHHH---------------------------------------
Confidence 99999999999999999999999999999999999999987
Q ss_pred HHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccc
Q psy6783 601 AHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT 680 (1119)
Q Consensus 601 ~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~ 680 (1119)
T Consensus 342 -------------------------------------------------------------------------------- 341 (567)
T KOG1195|consen 342 -------------------------------------------------------------------------------- 341 (567)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccchhhhhHHHHHHHHHhcCCeeeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCc
Q psy6783 681 LTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK 760 (1119)
Q Consensus 681 Fd~~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~ 760 (1119)
++.+.+.+|.. ++.+++|++||+|-|
T Consensus 342 ------------------------------------------------lf~ilk~mg~~--~a~~~qHV~~G~v~G---- 367 (567)
T KOG1195|consen 342 ------------------------------------------------LFEILKKMGFD--WAKKLQHVNFGRVQG---- 367 (567)
T ss_pred ------------------------------------------------HHHHHHHhCch--hhhhcceeccccccc----
Confidence 34445555652 356899999999976
Q ss_pred ccccccCCeeeHHHHHHHHHHHHHHHHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCc
Q psy6783 761 KFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNT 840 (1119)
Q Consensus 761 ~~str~G~~v~l~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t 840 (1119)
||||+|.++.++|+|+++.+++++.|+.... +
T Consensus 368 -msTRkG~~~fl~dil~e~re~m~e~M~s~~t-~---------------------------------------------- 399 (567)
T KOG1195|consen 368 -MSTRKGKVVFLDDILEEAREQMLEVMASNKT-K---------------------------------------------- 399 (567)
T ss_pred -ccccCCceeeHHHHHHHHHHHHHHHHHhccC-C----------------------------------------------
Confidence 8999999999999999999988888753210 0
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCCCCCCCCCCCcccccccCCCCCcCCCCCCCchhHHHHHHhhhccccccccccccCccc
Q psy6783 841 AVYLLYAYTRIASIARTAGINSEDPPEPDPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLCWVWRGVGRGQEE 920 (1119)
Q Consensus 841 ~~yl~y~~~rl~si~rk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 920 (1119)
T Consensus 400 -------------------------------------------------------------------------------- 399 (567)
T KOG1195|consen 400 -------------------------------------------------------------------------------- 399 (567)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcchhhhhhHHhhhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHHHHH
Q psy6783 921 VQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTR 1000 (1119)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahAR 1000 (1119)
.++..+.+++|+.+|++||.++|+..+|.++|.|+|++|++++|+||+||||+|||
T Consensus 400 ------------------------~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsR 455 (567)
T KOG1195|consen 400 ------------------------PVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSR 455 (567)
T ss_pred ------------------------CCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHHHH
Confidence 01112356788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhccccccc
Q psy6783 1001 IASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEK 1080 (1119)
Q Consensus 1001 i~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~VL~~ 1080 (1119)
++||+||.+... ++.+...++..|++|....|+++|.+||++++.+.++++||.|..||+.||++++++|...+|.+.
T Consensus 456 L~Slerk~~~~~--~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~l~V~d~ 533 (567)
T KOG1195|consen 456 LRSLERKFSDVT--LDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKILWVKDS 533 (567)
T ss_pred HHHHHHhccccC--chhhhccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhheeecCC
Confidence 999999996321 111234566788999977788999999999999999999999999999999999999999999864
Q ss_pred CCccchhhhHhHHHHHHHHHHHHHHHHhhhcCCCcCcCC
Q psy6783 1081 DAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119 (1119)
Q Consensus 1081 ~~~~~~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~erM 1119 (1119)
+ .++..+||+|+.|+|+||.|||.||||.|+++|
T Consensus 534 ~-----~eia~aRL~Lf~AvRqVL~ngm~lLGitPv~~M 567 (567)
T KOG1195|consen 534 P-----MEIALARLLLFSAVRQVLNNGMRLLGITPVDRM 567 (567)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHhHHHHhCCCccccC
Confidence 4 368999999999999999999999999999999
No 8
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=100.00 E-value=3.3e-72 Score=643.75 Aligned_cols=342 Identities=38% Similarity=0.592 Sum_probs=290.9
Q ss_pred HHHHHHcCCCC-CCCCCCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHH
Q psy6783 317 IKDIIVNGVQP-PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQ 395 (1119)
Q Consensus 317 l~~il~~g~~~-~~~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~ 395 (1119)
|++|+..|..| ...+++++|+||||||||||||||||+|||||||+|||||+++||+|+|+|||||||+|||+|+.+++
T Consensus 2 i~~il~~~~~y~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~ 81 (354)
T PF00750_consen 2 INEILEKGEEYGSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYK 81 (354)
T ss_dssp HHHHHHHGGGTT--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHH
T ss_pred HHHHHhcchhcccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHH
Confidence 67788888888 34678999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCCCCChHHHHHHHHHhcccCCC-------cHHHHHHHHHHHHHHhcCChhHHHHHHH-HHHHHHHHHHHHHhh
Q psy6783 396 DKFPDYLTKSPPIADLQAFYKESKKRFDE-------DEIFKKRAYQCVVALQRFDPDYKKAWEM-ICDVSRRDFQKIYDR 467 (1119)
Q Consensus 396 ~r~~e~~~~~~~i~~l~~~y~~~~~~~~~-------de~~~~~a~~~~~~le~gd~e~~~lW~~-~~~~s~~~~~~~y~~ 467 (1119)
.+.++...+.+++.++.++|+..+..... .+.|.+++++.+.++|+||++..++|++ ++++++++|..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~ 161 (354)
T PF00750_consen 82 KFGDEELLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIR 161 (354)
T ss_dssp HHHHHHTSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT--
T ss_pred hhhhhhhcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665444567899999999876643321 2348899999999999999999999999 999999999999999
Q ss_pred cCcEEeccchhhhhHHHHHHHHHHHHCCCeEeeCCCeEEEcCCC-CCCCeEEEecCCCcccchhhHHHHHHHhhhhCCCE
Q psy6783 468 LNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDR-GSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADW 546 (1119)
Q Consensus 468 l~i~f~~~geS~y~~~v~~vi~~L~~kG~~~e~dGA~~~~~ddk-d~~~~VL~KSDGt~tY~t~DIAy~~~R~~~~~~d~ 546 (1119)
+|++|++ |||+|.+.+++++++|+++|+++++|||+|+..++. +..|+||+|||||+||+|+|||||++|++.++||+
T Consensus 162 fDv~~~E-~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~g~~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~~d~ 240 (354)
T PF00750_consen 162 FDVWFDE-SESFYSGKVDEVLERLKEKGLLYESDGALWIDLTKFGDDKDRVLRKSDGTSTYLTRDIAYHLYRFEEYGFDK 240 (354)
T ss_dssp -SEEEEH-CHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGCCTSTSS-EEEEETTSEB-HHHHHHHHHHHHHCCSS-SE
T ss_pred hCcCccc-chhhhhhHHHHHHHHHHhCCcEEecCCcEEEechhcCCCCcceEEcCCCceEEEcchHHHHHHHHhhhcccc
Confidence 9999987 899999999999999999999999999999987743 23578999999999999999999999999999999
Q ss_pred EEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHH
Q psy6783 547 IVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKE 626 (1119)
Q Consensus 547 iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~ 626 (1119)
+|||||++|..||.+
T Consensus 241 ~iyV~~~~q~~hf~~----------------------------------------------------------------- 255 (354)
T PF00750_consen 241 IIYVVGADQKGHFKQ----------------------------------------------------------------- 255 (354)
T ss_dssp EEEEEEGGGHHHHHH-----------------------------------------------------------------
T ss_pred EEEEecCchhhHHHH-----------------------------------------------------------------
Confidence 999999999999988
Q ss_pred HhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccccccchhhhhHHHHHHHHHhcCCe
Q psy6783 627 SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNL 706 (1119)
Q Consensus 627 ~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~gES~y~~~~~~vi~~l~~~g~~ 706 (1119)
T Consensus 256 -------------------------------------------------------------------------------- 255 (354)
T PF00750_consen 256 -------------------------------------------------------------------------------- 255 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCc-ccccccCCeeeHHHHHHHHHHHHHH
Q psy6783 707 SLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK-KFKTRSGDTVKLSELLDEGLRRSLD 785 (1119)
Q Consensus 707 ~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~-~~str~G~~v~l~~ll~~~~~~~~~ 785 (1119)
|+++++.+|+ ++...++.|++||+|+.++|+ +||||+|+++.|+|+|+++.+++.+
T Consensus 256 ----------------------l~~~l~~lg~-~~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 256 ----------------------LFAILEALGY-DPEAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALE 312 (354)
T ss_dssp ----------------------HHHHHHHTT--HHHHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHhCC-CCCCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHH
Confidence 3445555554 223458999999999999998 9999999999999999999999999
Q ss_pred HHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccc
Q psy6783 786 KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 830 (1119)
Q Consensus 786 ~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~ 830 (1119)
++++.+. ++.++.+.+|+.||+|||+|+||+.+|.++|+|||
T Consensus 313 -~~~~~~~--~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 313 -IMEKNPD--LSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp -HHHHHTT--CTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred -HHhcccC--CChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 7776654 88899999999999999999999999999999998
No 9
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=100.00 E-value=5.9e-46 Score=398.70 Aligned_cols=173 Identities=39% Similarity=0.611 Sum_probs=158.7
Q ss_pred EEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHH
Q psy6783 335 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 414 (1119)
Q Consensus 335 kV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~ 414 (1119)
+|+||||||||+||+||||+||+++||+|+|+|+++||+|.++||+||||+||++++.+...
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~------------------ 62 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK------------------ 62 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHH------------------
Confidence 58999999999999999999999999999999999999999999999999999998765320
Q ss_pred HHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEe-ccchhhhhHHHHHHHHHHHH
Q psy6783 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT-ERGESFYQKHMEQLVPYLEK 493 (1119)
Q Consensus 415 y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~-~~geS~y~~~v~~vi~~L~~ 493 (1119)
|+.+++.+.+.|.++|.+|||.|+ +.+||.+.+.+.++++.|++
T Consensus 63 -----------------------------------~~~~~~~~~~~~~~~~~~L~i~~d~~~~es~~~~~~~~~i~~L~~ 107 (212)
T cd00671 63 -----------------------------------WRKLVEESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLEE 107 (212)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHhCCcCceecchhhhhhHHHHHHHHHHH
Confidence 889999999999999999999997 45788888899999999999
Q ss_pred CCCeEeeCCCeEEEcCCC-CCCCeEEEecCCCcccchhhHHHHHHHhhhhCCCEEEEEeecCcccchhh
Q psy6783 494 KGLLELDDGRKIMWGEDR-GSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRL 561 (1119)
Q Consensus 494 kG~~~e~dGA~~~~~ddk-d~~~~VL~KSDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~ 561 (1119)
+|++|+.+|+.|...+.. +.+++||+||||++||.|+|||||++|++ +++|++|||+|++|..|+.+
T Consensus 108 ~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~~~~~~~~ 175 (212)
T cd00671 108 LGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE-RGADKIIYVVGADHHGHFKR 175 (212)
T ss_pred CCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh-cCCCEEEEEECCCHHHHHHH
Confidence 999999999988766533 33579999999999999999999999997 89999999999999988887
No 10
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=100.00 E-value=1.6e-41 Score=390.13 Aligned_cols=304 Identities=29% Similarity=0.473 Sum_probs=235.5
Q ss_pred CcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCc
Q psy6783 554 GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 633 (1119)
Q Consensus 554 ~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~ 633 (1119)
.-.+|+||+ |||||||+|+|||+++||+|+|.||+||||+|||+|++++.++++++....+|+.+|.++|+.++.....
T Consensus 32 ~kplHvGHl-R~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~ 110 (354)
T PF00750_consen 32 TKPLHVGHL-RNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHLEDLYVGANKRDEA 110 (354)
T ss_dssp TSS-BHHHH-HHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCcc-hhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccchhhhhhhhhhhhhh
Confidence 447899998 9999999999999999999999999999999999999999998887766778999999999988766544
Q ss_pred cH-------HHHHHHHHHHHHhhcCChhHHHHHHH-HHHhhHHHHHHHHHHhcccccc-c--ccchhhhhHHHHHHHHHh
Q psy6783 634 DE-------IFKKRAYQCVVALQRFDPDYKKAWEM-ICDVSRRDFQKIYDRLNVTLTE-R--GESFYQKHMEQLVPYLEK 702 (1119)
Q Consensus 634 d~-------~~~~~a~~~~~~le~gd~e~~~lW~~-~rd~Si~~~~~~Y~rL~V~Fd~-~--gES~y~~~~~~vi~~l~~ 702 (1119)
++ .+.+++++++.++|+||++.+++|++ +++++.+. |.+|+|.||. . +||+|.+.++++++.|++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~----l~~l~i~fDv~~~E~Es~~~~~v~~vl~~L~e 186 (354)
T PF00750_consen 111 DEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKET----LQRLYIRFDVWFDESESFYSGKVDEVLERLKE 186 (354)
T ss_dssp TTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHH----HHHTT---SEEEEHCHHHHTTHHHHHHHHHHC
T ss_pred hhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHH----HHHHHHHhCcCcccchhhhhhHHHHHHHHHHh
Confidence 44 38999999999999999999999999 88887655 5555555552 2 899899999999999999
Q ss_pred cCCeeeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHHHH
Q psy6783 703 KGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRR 782 (1119)
Q Consensus 703 ~g~~~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~~~ 782 (1119)
+|+++.++|+.++++++.|. +. +.|+ .++||++.|++++|.++..|
T Consensus 187 ~g~~~~~dGa~~i~~~~~g~-----------------~k----------~~Vl-------~ksDGt~~Y~trDiA~~~~r 232 (354)
T PF00750_consen 187 KGLLYESDGALWIDLTKFGD-----------------DK----------DRVL-------RKSDGTSTYLTRDIAYHLYR 232 (354)
T ss_dssp TTTEEEETTEEEEEGCCTST-----------------SS-----------EEE-------EETTSEB-HHHHHHHHHHHH
T ss_pred CCcEEecCCcEEEechhcCC-----------------CC----------cceE-------EcCCCceEEEcchHHHHHHH
Confidence 99999999998887543321 10 1232 45789999999999888764
Q ss_pred HHHHHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCCCC
Q psy6783 783 SLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINS 862 (1119)
Q Consensus 783 ~~~~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~~~ 862 (1119)
. . .|.+|+|++.-|+. ...||.||+.+++.+|+.+
T Consensus 233 ~----~--------------------------------------~~~~d~~iyV~~~~---q~~hf~~l~~~l~~lg~~~ 267 (354)
T PF00750_consen 233 F----E--------------------------------------EYGFDKIIYVVGAD---QKGHFKQLFAILEALGYDP 267 (354)
T ss_dssp H----C--------------------------------------CSS-SEEEEEEEGG---GHHHHHHHHHHHHHTT-HH
T ss_pred H----h--------------------------------------hhccccEEEEecCc---hhhHHHHHHHHHHHhCCCC
Confidence 2 0 12233444433332 5679999999999999744
Q ss_pred CCCCCCCCCCcccccccCCCCCcCCCC-------C-CCchhHHHHHHhhhccccccccccccCccchhhhhhcchhhhhh
Q psy6783 863 EDPPEPDPSQSEVEDRCCPSHAKTHRK-------P-PFTYTELIEQALKENGLCWVWRGVGRGQEEVQDSLRGYGLRRSL 934 (1119)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1119)
... ++.|..||+.....++ + .+.+.|||++|. .+|+
T Consensus 268 ~~~--------~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~----------------------------~~a~ 311 (354)
T PF00750_consen 268 EAV--------KLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAV----------------------------ERAL 311 (354)
T ss_dssp HHC--------TEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHH----------------------------HHHH
T ss_pred CCC--------EEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHH----------------------------HHHH
Confidence 322 3889999998444443 2 556666666665 3777
Q ss_pred HHhhhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccch
Q psy6783 935 DKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSF 980 (1119)
Q Consensus 935 ~~~~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~ 980 (1119)
+ +++++.. ++.++.+++|+.||+|||+|+||+++|.++|+|||
T Consensus 312 ~-~~~~~~~--~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 312 E-IMEKNPD--LSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp H-HHHHHTT--CTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred H-HHhcccC--CChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 7 7777654 99999999999999999999999999999999998
No 11
>KOG4426|consensus
Probab=100.00 E-value=2.8e-40 Score=365.42 Aligned_cols=246 Identities=50% Similarity=0.745 Sum_probs=205.0
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
..|.||| ||||||++||||+|+.|++|.|+||+|||||||||||..+.+++|++....+||++|+-+|+++++++++||
T Consensus 202 eMHVGHL-RSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQvFYkeSKkrFD~de 280 (656)
T KOG4426|consen 202 EMHVGHL-RSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQVFYKESKKRFDEDE 280 (656)
T ss_pred Hhhhhhh-hhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHHHHHHHHHhccCcCH
Confidence 4699999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccccccchhhhhHHHHHHHHHhcCCeeeecCceEE
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV 715 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~v 715 (1119)
+|++||++++++||.|||+.++.|..+||+|..+|+++|.||+|+..+.|||||++.|.+|+++++.+|++.+++|..|+
T Consensus 281 eFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GESFYq~~m~~vveel~~kglvee~~Gr~i~ 360 (656)
T KOG4426|consen 281 EFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKERGESFYQDRMAEVVEELKSKGLVEEDDGRRIM 360 (656)
T ss_pred HHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhcchhhhhhHHHHHHHHHhcCCceeecCCceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred EEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHHHHHHHHHHhccCCCC
Q psy6783 716 YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTE 795 (1119)
Q Consensus 716 ~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~~~~~~~l~~~~~~~~ 795 (1119)
++.+ .++ |. .|++ +||-.-|-+.+|.....|..+. +. ++
T Consensus 361 f~~g----------------~~I-----------PL-tvVK--------SDGGftYdtsDlaAl~yRl~EE---ka-dw- 399 (656)
T KOG4426|consen 361 FPEG----------------CDI-----------PL-TVVK--------SDGGFTYDTSDLAALKYRLNEE---KA-DW- 399 (656)
T ss_pred ccCC----------------CCc-----------ce-EEEe--------cCCCcccccchHHHHHHHHHHh---hc-Ce-
Confidence 7421 111 11 3433 3455555555454333332111 11 01
Q ss_pred CChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCCCCCCCCCCCCCCccc
Q psy6783 796 LTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSEV 875 (1119)
Q Consensus 796 ~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~~~~~~~~~~~~~~~~ 875 (1119)
.|.+.| - | .+-||.-++..+|++||- |++--.+
T Consensus 400 ----------------iIYVvD------------~-------G-----Qs~Hf~t~fkAar~~gwl-------d~~~~RV 432 (656)
T KOG4426|consen 400 ----------------IIYVVD------------S-------G-----QSQHFNTIFKAARKAGWL-------DPTYPRV 432 (656)
T ss_pred ----------------EEEEee------------C-------c-----hhHHHHHHHHHHHHcCcc-------CCCccce
Confidence 233334 1 1 234888999999999994 4555578
Q ss_pred ccccCCCCCcCCCCC
Q psy6783 876 EDRCCPSHAKTHRKP 890 (1119)
Q Consensus 876 ~~~~~~~~~~~~~~~ 890 (1119)
+|..||.+.+.++|.
T Consensus 433 ~HvgFGlVLGeD~Kk 447 (656)
T KOG4426|consen 433 EHVGFGLVLGEDKKK 447 (656)
T ss_pred eeeeeeeEEccCccc
Confidence 999999999999875
No 12
>KOG1195|consensus
Probab=100.00 E-value=1.7e-40 Score=376.04 Aligned_cols=242 Identities=25% Similarity=0.359 Sum_probs=204.0
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCcc
Q psy6783 555 QGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDED 634 (1119)
Q Consensus 555 Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d 634 (1119)
-.+|.||| ||||||++++||++++||+|+|+||+||||+|||++..||+++++++.+..+||.||.+.|+++++.++.+
T Consensus 123 K~FHvGhL-RsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~ 201 (567)
T KOG1195|consen 123 KPFHVGHL-RSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKD 201 (567)
T ss_pred cccccchh-hhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhC
Confidence 37899998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc-cccch-hhhhHHHHHHHHHhcCCeeeecCc
Q psy6783 635 EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESF-YQKHMEQLVPYLEKKGNLSLTKKL 712 (1119)
Q Consensus 635 ~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~-~gES~-y~~~~~~vi~~l~~~g~~~~~~~~ 712 (1119)
++..+.|++.|.+||+||++++++|++||++||++|.++|+||||+||. .|||+ |++.+..+++.+++.|+....+|.
T Consensus 202 ~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gESqv~~e~~~~~~d~~rs~~l~~e~dG~ 281 (567)
T KOG1195|consen 202 PDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGESQVSNEKMQEALDLLRSANLTEEIDGT 281 (567)
T ss_pred cchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchHHHHHHHHHHHHHHHHhcCCcccCCCc
Confidence 9999999999999999999999999999999999999999999999995 89996 589999999999999977777888
Q ss_pred eEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHHHHHHHHHHhccC
Q psy6783 713 GIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNR 792 (1119)
Q Consensus 713 ~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~~~~~~~l~~~~~ 792 (1119)
.++++.+.+. + .+.+.|- .+||++.|++++|..+++|. .
T Consensus 282 ~vidL~~~~~----------------------~---~~~~~V~--------ksdgttLYltRdiaaal~Rl----~---- 320 (567)
T KOG1195|consen 282 IVIDLSKIDK----------------------K---AGKAVVQ--------KSDGTTLYLTRDIAAALDRL----E---- 320 (567)
T ss_pred EEEEecccCc----------------------c---cceEEEE--------cCCCceehHHHHHHHHHHHH----H----
Confidence 8887653311 1 2334553 46899999999998777652 1
Q ss_pred CCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Q psy6783 793 HTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQ 872 (1119)
Q Consensus 793 ~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~~~~~~~~~~~~~ 872 (1119)
.|.+++|++..-+. .-.||++++-|++++|.+|.+.
T Consensus 321 ----------------------------------~y~fdr~iYVvd~~---Q~~hf~~lf~ilk~mg~~~a~~------- 356 (567)
T KOG1195|consen 321 ----------------------------------KYSFDRLIYVVDSQ---QKDHFCQLFEILKKMGFDWAKK------- 356 (567)
T ss_pred ----------------------------------hcCcceEEEEechH---HHHHHHHHHHHHHHhCchhhhh-------
Confidence 13344444422221 2359999999999999987432
Q ss_pred cccccccCCCCC
Q psy6783 873 SEVEDRCCPSHA 884 (1119)
Q Consensus 873 ~~~~~~~~~~~~ 884 (1119)
|+|.+||.+.
T Consensus 357 --~qHV~~G~v~ 366 (567)
T KOG1195|consen 357 --LQHVNFGRVQ 366 (567)
T ss_pred --cceecccccc
Confidence 5566665554
No 13
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.9e-37 Score=370.94 Aligned_cols=257 Identities=27% Similarity=0.433 Sum_probs=214.2
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
.+|+||+ |||||||+|+|||+++||+|+|.||+||||+|||+|++|+++++++..+...++.+|..+|+++++++++||
T Consensus 127 plHvGH~-R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 205 (562)
T PRK12451 127 PFSMGHL-RSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELFKLYVQFHEEVKDDE 205 (562)
T ss_pred Ccccchh-hhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHHHHHHHHHHhhccCh
Confidence 7899998 999999999999999999999999999999999999999998876655566789999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc-cccchhhhhHHHHHHHHHhcCCeeeecCceE
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGNLSLTKKLGI 714 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~-~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~ 714 (1119)
++++++++++.+||+||++.+++|+++|++|+++|+++|+||||+||+ .|||+|.++++++++.|+++|+++.++|+.+
T Consensus 206 ~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~ 285 (562)
T PRK12451 206 ELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQGEAFYNDLMEDFIGILEEHDLLEESEGALV 285 (562)
T ss_pred hHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecchHhhhhhHHHHHHHHHHCCCEEecCCeEE
Confidence 999999999999999999999999999999999999999999999996 7999999889999999999999999999988
Q ss_pred EEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHHHHHHHHHHhccCCC
Q psy6783 715 VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT 794 (1119)
Q Consensus 715 v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~~~~~~~l~~~~~~~ 794 (1119)
+++++. |. ++ +|+ .++||++.|++.+|.+...|.. +
T Consensus 286 ~~~~~~----------------g~--~~----------~vl-------~ksDGt~~Y~t~DiA~~~~k~~----~----- 321 (562)
T PRK12451 286 VNLEEE----------------GM--PP----------CLI-------RKSDGATIYATRDLTAALYRQN----T----- 321 (562)
T ss_pred EEeccc----------------CC--Cc----------eEE-------EeCCCccccchhHHHHHHHHhh----c-----
Confidence 775321 11 11 233 5679999999999988776521 0
Q ss_pred CCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCCCCCCCCCCCCCCcc
Q psy6783 795 ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874 (1119)
Q Consensus 795 ~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~~~~~~~~~~~~~~~ 874 (1119)
|.+|++++.-|.. ...|+.|++.+++.+|+.+++ +
T Consensus 322 ---------------------------------~~~d~~IyV~g~d---q~~h~~~l~~~~~~lg~~~~~---------~ 356 (562)
T PRK12451 322 ---------------------------------FGFDKALYVVGPE---QSLHFNQFFTVLKKLGYTWVD---------G 356 (562)
T ss_pred ---------------------------------cCCCEEEEEeCCc---HHHHHHHHHHHHHHcCCCccc---------C
Confidence 2234444443332 457999999999999986422 3
Q ss_pred cccccCCCCCc-----CCCCC-CCchhHHHHHHh
Q psy6783 875 VEDRCCPSHAK-----THRKP-PFTYTELIEQAL 902 (1119)
Q Consensus 875 ~~~~~~~~~~~-----~~~~~-~~~~~~~~~~a~ 902 (1119)
++|..||++.+ +.|++ .+++.|||++|.
T Consensus 357 l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea~ 390 (562)
T PRK12451 357 MEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEAI 390 (562)
T ss_pred eEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHHH
Confidence 88999999954 33333 566666666654
No 14
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=2.5e-36 Score=365.78 Aligned_cols=259 Identities=38% Similarity=0.594 Sum_probs=211.7
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCC-CCCCCchhhHHHHHHHHhhhcCcc
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY-LTKSPPIADLQAFYKESKKRFDED 634 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~-~~~~~~i~~L~~~Y~~~~~~~~~d 634 (1119)
.+|+||+ |||||||+|+|||+++||+|+|.||+||||+|||+|++++.+.++++ .+...++.+|..+|+++++.+++|
T Consensus 131 plHvGHl-RsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~Y~~~~~~~~~~ 209 (576)
T PLN02286 131 EMHVGHL-RSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDED 209 (576)
T ss_pred CCccccc-cchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHHHHHHHHhhhhccCC
Confidence 7899999 99999999999999999999999999999999999999997644443 345568999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccccccchhhhhHHHHHHHHHhcCCeeeecCceE
Q psy6783 635 EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGI 714 (1119)
Q Consensus 635 ~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~ 714 (1119)
|++.+++++++.+||+|||+++.+|+++|++|+++|+++|++|||+||.+|||+|++.++++++.|+++|++++++|+.|
T Consensus 210 ~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~ges~y~~~~~~vi~~L~~~g~~~e~dGa~~ 289 (576)
T PLN02286 210 EEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARV 289 (576)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCchhhhhhHHHHHHHHHHCCCEEeeCCceE
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999888
Q ss_pred EEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHHHHHHHHHHhccCCC
Q psy6783 715 VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT 794 (1119)
Q Consensus 715 v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~~~~~~~l~~~~~~~ 794 (1119)
+++.+. + + .+|+ .++||++.|++.+|.++..|. .+
T Consensus 290 v~l~~~----------------~---~----------~~vl-------~ksDGt~tY~t~DIA~~~~k~----~~----- 324 (576)
T PLN02286 290 IFVEGF----------------D---I----------PLIV-------VKSDGGFNYASTDLAALWYRL----NE----- 324 (576)
T ss_pred eeccCC----------------C---C----------ceEE-------EECCCchhhHHHHHHHHHHHH----hc-----
Confidence 764211 0 0 1232 567999999999999887652 10
Q ss_pred CCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCCCCCCCCCCCCCCcc
Q psy6783 795 ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874 (1119)
Q Consensus 795 ~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~~~~~~~~~~~~~~~ 874 (1119)
|.+|++++.-|.. ...|+.|++.+++.+|+.+.+.. .+
T Consensus 325 ---------------------------------~~~d~~IyVvg~~---q~~hf~~v~~~l~~lG~~~~~~~------~~ 362 (576)
T PLN02286 325 ---------------------------------EKAEWIIYVTDVG---QQQHFDMVFKAAKRAGWLPEDTY------PR 362 (576)
T ss_pred ---------------------------------cCCCEEEEEEeCc---HHHHHHHHHHHHHHcCCCccccC------Cc
Confidence 1223444433332 45799999999999998643211 13
Q ss_pred cccccCCCCCcCCCC------C-CCchhHHHHHHh
Q psy6783 875 VEDRCCPSHAKTHRK------P-PFTYTELIEQAL 902 (1119)
Q Consensus 875 ~~~~~~~~~~~~~~~------~-~~~~~~~~~~a~ 902 (1119)
|.|..||++....++ + .+++.|||++|.
T Consensus 363 l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~ 397 (576)
T PLN02286 363 LEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAK 397 (576)
T ss_pred eEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHH
Confidence 899999999633332 2 566677777664
No 15
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-35 Score=351.08 Aligned_cols=260 Identities=27% Similarity=0.369 Sum_probs=211.4
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCC-CCCCchhhHHHHHHHHhhhcCcc
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKSPPIADLQAFYKESKKRFDED 634 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~-~~~~~i~~L~~~Y~~~~~~~~~d 634 (1119)
.+|+||+ |||||||+|+|||+++||+|+|.||+||||+|||+|++++++++.+.. ...+++.++.++|+++++++++|
T Consensus 131 plHiGHl-R~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~ 209 (577)
T COG0018 131 PLHIGHL-RNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEED 209 (577)
T ss_pred Ccccchh-hhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhC
Confidence 7899999 999999999999999999999999999999999999999999988665 46778999999999999999888
Q ss_pred HHH-HHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc---cccchhhhhHHHHHHHHHhcCCeeeec
Q psy6783 635 EIF-KKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSLTK 710 (1119)
Q Consensus 635 ~~~-~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~---~gES~y~~~~~~vi~~l~~~g~~~~~~ 710 (1119)
+.. ..++++++.++|.||+++ ++|++++++|+++++++|+||||+||. .|||+|+.+++++++.|+++|+.++++
T Consensus 210 ~~~~~~~~~~~~~k~e~~d~~~-~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~ 288 (577)
T COG0018 210 PGNDEEEAREEVEKLESGDEEA-ELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDD 288 (577)
T ss_pred cccchHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeC
Confidence 873 389999999999999999 999999999999999999999999994 488889999999999999999999999
Q ss_pred CceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHHHHHHHHHHhc
Q psy6783 711 KLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK 790 (1119)
Q Consensus 711 ~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~~~~~~~l~~~ 790 (1119)
|+.++++.. .. ..|. ++ ++|+ .++||++.|++++|.++..|..
T Consensus 289 GA~~vdl~~------------~~-~~gd-~~----------~~vl-------~KSDGt~lY~t~DIAy~~~K~~------ 331 (577)
T COG0018 289 GALVVDLLK------------FK-KFGD-DK----------DRVL-------QKSDGTYLYFTRDIAYHLYKFE------ 331 (577)
T ss_pred CeEEEehhh------------hh-hcCC-CC----------CeEE-------EEcCCCeeeehhHHHHHHHHHh------
Confidence 999888431 11 1232 11 2343 5579999999999999887632
Q ss_pred cCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCCCCCCCCCCCC
Q psy6783 791 NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDP 870 (1119)
Q Consensus 791 ~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~~~~~~~~~~~ 870 (1119)
+.+|++++.-|.. ...|+.|++.+++++|+.++..
T Consensus 332 -------------------------------------~~~d~~IyV~gad---q~~~~~ql~~~l~~~g~~~~~~----- 366 (577)
T COG0018 332 -------------------------------------RGFDKLIYVLGAD---QHGHFKQLKAVLELLGYGPDKE----- 366 (577)
T ss_pred -------------------------------------cCCCEEEEEeCCc---chhHHHHHHHHHHHhcCCCccc-----
Confidence 1223333333332 2358999999999999988752
Q ss_pred CCcccccccCCCCCcCCCCC-------CCchhHHHHHHh
Q psy6783 871 SQSEVEDRCCPSHAKTHRKP-------PFTYTELIEQAL 902 (1119)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~ 902 (1119)
.+.|..+|++....+++ .+++.|+++++.
T Consensus 367 ---~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~ 402 (577)
T COG0018 367 ---VLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAG 402 (577)
T ss_pred ---eEEEEEEeeeECCCCccccccCCceEEHHHHHHHHH
Confidence 27899999988754432 445555555543
No 16
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=4.1e-32 Score=329.78 Aligned_cols=258 Identities=26% Similarity=0.374 Sum_probs=207.7
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCC--CCCCCchhhHHHHHHHHhhhcCc
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY--LTKSPPIADLQAFYKESKKRFDE 633 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~--~~~~~~i~~L~~~Y~~~~~~~~~ 633 (1119)
.+|+||+ ||++|||+|+|++++.||+|+|.||+||||+|||+|++|+.+++++. ...+.|+.+|..+|+++++.+++
T Consensus 126 ~~hiGh~-r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 204 (566)
T TIGR00456 126 PLHIGHL-RNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYVEINKRLEE 204 (566)
T ss_pred CCchhhh-HHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHHHHHHHHHHhh
Confidence 6899998 99999999999999999999999999999999999999999887654 23456899999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc-c--ccchhhhhHHHHHHHHHhcCCeeeec
Q psy6783 634 DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-R--GESFYQKHMEQLVPYLEKKGNLSLTK 710 (1119)
Q Consensus 634 d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~-~--gES~y~~~~~~vi~~l~~~g~~~~~~ 710 (1119)
|+++.+++++++.+||.|||+.+.+|++++++|+++++++|++|||+||. . +||+|.++++++++.|+++|+++.+
T Consensus 205 ~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~- 283 (566)
T TIGR00456 205 NEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKEKGLVVED- 283 (566)
T ss_pred CccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHCCCEEEc-
Confidence 99999999999999999999999999999999999999999999999994 4 7888899999999999999999876
Q ss_pred CceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHHHHHHHHHHhc
Q psy6783 711 KLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDK 790 (1119)
Q Consensus 711 ~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~~~~~~~l~~~ 790 (1119)
|+.|+++++.++ ++ . .+|+ .++||++.|++.+|.+...|..+
T Consensus 284 Ga~~~~~~~~~d-----------------~~-~--------~~vl-------~ksDGt~~Y~t~DiA~~~~k~~~----- 325 (566)
T TIGR00456 284 GALWLDLTLFGD-----------------KD-K--------DRVL-------QKSDGTYLYLTRDIAYHLDKLER----- 325 (566)
T ss_pred CCEEEEcccccC-----------------CC-C--------CeEE-------EECCCCceechhhHHHHHHHHhc-----
Confidence 888877543321 10 0 1233 45799999999999988765311
Q ss_pred cCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCCCCCCCCCCCC
Q psy6783 791 NRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDP 870 (1119)
Q Consensus 791 ~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~~~~~~~~~~~ 870 (1119)
+ +|++++.-|+. ...||.|++.+++.+|++.+.
