Query psy6783
Match_columns 1119
No_of_seqs 464 out of 2376
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 18:18:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7u_A Arginyl-tRNA synthetase 100.0 8E-110 3E-114 1009.4 48.0 586 171-1119 5-607 (607)
2 2zue_A Arginyl-tRNA synthetase 100.0 3E-104 9E-109 966.7 48.8 568 204-1119 2-629 (629)
3 1iq0_A Arginyl-tRNA synthetase 100.0 2E-94 6.8E-99 876.8 49.6 543 207-1119 2-592 (592)
4 3fnr_A Arginyl-tRNA synthetase 100.0 2E-86 7E-91 781.3 43.6 434 306-1119 1-454 (464)
5 1f7u_A Arginyl-tRNA synthetase 100.0 4.3E-34 1.5E-38 346.8 18.5 269 546-902 145-426 (607)
6 2zue_A Arginyl-tRNA synthetase 99.9 3.1E-28 1.1E-32 297.4 14.0 153 10-186 4-161 (629)
7 3fnr_A Arginyl-tRNA synthetase 99.9 6.6E-27 2.3E-31 275.7 17.6 223 556-884 44-276 (464)
8 4dlp_A Aminoacyl-tRNA syntheta 99.9 1.4E-25 4.6E-30 270.5 27.3 121 333-505 24-147 (536)
9 3kfl_A Methionyl-tRNA syntheta 99.9 9.8E-25 3.3E-29 264.4 22.0 123 331-505 23-148 (564)
10 1iq0_A Arginyl-tRNA synthetase 99.9 5.3E-26 1.8E-30 276.5 8.1 144 10-186 1-145 (592)
11 1li5_A Cysrs, cysteinyl-tRNA s 99.9 3.4E-23 1.2E-27 244.8 30.0 125 332-508 19-146 (461)
12 3h99_A Methionyl-tRNA syntheta 99.9 1.3E-22 4.3E-27 245.9 24.8 138 962-1116 367-509 (560)
13 2csx_A Methionyl-tRNA syntheta 99.9 3.6E-21 1.2E-25 230.0 20.2 121 333-505 4-129 (497)
14 2d5b_A Methionyl-tRNA syntheta 99.8 1.5E-20 5.1E-25 224.7 19.5 121 333-505 2-127 (500)
15 2x1l_A Methionyl-tRNA syntheta 99.8 3.9E-19 1.3E-23 213.7 30.9 123 331-505 9-134 (524)
16 3gdz_A Arginyl-tRNA synthetase 99.8 1.7E-20 5.8E-25 179.9 10.3 108 7-132 2-109 (109)
17 3gdz_A Arginyl-tRNA synthetase 99.8 4E-19 1.4E-23 170.4 13.3 104 203-323 2-105 (109)
18 2o5r_A Glutamyl-tRNA synthetas 99.7 1.4E-16 4.9E-21 188.6 10.6 56 334-391 11-72 (481)
19 3tqo_A Cysteinyl-tRNA syntheta 99.6 2.5E-15 8.7E-20 176.6 15.0 127 332-510 22-151 (462)
20 3c8z_A Cysteinyl-tRNA syntheta 99.6 7.6E-16 2.6E-20 180.0 10.4 125 333-509 37-167 (414)
21 1rqg_A Methionyl-tRNA syntheta 99.6 4.4E-13 1.5E-17 166.6 32.0 118 334-503 2-123 (722)
22 3al0_C Glutamyl-tRNA(Gln) amid 99.5 3.6E-13 1.2E-17 162.9 15.2 166 309-553 104-323 (592)
23 1ffy_A Isoleucyl-tRNA syntheta 99.3 1.3E-09 4.6E-14 138.5 30.8 129 333-501 47-180 (917)
24 1wkb_A Leucyl-tRNA synthetase; 99.2 1.5E-11 5.2E-16 155.0 11.5 143 333-504 33-183 (810)
25 3u1f_A Methionyl-tRNA syntheta 99.2 4.4E-09 1.5E-13 126.8 27.9 120 331-502 6-128 (542)
26 3sp1_A Cysteinyl-tRNA syntheta 99.0 4.1E-10 1.4E-14 133.3 9.1 130 335-506 42-173 (501)
27 1irx_A Lysyl-tRNA synthetase; 98.9 4.8E-10 1.6E-14 134.8 4.8 136 312-495 4-147 (523)
28 1li5_A Cysrs, cysteinyl-tRNA s 98.9 4.6E-09 1.6E-13 124.3 12.5 119 546-717 23-146 (461)
29 3afh_A Glutamyl-tRNA synthetas 98.9 2.3E-08 8E-13 118.5 17.9 88 460-553 79-219 (488)
30 4arc_A Leucine--tRNA ligase; l 98.8 1.6E-08 5.4E-13 127.6 15.2 145 308-504 25-176 (880)
31 1nzj_A Hypothetical protein YA 98.8 7.7E-09 2.6E-13 115.6 9.6 115 460-590 59-219 (298)
32 2v0c_A Aminoacyl-tRNA syntheta 98.7 4.9E-08 1.7E-12 123.7 12.9 122 938-1073 638-760 (878)
33 1ile_A Ilers, isoleucyl-tRNA s 98.7 2.8E-08 9.4E-13 125.6 9.0 136 333-503 37-177 (821)
34 3c8z_A Cysteinyl-tRNA syntheta 98.5 3.5E-07 1.2E-11 106.9 12.0 112 546-710 40-155 (414)
35 1gax_A Valrs, valyl-tRNA synth 98.4 6.9E-07 2.4E-11 112.9 12.4 134 333-502 33-171 (862)
36 2ja2_A Glutamyl-tRNA synthetas 98.4 1.8E-06 6.2E-11 102.5 15.0 86 745-839 243-330 (498)
37 4g6z_A Glutamate-tRNA ligase; 98.4 2.6E-06 8.9E-11 100.8 15.1 87 735-838 243-335 (490)
38 3kfl_A Methionyl-tRNA syntheta 98.4 8.8E-07 3E-11 107.4 10.8 126 939-1076 341-468 (564)
39 4dlp_A Aminoacyl-tRNA syntheta 98.3 1.6E-06 5.5E-11 104.5 12.9 156 939-1112 323-482 (536)
40 3tqo_A Cysteinyl-tRNA syntheta 98.3 1.3E-06 4.3E-11 103.1 11.5 115 547-714 27-146 (462)
41 4gri_A Glutamate--tRNA ligase; 98.2 2.2E-06 7.7E-11 102.5 10.7 87 735-838 252-345 (512)
42 1j09_A Glutamyl-tRNA synthetas 98.2 1.2E-05 4.1E-10 95.0 15.6 24 342-365 7-30 (468)
43 2x1l_A Methionyl-tRNA syntheta 98.2 5.7E-06 2E-10 99.3 12.5 128 939-1077 312-441 (524)
44 1wz2_A Leucyl-tRNA synthetase; 98.1 2.9E-06 1E-10 108.8 9.1 140 334-502 34-181 (967)
45 3sp1_A Cysteinyl-tRNA syntheta 98.1 7E-06 2.4E-10 97.4 10.3 126 547-715 44-173 (501)
46 3h99_A Methionyl-tRNA syntheta 98.0 2.7E-05 9.3E-10 94.3 12.4 119 545-716 17-142 (560)
47 2d5b_A Methionyl-tRNA syntheta 98.0 1.6E-05 5.5E-10 94.8 10.1 111 953-1076 310-422 (500)
48 2cfo_A Glutamyl-tRNA synthetas 97.9 0.00011 3.6E-09 87.5 15.3 38 735-778 226-263 (492)
49 2csx_A Methionyl-tRNA syntheta 97.9 2.5E-05 8.4E-10 93.2 9.3 123 939-1077 297-421 (497)
50 1wkb_A Leucyl-tRNA synthetase; 97.6 6E-05 2.1E-09 95.2 8.1 119 939-1076 652-772 (810)
51 3al0_C Glutamyl-tRNA(Gln) amid 97.2 0.00013 4.5E-09 88.5 3.9 59 113-181 104-162 (592)
52 1irx_A Lysyl-tRNA synthetase; 97.1 0.00029 9.9E-09 84.6 4.6 58 115-188 3-63 (523)
53 1rqg_A Methionyl-tRNA syntheta 97.0 0.0014 4.9E-08 81.6 9.9 124 938-1076 345-474 (722)
54 2v0c_A Aminoacyl-tRNA syntheta 96.9 0.0023 7.9E-08 81.3 11.0 103 556-711 47-154 (878)
55 4arc_A Leucine--tRNA ligase; l 96.7 0.0035 1.2E-07 79.4 10.0 108 951-1071 650-759 (880)
56 3u1f_A Methionyl-tRNA syntheta 96.4 0.0075 2.5E-07 72.5 10.4 125 939-1075 325-451 (542)
57 2o5r_A Glutamyl-tRNA synthetas 96.1 0.0019 6.5E-08 76.6 2.8 94 734-839 240-335 (481)
58 1ile_A Ilers, isoleucyl-tRNA s 96.1 0.0094 3.2E-07 75.3 9.1 119 556-710 52-175 (821)
59 1qtq_A GLNRS, protein (glutami 95.7 0.016 5.6E-07 69.3 8.2 47 311-365 9-55 (553)
60 2hz7_A Glutaminyl-tRNA synthet 95.4 0.017 5.7E-07 72.3 6.8 47 311-365 49-95 (851)
61 1nzj_A Hypothetical protein YA 95.3 0.0095 3.2E-07 66.5 4.2 45 664-708 54-100 (298)
62 3aii_A Glutamyl-tRNA synthetas 95.2 0.025 8.5E-07 67.8 7.5 39 461-499 151-190 (553)
63 1gax_A Valrs, valyl-tRNA synth 94.1 0.15 5E-06 64.8 10.9 120 938-1073 529-650 (862)
64 1ffy_A Isoleucyl-tRNA syntheta 93.8 0.08 2.7E-06 67.6 7.8 156 939-1112 597-757 (917)
65 1wz2_A Leucyl-tRNA synthetase; 93.4 0.18 6.2E-06 64.8 10.2 109 951-1075 661-771 (967)
66 2el7_A Tryptophanyl-tRNA synth 68.9 1.3 4.5E-05 50.1 1.0 39 340-383 5-44 (337)
67 4gri_A Glutamate--tRNA ligase; 62.4 2.8 9.5E-05 50.1 2.1 57 516-588 206-262 (512)
68 1qtq_A GLNRS, protein (glutami 60.6 5.2 0.00018 48.0 4.0 48 114-175 8-55 (553)
69 2dlc_X Tyrosyl-tRNA synthetase 60.2 3.2 0.00011 47.9 2.0 40 340-385 43-82 (394)
70 2cyb_A Tyrosyl-tRNA synthetase 59.1 3.1 0.0001 46.7 1.6 27 749-775 202-228 (323)
71 1n3l_A Tyrosyl-tRNA synthetase 56.4 4.1 0.00014 46.6 2.1 40 340-385 39-78 (372)
72 1i6k_A TRPRS, tryptophanyl-tRN 52.0 3.3 0.00011 46.6 0.4 38 340-383 5-42 (328)
73 4g6z_A Glutamate-tRNA ligase; 51.4 5.5 0.00019 47.2 2.0 58 516-589 197-254 (490)
74 2g36_A Tryptophanyl-tRNA synth 50.9 5.6 0.00019 45.0 1.9 41 340-385 16-56 (340)
75 2hz7_A Glutaminyl-tRNA synthet 50.7 10 0.00034 47.8 4.3 48 114-175 48-95 (851)
76 1j09_A Glutamyl-tRNA synthetas 48.3 6.6 0.00023 46.3 2.1 23 147-175 8-30 (468)
77 3aii_A Glutamyl-tRNA synthetas 46.7 7.2 0.00025 46.8 2.1 30 139-175 96-125 (553)
78 1yi8_B Tryptophanyl-tRNA synth 45.7 3.8 0.00013 46.5 -0.4 40 340-385 26-65 (351)
79 3afh_A Glutamyl-tRNA synthetas 44.9 8 0.00027 45.9 2.1 31 139-176 25-55 (488)
80 2ja2_A Glutamyl-tRNA synthetas 43.8 8.5 0.00029 45.7 2.1 29 140-175 7-35 (498)
81 2ts1_A Tyrosyl-tRNA synthetase 40.7 16 0.00056 42.3 3.8 42 340-387 34-76 (419)
82 2cya_A Tyrosyl-tRNA synthetase 39.7 10 0.00035 43.2 1.9 40 340-385 39-78 (364)
83 2cfo_A Glutamyl-tRNA synthetas 39.6 11 0.00036 44.8 2.0 23 147-175 8-30 (492)
84 2zp1_A Tyrosyl-tRNA synthetase 39.1 8.7 0.0003 42.9 1.1 38 340-383 32-69 (314)
85 2yxn_A Tyrosyl-tRNA synthetase 37.9 16 0.00055 40.9 3.0 42 340-387 37-79 (322)
86 1jil_A Tyrrs, tyrosyl-tRNA syn 36.2 17 0.00059 42.2 3.0 42 340-387 36-78 (420)
87 3tzl_A Tryptophanyl-tRNA synth 36.2 6.4 0.00022 44.1 -0.6 38 340-383 7-44 (322)
88 1y42_X Tyrosyl-tRNA synthetase 35.9 21 0.0007 41.2 3.6 42 340-387 68-110 (392)
89 3a04_A Tryptophanyl-tRNA synth 35.3 14 0.0005 42.1 2.2 38 340-383 74-111 (372)
90 2yy5_A Tryptophanyl-tRNA synth 34.5 8.4 0.00029 43.7 0.0 38 340-383 8-45 (348)
91 2ip1_A Tryptophanyl-tRNA synth 32.6 2.8E+02 0.0097 32.1 12.5 219 524-785 82-320 (432)
92 3jxe_A Tryptophanyl-tRNA synth 32.6 3.8E+02 0.013 30.6 13.4 57 718-779 213-272 (392)
93 1r6u_A Tryptophanyl-tRNA synth 31.4 5.5E+02 0.019 29.8 14.6 55 719-778 263-320 (437)
94 3sz3_A Tryptophanyl-tRNA synth 30.1 11 0.00039 42.5 0.1 38 340-383 10-47 (341)
95 3hzr_A Tryptophanyl-tRNA synth 29.8 28 0.00095 40.0 3.3 40 339-384 85-125 (386)
96 1r6t_A Tryptophanyl-tRNA synth 29.6 6.1E+02 0.021 29.7 14.8 55 720-779 311-368 (477)
97 2pid_A Tyrosyl-tRNA synthetase 27.9 22 0.00075 40.3 2.0 42 340-387 50-92 (356)
98 3hzr_A Tryptophanyl-tRNA synth 27.0 4.9E+02 0.017 29.7 13.0 61 712-778 225-287 (386)
99 3q4o_A Uncharacterized protein 25.5 76 0.0026 33.0 5.3 121 527-682 40-173 (196)
100 3p0j_A Tyrosyl-tRNA synthetase 25.5 28 0.00097 42.9 2.5 41 340-386 44-85 (690)
101 3vgj_A Tyrosyl-tRNA synthetase 24.3 30 0.001 39.5 2.3 38 340-383 60-98 (373)
102 1h3f_A Tyrosyl-tRNA synthetase 22.6 41 0.0014 39.2 3.0 43 340-388 41-84 (432)
103 2j5b_A Tyrosyl-tRNA synthetase 20.7 40 0.0014 38.0 2.3 41 340-385 44-84 (348)
No 1
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=7.6e-110 Score=1009.43 Aligned_cols=586 Identities=26% Similarity=0.392 Sum_probs=493.3
Q ss_pred HHHHHHHHHcCCCCCccccccccccccccCCCccccHHHHHHHHHHHHHHHhcCcC-CCCcceEeecCcccccCCccchh
Q psy6783 171 KAIAEEEKKQGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPEL-GDKTASVASTNEKYVHKFGDFQC 249 (1119)
Q Consensus 171 d~lar~~~~~G~~v~~~~~~~~~~~~~~~~~~~~m~i~~~l~~~i~~al~~~~~~~-~~~~~~ve~p~~~~~~~~GD~at 249 (1119)
..|.-.|...|.+.. .+ + |...--|++.+.+++.|.+++.+++... ......|+.|+++ +||||++
T Consensus 5 ~~~~~~~~~~~~~~~--~~-~-------~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~~~~---~~GD~a~ 71 (607)
T 1f7u_A 5 ANMISQLKKLSIAEP--AV-A-------KDSHPDVNIVDLMRNYISQELSKISGVDSSLIFPALEWTNTM---ERGDLLI 71 (607)
T ss_dssp HHHHHHHHHCCCSCH--HH-H-------TTCCTTTCHHHHHHHHHHHHHHHHHCCCHHHHGGGCEECSSG---GGCSEEE
T ss_pred HHHHHHHHhCCCCCC--CC-C-------CCCCccccHHHHHHHHHHHHHHHHhCCCccccccceeCCCCC---CCCchhh
Confidence 456666777776441 11 1 1112235889999999999999886421 0123358889999 9999999
Q ss_pred chHHHHHHHhhccCCCCCHHHHHHHHHHhhcccccCCcccccceeeEEEeCCeEEEEEeCHHHHHH-HHHHHHHcCCCCC
Q psy6783 250 NDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGE-QIKDIIVNGVQPP 328 (1119)
Q Consensus 250 n~Am~lAK~~k~~~~~~~P~~IA~~i~~~l~~~l~~~~~~~~~ie~vevagpGFINf~L~~~~~~~-~l~~il~~g~~~~ 328 (1119)
|++| +|.+| +||++||++|++. |+.+ +.|++++++|| ||||+|+++++.+ ++..++..|..|+
T Consensus 72 ~~~~--~k~~~-----~~P~~iA~~i~~~----l~~~----~~i~~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G 135 (607)
T 1f7u_A 72 PIPR--LRIKG-----ANPKDLAVQWAEK----FPCG----DFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYG 135 (607)
T ss_dssp EGGG--GCCTT-----CCHHHHHHHHHHT----CCCT----TTEEEEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHH--HHhcC-----CCHHHHHHHHHHh----cccc----CceeEEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcC
Confidence 9776 36664 8999999999999 7554 67999999996 9999999999986 6677778877776
Q ss_pred C--CCCCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCC-CCC
Q psy6783 329 T--LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL-TKS 405 (1119)
Q Consensus 329 ~--~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~-~~~ 405 (1119)
. .+++++|+||||||||||||||||+||+||||+|+|+|+++||+|+++|||||||+|||+|+.++ .++++.. ...