T Consensus 326 ~--------------------------------------~d~iI~V~g~~---q~~h~~~v~~~l~~lG~~~~~------ 358 (566)
T TIGR00456 326 G--------------------------------------FDKMIYVWGSD---HHLHIAQFFAILEKLGFYKKK------ 358 (566)
T ss_pred C--------------------------------------CCEEEEEecCc---HHHHHHHHHHHHHHcCCCCCC------
Confidence 1 12333322222 456999999999999985422
Q ss_pred CCcccccccCCCCCcC---CCCC-CCchhHHHHHHhh
Q psy6783 871 SQSEVEDRCCPSHAKT---HRKP-PFTYTELIEQALK 903 (1119)
Q Consensus 871 ~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~a~~ 903 (1119)
++.|+.||++... .+++ .+...|+++++.+
T Consensus 359 ---~l~h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ 392 (566)
T TIGR00456 359 ---ELIHLNFGMVPLGSMKTRRGNVISLDNLLDEASK 392 (566)
T ss_pred ---ceEEEEEEEEECCCCCccCCceeeHHHHHHHHHH
Confidence 4889999988653 2223 4455566666553
No 17
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=99.97 E-value=4.2e-31 Score=270.69 Aligned_cols=155 Identities=34% Similarity=0.563 Sum_probs=140.2
Q ss_pred HHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHH
Q psy6783 957 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAK 1036 (1119)
Q Consensus 957 ~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~ 1036 (1119)
.||.+|++|++|+++++++|+|||+++++++|||+||+||+|+|++||++|++..... ....+...+.++.|+.|+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~---~~~~~~~ll~~~~E~~L~~ 78 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEA---EADADLSLLPEPDERDLIL 78 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCcc---ccccchhhcCCHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998631110 0123345678899999999
Q ss_pred HHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccccccCCccchhhhHhHHHHHHHHHHHHHHHHhhhcCCCcC
Q psy6783 1037 TLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTV 1116 (1119)
Q Consensus 1037 ~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~VL~~~~~~~~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~ 1116 (1119)
.+..||++++.+++..+||.+|.||++||..||+||++|+|++++. +.+.+||.|+.++++++++||.||||+||
T Consensus 79 ~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~V~~~~~-----~i~~nRL~Ll~~v~~vl~~~l~llgi~~~ 153 (156)
T cd07956 79 LLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVLGAEE-----ELRNARLALVAAARQVLANGLDLLGIEAP 153 (156)
T ss_pred HHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcccCCCH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999997542 57999999999999999999999999999
Q ss_pred cCC
Q psy6783 1117 HKM 1119 (1119)
Q Consensus 1117 erM 1119 (1119)
++|
T Consensus 154 ~~m 156 (156)
T cd07956 154 ERM 156 (156)
T ss_pred ccC
Confidence 999
No 18
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=3e-25 Score=266.97 Aligned_cols=148 Identities=28% Similarity=0.429 Sum_probs=127.4
Q ss_pred chHHHHHHHHHHHHHHhccccCCCCcceeecccCCCCCCccccchhHHHHhHhhhccCCCCCHHHHHHHHHHhhhhcccc
Q psy6783 10 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELAT 89 (1119)
Q Consensus 10 ~~~~~l~~~~~~a~~~~~~~l~~~~~~~~~e~~p~~~~~Gd~atn~A~~LAk~~~~~~~~~~P~~iA~~i~~~~~~~l~~ 89 (1119)
++.+.|++.+..++.....+ .. +.+.++. |+++.||||+||+||.|||.+ |++|++||++|++.
T Consensus 4 ~~~~~i~~~~~~~~~~~~~~--~~-~~~~i~~-~~~~~~gd~~~~~a~~lak~~-----~~~p~~ia~~i~~~------- 67 (507)
T PRK01611 4 DIKELLAEALAAALEAGGLP--EL-PAVLIER-PKDPEHGDYATNVAMQLAKKL-----KKNPREIAEEIVEA------- 67 (507)
T ss_pred HHHHHHHHHHHHHHHhcccc--cc-ccceeec-CCCCCccCeecHHHHHHHHHc-----CCCHHHHHHHHHhh-------
Confidence 45666777777766553221 11 1345787 889999999999999999999 99999999999972
Q ss_pred CcccccchhhhcccCCceEEEEeCHHHHHHHHHHHHHcCCCCCC--CCCCceEEEEeeCCCccccCCcccCCCCchhhHH
Q psy6783 90 NPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPPT--LNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDI 167 (1119)
Q Consensus 90 ~~~~~~~i~~veiagpGfiN~~l~~~~~~~~~~~il~~g~~~g~--~~~~~~v~vE~vSANP~~~tg~l~~hig~~~r~~ 167 (1119)
|++|+++|||||||+|++.++.+.+.+++..+..||. ..++++|+|||+|||| +||+ ||| |+|++
T Consensus 68 -------i~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ie~~spnp---~g~l--HiG-H~R~~ 134 (507)
T PRK01611 68 -------IEKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKVVVEYVSANP---TGPL--HVG-HLRSA 134 (507)
T ss_pred -------eeEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCCCCEEEEEecCCCC---CCCC--cCC-chHHH
Confidence 6789999999999999999999999999988889995 3468899999999999 9999 999 99999
Q ss_pred HHHHHHHHHHHHcCCCCCc
Q psy6783 168 LISKAIAEEEKKQGISSSS 186 (1119)
Q Consensus 168 ~~gd~lar~~~~~G~~v~~ 186 (1119)
++||+|+|++++.||+|..
T Consensus 135 iigD~laR~lr~~G~~V~~ 153 (507)
T PRK01611 135 VIGDALARILEFAGYDVTR 153 (507)
T ss_pred HHHHHHHHHHHHcCCcEEE
Confidence 9999999999999999865
No 19
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=99.91 E-value=1.6e-24 Score=211.38 Aligned_cols=119 Identities=39% Similarity=0.616 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhh
Q psy6783 994 LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYD 1073 (1119)
Q Consensus 994 lQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~ 1073 (1119)
|||||||||||+||++....... ......+.+++|++|+..|.+||++++.|+++++||.+|+||++||..||+||+
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~---~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~ 77 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDE---YDDDFLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYD 77 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCC---HCCHHHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCcCCccc---cchhhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999975432110 001111578999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccchhhhHhHHHHHHHHHHHHHHHHhhhcCCCcCcCC
Q psy6783 1074 NCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119 (1119)
Q Consensus 1074 ~~~VL~~~~~~~~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~erM 1119 (1119)
+|+|++++.+ ..+.+||.|++++++||++||+||||+||++|
T Consensus 78 ~~~I~~~~~~----~~~~~RL~Ll~~v~~vl~~~l~llgi~~~~~M 119 (119)
T PF05746_consen 78 NVRILDEDEE----IRKNNRLALLKAVRQVLKNGLDLLGIEPLEKM 119 (119)
T ss_dssp HS-STTSTTC----HH-HHHHHHHHHHHHHHHHHHHHTT----S--
T ss_pred hccccccchH----HHHHHHHHHHHHHHHHHHHHHHHcCCCccccC
Confidence 9999987642 22499999999999999999999999999999
No 20
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.87 E-value=2.8e-21 Score=207.91 Aligned_cols=191 Identities=26% Similarity=0.359 Sum_probs=152.9
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
.+|+||+ ||+||||+|+|+++++||+|+++||+||||+|+++++.++.
T Consensus 14 ~~HiGH~-R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~------------------------------- 61 (212)
T cd00671 14 PLHVGHL-RNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE------------------------------- 61 (212)
T ss_pred Ccccccc-HHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-------------------------------
Confidence 6799998 99999999999999999999999999999999999876531
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccccc-ccccchhhhhHHHHHHHHHhcCCeeeecCceE
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT-ERGESFYQKHMEQLVPYLEKKGNLSLTKKLGI 714 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd-~~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~ 714 (1119)
.|+.+++.+++.|+++|++|||+|| +.+||+|.+.+.++++.|+++|.+..++|+.+
T Consensus 62 ----------------------~~~~~~~~~~~~~~~~~~~L~i~~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~ 119 (212)
T cd00671 62 ----------------------KWRKLVEESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLEELGLLYEEDGALW 119 (212)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHhCCcCceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEE
Confidence 1999999999999999999999999 58999999999999999999999999988876
Q ss_pred EEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHHHHHHHHHHhccCCC
Q psy6783 715 VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT 794 (1119)
Q Consensus 715 v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~~~~~~~l~~~~~~~ 794 (1119)
+.+... +- .++ +|+ .++||++.|...+|..+..+..
T Consensus 120 ~~~~~~----------------~~-~~d----------~vl-------~rsdG~~~Y~~~DlA~~~~~~~---------- 155 (212)
T cd00671 120 LDLTEF----------------GD-DKD----------RVL-------VRSDGTYTYFTRDIAYHLDKFE---------- 155 (212)
T ss_pred Eechhh----------------CC-CCC----------eEE-------EECCCCccchHHHHHHHHHHHh----------
Confidence 654211 10 111 232 5579999999999988776531
Q ss_pred CCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCCCCCCCCCCCCCCcc
Q psy6783 795 ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874 (1119)
Q Consensus 795 ~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~~~~~~~~~~~~~~~ 874 (1119)
+.++++++..|+. ...|+.|++.|++.+|+.. .+ +
T Consensus 156 ---------------------------------~~~~~~i~v~g~~---~~~~~~~~~~~~~~lg~~~-~~--------~ 190 (212)
T cd00671 156 ---------------------------------RGADKIIYVVGAD---HHGHFKRLFAALELLGYDE-AK--------K 190 (212)
T ss_pred ---------------------------------cCCCEEEEEECCC---HHHHHHHHHHHHHHcCCCC-CC--------C
Confidence 1234444444443 5679999999999999862 11 3
Q ss_pred cccccCCCCCcCCCC
Q psy6783 875 VEDRCCPSHAKTHRK 889 (1119)
Q Consensus 875 ~~~~~~~~~~~~~~~ 889 (1119)
+.|..||++....++
T Consensus 191 ~~h~~~~~v~~~~~~ 205 (212)
T cd00671 191 LEHLLYGMVNLPKEG 205 (212)
T ss_pred eEEEEEEeEEcCCCC
Confidence 788888888877554
No 21
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=99.87 E-value=6.6e-22 Score=194.13 Aligned_cols=122 Identities=32% Similarity=0.512 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhh
Q psy6783 994 LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYD 1073 (1119)
Q Consensus 994 lQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~ 1073 (1119)
+||+|+|++||++|++.....+++....+...+.++.||.|+..+..||++++.++.+.+||.+|+|+++||..||+||+
T Consensus 1 iqY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~ 80 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYN 80 (122)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHc
Confidence 59999999999999863211222111233445778999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccchhhhHhHHHHHHHHHHHHHHHHhhhcCCCcCcCC
Q psy6783 1074 NCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119 (1119)
Q Consensus 1074 ~~~VL~~~~~~~~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~erM 1119 (1119)
+|+|+++++ .+++.+||+|+.++++++.+++.||||+||++|
T Consensus 81 ~v~V~~~~~----~~~~~~RL~Ll~~~~~~l~~~~~llgi~~~~~m 122 (122)
T smart00836 81 KCRVLGEEN----PELRAARLALLKAVRQVLANGLRLLGISAPERM 122 (122)
T ss_pred cCcccCCCC----HHHHHHHHHHHHHHHHHHHHHHHHcCCCccccC
Confidence 999998652 257899999999999999999999999999999
No 22
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.78 E-value=3.3e-17 Score=201.21 Aligned_cols=132 Identities=12% Similarity=0.185 Sum_probs=108.4
Q ss_pred hhhhhhcccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhh
Q psy6783 962 CIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRM 1041 (1119)
Q Consensus 962 ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~f 1041 (1119)
+++|.+|+....++++|+++.+.+..+...+|.+| ++|+++++++.... ....+ .+.|..|+..|..+
T Consensus 337 aLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l~n~-~~rl~s~l~~~~~~----------~~~~~-~~~d~~Ll~~l~~~ 404 (651)
T PTZ00399 337 QIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNF-FANVKIKLRESELT----------SPQKW-TQHDFELNELFEET 404 (651)
T ss_pred HHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccc----------ccccC-CHHHHHHHHHHHHH
Confidence 46777788888889999999888777667789999 99999999864311 00112 46678899999999
Q ss_pred HHHHHHHH-HhcchHHHHHHHHHHHHHHHhhhhcccccccCCccchhhhHhHHHHHHHHHHHHHHHHhhhcCCCcCcCC
Q psy6783 1042 NDVLMLVT-RDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119 (1119)
Q Consensus 1042 pevl~~Aa-~~l~P~~L~~YL~~LA~~F~~FY~~~~VL~~~~~~~~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~erM 1119 (1119)
++.+..|. .++.|+..+.+|++|+..+|.||+. + ...|+.|+.+++.+|.++|.+|||.++++|
T Consensus 405 ~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~yi~~------~--------~~~~~~ll~~v~~~l~~~l~ILGl~~~~~m 469 (651)
T PTZ00399 405 KSAVHAALLDNFDTPEALQALQKLISATNTYLNS------G--------EQPSAPLLRSVAQYVTKILSIFGLVEGSDG 469 (651)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc------c--------ccchHHHHHHHHHHHHHHHhcccCCcchhh
Confidence 99999998 6799999999999999999999962 1 246788999999999999999999988765
No 23
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.72 E-value=7.3e-15 Score=178.60 Aligned_cols=116 Identities=16% Similarity=0.290 Sum_probs=93.2
Q ss_pred EEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHHHH
Q psy6783 337 LVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416 (1119)
Q Consensus 337 ~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~y~ 416 (1119)
+|--.-|||+|++||||+|+.++.|+|+|.++..|++|.-..-+.|.|..+-.-+.. ++
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~----------~g----------- 60 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ----------EG----------- 60 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH----------cC-----------
Confidence 455667999999999999999999999999999999999999999999876332210 00
Q ss_pred HhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc---hhhhhHHHHHHHHHHHH
Q psy6783 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVPYLEK 493 (1119)
Q Consensus 417 ~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g---eS~y~~~v~~vi~~L~~ 493 (1119)
-+ ++++++.+.+.|++.+.+|||.++... ++.|.+.+.+++++|.+
T Consensus 61 -------------------------~~------~~e~~~~~~~~~~~~l~~LgI~~D~~~~t~~~~~~~~v~~~~~~L~~ 109 (530)
T TIGR00398 61 -------------------------LT------PKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKE 109 (530)
T ss_pred -------------------------CC------HHHHHHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHH
Confidence 01 234667778889999999999887532 45577889999999999
Q ss_pred CCCeEeeCCCe
Q psy6783 494 KGLLELDDGRK 504 (1119)
Q Consensus 494 kG~~~e~dGA~ 504 (1119)
+|++|++++..
T Consensus 110 kG~iY~~~~~v 120 (530)
T TIGR00398 110 NGYIYEKEIKQ 120 (530)
T ss_pred CCCEEEeeeEE
Confidence 99999987653
No 24
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.69 E-value=3.3e-14 Score=172.11 Aligned_cols=107 Identities=17% Similarity=0.133 Sum_probs=81.5
Q ss_pred hhhhhhcccCC-CCCcccchhhhcc-ccCCchhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHH
Q psy6783 962 CIKYADLSHNR-NLDYVFSFDKMLD-DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLL 1039 (1119)
Q Consensus 962 ai~~~~L~~~r-~~~~~Fd~d~~l~-~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~ 1039 (1119)
|++|.+++..+ .++++|+++.+.+ .+++.+.+++|.++|+.+++++..... .+ ....+ .+.+..|+..|.
T Consensus 321 alR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~--~~-----~~~~~-~~~d~~l~~~l~ 392 (511)
T PRK11893 321 AVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGK--VP-----EPGAL-TEADEALLEAAA 392 (511)
T ss_pred HHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CC-----CCccc-chhhHHHHHHHH
Confidence 45566666533 6788899888754 356778899999999999998863210 10 00112 345567888899
Q ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhccc
Q psy6783 1040 RMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1076 (1119)
Q Consensus 1040 ~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~ 1076 (1119)
++++.+..+.++++|+.++++++++++.+|.|++.++
T Consensus 393 ~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~ 429 (511)
T PRK11893 393 ALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQA 429 (511)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999998764
No 25
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.65 E-value=1.1e-13 Score=172.61 Aligned_cols=119 Identities=17% Similarity=0.261 Sum_probs=94.0
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 413 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~ 413 (1119)
++++|.-.=|+|+|++||||+|+.++.|+++|.++..||+|.-..-..|.|..+-.-+.. .+.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~----------~g~------- 64 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK----------EGI------- 64 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH----------cCC-------
Confidence 467888888999999999999999999999999999999999999999999877553321 001
Q ss_pred HHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc---hhhhhHHHHHHHHH
Q psy6783 414 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVPY 490 (1119)
Q Consensus 414 ~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g---eS~y~~~v~~vi~~ 490 (1119)
++ +.+++...+.|.+.+..|||.++.+. +..|...+.+++++
T Consensus 65 -----------------------------~p------~e~~~~~~~~~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~~~~ 109 (673)
T PRK00133 65 -----------------------------TP------EELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLK 109 (673)
T ss_pred -----------------------------CH------HHHHHHHHHHHHHHHHHhCCCCCCCccCCcHHHHHHHHHHHHH
Confidence 11 12445566678888999999876532 23466889999999
Q ss_pred HHHCCCeEeeCCCe
Q psy6783 491 LEKKGLLELDDGRK 504 (1119)
Q Consensus 491 L~~kG~~~e~dGA~ 504 (1119)
|.++|++|+.++..
T Consensus 110 L~~~G~iy~~~~~~ 123 (673)
T PRK00133 110 LKENGYIYEKTIEQ 123 (673)
T ss_pred HHHCCCEEEeeeEE
Confidence 99999999987654
No 26
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=99.64 E-value=1.9e-16 Score=146.39 Aligned_cols=84 Identities=39% Similarity=0.606 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhccccCCCCcceeecccCCCCCCccccchhHHHHhHhhhccCCCCCHHHHHHHHHHhhhhccccCccc
Q psy6783 14 YLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSL 93 (1119)
Q Consensus 14 ~l~~~~~~a~~~~~~~l~~~~~~~~~e~~p~~~~~Gd~atn~A~~LAk~~~~~~~~~~P~~iA~~i~~~~~~~l~~~~~~ 93 (1119)
+|.+.|.+|+..+... ......+.++. |+++.||||+||+||.|||.+ |+||++||+.|++ .|..++
T Consensus 2 ~l~~~i~~~l~~~~~~-~~~~~~~~i~~-~~~~~~GD~~~n~a~~lak~~-----k~~P~~iA~~i~~----~l~~~~-- 68 (85)
T PF03485_consen 2 QLKKAISEALKKAFGI-DLEEIEIQIEK-PPNPKFGDYQTNIAFRLAKKL-----KKNPREIAEEIAE----KLEKSP-- 68 (85)
T ss_dssp HHHHHHHHHHHHCHST-TCCCHGGGEEE--SSGGG-SEEEEHHHHHHHHT-----TS-HHHHHHHHHH----CHCTTT--
T ss_pred hHHHHHHHHHHHHhcc-cccccceEEEc-CCCCCceeeeccchHHHHHHc-----CCCHHHHHHHHHH----hcCCCC--
Confidence 5778888888887421 11234667887 899999999999999999999 9999999999998 476653
Q ss_pred ccchhhhcccCCceEEEEe
Q psy6783 94 AKVIDKIEAAKPGFVNVFL 112 (1119)
Q Consensus 94 ~~~i~~veiagpGfiN~~l 112 (1119)
.|++||++|||||||+|
T Consensus 69 --~i~~vev~gpGFiN~~L 85 (85)
T PF03485_consen 69 --IIEKVEVAGPGFINFFL 85 (85)
T ss_dssp --TEEEEEEETTTEEEEEE
T ss_pred --CEEEEEEcCCcEEEEeC
Confidence 49999999999999997
No 27
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.62 E-value=1.7e-15 Score=153.17 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=52.3
Q ss_pred EEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHH
Q psy6783 338 VDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIA 392 (1119)
Q Consensus 338 VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~ 392 (1119)
|++++|||+|++||||+|+++++|+++|.|+..||+|...++++|||.|++..+.
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~ 55 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPAN 55 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999987653
No 28
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=99.62 E-value=1.1e-15 Score=141.36 Aligned_cols=83 Identities=41% Similarity=0.657 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhc-CcCCCCcceEeecCcccccCCccchhchHHHHHHHhhccCCCCCHHHHHHHHHHhhcccccCCcc
Q psy6783 210 YLSDVFTHAVQVAF-PELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 288 (1119)
Q Consensus 210 ~l~~~i~~al~~~~-~~~~~~~~~ve~p~~~~~~~~GD~atn~Am~lAK~~k~~~~~~~P~~IA~~i~~~l~~~l~~~~~ 288 (1119)
.|++.|.++|.+++ .......+.|+.|+++ ++||||||+||.+||.+| ++|++||++|++. |..+
T Consensus 2 ~l~~~i~~~l~~~~~~~~~~~~~~i~~~~~~---~~GD~~~n~a~~lak~~k-----~~P~~iA~~i~~~----l~~~-- 67 (85)
T PF03485_consen 2 QLKKAISEALKKAFGIDLEEIEIQIEKPPNP---KFGDYQTNIAFRLAKKLK-----KNPREIAEEIAEK----LEKS-- 67 (85)
T ss_dssp HHHHHHHHHHHHCHSTTCCCHGGGEEE-SSG---GG-SEEEEHHHHHHHHTT-----S-HHHHHHHHHHC----HCTT--
T ss_pred hHHHHHHHHHHHHhcccccccceEEEcCCCC---CceeeeccchHHHHHHcC-----CCHHHHHHHHHHh----cCCC--
Confidence 56777777877774 2223345778988888 999999999999999997 8999999999999 6655
Q ss_pred cccceeeEEEeCCeEEEEEe
Q psy6783 289 LAKVIDKIEVAKPGFVNVFL 308 (1119)
Q Consensus 289 ~~~~ie~vevagpGFINf~L 308 (1119)
+.|++|||+|||||||+|
T Consensus 68 --~~i~~vev~gpGFiN~~L 85 (85)
T PF03485_consen 68 --PIIEKVEVAGPGFINFFL 85 (85)
T ss_dssp --TTEEEEEEETTTEEEEEE
T ss_pred --CCEEEEEEcCCcEEEEeC
Confidence 569999999999999997
No 29
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.58 E-value=1.9e-12 Score=158.52 Aligned_cols=119 Identities=14% Similarity=0.273 Sum_probs=93.1
Q ss_pred cEEEEEeeCCCCCCCccccccchh-cHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRST-IIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsa-iiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
++++|.-.-|+|+|++||||+|+. ++.|+++|.++..|++|.....+.|.|..+-.-+.. .+.+.
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~----------~g~~~---- 68 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK----------EGVTP---- 68 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHH----------cCCCH----
Confidence 468899999999999999999999 999999999999999999999999999877543321 01111
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc---hhhhhHHHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVP 489 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g---eS~y~~~v~~vi~ 489 (1119)
+.+++...+.|.+.+.+|||.++... ...|...+.++++
T Consensus 69 --------------------------------------~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~ 110 (556)
T PRK12268 69 --------------------------------------QELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFL 110 (556)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHcCCcCCCCcCCCCHHHHHHHHHHHH
Confidence 12344455668888899999876422 1245678999999
Q ss_pred HHHHCCCeEeeCCCe
Q psy6783 490 YLEKKGLLELDDGRK 504 (1119)
Q Consensus 490 ~L~~kG~~~e~dGA~ 504 (1119)
+|.++|++|+.++..
T Consensus 111 ~L~~~G~~y~~~~~~ 125 (556)
T PRK12268 111 KLYENGYIYKKTIEQ 125 (556)
T ss_pred HHHHCCCeEEeeeEE
Confidence 999999999987664
No 30
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.51 E-value=1.1e-11 Score=148.17 Aligned_cols=124 Identities=21% Similarity=0.219 Sum_probs=99.6
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+.+|-+-.|+|+|.+++||||+|+.++.|+|+|.|+..||+|.-..-+.|.|..+-.-+.
T Consensus 21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~-------------------- 80 (463)
T PRK00260 21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRAN-------------------- 80 (463)
T ss_pred CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHH--------------------
Confidence 456889999999999999999999999999999999999999999999998765532111
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEE-ecc-chhhhhHHHHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL-TER-GESFYQKHMEQLVPY 490 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f-~~~-geS~y~~~v~~vi~~ 490 (1119)
+.|. .|+.+++...+.|.+.+.+|||.+ +.+ ..+.+.+.+.+++++
T Consensus 81 ---------------------------~~g~-----~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~ 128 (463)
T PRK00260 81 ---------------------------EEGE-----SIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIER 128 (463)
T ss_pred ---------------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHH
Confidence 0111 256677778888999999999943 432 345677889999999
Q ss_pred HHHCCCeEeeCCCeEEEc
Q psy6783 491 LEKKGLLELDDGRKIMWG 508 (1119)
Q Consensus 491 L~~kG~~~e~dGA~~~~~ 508 (1119)
|.++|++|+.+|.+....
T Consensus 129 L~~kG~aY~~~~~Vyfdv 146 (463)
T PRK00260 129 LIDKGHAYEADGDVYFDV 146 (463)
T ss_pred HHHCCCEEEecCeEEEec
Confidence 999999999999865443
No 31
>PLN02946 cysteine-tRNA ligase
Probab=99.46 E-value=3e-11 Score=145.39 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=97.2
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 411 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l 411 (1119)
.+.+|-+=.|.|.+-++.||||+|+.|..|+|+|.|+..||+|.-+.-+.|.|..|-.-+.. .+.+
T Consensus 77 ~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~----------~g~~---- 142 (557)
T PLN02946 77 VEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANE----------LGED---- 142 (557)
T ss_pred CCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHH----------cCCC----
Confidence 35579999999999999999999999999999999999999999999999988766332210 1111
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEE--eccchhhhhHHHHHHHH
Q psy6783 412 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL--TERGESFYQKHMEQLVP 489 (1119)
Q Consensus 412 ~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f--~~~geS~y~~~v~~vi~ 489 (1119)
|+.+++...+.|.+.+..|||.. ..--.+.+.+.+.++++
T Consensus 143 --------------------------------------~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~ 184 (557)
T PLN02946 143 --------------------------------------PISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIK 184 (557)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHH
Confidence 23445556667888899999862 22234667788999999
Q ss_pred HHHHCCCeEeeCCCeEEE
Q psy6783 490 YLEKKGLLELDDGRKIMW 507 (1119)
Q Consensus 490 ~L~~kG~~~e~dGA~~~~ 507 (1119)
.|.++|++|+.+|..+..
T Consensus 185 ~Li~kG~aY~~~g~VYFd 202 (557)
T PLN02946 185 QILDNGCAYRVDGDVYFS 202 (557)
T ss_pred HHHHCCCEEEECCeEEEe
Confidence 999999999999976543
No 32
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.40 E-value=8.4e-13 Score=157.52 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=59.7
Q ss_pred HHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHH-HHHHHHHHH-hccCCCCCChhhhHHHHHHhhhc
Q psy6783 734 KKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEG-LRRSLDKLK-DKNRHTELTPTELSEAQQAVAYG 811 (1119)
Q Consensus 734 ~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~-~~~~~~~l~-~~~~~~~~~~~~~~~~a~~v~~g 811 (1119)
+.+|+..| ++.|+++ +++.+|++||+|+| .+.++++++++ .-++...+. ..+-......+.... -+
T Consensus 219 ~aLg~~~p---~~~H~p~--l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~~~------~~ 286 (470)
T TIGR00464 219 QALGWKIP---VFAHLPM--ILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSL------EE 286 (470)
T ss_pred HHcCCCCC---eEEEEee--eecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccCCH------HH
Confidence 34465333 7899986 56678899999999 88999999886 344433332 222111000111000 16
Q ss_pred eeeeecccCCCCCcccccccccccccC
Q psy6783 812 CIKYADLSHNRNLDYVFSFDKMLDDRG 838 (1119)
Q Consensus 812 aI~~~dl~~~r~~~y~F~~~~~~~~~g 838 (1119)
+|.+++++..+..+++|||+++..+++
T Consensus 287 ~i~~f~l~~~~~~~~~fd~~kL~~~N~ 313 (470)
T TIGR00464 287 LIEIFSLNRVSKSPAKFDWKKLQWLNA 313 (470)
T ss_pred HHHhcCcccCCCCCCeecHHHHHHHHH
Confidence 788899999999999999999544433
No 33
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.31 E-value=4.4e-12 Score=151.57 Aligned_cols=93 Identities=23% Similarity=0.243 Sum_probs=60.2
Q ss_pred HHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHH-HHHHHHH-HHhccCCCCCChhhhHHHHHHhhhc
Q psy6783 734 KKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEG-LRRSLDK-LKDKNRHTELTPTELSEAQQAVAYG 811 (1119)
Q Consensus 734 ~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~-~~~~~~~-l~~~~~~~~~~~~~~~~~a~~v~~g 811 (1119)
+.+|+..| ++.|+++ +++.+|.+||+|+| .+.++++++++ .-.|+.. +...+-.. ..++.... -.
T Consensus 229 ~alG~~~p---~~~H~pl--i~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~lG~s~--~~~e~~~~-----~~ 295 (476)
T PRK01406 229 EALGWEVP---VFAHLPL--ILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALLGWSH--GDQEIFSL-----EE 295 (476)
T ss_pred HHhCCCCC---eEEEeee--eeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHhCCCC--CccccCCH-----HH
Confidence 34465333 7899876 66788899999999 78899988876 3333333 32222111 11111000 15
Q ss_pred eeeeecccCCCCCcccccccccccccCC
Q psy6783 812 CIKYADLSHNRNLDYVFSFDKMLDDRGN 839 (1119)
Q Consensus 812 aI~~~dl~~~r~~~y~F~~~~~~~~~g~ 839 (1119)
+|.+++++.-+..++.|||+++..+++.
T Consensus 296 ~i~~f~l~~~~~s~~~fd~~kL~~~N~~ 323 (476)
T PRK01406 296 LIELFDLERVSKSPARFDIKKLDWLNGH 323 (476)
T ss_pred HHHhcChhhCCCCCccccHHHHHHHHHH
Confidence 7888999999999999999998765444
No 34
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.29 E-value=5.5e-11 Score=135.67 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=90.7
Q ss_pred EEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHH
Q psy6783 335 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 414 (1119)
Q Consensus 335 kV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~ 414 (1119)
|++|-..=|+|+|++||||+|+.+++|+++|.++..||+|.-...+.|+|..+-..+... +.
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~----------g~-------- 62 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI----------GR-------- 62 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc----------CC--------
Confidence 467888889999999999999999999999999999999999999999998864432210 00
Q ss_pred HHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEecc-----chhhhhHHHHHHHH
Q psy6783 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GESFYQKHMEQLVP 489 (1119)
Q Consensus 415 y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~-----geS~y~~~v~~vi~ 489 (1119)
+ ++++++...+.+.+.+.+||++++.. ....+...++.++.
T Consensus 63 ----------------------------~------~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~ 108 (314)
T cd00812 63 ----------------------------D------PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFL 108 (314)
T ss_pred ----------------------------C------HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHH
Confidence 0 12344555667888899999987631 12334567888899
Q ss_pred HHHHCCCeEeeCCC
Q psy6783 490 YLEKKGLLELDDGR 503 (1119)
Q Consensus 490 ~L~~kG~~~e~dGA 503 (1119)
.|.++|++|+.++.
T Consensus 109 ~L~~~G~iy~~~~~ 122 (314)
T cd00812 109 KLYEKGLAYKKEAP 122 (314)
T ss_pred HHHHCCCEEecCce
Confidence 99999999988765
No 35
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.27 E-value=1.7e-10 Score=138.13 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=100.8
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+.+|-+=.|+|-|.+++||||+|+.+..|+++|.|+..||+|.-+.-+.|.|..+-.-+..
T Consensus 19 ~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~------------------- 79 (465)
T TIGR00435 19 QGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARE------------------- 79 (465)
T ss_pred CCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHH-------------------
Confidence 4578899999999999999999999999999999999999999999999988755321110
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec--cchhhhhHHHHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPY 490 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~--~geS~y~~~v~~vi~~ 490 (1119)
.|- -|+.+++.+.+.|.+.++.|||.++. ...|.|.+.+.+++++
T Consensus 80 ----------------------------~g~-----~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~ 126 (465)
T TIGR00435 80 ----------------------------NGE-----SVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQ 126 (465)
T ss_pred ----------------------------cCC-----CHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHHHH
Confidence 010 02345666778899999999998764 2567788899999999
Q ss_pred HHHCCCeEeeC-CCeEEEc
Q psy6783 491 LEKKGLLELDD-GRKIMWG 508 (1119)
Q Consensus 491 L~~kG~~~e~d-GA~~~~~ 508 (1119)
|.++|++|+++ |+.+...
T Consensus 127 L~ekG~aY~~~~g~vyfdv 145 (465)
T TIGR00435 127 LIEKGYAYVSDNGDVYFDV 145 (465)
T ss_pred HHHCCCEEEecCCcEEEec
Confidence 99999999998 9876554
No 36
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.27 E-value=2.1e-09 Score=134.04 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=92.8
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 413 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~ 413 (1119)
++++|--.=|+|+|++||||+|+.++.|+++|.++..||+|.-...+.|+|..+-.-+.. .+.
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~----------~g~------- 66 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK----------AGK------- 66 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHH----------cCC-------
Confidence 468888889999999999999999999999999999999999999999999976432210 000
Q ss_pred HHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc---hhhhhHHHHHHHHH
Q psy6783 414 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVPY 490 (1119)
Q Consensus 414 ~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g---eS~y~~~v~~vi~~ 490 (1119)
+ .+.+++.+.+.|++.+.+|||+||.+. +..+...++++++.
T Consensus 67 -----------------------------~------~~e~~d~~~~~fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~ 111 (648)
T PRK12267 67 -----------------------------T------PQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEK 111 (648)
T ss_pred -----------------------------C------HHHHHHHHHHHHHHHHHHcCCCCCCCeeCCCHHHHHHHHHHHHH
Confidence 1 123556677889999999999887532 22345789999999
Q ss_pred HHHCCCeEeeC
Q psy6783 491 LEKKGLLELDD 501 (1119)
Q Consensus 491 L~~kG~~~e~d 501 (1119)
|.++|++|+.+
T Consensus 112 L~~kG~IY~~~ 122 (648)
T PRK12267 112 LYEQGDIYKGE 122 (648)
T ss_pred HHHCCCEEEee
Confidence 99999999763
No 37
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.26 E-value=7.5e-11 Score=134.43 Aligned_cols=129 Identities=21% Similarity=0.216 Sum_probs=95.9
Q ss_pred EEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHHH
Q psy6783 336 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415 (1119)
Q Consensus 336 V~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~y 415 (1119)
.+|--.-|+|+|++||||+|+.++.|+++|.++..||+|....-+.|.|..+-.-+... ... .....+
T Consensus 2 ~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~---~~~-~~~~~~-------- 69 (312)
T cd00668 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK---GGR-KKKTIW-------- 69 (312)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHh---cCc-cccccc--------
Confidence 57788899999999999999999999999999999999999999999998775543321 000 000000
Q ss_pred HHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec-----cchhhhhHHHHHHHHH
Q psy6783 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-----RGESFYQKHMEQLVPY 490 (1119)
Q Consensus 416 ~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~-----~geS~y~~~v~~vi~~ 490 (1119)
.++| .+.++.+++...+.+.+.+.+|||++++ .-+..|.+.+.+++++
T Consensus 70 ---------~~~~------------------~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~ 122 (312)
T cd00668 70 ---------IEEF------------------REDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSR 122 (312)
T ss_pred ---------HHHH------------------HHHHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHH
Confidence 0112 2234456667778899999999998872 1123556789999999
Q ss_pred HHHCCCeEeeCCC
Q psy6783 491 LEKKGLLELDDGR 503 (1119)
Q Consensus 491 L~~kG~~~e~dGA 503 (1119)
|.++|++|+.++-
T Consensus 123 L~~~G~iY~~~~~ 135 (312)
T cd00668 123 LYEKGLIYRGTHP 135 (312)
T ss_pred HHHCCCEEeecce
Confidence 9999999997653
No 38
>PLN02224 methionine-tRNA ligase
Probab=99.23 E-value=3.9e-09 Score=129.77 Aligned_cols=120 Identities=14% Similarity=0.251 Sum_probs=94.4
Q ss_pred CCCCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChH
Q psy6783 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIA 409 (1119)
Q Consensus 330 ~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~ 409 (1119)
.+++++++|--.=|+|+|++||||+|+.+++|+++|.++..||+|.....++|+|.+|..-+.. .+...