T Consensus 136 ~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~-~~~g~~~~~~~ 214 (607)
T 1f7u_A 136 SCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGF-ERYGNEEALVK 214 (607)
T ss_dssp CCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-HHHCCHHHHHH
T ss_pred CCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHH-HHhCchhhccC
Confidence 3 46788999999999999999999999999999999999999999999999999999999999985 5555321 122
Q ss_pred CChHHHHHHHHHhcccCCCc-------HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec-cch
Q psy6783 406 PPIADLQAFYKESKKRFDED-------EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGE 477 (1119)
Q Consensus 406 ~~i~~l~~~y~~~~~~~~~d-------e~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~-~ge 477 (1119)
.++.++.++|+++++.++++ +.+.++|++.+.+||+||+++.++|++++++++++|+++|++|||+|+. .||
T Consensus 215 ~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~E 294 (607)
T 1f7u_A 215 DPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGE 294 (607)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEG
T ss_pred CChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCc
Confidence 46888999999999988877 8899999999999999999999999999999999999999999999964 689
Q ss_pred hhhh-HHHHHHHHHHHHCCCeEeeCCCeEEEcCCC--CCCCeEEEecCCCcccchhhHHHHHHHhhhhCCCEEEEEeecC
Q psy6783 478 SFYQ-KHMEQLVPYLEKKGLLELDDGRKIMWGEDR--GSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLG 554 (1119)
Q Consensus 478 S~y~-~~v~~vi~~L~~kG~~~e~dGA~~~~~ddk--d~~~~VL~KSDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~ 554 (1119)
|.|. +.++++++.|+++|++|++|||+|++.++. +..|+|++||||++||+|+|||||+||++++++|++|||||++
T Consensus 295 S~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~g~~~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~ 374 (607)
T 1f7u_A 295 SQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQ 374 (607)
T ss_dssp GGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGG
T ss_pred chhhhhHHHHHHHHHHhCCCEEEECCcEEEEecccCCCCCceeEeccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcCh
Confidence 9997 799999999999999999999999987643 3346899999999999999999999999889999999999999
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCcc
Q psy6783 555 QGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDED 634 (1119)
Q Consensus 555 Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d 634 (1119)
|++||.|
T Consensus 375 q~~~f~q------------------------------------------------------------------------- 381 (607)
T 1f7u_A 375 QDLHAAQ------------------------------------------------------------------------- 381 (607)
T ss_dssp GHHHHHH-------------------------------------------------------------------------
T ss_pred HhhHHHH-------------------------------------------------------------------------
Confidence 9999987
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccccccchhhhhHHHHHHHHHhcCCeeeecCceE
Q psy6783 635 EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGI 714 (1119)
Q Consensus 635 ~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~ 714 (1119)
T Consensus 382 -------------------------------------------------------------------------------- 381 (607)
T 1f7u_A 382 -------------------------------------------------------------------------------- 381 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHHHHHHHHHHhccCCC
Q psy6783 715 VYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHT 794 (1119)
Q Consensus 715 v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~~~~~~~l~~~~~~~ 794 (1119)
++++++.+|+. +...+.|++||+|. +||||.|++|+|+|+|+++..+|...+. ++.
T Consensus 382 --------------~~~~~~~lG~~--~~~~~~Hv~fg~v~-----kMSkR~G~~v~L~dLlde~~~~a~~~~~-~~~-- 437 (607)
T 1f7u_A 382 --------------FFEILKQMGFE--WAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMK-KNE-- 437 (607)
T ss_dssp --------------HHHHHHHTTCG--GGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHH-TCH--
T ss_pred --------------HHHHHHHcCCC--cCcEEEEecccccc-----cccCCCCCcccHHHHHHHHHHHHHHHHH-hCc--
Confidence 34455566762 33469999999996 4999999999999999998776644332 100
Q ss_pred CCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCCCCCCCCCCCCCCcc
Q psy6783 795 ELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSE 874 (1119)
Q Consensus 795 ~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~~~~~~~~~~~~~~~ 874 (1119)
+. |
T Consensus 438 ----~~---------------------------------------------~---------------------------- 440 (607)
T 1f7u_A 438 ----NK---------------------------------------------Y---------------------------- 440 (607)
T ss_dssp ----HH---------------------------------------------H----------------------------
T ss_pred ----cc---------------------------------------------c----------------------------
Confidence 00 0
Q ss_pred cccccCCCCCcCCCCCCCchhHHHHHHhhhccccccccccccCccchhhhhhcchhhhhhHHhhhcccCCCCChhhhHHH
Q psy6783 875 VEDRCCPSHAKTHRKPPFTYTELIEQALKENGLCWVWRGVGRGQEEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEA 954 (1119)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~~~~ 954 (1119)
.+.+|..++
T Consensus 441 -----------------------------------------------------------------------~~~~e~~~~ 449 (607)
T 1f7u_A 441 -----------------------------------------------------------------------AQIEHPEEV 449 (607)
T ss_dssp -----------------------------------------------------------------------TTCSCHHHH
T ss_pred -----------------------------------------------------------------------cchhhHHHH
Confidence 001345678
Q ss_pred HHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHh-CCCcchhhhhccCCCCCCCCHHHHH
Q psy6783 955 QQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTA-GINSEDLRVAAQSTPVSLEHEKEFA 1033 (1119)
Q Consensus 955 ~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa-~~~~~~l~~~~~~~~~~L~~~~E~~ 1033 (1119)
+++||+|||+|+||++++.++|+|||++|++++|||||||||||||||||+||+ +.....+ ...+...|++++|++
T Consensus 450 a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~~~~---~~~~~~~l~~~~e~~ 526 (607)
T 1f7u_A 450 ADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKW---INADFSLLKEPAAKL 526 (607)
T ss_dssp HHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCHHHH---TTSCGGGCCSHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcCCCcccc---cccchhhcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 4321111 112234577999999
Q ss_pred HHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccccccCCccchhhhHhHHHHHHHHHHHHHHHHhhhcCC
Q psy6783 1034 LAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNI 1113 (1119)
Q Consensus 1034 Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~VL~~~~~~~~~~~~~aRL~L~~at~~VL~~gL~LLGI 1113 (1119)
|++.|++||++|+.|+++++||+||+||++||++||+||++|||++++ .+++.+||+||.+|++||++||.||||
T Consensus 527 L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~~~Vl~~~-----~~~~~aRL~L~~a~~~vL~~gL~LLGI 601 (607)
T 1f7u_A 527 LIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQT-----EELATARLALYGAARQVLYNGMRLLGL 601 (607)
T ss_dssp HHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCSTTSC-----HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999754 257889999999999999999999999
Q ss_pred CcCcCC
Q psy6783 1114 RTVHKM 1119 (1119)
Q Consensus 1114 ~~~erM 1119 (1119)
+|||||
T Consensus 602 ~~perM 607 (607)
T 1f7u_A 602 TPVERM 607 (607)
T ss_dssp CCCSCC
T ss_pred CccccC
Confidence 999999
No 2
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=2.8e-104 Score=966.68 Aligned_cols=568 Identities=23% Similarity=0.343 Sum_probs=483.8
Q ss_pred cccHHHHHHHHHHHHHHHhcCcCCCCcceEeecCcccccCCccchhchHHHHHHHhhccCCCCCHHHHHHHHHHhhcccc
Q psy6783 204 RMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSEL 283 (1119)
Q Consensus 204 ~m~i~~~l~~~i~~al~~~~~~~~~~~~~ve~p~~~~~~~~GD~atn~Am~lAK~~k~~~~~~~P~~IA~~i~~~l~~~l 283 (1119)
.|++.+.|.+.|.+++....... ...+.|+.|+++ +|||||||+||.|||.+| ++|++||++|++. |
T Consensus 2 ~~~~~~~i~~~~~~a~~~~~~~~-~~~~~v~~~~~~---~~GD~~~n~a~~lak~~~-----~~P~~iA~~i~~~----l 68 (629)
T 2zue_A 2 LMEIRESVKERIEEIIKEIAPQW-EGEIELKETPDP---KLGDFGTPIAFKLAKLLK-----RPPIEIAEKIVEK----L 68 (629)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTC-CCCCCCEECSSG---GGCSEEECHHHHHHHHHT-----SCHHHHHHHHHHH----H
T ss_pred cHHHHHHHHHHHHHHHHhcCccc-cccceeeCCCCC---CCCceeHHHHHHHHHHcC-----CCHHHHHHHHHHH----h
Confidence 35788889899999988764322 234568899999 999999999999999997 9999999999999 6
Q ss_pred cC--CcccccceeeEEEeCCeEEEEEeCHH-HHHHHHHHHHHcCCCCCC--CCCCcEEEEEeeCCCCCCCccccccchhc
Q psy6783 284 AT--NPSLAKVIDKIEVAKPGFVNVFLSRV-YAGEQIKDIIVNGVQPPT--LNKKLRVLVDFSSPNIAKEMHVGHLRSTI 358 (1119)
Q Consensus 284 ~~--~~~~~~~ie~vevagpGFINf~L~~~-~~~~~l~~il~~g~~~~~--~~~~kkV~VEfsSpNptkpLHVGHlRsai 358 (1119)
+. + +.|++|+|+| |||||+|++. ++..++..++..|..|+. .+++++|+||||||||||||||||+||+|
T Consensus 69 ~~~~~----~~i~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~i 143 (629)
T 2zue_A 69 KLNLP----EGIKDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAI 143 (629)
T ss_dssp TTSCC----TTEEEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHH
T ss_pred hhccC----CCeEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHH
Confidence 53 3 6799999999 9999999999 566777888888887763 46789999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCC----------CCCCCh-HHHHHHHHHhcccCCCcHH
Q psy6783 359 IGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL----------TKSPPI-ADLQAFYKESKKRFDEDEI 427 (1119)
Q Consensus 359 iGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~----------~~~~~i-~~l~~~y~~~~~~~~~de~ 427 (1119)
|||+|||+|+++||+|+++|||||||+|||+|+.++....++.. .+.+++ .++.++|+++++.++.+++
T Consensus 144 igD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~ 223 (629)
T 2zue_A 144 LGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPE 223 (629)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCch
Confidence 99999999999999999999999999999999988764211110 023455 5689999999988888899
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec-cchhhh--hHHHHHHHHHHHHCCCeE-----e
Q psy6783 428 FKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFY--QKHMEQLVPYLEKKGLLE-----L 499 (1119)
Q Consensus 428 ~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~-~geS~y--~~~v~~vi~~L~~kG~~~-----e 499 (1119)
|++++++.+.++|+|| .+|+.+++++.++|+++|++|||+|+. .+||.| .+.+++++++|+++|++| +
T Consensus 224 ~~~~~~~~~~~~e~gd----~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge 299 (629)
T 2zue_A 224 LENEIRDIMKKLESGE----LYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGK 299 (629)
T ss_dssp GHHHHHHHHHHHHHSS----SCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSST
T ss_pred HHHHHHHHHHhccccc----HHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccchhHHHHHHHHHHCCCccccccCC
Confidence 9999999999999998 799999999999999999999999975 589988 689999999999999999 8
Q ss_pred eCCCeEEEcCCC----CCCCeEEEecCCCcccchhhHHHHHHH---------hhhh-------------------CCCEE
Q psy6783 500 DDGRKIMWGEDR----GSIPMTIVKSDGGFTYDTSDLAAIRQR---------IEEE-------------------KADWI 547 (1119)
Q Consensus 500 ~dGA~~~~~ddk----d~~~~VL~KSDGt~tY~t~DIAy~~~R---------~~~~-------------------~~d~i 547 (1119)
+||++|++.++. +..++|++||||++||+|+|||||+|| .+.+ ++|++
T Consensus 300 ~~Ga~~v~~~~~g~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~ 379 (629)
T 2zue_A 300 YRGAFVMDLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIV 379 (629)
T ss_dssp TTTCEEEECTTTCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEE
T ss_pred cCCcEEEECcccCCccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcE
Confidence 999999887643 222389999999999999999999994 6554 89999
Q ss_pred EEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHH
Q psy6783 548 VYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKES 627 (1119)
Q Consensus 548 IyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~ 627 (1119)
|||||++|+.||.++
T Consensus 380 IyV~g~~q~~~~~~l----------------------------------------------------------------- 394 (629)
T 2zue_A 380 INVIGAEQKHPQLAI----------------------------------------------------------------- 394 (629)
T ss_dssp EEEEEGGGHHHHHHH-----------------------------------------------------------------
T ss_pred EEEEeCcHhhHHHHH-----------------------------------------------------------------
Confidence 999999999888873
Q ss_pred hhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccccccchhhhhHHHHHHHHHhcCCee
Q psy6783 628 KKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLS 707 (1119)
Q Consensus 628 ~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~gES~y~~~~~~vi~~l~~~g~~~ 707 (1119)
T Consensus 395 -------------------------------------------------------------------------------- 394 (629)
T 2zue_A 395 -------------------------------------------------------------------------------- 394 (629)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccC--CeeeHHHHHHHHHHHHHH
Q psy6783 708 LTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSG--DTVKLSELLDEGLRRSLD 785 (1119)
Q Consensus 708 ~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G--~~v~l~~ll~~~~~~~~~ 785 (1119)
+++++.+|+.. ...++.|+.||+|..+ ++|||||.| ++|.++|+|+++.++|.+
T Consensus 395 ----------------------~~~l~~lG~~~-~~~~~~h~~~g~V~~~-~~KMSkr~G~~n~v~l~dLl~e~~~~a~~ 450 (629)
T 2zue_A 395 ----------------------KYALQLLGFED-AAANLYHLAYEHVERP-EGKFSGRKGTWVGFTVDEVIQEAVKRARE 450 (629)
T ss_dssp ----------------------HHHHHHTTCHH-HHHTEEEEEECCEEBT-TBCCCTTTTTTTTCBHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHcCCCC-CCCeEEEEEeeeEEcC-CCcccCCCCCCCeeeHHHHHHHHHHHHHH
Confidence 33444455411 0236899999999975 468999999 999999999999988877
Q ss_pred HHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCCCCCCC
Q psy6783 786 KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDP 865 (1119)
Q Consensus 786 ~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~~~~~~ 865 (1119)
.+.+++.
T Consensus 451 ~~~~~~~------------------------------------------------------------------------- 457 (629)
T 2zue_A 451 LIEEKNP------------------------------------------------------------------------- 457 (629)
T ss_dssp HHHHHCT-------------------------------------------------------------------------
T ss_pred HHHhcCc-------------------------------------------------------------------------
Confidence 7654321
Q ss_pred CCCCCCCcccccccCCCCCcCCCCCCCchhHHHHHHhhhccccccccccccCccchhhhhhcchhhhhhHHhhhcccCCC
Q psy6783 866 PEPDPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLCWVWRGVGRGQEEVQDSLRGYGLRRSLDKLKDKNRHTE 945 (1119)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 945 (1119)
+
T Consensus 458 -------------------------------------------------------------------------------~ 458 (629)
T 2zue_A 458 -------------------------------------------------------------------------------A 458 (629)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------c
Confidence 2
Q ss_pred CChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchh--hhhccCCC
Q psy6783 946 LTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDL--RVAAQSTP 1023 (1119)
Q Consensus 946 ~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l--~~~~~~~~ 1023 (1119)
+++++.+++|+.+|++||+|++|+.++.++++|||++|++++|||+|||||||||||||+||++.....+ +.......
T Consensus 459 ~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~ 538 (629)
T 2zue_A 459 LSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNAD 538 (629)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCC
T ss_pred cchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 4556778899999999999999999999999999999999999999999999999999999985432100 00000112
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccccccCCccchhhhHhHHHHHHHHHHHH
Q psy6783 1024 VSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKV 1103 (1119)
Q Consensus 1024 ~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~VL~~~~~~~~~~~~~aRL~L~~at~~V 1103 (1119)
..+.++.|++|++.|.+||++|+.|+++++||++|+||++||+.||+||+.||||.++. +++.+||+||.+|++|
T Consensus 539 ~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~~fn~fy~~~~vl~~~~-----~~~~~RL~L~~a~~~v 613 (629)
T 2zue_A 539 FTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDHPVLKAEE-----GVREARLLLVMAVEQV 613 (629)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHCCSTTSCT-----THHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCCh-----HHHHHHHHHHHHHHHH
Confidence 24678999999999999999999999999999999999999999999999999997532 4688999999999999
Q ss_pred HHHHhhhcCCCcCcCC
Q psy6783 1104 MKKCFDILNIRTVHKM 1119 (1119)
Q Consensus 1104 L~~gL~LLGI~~~erM 1119 (1119)
|++||.||||+|||||
T Consensus 614 L~~gL~lLGI~ape~M 629 (629)
T 2zue_A 614 LKNALYLMGIEAPERM 629 (629)
T ss_dssp HHHHHHHTTCCCCSCC
T ss_pred HHHHHHHcCCCccccC
Confidence 9999999999999999
No 3
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=2e-94 Score=876.85 Aligned_cols=543 Identities=24% Similarity=0.287 Sum_probs=453.5
Q ss_pred HHHHHHHHHHHHHHHhcCcCCCCcceEeecCcccccCCccchhchHHHHHHHhhccCCCCCHHHHHHHHHHhhcccccCC
Q psy6783 207 VRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATN 286 (1119)
Q Consensus 207 i~~~l~~~i~~al~~~~~~~~~~~~~ve~p~~~~~~~~GD~atn~Am~lAK~~k~~~~~~~P~~IA~~i~~~l~~~l~~~ 286 (1119)
+.+.|.+.|.+++.+... . ..+.|+.|+++ +|||||||+ |.|||.+| ++|++||++|++. |+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~~---~~gD~~~~~-~~lak~~~-----~~P~~iA~~i~~~----l~~~ 65 (592)
T 1iq0_A 2 LRRALEEAIAQALKEMGV--P-VRLKVARAPKD---KPGDYGVPL-FALAKELR-----KPPQAIAQELKDR----LPLP 65 (592)
T ss_dssp CHHHHHHHHHHHHHTTSC--C-CCCCCEECSTT---SSCSEEEEC-SHHHHHTT-----SCHHHHHHHHHHT----CCCC
T ss_pred hHHHHHHHHHHHHHhcCC--C-ccceeeCCCCC---CCCcchhhH-HHHHHHcC-----CCHHHHHHHHHHh----cccc
Confidence 345677777777776422 1 34568899999 999999995 99999997 9999999999999 6544
Q ss_pred cccccceeeEEEeCCeEEEEEeCHHHH-HHHHHHHHHcCCCCCCCCCCcEEEEEeeCCCCCCCccccccchhcHHHHHHH
Q psy6783 287 PSLAKVIDKIEVAKPGFVNVFLSRVYA-GEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISR 365 (1119)
Q Consensus 287 ~~~~~~ie~vevagpGFINf~L~~~~~-~~~l~~il~~g~~~~~~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLar 365 (1119)
+.|++|+++| |||||+|++.++ ..++..++..|..|+ +|+||||||||+|||||||+||+||||+|||
T Consensus 66 ----~~~~~~~~~g-gfiN~~l~~~~~~~~~~~~~~~~~~~~g------~v~ve~~spn~~~~~HiGH~R~~iigD~laR 134 (592)
T 1iq0_A 66 ----EFVEEAVPVG-GYLNFRLRTEALLREALRPKAPFPRRPG------VVLVEHTSVNPNKELHVGHLRNIALGDAIAR 134 (592)
T ss_dssp ----TTEEEEEEET-TEEEEEECHHHHHHHHHSCCCCCCCEEE------EEEEECCCCCTTSCCBHHHHHHHHHHHHHHH
T ss_pred ----CcEEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcCcccC------eEEEEeeCCCCCCCCcchHHHHHHHHHHHHH
Confidence 6799999999 999999999954 455544444555553 8999999999999999999999999999999
Q ss_pred HHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChh
Q psy6783 366 LLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPD 445 (1119)
Q Consensus 366 il~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e 445 (1119)
+|+++||+|.++|||||||+||++++.++.+..++.....++..++.++|+++++.++++ +|.+++++.+.++|+|+
T Consensus 135 ~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~-~~~~~a~~~~~~~e~g~-- 211 (592)
T 1iq0_A 135 ILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYE-RLQPAIEEVLHALERGE-- 211 (592)
T ss_dssp HHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHCTTTG-GGHHHHHHHHHHHHTTT--
T ss_pred HHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHhCCchH--
Confidence 999999999999999999999999998876532222111245677899999999988887 89999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcEEec-cchhhh--hHHHHHHHHHHHHCCCeE-----eeCCCeEEEcCCC----CC
Q psy6783 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFY--QKHMEQLVPYLEKKGLLE-----LDDGRKIMWGEDR----GS 513 (1119)
Q Consensus 446 ~~~lW~~~~~~s~~~~~~~y~~l~i~f~~-~geS~y--~~~v~~vi~~L~~kG~~~-----e~dGA~~~~~ddk----d~ 513 (1119)
. +.+++.+.++|+++|++|||+||. .+||.+ .+.++++++.|+++|++| +++|++|++.++. +.
T Consensus 212 ~----~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~~~l 287 (592)
T 1iq0_A 212 L----REEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLED 287 (592)
T ss_dssp T----HHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSC
T ss_pred H----HHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechhcCCCCCC
Confidence 1 889999999999999999999974 578988 689999999999999999 8899999876543 22
Q ss_pred CCeEEEecCCCcccchhhHHHHHHH--------hhhh--------------------CCCEEEEEeecCcccchhhhhhh
Q psy6783 514 IPMTIVKSDGGFTYDTSDLAAIRQR--------IEEE--------------------KADWIVYVTDLGQGVHFRLLEES 565 (1119)
Q Consensus 514 ~~~VL~KSDGt~tY~t~DIAy~~~R--------~~~~--------------------~~d~iIyVv~~~Q~~H~~~~~RS 565 (1119)
.++|++||||++||+++|+|||+|| .+.+ ++|++|||||.+|..|+.++
T Consensus 288 ~~~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~--- 364 (592)
T 1iq0_A 288 PFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALV--- 364 (592)
T ss_dssp CEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHH---
T ss_pred CceEEEecCCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHH---
Confidence 2389999999999999999999994 5544 89999999999999988873
Q ss_pred hhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccHHHHHHHHHHH
Q psy6783 566 TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 645 (1119)
Q Consensus 566 tIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~~~~~~a~~~~ 645 (1119)
.+++
T Consensus 365 -------~~~~--------------------------------------------------------------------- 368 (592)
T 1iq0_A 365 -------RAAL--------------------------------------------------------------------- 368 (592)
T ss_dssp -------HHHH---------------------------------------------------------------------
T ss_pred -------HHHH---------------------------------------------------------------------
Confidence 2222
Q ss_pred HHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccccccchhhhhHHHHHHHHHhcCCeeeecCceEEEEecCCcchh
Q psy6783 646 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVH 725 (1119)
Q Consensus 646 ~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~v~v~d~~~~~h 725 (1119)
T Consensus 369 -------------------------------------------------------------------------------- 368 (592)
T 1iq0_A 369 -------------------------------------------------------------------------------- 368 (592)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHHHHHHHHHHhccCCCCCChhhhHHHH
Q psy6783 726 FRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQ 805 (1119)
Q Consensus 726 ~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 805 (1119)
+.+|+.. ...++.|++||+|+. +|+|||||.|++|.+.++|+++.+++.+.+.+++.
T Consensus 369 --------~alG~~~-~~~~~~H~~~g~v~~-~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~------------- 425 (592)
T 1iq0_A 369 --------ALAGYPA-LAEKAHHLAYETVLL-EGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNP------------- 425 (592)
T ss_dssp --------HHTTCHH-HHTTEEEEEECCEEE-TTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCT-------------
T ss_pred --------HHcCCCC-CCCcEEEEEeeEEEc-CCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCC-------------
Confidence 3334311 023689999999987 46789999999999999999998887766654321
Q ss_pred HHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCCCCCCCCCCCCCCcccccccCCCCCc
Q psy6783 806 QAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDPPEPDPSQSEVEDRCCPSHAK 885 (1119)
Q Consensus 806 ~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (1119)
T Consensus 426 -------------------------------------------------------------------------------- 425 (592)
T 1iq0_A 426 -------------------------------------------------------------------------------- 425 (592)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCchhHHHHHHhhhccccccccccccCccchhhhhhcchhhhhhHHhhhcccCCCCChhhhHHHHHHHhhhhhhh
Q psy6783 886 THRKPPFTYTELIEQALKENGLCWVWRGVGRGQEEVQDSLRGYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKY 965 (1119)
Q Consensus 886 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~v~~~ai~~ 965 (1119)
+++++| ++++.+|++|++|
T Consensus 426 -----------------------------------------------------------~~~~~e--~~a~~vg~~aiRy 444 (592)
T 1iq0_A 426 -----------------------------------------------------------DHPDKE--EAARMVALGAIRF 444 (592)
T ss_dssp -----------------------------------------------------------TCSCHH--HHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------CCCcHH--HHHHhhcHHHHHH
Confidence 122223 6888999999999
Q ss_pred hhcccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHH
Q psy6783 966 ADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVL 1045 (1119)
Q Consensus 966 ~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl 1045 (1119)
++|++.+.++++|||++++++++||++|+||+|||||||+||++.... . ...+.++.|++|++.|.+||+++
T Consensus 445 f~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~-------~-~~~l~~~~e~~L~~~l~~~~~~v 516 (592)
T 1iq0_A 445 SMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGA-------P-DLSQATPYERALALDLLDFEEAV 516 (592)
T ss_dssp HHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCC-------C-CGGGCCHHHHHHHHHHTTHHHHH
T ss_pred HHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCC-------C-ccCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999964321 0 12356899999999999999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHhhhhcc-------cccccCCccchhhhHhHHHHHHHHHHHHHHHHhhhcCCCcCcC
Q psy6783 1046 MLVTRDLCLHHLCEYLYDISTAFSEFYDNC-------YCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTVHK 1118 (1119)
Q Consensus 1046 ~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~-------~VL~~~~~~~~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~er 1118 (1119)
+.|+++++||++|+||++||+.||+||+.| |||.++. +++.+||+||.+|++||++||.||||+||||
T Consensus 517 ~~a~~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~~~-----~~~~~RL~L~~a~~~vl~~~l~lLGi~~~e~ 591 (592)
T 1iq0_A 517 LEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPE-----GLRELRLSLVQSLQRTLATGLDLLGIPAPEV 591 (592)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTSCT-----THHHHHHHHHHHHHHHHHHHHHHTTCCCCSC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCCCH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 999999999999999999999999999999 9997532 4688999999999999999999999999999
Q ss_pred C
Q psy6783 1119 M 1119 (1119)
Q Consensus 1119 M 1119 (1119)
|
T Consensus 592 M 592 (592)
T 1iq0_A 592 M 592 (592)
T ss_dssp C
T ss_pred C
Confidence 9
No 4
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=2e-86 Score=781.35 Aligned_cols=434 Identities=20% Similarity=0.293 Sum_probs=362.7
Q ss_pred EEeCHHHHHHHHHHHHHcCCCCCCC-CCCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCch
Q psy6783 306 VFLSRVYAGEQIKDIIVNGVQPPTL-NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG 384 (1119)
Q Consensus 306 f~L~~~~~~~~l~~il~~g~~~~~~-~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G 384 (1119)
|+|+++|+..++.+|+..|..|+.. .++++|+||||||||||||||||+||++|||+|||+++++||+|.|+|||||||
T Consensus 1 ~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCCCCSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred CEECHHHHHHHHHHHHHhHHhcCCCCCCCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 6899999999999999988888642 268999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhc-----------CCCCCCCCChHHHHH-HHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHH
Q psy6783 385 TQFGMLIAHLQDKF-----------PDYLTKSPPIADLQA-FYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEM 452 (1119)
Q Consensus 385 ~Qi~~L~~~~~~r~-----------~e~~~~~~~i~~l~~-~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~ 452 (1119)
+|||+|+.+++.+| |+..+.++++.++++ ++.+....+. +|++...+|++
T Consensus 81 ~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~~~~ 142 (464)
T 3fnr_A 81 NQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFF------------------SEENIPSLADW 142 (464)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGC------------------SGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhc------------------CcHHHHHHHHH
Confidence 99999999886553 444555555666643 3333222221 25556789999
Q ss_pred HHHHHHHHHHHHHhhcCcEEec-cch-hhhhHHHHHHHHHHHHCCCeEeeCCCeEEEcCCC-CCCCeEEEecCCCcccch
Q psy6783 453 ICDVSRRDFQKIYDRLNVTLTE-RGE-SFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDR-GSIPMTIVKSDGGFTYDT 529 (1119)
Q Consensus 453 ~~~~s~~~~~~~y~~l~i~f~~-~ge-S~y~~~v~~vi~~L~~kG~~~e~dGA~~~~~ddk-d~~~~VL~KSDGt~tY~t 529 (1119)
++++++++++++|.+|||+||. .|| |+|+ .+++++++|+++|++|++|||+|++.++. +..|+||+|||||+||+|
T Consensus 143 ~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~-~~~~vv~~L~~~g~~~e~dGa~~~~~~~~g~~~~~vl~ksDG~~~Y~t 221 (464)
T 3fnr_A 143 AKDKMLVLIKQNLEQAKIKIDSYVSERSYYD-ALNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVIIREDGRGTYLA 221 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCEEEGGGGST-THHHHHHHHHHTTCEEEETTEEEECGGGGTCSSCEEEECTTSCBCHHH
T ss_pred HHHHHHHHHHHHHHHhCCCceeecCHHHHHH-HHHHHHHHHHHCCCEEEeCCeEEEEecccCCCCceEEEeCCCceehhh
Confidence 9999999999999999999985 677 6777 99999999999999999999999977543 224689999999999999
Q ss_pred hhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCC
Q psy6783 530 SDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPD 609 (1119)
Q Consensus 530 ~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~ 609 (1119)
+|||||.+|+++ +||++|||||++|..|+.+
T Consensus 222 ~DiA~~~~r~~~-~~d~~Iyv~G~dq~~~f~~------------------------------------------------ 252 (464)
T 3fnr_A 222 ADIVYHKDKMSR-GYGKCINIWGADHHGYIPR------------------------------------------------ 252 (464)
T ss_dssp HHHHHHHHHHTS-SCSEEEEEEEGGGGGGHHH------------------------------------------------
T ss_pred HHHHHHHHHHHc-CCCeEEEEecCcHHHHHHH------------------------------------------------
Confidence 999999999965 8999999999999988776
Q ss_pred CCCCCCchhhHHHHHHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccccccchh
Q psy6783 610 YLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFY 689 (1119)
Q Consensus 610 ~~~~~~~i~~L~~~Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~~gES~y 689 (1119)
T Consensus 253 -------------------------------------------------------------------------------- 252 (464)
T 3fnr_A 253 -------------------------------------------------------------------------------- 252 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHhcCCeeeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEE-ECCCCc--cccccc
Q psy6783 690 QKHMEQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVV-LGEDRK--KFKTRS 766 (1119)
Q Consensus 690 ~~~~~~vi~~l~~~g~~~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V-~~~~~~--~~str~ 766 (1119)
++++++.+|+. | .++.|+.||+| +.++|+ |||||.