T Consensus 65 ~~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~----------~g~~p- 133 (616)
T PLN02224 65 VDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAA----------NGRNP- 133 (616)
T ss_pred CCCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHH----------cCCCh-
Confidence 3567889999989999999999999999999999999999999999999999999988654321 01111
Q ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc---hhhhhHHHHH
Q psy6783 410 DLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQ 486 (1119)
Q Consensus 410 ~l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g---eS~y~~~v~~ 486 (1119)
.++|+.....|.+.+.+|||+++.+. +..|...+++
T Consensus 134 -----------------------------------------~e~~~~~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~ 172 (616)
T PLN02224 134 -----------------------------------------PEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKE 172 (616)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHH
Confidence 12334444567888899999876432 3345678999
Q ss_pred HHHHHHHCCCeEeeC
Q psy6783 487 LVPYLEKKGLLELDD 501 (1119)
Q Consensus 487 vi~~L~~kG~~~e~d 501 (1119)
++.+|.++|++|+.+
T Consensus 173 ~f~~L~~~G~Iy~~~ 187 (616)
T PLN02224 173 FYARVFANGDIYRAD 187 (616)
T ss_pred HHHHHHHCCCEEEee
Confidence 999999999999864
No 39
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.06 E-value=2.9e-07 Score=119.66 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=95.9
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+++..+-..-||+||.+|+||+++.+|.|+++|..+-.||+|.+..-..-+|..+-..+... ..- .....+.++
T Consensus 40 ~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~---l~~--~~~~~i~~~- 113 (975)
T PRK06039 40 GPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKE---LGI--SGKKDIEEY- 113 (975)
T ss_pred CCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHH---hCc--ccccchhhc-
Confidence 45688888999999999999999999999999999999999999999999999987654321 100 000111111
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~v 487 (1119)
..++|.++++++ .....+.+.+.+.+||+++|+.. .-.|...+..+
T Consensus 114 -----------g~~~f~~~c~~~------------------~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~ 164 (975)
T PRK06039 114 -----------GIEKFNEKCRES------------------VLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWA 164 (975)
T ss_pred -----------CHHHHHHHHHHH------------------HHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHH
Confidence 123455555433 33445567777999999987532 23445679999
Q ss_pred HHHHHHCCCeEe
Q psy6783 488 VPYLEKKGLLEL 499 (1119)
Q Consensus 488 i~~L~~kG~~~e 499 (1119)
+.+|-++|++|.
T Consensus 165 F~~l~~kGliyr 176 (975)
T PRK06039 165 LKQLYDKGLLYK 176 (975)
T ss_pred HHHHHHCCCEEe
Confidence 999999999996
No 40
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.03 E-value=6.9e-09 Score=119.61 Aligned_cols=51 Identities=24% Similarity=0.396 Sum_probs=46.2
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchh
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~ 385 (1119)
.+++|+-.=+ |+|+.||||+|..+.+|+++|.++..|++|.-++...|++.
T Consensus 19 ~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~ 69 (353)
T cd00674 19 EKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDR 69 (353)
T ss_pred CeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCc
Confidence 4677775554 99999999999999999999999999999999999999975
No 41
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.02 E-value=1.3e-09 Score=130.09 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=31.7
Q ss_pred CeEEEecCCCcccchhhHHHHHHHhhhhCCCEEEEEeecCcccchh
Q psy6783 515 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFR 560 (1119)
Q Consensus 515 ~~VL~KSDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~ 560 (1119)
+.||+||||+|||.++ ++.+++. .+++++| .|.+|..|..
T Consensus 172 D~Vi~RsDG~ptY~~a---~vVDD~~-m~ithVI--RG~d~~~~t~ 211 (513)
T PRK14895 172 DMVLLRADGTATYMLA---VVVDDHD-MGITHII--RGDDHLTNAA 211 (513)
T ss_pred CcEEEEeCCCcchhhH---HHHHHHh-cCCCEEE--ECchHhhhHH
Confidence 5899999999999887 6778774 4899999 7876654443
No 42
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=98.88 E-value=5.4e-09 Score=119.72 Aligned_cols=115 Identities=19% Similarity=0.318 Sum_probs=93.4
Q ss_pred EEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHHH
Q psy6783 336 VLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 415 (1119)
Q Consensus 336 V~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~y 415 (1119)
++|--.-|+|+|++||||+|+.++.|+++|.++..||+|.-..-+.|.|..+-.-+.. .
T Consensus 2 ~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~----------~----------- 60 (319)
T cd00814 2 VLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE----------E----------- 60 (319)
T ss_pred EEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH----------c-----------
Confidence 5677788999999999999999999999999999999999999999999877543211 0
Q ss_pred HHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEecc---chhhhhHHHHHHHHHHH
Q psy6783 416 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVPYLE 492 (1119)
Q Consensus 416 ~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~---geS~y~~~v~~vi~~L~ 492 (1119)
.-+ ++++++.+.+.+++.+.+|||.|+.. .++.+.+.+.+++++|.
T Consensus 61 -------------------------g~~------~~e~~~~~~~~~~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ 109 (319)
T cd00814 61 -------------------------GVT------PQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLY 109 (319)
T ss_pred -------------------------CCC------HHHHHHHHHHHHHHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHHHH
Confidence 001 23566778889999999999998742 34456688999999999
Q ss_pred HCCCeEeeCC
Q psy6783 493 KKGLLELDDG 502 (1119)
Q Consensus 493 ~kG~~~e~dG 502 (1119)
++|++|+.+.
T Consensus 110 ekG~iY~~~~ 119 (319)
T cd00814 110 ENGYIYEGEY 119 (319)
T ss_pred HCCCEEeeee
Confidence 9999997653
No 43
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.86 E-value=2.3e-08 Score=119.54 Aligned_cols=133 Identities=21% Similarity=0.233 Sum_probs=100.6
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 411 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l 411 (1119)
.+.+|-+=.|.|.+.++.||||+|+.|.-|+|+|.|+..||+|.-+.-|-|.|...+- ..
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~------------~D-------- 79 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDD------------AD-------- 79 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccC------------Cc--------
Confidence 3457999999999999999999999999999999999999999999999998732210 00
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec--cchhhhhHHHHHHHH
Q psy6783 412 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVP 489 (1119)
Q Consensus 412 ~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~--~geS~y~~~v~~vi~ 489 (1119)
+-++.+.+.|. +.|-. |+.+++...+.|.+.+..|||.+.. .-.+.+.+.+.++++
T Consensus 80 -----------e~ddKii~~A~------~~g~~-----~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~ 137 (490)
T PRK14536 80 -----------SGEDKMVKSAQ------EHGKS-----VLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIK 137 (490)
T ss_pred -----------CCChHHHHHHH------HcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHH
Confidence 01222222332 12211 4567778888899999999997632 124666788999999
Q ss_pred HHHHCCCeEeeCCCeEE
Q psy6783 490 YLEKKGLLELDDGRKIM 506 (1119)
Q Consensus 490 ~L~~kG~~~e~dGA~~~ 506 (1119)
.|.++|++|+.+|..+.
T Consensus 138 ~L~~kG~aY~~~~~vyF 154 (490)
T PRK14536 138 RLEARGHTYCAGGNVYF 154 (490)
T ss_pred HHHHCCCEEEECCeEEE
Confidence 99999999999997553
No 44
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.76 E-value=4.6e-08 Score=112.95 Aligned_cols=134 Identities=16% Similarity=0.107 Sum_probs=98.3
Q ss_pred EEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHH
Q psy6783 335 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 414 (1119)
Q Consensus 335 kV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~ 414 (1119)
+..|--.-|+|+|++||||+|+.++.|+++|.++..||+|.-..-+.|+|..+..-+... .... ....+.++
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~---lg~~--~~~~~~~~--- 73 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKE---LGIS--GKKDIEKM--- 73 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHH---hCCC--CCcchhhc---
Confidence 356667789999999999999999999999999999999999999999999986544321 0100 00000000
Q ss_pred HHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec-----cchhhhhHHHHHHHH
Q psy6783 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-----RGESFYQKHMEQLVP 489 (1119)
Q Consensus 415 y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~-----~geS~y~~~v~~vi~ 489 (1119)
..++ ....++++++...+.+.+.+.+||++++. .-...|...+.++++
T Consensus 74 ---------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~ 126 (338)
T cd00818 74 ---------GIAE------------------FNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFK 126 (338)
T ss_pred ---------CHHH------------------HHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHH
Confidence 0011 12235567777888999999999997652 123466788999999
Q ss_pred HHHHCCCeEeeCCC
Q psy6783 490 YLEKKGLLELDDGR 503 (1119)
Q Consensus 490 ~L~~kG~~~e~dGA 503 (1119)
+|.++|++|+.++-
T Consensus 127 ~L~~~G~iY~~~~~ 140 (338)
T cd00818 127 QLHEKGLLYRGYKV 140 (338)
T ss_pred HHHHCCCEeccCCe
Confidence 99999999998764
No 45
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=98.69 E-value=4.8e-09 Score=107.92 Aligned_cols=54 Identities=46% Similarity=0.760 Sum_probs=51.7
Q ss_pred HhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCC
Q psy6783 807 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGI 860 (1119)
Q Consensus 807 ~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~ 860 (1119)
.||.+|++|.+|+.++.+.|.|||+++++++|+|+||+||+|+|+++|+||++.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~ 55 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGE 55 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCC
Confidence 478899999999999999999999999999999999999999999999999873
No 46
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.67 E-value=6.7e-07 Score=106.82 Aligned_cols=130 Identities=22% Similarity=0.240 Sum_probs=98.7
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 413 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~ 413 (1119)
.+|-+=.|.|.+-.+.||||+|+.|..|+|+|.|+..||+|.-+--|-|.|..-|. . .+
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~-----------~-D~--------- 78 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGD-----------F-DD--------- 78 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCC-----------c-cC---------
Confidence 47899999999999999999999999999999999999999999999998743221 0 00
Q ss_pred HHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec--cchhhhhHHHHHHHHHH
Q psy6783 414 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYL 491 (1119)
Q Consensus 414 ~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~--~geS~y~~~v~~vi~~L 491 (1119)
-++.+.+.|. ++|-+ |+.+++...+.|.+.+..|||.++. .-.+.+.+.+.++++.|
T Consensus 79 ----------gddKIi~~A~------~~g~~-----~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L 137 (481)
T PRK14534 79 ----------GEDKVVKAAR------ERGLT-----VYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVL 137 (481)
T ss_pred ----------CCcHHHHHHH------HcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHH
Confidence 0122223332 12211 4567777888899999999997643 12456667899999999
Q ss_pred HHCCCeEeeCCCeE
Q psy6783 492 EKKGLLELDDGRKI 505 (1119)
Q Consensus 492 ~~kG~~~e~dGA~~ 505 (1119)
.++|++|+.+|.+.
T Consensus 138 ~~kG~aY~~~~~vy 151 (481)
T PRK14534 138 EENGFTYFVNGNVY 151 (481)
T ss_pred HHCCCEEEECCeEE
Confidence 99999999999754
No 47
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.67 E-value=1.2e-07 Score=111.45 Aligned_cols=133 Identities=18% Similarity=0.212 Sum_probs=97.6
Q ss_pred EEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHH
Q psy6783 335 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 414 (1119)
Q Consensus 335 kV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~ 414 (1119)
+.+|...-|+|+|++||||+|+.++.|+++|.++..|++|.....+.|.|..+-..+..... . .+..+..
T Consensus 2 ~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~---~---~~~~~~~---- 71 (382)
T cd00817 2 VFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLG---I---EGKTRHD---- 71 (382)
T ss_pred cEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhc---c---cccchhc----
Confidence 46788899999999999999999999999999999999999999999999988655432110 0 0000000
Q ss_pred HHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec--c---chhhhhHHHHHHHH
Q psy6783 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--R---GESFYQKHMEQLVP 489 (1119)
Q Consensus 415 y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~--~---geS~y~~~v~~vi~ 489 (1119)
. ..++|. +..+.+++...+.+.+.+.+||+++|+ . -+..|...++.++.
T Consensus 72 -------~-~~~~~~------------------~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 125 (382)
T cd00817 72 -------L-GREEFL------------------EKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFV 125 (382)
T ss_pred -------C-CHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHH
Confidence 0 011222 223456667778899999999999873 1 12345578999999
Q ss_pred HHHHCCCeEeeCCC
Q psy6783 490 YLEKKGLLELDDGR 503 (1119)
Q Consensus 490 ~L~~kG~~~e~dGA 503 (1119)
+|.++|++|+.+..
T Consensus 126 ~L~~~G~iy~~~~~ 139 (382)
T cd00817 126 RLYEKGLIYRDNRL 139 (382)
T ss_pred HHHHCCCEEeeeeE
Confidence 99999999987644
No 48
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.62 E-value=5.5e-07 Score=97.52 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=52.6
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGML 390 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L 390 (1119)
++++-+=-+.|-|.+++||||+|+.++.|+|+|.++..||+|.-.--+.|.|..+-.-
T Consensus 18 ~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~ 75 (213)
T cd00672 18 PGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKR 75 (213)
T ss_pred CCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHH
Confidence 4567788899999999999999999999999999999999999999999999877543
No 49
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=98.58 E-value=5.9e-07 Score=104.82 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=93.4
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 411 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l 411 (1119)
.|.+|-+=.|+|.|-++.||||+|+.|..|+|+|.|+..||+|.-+.-+.|.|..|-.-+.. ++.+
T Consensus 6 ~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~----------~G~~---- 71 (384)
T PRK12418 6 PGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAAR----------DGVD---- 71 (384)
T ss_pred CCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHH----------cCCC----
Confidence 35578999999999999999999999999999999999999999999999998877443221 1111
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcE-Ee-ccchhhhhHHHHHHHH
Q psy6783 412 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LT-ERGESFYQKHMEQLVP 489 (1119)
Q Consensus 412 ~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~-f~-~~geS~y~~~v~~vi~ 489 (1119)
|+.+++...+.|.+.+..|||. .+ ...-|.+.+.+.++++
T Consensus 72 --------------------------------------~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~~~~~i~ 113 (384)
T PRK12418 72 --------------------------------------WRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVELVE 113 (384)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHHHHHHHH
Confidence 2344455566788888999973 32 2223445678999999
Q ss_pred HHHHCCCeEeeCC
Q psy6783 490 YLEKKGLLELDDG 502 (1119)
Q Consensus 490 ~L~~kG~~~e~dG 502 (1119)
+|.++|++|+.+|
T Consensus 114 ~L~~kG~aY~~~~ 126 (384)
T PRK12418 114 KLLASGAAYVVDD 126 (384)
T ss_pred HHHHCCCEEEeCC
Confidence 9999999999987
No 50
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.54 E-value=4.4e-06 Score=101.46 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=45.9
Q ss_pred EEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchh
Q psy6783 335 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385 (1119)
Q Consensus 335 kV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~ 385 (1119)
.++|+-.-. |+|+.||||+|..+.+|+++|.|+..|++|.-++...|+|.
T Consensus 24 ~~~~~~g~~-psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~ 73 (510)
T PRK00750 24 PVVVETGIG-PSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDG 73 (510)
T ss_pred cEEEEeCCC-CCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCc
Confidence 377876554 99999999999999999999999999999999999999985
No 51
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=98.53 E-value=7.8e-07 Score=104.36 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=92.9
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+.+|-+=.|+|-|-++.||||+|+.|..|+|+|.|+..||+|.-+.-+.|.|..|-.-+.. ++.+
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~----------~g~t----- 98 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAER----------DGVD----- 98 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHH----------cCCC-----
Confidence 4578899999999999999999999999999999999999999999999998876432211 1111
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcE-E-eccchhhhhHHHHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-L-TERGESFYQKHMEQLVPY 490 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~-f-~~~geS~y~~~v~~vi~~ 490 (1119)
|+.+++...+.|.+.+..|||. + .+..-+.+.+.+.++++.
T Consensus 99 -------------------------------------~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~ 141 (411)
T TIGR03447 99 -------------------------------------WRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEK 141 (411)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHH
Confidence 2234455566788889999975 3 233345556789999999
Q ss_pred HHHCCCeEeeCC
Q psy6783 491 LEKKGLLELDDG 502 (1119)
Q Consensus 491 L~~kG~~~e~dG 502 (1119)
|.++|++|+.+|
T Consensus 142 L~~kG~aY~~~~ 153 (411)
T TIGR03447 142 LLAAGAAYEVEG 153 (411)
T ss_pred HHHCCCEEecCC
Confidence 999999999887
No 52
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=5.7e-07 Score=109.03 Aligned_cols=117 Identities=20% Similarity=0.339 Sum_probs=95.8
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
.++++|--.=|-|+|++|+||+++++.+|++||.++..||+|.-+..++++|+.|-.-+.. ++.
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~----------~g~------ 67 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK----------EGI------ 67 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHH----------cCC------
Confidence 4688999999999999999999999999999999999999999999999999988654332 111
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc---hhhhhHHHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVP 489 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g---eS~y~~~v~~vi~ 489 (1119)
+| +++++...+.+++++..|+|+||.++ ++.+...++++++
T Consensus 68 ------------------------------tP------~el~d~~~~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~ 111 (558)
T COG0143 68 ------------------------------TP------QELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFL 111 (558)
T ss_pred ------------------------------CH------HHHHHHHHHHHHHHHHHhCCcccccccCCCHHHHHHHHHHHH
Confidence 12 24556666778999999999998644 3345679999999
Q ss_pred HHHHCCCeEeeC
Q psy6783 490 YLEKKGLLELDD 501 (1119)
Q Consensus 490 ~L~~kG~~~e~d 501 (1119)
+|.++|++|+.+
T Consensus 112 ~L~~~G~I~~~~ 123 (558)
T COG0143 112 KLYENGDIYLRE 123 (558)
T ss_pred HHHHCCCEeccc
Confidence 999999999753
No 53
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=98.47 E-value=1.3e-06 Score=111.88 Aligned_cols=132 Identities=21% Similarity=0.256 Sum_probs=98.8
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+++.+|-..-|||||++||||+++.+++|+++|..+..||+|....-...+|..+-.-+......-|. +
T Consensus 37 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~---------~-- 105 (800)
T PRK13208 37 KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKD---------D-- 105 (800)
T ss_pred CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcc---------c--
Confidence 56799999999999999999999999999999999999999999999999999886543321000000 0
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEecc-----chhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~-----geS~y~~~v~~v 487 (1119)
+ ..++|.+.++ ++++...+.+.+.+.+||+++|+. -...|...++.+
T Consensus 106 ---------~-~~~~f~~~~~------------------~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~ 157 (800)
T PRK13208 106 ---------I-SREEFIELCR------------------ELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKS 157 (800)
T ss_pred ---------C-CHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHH
Confidence 0 0123333332 344556677888999999998852 134556789999
Q ss_pred HHHHHHCCCeEeeCCC
Q psy6783 488 VPYLEKKGLLELDDGR 503 (1119)
Q Consensus 488 i~~L~~kG~~~e~dGA 503 (1119)
+.+|.++|++|+.+.-
T Consensus 158 f~~L~~~Gliy~~~~~ 173 (800)
T PRK13208 158 FLDLYKKGLIYRAEAP 173 (800)
T ss_pred HHHHHHCCCeeecCcc
Confidence 9999999999986543
No 54
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=98.29 E-value=2.9e-06 Score=100.00 Aligned_cols=113 Identities=20% Similarity=0.399 Sum_probs=83.3
Q ss_pred EEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHHHH
Q psy6783 337 LVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416 (1119)
Q Consensus 337 ~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~y~ 416 (1119)
+|--.=|-|+|++||||+...+.+|+++|.++..|++|.-...+.+.|+.+-.-+... +.
T Consensus 2 ~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~----------g~---------- 61 (391)
T PF09334_consen 2 YITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQ----------GI---------- 61 (391)
T ss_dssp EEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHT----------TS----------
T ss_pred EEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHc----------CC----------
Confidence 3444558899999999999999999999999999999999999999999886544310 00
Q ss_pred HhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc---hhhhhHHHHHHHHHHHH
Q psy6783 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVPYLEK 493 (1119)
Q Consensus 417 ~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g---eS~y~~~v~~vi~~L~~ 493 (1119)
+| +.+++.....|++.++.+||+||.+. +..+...+++++++|.+
T Consensus 62 --------------------------~p------~~~~~~~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~ 109 (391)
T PF09334_consen 62 --------------------------DP------EEFCDKYSAKFKELLEALNISYDRFIRTTDDRHKEFVQEIFKRLYD 109 (391)
T ss_dssp ---------------------------H------HHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHHHH
T ss_pred --------------------------CH------HHHHHHHHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHHHHHHHHh
Confidence 11 13455566778899999999876432 34566889999999999
Q ss_pred CCCeEeeC
Q psy6783 494 KGLLELDD 501 (1119)
Q Consensus 494 kG~~~e~d 501 (1119)
+|++|+.+
T Consensus 110 ~G~I~~~~ 117 (391)
T PF09334_consen 110 NGYIYKRE 117 (391)
T ss_dssp TTSEEEEE
T ss_pred cCceeecc
Confidence 99999764
No 55
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.28 E-value=1.4e-05 Score=96.72 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=45.6
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCc
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~ 383 (1119)
++++|+-.=. |+|+.||||+|..+.+|.++|.++..|++|.-++..+|+
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~ 66 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNY 66 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 3688887666 999999999999999999999999999999999999997
No 56
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.24 E-value=1.1e-05 Score=98.94 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=95.6
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 411 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l 411 (1119)
.+.+|-+=.|.|.+-.+.||||+|+.|..|+|+|.|+..||+|.-+--+.|.|..|-.-+.. .+..
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e----------~G~s---- 310 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAE----------NGET---- 310 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHH----------cCCC----
Confidence 35679999999999999999999999999999999999999999999999988766332211 1111
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec--cchhhhhHHHHHHHH
Q psy6783 412 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVP 489 (1119)
Q Consensus 412 ~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~--~geS~y~~~v~~vi~ 489 (1119)
|+.+++...+.|.+.+..|||.... ...+.+.+.+.++++
T Consensus 311 --------------------------------------p~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~ 352 (699)
T PRK14535 311 --------------------------------------IGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMIE 352 (699)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHH
Confidence 2344455566788888999986532 224566688999999
Q ss_pred HHHHCCCeEee-CCCeEE
Q psy6783 490 YLEKKGLLELD-DGRKIM 506 (1119)
Q Consensus 490 ~L~~kG~~~e~-dGA~~~ 506 (1119)
.|.++|++|+. +|..+.
T Consensus 353 ~LidkG~AYe~~~gsVYF 370 (699)
T PRK14535 353 TLIQNGKAYPAANGDVYY 370 (699)
T ss_pred HHHHCCCEEEeCCCCEEE
Confidence 99999999986 676543
No 57
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=98.21 E-value=9.8e-06 Score=104.62 Aligned_cols=133 Identities=21% Similarity=0.269 Sum_probs=97.7
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
.++..|-..-||+||++|+||+++.++.|+++|..+-.||+|....-...+|..+-..+.... .. ++....++
T Consensus 32 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~---~~---~g~~~~~~- 104 (861)
T TIGR00422 32 KPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKL---GA---EGKTKHDL- 104 (861)
T ss_pred CCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHh---cc---cCCchhhC-
Confidence 467889999999999999999999999999999999999999999999999997765443211 10 01111111
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~v 487 (1119)
..++|.++++ ++++.+...+.+.+.+||+++|+.. ...|...+..+
T Consensus 105 -----------~~e~f~~~~~------------------~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~ 155 (861)
T TIGR00422 105 -----------GREEFREKIW------------------EWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEA 155 (861)
T ss_pred -----------CHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHH
Confidence 1133444443 2344566778888999999998632 23455789999
Q ss_pred HHHHHHCCCeEeeC
Q psy6783 488 VPYLEKKGLLELDD 501 (1119)
Q Consensus 488 i~~L~~kG~~~e~d 501 (1119)
+.+|.++|++|+..
T Consensus 156 F~~L~~~GlIy~~~ 169 (861)
T TIGR00422 156 FVRLYEKGLIYRGE 169 (861)
T ss_pred HHHHHHCCCeeecC
Confidence 99999999999854
No 58
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=98.21 E-value=1.3e-05 Score=102.75 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=89.7
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 411 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l 411 (1119)
+++.++++ .=|+|+|.|||||+|+.+++|+++|.++..||+|.......++|..+-..+.. . +.
T Consensus 28 k~k~~v~~-~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~--~--------g~----- 91 (842)
T TIGR00396 28 KPKYYILD-MFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIK--R--------GI----- 91 (842)
T ss_pred CCCEEEEc-CCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHH--c--------CC-----
Confidence 34446666 48999999999999999999999999999999999999999999987543211 0 00
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEecc-----chhhhhHHHHH
Q psy6783 412 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GESFYQKHMEQ 486 (1119)
Q Consensus 412 ~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~-----geS~y~~~v~~ 486 (1119)
.+ ..+.+...+.+.+.+.+||+++|+. .+..|...++.
T Consensus 92 -------------~p------------------------~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~ 134 (842)
T TIGR00396 92 -------------HP------------------------AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQW 134 (842)
T ss_pred -------------CH------------------------HHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHH
Confidence 00 0122334466778899999988742 13345578999
Q ss_pred HHHHHHHCCCeEeeCCC
Q psy6783 487 LVPYLEKKGLLELDDGR 503 (1119)
Q Consensus 487 vi~~L~~kG~~~e~dGA 503 (1119)
++.+|-++|++|+.+.-
T Consensus 135 ~F~~L~~kGliy~~~~~ 151 (842)
T TIGR00396 135 IFLELFEKGLAYVKEAD 151 (842)
T ss_pred HHHHHHHCCCeEeeccc
Confidence 99999999999987654
No 59
>PLN02610 probable methionyl-tRNA synthetase
Probab=98.20 E-value=7.1e-06 Score=104.22 Aligned_cols=116 Identities=16% Similarity=0.304 Sum_probs=91.9
Q ss_pred cEEEEEeeCCCCCCCccccccchh-cHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRST-IIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsa-iiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
++++|--.=|.|+|++||||++++ +..|+++|.++..|++|.-...++++|+.+-.-+.. .+.
T Consensus 17 ~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~----------~g~------ 80 (801)
T PLN02610 17 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE----------ENC------ 80 (801)
T ss_pred CCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH----------cCC------
Confidence 479999999999999999999986 558999999999999999999999999987553311 001
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc---hhhhhHHHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVP 489 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g---eS~y~~~v~~vi~ 489 (1119)
+| +.+++.+.+.+++.+.+|||+||.++ +..|...+++++.
T Consensus 81 ------------------------------~p------~e~~d~~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~ 124 (801)
T PLN02610 81 ------------------------------TP------KEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFK 124 (801)
T ss_pred ------------------------------CH------HHHHHHHHHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHH
Confidence 11 23445556678888999999987543 2345678999999
Q ss_pred HHHHCCCeEeeC
Q psy6783 490 YLEKKGLLELDD 501 (1119)
Q Consensus 490 ~L~~kG~~~e~d 501 (1119)
+|.++|++|+..
T Consensus 125 ~L~~~G~Iy~~~ 136 (801)
T PLN02610 125 KLMENNWLSENT 136 (801)
T ss_pred HHHHCCCEEEee
Confidence 999999999764
No 60
>PLN02381 valyl-tRNA synthetase
Probab=98.17 E-value=1.6e-05 Score=103.97 Aligned_cols=134 Identities=21% Similarity=0.256 Sum_probs=95.3
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+++..|...-||+||+|||||+++.+|.|+++|..+..||+|....-...+|..+-..... ..... .+....++
T Consensus 127 ~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek---~l~~~--~~~~~~~~- 200 (1066)
T PLN02381 127 KPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEK---KLMRE--RHLTRHDI- 200 (1066)
T ss_pred CCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHH---HhHhh--cCCChhhC-
Confidence 4668999999999999999999999999999999999999999999999999877543321 00000 00011111
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~v 487 (1119)
..++|.+.+++ +.+.....+...+.+||+++|+.. .-.|...+..+
T Consensus 201 -----------~re~f~~~~~~------------------~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 251 (1066)
T PLN02381 201 -----------GREEFVSEVWK------------------WKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEA 251 (1066)
T ss_pred -----------CHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHH
Confidence 11234444432 334455667778899999887532 23445689999
Q ss_pred HHHHHHCCCeEeeC
Q psy6783 488 VPYLEKKGLLELDD 501 (1119)
Q Consensus 488 i~~L~~kG~~~e~d 501 (1119)
+..|-++|++|...
T Consensus 252 F~~L~~~GlIyr~~ 265 (1066)
T PLN02381 252 FVRLYKEGLIYRDI 265 (1066)
T ss_pred HHHHHHCCCEEecc
Confidence 99999999999864
No 61
>PLN02943 aminoacyl-tRNA ligase
Probab=98.11 E-value=1.1e-05 Score=104.87 Aligned_cols=134 Identities=16% Similarity=0.228 Sum_probs=95.8
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+++.+|...-||+||+|||||+++.++.|+++|..+..||+|....-.+.+|..+-........ . ++..-.++
T Consensus 87 ~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~---~---~~~~~~~~- 159 (958)
T PLN02943 87 GDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLA---S---EGIKRTDL- 159 (958)
T ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHH---H---cCCChhhC-
Confidence 4568888889999999999999999999999999999999999999999988766543321100 0 00000000
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccch-----hhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE-----SFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~ge-----S~y~~~v~~v 487 (1119)
..++|.+.+++ +.+.....+...+.+||+++|+..+ ..|...+..+
T Consensus 160 -----------~re~f~~~~~~------------------~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 210 (958)
T PLN02943 160 -----------GRDEFTKRVWE------------------WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEA 210 (958)
T ss_pred -----------CHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHH
Confidence 12344444433 3344556678889999999886322 3455689999
Q ss_pred HHHHHHCCCeEeeCC
Q psy6783 488 VPYLEKKGLLELDDG 502 (1119)
Q Consensus 488 i~~L~~kG~~~e~dG 502 (1119)
+.+|-++|++|...-
T Consensus 211 F~~l~~~Gliyr~~~ 225 (958)
T PLN02943 211 FVRLHEKGLIYQGSY 225 (958)
T ss_pred HHHHHHCCCEEecCc
Confidence 999999999998654
No 62
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=98.11 E-value=2.6e-05 Score=102.04 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=96.1
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 411 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l 411 (1119)
.+++.+|-..-|||||+|||||+++.++.|+++|..+..||+|....-...+|...-...+.-.. +. .+....++
T Consensus 58 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~--~~---~~~~~~~~ 132 (995)
T PTZ00419 58 SGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLM--KE---ENKTRHDL 132 (995)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHH--Hh---cCCChHHc
Confidence 35679999999999999999999999999999999999999999999999988765332221000 00 01111111
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccch-----hhhhHHHHH
Q psy6783 412 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE-----SFYQKHMEQ 486 (1119)
Q Consensus 412 ~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~ge-----S~y~~~v~~ 486 (1119)
..++|.+.+++ +.+.....+...+.+||+++|+..+ ..|...+..
T Consensus 133 ------------~~e~f~~~~~~------------------w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~ 182 (995)
T PTZ00419 133 ------------GREEFLKKVWE------------------WKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKE 182 (995)
T ss_pred ------------CHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHH
Confidence 12344444443 2334556677889999999885322 234468999
Q ss_pred HHHHHHHCCCeEeeCC
Q psy6783 487 LVPYLEKKGLLELDDG 502 (1119)
Q Consensus 487 vi~~L~~kG~~~e~dG 502 (1119)
++.+|.++|++|....
T Consensus 183 ~F~~l~~~Gliyr~~~ 198 (995)
T PTZ00419 183 AFVRLYEDGLIYRDTR 198 (995)
T ss_pred HHHHHHHCCCEEecce
Confidence 9999999999998653
No 63
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=98.11 E-value=2.5e-05 Score=102.38 Aligned_cols=134 Identities=16% Similarity=0.256 Sum_probs=96.0
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+++..|--.-||+||+|||||+++.++.|+++|..+..||+|....-..++|.++-.....- .... ++....++
T Consensus 47 ~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~---l~~~--~~~~~~~~- 120 (1052)
T PRK14900 47 RPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKE---LKKT--EKKSRHDL- 120 (1052)
T ss_pred CCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHH---hhhc--cCCChhhC-
Confidence 45688888999999999999999999999999999999999999999999999886533211 0000 01111111
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccch-----hhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE-----SFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~ge-----S~y~~~v~~v 487 (1119)
..++|.+.+++ +.+...+.+.+.+.+||+++|+..+ ..|...+..+
T Consensus 121 -----------~~e~f~~~~~~------------------~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 171 (1052)
T PRK14900 121 -----------GREAFLERVWA------------------WKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREV 171 (1052)
T ss_pred -----------CHHHHHHHHHH------------------HHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHH
Confidence 12234444432 2334556677888999999886332 3455689999
Q ss_pred HHHHHHCCCeEeeC
Q psy6783 488 VPYLEKKGLLELDD 501 (1119)
Q Consensus 488 i~~L~~kG~~~e~d 501 (1119)
+.+|.++|++|+..
T Consensus 172 F~~L~~~Gliyr~~ 185 (1052)
T PRK14900 172 FVRLHEEGLIYREK 185 (1052)
T ss_pred HHHHHHCCCEEecc
Confidence 99999999999854
No 64
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=98.09 E-value=3e-05 Score=99.19 Aligned_cols=117 Identities=19% Similarity=0.209 Sum_probs=88.6
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 413 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~ 413 (1119)
+.++++= -|+|+|+|||||+|+.++.|+++|..+..||+|.......++|..+-.-+.. .+.
T Consensus 33 ~~~i~~~-pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~----------~g~------- 94 (805)
T PRK00390 33 KYYVLDM-FPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIK----------TGT------- 94 (805)
T ss_pred CEEEEcc-CCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHH----------cCC-------
Confidence 4455544 4999999999999999999999999999999999999999999887543211 000
Q ss_pred HHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEecc-----chhhhhHHHHHHH
Q psy6783 414 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GESFYQKHMEQLV 488 (1119)
Q Consensus 414 ~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~-----geS~y~~~v~~vi 488 (1119)
.+ ..+++...+.+++.+.+||+++|+. -+..|...++.++
T Consensus 95 -----------~~------------------------~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f 139 (805)
T PRK00390 95 -----------HP------------------------AEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIF 139 (805)
T ss_pred -----------CH------------------------HHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHH
Confidence 00 0123344567888899999988742 1335567899999
Q ss_pred HHHHHCCCeEeeCCC
Q psy6783 489 PYLEKKGLLELDDGR 503 (1119)
Q Consensus 489 ~~L~~kG~~~e~dGA 503 (1119)
.+|.++|++|..+.-
T Consensus 140 ~~L~~~Gliy~~~~~ 154 (805)
T PRK00390 140 LKLYEKGLAYRKESP 154 (805)
T ss_pred HHHHHCCCEEEecCE
Confidence 999999999987653
No 65
>PLN02563 aminoacyl-tRNA ligase
Probab=98.08 E-value=1.6e-05 Score=102.59 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=87.9
Q ss_pred CCcEEEEEeeCCCCCCC-ccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHH
Q psy6783 332 KKLRVLVDFSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 410 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkp-LHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~ 410 (1119)
+++.++++-- |+|+|. |||||+|+.+++|+++|..+..||+|...--...+|..+-..+. .. +.
T Consensus 109 k~k~~v~~~~-PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~--~~--------g~---- 173 (963)
T PLN02563 109 KPKFYVLDMF-PYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAI--ET--------GT---- 173 (963)
T ss_pred CCCEEEEeCC-CCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHH--Hc--------CC----
Confidence 3444555544 999996 99999999999999999999999999999999999998854321 10 00
Q ss_pred HHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEecc-----chhhhhHHHH
Q psy6783 411 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GESFYQKHME 485 (1119)
Q Consensus 411 l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~-----geS~y~~~v~ 485 (1119)
.+. . ......+.+++.+.+||++||+. .+..|...++
T Consensus 174 --------------~p~---------------------~---~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q 215 (963)
T PLN02563 174 --------------HPK---------------------I---TTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQ 215 (963)
T ss_pred --------------ChH---------------------H---hHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHH
Confidence 000 0 11223456788899999999852 2345667899
Q ss_pred HHHHHHHHCCCeEeeCC
Q psy6783 486 QLVPYLEKKGLLELDDG 502 (1119)
Q Consensus 486 ~vi~~L~~kG~~~e~dG 502 (1119)
.++.+|.++|++|+.+.