T Consensus 253 ---------------------------------------l~~~l~~lG~~-~--~~~~h~~~g~V~l~~dG~~~KMSKr~ 290 (464)
T 3fnr_A 253 ---------------------------------------MKAAMEFLGFD-S--NNLEIILAQMVSLLKDGEPYKMSKRA 290 (464)
T ss_dssp ---------------------------------------HHHHHHTTTCC-G--GGEEEEEECCEEEEETTEECCC---C
T ss_pred ---------------------------------------HHHHHHHcCCC-c--cceEEEEeeeEEecCCCcccCCcCcC
Confidence 44555667763 3 38899999999 667774 999999
Q ss_pred CCeeeHHHHHHHHHHHHHHHHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHH
Q psy6783 767 GDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLY 846 (1119)
Q Consensus 767 G~~v~l~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y 846 (1119)
|++|.+.++|++
T Consensus 291 Gn~v~l~dll~~-------------------------------------------------------------------- 302 (464)
T 3fnr_A 291 GNFILMSDVVDE-------------------------------------------------------------------- 302 (464)
T ss_dssp CSSCBHHHHHHH--------------------------------------------------------------------
T ss_pred CCCCCHHHHHhh--------------------------------------------------------------------
Confidence 999999877631
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCcccccccCCCCCcCCCCCCCchhHHHHHHhhhccccccccccccCccchhhhhh
Q psy6783 847 AYTRIASIARTAGINSEDPPEPDPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKENGLCWVWRGVGRGQEEVQDSLR 926 (1119)
Q Consensus 847 ~~~rl~si~rk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1119)
T Consensus 303 -------------------------------------------------------------------------------- 302 (464)
T 3fnr_A 303 -------------------------------------------------------------------------------- 302 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhhHHhhhcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhcccc-CCchhHHHHHHHHHHHHH
Q psy6783 927 GYGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDR-GNTAVYLLYAYTRIASIA 1005 (1119)
Q Consensus 927 ~~~~~~~~~~~~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~-gnt~~YlQYahARi~SIl 1005 (1119)
+|..|++|.+|++++.++++|||++++++. +||++|+||||||||||+
T Consensus 303 -------------------------------~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~sil 351 (464)
T 3fnr_A 303 -------------------------------IGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVF 351 (464)
T ss_dssp -------------------------------HCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHH
T ss_pred -------------------------------ccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 234578888999999999999999999875 677889999999999999
Q ss_pred HHhCCCcchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccccccCCccc
Q psy6783 1006 RTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGK 1085 (1119)
Q Consensus 1006 rKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~VL~~~~~~~ 1085 (1119)
||++......+ ..+...|+++ |+.|+..|.+||++|..|+++++||++|+||++||+.||+||+.|||++++.
T Consensus 352 rk~~~~~~~~~---~~~~~~L~~~-e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl~~~~--- 424 (464)
T 3fnr_A 352 AKAGKKIDDVM---KADLQSLNQD-GVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSAN--- 424 (464)
T ss_dssp HHTTCCTTTST---TCCCTTCCHH-HHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCTTSTT---
T ss_pred HHhhccCCCcc---ccChhhCChH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCH---
Confidence 99964322111 1233456666 9999999999999999999999999999999999999999999999997542
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhhhcCCCcCcCC
Q psy6783 1086 IKTVHTGRLLLAEATAKVMKKCFDILNIRTVHKM 1119 (1119)
Q Consensus 1086 ~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~erM 1119 (1119)
+++.+||+||.|| ||++||.||||+|||+|
T Consensus 425 --~~~~aRL~L~~a~--vL~~gL~lLGi~ape~m 454 (464)
T 3fnr_A 425 --ENDLLKLFSLVAL--SIKTAFSLMGIEAKNKM 454 (464)
T ss_dssp --HHHHHHHHHHHHH--HHHHHHHHTTCCCCSCC
T ss_pred --HHHHHHHHHHHHH--HHHHHHHhcCCCchHHh
Confidence 5789999999999 99999999999999999
No 5
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=4.3e-34 Score=346.83 Aligned_cols=269 Identities=22% Similarity=0.331 Sum_probs=216.1
Q ss_pred EEEEEeec--CcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHH
Q psy6783 546 WIVYVTDL--GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 623 (1119)
Q Consensus 546 ~iIyVv~~--~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~ 623 (1119)
-+||+++. .-.+|+||+ |||||||+|+|+|+++||+|+++||+||||+|||+|++++.++++++.....|+.+|.++
T Consensus 145 V~ve~~spN~~~plHvGHl-Rs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~~~ 223 (607)
T 1f7u_A 145 VIIEFSSPNIAKPFHAGHL-RSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDV 223 (607)
T ss_dssp EEEECCCCBTTSCCBGGGH-HHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHHHH
T ss_pred EEEEecCCCCCCCCccchH-HHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHHHH
Confidence 34555542 235799998 999999999999999999999999999999999999999999887655555789999999
Q ss_pred HHHHhhhcCcc-------HHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc-cccchhh-hhHH
Q psy6783 624 YKESKKRFDED-------EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESFYQ-KHME 694 (1119)
Q Consensus 624 Y~~~~~~~~~d-------~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~-~gES~y~-~~~~ 694 (1119)
|+++++.+++| +.+.++|++++.+||+||++++++|++|+++|+++|+++|++|||+||. .|||+|+ +.++
T Consensus 224 Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~~~ 303 (607)
T 1f7u_A 224 YVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESML 303 (607)
T ss_dssp HHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhHHH
Confidence 99999999988 8999999999999999999999999999999999999999999999995 8999998 8999
Q ss_pred HHHHHHHhcCCeeeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHH
Q psy6783 695 QLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSE 774 (1119)
Q Consensus 695 ~vi~~l~~~g~~~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ 774 (1119)
++++.|+++|++++++|+.++++.+.++ ... ++|+ .++||++.|.+.
T Consensus 304 ~vi~~L~~kG~~ye~dGa~~~~~~~~g~----------------------~~d----~~v~-------~KsDG~~~Y~t~ 350 (607)
T 1f7u_A 304 KAIDLFKEKGLTHEDKGAVLIDLTKFNK----------------------KLG----KAIV-------QKSDGTTLYLTR 350 (607)
T ss_dssp HHHHHHHHTTCEEEETTEEEEEGGGTCT----------------------TTC----EEEE-------ECTTSCCCHHHH
T ss_pred HHHHHHHhCCCEEEECCcEEEEecccCC----------------------CCC----ceeE-------eccCCCcCCCCC
Confidence 9999999999999999998887543211 111 1232 347899999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHH
Q psy6783 775 LLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASI 854 (1119)
Q Consensus 775 ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si 854 (1119)
+|+.+.+|... +.++++++.-|+. ...||+|++.+
T Consensus 351 Dia~~~~k~~~------------------------------------------~~~d~~IyV~g~~---q~~~f~q~~~~ 385 (607)
T 1f7u_A 351 DVGAAMDRYEK------------------------------------------YHFDKMIYVIASQ---QDLHAAQFFEI 385 (607)
T ss_dssp HHHHHHHHHHH------------------------------------------HCCSEEEEECCGG---GHHHHHHHHHH
T ss_pred cHHHHHHHHhh------------------------------------------cCCCcEEEEEcCh---HhhHHHHHHHH
Confidence 88877764210 1234455544443 56789999999
Q ss_pred HHhhCCCCCCCCCCCCCCcccccccCCCCCcCCC-CC-CCchhHHHHHHh
Q psy6783 855 ARTAGINSEDPPEPDPSQSEVEDRCCPSHAKTHR-KP-PFTYTELIEQAL 902 (1119)
Q Consensus 855 ~rk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~a~ 902 (1119)
++.+|+++.. .+.|..||++.+-+. ++ .+++.||++++.
T Consensus 386 ~~~lG~~~~~---------~~~Hv~fg~v~kMSkR~G~~v~L~dLlde~~ 426 (607)
T 1f7u_A 386 LKQMGFEWAK---------DLQHVNFGMVQGMSTRKGTVVFLDNILEETK 426 (607)
T ss_dssp HHHTTCGGGG---------GEEEECCCCEESCCGGGTCCCBHHHHHHHHH
T ss_pred HHHcCCCcCc---------EEEEecccccccccCCCCCcccHHHHHHHHH
Confidence 9999985431 278999988774222 33 445667776654
No 6
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.95 E-value=3.1e-28 Score=297.38 Aligned_cols=153 Identities=22% Similarity=0.368 Sum_probs=133.8
Q ss_pred chHHHHHHHHHHHHHHhccccCCCCcceeecccCCCCCCccccchhHHHHhHhhhccCCCCCHHHHHHHHHHhhhhcccc
Q psy6783 10 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELAT 89 (1119)
Q Consensus 10 ~~~~~l~~~~~~a~~~~~~~l~~~~~~~~~e~~p~~~~~Gd~atn~A~~LAk~~~~~~~~~~P~~iA~~i~~~~~~~l~~ 89 (1119)
.+.+.|.+.|.+|+..+..+ .+..+.+++ |+++.|||||||+||+|||.+ |++|++||++|++ +|..
T Consensus 4 ~~~~~i~~~~~~a~~~~~~~---~~~~~~v~~-~~~~~~GD~~~n~a~~lak~~-----~~~P~~iA~~i~~----~l~~ 70 (629)
T 2zue_A 4 EIRESVKERIEEIIKEIAPQ---WEGEIELKE-TPDPKLGDFGTPIAFKLAKLL-----KRPPIEIAEKIVE----KLKL 70 (629)
T ss_dssp TTHHHHHHHHHHHHHHHCTT---CCCCCCCEE-CSSGGGCSEEECHHHHHHHHH-----TSCHHHHHHHHHH----HHTT
T ss_pred HHHHHHHHHHHHHHHhcCcc---ccccceeeC-CCCCCCCceeHHHHHHHHHHc-----CCCHHHHHHHHHH----Hhhh
Confidence 45677888888888775332 234567888 899999999999999999999 9999999999998 4753
Q ss_pred --CcccccchhhhcccCCceEEEEeCHH-HHHHHHHHHHHcCCCCCCC--CCCceEEEEeeCCCccccCCcccCCCCchh
Q psy6783 90 --NPSLAKVIDKIEAAKPGFVNVFLSRV-YAGEQMKDIIVNGVQPPTL--NKKLRVLVDFSSPNIARKGGFLYPHLPSQI 164 (1119)
Q Consensus 90 --~~~~~~~i~~veiagpGfiN~~l~~~-~~~~~~~~il~~g~~~g~~--~~~~~v~vE~vSANP~~~tg~l~~hig~~~ 164 (1119)
+ ++|++|||+| |||||+|++. ++..++..|+..|+.||.. +++++|+|||||||| +||+ ||| |+
T Consensus 71 ~~~----~~i~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~spN~---~~~~--HiG-H~ 139 (629)
T 2zue_A 71 NLP----EGIKDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNP---TKPL--HMG-HA 139 (629)
T ss_dssp SCC----TTEEEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCT---TSCC--BHH-HH
T ss_pred ccC----CCeEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeCCCC---CCCC--ccc-hh
Confidence 2 3599999999 9999999999 7888999999999999953 478899999999999 9999 999 99
Q ss_pred hHHHHHHHHHHHHHHcCCCCCc
Q psy6783 165 HDILISKAIAEEEKKQGISSSS 186 (1119)
Q Consensus 165 r~~~~gd~lar~~~~~G~~v~~ 186 (1119)
|++|+||+|||+|+++||+|..
T Consensus 140 Rs~iigD~laR~l~~~G~~V~~ 161 (629)
T 2zue_A 140 RNAILGDVMARILRFLGYEVEV 161 (629)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCceE
Confidence 9999999999999999999864
No 7
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.94 E-value=6.6e-27 Score=275.67 Aligned_cols=223 Identities=14% Similarity=0.128 Sum_probs=164.7
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhc-----CCCCCCCCchhhHHHHHHHHhhh
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF-----PDYLTKSPPIADLQAFYKESKKR 630 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~-----~~~~~~~~~i~~L~~~Y~~~~~~ 630 (1119)
.+|+||+ |||+|||+|+|++++.||+|+|.||+||||+|||+|+.++...+ ..+.. .|-+
T Consensus 44 ~~h~gh~-r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~--~p~~------------ 108 (464)
T 3fnr_A 44 PLHIGHA-RGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVE--YPEQ------------ 108 (464)
T ss_dssp SCBGGGH-HHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCC--CCSS------------
T ss_pred CCccchh-HHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCC--Cchh------------
Confidence 6899998 99999999999999999999999999999999999998874322 11110 0100
Q ss_pred cCccHHHHHHHHHHHHHhhc---CChhHHHHHHHHHHhhHHHHHHHHHHhcccccc-cccch-hhhhHHHHHHHHHhcCC
Q psy6783 631 FDEDEIFKKRAYQCVVALQR---FDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESF-YQKHMEQLVPYLEKKGN 705 (1119)
Q Consensus 631 ~~~d~~~~~~a~~~~~~le~---gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~-~gES~-y~~~~~~vi~~l~~~g~ 705 (1119)
.-.++.+.+.+++++.++.. .|++...+|++++++|+++++++|+||||+||. .|||+ |+ +++++++.|+++|+
T Consensus 109 ~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~-~~~~vv~~L~~~g~ 187 (464)
T 3fnr_A 109 YYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD-ALNATLESLKEHKG 187 (464)
T ss_dssp CCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGGGST-THHHHHHHHHHTTC
T ss_pred hcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHHHHH-HHHHHHHHHHHCCC
Confidence 01112233334444444332 378888999999999999999999999999995 89955 56 99999999999999
Q ss_pred eeeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHHHHHHH
Q psy6783 706 LSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLD 785 (1119)
Q Consensus 706 ~~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~~~~~~ 785 (1119)
+++++|+.|+++++.| . +++ +|+ .++||++.|++.+|.++.++.
T Consensus 188 ~~e~dGa~~~~~~~~g----------------~---~~~--------~vl-------~ksDG~~~Y~t~DiA~~~~r~-- 231 (464)
T 3fnr_A 188 IYEQEGKIWLASSQKG----------------D---EKD--------RVI-------IREDGRGTYLAADIVYHKDKM-- 231 (464)
T ss_dssp EEEETTEEEECGGGGT----------------C---SSC--------EEE-------ECTTSCBCHHHHHHHHHHHHH--
T ss_pred EEEeCCeEEEEecccC----------------C---CCc--------eEE-------EeCCCceehhhHHHHHHHHHH--
Confidence 9999999888754332 1 111 232 457999999999998887642
Q ss_pred HHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCCCCcccccccccccccCCchhhhHHHHHHHHHHHHhhCCCCCCC
Q psy6783 786 KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDP 865 (1119)
Q Consensus 786 ~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g~t~~yl~y~~~rl~si~rk~g~~~~~~ 865 (1119)
++ .+|++++..|.. ...||.|++.+++.+|++++
T Consensus 232 ---~~--------------------------------------~~d~~Iyv~G~d---q~~~f~~l~~~l~~lG~~~~-- 265 (464)
T 3fnr_A 232 ---SR--------------------------------------GYGKCINIWGAD---HHGYIPRMKAAMEFLGFDSN-- 265 (464)
T ss_dssp ---TS--------------------------------------SCSEEEEEEEGG---GGGGHHHHHHHHHTTTCCGG--
T ss_pred ---Hc--------------------------------------CCCeEEEEecCc---HHHHHHHHHHHHHHcCCCcc--
Confidence 10 124555555554 22589999999999998542
Q ss_pred CCCCCCCcccccccCCCCC
Q psy6783 866 PEPDPSQSEVEDRCCPSHA 884 (1119)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~ 884 (1119)
++.|.++|++.
T Consensus 266 --------~~~h~~~g~V~ 276 (464)
T 3fnr_A 266 --------NLEIILAQMVS 276 (464)
T ss_dssp --------GEEEEEECCEE
T ss_pred --------ceEEEEeeeEE
Confidence 36788899883
No 8
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.94 E-value=1.4e-25 Score=270.51 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=99.7
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
++++.|....|+||||+||||+|++++||+|+|+++..||+|..+++++|+|.++-..+... +
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~----------g------- 86 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE----------G------- 86 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH----------T-------
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc----------C-------
Confidence 46899999999999999999999999999999999999999999999999999886543211 0
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEecc---chhhhhHHHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVP 489 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~---geS~y~~~v~~vi~ 489 (1119)
-+ ++.+++.+.+.|.+.+.+|||.|+.. .+..|.+.++++++
T Consensus 87 -----------------------------~~------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~ 131 (536)
T 4dlp_A 87 -----------------------------IT------PRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQ 131 (536)
T ss_dssp -----------------------------SC------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHH
T ss_pred -----------------------------CC------HHHHHHHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHHHH
Confidence 00 22455667778999999999987642 23347789999999
Q ss_pred HHHHCCCeEeeCCCeE
Q psy6783 490 YLEKKGLLELDDGRKI 505 (1119)
Q Consensus 490 ~L~~kG~~~e~dGA~~ 505 (1119)
+|.++|++|+.+++.+
T Consensus 132 ~L~~~G~iY~~~~~~~ 147 (536)
T 4dlp_A 132 AMVANGDIYKGGYAGW 147 (536)
T ss_dssp HHHHTTCEEEEEEEEE
T ss_pred HHHHCCCEEEeceeee
Confidence 9999999999988765
No 9
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.92 E-value=9.8e-25 Score=264.36 Aligned_cols=123 Identities=16% Similarity=0.194 Sum_probs=100.2
Q ss_pred CCCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHH
Q psy6783 331 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 410 (1119)
Q Consensus 331 ~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~ 410 (1119)
++++++.|...+||||||+||||+|++++||+|+|+++..||+|..+++++|+|.++-..+... +.
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~----------g~---- 88 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQ----------GV---- 88 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHT----------TC----
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHc----------CC----
Confidence 3567899999999999999999999999999999999999999999999999999885543210 00
Q ss_pred HHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEecc---chhhhhHHHHHH
Q psy6783 411 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQL 487 (1119)
Q Consensus 411 l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~---geS~y~~~v~~v 487 (1119)
+ ++.+++.+.+.|++.+++|||+|+.+ .+..+.+.++++
T Consensus 89 --------------------------------~------p~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~ 130 (564)
T 3kfl_A 89 --------------------------------S------PMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDI 130 (564)
T ss_dssp --------------------------------C------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHH
T ss_pred --------------------------------C------HHHHHHHHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHH
Confidence 0 12345666778999999999988742 234577899999
Q ss_pred HHHHHHCCCeEeeCCCeE
Q psy6783 488 VPYLEKKGLLELDDGRKI 505 (1119)
Q Consensus 488 i~~L~~kG~~~e~dGA~~ 505 (1119)
+++|.++|++|+.++..+
T Consensus 131 ~~~L~~~G~iy~~~~~~~ 148 (564)
T 3kfl_A 131 WKKLAAKGDIYLGKYEGW 148 (564)
T ss_dssp HHHHHHHTCEEEEEEEEE
T ss_pred HHHHHHCCCEEEeeeeEE
Confidence 999999999999876544
No 10
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.92 E-value=5.3e-26 Score=276.54 Aligned_cols=144 Identities=22% Similarity=0.251 Sum_probs=125.2
Q ss_pred chHHHHHHHHHHHHHHhccccCCCCcceeecccCCCCCCccccchhHHHHhHhhhccCCCCCHHHHHHHHHHhhhhcccc
Q psy6783 10 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELAT 89 (1119)
Q Consensus 10 ~~~~~l~~~~~~a~~~~~~~l~~~~~~~~~e~~p~~~~~Gd~atn~A~~LAk~~~~~~~~~~P~~iA~~i~~~~~~~l~~ 89 (1119)
|+.+.|.+.|.+|+..+.. +..+.+++ |+++.|||||||+ |+|||.+ |++|++||++|++ .|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-----~~~~~v~~-~~~~~~gD~~~~~-~~lak~~-----~~~P~~iA~~i~~----~l~~ 64 (592)
T 1iq0_A 1 MLRRALEEAIAQALKEMGV-----PVRLKVAR-APKDKPGDYGVPL-FALAKEL-----RKPPQAIAQELKD----RLPL 64 (592)
T ss_dssp CCHHHHHHHHHHHHHTTSC-----CCCCCCEE-CSTTSSCSEEEEC-SHHHHHT-----TSCHHHHHHHHHH----TCCC
T ss_pred ChHHHHHHHHHHHHHhcCC-----CccceeeC-CCCCCCCcchhhH-HHHHHHc-----CCCHHHHHHHHHH----hccc
Confidence 4567777888777776422 23456888 8999999999996 9999999 9999999999998 4754
Q ss_pred CcccccchhhhcccCCceEEEEeCHH-HHHHHHHHHHHcCCCCCCCCCCceEEEEeeCCCccccCCcccCCCCchhhHHH
Q psy6783 90 NPSLAKVIDKIEAAKPGFVNVFLSRV-YAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDIL 168 (1119)
Q Consensus 90 ~~~~~~~i~~veiagpGfiN~~l~~~-~~~~~~~~il~~g~~~g~~~~~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~ 168 (1119)
+ ++|++|||+| |||||+|++. ++..++..++..|+.|| +|+|||+|||| +||+ ||| |+|++|
T Consensus 65 ~----~~~~~~~~~g-gfiN~~l~~~~~~~~~~~~~~~~~~~~g------~v~ve~~spn~---~~~~--HiG-H~R~~i 127 (592)
T 1iq0_A 65 P----EFVEEAVPVG-GYLNFRLRTEALLREALRPKAPFPRRPG------VVLVEHTSVNP---NKEL--HVG-HLRNIA 127 (592)
T ss_dssp C----TTEEEEEEET-TEEEEEECHHHHHHHHHSCCCCCCCEEE------EEEEECCCCCT---TSCC--BHH-HHHHHH
T ss_pred c----CcEEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcCcccC------eEEEEeeCCCC---CCCC--cch-HHHHHH
Confidence 3 3599999999 9999999999 67788888888888898 79999999999 9999 999 999999
Q ss_pred HHHHHHHHHHHcCCCCCc
Q psy6783 169 ISKAIAEEEKKQGISSSS 186 (1119)
Q Consensus 169 ~gd~lar~~~~~G~~v~~ 186 (1119)
+||+|||+++++||+|..
T Consensus 128 igD~laR~l~~~G~~V~~ 145 (592)
T 1iq0_A 128 LGDAIARILAYAGREVLV 145 (592)
T ss_dssp HHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHcCCceEE
Confidence 999999999999998864
No 11
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.92 E-value=3.4e-23 Score=244.82 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=104.9
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 411 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l 411 (1119)
.+.+|.+.+|||||.|++||||+|++|+||+|+|+|++.||+|..+++++|+|..|-.-
T Consensus 19 ~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~--------------------- 77 (461)
T 1li5_A 19 HAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKR--------------------- 77 (461)
T ss_dssp STTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHH---------------------
T ss_pred CCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHH---------------------
Confidence 35679999999999999999999999999999999999999999999999999543110
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEE-ec-cchhhhhHHHHHHHH
Q psy6783 412 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL-TE-RGESFYQKHMEQLVP 489 (1119)
Q Consensus 412 ~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f-~~-~geS~y~~~v~~vi~ 489 (1119)
|. +.|. .|+.+++.+.+.|.+.+++|||.+ +. ..+|.|.+.+.++++
T Consensus 78 --------------------A~------~~g~-----~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~ 126 (461)
T 1li5_A 78 --------------------AN------ENGE-----SFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTE 126 (461)
T ss_dssp --------------------HH------HTTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHH
T ss_pred --------------------HH------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHHH
Confidence 00 1122 277888889999999999999998 43 346778889999999
Q ss_pred HHHHCCCeEee-CCCeEEEc
Q psy6783 490 YLEKKGLLELD-DGRKIMWG 508 (1119)
Q Consensus 490 ~L~~kG~~~e~-dGA~~~~~ 508 (1119)
+|.++|++|+. +|+++...
T Consensus 127 ~L~~~G~aY~~~~g~v~f~~ 146 (461)
T 1li5_A 127 QLIAKGHAYVADNGDVMFDV 146 (461)
T ss_dssp HHHHTTSEEECTTSCEEECG
T ss_pred HHHHCCCEEEecCCCEEEec
Confidence 99999999999 99977543
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.90 E-value=1.3e-22 Score=245.90 Aligned_cols=138 Identities=9% Similarity=0.037 Sum_probs=101.5
Q ss_pred hhhhhhcccCCC--CCcccchhhhcc-ccCCchhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHHHHHHHHHH
Q psy6783 962 CIKYADLSHNRN--LDYVFSFDKMLD-DRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTL 1038 (1119)
Q Consensus 962 ai~~~~L~~~r~--~~~~Fd~d~~l~-~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~E~~Li~~L 1038 (1119)
|++|.+|+..+. .+++|||+.+.+ .+.+..-++.++++|++++++|..... ++ ..+.++.|+..|
T Consensus 367 alR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~--~~----------~~~~d~~ll~~l 434 (560)
T 3h99_A 367 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGV--LA----------SELADPQLYKTF 434 (560)
T ss_dssp HHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHSTTB--CC----------SSCSCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CC----------CccccHHHHHHH
Confidence 455666665443 578888888765 234555567888899999998863110 00 112356799999
Q ss_pred HhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccc--cccCCccchhhhHhHHHHHHHHHHHHHHHHhhhcCCCcC
Q psy6783 1039 LRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC--IEKDAEGKIKTVHTGRLLLAEATAKVMKKCFDILNIRTV 1116 (1119)
Q Consensus 1039 ~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~V--L~~~~~~~~~~~~~aRL~L~~at~~VL~~gL~LLGI~~~ 1116 (1119)
.++++.+.++.++++|+.+++++++++..+|.||+.++. +..+. .....+..++.++..+|++++.||.--.|
T Consensus 435 ~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l~k~~-----~~~~~~~~~~~~~~~~l~~~~~lL~P~~P 509 (560)
T 3h99_A 435 TDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQE-----GRDADLQAICSMGINLFRVLMTYLKPVLP 509 (560)
T ss_dssp HHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTST-----TCHHHHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCc-----CcHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999998874 33221 12456677888888999999999875443
No 13
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.86 E-value=3.6e-21 Score=229.97 Aligned_cols=121 Identities=20% Similarity=0.232 Sum_probs=94.0
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
.+++.|...+|||||++||||+|+++++|+++|.++..||+|.++.-+.|+|..+-.-+..
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~------------------- 64 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE------------------- 64 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHH-------------------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHH-------------------
Confidence 4689999999999999999999999999999999999999999999999998755321110
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEecc---chhhhhHHHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTER---GESFYQKHMEQLVP 489 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~---geS~y~~~v~~vi~ 489 (1119)
.|.. ++.+++.+.+.|.+.+.+||+.++.. .+..|.+.+.++++
T Consensus 65 ----------------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~ 111 (497)
T 2csx_A 65 ----------------------------LGIS-----PKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFE 111 (497)
T ss_dssp ----------------------------SSSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHH
T ss_pred ----------------------------cCCC-----HHHHHHHHHHHHHHHHHHhCCcCCCCccCCCHHHHHHHHHHHH
Confidence 0100 12356677788999999999987642 23448889999999
Q ss_pred HHHHCCCeEee--CCCeE
Q psy6783 490 YLEKKGLLELD--DGRKI 505 (1119)
Q Consensus 490 ~L~~kG~~~e~--dGA~~ 505 (1119)
+|.++|++|+. +|.+|
T Consensus 112 ~L~~~G~iY~~~~~~~~~ 129 (497)
T 2csx_A 112 ECYKRGDIYLGEYEGWYC 129 (497)
T ss_dssp HHHHTTCEEEEEC-----
T ss_pred HHHHCCCEEecceeeccC
Confidence 99999999987 46544
No 14
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.84 E-value=1.5e-20 Score=224.65 Aligned_cols=121 Identities=16% Similarity=0.175 Sum_probs=95.5
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
.+++.|...+|||+|++||||+|++++||+|+|.++..||+|.+..-+.|+|..+-.-+..