T Consensus 216 ~~F~~L~~~GliY~~~~ 232 (963)
T PLN02563 216 WIFLQLLKRGLAYQAEV 232 (963)
T ss_pred HHHHHHHHCCCEEeeee
Confidence 99999999999998754
No 66
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=98.04 E-value=3.3e-05 Score=99.92 Aligned_cols=134 Identities=18% Similarity=0.255 Sum_probs=94.8
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+++.+|-..-||+||.|||||+++.++.|+++|..+-.||+|....-...+|...-..... .... ++....++
T Consensus 35 ~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~---~l~~---~g~~~~~~- 107 (874)
T PRK05729 35 KKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVER---QLAA---EGKSRHDL- 107 (874)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHH---HHHh---cCCChHHC-
Confidence 4568999999999999999999999999999999999999999998888888654322211 0000 01111111
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~v 487 (1119)
..++|.+.+++ +++.....+.+.+.+||+++|+.. ...|...+..+
T Consensus 108 -----------~re~f~~~~~~------------------w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~ 158 (874)
T PRK05729 108 -----------GREKFLEKVWE------------------WKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREV 158 (874)
T ss_pred -----------CHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHH
Confidence 11334444432 334556667788899999988532 23455789999
Q ss_pred HHHHHHCCCeEeeCC
Q psy6783 488 VPYLEKKGLLELDDG 502 (1119)
Q Consensus 488 i~~L~~kG~~~e~dG 502 (1119)
+.+|-++|++|...-
T Consensus 159 F~~L~~~GlIyr~~~ 173 (874)
T PRK05729 159 FVRLYEKGLIYRGKR 173 (874)
T ss_pred HHHHHHCCCEeecCc
Confidence 999999999998654
No 67
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=98.03 E-value=1.7e-05 Score=102.89 Aligned_cols=139 Identities=21% Similarity=0.286 Sum_probs=97.1
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
.++..|-..=||+||+||+||+|+.++.|+++|..+..||+|..-.-..-.|+.+...+.-+..+-+. .+
T Consensus 24 ~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~------~~---- 93 (938)
T TIGR00395 24 REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEL------TI---- 93 (938)
T ss_pred CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhh------cc----
Confidence 46799999999999999999999999999999999999999999999999999987765544211000 00
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~v 487 (1119)
+.|.... .. ..++|.+.+ || ..+++.....+.+.+.+||+++|+.. .-.|...++.+
T Consensus 94 ~~~~~~~-~i-~~~~i~~~~----------~~------~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~ 155 (938)
T TIGR00395 94 KNYTEVH-AI-PREELLKFT----------DP------EYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQ 155 (938)
T ss_pred ccchhhc-cC-CHHHHHhhc----------CH------HHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHH
Confidence 0011000 00 122333322 11 12334455667788899999988632 23455789999
Q ss_pred HHHHHHCCCeEe
Q psy6783 488 VPYLEKKGLLEL 499 (1119)
Q Consensus 488 i~~L~~kG~~~e 499 (1119)
+.+|.++|++|.
T Consensus 156 f~~L~e~G~iy~ 167 (938)
T TIGR00395 156 MNKLKELGLIVK 167 (938)
T ss_pred HHHHHHCCCEec
Confidence 999999999986
No 68
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=4e-05 Score=90.46 Aligned_cols=127 Identities=22% Similarity=0.281 Sum_probs=95.5
Q ss_pred CCCCCCCCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCC
Q psy6783 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKS 405 (1119)
Q Consensus 326 ~~~~~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~ 405 (1119)
.+.... +.+|-+=.|.|-+---.||||+|+.|.-|.|.|+|++.||.|.-+--|.|-
T Consensus 14 ~F~P~~-~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDI---------------------- 70 (464)
T COG0215 14 EFVPID-PGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDI---------------------- 70 (464)
T ss_pred cccCCC-CCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccc----------------------
Confidence 343333 344999999999999999999999999999999999999998877777771
Q ss_pred CChHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcE-Ee-ccchhhhhHH
Q psy6783 406 PPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LT-ERGESFYQKH 483 (1119)
Q Consensus 406 ~~i~~l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~-f~-~~geS~y~~~ 483 (1119)
|+.+.++|++ +|- -|+.+.+...+.|.+.++.|||. -+ +-.-+.|-+.
T Consensus 71 -------------------DDKIi~rA~~------~g~-----~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~ 120 (464)
T COG0215 71 -------------------DDKIINRARE------EGL-----SIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDE 120 (464)
T ss_pred -------------------cHHHHHHHHH------hCC-----CHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHH
Confidence 1222333331 221 26677788888999999999984 22 2234667778
Q ss_pred HHHHHHHHHHCCCeEee-CCCeE
Q psy6783 484 MEQLVPYLEKKGLLELD-DGRKI 505 (1119)
Q Consensus 484 v~~vi~~L~~kG~~~e~-dGA~~ 505 (1119)
+-+.|++|.++|++|+. +|.+.
T Consensus 121 iI~~I~~LiekG~AY~~~~G~VY 143 (464)
T COG0215 121 IIEFIEKLIEKGYAYVADDGDVY 143 (464)
T ss_pred HHHHHHHHHHCCceEEecCCcEE
Confidence 88999999999999998 56644
No 69
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=98.03 E-value=3.6e-05 Score=86.62 Aligned_cols=125 Identities=22% Similarity=0.227 Sum_probs=90.0
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 411 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l 411 (1119)
++++|-+=.|.|-+-...||||+|+.|.=|.|.|.|++.||+|.-+--|-|.-
T Consensus 5 ~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiD--------------------------- 57 (300)
T PF01406_consen 5 NPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDID--------------------------- 57 (300)
T ss_dssp CTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SS---------------------------
T ss_pred CCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccc---------------------------
Confidence 46789999999999999999999999999999999999999999998888842
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEE-e-ccchhhhhHHHHHHHH
Q psy6783 412 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL-T-ERGESFYQKHMEQLVP 489 (1119)
Q Consensus 412 ~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f-~-~~geS~y~~~v~~vi~ 489 (1119)
+.+.+.|+ +.|- -|+.+.+...+.|.+.+..|||.- + +-.-|.+-+.+.+.++
T Consensus 58 --------------DKii~~A~------~~g~-----~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ii~~i~ 112 (300)
T PF01406_consen 58 --------------DKIIKRAR------EEGV-----SPQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPEIIELIE 112 (300)
T ss_dssp --------------HHHHHHHH------HTTS------HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHHHHHHHH
T ss_pred --------------hHHHHHHH------hccC-----CHHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHHHHHHHH
Confidence 11222222 1121 155666777788999999999863 2 1224666678889999
Q ss_pred HHHHCCCeEeeC-CCeEEEc
Q psy6783 490 YLEKKGLLELDD-GRKIMWG 508 (1119)
Q Consensus 490 ~L~~kG~~~e~d-GA~~~~~ 508 (1119)
.|.++|++|+.+ |.+....
T Consensus 113 ~Li~~G~AY~~~~g~VYFdv 132 (300)
T PF01406_consen 113 KLIDKGHAYESEDGSVYFDV 132 (300)
T ss_dssp HHHHTTSEEEETTSEEEE-C
T ss_pred HHHHCCCeEEcCCCcEEEee
Confidence 999999999998 7755433
No 70
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=98.03 E-value=2e-05 Score=97.90 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=89.9
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 411 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l 411 (1119)
++++..|-..-||+||+||+||+++-++.|+++|..+-.||+|....-..-+|..+-..+.. .+.... -.+
T Consensus 21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek---~l~~~~-----~~~- 91 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEK---KLGIKE-----KKD- 91 (601)
T ss_dssp TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHH---HTTTTS-----HHH-
T ss_pred CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHH---hhcccc-----ccc-
Confidence 35678888999999999999999999999999999999999999999999999999664432 111100 000
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHH
Q psy6783 412 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQ 486 (1119)
Q Consensus 412 ~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~ 486 (1119)
...+ ..++|.+.++ ++.+...+.+.+.+.+||+++|+.. ...|...+..
T Consensus 92 -------~~~~-~~~~~~~~~~------------------~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~ 145 (601)
T PF00133_consen 92 -------RKDL-GREEFREECR------------------EWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWW 145 (601)
T ss_dssp -------CSCS-THHHHHHHHH------------------HHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHH
T ss_pred -------cccc-ccccchhhhc------------------chhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHH
Confidence 0011 1233443333 3445566778888999999876421 2345678999
Q ss_pred HHHHHHHCCCeEee
Q psy6783 487 LVPYLEKKGLLELD 500 (1119)
Q Consensus 487 vi~~L~~kG~~~e~ 500 (1119)
++.+|.++|++|..
T Consensus 146 ~F~~l~~kglIyr~ 159 (601)
T PF00133_consen 146 QFKKLYEKGLIYRG 159 (601)
T ss_dssp HHHHHHHTTSEEEE
T ss_pred HHHHHHhcCcEEee
Confidence 99999999999973
No 71
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.97 E-value=3.1e-05 Score=100.28 Aligned_cols=130 Identities=17% Similarity=0.206 Sum_probs=96.3
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
.++.+|-..-||+||++||||++|.++.|+++|..+..||+|....-..-+|..+-..+... ... .
T Consensus 48 ~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~---l~~------~----- 113 (912)
T PRK05743 48 KPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKK---LGK------K----- 113 (912)
T ss_pred CCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHH---cCC------c-----
Confidence 45688999999999999999999999999999999999999999999999999887654321 100 0
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~v 487 (1119)
...+ ..++|.+.+++ +.+...+.+.+.+.+||+++|+.. ...|...+..+
T Consensus 114 ------~~~~-~~~~f~~~c~~------------------~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~ 168 (912)
T PRK05743 114 ------GKKL-SAAEFRKKCRE------------------YALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRA 168 (912)
T ss_pred ------cccC-CHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHH
Confidence 0000 12345555543 334455567778999999776421 23455689999
Q ss_pred HHHHHHCCCeEeeC
Q psy6783 488 VPYLEKKGLLELDD 501 (1119)
Q Consensus 488 i~~L~~kG~~~e~d 501 (1119)
+.+|.++|++|+..
T Consensus 169 f~~l~~~Gliy~~~ 182 (912)
T PRK05743 169 LGKMAKKGYLYKGL 182 (912)
T ss_pred HHHHHHCCCEEecc
Confidence 99999999999854
No 72
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=97.96 E-value=9e-05 Score=97.67 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=95.9
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+++.++--.-||+||++|+||+++.++-|+++|..+..||+|.+..-...+|..+-..+.. ...-. ....+.++
T Consensus 101 ~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk---~lg~~--~k~~i~~~- 174 (1205)
T PTZ00427 101 KKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEK---ENNIN--KKEDILKM- 174 (1205)
T ss_pred CCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHH---HhCCC--cccchhhc-
Confidence 4557778889999999999999999999999999999999999999999999998764432 11100 00111111
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~v 487 (1119)
..+.|.+.++ .++....+.+...+.+||++.|+.. .-.|...+..+
T Consensus 175 -----------g~~~f~e~c~------------------~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~ 225 (1205)
T PTZ00427 175 -----------GIDVYNEKCR------------------GIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWV 225 (1205)
T ss_pred -----------CHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHH
Confidence 0123334343 3344455677888999998876421 23455789999
Q ss_pred HHHHHHCCCeEeeC
Q psy6783 488 VPYLEKKGLLELDD 501 (1119)
Q Consensus 488 i~~L~~kG~~~e~d 501 (1119)
+.+|-++|++|+..
T Consensus 226 f~~L~ekGlIYr~~ 239 (1205)
T PTZ00427 226 FSELYKNNYVYKSF 239 (1205)
T ss_pred HHHHHHCCCEEecc
Confidence 99999999999854
No 73
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.95 E-value=1.2e-05 Score=81.55 Aligned_cols=133 Identities=20% Similarity=0.141 Sum_probs=102.2
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
.+|+||+ |+++++|.++|.++..|++|..+++++|||.|.+..+...
T Consensus 11 ~~HlGh~-~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~-------------------------------- 57 (143)
T cd00802 11 YLHIGHL-RTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK-------------------------------- 57 (143)
T ss_pred CccHhHH-HHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc--------------------------------
Confidence 6899998 9999999999999999999999999999999998754321
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccccccchhhhhHHHHHHHHHhcCCeeeecCceEE
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIV 715 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~v 715 (1119)
...|+.+++.+.+.|++.|+ |. +..+...+...+.. ..+
T Consensus 58 --------------------~~~~~~~~~~~~~~~~~~~~-------------y~--~~~~a~~~~~~~~~------~~i 96 (143)
T cd00802 58 --------------------GENAKAFVERWIERIKEDVE-------------YM--FLQAADFLLLYETE------CDI 96 (143)
T ss_pred --------------------CCCHHHHHHHHHHHHHHHHH-------------HH--HHHHHHHHHHhhCC------cEE
Confidence 24689999999999999998 31 22222222222111 345
Q ss_pred EEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCccccccc
Q psy6783 716 YVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRS 766 (1119)
Q Consensus 716 ~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~ 766 (1119)
++.+..|..|++...++++.+|.. .+..|+.||++.+.+|+|||+|+
T Consensus 97 ~~~G~Dq~~h~~~~~~i~~~~~~~----~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 97 HLGGSDQLGHIELGLELLKKAGGP----ARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred EEechhHHHHHHHHHHHHHHhCCC----CCceEEEeCCeECCCCCcCCCCC
Confidence 556666667999999999998742 25678889999998888999874
No 74
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.94 E-value=4.6e-05 Score=98.56 Aligned_cols=134 Identities=20% Similarity=0.207 Sum_probs=96.3
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+++..|-..-|||+|+||+||++|.++.|+++|..+..||+|....-...+|..+-..+... ..-. ....+..+
T Consensus 35 ~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~---l~~~--~~~~~~~~- 108 (861)
T TIGR00392 35 KPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKK---LGIS--GKKEISSL- 108 (861)
T ss_pred CCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHH---hCcc--cccccchh-
Confidence 45577888889999999999999999999999999999999999999999999887654321 1100 00001000
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~v 487 (1119)
..++|.+.+++ +.....+.+.+.+.+||+++|+.. .-.|...+..+
T Consensus 109 -----------~~~~f~~~c~~------------------~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~ 159 (861)
T TIGR00392 109 -----------EIEEFREKCRE------------------FALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWL 159 (861)
T ss_pred -----------hHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHH
Confidence 11344444443 333455667788999999887532 23456789999
Q ss_pred HHHHHHCCCeEeeC
Q psy6783 488 VPYLEKKGLLELDD 501 (1119)
Q Consensus 488 i~~L~~kG~~~e~d 501 (1119)
+.+|.++|++|...
T Consensus 160 f~~l~~~gliyr~~ 173 (861)
T TIGR00392 160 FKEAHEKGLLYRGL 173 (861)
T ss_pred HHHHHHCCCEeecc
Confidence 99999999999743
No 75
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.89 E-value=1.2e-05 Score=95.44 Aligned_cols=44 Identities=11% Similarity=0.003 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhcCcEEec-cchhhhhHHHHHHHHHHHHCCCeEe
Q psy6783 456 VSRRDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGLLEL 499 (1119)
Q Consensus 456 ~s~~~~~~~y~~l~i~f~~-~geS~y~~~v~~vi~~L~~kG~~~e 499 (1119)
.+.+.+.+.+.+||+.||+ ..+|...+...+++++|.++|++|.
T Consensus 52 ~~~~~I~e~L~wLGI~~De~y~QSer~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 52 EYADAIAEDLKWLGINWDRTFRQSDRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred HHHHHHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHHCCCEEE
Confidence 3456677888899998874 3455555678999999999999884
No 76
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=4.4e-05 Score=95.95 Aligned_cols=118 Identities=22% Similarity=0.246 Sum_probs=81.8
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 413 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~ 413 (1119)
+|.-|=.-=|-|.|.|||||.|+-.|||++||..|..||+|.-=.--.=+|..+-..+...
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~------------------- 94 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKI------------------- 94 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHh-------------------
Confidence 4666777789999999999999999999999999999999975444444444332222111
Q ss_pred HHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHHH
Q psy6783 414 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQLV 488 (1119)
Q Consensus 414 ~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~vi 488 (1119)
.. +|. .+.....+.+++-+.+||.++|+.- .-.|...++-.+
T Consensus 95 ---------~~------------------~P~------~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F 141 (814)
T COG0495 95 ---------GT------------------DPA------KWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQF 141 (814)
T ss_pred ---------CC------------------ChH------HHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHH
Confidence 01 221 1223344556667778887776532 234667889999
Q ss_pred HHHHHCCCeEeeCCC
Q psy6783 489 PYLEKKGLLELDDGR 503 (1119)
Q Consensus 489 ~~L~~kG~~~e~dGA 503 (1119)
-+|.++|++|..+..
T Consensus 142 ~kL~ekGL~y~~~~~ 156 (814)
T COG0495 142 LKLYEKGLAYRKEAP 156 (814)
T ss_pred HHHHHCCCEEecccc
Confidence 999999999986654
No 77
>PLN02882 aminoacyl-tRNA ligase
Probab=97.87 E-value=7.5e-05 Score=98.52 Aligned_cols=133 Identities=16% Similarity=0.135 Sum_probs=95.7
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 413 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~ 413 (1119)
++.++--.-||+||++|+||+++.+|-|+++|..+..||+|.+..-...+|..+-.-+..- .+- .... ++.+
T Consensus 38 ~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~---lgi--~~~~---~i~~ 109 (1159)
T PLN02882 38 PEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKK---LGI--KRRD---DVLK 109 (1159)
T ss_pred CCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHH---cCC--CCcc---chhh
Confidence 4577788899999999999999999999999999999999999999999999987654211 100 0001 1111
Q ss_pred HHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHHH
Q psy6783 414 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQLV 488 (1119)
Q Consensus 414 ~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~vi 488 (1119)
+. -++|.+.++ .++....+.+++.+.+||+++|+.. .-.|...+..++
T Consensus 110 ~g---------~~~f~~~c~------------------~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f 162 (1159)
T PLN02882 110 MG---------IDKYNEECR------------------SIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVF 162 (1159)
T ss_pred cC---------HHHHHHHHH------------------HHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHH
Confidence 10 123444443 3445566678888999998876421 234557899999
Q ss_pred HHHHHCCCeEeeC
Q psy6783 489 PYLEKKGLLELDD 501 (1119)
Q Consensus 489 ~~L~~kG~~~e~d 501 (1119)
.+|-++|++|...
T Consensus 163 ~~l~~kGliyr~~ 175 (1159)
T PLN02882 163 KQLFEKGLVYKGF 175 (1159)
T ss_pred HHHHHCCCEEecc
Confidence 9999999999743
No 78
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=97.81 E-value=8.6e-05 Score=96.64 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=94.2
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
.++.+|--.-||++|.|||||++|-++.|+++|..+..||+|...--..-+|..+-.-+.. +... ++....++
T Consensus 53 ~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek---~~~~---~~~~~~~~- 125 (961)
T PRK13804 53 RPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEE---KYRA---KGKNKDEV- 125 (961)
T ss_pred CCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHH---hhhh---cCCChHhC-
Confidence 3457888899999999999999999999999999999999999999999999988643321 1100 00000000
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~v 487 (1119)
..++|.+.+++ +.....+.+.+.+.+||+++|+.. ...|...+..+
T Consensus 126 -----------~~~~f~~~c~~------------------~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~ 176 (961)
T PRK13804 126 -----------PVAEFRKECRE------------------YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIARE 176 (961)
T ss_pred -----------CHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHH
Confidence 11234444443 223344567778899999987532 23455689999
Q ss_pred HHHHHHCCCeEeeC
Q psy6783 488 VPYLEKKGLLELDD 501 (1119)
Q Consensus 488 i~~L~~kG~~~e~d 501 (1119)
+.+|.++|++|...
T Consensus 177 F~~l~~kGliyr~~ 190 (961)
T PRK13804 177 FGKFAAKGQLYRGS 190 (961)
T ss_pred HHHHHHCCCEEeCC
Confidence 99999999999754
No 79
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=97.81 E-value=7.1e-05 Score=86.02 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=78.9
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
..|+||+ |+.++.|.|+|.++..|++|.-+-=+-|.|...-
T Consensus 14 ~~HlGH~-~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~-------------------------------------- 54 (319)
T cd00814 14 VPHLGHL-YGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIE-------------------------------------- 54 (319)
T ss_pred CcchhhH-HHHHHHHHHHHHHHhCCCcccccCccCCCCcHHH--------------------------------------
Confidence 5899998 9999999999999999999976554445444321
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc-ccc--chhhhhHHHHHHHHHhcCCeeeecCc
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGE--SFYQKHMEQLVPYLEKKGNLSLTKKL 712 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~-~gE--S~y~~~~~~vi~~l~~~g~~~~~~~~ 712 (1119)
.+|. +.|- -++.+++.+.+.++++|++|||+||. ..+ +.+.+.+.++++.|.++|++++....
T Consensus 55 ---~~a~------~~g~-----~~~e~~~~~~~~~~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~ 120 (319)
T cd00814 55 ---QKAE------EEGV-----TPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYE 120 (319)
T ss_pred ---HHHH------HcCC-----CHHHHHHHHHHHHHHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeee
Confidence 1111 1221 14688999999999999999999994 333 34678999999999999999765433
No 80
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.79 E-value=0.00012 Score=95.55 Aligned_cols=132 Identities=14% Similarity=0.175 Sum_probs=94.9
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 411 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l 411 (1119)
++++.+|-..-||+||.|||||++|.++-|+++|..+..||+|...--...+|..+-.-+. ...+.
T Consensus 30 ~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~ve---k~l~~----------- 95 (974)
T PLN02843 30 NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVL---QSLDQ----------- 95 (974)
T ss_pred CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHH---HHhch-----------
Confidence 3566889999999999999999999999999999999999999999999999998864321 11110
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHH
Q psy6783 412 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQ 486 (1119)
Q Consensus 412 ~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~ 486 (1119)
+....+ ..++|.+.+++ +.+...+.+.+.+.+||++.|+.. .-.|...+..
T Consensus 96 -----~~~~~~-~~~~f~~~c~~------------------~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~ 151 (974)
T PLN02843 96 -----EARKEL-TPIKLRAKAAK------------------FAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIE 151 (974)
T ss_pred -----hhhccC-CHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHH
Confidence 000011 12345555543 333344556777899999766421 2345568999
Q ss_pred HHHHHHHCCCeEeeC
Q psy6783 487 LVPYLEKKGLLELDD 501 (1119)
Q Consensus 487 vi~~L~~kG~~~e~d 501 (1119)
++.+|.++|++|...
T Consensus 152 ~f~~l~~~GlIyr~~ 166 (974)
T PLN02843 152 VFGQMFLNGYIYRGR 166 (974)
T ss_pred HHHHHHHCCCEEecc
Confidence 999999999999743
No 81
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.75 E-value=0.00016 Score=79.70 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=22.9
Q ss_pred CCCCCCCccccccchhcHHHHHHHH
Q psy6783 342 SPNIAKEMHVGHLRSTIIGDTISRL 366 (1119)
Q Consensus 342 SpNptkpLHVGHlRsaiiGDsLari 366 (1119)
.|+|||+||+||+|++++.-..|+-
T Consensus 7 APsPtG~LHlG~~~~al~n~l~ar~ 31 (239)
T cd00808 7 APSPTGFLHIGGARTALFNYLFARK 31 (239)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH
Confidence 6999999999999999998888875
No 82
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00024 Score=89.49 Aligned_cols=130 Identities=19% Similarity=0.269 Sum_probs=94.1
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 413 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~ 413 (1119)
++..|.---||+||-|||||+=+..|=|+|+|..|-.||+|.-.-..+.+|..--+....
T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk-------------------- 92 (877)
T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEK-------------------- 92 (877)
T ss_pred CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHH--------------------
Confidence 558999999999999999999999999999999999999999999999998654433221
Q ss_pred HHHH-hcccCC-CcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccchh-----hhhHHHHH
Q psy6783 414 FYKE-SKKRFD-EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGES-----FYQKHMEQ 486 (1119)
Q Consensus 414 ~y~~-~~~~~~-~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~geS-----~y~~~v~~ 486 (1119)
.+.+ ...+.+ ..++|.+.+.++ .+.+...+..-..+||.++|+..|- .+...+++
T Consensus 93 ~l~~~g~~r~d~gRe~Fl~~~weW------------------k~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~ 154 (877)
T COG0525 93 QLAAEGITRHDLGREEFLKKCWEW------------------KEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQE 154 (877)
T ss_pred HHHHcCCCccccCHHHHHHHHHHH------------------HHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHH
Confidence 1110 011111 124454444332 2345566777788999998864442 23458999
Q ss_pred HHHHHHHCCCeEeeC
Q psy6783 487 LVPYLEKKGLLELDD 501 (1119)
Q Consensus 487 vi~~L~~kG~~~e~d 501 (1119)
++-+|-++|++|..+
T Consensus 155 ~Fv~Ly~~GlIYr~~ 169 (877)
T COG0525 155 AFVRLYEKGLIYRGE 169 (877)
T ss_pred HHHHHHHCCceeecC
Confidence 999999999999744
No 83
>PLN02959 aminoacyl-tRNA ligase
Probab=97.55 E-value=0.00039 Score=91.55 Aligned_cols=163 Identities=13% Similarity=0.136 Sum_probs=99.7
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHh---hcCCC--CCCCCC
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQD---KFPDY--LTKSPP 407 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~---r~~e~--~~~~~~ 407 (1119)
..+..|.+.=|++||+||+||++|-++.|+++|..+-.||+|....-..-.|..|-..+.-+.. .++.. ....+.
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~ 123 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDE 123 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccc
Confidence 3568999999999999999999999999999999999999999999999999999887765531 12210 000000
Q ss_pred hHHHHHHHHH--hcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-------------------HHHHHHHHHHh
Q psy6783 408 IADLQAFYKE--SKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICD-------------------VSRRDFQKIYD 466 (1119)
Q Consensus 408 i~~l~~~y~~--~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~-------------------~s~~~~~~~y~ 466 (1119)
..+-...-.. ....-....+|++.+++...+ .|+.+. .|+.+.+ ..-....+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k--~~~~~~--~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k 199 (1084)
T PLN02959 124 DEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAK--SGTQKY--QWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLK 199 (1084)
T ss_pred cccccccccccccccccccHHHHHHHHHHHHHH--hCCchH--HHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHH
Confidence 0000000000 000000113455555444332 122111 2221111 11234566788
Q ss_pred hcCcEEeccch-------hhhhHHHHHHHHHHHHCCCeEe
Q psy6783 467 RLNVTLTERGE-------SFYQKHMEQLVPYLEKKGLLEL 499 (1119)
Q Consensus 467 ~l~i~f~~~ge-------S~y~~~v~~vi~~L~~kG~~~e 499 (1119)
+||++.|+..+ -.|...+...+.+|.++|++|.
T Consensus 200 ~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~ 239 (1084)
T PLN02959 200 AFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVK 239 (1084)
T ss_pred HhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEe
Confidence 89988775321 2466679999999999999986
No 84
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=97.54 E-value=0.00046 Score=83.34 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=85.0
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
..|+||+ |+.|..|.++|.++..||+|.-+-=+-|.|...
T Consensus 34 ~~HiGha-r~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkI--------------------------------------- 73 (465)
T TIGR00435 34 YCHIGHA-RTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKI--------------------------------------- 73 (465)
T ss_pred Ccccccc-hHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHH---------------------------------------
Confidence 5799996 999999999999999999986543334433321
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc--cccchhhhhHHHHHHHHHhcCCeeeec-Cc
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEKKGNLSLTK-KL 712 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~--~gES~y~~~~~~vi~~l~~~g~~~~~~-~~ 712 (1119)
..+| .+.|- -|+.+++...+.|.+.|++|||.||. ..+|.|.+.+.++++.|.++|.++..+ +.
T Consensus 74 --i~~A------~~~g~-----~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~ 140 (465)
T TIGR00435 74 --IKRA------RENGE-----SVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGD 140 (465)
T ss_pred --HHHH------HHcCC-----CHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCc
Confidence 1111 12222 24678899999999999999999985 488888999999999999999999887 76
Q ss_pred eEEEEec
Q psy6783 713 GIVYVTD 719 (1119)
Q Consensus 713 ~~v~v~d 719 (1119)
+.+++..
T Consensus 141 vyfdv~~ 147 (465)
T TIGR00435 141 VYFDVSK 147 (465)
T ss_pred EEEeccc
Confidence 5555533
No 85
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=97.42 E-value=0.00051 Score=84.31 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=98.9
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhcccC-CCCCcccchhhhccc-cCCchhHHHHHHHHHHHHHHHhCCCcchh
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN-RNLDYVFSFDKMLDD-RGNTAVYLLYAYTRIASIARTAGINSEDL 1015 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~-r~~~~~Fd~d~~l~~-~gnt~~YlQYahARi~SIlrKa~~~~~~l 1015 (1119)
++|.++-.++..+ +.+..|..|++|.+|+.. ..++.+|+++.+.+. +.+..-++++.+.|+.+++.+.... .+
T Consensus 328 mSKS~Gn~i~~~d---~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~--~~ 402 (530)
T TIGR00398 328 MSKSLGNVVDPSD---LLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNG--VL 402 (530)
T ss_pred ecccCCceecHHH---HHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cC
Confidence 4555555555544 446689999999999865 699999999984432 2344558999999999999875211 01
Q ss_pred hhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccc
Q psy6783 1016 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077 (1119)
Q Consensus 1016 ~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~V 1077 (1119)
+ .....++.++.|+..|.++++.+..+.++++|+.+++++++++..+|.||+.++-
T Consensus 403 ~------~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kp 458 (530)
T TIGR00398 403 P------SEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKP 458 (530)
T ss_pred C------CCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0 1112346788899999999999999999999999999999999999999998754
No 86
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.39 E-value=0.00039 Score=83.96 Aligned_cols=109 Identities=21% Similarity=0.182 Sum_probs=86.5
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
..|+||+ |+.++.|.|+|.++..||+|.-+--+-|.|...
T Consensus 36 ~~HiGHa-r~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki--------------------------------------- 75 (463)
T PRK00260 36 YAHIGHA-RSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKI--------------------------------------- 75 (463)
T ss_pred Ccccccc-hhHHHHHHHHHHHHhcCCceEEeecCCCCcHHH---------------------------------------
Confidence 5799996 999999999999999999998766666654432
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccc-ccc-cccchhhhhHHHHHHHHHhcCCeeeecCce
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTE-RGESFYQKHMEQLVPYLEKKGNLSLTKKLG 713 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~-Fd~-~gES~y~~~~~~vi~~l~~~g~~~~~~~~~ 713 (1119)
..+|+ +.| ..|+.+++...+.|++.+++|||. .|. ...|.+.+.+.++++.|.++|.++...+.+
T Consensus 76 --~~~A~------~~g-----~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~V 142 (463)
T PRK00260 76 --IKRAN------EEG-----ESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDV 142 (463)
T ss_pred --HHHHH------HcC-----CCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeE
Confidence 11221 223 358999999999999999999995 465 566778899999999999999999987765
Q ss_pred EEEE
Q psy6783 714 IVYV 717 (1119)
Q Consensus 714 ~v~v 717 (1119)
..++
T Consensus 143 yfdv 146 (463)
T PRK00260 143 YFDV 146 (463)
T ss_pred EEec
Confidence 5443
No 87
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.03 Score=68.79 Aligned_cols=127 Identities=12% Similarity=0.098 Sum_probs=85.0
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhcccC-CCCCcccchhhhcccc-CC-chhHHHHHHHHHHHHHHHhCCCcch
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN-RNLDYVFSFDKMLDDR-GN-TAVYLLYAYTRIASIARTAGINSED 1014 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~-r~~~~~Fd~d~~l~~~-gn-t~~YlQYahARi~SIlrKa~~~~~~ 1014 (1119)
++|.++..+...++ .+..|.-+++|..++.. ..+|-+|+|+...+.- .+ -.-+..++ .|+.|...|.....
T Consensus 334 mSKSrG~~V~~~~~---~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~-~R~~~fi~k~~~g~-- 407 (558)
T COG0143 334 MSKSRGNVVDPDEL---LEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLA-NRTLGFINKYFDGV-- 407 (558)
T ss_pred ccccCCcEEeHHHH---HHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCCc--
Confidence 35555554444433 34588889999998765 4678999999887531 10 11122233 57777666652211
Q ss_pred hhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcc
Q psy6783 1015 LRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1075 (1119)
Q Consensus 1015 l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~ 1075 (1119)
++. ... ... +.+.+++..+..-.+.+..+.+..+-++-+.-+.+|+..-|+|.+..
T Consensus 408 vp~---~~~-~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~ 463 (558)
T COG0143 408 VPA---AGA-PDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQ 463 (558)
T ss_pred CCc---ccc-ccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 110 111 112 56777888888888888999999999999999999999999999876
No 88
>KOG2007|consensus
Probab=97.28 E-value=0.0027 Score=74.81 Aligned_cols=128 Identities=21% Similarity=0.267 Sum_probs=89.5
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHH-HcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLE-YLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 410 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~-~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~ 410 (1119)
++++|=.-.|.|-.--.-|+||+|+.|-=|.|.|+|+ +.||+|+-+.-|.|----| +
T Consensus 52 ~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKI---I------------------- 109 (586)
T KOG2007|consen 52 NGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKI---I------------------- 109 (586)
T ss_pred CCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHH---H-------------------
Confidence 5667888889999999999999999999999999999 9999999998888822211 1
Q ss_pred HHHHHHHhc-ccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcE---EeccchhhhhHHHHH
Q psy6783 411 LQAFYKESK-KRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT---LTERGESFYQKHMEQ 486 (1119)
Q Consensus 411 l~~~y~~~~-~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~---f~~~geS~y~~~v~~ 486 (1119)
..++ ..+.+.+ ..|.+.-...-++|..-+..|++- +. .--|.|-+.|-.
T Consensus 110 -----~RAr~~~m~e~~---------------------~~l~~~F~~~e~eF~~DM~~LnvLpPtv~-tRVSeyvp~II~ 162 (586)
T KOG2007|consen 110 -----KRARKEEMGEKP---------------------LSLSERFCYYEEEFLQDMAALNVLPPTVQ-TRVSEYVPQIIK 162 (586)
T ss_pred -----HHhhhhhhccch---------------------hhHHHHHHHHHHHHHHHHHHhCCCCCccc-chhhhchHHHHH
Confidence 1110 0011111 122222113446788888888873 22 124667677888
Q ss_pred HHHHHHHCCCeEeeCCCeEEEc
Q psy6783 487 LVPYLEKKGLLELDDGRKIMWG 508 (1119)
Q Consensus 487 vi~~L~~kG~~~e~dGA~~~~~ 508 (1119)
.|+++.++|++|..||.+..+.
T Consensus 163 fIqkIIdnG~aY~~dGsVYFdv 184 (586)
T KOG2007|consen 163 FIQKIIDNGYAYAVDGSVYFDV 184 (586)
T ss_pred HHHHHHhCCceeeeCCcEEEec
Confidence 8899999999999999855433
No 89
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.10 E-value=0.00045 Score=82.01 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=22.4
Q ss_pred CCCCCCCccccccchhcHHHHHHHHH
Q psy6783 342 SPNIAKEMHVGHLRSTIIGDTISRLL 367 (1119)
Q Consensus 342 SpNptkpLHVGHlRsaiiGDsLaril 367 (1119)
.|.|||+|||||+|+|++--..||-.
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~~ 30 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQQ 30 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHc
Confidence 69999999999999999877777643
No 90
>PLN02610 probable methionyl-tRNA synthetase
Probab=97.08 E-value=0.26 Score=63.53 Aligned_cols=131 Identities=11% Similarity=0.093 Sum_probs=79.4
Q ss_pred hhcccCCCCChhhhHHHHHH-Hhhhhhhhhhccc-CCCCCcccchhhhccc-cCCchhHHHHHHHHHHHHHHH----hCC
Q psy6783 938 KDKNRHTELTPTELSEAQQA-VAYGCIKYADLSH-NRNLDYVFSFDKMLDD-RGNTAVYLLYAYTRIASIART----AGI 1010 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~-v~~~ai~~~~L~~-~r~~~~~Fd~d~~l~~-~gnt~~YlQYahARi~SIlrK----a~~ 1010 (1119)
++|.++..++..++ .+. .|.=+++|++|+. ...+|.+|+|+.+... +.+=+==+--=-.|+-+++.+ .-
T Consensus 349 MSKS~GNvV~p~~~---i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~- 424 (801)
T PLN02610 349 FSKSKGVGVFGNDA---KDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGY- 424 (801)
T ss_pred ecCcCCcccCHHHH---HhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-
Confidence 45555555555443 343 7777999999965 4557888999876642 110000001112345555542 21
Q ss_pred CcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccc
Q psy6783 1011 NSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077 (1119)
Q Consensus 1011 ~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~V 1077 (1119)
. ..++ ... ....++.+..|+..+.+..+.+..+.+.++.+..++-+++++...|.|.+...-
T Consensus 425 ~-g~vp---~~~-~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kP 486 (801)
T PLN02610 425 G-SVIP---DAP-GAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 486 (801)
T ss_pred C-CcCC---Ccc-ccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 0 0011 000 000122345577888888888999999999999999999999999999987643
No 91
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.05 E-value=0.0018 Score=74.53 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=18.7
Q ss_pred CCCCCCCccccccchhcHHHHHHH
Q psy6783 342 SPNIAKEMHVGHLRSTIIGDTISR 365 (1119)
Q Consensus 342 SpNptkpLHVGHlRsaiiGDsLar 365 (1119)
.|+|||+||+||+|+|++--..||
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar 30 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR 30 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccchhHHHHHHHHHHh
Confidence 799999999999999999888887
No 92
>PLN02627 glutamyl-tRNA synthetase
Probab=97.05 E-value=0.0009 Score=81.04 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=28.1
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRL 366 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLari 366 (1119)
..+|.+=| .|.|||+|||||+|+|++--..||-
T Consensus 43 ~~~vr~RF-APSPTG~LHiG~aRtAL~n~l~Ar~ 75 (535)
T PLN02627 43 GGPVRVRF-APSPTGNLHVGGARTALFNYLFARS 75 (535)
T ss_pred CCceEEEe-CCCCCCCccHHHHHHHHHHHHHHHH
Confidence 45688888 6899999999999999998888873
No 93
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=97.03 E-value=0.0023 Score=80.57 Aligned_cols=128 Identities=13% Similarity=0.104 Sum_probs=84.7
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhccc-CCCCCcccchhhhccccCCc-hhHHHHHHHHHHHHHHHhCCCcchh
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSH-NRNLDYVFSFDKMLDDRGNT-AVYLLYAYTRIASIARTAGINSEDL 1015 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~-~r~~~~~Fd~d~~l~~~gnt-~~YlQYahARi~SIlrKa~~~~~~l 1015 (1119)
++|.++-.++..+ +.+..|.=+++|..++. ...+|.+|+|+.+.+.-.+. +--+--...|+.+.+.+.... .+
T Consensus 300 MSKS~GN~i~p~d---~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~--~~ 374 (648)
T PRK12267 300 MSKSKGNVVDPEE---LVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDG--EI 374 (648)
T ss_pred ecccCCcccCHHH---HHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC--cC
Confidence 4555555555544 34567888999999964 67889999999875421111 111222336766666653111 01
Q ss_pred hhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhccc
Q psy6783 1016 RVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1076 (1119)
Q Consensus 1016 ~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~ 1076 (1119)
+ .... ..+.+..|+..+....+.+..+.++++++..++-+++++...|.|.+.++
T Consensus 375 p-----~~~~-~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~k 429 (648)
T PRK12267 375 P-----APGN-VTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETA 429 (648)
T ss_pred C-----CCCC-CchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 0001 12345668888999999999999999999999999999999898888764
No 94
>KOG1149|consensus
Probab=96.95 E-value=0.0021 Score=74.46 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=24.9
Q ss_pred HcCCCCCCCCCceeeeeeEEECCCCcccccccCCe
Q psy6783 735 KAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDT 769 (1119)
Q Consensus 735 ~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~ 769 (1119)
..||.+| ++.|++ +++..|+.|.|.|+|.+
T Consensus 260 AfgW~pP---kFaHlp--Ll~n~d~sKLSKRqgD~ 289 (524)
T KOG1149|consen 260 AFGWQPP---KFAHLP--LLLNPDGSKLSKRQGDA 289 (524)
T ss_pred HhCCCCC---ceeeee--eeecCCcchhhhhcCcc
Confidence 3488665 899986 88999999999999954
No 95
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=96.88 E-value=0.0015 Score=72.01 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=23.9
Q ss_pred eCCCCCCCccccccchhcHHHHHHH
Q psy6783 341 SSPNIAKEMHVGHLRSTIIGDTISR 365 (1119)
Q Consensus 341 sSpNptkpLHVGHlRsaiiGDsLar 365 (1119)
..|.|||+||+||+|++++-+.+||
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar 30 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK 30 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999
No 96
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=96.76 E-value=0.0032 Score=81.95 Aligned_cols=123 Identities=26% Similarity=0.331 Sum_probs=83.3
Q ss_pred ccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHhcccCCCcHHH
Q psy6783 349 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIF 428 (1119)
Q Consensus 349 LHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~y~~~~~~~~~de~~ 428 (1119)
||+||+|+.++.|+++|..+..||+|....-..-.|..+-..+..+... ..+.. +.++... .. ..+++
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~-------~~~~~---~~~~~~~-gi-~~~~i 68 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARG-------DPETI---ELYKSLY-GI-PEEEL 68 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhcc-------chhHH---HHHHHHc-CC-CHHHH
Confidence 7999999999999999999999999999999999999987665443210 00110 1111100 01 11122
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHHHHHHHHCCCeEe
Q psy6783 429 KKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQLVPYLEKKGLLEL 499 (1119)
Q Consensus 429 ~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~vi~~L~~kG~~~e 499 (1119)
.+. +++ +.+++.....+.+.+.+||+++|+.. .-.|...+..++.+|.++|++|.
T Consensus 69 ~~f----------~~~------~~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 69 EKF----------KDP------EYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred HHh----------cCH------HHHHHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEec
Confidence 111 112 23455666778888999999988632 23556789999999999999986
No 97
>KOG0435|consensus
Probab=96.73 E-value=0.0037 Score=75.73 Aligned_cols=116 Identities=20% Similarity=0.297 Sum_probs=76.0
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
++|.++.- =|.|.|.|||||.|--.|-|+|||..+-+||+|+-=--.+-+|..--.-
T Consensus 57 k~KYiLsM-FPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENA---------------------- 113 (876)
T KOG0435|consen 57 KKKYILSM-FPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENA---------------------- 113 (876)
T ss_pred CCceEEEe-cCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhH----------------------
Confidence 34455543 4999999999999999999999999999999997543333333211100
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~v 487 (1119)
+.|+|-. -+.|.. .-++.+++-..+|++.||+.. +-.|...-+=+
T Consensus 114 -------------------------Aiergv~--P~sWT~---~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwi 163 (876)
T KOG0435|consen 114 -------------------------AIERGVH--PASWTI---NNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWI 163 (876)
T ss_pred -------------------------HHhcCCC--chhhhH---HHHHHHHHHHHHcCcccccccccccCCcchhHHHHHH
Confidence 0111100 012221 123456777888999998633 34566677788
Q ss_pred HHHHHHCCCeEeeC
Q psy6783 488 VPYLEKKGLLELDD 501 (1119)
Q Consensus 488 i~~L~~kG~~~e~d 501 (1119)
+=+|-++|++|..+
T Consensus 164 FlkLfe~GLAYq~E 177 (876)
T KOG0435|consen 164 FLKLFEKGLAYQAE 177 (876)
T ss_pred HHHHHHhhhhhccc
Confidence 88899999999744
No 98
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=96.65 E-value=0.007 Score=73.98 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=81.3
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
++|+||+ |+-++.|.|+|.++..|++|.-+--+-|+|...=.
T Consensus 15 ~~HiGh~-~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~------------------------------------- 56 (511)
T PRK11893 15 KPHIGHA-YTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQR------------------------------------- 56 (511)
T ss_pred Ccccchh-HHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHH-------------------------------------
Confidence 6899996 99999999999999999999887777777764310
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc-cccch--hhhhHHHHHHHHHhcCCeeeecCc
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESF--YQKHMEQLVPYLEKKGNLSLTKKL 712 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~-~gES~--y~~~~~~vi~~l~~~g~~~~~~~~ 712 (1119)
+| -+.|-+ .+.+++...+.|++..++|||.||. ..++. +.+.+.++++.|.++|.++...+.
T Consensus 57 ----~a------~~~g~~-----~~~~~~~~~~~~~~~l~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~ 121 (511)
T PRK11893 57 ----KA------EEAGIS-----PQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYE 121 (511)
T ss_pred ----HH------HHcCCC-----HHHHHHHHHHHHHHHHHHhCCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeee
Confidence 01 112222 2457788889999999999999994 45555 678999999999999999887654
No 99
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.028 Score=67.31 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=45.5
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchh
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~ 385 (1119)
..++|+ +..-|.|..|||..|-.+.||+++|.|+..|++|.-++..+|+-.
T Consensus 19 ~~~~v~-tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~ 69 (521)
T COG1384 19 DEYVVA-TGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP 69 (521)
T ss_pred CcEEEe-cCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcc
Confidence 346666 578899999999999999999999999999999999999999643
No 100
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=96.57 E-value=0.01 Score=68.17 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=78.8
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
..|+||+ |+.|+.|.|+|.++..|++|.-+-=.-+-|... .....+.+. ...+.++
T Consensus 14 ~~HiGH~-~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i---~~~a~~~~~--------------------~~~~~~~ 69 (312)
T cd00668 14 SLHLGHA-LTHIIADFIARYKRMRGYEVPFLPGWDTHGLPI---ELKAERKGG--------------------RKKKTIW 69 (312)
T ss_pred CcchhHH-HHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHH---HHHHHHhcC--------------------ccccccc
Confidence 5899997 999999999999999999996543332223211 000000000 0000111
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccccc--c-c--ccchhhhhHHHHHHHHHhcCCeeeec
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT--E-R--GESFYQKHMEQLVPYLEKKGNLSLTK 710 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd--~-~--gES~y~~~~~~vi~~l~~~g~~~~~~ 710 (1119)
..+-.+.++.+++--.+.+++..++|||.|| . . -+..|.+.+.++++.|.++|+++...
T Consensus 70 ----------------~~~~~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~ 133 (312)
T cd00668 70 ----------------IEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGT 133 (312)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeec
Confidence 1233456778888899999999999999999 2 2 22236789999999999999998865
Q ss_pred Cc
Q psy6783 711 KL 712 (1119)
Q Consensus 711 ~~ 712 (1119)
+.
T Consensus 134 ~~ 135 (312)
T cd00668 134 HP 135 (312)
T ss_pred ce
Confidence 54
No 101
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=96.53 E-value=0.017 Score=68.16 Aligned_cols=103 Identities=19% Similarity=0.212 Sum_probs=78.6
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
..|+||+ |+.|..|.|+|.++..||+|+-+-=+=|.|... -+
T Consensus 22 ~~HIGh~-r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKI---------------------------i~---------- 63 (384)
T PRK12418 22 ATHLGHA-ATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPL---------------------------LE---------- 63 (384)
T ss_pred CCccchh-HHHHHHHHHHHHHHHcCCceEEEEecCCcchHH---------------------------HH----------
Confidence 5699997 999999999999999999987654444544421 11
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcc-ccc-ccccchhhhhHHHHHHHHHhcCCeeeecC
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNV-TLT-ERGESFYQKHMEQLVPYLEKKGNLSLTKK 711 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V-~Fd-~~gES~y~~~~~~vi~~l~~~g~~~~~~~ 711 (1119)
+| -+.|-. |+.+++--.+.|.+.+++||| .+| +..-|.+.+.|.++++.|.++|.+++..+
T Consensus 64 ----~A------~~~G~~-----~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~ 126 (384)
T PRK12418 64 ----RA------ARDGVD-----WRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDD 126 (384)
T ss_pred ----HH------HHcCCC-----HHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 11 122322 567788888999999999998 677 45556678899999999999999998776
No 102
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=96.51 E-value=0.011 Score=68.67 Aligned_cols=121 Identities=16% Similarity=0.065 Sum_probs=82.4
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
..|+||+ |+.++.|.++|.++..|++|.-+-=.-|-|...-.. +.+.+..++
T Consensus 15 ~lHiGHa-~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~k---------------------------a~k~lg~~~ 66 (338)
T cd00818 15 LPHYGHA-LNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELK---------------------------VEKELGISG 66 (338)
T ss_pred CchHHHH-HHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHH---------------------------HHHHhCCCC
Confidence 5899997 999999999999999999996544344444432110 111100000
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc-----cccchhhhhHHHHHHHHHhcCCeeeec
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-----RGESFYQKHMEQLVPYLEKKGNLSLTK 710 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~-----~gES~y~~~~~~vi~~l~~~g~~~~~~ 710 (1119)
. ...-+-|-.+....++.+++-..+.|.+.+++|||.+|+ .-...|.+.+..+++.|.++|+++...
T Consensus 67 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~ 138 (338)
T cd00818 67 K--------KDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGY 138 (338)
T ss_pred C--------cchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccC
Confidence 0 000011234556678889999999999999999996652 244567889999999999999998776
Q ss_pred Cc
Q psy6783 711 KL 712 (1119)
Q Consensus 711 ~~ 712 (1119)
+.
T Consensus 139 ~~ 140 (338)
T cd00818 139 KV 140 (338)
T ss_pred Ce
Confidence 54
No 103
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=96.46 E-value=0.013 Score=69.38 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=81.1
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
.+|+||+ |+.++.|.++|-++..|++|.-+--.-+=|... .. + +.++.....
T Consensus 15 ~lHiGH~-~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pi---------------------e~----~--a~k~~~~~~ 66 (382)
T cd00817 15 SLHMGHA-LNNTIQDIIARYKRMKGYNVLWPPGTDHAGIAT---------------------QV----V--VEKKLGIEG 66 (382)
T ss_pred cchHHHH-HHHHHHHHHHHHHHhcCCcccccCccCCCCChH---------------------HH----H--HHHHhcccc
Confidence 5899998 999999999999999999996654333333321 11 0 001000000
Q ss_pred HHHHHHHHHHHHhh-cCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc-----cccchhhhhHHHHHHHHHhcCCeeee
Q psy6783 636 IFKKRAYQCVVALQ-RFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-----RGESFYQKHMEQLVPYLEKKGNLSLT 709 (1119)
Q Consensus 636 ~~~~~a~~~~~~le-~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~-----~gES~y~~~~~~vi~~l~~~g~~~~~ 709 (1119)
...+ -+-++.+...+.+++-..+.+++.+++|||.||+ .-+..|.+.+..++..|.++|.++..
T Consensus 67 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 136 (382)
T cd00817 67 ----------KTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRD 136 (382)
T ss_pred ----------cchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEee
Confidence 0001 1223334556778888899999999999999983 23344678889999999999999887
Q ss_pred cCceE
Q psy6783 710 KKLGI 714 (1119)
Q Consensus 710 ~~~~~ 714 (1119)
...+.
T Consensus 137 ~~~~~ 141 (382)
T cd00817 137 NRLVN 141 (382)
T ss_pred eeEEe
Confidence 65543
No 104
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=96.36 E-value=0.0014 Score=72.10 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=28.2
Q ss_pred HHHHHhhcCcEEec-cchhhhhHHHHHHHHHHHHCCCeEe
Q psy6783 461 FQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGLLEL 499 (1119)
Q Consensus 461 ~~~~y~~l~i~f~~-~geS~y~~~v~~vi~~L~~kG~~~e 499 (1119)
+.+....||+..|+ .-.|.+.+.-.+++++|.++|.+|.
T Consensus 56 I~~dL~wlGl~wD~~~~QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 56 IKEDVKWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred HHHHHHHcCCCCCCceecccCHHHHHHHHHHHHHcCCeec
Confidence 44456667776653 2346666778899999999999998
No 105
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=96.35 E-value=0.029 Score=73.00 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHH-HHhhhh
Q psy6783 1028 HEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTA-FSEFYD 1073 (1119)
Q Consensus 1028 ~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~-F~~FY~ 1073 (1119)
.+.+..|+..|..+.+.+..+.++++++..++++++++.. |++||-
T Consensus 694 ~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi 740 (861)
T TIGR00392 694 PEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYI 740 (861)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999999999999877 888883
No 106
>PLN02224 methionine-tRNA ligase
Probab=96.34 E-value=0.016 Score=72.41 Aligned_cols=106 Identities=14% Similarity=0.280 Sum_probs=81.2
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
..|+||+ |+++++|.|+|.++..|++|.-+-.+.|.|.+.-.-+
T Consensus 83 ~~HiGHa-~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A----------------------------------- 126 (616)
T PLN02224 83 PPHMGSA-YTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSA----------------------------------- 126 (616)
T ss_pred CCchhcc-HHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHH-----------------------------------
Confidence 6899998 9999999999999999999999999999887653211
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc---cccchhhhhHHHHHHHHHhcCCeeeecCc
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSLTKKL 712 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~---~gES~y~~~~~~vi~~l~~~g~~~~~~~~ 712 (1119)
-+.|..- +.+|+--...|++.+++|||+||. .-+-.|.+.+.++...|-++|.++.....
T Consensus 127 ------------~~~g~~p-----~e~~~~~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~ 189 (616)
T PLN02224 127 ------------AANGRNP-----PEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYE 189 (616)
T ss_pred ------------HHcCCCh-----HHHHHHHHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeee
Confidence 0112210 235555567889999999999994 23445778899999999999999876544
Q ss_pred eE
Q psy6783 713 GI 714 (1119)
Q Consensus 713 ~~ 714 (1119)
+.
T Consensus 190 ~~ 191 (616)
T PLN02224 190 GL 191 (616)
T ss_pred ee
Confidence 43
No 107
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=96.33 E-value=0.017 Score=66.49 Aligned_cols=104 Identities=18% Similarity=0.155 Sum_probs=78.1
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
..|+||+ |+.+++|.|+|.++..|++|.-+.-+-|.|...=
T Consensus 14 ~~HiGH~-~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~-------------------------------------- 54 (314)
T cd00812 14 ALHVGHV-RTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAE-------------------------------------- 54 (314)
T ss_pred Cccccch-HHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHH--------------------------------------
Confidence 6899998 9999999999999999999987776777665421
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccccccc-----ccchhhhhHHHHHHHHHhcCCeeeec
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GESFYQKHMEQLVPYLEKKGNLSLTK 710 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~-----gES~y~~~~~~vi~~l~~~g~~~~~~ 710 (1119)
..|+ +.|- -.+.+++.-.+.+++.+++|||.+|.. ....|.+.+..+...|.++|.++...
T Consensus 55 ---~~a~------~~g~-----~~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~ 120 (314)
T cd00812 55 ---NAAI------KIGR-----DPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKE 120 (314)
T ss_pred ---HHHH------HcCC-----CHHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecC
Confidence 0111 1121 146788888999999999999999831 22224567777778999999999876
Q ss_pred Cc
Q psy6783 711 KL 712 (1119)
Q Consensus 711 ~~ 712 (1119)
+.
T Consensus 121 ~~ 122 (314)
T cd00812 121 AP 122 (314)
T ss_pred ce
Confidence 54
No 108
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=96.32 E-value=0.0018 Score=72.84 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=28.3
Q ss_pred HHHHHhhcCcEEec--cchhhhhHHHHHHHHHHHHCCCeEe
Q psy6783 461 FQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEKKGLLEL 499 (1119)
Q Consensus 461 ~~~~y~~l~i~f~~--~geS~y~~~v~~vi~~L~~kG~~~e 499 (1119)
+.+....||+..|+ .-.|.+-+.-.+++++|.++|.+|.
T Consensus 55 I~~dL~wLGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 55 ILRTLEAYGLHWDGEVVYQSQRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred HHHHHHHcCCCCCCCeeeeeCCHHHHHHHHHHHHHcCCEEe
Confidence 44446677777664 2356666778899999999999984
No 109
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=96.24 E-value=0.0079 Score=73.80 Aligned_cols=32 Identities=31% Similarity=0.573 Sum_probs=27.6
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISR 365 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLar 365 (1119)
+.+|+. ...|+|||+||+||+|++++-+.+||
T Consensus 99 ~g~V~t-RFaPsPtG~LHIGharaalln~~~Ar 130 (567)
T PRK04156 99 KGKVVM-RFAPNPSGPLHLGHARAAILNDEYAK 130 (567)
T ss_pred CCeEEE-EeCCCCCCCccHHHHHHHHHHHHHHH
Confidence 334555 46999999999999999999999999
No 110
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=96.23 E-value=0.0016 Score=71.42 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCCCCCCccccccchhcHHHHHHHHH
Q psy6783 342 SPNIAKEMHVGHLRSTIIGDTISRLL 367 (1119)
Q Consensus 342 SpNptkpLHVGHlRsaiiGDsLaril 367 (1119)
.|+|||+||+||+|++++--..||-.
T Consensus 7 APsPtG~lHlG~~r~al~n~l~Ar~~ 32 (230)
T cd00418 7 APSPTGYLHIGHARTALFNFAFARKY 32 (230)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHc
Confidence 79999999999999999988777754
No 111
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=96.18 E-value=0.019 Score=69.31 Aligned_cols=125 Identities=21% Similarity=0.149 Sum_probs=86.4
Q ss_pred EEEEeecC--cccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHH
Q psy6783 547 IVYVTDLG--QGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624 (1119)
Q Consensus 547 iIyVv~~~--Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y 624 (1119)
-+||-|-. =..|+||+ |+.|.-|.|+|.++..|++|+-+-=+=|.|.-.|.- +
T Consensus 23 ~mY~CGpTVYd~~HiGh~-r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~----------D-------------- 77 (481)
T PRK14534 23 KVYACGPTVYNYAHIGNF-RTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDF----------D-------------- 77 (481)
T ss_pred EEEeCCCCCCCCCCccch-hHHHHHHHHHHHHHHcCCceEEEEeccccccccCCc----------c--------------
Confidence 46766631 13699997 999999999999999999998643334555332210 0
Q ss_pred HHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc--cccchhhhhHHHHHHHHHh
Q psy6783 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEK 702 (1119)
Q Consensus 625 ~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~--~gES~y~~~~~~vi~~l~~ 702 (1119)
+.|+-+..+| -+.|-+ |..+++-=.+.|.+.+++|||.++. .-.+.+.+.|.++++.|.+
T Consensus 78 -------~gddKIi~~A------~~~g~~-----~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~ 139 (481)
T PRK14534 78 -------DGEDKVVKAA------RERGLT-----VYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEE 139 (481)
T ss_pred -------CCCcHHHHHH------HHcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHHH
Confidence 0111122222 122333 5677777789999999999999984 3456678899999999999
Q ss_pred cCCeeeecCceE
Q psy6783 703 KGNLSLTKKLGI 714 (1119)
Q Consensus 703 ~g~~~~~~~~~~ 714 (1119)
+|.++...+.+.
T Consensus 140 kG~aY~~~~~vy 151 (481)
T PRK14534 140 NGFTYFVNGNVY 151 (481)
T ss_pred CCCEEEECCeEE
Confidence 999998876533
No 112
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=96.16 E-value=0.031 Score=66.38 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=77.0
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
..|+||+ |+.|..|.|+|.++..||+|.-+==+=|.|... -.++
T Consensus 49 ~~HIGha-rt~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKI---------------------------i~~A-------- 92 (411)
T TIGR03447 49 ATHLGHA-ATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPL---------------------------FERA-------- 92 (411)
T ss_pred Ccccccc-hHHHHHHHHHHHHHhcCCceEEeeCCCchhHHH---------------------------HHHH--------
Confidence 5799997 999999999999999999997543344444321 1111
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccc-cc-ccccchhhhhHHHHHHHHHhcCCeeeecC
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LT-ERGESFYQKHMEQLVPYLEKKGNLSLTKK 711 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~-Fd-~~gES~y~~~~~~vi~~l~~~g~~~~~~~ 711 (1119)
-++|-. |+.+++--...|.+.+++|||. +| +..-|.+.+.+.+.++.|.++|.++..+|
T Consensus 93 ------------~~~g~t-----~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~ 153 (411)
T TIGR03447 93 ------------ERDGVD-----WRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEG 153 (411)
T ss_pred ------------HHcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 112222 4566777788999999999986 66 45666668999999999999999998765
No 113
>KOG0432|consensus
Probab=96.12 E-value=0.039 Score=69.08 Aligned_cols=53 Identities=21% Similarity=0.373 Sum_probs=44.9
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchh
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~ 385 (1119)
+...++=---||.||.||+||+=...|=|+|+|.-+..||.|.-.=-++=+|.
T Consensus 74 ~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGI 126 (995)
T KOG0432|consen 74 GGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGI 126 (995)
T ss_pred CCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccch
Confidence 44556667789999999999999999999999999999998877666666653
No 114
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.083 Score=63.13 Aligned_cols=118 Identities=21% Similarity=0.177 Sum_probs=83.2
Q ss_pred EEEEEeecCc--ccchhhhhhhhhhHHHHHHHHHHcCCcee-eecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHH
Q psy6783 546 WIVYVTDLGQ--GVHFRLLEESTIIGDTISRLLEYLGHDVV-RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 622 (1119)
Q Consensus 546 ~iIyVv~~~Q--~~H~~~~~RStIIG~~l~~l~~~~G~~V~-r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~ 622 (1119)
--+||-|-.= ..|+||. |+-|--|.|.|+|+++||.|. .+|.+ | |
T Consensus 23 V~mYvCGpTVYd~~HIGha-Rt~V~fDvl~R~L~~~Gy~V~yV~NiT-D-------------------------I----- 70 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHA-RTYVVFDVLRRYLRYLGYKVTYVRNIT-D-------------------------I----- 70 (464)
T ss_pred EEEEecCCccCCccccccC-cceehHHHHHHHHHHhCCeEEEEeccc-c-------------------------c-----
Confidence 3467666321 3499995 999999999999999999643 33432 1 0
Q ss_pred HHHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccc-ccc-cccchhhhhHHHHHHHH
Q psy6783 623 FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTE-RGESFYQKHMEQLVPYL 700 (1119)
Q Consensus 623 ~Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~-Fd~-~gES~y~~~~~~vi~~l 700 (1119)
+|+++.. +.|+|- -|+.+.+-=+.+|.+-.+.|||. =|. -.-+.|.+.|-+.|+.|
T Consensus 71 ----------DDKIi~r-------A~~~g~-----~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~L 128 (464)
T COG0215 71 ----------DDKIINR-------AREEGL-----SIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKL 128 (464)
T ss_pred ----------cHHHHHH-------HHHhCC-----CHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHH
Confidence 1222221 123332 47788888899999999999994 464 56677889999999999
Q ss_pred HhcCCeeeec-CceEEEE
Q psy6783 701 EKKGNLSLTK-KLGIVYV 717 (1119)
Q Consensus 701 ~~~g~~~~~~-~~~~v~v 717 (1119)
.++|.++..+ |.+..+|
T Consensus 129 iekG~AY~~~~G~VYFdv 146 (464)
T COG0215 129 IEKGYAYVADDGDVYFDV 146 (464)
T ss_pred HHCCceEEecCCcEEEec
Confidence 9999999985 4433334
No 115
>PLN02946 cysteine-tRNA ligase
Probab=95.99 E-value=0.043 Score=67.49 Aligned_cols=119 Identities=14% Similarity=0.040 Sum_probs=86.1
Q ss_pred EEEEEeecC--cccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHH
Q psy6783 546 WIVYVTDLG--QGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 623 (1119)
Q Consensus 546 ~iIyVv~~~--Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~ 623 (1119)
--+||-|-. -..|+||+ |+.|..|.|+|.++..||+|+-+-=+=|+|...
T Consensus 81 v~~Y~CGpTvYd~~HIGha-R~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKI--------------------------- 132 (557)
T PLN02946 81 VGMYVCGVTAYDLSHIGHA-RVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKI--------------------------- 132 (557)
T ss_pred eeEEEeCCccCCCCccccc-hhhHHHHHHHHHHHhcCCcEEEEECCCCccCHH---------------------------
Confidence 346776632 14599997 999999999999999999997654444544321
Q ss_pred HHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc--cccchhhhhHHHHHHHHH
Q psy6783 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLE 701 (1119)
Q Consensus 624 Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~--~gES~y~~~~~~vi~~l~ 701 (1119)
. .+|+ +.|- -|..+.+--.+.|.+.+++|||.... --.|.+.+.|.++++.|.
T Consensus 133 -------------i-~~A~------~~g~-----~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li 187 (557)
T PLN02946 133 -------------I-ARAN------ELGE-----DPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQIL 187 (557)
T ss_pred -------------H-HHHH------HcCC-----CHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHH
Confidence 1 1111 1222 25677777888999999999998443 467778899999999999
Q ss_pred hcCCeeeecCceEEEE
Q psy6783 702 KKGNLSLTKKLGIVYV 717 (1119)
Q Consensus 702 ~~g~~~~~~~~~~v~v 717 (1119)
++|.++..++.+...|
T Consensus 188 ~kG~aY~~~g~VYFdv 203 (557)
T PLN02946 188 DNGCAYRVDGDVYFSV 203 (557)
T ss_pred HCCCEEEECCeEEEec
Confidence 9999998876544433
No 116
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=95.90 E-value=0.011 Score=72.62 Aligned_cols=31 Identities=29% Similarity=0.641 Sum_probs=27.1
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISR 365 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLar 365 (1119)
.+|+.=| .|+|||+|||||+|++++-..+|+
T Consensus 92 ~~vvtRF-aPsPtG~LHiGharaalln~~~Ar 122 (560)
T TIGR00463 92 GEVVMRF-APNPSGPLHIGHARAAILNQYFAK 122 (560)
T ss_pred CeeEEEe-CCCCCCCccHHHHHHHHHHHHHHH
Confidence 3566666 799999999999999999988886
No 117
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=95.81 E-value=0.14 Score=66.90 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHH-HHHHhhhhc
Q psy6783 1028 HEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS-TAFSEFYDN 1074 (1119)
Q Consensus 1028 ~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA-~~F~~FY~~ 1074 (1119)
++.++-++..|....+.+..+.++++++..++++++++ ..|..||-+
T Consensus 600 ~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle 647 (874)
T PRK05729 600 SLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLE 647 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788899999999999999999999999999999 689999854
No 118
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=95.80 E-value=0.0047 Score=75.73 Aligned_cols=34 Identities=21% Similarity=0.510 Sum_probs=28.2
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLL 367 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril 367 (1119)
+.+|+.=| .|+|||+|||||+|++++-.-+||-.
T Consensus 50 ~~~v~tRF-APsPtGyLHIGharaAllN~l~Ar~~ 83 (601)
T PTZ00402 50 EGKVVTRF-PPEASGFLHIGHAKAALINSMLADKY 83 (601)
T ss_pred CCeeEEee-CCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 34576666 79999999999999999988888743
No 119
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=95.79 E-value=0.04 Score=69.83 Aligned_cols=123 Identities=11% Similarity=0.080 Sum_probs=94.1
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCC--CcccchhhhccccCCch---hHHHHHHHHHHHHHHHhCCCc
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNL--DYVFSFDKMLDDRGNTA---VYLLYAYTRIASIARTAGINS 1012 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~--~~~Fd~d~~l~~~gnt~---~YlQYahARi~SIlrKa~~~~ 1012 (1119)
++|.++-.++..++ .+..|.-|++|.+|+..+.. |.+|+|+.+.. ..|+. .|-+|.+ |+++++++....
T Consensus 330 MSKS~GNvV~p~dl---ie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~-~~n~~l~~~l~Nl~~-R~~~~~~k~~~~- 403 (673)
T PRK00133 330 MSKSRGTFIWARTY---LDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQ-RVNSELVGKVVNFAS-RTAGFINKRFDG- 403 (673)
T ss_pred ccccCCcccCHHHH---HHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHhcCC-
Confidence 45555555555444 45688899999999888765 99999998643 23333 3788888 999999875211
Q ss_pred chhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccc
Q psy6783 1013 EDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077 (1119)
Q Consensus 1013 ~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~V 1077 (1119)
. .. ..+.++.|+..|.++++.+.++.++++|+.++++++++++.+|.|++.++-
T Consensus 404 -~---------~~-~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kp 457 (673)
T PRK00133 404 -K---------LP-DALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEP 457 (673)
T ss_pred -C---------CC-CCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 01 124478899999999999999999999999999999999999999988753
No 120
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=95.78 E-value=0.039 Score=67.04 Aligned_cols=126 Identities=19% Similarity=0.165 Sum_probs=86.8
Q ss_pred EEEEeecC--cccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHH
Q psy6783 547 IVYVTDLG--QGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624 (1119)
Q Consensus 547 iIyVv~~~--Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y 624 (1119)
-+||-|-. =..|+||+ |+.|.-|.|+|.++..||+|+-+-=+=|.|...| +..
T Consensus 25 ~mYvCGpTvy~~~HiGha-r~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~----~~D-------------------- 79 (490)
T PRK14536 25 RLYGCGPTVYNYAHIGNL-RTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTD----DAD-------------------- 79 (490)
T ss_pred EEEeeCCccCCCcccchh-HHHHHHHHHHHHHHhcCCceEEEEeecccccccc----CCc--------------------
Confidence 45665531 15699997 9999999999999999999986543445542211 100
Q ss_pred HHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccccc-c-cccchhhhhHHHHHHHHHh
Q psy6783 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT-E-RGESFYQKHMEQLVPYLEK 702 (1119)
Q Consensus 625 ~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd-~-~gES~y~~~~~~vi~~l~~ 702 (1119)
+.|+.+..+|+ +.|-. |+.+++-=.+.|.+.+++|||.++ . ---+.+.+.+.++++.|.+
T Consensus 80 -------e~ddKii~~A~------~~g~~-----~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~ 141 (490)
T PRK14536 80 -------SGEDKMVKSAQ------EHGKS-----VLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEA 141 (490)
T ss_pred -------CCChHHHHHHH------HcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHHHH
Confidence 11222222221 22322 467777788899999999999996 3 3447788999999999999
Q ss_pred cCCeeeecCceEE
Q psy6783 703 KGNLSLTKKLGIV 715 (1119)
Q Consensus 703 ~g~~~~~~~~~~v 715 (1119)
+|.++...+.+..
T Consensus 142 kG~aY~~~~~vyF 154 (490)
T PRK14536 142 RGHTYCAGGNVYF 154 (490)
T ss_pred CCCEEEECCeEEE
Confidence 9999987765333
No 121
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=95.75 E-value=0.0058 Score=73.55 Aligned_cols=40 Identities=15% Similarity=-0.028 Sum_probs=29.8
Q ss_pred HHHHHhhcCcEEec--cchhhhhHHHHHHHHHHHHCCCeEee
Q psy6783 461 FQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEKKGLLELD 500 (1119)
Q Consensus 461 ~~~~y~~l~i~f~~--~geS~y~~~v~~vi~~L~~kG~~~e~ 500 (1119)
..+....||+.-++ .-.|.+-+.-.+++++|.++|.+|..
T Consensus 64 I~~~L~WLGl~wde~~~~QS~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 64 ILEDLEWLGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred HHHHHHhcCCCCCCceeehhhhHHHHHHHHHHHHHCCCeEEe
Confidence 34446777776654 34677778889999999999999863
No 122
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=95.75 E-value=0.0053 Score=74.47 Aligned_cols=33 Identities=21% Similarity=0.523 Sum_probs=27.6
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLL 367 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril 367 (1119)
.+|+.=| .|+|||+||+||+|++++-..+||-.