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~------------------- 62 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA------------------- 62 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHH-------------------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHH-------------------
Confidence 3579999999999999999999999999999999999999999998888888644221110
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec---cchhhhhHHHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE---RGESFYQKHMEQLVP 489 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~---~geS~y~~~v~~vi~ 489 (1119)
.|.+ |+.+++.+.+.|.+.+++||+.++. ..+..|.+.+.++++
T Consensus 63 ----------------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~ 109 (500)
T 2d5b_A 63 ----------------------------AGED-----PKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLK 109 (500)
T ss_dssp ----------------------------HTSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHH
T ss_pred ----------------------------cCCC-----HHHHHHHHHHHHHHHHHHhCCcCCCCcccCCHHHHHHHHHHHH
Confidence 0110 2345677778899999999998764 223447889999999
Q ss_pred HHHHCCCeEeeC--CCeE
Q psy6783 490 YLEKKGLLELDD--GRKI 505 (1119)
Q Consensus 490 ~L~~kG~~~e~d--GA~~ 505 (1119)
+|.++|++|+.+ |.++
T Consensus 110 ~L~~~G~iy~~~~~~~~~ 127 (500)
T 2d5b_A 110 KVYEAGDIYYGEYEGLYC 127 (500)
T ss_dssp HHHHTTCEEEEEEEEEEE
T ss_pred HHHHCCCEEecceEEecC
Confidence 999999999874 5443
No 15
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.84 E-value=3.9e-19 Score=213.70 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=98.2
Q ss_pred CCCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHH
Q psy6783 331 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 410 (1119)
Q Consensus 331 ~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~ 410 (1119)
|..+++.|--.-|||+|++||||+|++++||+|+|.++..||+|..+.-++|+|..+-.-+..
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~----------------- 71 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK----------------- 71 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-----------------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHH-----------------
Confidence 345678899999999999999999999999999999999999999999999988755321110
Q ss_pred HHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec-cchhh--hhHHHHHH
Q psy6783 411 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-RGESF--YQKHMEQL 487 (1119)
Q Consensus 411 l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~-~geS~--y~~~v~~v 487 (1119)
.|.. |+.+++.+.+.|.+.+++|||.++. ..++. |.+.+.++
T Consensus 72 ------------------------------~g~~-----~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~ 116 (524)
T 2x1l_A 72 ------------------------------EGIP-----AAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAI 116 (524)
T ss_dssp ------------------------------HTSC-----HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHH
T ss_pred ------------------------------cCCC-----HHHHHHHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHHHHH
Confidence 0111 2346677888899999999998863 23444 77899999
Q ss_pred HHHHHHCCCeEeeCCCeE
Q psy6783 488 VPYLEKKGLLELDDGRKI 505 (1119)
Q Consensus 488 i~~L~~kG~~~e~dGA~~ 505 (1119)
+++|.++|++|+.+|+.+
T Consensus 117 ~~~L~~~G~iY~~~~~v~ 134 (524)
T 2x1l_A 117 WKRMADAGDIYLDAYKGW 134 (524)
T ss_dssp HHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHCCCEEeeeeeee
Confidence 999999999999988854
No 16
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.82 E-value=1.7e-20 Score=179.93 Aligned_cols=108 Identities=25% Similarity=0.429 Sum_probs=90.2
Q ss_pred CCcchHHHHHHHHHHHHHHhccccCCCCcceeecccCCCCCCccccchhHHHHhHhhhccCCCCCHHHHHHHHHHhhhhc
Q psy6783 7 DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSE 86 (1119)
Q Consensus 7 ~~~~~~~~l~~~~~~a~~~~~~~l~~~~~~~~~e~~p~~~~~Gd~atn~A~~LAk~~~~~~~~~~P~~iA~~i~~~~~~~ 86 (1119)
+.|++.+.|.+.+.+|+..+.. +. ...+.+++ |+++.|||||||+||+|||.+ |++|++||++|++ .
T Consensus 2 ~~M~i~~~l~~~i~~al~~~~~--~~-~~~~~ve~-p~~~~~GD~a~n~a~~lak~~-----~~~P~~iA~~i~~----~ 68 (109)
T 3gdz_A 2 NAMNIQALLSEKVSQALIAAGA--PA-DCEPQVRQ-SAKVQFGDYQANGVMAVAKKL-----GMAPRQLAEQVLS----H 68 (109)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTC--CT-TCCCCEEE-CSSGGGCSEEECCHHHHHHHT-----TSCHHHHHHHHHH----H
T ss_pred CccCHHHHHHHHHHHHHHHcCC--Cc-cCCceeec-CCCCCcceeecHHHHHHHHHh-----CCCHHHHHHHHHH----h
Confidence 6788999999999999987622 21 13467888 899999999999999999999 9999999999998 4
Q ss_pred cccCcccccchhhhcccCCceEEEEeCHHHHHHHHHHHHHcCCCCC
Q psy6783 87 LATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQMKDIIVNGVQPP 132 (1119)
Q Consensus 87 l~~~~~~~~~i~~veiagpGfiN~~l~~~~~~~~~~~il~~g~~~g 132 (1119)
|..+ ++|++|||+|||||||+|++.++.+++.+|+.. .+||
T Consensus 69 l~~~----~~i~~vevagpGFINf~l~~~~~~~~l~~il~~-~~lG 109 (109)
T 3gdz_A 69 LDLN----GIANKVEIAGPGFINIFLDPAFLADNVNRALQS-ERLG 109 (109)
T ss_dssp CCCT----TTEEEEEEETTTEEEEEECHHHHHHHHHHHHTT-C---
T ss_pred cCcC----CcEeEEEEeCCCeEEEEECHHHHHHHHHHHHhc-ccCC
Confidence 7543 459999999999999999999999999999863 4554
No 17
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.79 E-value=4e-19 Score=170.40 Aligned_cols=104 Identities=28% Similarity=0.513 Sum_probs=90.4
Q ss_pred ccccHHHHHHHHHHHHHHHhcCcCCCCcceEeecCcccccCCccchhchHHHHHHHhhccCCCCCHHHHHHHHHHhhccc
Q psy6783 203 DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSE 282 (1119)
Q Consensus 203 ~~m~i~~~l~~~i~~al~~~~~~~~~~~~~ve~p~~~~~~~~GD~atn~Am~lAK~~k~~~~~~~P~~IA~~i~~~l~~~ 282 (1119)
+.|++++.+.+.+.+++....... ...+.|+.|+++ +|||||||+||.|||.+| ++|++||++|++.
T Consensus 2 ~~M~i~~~l~~~i~~al~~~~~~~-~~~~~ve~p~~~---~~GD~a~n~a~~lak~~~-----~~P~~iA~~i~~~---- 68 (109)
T 3gdz_A 2 NAMNIQALLSEKVSQALIAAGAPA-DCEPQVRQSAKV---QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLSH---- 68 (109)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCCT-TCCCCEEECSSG---GGCSEEECCHHHHHHHTT-----SCHHHHHHHHHHH----
T ss_pred CccCHHHHHHHHHHHHHHHcCCCc-cCCceeecCCCC---CcceeecHHHHHHHHHhC-----CCHHHHHHHHHHh----
Confidence 568999999999999998762111 234678899998 999999999999999996 9999999999999
Q ss_pred ccCCcccccceeeEEEeCCeEEEEEeCHHHHHHHHHHHHHc
Q psy6783 283 LATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 323 (1119)
Q Consensus 283 l~~~~~~~~~ie~vevagpGFINf~L~~~~~~~~l~~il~~ 323 (1119)
|+.+ ++|++++|+|||||||+|++.||.+.+.+++.+
T Consensus 69 l~~~----~~i~~vevagpGFINf~l~~~~~~~~l~~il~~ 105 (109)
T 3gdz_A 69 LDLN----GIANKVEIAGPGFINIFLDPAFLADNVNRALQS 105 (109)
T ss_dssp CCCT----TTEEEEEEETTTEEEEEECHHHHHHHHHHHHTT
T ss_pred cCcC----CcEeEEEEeCCCeEEEEECHHHHHHHHHHHHhc
Confidence 7654 679999999999999999999999999998754
No 18
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.65 E-value=1.4e-16 Score=188.64 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=45.8
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEE------EecccCCchhHHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVV------RLNHVGDWGTQFGMLI 391 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~------renyInD~G~Qi~~L~ 391 (1119)
..|+++++||||||||||||+|+|++|+.+||. ..|.-|. ++.++++++.||-.-+
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~~r~~~~~~~~I~~~l 72 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDLERSEREYEEKLMESL 72 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSCCSGGGHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCccccHHHHHHHHHHHH
Confidence 468999999999999999999999999999999 4455444 4678889999985443
No 19
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.61 E-value=2.5e-15 Score=176.62 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=105.0
Q ss_pred CCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHH
Q psy6783 332 KKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 411 (1119)
Q Consensus 332 ~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l 411 (1119)
.+.+|.+.+|+|||++++||||+|+.|++|+|+|.|+..||+|..+..+.|+|..|-.-+.
T Consensus 22 ~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~------------------- 82 (462)
T 3tqo_A 22 ESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAG------------------- 82 (462)
T ss_dssp STTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHH-------------------
T ss_pred CCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHH-------------------
Confidence 4568999999999999999999999999999999999999999999999999965522110
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec--cchhhhhHHHHHHHH
Q psy6783 412 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVP 489 (1119)
Q Consensus 412 ~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~--~geS~y~~~v~~vi~ 489 (1119)
+.|. -|+.+++.+.+.|.+.+.+|||.++. ...+.|.+.+.++++
T Consensus 83 ----------------------------~~g~-----~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~ 129 (462)
T 3tqo_A 83 ----------------------------ENKE-----SPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQ 129 (462)
T ss_dssp ----------------------------HTTS-----CHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHH
T ss_pred ----------------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHH
Confidence 0111 16677788888999999999998853 257788899999999
Q ss_pred HHHHCCCeEee-CCCeEEEcCC
Q psy6783 490 YLEKKGLLELD-DGRKIMWGED 510 (1119)
Q Consensus 490 ~L~~kG~~~e~-dGA~~~~~dd 510 (1119)
+|.++|++|+. +|.++.....
T Consensus 130 ~L~ekG~aY~~~~g~Vyfdv~~ 151 (462)
T 3tqo_A 130 KLLDNQYAYTGQNGDVFFDVRR 151 (462)
T ss_dssp HHHHHTSEEECTTSCEEECTTT
T ss_pred HHHHCCCEEEecCCcEEecccc
Confidence 99999999998 7887655543
No 20
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.61 E-value=7.6e-16 Score=179.99 Aligned_cols=125 Identities=15% Similarity=0.110 Sum_probs=102.5
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+.+|.+..++|+|+||+||||+|++|+||+|+|+|+..||+|..+++++|+|..+-.-+..
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~------------------- 97 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAER------------------- 97 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHH-------------------
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHH-------------------
Confidence 4578999999999999999999999999999999999999999999999999654221110
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcE-Eec-cchhhhhHHHHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTE-RGESFYQKHMEQLVPY 490 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~-f~~-~geS~y~~~v~~vi~~ 490 (1119)
.|. .|+.+++...+.|.+.+.+|||. ++. ..++.|.+.+++++++
T Consensus 98 ----------------------------~g~-----~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~ 144 (414)
T 3c8z_A 98 ----------------------------DGI-----DWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEK 144 (414)
T ss_dssp ----------------------------HTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHH
T ss_pred ----------------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHHH
Confidence 011 14556777888999999999998 764 3466687889999999
Q ss_pred HHHCCCeEeeC----CCeEEEcC
Q psy6783 491 LEKKGLLELDD----GRKIMWGE 509 (1119)
Q Consensus 491 L~~kG~~~e~d----GA~~~~~d 509 (1119)
|.++|++|+.+ |+++....
T Consensus 145 L~~kG~~Y~~~~~~e~~~~f~~~ 167 (414)
T 3c8z_A 145 LLASGAAYIVEDAEYPDVYFRAD 167 (414)
T ss_dssp HHHHTSEEECSCSSCCCEEECTT
T ss_pred HHHCCCEEeccCCcCCCEEEEch
Confidence 99999999998 98765443
No 21
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.58 E-value=4.4e-13 Score=166.59 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=95.7
Q ss_pred cEEEEEeeCCCCCCCccccccch-hcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRS-TIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRs-aiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+++.|....|||+|++||||+|+ ++++|+++|.++..||+|....-+.++|..+-.-+..-
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~------------------ 63 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE------------------ 63 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH------------------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc------------------
Confidence 47899999999999999999999 89999999999999999999999999998774432210
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc---hhhhhHHHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG---ESFYQKHMEQLVP 489 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g---eS~y~~~v~~vi~ 489 (1119)
.-+ ++.+++...+.|.+.+.+||++||.+. +..|...+++++.
T Consensus 64 ----------------------------G~~------p~e~~~~~~~~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f~ 109 (722)
T 1rqg_A 64 ----------------------------GRS------PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFL 109 (722)
T ss_dssp ----------------------------TCC------HHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHHH
T ss_pred ----------------------------CCC------HHHHHHHHHHHHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHHH
Confidence 001 234566777889999999999877532 3346678999999
Q ss_pred HHHHCCCeEeeCCC
Q psy6783 490 YLEKKGLLELDDGR 503 (1119)
Q Consensus 490 ~L~~kG~~~e~dGA 503 (1119)
+|.++|++|+.+..
T Consensus 110 ~L~~kG~iY~~~~~ 123 (722)
T 1rqg_A 110 KAYENGHLVKKVTK 123 (722)
T ss_dssp HHHHTTCEEEEEEE
T ss_pred HHHHCCCEEeccee
Confidence 99999999987543
No 22
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.45 E-value=3.6e-13 Score=162.91 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHH
Q psy6783 309 SRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388 (1119)
Q Consensus 309 ~~~~~~~~l~~il~~g~~~~~~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~ 388 (1119)
.+.|+...+.++++.|..++.. ..++|++.|. |||||||||||+|+|+++..+||- +-|-=+.|+ .|.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRi---eDt----- 171 (592)
T 3al0_C 104 GSMFITGAFFDILEVGPKKIRR-CFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRI---EDT----- 171 (592)
T ss_dssp ----------------CCCCCC-CCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECB---CCC-----
T ss_pred ChHHHHHHHHHHHHcChhhccc-CCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEe---cCc-----
Confidence 3557888999999999888753 3467999999 999999999999999999999983 222222221 110
Q ss_pred HHHHHHHhhcCCCCCCCCChHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q psy6783 389 MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 468 (1119)
Q Consensus 389 ~L~~~~~~r~~e~~~~~~~i~~l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l 468 (1119)
|+. +..+ .+.+.+.+.+..|
T Consensus 172 ------------------------------------D~~-------------r~~~-----------~~~~~I~~dL~wl 191 (592)
T 3al0_C 172 ------------------------------------DTE-------------RSSR-----------EYEQQILESLRWC 191 (592)
T ss_dssp ------------------------------------CSS-------------SCCH-----------HHHHHHHHHHHHT
T ss_pred ------------------------------------Chh-------------hccH-----------HHHHHHHHHHHHc
Confidence 000 0001 1223355557778
Q ss_pred CcEEec----------cchhhhhHHHHHHHHHHHHCCCeEe-----------------------eCCC---eEEEcCC--
Q psy6783 469 NVTLTE----------RGESFYQKHMEQLVPYLEKKGLLEL-----------------------DDGR---KIMWGED-- 510 (1119)
Q Consensus 469 ~i~f~~----------~geS~y~~~v~~vi~~L~~kG~~~e-----------------------~dGA---~~~~~dd-- 510 (1119)
|+.+++ +-.|.+.+...+++++|.++|++|. .+|. ++...++
T Consensus 192 Gl~~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~ 271 (592)
T 3al0_C 192 GLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGK 271 (592)
T ss_dssp TCCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSC
T ss_pred CCCCCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCC
Confidence 888775 2356666788999999999999997 3563 2211210
Q ss_pred ---------------CCCCCeEEEecCCCcccchhhH-HHHHHHhhhhCCCEEEEEeec
Q psy6783 511 ---------------RGSIPMTIVKSDGGFTYDTSDL-AAIRQRIEEEKADWIVYVTDL 553 (1119)
Q Consensus 511 ---------------kd~~~~VL~KSDGt~tY~t~DI-Ay~~~R~~~~~~d~iIyVv~~ 553 (1119)
.+..+.||.|+||.|||....+ -.| ..|++++| .|.