T Consensus 10 g~v~tRF-APsPtG~LHiGharaAlln~l~Ar~~ 42 (523)
T PLN03233 10 GQIVTRF-PPEPSGYLHIGHAKAALLNDYYARRY 42 (523)
T ss_pred CeEEEee-CCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 4566666 79999999999999999988888743
No 123
>PLN02907 glutamate-tRNA ligase
Probab=95.71 E-value=0.0054 Score=77.53 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=27.9
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRL 366 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLari 366 (1119)
.+|+.=| .|+|||+|||||+|++++-..+||-
T Consensus 212 ~~v~tRF-aPsPtG~LHiG~ar~al~n~~~Ar~ 243 (722)
T PLN02907 212 GKVCTRF-PPEPSGYLHIGHAKAALLNQYFARR 243 (722)
T ss_pred CceEEee-CCCCCCcccHHHHHHHHHHHHHHHH
Confidence 4576666 7999999999999999999988884
No 124
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=95.68 E-value=0.059 Score=63.97 Aligned_cols=107 Identities=21% Similarity=0.406 Sum_probs=74.0
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
.+|+||+. +++.+|.++|.++..|++|.-+--+-+-|+..-. +|.+
T Consensus 13 ~lHlGH~~-~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~---------------------------~A~~------ 58 (391)
T PF09334_consen 13 DLHLGHLY-PYLAADVLARYLRLRGHDVLFVTGTDEHGSKIET---------------------------AAEK------ 58 (391)
T ss_dssp S-BHHHHH-HHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHH---------------------------HHHH------
T ss_pred CCCCChhH-HHHHHHHHHHHHhhcccceeeEEecchhhHHHHH---------------------------HHHH------
Confidence 69999996 9999999999999999999776555555554311 1111
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc---cccchhhhhHHHHHHHHHhcCCeeeecCc
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGNLSLTKKL 712 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~---~gES~y~~~~~~vi~~l~~~g~~~~~~~~ 712 (1119)
++-+| +.+++---..|++.++++||+||. .-++.+.+...++.+.|.++|.+....-.
T Consensus 59 -------------~g~~p------~~~~~~~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~ 119 (391)
T PF09334_consen 59 -------------QGIDP------EEFCDKYSAKFKELLEALNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYE 119 (391)
T ss_dssp -------------TTS-H------HHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred -------------cCCCH------HHHHHHHHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccc
Confidence 12233 356666778899999999999994 34556778999999999999998876555
Q ss_pred eEE
Q psy6783 713 GIV 715 (1119)
Q Consensus 713 ~~v 715 (1119)
+.+
T Consensus 120 ~~Y 122 (391)
T PF09334_consen 120 GWY 122 (391)
T ss_dssp EEE
T ss_pred eeE
Confidence 443
No 125
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=95.65 E-value=0.007 Score=73.71 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=28.2
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLL 367 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril 367 (1119)
.+|+.=| .|+|||+||+||+|++++-..+||-.
T Consensus 50 gkv~tRF-aPsPtG~LHiGharaalln~~~Ar~~ 82 (574)
T PTZ00437 50 GKPYFRF-PPEPNGFLHIGHAKSMNLNFGSARAH 82 (574)
T ss_pred CcEEEEe-CCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 3577777 79999999999999999988888754
No 126
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=95.64 E-value=0.044 Score=67.88 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=93.3
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCC-CCCcccchhhhccccCCch---hHHHHHHHHHHHHHHHhCCCcc
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLDYVFSFDKMLDDRGNTA---VYLLYAYTRIASIARTAGINSE 1013 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r-~~~~~Fd~d~~l~~~gnt~---~YlQYahARi~SIlrKa~~~~~ 1013 (1119)
++|.++-.++..+ +.+..|.-|++|.+|+..+ ..+++|+++.+.. ..|+. .+.+|+ .|+++++++.....
T Consensus 335 MSKS~GN~I~p~d---li~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~-~~~~~~~~~l~n~~-~r~~~~~~~~~~~~- 408 (556)
T PRK12268 335 FSKSRGWGIWVDD---ALERYPPDYLRYYLAANAPENSDTDFTWEEFVR-RVNSELADKYGNLV-NRVLSFIEKYFGGI- 408 (556)
T ss_pred eccCCCcccCHHH---HHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHH-HHhHHhhhhHHHHH-HHHHHHHHHhcCCc-
Confidence 4555555555443 4466888999999998765 4889999998543 33332 478888 69999998752110
Q ss_pred hhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccc
Q psy6783 1014 DLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077 (1119)
Q Consensus 1014 ~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~V 1077 (1119)
++ . ...++.++.|+..|..+++.+.++.++++++.++.+++++++.+|.|++..+-
T Consensus 409 -~~------~-~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kp 464 (556)
T PRK12268 409 -VP------P-GELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAP 464 (556)
T ss_pred -CC------C-CcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 00 1 11245678899999999999999999999999999999999999999986653
No 127
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=95.62 E-value=0.0035 Score=71.36 Aligned_cols=39 Identities=13% Similarity=0.053 Sum_probs=28.1
Q ss_pred HHHHHhhcCcEEec--cchhhhhHHHHHHHHHHHHCCCeEe
Q psy6783 461 FQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEKKGLLEL 499 (1119)
Q Consensus 461 ~~~~y~~l~i~f~~--~geS~y~~~v~~vi~~L~~kG~~~e 499 (1119)
+.+.+..||+..|+ .-.|.+-+.-.+++++|.++|.+|.
T Consensus 60 I~~dL~wlGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 60 ILADLEWLGLHWDGPVLYQSQRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred HHHHHHHCCCCCCCCceEeeccHHHHHHHHHHHHHCCCcee
Confidence 44456677777663 2345556778899999999999984
No 128
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=95.61 E-value=0.073 Score=66.33 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=83.5
Q ss_pred EEEEeecC--cccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHH
Q psy6783 547 IVYVTDLG--QGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624 (1119)
Q Consensus 547 iIyVv~~~--Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y 624 (1119)
-+||-|-. =..|+||+ |+.|..|.|+|.++..||+|+-+-=+=|.|...
T Consensus 250 ~mYvCGPTVYd~~HIGHa-Rt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKI---------------------------- 300 (699)
T PRK14535 250 RMYVCGMTVYDYCHLGHA-RVMVVFDMIARWLRECGYPLTYVRNITDIDDKI---------------------------- 300 (699)
T ss_pred EEEecCCcCCCCCcccch-hHHHHHHHHHHHHHHcCCceEEEeCCcccchHH----------------------------
Confidence 35665531 14599997 999999999999999999997543334433321
Q ss_pred HHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc--cccchhhhhHHHHHHHHHh
Q psy6783 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEK 702 (1119)
Q Consensus 625 ~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~--~gES~y~~~~~~vi~~l~~ 702 (1119)
+. +|+ +.|-. |+.+++-=.+.|.+-+++|||.++. --.+.+.+.|.++++.|.+
T Consensus 301 ------------I~-~A~------e~G~s-----p~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~~Lid 356 (699)
T PRK14535 301 ------------IA-RAA------ENGET-----IGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMIETLIQ 356 (699)
T ss_pred ------------HH-HHH------HcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHHHHHH
Confidence 11 111 12222 5567777788999999999999984 4567788999999999999
Q ss_pred cCCeeee-cCceEEEE
Q psy6783 703 KGNLSLT-KKLGIVYV 717 (1119)
Q Consensus 703 ~g~~~~~-~~~~~v~v 717 (1119)
+|.++.. .|.+...|
T Consensus 357 kG~AYe~~~gsVYFdV 372 (699)
T PRK14535 357 NGKAYPAANGDVYYAV 372 (699)
T ss_pred CCCEEEeCCCCEEEec
Confidence 9999976 44433333
No 129
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=95.60 E-value=0.013 Score=74.31 Aligned_cols=51 Identities=27% Similarity=0.403 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHH
Q psy6783 309 SRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLL 367 (1119)
Q Consensus 309 ~~~~~~~~l~~il~~g~~~~~~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril 367 (1119)
++.|+...+.+=+..|. ..+|+.=| .|+|||+||+||+|++++-..+|+-.
T Consensus 12 ~~~f~~~~~~~~l~~g~-------~~~v~tRF-aPsPtG~lHiGhar~alln~~~A~~~ 62 (771)
T PRK14703 12 SPNFITEIIEEDLEAGR-------YPRVVTRF-PPEPNGYLHIGHAKSILLNFGIARDY 62 (771)
T ss_pred chhHHHHHHHHHHhcCC-------CCceEEEe-CcCCCCcccHHHHHHHHHHHHHHHHh
Confidence 34556666554444442 22466666 79999999999999999988888753
No 130
>KOG0436|consensus
Probab=95.49 E-value=3.8 Score=48.34 Aligned_cols=116 Identities=15% Similarity=0.070 Sum_probs=69.2
Q ss_pred HHHHHhhhhhhhhhcccCC-CCCcccchhhhcccc-CCchhHHHHHHHHHHH--HHHHhCCCcchhhhhccCCCCCCCCH
Q psy6783 954 AQQAVAYGCIKYADLSHNR-NLDYVFSFDKMLDDR-GNTAVYLLYAYTRIAS--IARTAGINSEDLRVAAQSTPVSLEHE 1029 (1119)
Q Consensus 954 ~~~~v~~~ai~~~~L~~~r-~~~~~Fd~d~~l~~~-gnt~~YlQYahARi~S--IlrKa~~~~~~l~~~~~~~~~~L~~~ 1029 (1119)
.++.-|.-+|+|+.|++.+ ..|=+|+-++..+.. ..-+--+=--..|||+ ++-+-.+. .+ ..+......
T Consensus 358 l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~--~l-----~~~s~~v~a 430 (578)
T KOG0436|consen 358 LVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCES--TL-----VVDSPTVAA 430 (578)
T ss_pred HHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhcccc--cc-----ccCCcchhh
Confidence 4567888899999998754 455566655554421 0000001111234443 21111000 00 011111122
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhccc
Q psy6783 1030 KEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1076 (1119)
Q Consensus 1030 ~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~ 1076 (1119)
+-..|...+...|++..+-.....-..+++.+..+..+-|.|.+...
T Consensus 431 e~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~a 477 (578)
T KOG0436|consen 431 EGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQRA 477 (578)
T ss_pred ccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhhhhcC
Confidence 33457889999999999999999999999999999999999997653
No 131
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=95.45 E-value=0.016 Score=70.61 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=27.2
Q ss_pred EEEEEeeCCCCCCCccccccchhcHHHHHHHH
Q psy6783 335 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRL 366 (1119)
Q Consensus 335 kV~VEfsSpNptkpLHVGHlRsaiiGDsLari 366 (1119)
+|+.=| .|+|||+||+||+|++++-..+|+-
T Consensus 29 ~v~tRF-aPsPtG~LHiG~ar~al~n~~~Ar~ 59 (554)
T PRK05347 29 RVHTRF-PPEPNGYLHIGHAKSICLNFGLAQD 59 (554)
T ss_pred ceEEEe-CCCCCCcccHHHHHHHHHHHHHHHH
Confidence 566666 7999999999999999999888875
No 132
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=95.12 E-value=0.056 Score=68.02 Aligned_cols=219 Identities=17% Similarity=0.166 Sum_probs=145.8
Q ss_pred ccchhhhhhhhhhHHHHHHHHH-HcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCcc
Q psy6783 556 GVHFRLLEESTIIGDTISRLLE-YLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDED 634 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~-~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d 634 (1119)
..|+||. |+.|..|.|.|+++ +.||+|.-+==+=|.|.
T Consensus 73 ~~HiGha-rt~v~~Dil~R~l~~~~Gy~V~~v~nitDidD---------------------------------------- 111 (651)
T PTZ00399 73 SSHLGHA-RTYVTFDIIRRILEDYFGYDVFYVMNITDIDD---------------------------------------- 111 (651)
T ss_pred Ccccccc-hHHHHHHHHHHHHHHhcCCceEEEeCCCCcch----------------------------------------
Confidence 5699996 99999999999999 99999865433333222
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccccc-c-cccchhhhhHHHHHHHHHhcCCeeeecCc
Q psy6783 635 EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT-E-RGESFYQKHMEQLVPYLEKKGNLSLTKKL 712 (1119)
Q Consensus 635 ~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd-~-~gES~y~~~~~~vi~~l~~~g~~~~~~~~ 712 (1119)
+++ .+|+ +.| +.+|..+++--.+.|.+-+++|||..+ + .-=|.|.+.|.+.++.|.++|.++..+|.
T Consensus 112 KIi-~~A~------~~g----~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gs 180 (651)
T PTZ00399 112 KII-KRAR------EEK----LSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGS 180 (651)
T ss_pred HHH-HHHH------HhC----CCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCe
Confidence 111 1111 112 133677788888899999999999886 3 33388999999999999999999987765
Q ss_pred eEEEEecCC-------c-------------------------c---hhh-------------------------HHHHHH
Q psy6783 713 GIVYVTDLG-------Q-------------------------G---VHF-------------------------RLLEEC 732 (1119)
Q Consensus 713 ~~v~v~d~~-------~-------------------------~---~h~-------------------------~~l~~~ 732 (1119)
+..++..-. . + ..| -.+-++
T Consensus 181 vyFd~~~f~~~~~~Yg~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam 260 (651)
T PTZ00399 181 VYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAM 260 (651)
T ss_pred EEEEchhcccchhhHHhhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHH
Confidence 433332110 0 0 000 000000
Q ss_pred HHH-cC---------CC-------------------CCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHHHHH
Q psy6783 733 AKK-AG---------IL-------------------NPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRS 783 (1119)
Q Consensus 733 ~~~-~g---------~~-------------------~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~~~~ 783 (1119)
+.. +| +. .++..-+.|.+| |. -+|.|||+|.|++|.+.++|++-
T Consensus 261 ~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~--L~-i~G~KMSKSLGNfItp~dlLeky---- 333 (651)
T PTZ00399 261 ASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGH--LH-IKGLKMSKSLKNFITIRQALSKY---- 333 (651)
T ss_pred HHHHcCCcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEE--EE-eccchhhhcCCCcccHHHHHHHc----
Confidence 000 00 00 011123455554 33 35679999999999999988631
Q ss_pred HHHHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhC
Q psy6783 784 LDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAG 859 (1119)
Q Consensus 784 ~~~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g 859 (1119)
+--+++|..|+.....++.|+++.+....+...+|.+| |.|+++++++..
T Consensus 334 -------------------------gaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l~n~-~~rl~s~l~~~~ 383 (651)
T PTZ00399 334 -------------------------TARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNF-FANVKIKLRESE 383 (651)
T ss_pred -------------------------ChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 11256666677778889999999998888888899998 999999988644
No 133
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=94.39 E-value=0.4 Score=54.70 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=81.3
Q ss_pred EEEEeec--CcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHH
Q psy6783 547 IVYVTDL--GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624 (1119)
Q Consensus 547 iIyVv~~--~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y 624 (1119)
-+||-|- =...|+||. |+-|.=|.|.|.|++.|++|.-+-=+=|..
T Consensus 10 ~~Y~CGPTVYd~~HiGha-R~~v~~D~l~R~L~~~g~~V~~V~NiTDiD------------------------------- 57 (300)
T PF01406_consen 10 RMYVCGPTVYDYAHIGHA-RTYVFFDVLRRYLEYLGYDVTYVMNITDID------------------------------- 57 (300)
T ss_dssp EEEEEEEBTTS--BHHHH-HHHHHHHHHHHHHHHTT-EEEEEEEEB-SS-------------------------------
T ss_pred EEEcCCCCCCCCCCCcce-eeeeeHHHHHHHHHHcCCeEEEEEeccccc-------------------------------
Confidence 4677663 235699996 999999999999999999987643333321
Q ss_pred HHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccc-cc-cccchhhhhHHHHHHHHHh
Q psy6783 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL-TE-RGESFYQKHMEQLVPYLEK 702 (1119)
Q Consensus 625 ~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~F-d~-~gES~y~~~~~~vi~~l~~ 702 (1119)
|.++. .+.|.|.. |..+.+.-.++|.+-.++|||.= +. -.-|.+.+.|.+.|+.|.+
T Consensus 58 ---------DKii~-------~A~~~g~~-----~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ii~~i~~Li~ 116 (300)
T PF01406_consen 58 ---------DKIIK-------RAREEGVS-----PQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPEIIELIEKLID 116 (300)
T ss_dssp ---------HHHHH-------HHHHTTS------HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHHHHHHHHHHHH
T ss_pred ---------hHHHH-------HHHhccCC-----HHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHHHHHHHHHHHH
Confidence 11111 11233333 77788888899999999999965 43 5777888999999999999
Q ss_pred cCCeeeecCceEEE
Q psy6783 703 KGNLSLTKKLGIVY 716 (1119)
Q Consensus 703 ~g~~~~~~~~~~v~ 716 (1119)
+|.++...+..|+|
T Consensus 117 ~G~AY~~~~g~VYF 130 (300)
T PF01406_consen 117 KGHAYESEDGSVYF 130 (300)
T ss_dssp TTSEEEETTSEEEE
T ss_pred CCCeEEcCCCcEEE
Confidence 99999998555554
No 134
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.22 E-value=0.16 Score=65.52 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=91.6
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhhh
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~ 1017 (1119)
++|..+-..++ .++.++.|-=+++...++.....|+.|+++- ++.. .=+|-||...+|=.-.......|
T Consensus 603 MSKSlGN~v~P---~~V~~~yGADiLRLwv~ssd~~~dl~~s~~i-l~~~-------~~~~r~irNt~rF~l~nl~~fdp 671 (933)
T COG0060 603 MSKSLGNVVDP---QDVIDKYGADILRLWVASSDYWEDLRFSDEI-LKQV-------REVYRKIRNTYRFLLGNLDDFDP 671 (933)
T ss_pred ccccCCCcCCH---HHHHHhhCchheeeeeeecCchhccccCHHH-HHHH-------HHHHHHHHHHHHHHHHhccCCCc
Confidence 34444444444 3445688888999999999999999999987 4321 11233333333322000000000
Q ss_pred hcc-CCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHH-HHHHhhhhc---ccccccCCccchhhhHhH
Q psy6783 1018 AAQ-STPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS-TAFSEFYDN---CYCIEKDAEGKIKTVHTG 1092 (1119)
Q Consensus 1018 ~~~-~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA-~~F~~FY~~---~~VL~~~~~~~~~~~~~a 1092 (1119)
... .....+... ++=++..|..+-..+.+|.+.+.-|.+++-+.+.+ ..+|+||=. .++..+..+ ...
T Consensus 672 ~~~~~~~~~~~~~-Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~------s~~ 744 (933)
T COG0060 672 KKDAVLPEELREL-DRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAAD------SPD 744 (933)
T ss_pred cccccchhhcchh-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCC------CHH
Confidence 000 000112222 33344556667777889999999999999999999 999999943 344443111 245
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q psy6783 1093 RLLLAEATAKVMKKCFDILN 1112 (1119)
Q Consensus 1093 RL~L~~at~~VL~~gL~LLG 1112 (1119)
|.+.-.+.-.||.....+|.
T Consensus 745 rraa~~~Ly~il~~l~~~lA 764 (933)
T COG0060 745 RRAAQTTLYHILKALVRLLA 764 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 66655555666666665553
No 135
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=93.97 E-value=0.089 Score=64.17 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCCCCCCccccccchhcHHHHHHHHH
Q psy6783 342 SPNIAKEMHVGHLRSTIIGDTISRLL 367 (1119)
Q Consensus 342 SpNptkpLHVGHlRsaiiGDsLaril 367 (1119)
.|+|||+|||||+|+|++-..+|+-.
T Consensus 6 aPsPtG~LHiG~ar~al~n~~~A~~~ 31 (522)
T TIGR00440 6 PPEPNGYLHIGHAKSICLNFGYAKYY 31 (522)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 69999999999999999988888743
No 136
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=93.85 E-value=0.24 Score=64.25 Aligned_cols=121 Identities=12% Similarity=0.091 Sum_probs=76.2
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhH-HHHHHHHHHHHHHHhCCCcchhh
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY-LLYAYTRIASIARTAGINSEDLR 1016 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~Y-lQYahARi~SIlrKa~~~~~~l~ 1016 (1119)
++|.++-.++.. ++.+..|.-+++|..|+....++++|+++.+.. +.-.. =.|+.+|....+. + . ...
T Consensus 534 MSKS~GN~i~p~---~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~---~~~~l~kl~N~~r~~~~~~--~-~-~~~- 602 (800)
T PRK13208 534 MSKSKGNVVTPE---ELLEKYGADAVRYWAASARLGSDTPFDEKQVKI---GRRLLTKLWNASRFVLHFS--A-D-PEP- 602 (800)
T ss_pred CCCCCCCCCCHH---HHHHHcCccHHHHHHhcCCCCCCceecHHHHHH---HHHHHHHHHHHHHHHHhcc--c-c-ccc-
Confidence 344444444443 444568888999999999999999999998642 21111 2233333221110 0 0 000
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHH-HHhhhhc
Q psy6783 1017 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTA-FSEFYDN 1074 (1119)
Q Consensus 1017 ~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~-F~~FY~~ 1074 (1119)
.....+ .+.++.++..|....+.+..+.+++.-+..+.-++++... |..+|-+
T Consensus 603 ----~~~~~~-~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie 656 (800)
T PRK13208 603 ----DKAEVL-EPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLE 656 (800)
T ss_pred ----CccccC-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHH
Confidence 000111 2445667788888999999999999999999999999864 7777743
No 137
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=93.82 E-value=0.11 Score=57.13 Aligned_cols=101 Identities=18% Similarity=0.015 Sum_probs=65.0
Q ss_pred HHHhhHHHHHHHHHHhcccccc--cccchhhhhHHHHHHHHHhcCCeeeecCceEEE--------EecCCcc-hhh-HHH
Q psy6783 662 ICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVY--------VTDLGQG-VHF-RLL 729 (1119)
Q Consensus 662 ~rd~Si~~~~~~Y~rL~V~Fd~--~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~v~--------v~d~~~~-~h~-~~l 729 (1119)
.+.-..+...+..++||+.+|. +.-|+..+...+.++.|.++|..-..+=+++|+ |+-..+. ... ++
T Consensus 48 ~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~y~~~~~~L~~~gg~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q- 126 (230)
T cd00418 48 SRPEYVESILEDLKWLGLDWDEGPYRQSDRFDLYRAYAEELIKKGGYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQ- 126 (230)
T ss_pred CChHHHHHHHHHHHHcCCCCCCCeeehhcCHHHHHHHHHHHHHcCCCccccccccccccccCCCEEEECHhhhhchHHH-
Confidence 3444566677888999999995 788888888899999999998443332222211 1111110 000 11
Q ss_pred HHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCC
Q psy6783 730 EECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGD 768 (1119)
Q Consensus 730 ~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~ 768 (1119)
..+.+.+|+..| .+-|+ +++++++|+|||+|+|.
T Consensus 127 ~~l~~~Lg~~~P---~~~H~--pll~~~~g~KLSKr~~~ 160 (230)
T cd00418 127 DWLYEALGWEPP---RFYHF--PRLLLEDGTKLSKRKLN 160 (230)
T ss_pred HHHHHHcCCCCC---eEEEe--eeeeCCCCCCccCcCCC
Confidence 123455687444 66775 58888999999999996
No 138
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=93.55 E-value=0.27 Score=64.00 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=72.5
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
++|+||+ |+.+++|.++|-.+..||+|.-.--.-+-|... ..
T Consensus 43 ~lHiGH~-~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpi---------------------e~---------------- 84 (842)
T TIGR00396 43 ALHMGHV-RNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPA---------------------EN---------------- 84 (842)
T ss_pred ccccchh-HHHHHHHHHHHHHHhcCCceeccCCcCCCChHH---------------------HH----------------
Confidence 5899998 999999999999999999996543222222211 00
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccccccc-----ccchhhhhHHHHHHHHHhcCCeeeec
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GESFYQKHMEQLVPYLEKKGNLSLTK 710 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~-----gES~y~~~~~~vi~~l~~~g~~~~~~ 710 (1119)
.| .+.|..- +.+.+-.++.+++.+++||+.||++ -.-.|......+...|-++|+++...
T Consensus 85 ----~a------~~~g~~p-----~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~ 149 (842)
T TIGR00396 85 ----AA------IKRGIHP-----AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKE 149 (842)
T ss_pred ----HH------HHcCCCH-----HHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeec
Confidence 00 1122211 2466777899999999999999852 33446778888889999999988654
Q ss_pred Cc
Q psy6783 711 KL 712 (1119)
Q Consensus 711 ~~ 712 (1119)
..
T Consensus 150 ~~ 151 (842)
T TIGR00396 150 AD 151 (842)
T ss_pred cc
Confidence 43
No 139
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=93.48 E-value=0.44 Score=60.20 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Q psy6783 991 AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070 (1119)
Q Consensus 991 ~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~ 1070 (1119)
.-=+.=+|-|+..|++|...... ...+...+.+++|.+|...+...-..+..+.....-.....+|..|....+.
T Consensus 568 ~~~l~~~~kRv~NIl~k~~~~~~-----~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~ 642 (682)
T PRK01233 568 FKALAAANKRVSNILKKAEGKVS-----GEVDPALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVDA 642 (682)
T ss_pred HHHHHHHHHHHHHHHhccccccC-----CccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHH
Confidence 34488899999999999753100 1245567889999999998888766666665555556677899999999999
Q ss_pred hhhcccccccCCccchhhhHhHHHHHHHHHHHHHHHH
Q psy6783 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107 (1119)
Q Consensus 1071 FY~~~~VL~~~~~~~~~~~~~aRL~L~~at~~VL~~g 1107 (1119)
|+++.-|..++ +.+++.||+|+..+...+...
T Consensus 643 FFD~VmVm~~d-----~~iR~NRL~LL~~i~~~f~~i 674 (682)
T PRK01233 643 FFDNVMVMAED-----EALRANRLALLASLRELFLRV 674 (682)
T ss_pred HhCCCeeeCCC-----HHHHHHHHHHHHHHHHHHHHh
Confidence 99998887654 358999999999998877654
No 140
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=93.30 E-value=0.41 Score=60.54 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Q psy6783 991 AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070 (1119)
Q Consensus 991 ~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~ 1070 (1119)
.-=+.=+|-|+..|++|+.... . ...+..++.+++|..|...+...-..+........=......|..|....+.
T Consensus 578 ~~~l~~a~kRv~NIl~k~~~~~-~----~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~ 652 (691)
T TIGR00211 578 AEALAAANKRVANILKKGNPVL-S----SEIQANLFKEPKEKALFEAVLAIKMNAQESFESGDYETALEALAELRAPVDE 652 (691)
T ss_pred HHHHHHHHHHHHHHHhcccccc-c----CccChhHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHH
Confidence 4447889999999999975210 0 1235567889999999988888755555444333445567889999999999
Q ss_pred hhhcccccccCCccchhhhHhHHHHHHHHHHHHHHHHh
Q psy6783 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108 (1119)
Q Consensus 1071 FY~~~~VL~~~~~~~~~~~~~aRL~L~~at~~VL~~gL 1108 (1119)
|+++.-|..++. .++..||+|+..++..+....
T Consensus 653 FFD~VmVm~~d~-----~iR~NRL~LL~~i~~lf~~ia 685 (691)
T TIGR00211 653 FFDSVMVMADDI-----ELRQNRLNFLWGLRQLFLEVA 685 (691)
T ss_pred HhCCCEeeCCCH-----HHHHHHHHHHHHHHHHHHHhc
Confidence 999988887553 589999999999998876543
No 141
>PLN02859 glutamine-tRNA ligase
Probab=93.27 E-value=0.075 Score=67.16 Aligned_cols=32 Identities=19% Similarity=0.435 Sum_probs=27.4
Q ss_pred EEEEEeeCCCCCCCccccccchhcHHHHHHHHH
Q psy6783 335 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLL 367 (1119)
Q Consensus 335 kV~VEfsSpNptkpLHVGHlRsaiiGDsLaril 367 (1119)
+|+.=| .|+|||+|||||+|++++---+|+-.
T Consensus 264 ~V~tRF-aPsPtG~LHiGharaallN~~~Ar~~ 295 (788)
T PLN02859 264 KVYTRF-PPEPNGYLHIGHAKAMFVDFGLAKER 295 (788)
T ss_pred ceEEEe-CCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 577776 79999999999999999988887754
No 142
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=92.69 E-value=0.49 Score=61.32 Aligned_cols=104 Identities=9% Similarity=0.002 Sum_probs=68.0
Q ss_pred HHHHHHhhhhhhhhhcc-cCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHH
Q psy6783 953 EAQQAVAYGCIKYADLS-HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKE 1031 (1119)
Q Consensus 953 ~~~~~v~~~ai~~~~L~-~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E 1031 (1119)
++.+.-|--|+++..|+ ....+++.|+.+.+... +=...|+.+.++..-.. . ...+. .+ .+.+
T Consensus 583 ~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~--------~~~l~kl~~~~~~~~~~---~---~~~~~-~~-~~~D 646 (805)
T PRK00390 583 DIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGA--------YRFLQRVWRLVVDAKGE---A---GALDV-AA-LSED 646 (805)
T ss_pred HHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHH--------HHHHHHHHHHHHHhhhc---c---cccCc-cc-Chhh
Confidence 34456777789999987 47778888887654421 11234444444431000 0 00111 11 2345
Q ss_pred HHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhh
Q psy6783 1032 FALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFY 1072 (1119)
Q Consensus 1032 ~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY 1072 (1119)
+.|+..|.+.-..+..+.++++-+.....++++...+++||
T Consensus 647 ~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~ 687 (805)
T PRK00390 647 KELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAE 687 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888899999999999999999999999998
No 143
>PLN02563 aminoacyl-tRNA ligase
Probab=92.54 E-value=0.47 Score=62.37 Aligned_cols=103 Identities=18% Similarity=0.130 Sum_probs=71.1
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
.+|+||+ |+.+|+|.++|..+-.||+|.-. .||+..|- |+. .+
T Consensus 125 ~lHiGH~-~~y~~~DviaRy~Rm~G~~Vl~~--------------~G~D~~Gl-------PiE----~~----------- 167 (963)
T PLN02563 125 GLHVGHP-EGYTATDILARYKRMQGYNVLHP--------------MGWDAFGL-------PAE----QY----------- 167 (963)
T ss_pred ccchhhH-HHHHHHHHHHHHHHhcCCeeccc--------------ccccccCc-------HHH----HH-----------
Confidence 5999998 99999999999999999998542 23322211 110 00
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccccccc-----ccchhhhhHHHHHHHHHhcCCeeeec
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GESFYQKHMEQLVPYLEKKGNLSLTK 710 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~-----gES~y~~~~~~vi~~l~~~g~~~~~~ 710 (1119)
+.+.|.. -.. +.+-.++.+++.+++||+.||++ -+..|......+...|-++|+++...
T Consensus 168 -----------a~~~g~~--p~~---~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~ 231 (963)
T PLN02563 168 -----------AIETGTH--PKI---TTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAE 231 (963)
T ss_pred -----------HHHcCCC--hHH---hHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeee
Confidence 1112211 112 23556788999999999999952 45557788888999999999988654
Q ss_pred C
Q psy6783 711 K 711 (1119)
Q Consensus 711 ~ 711 (1119)
.
T Consensus 232 ~ 232 (963)
T PLN02563 232 V 232 (963)
T ss_pred e
Confidence 3
No 144
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.44 E-value=0.15 Score=55.74 Aligned_cols=38 Identities=8% Similarity=0.187 Sum_probs=32.1
Q ss_pred eeCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCcc
Q psy6783 144 FSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSS 187 (1119)
Q Consensus 144 ~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~~ 187 (1119)
.+.+-| -||+ ||| |+|..|+.|+++|-+|..|++|.-.
T Consensus 25 ~~gpt~---y~~~--HiG-H~r~~v~~Dvl~R~lr~~G~~V~~~ 62 (213)
T cd00672 25 VCGPTV---YDYA--HIG-HARTYVVFDVLRRYLEDLGYKVRYV 62 (213)
T ss_pred EeCCcc---CCCc--ccc-cchhHHHHHHHHHHHHhcCCeeEEE
Confidence 355566 6667 999 9999999999999999999987643
No 145
>KOG0436|consensus
Probab=92.41 E-value=0.54 Score=55.01 Aligned_cols=111 Identities=19% Similarity=0.333 Sum_probs=78.1
Q ss_pred CCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHhcccCC
Q psy6783 344 NIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFD 423 (1119)
Q Consensus 344 NptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~y~~~~~~~~ 423 (1119)
.|+-+-|+||+-|+++-|+|||.-+..|-.|.-.--++..|..|...+++- +. .|.
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatn--------G~-~P~--------------- 104 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATN--------GR-NPP--------------- 104 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhc--------CC-ChH---------------
Confidence 566788999999999999999999999999999999999998887665431 00 111
Q ss_pred CcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec---cchhhhhHHHHHHHHHHHHCCCeEee
Q psy6783 424 EDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVPYLEKKGLLELD 500 (1119)
Q Consensus 424 ~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~---~geS~y~~~v~~vi~~L~~kG~~~e~ 500 (1119)
++|+..-+.|.+....+||.+.. .-+-.+...|++.-+.+.++|.+|..
T Consensus 105 ----------------------------e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g 156 (578)
T KOG0436|consen 105 ----------------------------ELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRG 156 (578)
T ss_pred ----------------------------HHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeee
Confidence 23444445566666666665431 22334445788888899999999875
Q ss_pred --CCCeEE
Q psy6783 501 --DGRKIM 506 (1119)
Q Consensus 501 --dGA~~~ 506 (1119)
+|=.|+
T Consensus 157 ~~eGwYcv 164 (578)
T KOG0436|consen 157 DYEGWYCV 164 (578)
T ss_pred cccceEec
Confidence 454443
No 146
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=91.92 E-value=3.4 Score=51.95 Aligned_cols=181 Identities=20% Similarity=0.192 Sum_probs=114.5
Q ss_pred CchhHHHHHHhhhccccccccccccCccchhhhhhcchhhhhhHHhhhcccCCCCChhhhHHHHHHHhhhhhhhhhcccC
Q psy6783 892 FTYTELIEQALKENGLCWVWRGVGRGQEEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 971 (1119)
Q Consensus 892 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~ 971 (1119)
+.+.+|++.+...-+-.+.| ..+.+.|.+-+..|....+++.. .+..-++ +.|..+
T Consensus 499 l~l~~ll~~~~~~~~~~~~~-------~~~~~~l~~F~~~Rl~~~l~d~g----~~~dii~-------------AVL~~~ 554 (691)
T COG0751 499 LDLEELLDKAVASFKSKLTN-------AKVLEELLDFFLGRLRTYLQDEG----YRKDIID-------------AVLALN 554 (691)
T ss_pred CCHHHHHHHHHHHhhhhccc-------cchHHHHHHHHHHHHHHHHHccC----CCHHHHH-------------HHHcCC
Confidence 34567777776444333333 33445566666666666555431 2211111 224444
Q ss_pred CCCCcccch-hhhc-ccc-CCchhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHH
Q psy6783 972 RNLDYVFSF-DKML-DDR-GNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048 (1119)
Q Consensus 972 r~~~~~Fd~-d~~l-~~~-gnt~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~A 1048 (1119)
....++|.- .+++ .+. ...+--+-=++-|+..|+.|.... ++ ...+..++.+++|..|...+..+..-+..+
T Consensus 555 ~~~l~~i~~r~~al~~f~~~~~~~~l~~a~kRv~nIl~k~~~~---~~--~~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a 629 (691)
T COG0751 555 PTDLLDIIARAEALQEFLDLPEAKALAAANKRVSNILAKAEKK---LS--GTVDPSLFEEDAEKALFEALQALKPKVAEA 629 (691)
T ss_pred CCCHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhcccc---cC--CccChHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 444444432 2222 222 233344558899999999998531 11 124566788999999999999888888887
Q ss_pred HHhcchHHHHHHHHHHHHHHHhhhhcccccccCCccchhhhHhHHHHHHHHHHHHHHH
Q psy6783 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKK 1106 (1119)
Q Consensus 1049 a~~l~P~~L~~YL~~LA~~F~~FY~~~~VL~~~~~~~~~~~~~aRL~L~~at~~VL~~ 1106 (1119)
...-.=...-..|..|..-...|++++-|..++ ..+++.||+|+...+..+..
T Consensus 630 ~a~~~y~~al~~L~~L~~pId~FFd~VmVm~eD-----~~iR~NRLalL~~l~~~f~~ 682 (691)
T COG0751 630 LAEKDYQDALAALAELRPPIDEFFDNVMVMAED-----EALRNNRLALLSKLRELFLK 682 (691)
T ss_pred HhhhhHHHHHHHHHHhhhhHHHHhcCceeeCCC-----HHHHHHHHHHHHHHHHHHHH
Confidence 766555556677888888899999998887654 36899999999888876654
No 147
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=91.65 E-value=2.6 Score=55.87 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHH-HHHHhhhhc
Q psy6783 1030 KEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS-TAFSEFYDN 1074 (1119)
Q Consensus 1030 ~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA-~~F~~FY~~ 1074 (1119)
..+-|+..|.++.+.+..+.++++.+...+-+++++ ..|++||=+
T Consensus 712 ~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle 757 (961)
T PRK13804 712 LERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFD 757 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999999999999999999999999 788888843
No 148
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=91.46 E-value=0.77 Score=61.21 Aligned_cols=126 Identities=9% Similarity=0.141 Sum_probs=75.6
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhccc-CCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhh
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSH-NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLR 1016 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~-~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~ 1016 (1119)
++|.++-.++..+ +.+..|.=+++|..++. ...+|+.|+++.+-.. +.-.--.++-+|..+...+ +.......
T Consensus 539 MSKSkGNvIdP~d---vIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~--~~f~nkl~N~~R~~~~~~~-~~~~~~~~ 612 (1052)
T PRK14900 539 MSKTKGNVIDPLV---ITEQYGADALRFTLAALTAQGRDIKLAKERIEGY--RAFANKLWNASRFALMNLS-GYQERGED 612 (1052)
T ss_pred ccCCCCCCCCHHH---HHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHH--HHHHHHHHHHHHHHHHhhh-ccCccccc
Confidence 4555555565544 44677888999999975 6788999999876321 1111122333343321111 00000000
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHH-HHHHhhhhc
Q psy6783 1017 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS-TAFSEFYDN 1074 (1119)
Q Consensus 1017 ~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA-~~F~~FY~~ 1074 (1119)
.....+ .+.+..++..|......+..+.++++.+..++.++++. ..|..+|-+
T Consensus 613 ----~~~~~~-~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie 666 (1052)
T PRK14900 613 ----PARLAR-TPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIE 666 (1052)
T ss_pred ----cccccc-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHH
Confidence 000112 23456677888888899999999999999999999997 466666633
No 149
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=91.32 E-value=1 Score=58.67 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Q psy6783 991 AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSE 1070 (1119)
Q Consensus 991 ~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~ 1070 (1119)
.--+.=+|.|+..|++|+... ..+..++.+++|.+|...+......+.....++ ......|..|....+.
T Consensus 893 ~~~l~~a~kRv~NIl~k~~~~--------~vd~~Lf~~~~E~~L~~a~~~~~~~~~~~~~dy--~~al~~La~L~~~Id~ 962 (1000)
T PRK14908 893 FAEIAAALNRLKRILASLSFS--------VTDASLLLEPAELNLKQALDAFREELTELPIDL--KDYVAAAAELPQAVNT 962 (1000)
T ss_pred HHHHHHHHHHHHHHHhhcCCC--------ccChhhcCCHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHhhhhHHHH
Confidence 444888999999999997521 134557889999999998888766665542333 3455788899999999
Q ss_pred hhhcccccccCCccchhhhHhHHHHHHHHHHHHHHHH
Q psy6783 1071 FYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKC 1107 (1119)
Q Consensus 1071 FY~~~~VL~~~~~~~~~~~~~aRL~L~~at~~VL~~g 1107 (1119)
|+++.-|..++ +.+++.||+|+..++..+...
T Consensus 963 FFD~VmVm~eD-----~~iR~NRLaLL~~i~~lf~~v 994 (1000)
T PRK14908 963 FFDEVLVMADD-----EAIRNARLGLLAAIRDLKFGV 994 (1000)
T ss_pred HhCCCEeeCCC-----HHHHHHHHHHHHHHHHHHHhh
Confidence 99998888655 368999999999998876544
No 150
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=90.34 E-value=0.93 Score=59.35 Aligned_cols=123 Identities=11% Similarity=0.129 Sum_probs=76.9
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCC-CCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhh
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR-NLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLR 1016 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r-~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~ 1016 (1119)
++|.++-.++..+ +.+..|.-|++|.+++... .+|+.|+++.+.+. ..-.--.++-+|.....-+. . ..++
T Consensus 526 MSKS~GN~i~p~~---~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~--~~~~nkl~N~~rf~~~~~~~-~--~~~~ 597 (861)
T TIGR00422 526 MSKSLGNVIDPLD---VIEKYGADALRFTLASLVTPGDDINFDWKRVESA--RNFLNKLWNASRFVLMNLSD-D--LELS 597 (861)
T ss_pred CCcCCCCCCCHHH---HHHHhChHHHHHHHHhCCCCCCCceecHHHHHHH--HHHHHHHHHHHHHHHhcccc-c--cccc
Confidence 4555555555443 4456888899999998776 89999999886531 11111233334433221110 0 0010
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHH-HHHHhhhh
Q psy6783 1017 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS-TAFSEFYD 1073 (1119)
Q Consensus 1017 ~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA-~~F~~FY~ 1073 (1119)
..... ..+.++-++..|....+-+..+.++++.+..++.++++. ..|..+|-
T Consensus 598 ----~~~~~-~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yi 650 (861)
T TIGR00422 598 ----GGEEK-LSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYI 650 (861)
T ss_pred ----ccccc-CCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 00011 134456677888888888999999999999999999996 67777773
No 151
>PLN02943 aminoacyl-tRNA ligase
Probab=90.17 E-value=1 Score=59.52 Aligned_cols=160 Identities=11% Similarity=0.159 Sum_probs=89.7
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhH-HHHHHHHHHHHHHHhCCC-cc--
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVY-LLYAYTRIASIARTAGIN-SE-- 1013 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~Y-lQYahARi~SIlrKa~~~-~~-- 1013 (1119)
++|..+-.++..+ +.+..|.-|++|..++....+|+.|+++.+.. +...+ =.++-+|-+ ++..... ..
T Consensus 584 MSKS~GN~i~p~~---~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~---~~~~~~kl~N~~rf~--~~~l~~~~~~~~ 655 (958)
T PLN02943 584 MSKTLGNVIDPLD---TIKEFGTDALRFTLALGTAGQDLNLSTERLTS---NKAFTNKLWNAGKFV--LQNLPSQSDTSA 655 (958)
T ss_pred ccCcCCCCCCHHH---HHHhcCChHHHHHHHhCCCCCCccccHHHHHH---HHHHHHHHHHHHHHH--Hhcccccccccc
Confidence 4555555555544 44568888999999988888999999987654 22222 233333332 1111000 00
Q ss_pred --hhh--hhccC-CCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHH-HHHHhhhhc-c-cccccCCccc
Q psy6783 1014 --DLR--VAAQS-TPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS-TAFSEFYDN-C-YCIEKDAEGK 1085 (1119)
Q Consensus 1014 --~l~--~~~~~-~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA-~~F~~FY~~-~-~VL~~~~~~~ 1085 (1119)
.+. ..+.. ....+ ...++-++..|....+.+..+.++++-+..++.++++. ..|..+|-+ + +.+-.+.+
T Consensus 656 ~~~~~~~~~~~~~~~~~l-~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~-- 732 (958)
T PLN02943 656 WEHILACKFDKEESLLSL-PLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGD-- 732 (958)
T ss_pred ccccccccCCcccccccc-CHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCc--
Confidence 000 00000 00012 23455577778888888899999999999999999996 677777744 2 22211111
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhhhcC
Q psy6783 1086 IKTVHTGRLLLAEATAKVMKKCFDILN 1112 (1119)
Q Consensus 1086 ~~~~~~aRL~L~~at~~VL~~gL~LLG 1112 (1119)
...|.........+|+..+.||-
T Consensus 733 ----~~~~~~a~~vL~~vl~~ll~LL~ 755 (958)
T PLN02943 733 ----NSALSRAQAVLLYVFENILKLLH 755 (958)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHh
Confidence 11233344444566666666664
No 152
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=89.89 E-value=1.1 Score=52.73 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCceEEEEeeCC-CccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCccc
Q psy6783 116 YAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSP-NIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSSS 188 (1119)
Q Consensus 116 ~~~~~~~~il~~g~~~g~~~~~~~v~vE~vSA-NP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~~~ 188 (1119)
|...+.+++++. .+ ++.+++| +|+ -| .|+. ||| |+|..+.+|+++|.+|..|++|.-.|
T Consensus 3 W~~~~A~~~~~~---~~---~~~~~~v--~tgi~p---sG~~--HIG-~~~e~i~~D~i~R~lr~~G~~v~~v~ 62 (353)
T cd00674 3 WADVIAEKIIEE---RK---GKEKYVV--ASGISP---SGHI--HIG-NFREVITADLVARALRDLGFEVRLIY 62 (353)
T ss_pred chHHHHHHHHHh---cc---CCCeEEE--ecCCCC---CCCc--ccC-ccHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 345566676653 11 1234664 444 35 8999 999 99999999999999999999876543
No 153
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.82 E-value=0.23 Score=63.52 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=33.7
Q ss_pred eEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCC
Q psy6783 139 RVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSS 185 (1119)
Q Consensus 139 ~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~ 185 (1119)
|..|=.-=+=| .|.| |+| |.|+-.+||++||-.|.+||+|-
T Consensus 35 Kfyvl~mfPYp---SG~L--HvG-H~r~Yti~Dv~aRykRm~GyNVL 75 (814)
T COG0495 35 KFYVLVMFPYP---SGAL--HVG-HVRNYTIGDVIARYKRMQGYNVL 75 (814)
T ss_pred ceEEEeCCCCC---CCCc--ccC-ccccccHHHHHHHHHHhcCCeec
Confidence 44443333567 8999 999 99999999999999999999874
No 154
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=88.55 E-value=1.6 Score=54.83 Aligned_cols=118 Identities=16% Similarity=0.127 Sum_probs=71.7
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
++|+||. ++.+|.|+++|..+-.|++|.-.-=.-.=|.. ++. ++.+.+...+
T Consensus 37 ~lH~GH~-~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glp---------------------ie~------~vek~l~~~~ 88 (601)
T PF00133_consen 37 DLHIGHA-LNKTIKDIIARYKRMQGYNVLFPPGWDCHGLP---------------------IEA------KVEKKLGIKE 88 (601)
T ss_dssp S-BHHHH-HHHHHHHHHHHHHHCTTSEEEEEEEEB--SHH---------------------HHH------HHHHHTTTTS
T ss_pred cccHHHH-HHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcc---------------------hhh------hHHHhhcccc
Confidence 5899996 99999999999999999999654322111221 111 0001100000
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccccccc-----ccchhhhhHHHHHHHHHhcCCeeee
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER-----GESFYQKHMEQLVPYLEKKGNLSLT 709 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~-----gES~y~~~~~~vi~~l~~~g~~~~~ 709 (1119)
. ....+-|.++.++.=+.+.+..++..++.+.|||+.+|+. -...|......+..+|-++|+++..
T Consensus 89 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~ 159 (601)
T PF00133_consen 89 K--------KDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRG 159 (601)
T ss_dssp H--------HHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred c--------ccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEee
Confidence 0 0001113334444445577778899999999999999852 3334677888888999999998764
No 155
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=87.89 E-value=2 Score=56.58 Aligned_cols=124 Identities=17% Similarity=0.140 Sum_probs=77.4
Q ss_pred hcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhhhh
Q psy6783 939 DKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVA 1018 (1119)
Q Consensus 939 ~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~~ 1018 (1119)
+|..+-.++.. ++.+.-|.=+++|..++....+|+.|+.+.+.+. .-.+-++...+|-.-.......+.
T Consensus 594 SKSlGNvIdP~---~ii~~yGaDalR~~ll~~~~~~D~~~s~~~l~~~--------~~~~~kl~N~~rf~~~nl~~~~~~ 662 (912)
T PRK05743 594 SKSLGNVIDPQ---DVIKKYGADILRLWVASTDYSGDVRISDEILKQV--------AEAYRRIRNTLRFLLGNLNDFDPA 662 (912)
T ss_pred CCCCCCcCCHH---HHHHhcChHHHHHHHHhcCCCCCeeecHHHHHHH--------HHHHHHHHHHHHHHHhCccCCCcc
Confidence 33333344443 4456788889999999999999999997765431 111223444433221000000000
Q ss_pred cc-CCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHH-HHHHhhhhc
Q psy6783 1019 AQ-STPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS-TAFSEFYDN 1074 (1119)
Q Consensus 1019 ~~-~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA-~~F~~FY~~ 1074 (1119)
.. .....+ .+.++.++..|....+.+..+.++++.+..++.+++++ ..+++||-+
T Consensus 663 ~~~~~~~~l-~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie 719 (912)
T PRK05743 663 KDAVPYEEL-LELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLD 719 (912)
T ss_pred cccCCchhC-CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeehe
Confidence 00 000111 34567788888999999999999999999999999999 588888843
No 156
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.80 E-value=13 Score=48.25 Aligned_cols=77 Identities=9% Similarity=0.092 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHH-HHHHhhhhcc-c-ccccCCccchhhhHhHHHHHHHHHHHHH
Q psy6783 1028 HEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS-TAFSEFYDNC-Y-CIEKDAEGKIKTVHTGRLLLAEATAKVM 1104 (1119)
Q Consensus 1028 ~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA-~~F~~FY~~~-~-VL~~~~~~~~~~~~~aRL~L~~at~~VL 1104 (1119)
++..+-++..|.+.-+.+..+.++++=...++.||+.. +.|-.+|=+. + .+-.+ ..++.........||
T Consensus 604 ~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~--------~~~~~~a~~tL~~vl 675 (877)
T COG0525 604 SLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG--------EEEKRAARATLYYVL 675 (877)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc--------HHHHHHHHHHHHHHH
Confidence 45566666677777777778888888888888888887 7777777432 2 22111 134446666667889
Q ss_pred HHHhhhcC
Q psy6783 1105 KKCFDILN 1112 (1119)
Q Consensus 1105 ~~gL~LLG 1112 (1119)
.+.|.||-
T Consensus 676 ~~~lrLLh 683 (877)
T COG0525 676 DTLLRLLH 683 (877)
T ss_pred HHHHHHhC
Confidence 99999885
No 157
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=86.20 E-value=0.49 Score=56.99 Aligned_cols=48 Identities=10% Similarity=-0.012 Sum_probs=42.1
Q ss_pred HHHHhhHHHHHHHHHHhcccccc-cccchhhhhHHHHHHHHHhcCCeee
Q psy6783 661 MICDVSRRDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGNLSL 708 (1119)
Q Consensus 661 ~~rd~Si~~~~~~Y~rL~V~Fd~-~gES~y~~~~~~vi~~l~~~g~~~~ 708 (1119)
+.++.+++.+.+++++|||.||+ +.||+..+...++++.|.++|.++.
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHHCCCEEE
Confidence 45578899999999999999995 8899877788999999999999764
No 158
>PLN02381 valyl-tRNA synthetase
Probab=85.87 E-value=0.77 Score=61.23 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=39.2
Q ss_pred CceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCcc
Q psy6783 137 KLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSS 187 (1119)
Q Consensus 137 ~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~~ 187 (1119)
+.+..|-.--+|+ ||+| |+| |+++-++.|+++|-.+-.||+|--.
T Consensus 127 ~~~f~i~~ppPy~---nG~l--HiG-Ha~~~ti~Dii~Ry~rm~G~~vl~~ 171 (1066)
T PLN02381 127 KPPFVIVLPPPNV---TGAL--HIG-HALTAAIEDTIIRWKRMSGYNALWV 171 (1066)
T ss_pred CCcEEEEeCCCCC---CCCc--cHH-HHHHHHHHHHHHHHHHhCCCccccc
Confidence 3457777777899 9999 999 9999999999999999999987554
No 159
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=85.63 E-value=0.83 Score=60.68 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=38.9
Q ss_pred CceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCc
Q psy6783 137 KLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSS 186 (1119)
Q Consensus 137 ~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~ 186 (1119)
+.+..|-.-=+|| ||+| |+| |+++.++.|+++|-.|-+|++|--
T Consensus 59 ~~~f~i~~ppP~~---~G~l--HiG-Ha~~~~~~D~~~Ry~rm~G~~v~~ 102 (995)
T PTZ00419 59 GKKFVIVLPPPNV---TGYL--HIG-HALTGAIQDSLIRYHRMKGDETLW 102 (995)
T ss_pred CCeEEEEeCCCCC---CCCC--cHH-HHHHHHHHHHHHHHHHhcCCcccC
Confidence 4457776777788 9999 999 999999999999999999999865
No 160
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=85.43 E-value=0.92 Score=53.05 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=38.0
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCch
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G 384 (1119)
...++++ ++--|.|+.|||++|-.+.++.++|.|+..|++|.-++...|.=
T Consensus 22 ~~~~v~~-sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D 72 (360)
T PF01921_consen 22 KEPYVFA-SGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMD 72 (360)
T ss_dssp -SEEEEE-EEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTS
T ss_pred CccEEEe-cCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 3456665 67889999999999999999999999999999999999999953
No 161
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=84.90 E-value=12 Score=35.23 Aligned_cols=76 Identities=16% Similarity=0.081 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhh
Q psy6783 994 LLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYD 1073 (1119)
Q Consensus 994 lQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~ 1073 (1119)
.++-+.|+++.+.+..... .++ .+. ....+.+..|+..+.++.+.+.++.++++++..+..+++++...+.|.+
T Consensus 10 ~~n~~~r~~~~~~~~~~~~--~~~---~~~-~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~ 83 (117)
T cd07375 10 FLNRLYRLLSFFRKALGGT--QPK---WDN-ELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLD 83 (117)
T ss_pred HHHHHHHHHHHHHHhcCCC--CCC---cCh-hhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHH
Confidence 6777888888876652211 000 000 0124557889999999999999999999999999999999999988876
Q ss_pred cc
Q psy6783 1074 NC 1075 (1119)
Q Consensus 1074 ~~ 1075 (1119)
..
T Consensus 84 ~~ 85 (117)
T cd07375 84 EL 85 (117)
T ss_pred Hh
Confidence 44
No 162
>KOG0434|consensus
Probab=84.29 E-value=3.2 Score=51.44 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=76.4
Q ss_pred CCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHhccc
Q psy6783 342 SPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKR 421 (1119)
Q Consensus 342 SpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~y~~~~~~ 421 (1119)
-|=.||--|-||+-...|-|++-|..--.||.|.|.+-.+=.|..+---+. ++--|..=.++.+..-.
T Consensus 46 PPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eID-----------KkLgI~g~~dV~kmGI~- 113 (1070)
T KOG0434|consen 46 PPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEID-----------KKLGITGRDDVMKMGID- 113 (1070)
T ss_pred CccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeec-----------hhcCCCCHHHHHHHhHH-
Confidence 467899999999999999999999999999999999988888876632110 00001000111111000
Q ss_pred CCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEe--ccchhhhhHH---HHHHHHHHHHCCC
Q psy6783 422 FDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLT--ERGESFYQKH---MEQLVPYLEKKGL 496 (1119)
Q Consensus 422 ~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~--~~geS~y~~~---v~~vi~~L~~kG~ 496 (1119)
....+++. ++-..-.+-+.+..|||.|.| ....++|-.. +==++++|-+||+
T Consensus 114 -----kYN~ECR~------------------IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kgl 170 (1070)
T KOG0434|consen 114 -----KYNNECRK------------------IVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGL 170 (1070)
T ss_pred -----hHhHHHHH------------------HHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCc
Confidence 11223333 333334455667788887744 3234555433 3356899999999
Q ss_pred eEe
Q psy6783 497 LEL 499 (1119)
Q Consensus 497 ~~e 499 (1119)
+|.
T Consensus 171 VYR 173 (1070)
T KOG0434|consen 171 VYR 173 (1070)
T ss_pred eec
Confidence 985
No 163
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=84.05 E-value=4.2 Score=53.58 Aligned_cols=115 Identities=9% Similarity=-0.011 Sum_probs=73.3
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhcc-cCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhh
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLS-HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLR 1016 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~-~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~ 1016 (1119)
++|.++-.++.. ++.+.-|.=|++|..++ .....|.+|+++.+.+. +| -..|+.++.++.-...
T Consensus 578 MSKS~GNvVdp~---eii~~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~-~~-------~l~r~~~~~~~~~~~~---- 642 (897)
T PRK12300 578 MSKSKGNVIPLR---KAIEEYGADVVRLYLTSSAELLQDADWREKEVESV-RR-------QLERFYELAKELIEIG---- 642 (897)
T ss_pred ccCcCCCCCCHH---HHHHHcChHHHHHHHHhCCCCCCCCccCHHHHHHH-HH-------HHHHHHHHHHHHhcCC----
Confidence 445444455543 44567888899999997 57889999998875432 11 1236666666542110
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHH-HHHHHHHhhhh
Q psy6783 1017 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLY-DISTAFSEFYD 1073 (1119)
Q Consensus 1017 ~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~-~LA~~F~~FY~ 1073 (1119)
....+ .+.++.++..|...-+.+..+.++++.+..++.++ .+...++.|.+
T Consensus 643 -----~~~~~-~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~ 694 (897)
T PRK12300 643 -----GEEEL-RFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLR 694 (897)
T ss_pred -----Ccccc-CHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 00111 23445577778888888888999999988887664 67777764443
No 164
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=82.58 E-value=0.9 Score=59.94 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=36.7
Q ss_pred ceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCc
Q psy6783 138 LRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSS 186 (1119)
Q Consensus 138 ~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~ 186 (1119)
.+..|=+-=+|| ||+| |+| |+|+-++.|++||-.|-.|++|--
T Consensus 25 ~kf~i~~ppPy~---nG~l--H~G-H~~~~~~~D~~aRy~Rm~G~~vl~ 67 (938)
T TIGR00395 25 EKFFLTMAYPYL---NGVM--HAG-HCRTFTIPEVSARFERMKGKNVLF 67 (938)
T ss_pred CceEEecCCCCC---CCCc--ccc-hhhhhhHHHHHHHHHHhcCCccCC
Confidence 456665555678 9999 999 999999999999999999999843
No 165
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=82.08 E-value=1.6 Score=53.82 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCccc
Q psy6783 115 VYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSSS 188 (1119)
Q Consensus 115 ~~~~~~~~~il~~g~~~g~~~~~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~~~ 188 (1119)
.|...+.+++++. .+ ++..++|+--- -| +|+. ||| |.|..+.+|+++|.++..|++|...|
T Consensus 6 ~W~~~~A~~~~~r---~~---~~~~~~~~~g~-~p---sG~~--HiG-~~~e~~~~d~v~r~lr~~G~~v~~i~ 66 (510)
T PRK00750 6 HWADEEAEKIIKR---LG---KKPPVVVETGI-GP---SGLP--HIG-NFREVARTDMVRRALRDLGIKTRLIF 66 (510)
T ss_pred cChHHHHHHHHHh---cC---CCCcEEEEeCC-CC---CCCc--ccc-cccchhhHHHHHHHHHHcCCcEEEEE
Confidence 4556677777762 22 11236665322 47 9999 999 99999999999999999999987654
No 166
>PLN02843 isoleucyl-tRNA synthetase
Probab=81.98 E-value=5.9 Score=52.71 Aligned_cols=108 Identities=12% Similarity=0.025 Sum_probs=66.7
Q ss_pred HHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHH
Q psy6783 957 AVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAK 1036 (1119)
Q Consensus 957 ~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~ 1036 (1119)
..|.=+++|..++....+++.|+.+.+.+. .=.+-|+.+.+|-.-.......+........+ .+.++-++.
T Consensus 637 ~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~--------~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~-~~~D~wiLs 707 (974)
T PLN02843 637 AYGADVLRLWVASVDYTGDVLIGPQILKQM--------SDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDL-PSIDKYALF 707 (974)
T ss_pred ccChHHHHHHHHhcccCCCceeCHHHHHHH--------HHHHHHHHHHHHHHHhCccCCCcccccCcccc-CHHHHHHHH
Confidence 456668999999988889999997665421 12233444554432100000000000001112 234566788
Q ss_pred HHHhhHHHHHHHHHhcchHHHHHHHHHHH-HHHHhhhh
Q psy6783 1037 TLLRMNDVLMLVTRDLCLHHLCEYLYDIS-TAFSEFYD 1073 (1119)
Q Consensus 1037 ~L~~fpevl~~Aa~~l~P~~L~~YL~~LA-~~F~~FY~ 1073 (1119)
.|.+..+.+.++.++++.+...+.+++.+ ..++.+|=
T Consensus 708 kL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yi 745 (974)
T PLN02843 708 QLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYL 745 (974)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHH
Confidence 89999999999999999999999998775 45666663
No 167
>KOG0433|consensus
Probab=80.69 E-value=9.9 Score=47.88 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHH--HHHHHHhhcCCCCCCCCChHHHHHHHHHhcccC
Q psy6783 345 IAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM--LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRF 422 (1119)
Q Consensus 345 ptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~--L~~~~~~r~~e~~~~~~~i~~l~~~y~~~~~~~ 422 (1119)
-+|.+|+||++|-|+=|.+-|+.=+.|..|.-.--..=.|..+.- +..++- +. . +..
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~----~~---~--------------~~~ 124 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLT----ES---E--------------GSR 124 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhh----hc---c--------------ccC
Confidence 669999999999999999999999999987665555555555542 111110 00 0 000
Q ss_pred CCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHHHHHHHHCCCe
Q psy6783 423 DEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQLVPYLEKKGLL 497 (1119)
Q Consensus 423 ~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~vi~~L~~kG~~ 497 (1119)
..-++++.| +.|.+..++...+.|.|+||.=|+.. .-.|.-.--+++..|-++|++
T Consensus 125 -s~leiR~~A------------------r~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLv 185 (937)
T KOG0433|consen 125 -TPLEIRAKA------------------RIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLV 185 (937)
T ss_pred -CcHHHHHHH------------------HHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccce
Confidence 001222222 34445566677788999998655420 112222334778889999999
Q ss_pred Eee
Q psy6783 498 ELD 500 (1119)
Q Consensus 498 ~e~ 500 (1119)
|.+
T Consensus 186 yR~ 188 (937)
T KOG0433|consen 186 YRS 188 (937)
T ss_pred ecc
Confidence 974
No 168
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=75.64 E-value=3.6 Score=50.78 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCCceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCcc
Q psy6783 117 AGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSS 187 (1119)
Q Consensus 117 ~~~~~~~il~~g~~~g~~~~~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~~ 187 (1119)
..++.+++++. .+ + .+++|+=-= -| +|+. ||| |.|..+.+|.++|.++..|++|...
T Consensus 4 ~~~~A~~l~~r---~~---~-~~~~~~tg~-~p---sG~~--HiG-~~~e~~~~d~v~r~~r~~g~~~~~i 60 (515)
T TIGR00467 4 ADVIAEKLKKE---KP---K-NLYTVASGI-TP---SGHI--HIG-NFREVITADAIARALRDSGSEARFI 60 (515)
T ss_pred cHHHHHHHHhh---cc---C-CeEEEecCC-CC---CCCc--ccc-chhhhhHHHHHHHHHHHcCCCEEEE
Confidence 34556666653 11 1 246665322 37 9999 999 9999999999999999999887553
No 169
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=75.14 E-value=1.8 Score=48.11 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=17.4
Q ss_pred CCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 147 PNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 147 ANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
+.| ||++ |+| |+|+|++.+.+||
T Consensus 8 PsP---tG~l--HiG-~~rtal~~~l~Ar 30 (240)
T cd09287 8 PNP---NGPL--HLG-HARAAILNGEYAK 30 (240)
T ss_pred CCC---CCCc--cHH-HHHHHHHHHHHHH
Confidence 467 7777 777 7777777777777
No 170
>KOG1147|consensus
Probab=74.91 E-value=2.5 Score=51.15 Aligned_cols=29 Identities=21% Similarity=0.610 Sum_probs=23.5
Q ss_pred EEEEEeeCCCCCCCccccccchhcHHHHHH
Q psy6783 335 RVLVDFSSPNIAKEMHVGHLRSTIIGDTIS 364 (1119)
Q Consensus 335 kV~VEfsSpNptkpLHVGHlRsaiiGDsLa 364 (1119)
+|++-| -|-|.|-|||||++.|.+-.-.|
T Consensus 200 kVv~RF-PPEpSGyLHIGHAKAALLNqYfa 228 (712)
T KOG1147|consen 200 KVVTRF-PPEPSGYLHIGHAKAALLNQYFA 228 (712)
T ss_pred ceEEec-CCCCCceeehhhHHHHHHHHHHH
Confidence 688888 69999999999999887654443
No 171
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=74.84 E-value=16 Score=47.88 Aligned_cols=36 Identities=28% Similarity=0.527 Sum_probs=29.1
Q ss_pred CCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHH
Q psy6783 740 NPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDE 778 (1119)
Q Consensus 740 ~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~ 778 (1119)
.|.+.-+.| |+|+.++|.|||.|.|++|.-.+++++
T Consensus 584 aPYk~vltH---GfvlDe~GrKMSKSlGN~v~P~~V~~~ 619 (933)
T COG0060 584 APYKNVLTH---GFVLDEKGRKMSKSLGNVVDPQDVIDK 619 (933)
T ss_pred chHHHHhhc---ccEECCCCCCccccCCCcCCHHHHHHh
Confidence 344445566 889999999999999999999888763
No 172
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=74.72 E-value=1.9 Score=53.53 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=28.1
Q ss_pred CceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 137 KLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 137 ~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
+.+|..=| -+|| |||| ||| |+|+|++.+.+||
T Consensus 99 ~g~V~tRF-aPsP---tG~L--HIG-haraalln~~~Ar 130 (567)
T PRK04156 99 KGKVVMRF-APNP---SGPL--HLG-HARAAILNDEYAK 130 (567)
T ss_pred CCeEEEEe-CCCC---CCCc--cHH-HHHHHHHHHHHHH
Confidence 44577765 7899 9999 999 9999999999998
No 173
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=74.66 E-value=2.8 Score=40.77 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHhhCCCCC
Q psy6783 844 LLYAYTRIASIARTAGINSE 863 (1119)
Q Consensus 844 l~y~~~rl~si~rk~g~~~~ 863 (1119)
+||+|+|++||+||++....
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~ 20 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGI 20 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTC
T ss_pred ChHHHHHHHHHHHcCCCcCC
Confidence 69999999999999986543
No 174
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=74.63 E-value=2.1 Score=56.78 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=31.7
Q ss_pred CCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCcc
Q psy6783 147 PNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSS 187 (1119)
Q Consensus 147 ANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~~ 187 (1119)
+|| ||.| |+| |+++-++.|+++|--+-+||+|--.
T Consensus 50 Py~---nG~l--H~G-H~l~~t~kD~i~Ry~rm~G~~v~~~ 84 (975)
T PRK06039 50 PTA---NGLP--HYG-HLLTRTIKDVVPRYKTMKGYKVERR 84 (975)
T ss_pred CCC---CCCc--cHh-hhHhhHHHHHHHHHHHhCCCcccCc
Confidence 577 9999 999 9999999999999999999987543
No 175
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=72.60 E-value=5 Score=49.63 Aligned_cols=47 Identities=21% Similarity=0.483 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 115 VYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 115 ~~~~~~~~~il~~g~~~g~~~~~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
.|..+++.+-+.+| .|| +|..=| .++| ||+| ||| |+|+|++...+||
T Consensus 12 ~f~~~~~~~dl~~~-~~~------~v~tRF-aPsP---tG~L--HiG-~ar~al~n~~~Ar 58 (554)
T PRK05347 12 NFIRQIIDEDLASG-KHT------RVHTRF-PPEP---NGYL--HIG-HAKSICLNFGLAQ 58 (554)
T ss_pred cHHHHHHHhHHhcC-CcC------ceEEEe-CCCC---CCcc--cHH-HHHHHHHHHHHHH
Confidence 45666666666655 233 366666 5799 9999 999 9999999999997
No 176
>PLN02882 aminoacyl-tRNA ligase
Probab=72.53 E-value=2.5 Score=57.03 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=32.2
Q ss_pred CCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCccc
Q psy6783 147 PNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSSS 188 (1119)
Q Consensus 147 ANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~~~ 188 (1119)
+|+ ||++ |+| |+++-++.|+++|--+-.||+|.-.+
T Consensus 47 Pya---nG~~--HiG-H~~~~~ikDii~Ry~rm~G~~V~~~~ 82 (1159)
T PLN02882 47 PFA---TGLP--HYG-HILAGTIKDIVTRYQSMTGHHVTRRF 82 (1159)
T ss_pred CCC---CCcc--hhh-HHHHHHHHHHHHHHHHcCCCcccccC
Confidence 466 9999 999 99999999999999999999986543
No 177
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=71.20 E-value=2.7 Score=56.64 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=32.3
Q ss_pred CCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCccc
Q psy6783 147 PNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSSS 188 (1119)
Q Consensus 147 ANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~~~ 188 (1119)
+|+ ||++ |+| |+++-++.|+++|--+-+||+|.-.+
T Consensus 111 Pya---nG~l--HiG-Hal~~tikDii~Ry~rm~G~~V~~~~ 146 (1205)
T PTZ00427 111 PFA---TGLP--HYG-HLLAGIIKDCVTRYFYQCGFSVERKF 146 (1205)
T ss_pred CCC---CCCc--chh-HHHHHHHHHHHHHHHHcCCCeeccCC
Confidence 466 9999 999 99999999999999999999886543
No 178
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=69.94 E-value=4.4 Score=47.55 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcC-CCCCCCCCCceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCc
Q psy6783 115 VYAGEQMKDIIVNG-VQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSS 186 (1119)
Q Consensus 115 ~~~~~~~~~il~~g-~~~g~~~~~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~ 186 (1119)
.|...+..+|++.. ..-+ .+..++++ +.--| .|+. ||| +.|-++.++.++|.|+..|.++..