T Consensus 272 ~~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~-----~~githvi--rG~ 323 (592)
T 3al0_C 272 TSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDH-----LMRISHVF--RGE 323 (592)
T ss_dssp CEECCTTTCSEECCSSSSCCEEEECTTSCCCHHHHHHHHHH-----HTTCSBCC--EEG
T ss_pred ceeeecccceeeeccccCCCeEEEcCCCCeehhhHHHHHHH-----hcCCCeEE--Ech
Confidence 1113589999999999984443 333 24788885 675
No 23
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.25 E-value=1.3e-09 Score=138.48 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=96.6
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
.++.+|-..-|||||.+||||++|.+++|+|+|..+..||+|....-.+.+|..+-.-+... + .. + .
T Consensus 47 ~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~----G----~~-~-~--- 113 (917)
T 1ffy_A 47 NETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK----G----VD-R-K--- 113 (917)
T ss_dssp SCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH----T----CC-S-T---
T ss_pred CCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHc----C----CC-c-h---
Confidence 34688999999999999999999999999999999999999999999999999997655431 1 00 0 0
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~v 487 (1119)
.+ ..++|.+.+++ +.....+.+.+.+.+||+++|+.. ...|...++.+
T Consensus 114 --------~~-~~~~f~~~~~~------------------~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~ 166 (917)
T 1ffy_A 114 --------KM-STAEFREKCKE------------------FALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRI 166 (917)
T ss_dssp --------TT-CHHHHHHHHHH------------------HHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHH
T ss_pred --------hC-CHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHH
Confidence 00 12344444443 334455678888999999876421 23455689999
Q ss_pred HHHHHHCCCeEeeC
Q psy6783 488 VPYLEKKGLLELDD 501 (1119)
Q Consensus 488 i~~L~~kG~~~e~d 501 (1119)
+.+|.++|++|...
T Consensus 167 F~~l~~kGliYr~~ 180 (917)
T 1ffy_A 167 FGEMADKGLIYKGK 180 (917)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHcCCeEecc
Confidence 99999999999743
No 24
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.23 E-value=1.5e-11 Score=155.00 Aligned_cols=143 Identities=19% Similarity=0.277 Sum_probs=105.8
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
.++++|++.+|||||+|||||+||.++||+|+|.++..||+|....+.+++|+++...+..+.. .+ . ..+.
T Consensus 33 ~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~--~~-----~--~~~~ 103 (810)
T 1wkb_A 33 EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN--RD-----P--KTIW 103 (810)
T ss_dssp GGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHT--TC-----H--HHHH
T ss_pred CCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcc--cC-----c--hHHH
Confidence 4689999999999999999999999999999999999999999999999999999887665431 00 0 1111
Q ss_pred HHHHHhcccCCC-cHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec-----cch--hhhhHHH
Q psy6783 413 AFYKESKKRFDE-DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-----RGE--SFYQKHM 484 (1119)
Q Consensus 413 ~~y~~~~~~~~~-de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~-----~ge--S~y~~~v 484 (1119)
. +.+ .+.- ..++. ++ ...| ++++.+.+.+++.+.+||++||+ ..+ ..|...+
T Consensus 104 ~-~~~---~~g~~~~~~~-----------~~----~~~~-~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v 163 (810)
T 1wkb_A 104 I-YRD---VYKVPEEILW-----------TF----EDPI-NIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFI 163 (810)
T ss_dssp H-HHH---TSCCCHHHHH-----------GG----GSHH-HHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHH
T ss_pred H-HHH---HhCCCHHHHH-----------HH----HHHH-HHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHH
Confidence 1 110 1111 11110 00 1123 34677888999999999999984 235 6777889
Q ss_pred HHHHHHHHHCCCeEeeCCCe
Q psy6783 485 EQLVPYLEKKGLLELDDGRK 504 (1119)
Q Consensus 485 ~~vi~~L~~kG~~~e~dGA~ 504 (1119)
+.++.+|.++|++|+.+...
T Consensus 164 ~~~f~~L~~~Gliy~~~~~v 183 (810)
T 1wkb_A 164 EWQFWKLKEKGYIVKGAHRV 183 (810)
T ss_dssp HHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHCCCEEECCeee
Confidence 99999999999999876543
No 25
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.16 E-value=4.4e-09 Score=126.81 Aligned_cols=120 Identities=21% Similarity=0.257 Sum_probs=92.7
Q ss_pred CCCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHH
Q psy6783 331 NKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIAD 410 (1119)
Q Consensus 331 ~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~ 410 (1119)
.+.|+..|.-.=|+++|++||||+|+.++.|+++|.++..||+|.-.--++|+|..|-.-+. + ++.
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~--k--------~g~---- 71 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAK--Q--------KQV---- 71 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHH--H--------TTS----
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHH--H--------cCC----
Confidence 34677889888899999999999999999999999999999999999999999986633211 0 000
Q ss_pred HHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccch---hhhhHHHHHH
Q psy6783 411 LQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGE---SFYQKHMEQL 487 (1119)
Q Consensus 411 l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~ge---S~y~~~v~~v 487 (1119)
++ +.+++...+.+.+.+.+||+++|.... ..|...++++
T Consensus 72 --------------------------------~~------~e~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~ 113 (542)
T 3u1f_A 72 --------------------------------SP------YDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKEL 113 (542)
T ss_dssp --------------------------------CH------HHHHHHHHHHHHHHHHHHTCCCSEEEETTCHHHHHHHHHH
T ss_pred --------------------------------CH------HHHHHHHHHHHHHHHHHhCCccCcCccCCCHHHHHHHHHH
Confidence 11 134455566788889999998875433 2455789999
Q ss_pred HHHHHHCCCeEeeCC
Q psy6783 488 VPYLEKKGLLELDDG 502 (1119)
Q Consensus 488 i~~L~~kG~~~e~dG 502 (1119)
+.+|.++|++|+.++
T Consensus 114 f~~L~~~G~iy~~~~ 128 (542)
T 3u1f_A 114 WTKLEQKGDIYLGRY 128 (542)
T ss_dssp HHHHHHTTCEEEEEE
T ss_pred HHHHhhcCcEEecce
Confidence 999999999998654
No 26
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.01 E-value=4.1e-10 Score=133.29 Aligned_cols=130 Identities=24% Similarity=0.285 Sum_probs=98.3
Q ss_pred EEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHHH
Q psy6783 335 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 414 (1119)
Q Consensus 335 kV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~ 414 (1119)
+|-+=.+.|+|.+++||||+|+.|+.|+|+|.|+..||+|..+..+.|+|+|.|.- + ..+++|
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~---------D--ehddKI------ 104 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL---------D--DGEDKV------ 104 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----------------------------
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCC---------C--CCCcHH------
Confidence 67777899999999999999999999999999999999999999999999997741 0 011111
Q ss_pred HHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec--cchhhhhHHHHHHHHHHH
Q psy6783 415 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLE 492 (1119)
Q Consensus 415 y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~--~geS~y~~~v~~vi~~L~ 492 (1119)
.+.|.+ .|- -|+.+++...+.|.+.+.+|||.++. ...+.|.+.+.+++++|.
T Consensus 105 --------------~~~A~~------~g~-----~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~ 159 (501)
T 3sp1_A 105 --------------AKTARE------KGL-----TVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILE 159 (501)
T ss_dssp ----------------------------C-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHH
T ss_pred --------------HHHHHH------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHH
Confidence 112211 121 15678888889999999999997653 235677788999999999
Q ss_pred HCCCeEeeCCCeEE
Q psy6783 493 KKGLLELDDGRKIM 506 (1119)
Q Consensus 493 ~kG~~~e~dGA~~~ 506 (1119)
++|++|+.+|.++.
T Consensus 160 ~kG~aY~~~g~Vyf 173 (501)
T 3sp1_A 160 EKKITYFSNGNVYF 173 (501)
T ss_dssp HTTCEEEETTEEEE
T ss_pred HCCCEEEeCCcEEe
Confidence 99999999997654
No 27
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=98.91 E-value=4.8e-10 Score=134.76 Aligned_cols=136 Identities=18% Similarity=0.216 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCcEEEEEeeC---CCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCch--hH
Q psy6783 312 YAGEQIKDIIVNGVQPPTLNKKLRVLVDFSS---PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWG--TQ 386 (1119)
Q Consensus 312 ~~~~~l~~il~~g~~~~~~~~~kkV~VEfsS---pNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G--~Q 386 (1119)
|....+.++++.+.. ++ +|++ |||||++||||+|+++++|+++|.|++.||+|..+++++|.| ++
T Consensus 4 W~~~~a~~~~~~~~~------~~----~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rk 73 (523)
T 1irx_A 4 WADYIADKIIRERGE------KE----KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRK 73 (523)
T ss_dssp HHHHHHHHHHHHSCC------CS----EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCC
T ss_pred hHHHHHHHHHHhcCC------CC----eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhh
Confidence 555666777765432 22 4666 999999999999999999999999999999999999999999 54
Q ss_pred HH-HHHHHHHhhcCCCCCCCCChHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q psy6783 387 FG-MLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIY 465 (1119)
Q Consensus 387 i~-~L~~~~~~r~~e~~~~~~~i~~l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y 465 (1119)
+. .+..+.... . +.+.. +-.||. ..|+.+++.+.+.|.+.+
T Consensus 74 ip~~~~~a~~~~----~--G~~~~------------------------------~~p~p~--~~~~~~~~~~~~~~~~~l 115 (523)
T 1irx_A 74 VPRNVPQEWKDY----L--GMPIS------------------------------EVPDPW--GCHESYAEHFMRKFEEEV 115 (523)
T ss_dssp CCSSSCGGGGGG----T--TSBGG------------------------------GSCCTT--SSSSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH----c--CCCcc------------------------------cCCcch--hhHHHHHHHHHHHHHHHH
Confidence 41 010110000 0 00100 001111 113445667778899999
Q ss_pred hhcCcEEeccchhh-hhH-HHHHHHHHHHHCC
Q psy6783 466 DRLNVTLTERGESF-YQK-HMEQLVPYLEKKG 495 (1119)
Q Consensus 466 ~~l~i~f~~~geS~-y~~-~v~~vi~~L~~kG 495 (1119)
..||+.++...+|. |.+ .+.+++++|.++|
T Consensus 116 ~~Lgi~~D~~~~se~~~~g~~~~~i~~L~~~G 147 (523)
T 1irx_A 116 EKLGIEVDLLYASELYKRGEYSEEIRLAFEKR 147 (523)
T ss_dssp HTTTCCCEEEEHHHHHHTTTTHHHHHHHHHTH
T ss_pred HHcCCCceEEechhhccchHHHHHHHHHHHch
Confidence 99999876555676 666 8899999999999
No 28
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=98.90 E-value=4.6e-09 Score=124.29 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=98.6
Q ss_pred EEEEEeecC--cccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHH
Q psy6783 546 WIVYVTDLG--QGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 623 (1119)
Q Consensus 546 ~iIyVv~~~--Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~ 623 (1119)
..+||.+.. =..|+||+ |++|+||.|+|++++.||+|..+++++|||..+ +..
T Consensus 23 v~~yv~gPt~y~~~HiGHa-r~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki---~~~--------------------- 77 (461)
T 1li5_A 23 VGMYVCGITVYDLCHIGHG-RTFVAFDVVARYLRFLGYKLKYVRNITDIDDKI---IKR--------------------- 77 (461)
T ss_dssp EEEEECCCBSSSCCBHHHH-HHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHH---HHH---------------------
T ss_pred eeEEEcCCcCCCCCccccc-HHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHH---HHH---------------------
Confidence 457777743 46899998 999999999999999999999999999999532 111
Q ss_pred HHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccc-cc-cccchhhhhHHHHHHHHH
Q psy6783 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTL-TE-RGESFYQKHMEQLVPYLE 701 (1119)
Q Consensus 624 Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~F-d~-~gES~y~~~~~~vi~~l~ 701 (1119)
..+.|.+ |+.+++...+.|++.|++|||.| |. ..+|.|.+.+.++++.|.
T Consensus 78 -----------------------A~~~g~~-----~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~ 129 (461)
T 1li5_A 78 -----------------------ANENGES-----FVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLI 129 (461)
T ss_dssp -----------------------HHHTTCC-----HHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHH
T ss_pred -----------------------HHHcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHHHHHH
Confidence 1123443 99999999999999999999999 64 689999999999999999
Q ss_pred hcCCeeee-cCceEEEE
Q psy6783 702 KKGNLSLT-KKLGIVYV 717 (1119)
Q Consensus 702 ~~g~~~~~-~~~~~v~v 717 (1119)
++|.++.. +|.+++.+
T Consensus 130 ~~G~aY~~~~g~v~f~~ 146 (461)
T 1li5_A 130 AKGHAYVADNGDVMFDV 146 (461)
T ss_dssp HTTSEEECTTSCEEECG
T ss_pred HCCCEEEecCCCEEEec
Confidence 99999987 66655443
No 29
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.88 E-value=2.3e-08 Score=118.52 Aligned_cols=88 Identities=11% Similarity=-0.011 Sum_probs=58.2
Q ss_pred HHHHHHhhcCcEEec----------cchhhhhHHHHHHHHHHHHCCCeEe-----------------------eCCC---
Q psy6783 460 DFQKIYDRLNVTLTE----------RGESFYQKHMEQLVPYLEKKGLLEL-----------------------DDGR--- 503 (1119)
Q Consensus 460 ~~~~~y~~l~i~f~~----------~geS~y~~~v~~vi~~L~~kG~~~e-----------------------~dGA--- 503 (1119)
.+.+.+..||+.+|+ +-.|.+.+...+++++|.++|++|. .+|.
T Consensus 79 ~I~~dL~wlGl~wDe~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~ 158 (488)
T 3afh_A 79 QILESLRWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVT 158 (488)
T ss_dssp HHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEE
T ss_pred HHHHHHHHcCCCCCcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCce
Confidence 355557778888775 2356667788999999999999996 3453
Q ss_pred eEEEcCC-----------------CCCCCeEEEecCCCcccchhhHHHHHHHhhhhCCCEEEEEeec
Q psy6783 504 KIMWGED-----------------RGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553 (1119)
Q Consensus 504 ~~~~~dd-----------------kd~~~~VL~KSDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~ 553 (1119)
+....++ .+..+.||.||||.|||.-..+ .+-. ..+.+++| .|.
T Consensus 159 iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~DG~PtY~lA~v---VDD~-~mgIThVi--RG~ 219 (488)
T 3afh_A 159 IKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVV---VDDH-LMRISHVF--RGE 219 (488)
T ss_dssp EEECCCSSEEEEEETTTEEEEEEGGGSCCEEEECTTSCBCHHHHHH---HHHH-HTTCSEEE--EEG
T ss_pred EEEECCCCceeEEeccceeEeecCCCCCCeEEEecCCCeehhhHHH---HHHH-hcCCCEEE--Ech
Confidence 2111110 1112479999999999974444 3333 35788886 665
No 30
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=98.84 E-value=1.6e-08 Score=127.58 Aligned_cols=145 Identities=15% Similarity=0.097 Sum_probs=102.8
Q ss_pred eCHHHHHHHHHHHHHcCCCCCC--CCCCcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchh
Q psy6783 308 LSRVYAGEQIKDIIVNGVQPPT--LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385 (1119)
Q Consensus 308 L~~~~~~~~l~~il~~g~~~~~--~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~ 385 (1119)
.++..+.....+.-++...|.. ....++..|--.-|||+|+|||||+|+.+++|+|+|.++..||+|....+++|+|.