T Consensus 2 ~W~d~~A~~i~~~r~~~~~---~~~~~v~~-sG~sP---SG~~--HIG-n~rEv~~~~~V~~al~~~g~~~r~ 64 (360)
T PF01921_consen 2 HWADEIADEIIKERGKRKG---GKEPYVFA-SGISP---SGLP--HIG-NFREVLRADMVARALRDRGKDVRL 64 (360)
T ss_dssp -HHHHHHHHHHHHC----------SEEEEE-EEE-----SS-----HH-HHHHHHHHHHHHHHHHTTT-EEEE
T ss_pred CchHHHHHHHHHHhhcccc---CCccEEEe-cCCCC---CCCc--ccc-cccchhhHHHHHHHHHHcCCCEEE
Confidence 35667778888432 2222 23446654 55678 9999 999 999999999999999999998544
No 179
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=68.51 E-value=7.6 Score=50.04 Aligned_cols=49 Identities=31% Similarity=0.567 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCCceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 113 SRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 113 ~~~~~~~~~~~il~~g~~~g~~~~~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
+..|+.+++.+=+..| .+| +|..=| -++| ||+| ||| |+|+|++...+||
T Consensus 12 ~~~f~~~~~~~~l~~g-~~~------~v~tRF-aPsP---tG~l--HiG-har~alln~~~A~ 60 (771)
T PRK14703 12 SPNFITEIIEEDLEAG-RYP------RVVTRF-PPEP---NGYL--HIG-HAKSILLNFGIAR 60 (771)
T ss_pred chhHHHHHHHHHHhcC-CCC------ceEEEe-CcCC---CCcc--cHH-HHHHHHHHHHHHH
Confidence 4567777777776654 222 366655 5799 9999 999 9999999999996
No 180
>PLN02959 aminoacyl-tRNA ligase
Probab=68.37 E-value=5 Score=53.87 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=37.3
Q ss_pred ceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCc
Q psy6783 138 LRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSS 186 (1119)
Q Consensus 138 ~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~ 186 (1119)
.+..+.+-=+++ ||+| |+| |+++-++.|.++|--|-+|++|--
T Consensus 45 ~kf~i~~ppPY~---NG~l--HiG-Ha~t~t~~D~i~Rykrm~G~~vlf 87 (1084)
T PLN02959 45 EKFFGNFPYPYM---NGLL--HLG-HAFSLSKLEFAAAYHRLRGANVLL 87 (1084)
T ss_pred CcEEEeCCCCCC---CCCc--chh-hHHHHHHHHHHHHHHHcCCCccCC
Confidence 456676666788 9999 999 999999999999999999998754
No 181
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=67.95 E-value=3.2 Score=46.13 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=19.5
Q ss_pred CCCccccCCcccCCCCchhhHHHHHHHHHHH
Q psy6783 146 SPNIARKGGFLYPHLPSQIHDILISKAIAEE 176 (1119)
Q Consensus 146 SANP~~~tg~l~~hig~~~r~~~~gd~lar~ 176 (1119)
.++| |||| |+| |+|+|++.-..||-
T Consensus 7 APsP---tG~l--HlG-~~~~al~~~l~Ar~ 31 (238)
T cd00807 7 PPEP---NGYL--HIG-HAKAILLNFGYAKK 31 (238)
T ss_pred CCCC---CCcc--cHH-HHHHHHHHHHHHHH
Confidence 3578 8888 888 88888888888753
No 182
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=65.27 E-value=3.4 Score=47.84 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=19.1
Q ss_pred CCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 146 SPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 146 SANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
.++| |||| |+| |+|+|++.-..||
T Consensus 7 APsP---tG~l--HiG-~~r~al~n~~~Ar 30 (314)
T PF00749_consen 7 APSP---TGYL--HIG-HARTALLNYLFAR 30 (314)
T ss_dssp ---S---SSS---BHH-HHHHHHHHHHHHH
T ss_pred CCCC---CCCc--ccc-hhHHHHHHHHHHh
Confidence 5799 9999 999 9999999999986
No 183
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=65.25 E-value=3.8 Score=50.92 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=27.1
Q ss_pred ceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 138 LRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 138 ~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
.+|..=| -++| |||| ||| |+|+|++-..+||
T Consensus 92 ~~vvtRF-aPsP---tG~L--HiG-haraalln~~~Ar 122 (560)
T TIGR00463 92 GEVVMRF-APNP---SGPL--HIG-HARAAILNQYFAK 122 (560)
T ss_pred CeeEEEe-CCCC---CCCc--cHH-HHHHHHHHHHHHH
Confidence 3577777 5799 9999 999 9999999999996
No 184
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=65.15 E-value=4 Score=46.37 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=22.3
Q ss_pred CCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 146 SPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 146 SANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
-++| ||+| ||| |+|.|++.-..||
T Consensus 6 APSP---tG~l--HiG-~~rtAL~n~l~Ar 29 (272)
T TIGR03838 6 APSP---SGPL--HFG-SLVAALGSYLDAR 29 (272)
T ss_pred CCCC---CCcc--cHH-HHHHHHHHHHHHH
Confidence 3689 9999 999 9999999999997
No 185
>KOG0435|consensus
Probab=64.45 E-value=2.3 Score=52.71 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=35.4
Q ss_pred CCceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCC
Q psy6783 136 KKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSS 185 (1119)
Q Consensus 136 ~~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~ 185 (1119)
.+.|+++-. =+=| .|-| ||| |.|.-.|.|+|||.-|-+||.|-
T Consensus 56 sk~KYiLsM-FPYP---SG~L--HiG-HvRVYTIsD~laRf~rm~GynVi 98 (876)
T KOG0435|consen 56 SKKKYILSM-FPYP---SGAL--HIG-HVRVYTISDILARFYRMKGYNVI 98 (876)
T ss_pred CCCceEEEe-cCCC---CCcc--ccc-ceEEEEehHHHHHHHHhcCceee
Confidence 355666532 2567 8889 999 99999999999999999999874
No 186
>KOG1148|consensus
Probab=63.94 E-value=9.9 Score=46.73 Aligned_cols=61 Identities=21% Similarity=0.399 Sum_probs=48.4
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcH----------------------------HHHHHHHHHHcCCcEEEecccCCch
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTII----------------------------GDTISRLLEYLGHDVVRLNHVGDWG 384 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaii----------------------------GDsLaril~~~Gy~V~renyInD~G 384 (1119)
|.+|+--| -|-|+|-|||||+...-+ =++|..+-+++||+-.++-|.-|.=
T Consensus 246 GGkV~TRF-PPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDyF 324 (764)
T KOG1148|consen 246 GGKVVTRF-PPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDYF 324 (764)
T ss_pred CCeeEEeC-CCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceeeecchhHH
Confidence 44565555 799999999999876543 3789999999999999999999987
Q ss_pred hHHHHHHHHH
Q psy6783 385 TQFGMLIAHL 394 (1119)
Q Consensus 385 ~Qi~~L~~~~ 394 (1119)
-|+-.++.-+
T Consensus 325 dqLy~~av~L 334 (764)
T KOG1148|consen 325 DQLYELAVEL 334 (764)
T ss_pred HHHHHHHHHH
Confidence 7776666544
No 187
>KOG1247|consensus
Probab=62.69 E-value=14 Score=43.84 Aligned_cols=116 Identities=18% Similarity=0.352 Sum_probs=87.2
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcH-HHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTII-GDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 410 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaii-GDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~ 410 (1119)
+...|+|--.-|-.+---|+|++=+.++ +|+.||..++-|+.-.++.-++.+|+-.-+=+ +
T Consensus 12 n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetka--l---------------- 73 (567)
T KOG1247|consen 12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKA--L---------------- 73 (567)
T ss_pred CccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHH--H----------------
Confidence 3456788777788888889999888877 99999999999999999988888888553321 1
Q ss_pred HHHHHHHhcccCCCcHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccchhhh--h-HHHHH
Q psy6783 411 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRF-DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFY--Q-KHMEQ 486 (1119)
Q Consensus 411 l~~~y~~~~~~~~~de~~~~~a~~~~~~le~g-d~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~geS~y--~-~~v~~ 486 (1119)
|+| .| +.+|+....-++.+|+.++|.||+.|..-. + +..+.
T Consensus 74 -----------------------------eeg~tP------~elcdKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~ 118 (567)
T KOG1247|consen 74 -----------------------------EEGLTP------QELCDKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQD 118 (567)
T ss_pred -----------------------------HccCCH------HHHHHhcchhHHHHHHhhcccccccCcccCcchhHHHHH
Confidence 111 11 245555666788899999999998775332 2 57899
Q ss_pred HHHHHHHCCCeEee
Q psy6783 487 LVPYLEKKGLLELD 500 (1119)
Q Consensus 487 vi~~L~~kG~~~e~ 500 (1119)
++.+|-++|++-+.
T Consensus 119 iF~kl~~ng~~se~ 132 (567)
T KOG1247|consen 119 IFSKLYDNGYLSEQ 132 (567)
T ss_pred HhhchhhcCCcccc
Confidence 99999999987654
No 188
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=62.11 E-value=4.7 Score=49.13 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=24.7
Q ss_pred EEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 140 VLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 140 v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
|..=| -++| ||+| ||| |+|.|++--..||
T Consensus 10 v~tRF-APsP---tG~L--HiG-~artAl~N~~~Ar 38 (472)
T COG0008 10 VRTRF-APSP---TGYL--HIG-HARTALLNYLYAR 38 (472)
T ss_pred eEEEE-CcCC---CCcc--chH-HHHHHHHHHHHHH
Confidence 55555 3699 9999 999 9999999999985
No 189
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=59.81 E-value=4.9 Score=39.37 Aligned_cols=17 Identities=53% Similarity=0.669 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHhhCC
Q psy6783 844 LLYAYTRIASIARTAGI 860 (1119)
Q Consensus 844 l~y~~~rl~si~rk~g~ 860 (1119)
+||+|+|++||+||++.
T Consensus 1 iqY~~~Ri~nIl~k~~~ 17 (122)
T smart00836 1 VQYAHARICSILRKAGE 17 (122)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 68999999999999874
No 190
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=58.82 E-value=5.9 Score=44.14 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=16.5
Q ss_pred CceeeeeeEEECCCCcccccccCC
Q psy6783 745 RMDFVGFGVVLGEDRKKFKTRSGD 768 (1119)
Q Consensus 745 ~~~h~~fg~V~~~~~~~~str~G~ 768 (1119)
.+.|++ ++++.+|.+||+|+|.
T Consensus 148 ~~~h~p--ll~~~~g~KLSKR~~~ 169 (239)
T cd00808 148 KFAHLP--LILNPDGKKLSKRKGD 169 (239)
T ss_pred ceEeec--cccCCCCCcccCCCCC
Confidence 566654 6777788899999986
No 191
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=58.27 E-value=6 Score=48.76 Aligned_cols=30 Identities=23% Similarity=0.564 Sum_probs=26.1
Q ss_pred eEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 139 RVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 139 ~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
+|..=| -++| ||+| ||| |+|+|++.-.+||
T Consensus 11 ~v~tRF-APsP---tG~L--HiG-haraAlln~l~Ar 40 (523)
T PLN03233 11 QIVTRF-PPEP---SGYL--HIG-HAKAALLNDYYAR 40 (523)
T ss_pred eEEEee-CCCC---CCcc--cHH-HHHHHHHHHHHHH
Confidence 466666 5799 9999 999 9999999999997
No 192
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=56.60 E-value=6.6 Score=45.18 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.9
Q ss_pred CCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 146 SPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 146 SANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
-++| |||| |+| |+|.|++.-..||
T Consensus 11 APSP---TG~L--HlG-~~rtAL~n~l~Ar 34 (299)
T PRK05710 11 APSP---SGPL--HFG-SLVAALGSWLDAR 34 (299)
T ss_pred CcCC---CCcc--cHH-HHHHHHHHHHHHH
Confidence 4689 9999 999 9999999998885
No 193
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=55.69 E-value=7 Score=48.49 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=26.7
Q ss_pred eEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHH
Q psy6783 139 RVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEE 176 (1119)
Q Consensus 139 ~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~ 176 (1119)
+|..=| .++| ||+| ||| |+|+|++...+||-
T Consensus 51 kv~tRF-aPsP---tG~L--HiG-haraalln~~~Ar~ 81 (574)
T PTZ00437 51 KPYFRF-PPEP---NGFL--HIG-HAKSMNLNFGSARA 81 (574)
T ss_pred cEEEEe-CCCC---CCcc--cHH-HHHHHHHHHHHHHH
Confidence 466666 5799 9999 999 99999999999973
No 194
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=55.29 E-value=7.2 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=22.4
Q ss_pred CCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 146 SPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 146 SANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
.++| ||+| ||| |+|+|++-..+||
T Consensus 6 aPsP---tG~L--HiG-~ar~al~n~~~A~ 29 (522)
T TIGR00440 6 PPEP---NGYL--HIG-HAKSICLNFGYAK 29 (522)
T ss_pred CCCC---CCcc--cHH-HHHHHHHHHHHHH
Confidence 3689 9999 999 9999999999997
No 195
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=54.19 E-value=7.6 Score=48.50 Aligned_cols=32 Identities=31% Similarity=0.634 Sum_probs=27.5
Q ss_pred CceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 137 KLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 137 ~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
+.+|..=| -++| ||+| ||| |+|+|++.--+||
T Consensus 50 ~~~v~tRF-APsP---tGyL--HIG-haraAllN~l~Ar 81 (601)
T PTZ00402 50 EGKVVTRF-PPEA---SGFL--HIG-HAKAALINSMLAD 81 (601)
T ss_pred CCeeEEee-CCCC---CCcc--cHH-HHHHHHHHHHHHH
Confidence 34577766 5799 9999 999 9999999999997
No 196
>KOG2007|consensus
Probab=53.70 E-value=1e+02 Score=37.80 Aligned_cols=113 Identities=23% Similarity=0.210 Sum_probs=73.6
Q ss_pred ccchhhhhhhhhhHHHHHHHHH-HcCCceee-ecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCc
Q psy6783 556 GVHFRLLEESTIIGDTISRLLE-YLGHDVVR-LNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDE 633 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~-~~G~~V~r-~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~ 633 (1119)
.-|+||. ||-+==|-|.|+|+ ++||+|+= +|.+ | -
T Consensus 68 ~SHmGHA-rsYVsfDIlrRiL~dyfgy~V~~vmNiT-D-----------------------------------------V 104 (586)
T KOG2007|consen 68 SSHMGHA-RSYVSFDILRRILRDYFGYDVTFVMNIT-D-----------------------------------------V 104 (586)
T ss_pred hhhhhhh-hhhhhHHHHHHHHHHHcCcceEEEeccc-c-----------------------------------------h
Confidence 3599995 99999999999999 99999854 3331 2 0
Q ss_pred cHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccc-cc-cccchhhhhHHHHHHHHHhcCCeeeecC
Q psy6783 634 DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL-TE-RGESFYQKHMEQLVPYLEKKGNLSLTKK 711 (1119)
Q Consensus 634 d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~F-d~-~gES~y~~~~~~vi~~l~~~g~~~~~~~ 711 (1119)
|.-+-+|||.. .+.|.+ +.+=+.|| .=-++|.+=-++|||-= |+ ..=|.|.+.+-..|+++.++|.++..+|
T Consensus 105 DDKII~RAr~~-~m~e~~----~~l~~~F~-~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dG 178 (586)
T KOG2007|consen 105 DDKIIKRARKE-EMGEKP----LSLSERFC-YYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDG 178 (586)
T ss_pred hHHHHHHhhhh-hhccch----hhHHHHHH-HHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCC
Confidence 11112222200 111111 22223345 44578888899999954 44 5667788888888899999999999966
Q ss_pred ceEEEE
Q psy6783 712 LGIVYV 717 (1119)
Q Consensus 712 ~~~v~v 717 (1119)
.+..+|
T Consensus 179 sVYFdv 184 (586)
T KOG2007|consen 179 SVYFDV 184 (586)
T ss_pred cEEEec
Confidence 644444
No 197
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=52.18 E-value=8.6 Score=46.47 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=21.5
Q ss_pred CCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 147 PNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 147 ANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
++| ||+| ||| |+|.|++--..||
T Consensus 6 PSP---TG~L--HiG-~artAL~n~l~Ar 28 (433)
T PRK12410 6 PSP---TGDM--HIG-NLRAAIFNYIVAK 28 (433)
T ss_pred CCC---CCcc--cHH-HHHHHHHHHHHHH
Confidence 689 9999 999 9999999999985
No 198
>PLN02907 glutamate-tRNA ligase
Probab=51.75 E-value=8.6 Score=49.41 Aligned_cols=31 Identities=26% Similarity=0.508 Sum_probs=27.1
Q ss_pred ceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 138 LRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 138 ~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
.+|..=| -++| ||+| ||| |+|+|++....||
T Consensus 212 ~~v~tRF-aPsP---tG~L--HiG-~ar~al~n~~~Ar 242 (722)
T PLN02907 212 GKVCTRF-PPEP---SGYL--HIG-HAKAALLNQYFAR 242 (722)
T ss_pred CceEEee-CCCC---CCcc--cHH-HHHHHHHHHHHHH
Confidence 3577766 4699 9999 999 9999999999997
No 199
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=46.59 E-value=12 Score=45.81 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=49.8
Q ss_pred CeEEEecCCCcccchhhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccC
Q psy6783 515 PMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVG 590 (1119)
Q Consensus 515 ~~VL~KSDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylG 590 (1119)
+.||+||||+|||. +|++.+++. .+++++| .|.+|..|..+ ...+++++||..-..-|+.
T Consensus 173 D~Vl~RsdG~ptY~---~A~~vdD~~-~~ithvI--rG~d~~~~t~~----------~~~l~~aLg~~~p~~~H~p 232 (470)
T TIGR00464 173 DFVILRSDGSPTYN---FAVVVDDYL-MKITHVI--RGEDHISNTPK----------QILIYQALGWKIPVFAHLP 232 (470)
T ss_pred CeEEEecCCCcccc---cHHHHHHHh-CCCCEEE--ECchhhcCHHH----------HHHHHHHcCCCCCeEEEEe
Confidence 47999999999999 999999985 4899999 99988887765 3578999999866555543
No 200
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=45.81 E-value=13 Score=45.67 Aligned_cols=57 Identities=23% Similarity=0.230 Sum_probs=45.7
Q ss_pred CeEEEecCCCcccchhhH-HHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecc
Q psy6783 515 PMTIVKSDGGFTYDTSDL-AAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588 (1119)
Q Consensus 515 ~~VL~KSDGt~tY~t~DI-Ay~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~Ny 588 (1119)
+.||+||||+|||.++|+ ++|..++ +++| .|.+|..|..+ ...+++++||+.-..=|
T Consensus 183 D~Vl~RsDG~ptY~~a~vVdD~~~~i-----thvI--rG~d~~~~t~~----------q~~l~~alG~~~p~~~H 240 (476)
T PRK01406 183 DFVILRSDGTPTYNFAVVVDDHLMGI-----THVI--RGEDHLSNTPK----------QILLYEALGWEVPVFAH 240 (476)
T ss_pred CcEEEecCCCccccchHHHHHHHcCC-----CEEE--ECchhhcCHHH----------HHHHHHHhCCCCCeEEE
Confidence 479999999999999999 9998764 7888 89887776654 35789999987544444
No 201
>PLN02859 glutamine-tRNA ligase
Probab=43.35 E-value=14 Score=47.51 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=26.8
Q ss_pred eEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHH
Q psy6783 139 RVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEE 176 (1119)
Q Consensus 139 ~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~ 176 (1119)
+|..=| .++| ||+| ||| |+|+|++--.+||-
T Consensus 264 ~V~tRF-aPsP---tG~L--HiG-haraallN~~~Ar~ 294 (788)
T PLN02859 264 KVYTRF-PPEP---NGYL--HIG-HAKAMFVDFGLAKE 294 (788)
T ss_pred ceEEEe-CCCC---CCcc--cHH-HHHHHHHHHHHHHH
Confidence 466666 5799 9999 999 99999999999974
No 202
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=42.76 E-value=15 Score=45.28 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=20.7
Q ss_pred CCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 146 SPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 146 SANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
-+.| ||+| ||| |+|.|++--..||
T Consensus 10 APSP---TG~l--HiG-~artAL~n~l~Ar 33 (513)
T PRK14895 10 APSP---TGFL--HIG-SARTALFNYLFAR 33 (513)
T ss_pred CCCC---CCCc--cHH-HHHHHHHHHHHHH
Confidence 4688 9999 999 9999999888886
No 203
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=41.81 E-value=6.8e+02 Score=29.91 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=40.4
Q ss_pred cCCcchhhHHHHHHHHHc----CCCCCCCCCceeeeeeEEECCCCccccccc-CCeeeHHHHHHHHH
Q psy6783 719 DLGQGVHFRLLEECAKKA----GILNPNKTRMDFVGFGVVLGEDRKKFKTRS-GDTVKLSELLDEGL 780 (1119)
Q Consensus 719 d~~~~~h~~~l~~~~~~~----g~~~~~~~~~~h~~fg~V~~~~~~~~str~-G~~v~l~~ll~~~~ 780 (1119)
..-|.-|+++.+.++.++ |+..|. ..|. .++.+-+|+|||+++ +++++|+|.-++..
T Consensus 210 G~DQ~~h~~ltRdiA~r~n~~~gf~~P~---~l~~--~~lpgL~G~KMSkS~~~s~I~L~D~p~~I~ 271 (368)
T PRK12285 210 GIDQDPHIRLTRDIAERLHGGYGFIKPS---STYH--KFMPGLTGGKMSSSKPESAIYLTDDPETVK 271 (368)
T ss_pred ccchHHHHHHHHHHHHHHhhhcCCCCch---hHhh--hcccCCCCCcCCCCCCCCeeeccCCHHHHH
Confidence 334678999999999998 876552 2222 256677778999998 67899988655443
No 204
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=40.67 E-value=20 Score=41.90 Aligned_cols=42 Identities=21% Similarity=0.410 Sum_probs=27.9
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHH
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi 387 (1119)
|+.--|||+||+||+= ++.- +.++-+ +|++ ....|+||=.++
T Consensus 34 ~~G~~PTG~lHLG~~~-~~~~--~~~lq~-~g~~--~~i~IaD~ha~~ 75 (329)
T PRK08560 34 YIGFEPSGKIHLGHLL-TMNK--LADLQK-AGFK--VTVLLADWHAYL 75 (329)
T ss_pred EEccCCCCcchhhhhH-HHHH--HHHHHH-CCCe--EEEEEccchhhc
Confidence 7999999999999942 2222 444443 5776 467788864433
No 205
>PF15540 Toxin_62: Putative toxin 62
Probab=40.23 E-value=24 Score=34.20 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=24.9
Q ss_pred CCCCCCCceEEEEeeCCCccc------------cCCcccCCCC
Q psy6783 131 PPTLNKKLRVLVDFSSPNIAR------------KGGFLYPHLP 161 (1119)
Q Consensus 131 ~g~~~~~~~v~vE~vSANP~~------------~tg~l~~hig 161 (1119)
||.-..|+++.|||.+.|-|+ .+||-+||||
T Consensus 45 w~kd~~gks~pvE~~gpNGA~Vn~D~p~~~~~~~~Gpd~PHiG 87 (113)
T PF15540_consen 45 WGKDKNGKSFPVEWRGPNGAEVNIDIPHLDGDLKEGPDVPHIG 87 (113)
T ss_pred ccccCCCccceEEEeCCCCceeeccccccccccccCCCCCccc
Confidence 565557888999999999554 4699999999
No 206
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=39.50 E-value=18 Score=41.00 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=30.6
Q ss_pred eeCCCCCC-CccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHH
Q psy6783 340 FSSPNIAK-EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387 (1119)
Q Consensus 340 fsSpNptk-pLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi 387 (1119)
|+.--||| .||+||+-.+ ..+.++.+ +|++| ...|+||=..+
T Consensus 4 y~G~~PTg~~lHLG~~~~~---~~~~~lq~-~g~~~--~ilI~D~~a~~ 46 (269)
T cd00805 4 YIGFDPTAPSLHLGHLVPL---MKLRDFQQ-AGHEV--IVLIGDATAMI 46 (269)
T ss_pred EEeeCCCCCcccHHHHHHH---HHHHHHHH-CCCeE--EEEECCCeeec
Confidence 56778999 8999997743 25666666 48876 67788875544
No 207
>PLN02627 glutamyl-tRNA synthetase
Probab=38.81 E-value=19 Score=44.61 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=27.3
Q ss_pred CceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 137 KLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 137 ~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
..+|.+=| -+.| ||+| ||| |+|.|++.-..||
T Consensus 43 ~~~vr~RF-APSP---TG~L--HiG-~aRtAL~n~l~Ar 74 (535)
T PLN02627 43 GGPVRVRF-APSP---TGNL--HVG-GARTALFNYLFAR 74 (535)
T ss_pred CCceEEEe-CCCC---CCCc--cHH-HHHHHHHHHHHHH
Confidence 34577777 3599 9999 999 9999999999996
No 208
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=37.00 E-value=29 Score=41.48 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=29.6
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHH
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi 387 (1119)
|+.--|||++|+|| +++----+..+ ..+||+| .+.|.||=.++
T Consensus 70 ~~G~~PTG~lHLG~--g~i~~~~~~~l-q~~G~~v--~~~IaD~hA~~ 112 (383)
T PTZ00126 70 YDGFEPSGRMHIAQ--GILKAINVNKL-TKAGCVF--VFWVADWFALL 112 (383)
T ss_pred EEEECCCCcccccc--hHhHhHHHHHH-HhCCCeE--EEEEccceeec
Confidence 88899999999999 22222344454 5668864 56688876544
No 209
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=36.02 E-value=23 Score=41.38 Aligned_cols=40 Identities=20% Similarity=0.455 Sum_probs=30.5
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchh
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~ 385 (1119)
|+.--|||.+|+|| .+|-...+.+...|++| ...|.||=.
T Consensus 6 ~~G~~PTG~~HlG~----~l~~~~~~~~~q~~~~~--~i~IaD~ha 45 (328)
T TIGR00233 6 LTGIQPSGKMHLGH----YLGAIQTKWLQQFGVEL--FICIADLHA 45 (328)
T ss_pred EEeeCCCcHhHHHH----HHHHHHHHHHHhCCCCE--EEEeecchh
Confidence 67889999999999 56666666766788875 566888643
No 210
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=36.01 E-value=28 Score=42.68 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCccc
Q psy6783 116 YAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSSS 188 (1119)
Q Consensus 116 ~~~~~~~~il~~g~~~g~~~~~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~~~ 188 (1119)
|...++++|++.... ..++|| +-.-| .|+. ||| +.|-.+.||+++|.|+..|+++...|
T Consensus 4 Wad~~A~ki~~~~~~-------~~~~v~-tGisP---SG~~--HIG-n~rEv~t~d~V~ralr~~g~~~r~I~ 62 (521)
T COG1384 4 WADVIAKKIIEERPE-------DEYVVA-TGISP---SGLI--HIG-NFREVLTADAVRRALRDRGDEVRLIY 62 (521)
T ss_pred chHHHHHHHHhcCCC-------CcEEEe-cCcCC---CCCc--ccc-cHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 445566676662111 335554 23367 8889 999 99999999999999999999666544
No 211
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=31.86 E-value=39 Score=40.29 Aligned_cols=43 Identities=26% Similarity=0.442 Sum_probs=31.1
Q ss_pred eeCCCCCC-CccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHH
Q psy6783 340 FSSPNIAK-EMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388 (1119)
Q Consensus 340 fsSpNptk-pLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~ 388 (1119)
|+.--||| .||+||+= --..+.++ ..+||+|.-. |+||=.++|
T Consensus 34 y~G~dPTg~~lHlGh~v---~l~~l~~l-q~~G~~~~il--igd~ta~ig 77 (377)
T TIGR00234 34 YVGFDPTAPSLHLGHLV---PLLKLRDF-QQAGHEVIVL--LGDATALIG 77 (377)
T ss_pred EEeeCCCCCCccHHHHH---HHHHHHHH-HHCCCcEEEE--Eeccchhhc
Confidence 88899999 89999944 22334444 4579988654 899877665
No 212
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=28.63 E-value=46 Score=42.62 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=30.3
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHH
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi 387 (1119)
|+.--|||+||+|| .++|-.--+.+.-.||+ ..+.|.||=.++
T Consensus 36 ~sGi~PTG~lHLGn---g~~~aik~~~~~q~g~~--~~~lIAD~HAlt 78 (682)
T PTZ00348 36 YDGFEPSGRMHIAQ---GIFKAVNVNKCTQAGCE--FVFWVADWFALM 78 (682)
T ss_pred EEeeCCCCcCeecc---HHHHHHHHHHHHhCCCe--EEEEEcchhhhc
Confidence 88999999999999 36663333344567886 456788875544
No 213
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=27.86 E-value=35 Score=28.95 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=16.5
Q ss_pred HHHHHcCCceeeecccCcchh
Q psy6783 574 RLLEYLGHDVVRLNHVGDWGT 594 (1119)
Q Consensus 574 ~l~~~~G~~V~r~NylGDwG~ 594 (1119)
++|+++||+|+.++|. +|-.
T Consensus 25 r~L~~~G~~Vi~Ip~~-eW~~ 44 (58)
T PF08373_consen 25 RHLKALGYKVISIPYY-EWNK 44 (58)
T ss_pred HHHHHCCCEEEEecHH-HHHh
Confidence 7899999999999985 4433
No 214
>KOG0432|consensus
Probab=26.55 E-value=47 Score=43.01 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=32.4
Q ss_pred eCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCc
Q psy6783 145 SSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSS 186 (1119)
Q Consensus 145 vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~ 186 (1119)
+++-| ..||-| ||| |+=...|=|+|+|.=|..||.|.-
T Consensus 80 ~~PPP-NVTG~L--HiG-HALt~aiqD~i~R~~rm~G~~vlw 117 (995)
T KOG0432|consen 80 PLPPP-NVTGSL--HIG-HALTVAIQDALARYNRMHGYQVLW 117 (995)
T ss_pred ecCCC-Cccccc--chh-HHHHHHHHHHHHHHHHhcCCeeee
Confidence 34544 569999 999 999999999999999999997643
No 215
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.96 E-value=70 Score=37.23 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=39.3
Q ss_pred cchhhHHHHHHHHHcC------CCCCCCCCceeeeeeEEECCCC-cccccccCC-eeeHHHHHHHHHH
Q psy6783 722 QGVHFRLLEECAKKAG------ILNPNKTRMDFVGFGVVLGEDR-KKFKTRSGD-TVKLSELLDEGLR 781 (1119)
Q Consensus 722 ~~~h~~~l~~~~~~~g------~~~~~~~~~~h~~fg~V~~~~~-~~~str~G~-~v~l~~ll~~~~~ 781 (1119)
|..|+++-+.++++.+ +..|. -+.+=. +.|-+-+| +|||.++++ +++|.|.=+...+
T Consensus 155 Q~qHleLtRDiA~rfn~~y~~~f~~P~--~~~~~~-~~i~gL~g~~KMSkS~~ns~I~L~D~~~~i~k 219 (314)
T COG0180 155 QDQHLELTRDIARRFNHLYGEVFPLPE--ALISKV-ARLPGLDGPGKMSKSDPNSAIFLLDDPKTIRK 219 (314)
T ss_pred chHHHHHHHHHHHHHHhhcCCccCCcc--ccccCC-CcccCCCCCCcccccCCCCeeeccCCHHHHHH
Confidence 6789999999999886 33332 122211 45656566 899999999 8999887655543
No 216
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=24.96 E-value=55 Score=37.21 Aligned_cols=25 Identities=20% Similarity=0.077 Sum_probs=19.7
Q ss_pred eEEECCCCcccccccCCeeeHHHHH
Q psy6783 752 GVVLGEDRKKFKTRSGDTVKLSELL 776 (1119)
Q Consensus 752 g~V~~~~~~~~str~G~~v~l~~ll 776 (1119)
+++.+.+|.|||.++|+++.+..+.
T Consensus 189 p~l~~l~G~KMSKS~~~~i~l~~~~ 213 (273)
T cd00395 189 PLVTKLDGPKFGKSESGPKWLDTEK 213 (273)
T ss_pred ccccCCCCCcCCCCCCCCccccccC
Confidence 4788888899999999988765443
No 217
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=24.89 E-value=51 Score=39.73 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=30.8
Q ss_pred EEeeCCCCCCC-ccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHH
Q psy6783 338 VDFSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388 (1119)
Q Consensus 338 VEfsSpNptkp-LHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~ 388 (1119)
.=|+.--||++ ||+||+ +.--.+.++- -+||+| ...|+||=.++|
T Consensus 35 ~iy~G~dPT~~sLHlGhl---v~l~~l~~lq-~~G~~~--~~ligd~ta~ig 80 (410)
T PRK13354 35 TLYLGFDPTAPSLHIGHL---VPLMKLKRFQ-DAGHRP--VILIGGFTGKIG 80 (410)
T ss_pred EEEEcccCCCCCcchhhH---HHHHHHHHHH-HcCCeE--EEEEcccccccC
Confidence 34888999996 999993 3334455544 568875 677888755543
No 218
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=24.58 E-value=61 Score=39.05 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=30.1
Q ss_pred EeeCCCCCCC-ccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHH
Q psy6783 339 DFSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388 (1119)
Q Consensus 339 EfsSpNptkp-LHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~ 388 (1119)
=|+.--|||+ ||+||+=. =..+.++ ...||+| ..-|+||=.++|
T Consensus 36 vy~G~dPTg~slHlGhlv~---l~~l~~l-Q~~G~~~--~~ligd~ta~ig 80 (408)
T PRK05912 36 IYLGFDPTAPSLHLGHLVP---LLKLRRF-QDAGHKP--IALIGGFTGMIG 80 (408)
T ss_pred EEEeecCCCCCccHHhHHH---HHHHHHH-HHCCCcE--EEEEcCceeEcC
Confidence 4788899996 99999652 2344444 4568875 567888766553
No 219
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=22.60 E-value=97 Score=29.68 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCCCeEeeCCCeEEEcCCCCCCCeEEEecCCCcccchhhHHHHH
Q psy6783 483 HMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIR 536 (1119)
Q Consensus 483 ~v~~vi~~L~~kG~~~e~dGA~~~~~ddkd~~~~VL~KSDGt~tY~t~DIAy~~ 536 (1119)
.+.+++++|++.|++..-+|..+...+-+- .|.--++.++||=-+| ..|.+.
T Consensus 37 ~v~~~l~~Le~~GLler~~g~~iK~~~~k~-K~~~e~~~hHtYY~LT-r~G~~l 88 (92)
T PF10007_consen 37 EVREALEKLEEMGLLERVEGKTIKRSEAKF-KPKKEVHKHHTYYRLT-REGELL 88 (92)
T ss_pred HHHHHHHHHHHCCCeEEecCcccchhhhhc-ccchhhhcCCceeeec-HhHHHH
Confidence 588999999999999999998775543222 2333566677754333 344443
No 220
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=21.24 E-value=47 Score=37.87 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=21.9
Q ss_pred eeeeEEECCCCc-ccccccCC-eeeHHHHHHHH
Q psy6783 749 VGFGVVLGEDRK-KFKTRSGD-TVKLSELLDEG 779 (1119)
Q Consensus 749 ~~fg~V~~~~~~-~~str~G~-~v~l~~ll~~~ 779 (1119)
+-..++.+.+|. |||.++|+ +++|.|--++.
T Consensus 185 l~~~~l~~l~G~~KMSKS~~ns~I~L~d~~~~i 217 (292)
T PF00579_consen 185 LTSPLLPGLDGQKKMSKSDPNSAIFLDDSPEEI 217 (292)
T ss_dssp EEETCBBSTTSSSBTTTTTTGGS-BTTTTHHHH
T ss_pred eeeccccccCCccccCccCCccEEEEeccchhH
Confidence 333467777777 99999999 89998764433
No 221
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=21.17 E-value=50 Score=38.64 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCc
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~ 383 (1119)
|+.--|||+||+||.=+++ .-+.++-+. ++|. ..|.||
T Consensus 5 ~~G~~PTG~lHLG~~~g~~--~~~~~lQ~~--~~~~--~~IaD~ 42 (333)
T PRK00927 5 LSGIQPTGKLHLGNYLGAI--KNWVELQDE--YECF--FCIADL 42 (333)
T ss_pred EEeeCCCccchHHhHHHHH--HHHHHHHhc--CCeE--EEEecH
No 222
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=20.64 E-value=82 Score=35.96 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=0.0
Q ss_pred eeCCCCCCCccccccchhcHH-HHHHHHHHHcCCcEEEecccCCc
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIG-DTISRLLEYLGHDVVRLNHVGDW 383 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiG-DsLaril~~~Gy~V~renyInD~ 383 (1119)
|+.--|||.||+|| .+| =-...-|+.+|++|.-. |+||
T Consensus 3 ~tG~~PTG~lHLG~----~~~al~~~~~lQ~ag~~~~~~--IaD~ 41 (280)
T cd00806 3 LSGIQPSGSLHLGH----YLGAFRFWVWLQEAGYELFFF--IADL 41 (280)
T ss_pred EEeeCCCchhhHHH----HHHHHHHHHHHHhCCCCEEEE--ecch
No 223
>KOG0434|consensus
Probab=20.57 E-value=2.6e+02 Score=35.75 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=31.5
Q ss_pred HHHHHHHHHhc--ccccccccchhhhhHHHH---HHHHHhcCCee
Q psy6783 668 RDFQKIYDRLN--VTLTERGESFYQKHMEQL---VPYLEKKGNLS 707 (1119)
Q Consensus 668 ~~~~~~Y~rL~--V~Fd~~gES~y~~~~~~v---i~~l~~~g~~~ 707 (1119)
.+.+++-.||| |.||.++--.|-.-|++| -++|-++|+++
T Consensus 128 sEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVY 172 (1070)
T KOG0434|consen 128 SEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVY 172 (1070)
T ss_pred HHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCcee
Confidence 46678999997 688877878887777775 48899999965
No 224
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=20.07 E-value=78 Score=37.13 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=26.2
Q ss_pred eeCCCCCCCccccccchhcHHHHHHH-HHHHcCCcEEEecccCCchhH
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISR-LLEYLGHDVVRLNHVGDWGTQ 386 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLar-il~~~Gy~V~renyInD~G~Q 386 (1119)
|+.--|||++|+||. +|-.... -|...|. | ...|.||=.+
T Consensus 6 ~sG~~PTG~~HLGn~----l~~~~~~~~lQ~~~~-~--~i~IaD~ha~ 46 (333)
T PRK12282 6 LTGDRPTGKLHLGHY----VGSLKNRVALQNEHE-Q--FVLIADQQAL 46 (333)
T ss_pred EEeeCCCCcchHHHH----HHHHHHHHHHHhCCC-E--EEEEccchhH
Confidence 677789999999994 4422222 4555564 4 5778887543
Done!