T Consensus 25 y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Gl 104 (880)
T 4arc_A 25 YRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGL 104 (880)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCST
T ss_pred CChHHHHHHHHHHHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCc
Confidence 3455555555444444333321 11234555655679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q psy6783 386 QFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIY 465 (1119)
Q Consensus 386 Qi~~L~~~~~~r~~e~~~~~~~i~~l~~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y 465 (1119)
++-..+.. . +. .+ +.++....+.+.+.+
T Consensus 105 pie~~a~~--~--------g~------------------~p------------------------~~~~~~~i~~~~~~l 132 (880)
T 4arc_A 105 PAEGAAVK--N--------NT------------------AP------------------------APWTYDNIAYMKNQL 132 (880)
T ss_dssp HHHHHHHH--T--------TS------------------CH------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--c--------CC------------------CH------------------------HHHHHHHHHHHHHHH
Confidence 98653321 0 00 00 012233446678889
Q ss_pred hhcCcEEecc-----chhhhhHHHHHHHHHHHHCCCeEeeCCCe
Q psy6783 466 DRLNVTLTER-----GESFYQKHMEQLVPYLEKKGLLELDDGRK 504 (1119)
Q Consensus 466 ~~l~i~f~~~-----geS~y~~~v~~vi~~L~~kG~~~e~dGA~ 504 (1119)
.+||+++|+. -+..|...++.++.+|.++|++|+.++..
T Consensus 133 ~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v 176 (880)
T 4arc_A 133 KMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAV 176 (880)
T ss_dssp HHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeE
Confidence 9999998742 23456678999999999999999987664
No 31
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.80 E-value=7.7e-09 Score=115.58 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=77.5
Q ss_pred HHHHHHhhcCcEEec--cchhhhhHHHHHHHHHHHHCCCeEee--------------CC------------CeEEEcCC-
Q psy6783 460 DFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEKKGLLELD--------------DG------------RKIMWGED- 510 (1119)
Q Consensus 460 ~~~~~y~~l~i~f~~--~geS~y~~~v~~vi~~L~~kG~~~e~--------------dG------------A~~~~~dd- 510 (1119)
.+.+.+..||+.+++ .-.|.+.+...+++++|.++|++|.. +| +++...++
T Consensus 59 ~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~ 138 (298)
T 1nzj_A 59 TILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHP 138 (298)
T ss_dssp HHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSC
T ss_pred HHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCc
Confidence 455667788887764 33577778899999999999999973 11 22211111
Q ss_pred -----------------CCCCCeEEEecCCCcccchhhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHH
Q psy6783 511 -----------------RGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTIS 573 (1119)
Q Consensus 511 -----------------kd~~~~VL~KSDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~ 573 (1119)
.+..+.||.|+||.||| ++|++.+... .|++.+|. |. + |+.. |. .-.
T Consensus 139 ~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG~PtY---~la~vvdD~~-~giThvIr--G~--D-~l~~----t~---~q~ 202 (298)
T 1nzj_A 139 VTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAY---NLAVVVDDHF-QGVTEIVR--GA--D-LIEP----TV---RQI 202 (298)
T ss_dssp CCEEEETTTEEEECCHHHHHSCCEEECTTSCBCH---HHHHHHHHHH-TTCCEEEE--EG--G-GHHH----HH---HHH
T ss_pred ccceehhhCcccccCcccCCCCEEEECCCCCEee---eeeeeeEHHh-cCCCEEEe--Cc--c-cccc----HH---HHH
Confidence 01124799999999999 6999999874 58999999 65 3 3222 11 112
Q ss_pred HHHHHcCCceeeecccC
Q psy6783 574 RLLEYLGHDVVRLNHVG 590 (1119)
Q Consensus 574 ~l~~~~G~~V~r~NylG 590 (1119)
-|++++||.....-|++
T Consensus 203 ~l~~alG~~~p~~~H~p 219 (298)
T 1nzj_A 203 SLYQLFGWKVPDYIHLP 219 (298)
T ss_dssp HHHHHHTCCCCEEEEEC
T ss_pred HHHHHcCCCCCeEEEee
Confidence 46799999986665544
No 32
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=98.69 E-value=4.9e-08 Score=123.71 Aligned_cols=122 Identities=10% Similarity=-0.013 Sum_probs=88.5
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhcc-cCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhh
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLS-HNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLR 1016 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~-~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~ 1016 (1119)
++|.++-.++. .++.+..|.=|++|..|+ ....+++.|+++.+.. ..-.+.|+.+++++...... +
T Consensus 638 MSKSkGNvVdP---~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~--------~~~~l~Rl~n~~~~~~~~~~--~ 704 (878)
T 2v0c_A 638 MSKSKGNGVMV---GPFVKEQGADIARITILFAAPPENEMVWTEEGVQG--------AWRFLNRIYRRVAEDREALL--E 704 (878)
T ss_dssp CSGGGTCCCBH---HHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHH--------HHHHHHHHHHHHHHHHHHHH--T
T ss_pred hhccCCCcccH---HHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHH--------HHHHHHHHHHHHHHHHhccc--c
Confidence 34444445554 445567888899999998 8899999999988654 23578899999886521100 0
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhh
Q psy6783 1017 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYD 1073 (1119)
Q Consensus 1017 ~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~ 1073 (1119)
......... ..+.++.|+..|.+..+.+..+.+++.++....++++++..+++|-.
T Consensus 705 ~~~~~~~~~-l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~ 760 (878)
T 2v0c_A 705 TSGVFQAEA-LEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRK 760 (878)
T ss_dssp CCCCCCGGG-CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccc-CCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhcc
Confidence 000001111 25678899999999999999999999999999999999999999853
No 33
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=98.65 E-value=2.8e-08 Score=125.56 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=97.7
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
.++.+|-...|||+|+|||||+|+.+|+|+++|..+..||+|......+++|..+-..+... .. . .+-.++.
T Consensus 37 ~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~---l~----~-~~~~~~~ 108 (821)
T 1ile_A 37 GPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKK---LG----L-KSKREIE 108 (821)
T ss_dssp SCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHH---TT----C-CSHHHHH
T ss_pred CCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHH---hc----c-cccchHh
Confidence 34677888999999999999999999999999999999999999999999999997655321 11 0 0111111
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEec-----cchhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-----RGESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~-----~geS~y~~~v~~v 487 (1119)
++ ..++|. +.++.+++...+.+++.+.+||+++|+ .-+..|...++.+
T Consensus 109 ~~---------g~~~f~------------------~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~ 161 (821)
T 1ile_A 109 AY---------GIERFN------------------QACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWS 161 (821)
T ss_dssp HH---------CHHHHH------------------HHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHH
T ss_pred hc---------CHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHH
Confidence 11 112333 334444555667788889999965432 1234556789999
Q ss_pred HHHHHHCCCeEeeCCC
Q psy6783 488 VPYLEKKGLLELDDGR 503 (1119)
Q Consensus 488 i~~L~~kG~~~e~dGA 503 (1119)
+.+|.++|++|...--
T Consensus 162 f~~L~~~Gliy~~~~~ 177 (821)
T 1ile_A 162 LKNLFDRGLLYRDHKV 177 (821)
T ss_dssp HHHHHHTTCEEEECCE
T ss_pred HHHHHHcCCeeecCcc
Confidence 9999999999986543
No 34
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=98.50 E-value=3.5e-07 Score=106.88 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=92.3
Q ss_pred EEEEEeecC--cccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHH
Q psy6783 546 WIVYVTDLG--QGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAF 623 (1119)
Q Consensus 546 ~iIyVv~~~--Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~ 623 (1119)
..+||.+-- =..|+||+ |++|+||.|+|+++..||+|..+.++.|+|...
T Consensus 40 v~~y~~gPt~yg~~HiGHa-r~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki--------------------------- 91 (414)
T 3c8z_A 40 ATMYVCGITPYDATHLGHA-ATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPL--------------------------- 91 (414)
T ss_dssp EEEEECCCCTTSCCBHHHH-HHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHH---------------------------
T ss_pred ceEEeCCCcCCCCcCcccc-HHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHH---------------------------
Confidence 456776642 25899998 999999999999999999999999999998632
Q ss_pred HHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhccc-ccc-cccchhhhhHHHHHHHHH
Q psy6783 624 YKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVT-LTE-RGESFYQKHMEQLVPYLE 701 (1119)
Q Consensus 624 Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~-Fd~-~gES~y~~~~~~vi~~l~ 701 (1119)
..+|++ .|. .|+.+++..++.|++.+++|||. ||. ..+|.|.+.+.++++.|.
T Consensus 92 --------------~~~A~~------~g~-----~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~ 146 (414)
T 3c8z_A 92 --------------FERAER------DGI-----DWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLL 146 (414)
T ss_dssp --------------HHHHHH------HTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHH
T ss_pred --------------HHHHHH------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHHHHH
Confidence 111111 232 37788999999999999999998 995 688889889999999999
Q ss_pred hcCCeeeec
Q psy6783 702 KKGNLSLTK 710 (1119)
Q Consensus 702 ~~g~~~~~~ 710 (1119)
++|.++..+
T Consensus 147 ~kG~~Y~~~ 155 (414)
T 3c8z_A 147 ASGAAYIVE 155 (414)
T ss_dssp HHTSEEECS
T ss_pred HCCCEEecc
Confidence 999998766
No 35
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=98.42 E-value=6.9e-07 Score=112.95 Aligned_cols=134 Identities=17% Similarity=0.213 Sum_probs=98.3
Q ss_pred CcEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy6783 333 KLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 412 (1119)
Q Consensus 333 ~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~ 412 (1119)
+++..|-..-|||||+|||||+++.+++|+++|..+..||+|....-...+|..+-.-+. ..... .+....+
T Consensus 33 ~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve---k~l~~---~g~~~~~-- 104 (862)
T 1gax_A 33 KPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVE---RLLLK---EGKTRHD-- 104 (862)
T ss_dssp SCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHH---TTTTT---TTSCCSC--
T ss_pred CCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHH---HHHHH---cCCChHH--
Confidence 467889999999999999999999999999999999999999999999999986653322 11111 1111100
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----hhhhhHHHHHH
Q psy6783 413 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----ESFYQKHMEQL 487 (1119)
Q Consensus 413 ~~y~~~~~~~~~de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----eS~y~~~v~~v 487 (1119)
+ ..++|.+.+++ .++.....+.+.+.+||+++|+.. +..|...+..+
T Consensus 105 ---------~-~~~~f~~~~~~------------------~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~ 156 (862)
T 1gax_A 105 ---------L-GREKFLERVWQ------------------WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYA 156 (862)
T ss_dssp ---------C-CTTHHHHHHHH------------------HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHH
T ss_pred ---------c-CHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHH
Confidence 1 12345554443 234556678888999999988522 34566789999
Q ss_pred HHHHHHCCCeEeeCC
Q psy6783 488 VPYLEKKGLLELDDG 502 (1119)
Q Consensus 488 i~~L~~kG~~~e~dG 502 (1119)
+.+|.++|++|+..-
T Consensus 157 F~~L~~kGliYrg~~ 171 (862)
T 1gax_A 157 FSRYYHEGLAYRAPR 171 (862)
T ss_dssp HHHHHTTSSEEEECC
T ss_pred HHHHHHCCCEEeccc
Confidence 999999999998654
No 36
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.41 E-value=1.8e-06 Score=102.55 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=47.6
Q ss_pred CceeeeeeEEECCCCcccccccCCeeeHHHHHHHH--HHHHHHHHHhccCCCCCChhhhHHHHHHhhhceeeeecccCCC
Q psy6783 745 RMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEG--LRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNR 822 (1119)
Q Consensus 745 ~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~--~~~~~~~l~~~~~~~~~~~~~~~~~a~~v~~gaI~~~dl~~~r 822 (1119)
.+-|++ ++++.+|.+||+|+|. +.+.++.+++ -+.....+...+-... ...+.-...+ +|...|+..-.
T Consensus 243 ~~~h~p--lil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~lG~s~~-~~~e~~s~~e-----li~~f~~~~~~ 313 (498)
T 2ja2_A 243 KFAHLP--TVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALLGWSIA-DDHDLFGLDE-----MVAAFDVADVN 313 (498)
T ss_dssp EEEEEC--CEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTSSCCSC-SSCCCCCHHH-----HHHHCCGGGCC
T ss_pred eEEEee--eeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHhCCCCC-cccccCCHHH-----HHhhCChhhcC
Confidence 566765 6889999999999997 5787777643 2222333433332210 0001100111 13334444444
Q ss_pred CCcccccccccccccCC
Q psy6783 823 NLDYVFSFDKMLDDRGN 839 (1119)
Q Consensus 823 ~~~y~F~~~~~~~~~g~ 839 (1119)
....+||+++...+++.
T Consensus 314 ~~~a~fd~~kL~~~N~~ 330 (498)
T 2ja2_A 314 SSPARFDQKKADALNAE 330 (498)
T ss_dssp CSCEECCHHHHHHHHHH
T ss_pred ccccccCHHHHHHhhHH
Confidence 55678999998766543
No 37
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.37 E-value=2.6e-06 Score=100.77 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=49.4
Q ss_pred HcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHH--HHHHHHHHHhccCCC----CCChhhhHHHHHHh
Q psy6783 735 KAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEG--LRRSLDKLKDKNRHT----ELTPTELSEAQQAV 808 (1119)
Q Consensus 735 ~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~--~~~~~~~l~~~~~~~----~~~~~~~~~~a~~v 808 (1119)
.+|+..| .+-|++ +|++.+|+|+|+|+|. +.+.++.+++ -+.....+...+-.. .++.++
T Consensus 243 aLG~~~P---~f~Hlp--Li~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e-------- 308 (490)
T 4g6z_A 243 ALGGEVP---VYAHLP--TVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQ-------- 308 (490)
T ss_dssp HTTCCCC---EEEEEC--CEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHH--------
T ss_pred HcCCCCC---eEEEec--ceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHH--------
Confidence 4566444 678875 7899999999999995 6677665443 222233444333211 112222
Q ss_pred hhceeeeecccCCCCCcccccccccccccC
Q psy6783 809 AYGCIKYADLSHNRNLDYVFSFDKMLDDRG 838 (1119)
Q Consensus 809 ~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g 838 (1119)
+|..+|+..=...+-.||+++...+++
T Consensus 309 ---li~~F~~~~~~~~~~~fd~~KL~~~N~ 335 (490)
T 4g6z_A 309 ---FVEWFDLEHLGKSPAQYDHNKLNWLNN 335 (490)
T ss_dssp ---HHHHCCGGGBCSSCEECCHHHHHHHHH
T ss_pred ---HHhhCCHhhCCCCCCccCHHHHHHHHH
Confidence 222334444444566788888755443
No 38
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=98.35 E-value=8.8e-07 Score=107.42 Aligned_cols=126 Identities=14% Similarity=0.079 Sum_probs=102.0
Q ss_pred hcccCCCCChhhhHHHHHHHhhhhhhhhhcc-cCCCCCcccchhhhcc-ccCCchhHHHHHHHHHHHHHHHhCCCcchhh
Q psy6783 939 DKNRHTELTPTELSEAQQAVAYGCIKYADLS-HNRNLDYVFSFDKMLD-DRGNTAVYLLYAYTRIASIARTAGINSEDLR 1016 (1119)
Q Consensus 939 ~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~-~~r~~~~~Fd~d~~l~-~~gnt~~YlQYahARi~SIlrKa~~~~~~l~ 1016 (1119)
+|.++..++..+ +.+..|.-|++|.+|+ ....+|++|+|+.+.+ .+.+.+.+++|+++|+++++++.+.. ++
T Consensus 341 SKS~GNvV~p~d---~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~g~---~p 414 (564)
T 3kfl_A 341 SKSLGNAFDPVE---KAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGM---WP 414 (564)
T ss_dssp CTTTTCCCCHHH---HHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSB---CC
T ss_pred cccCCCCCCHHH---HHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---CC
Confidence 444445555443 4567899999999999 8889999999999987 46788999999999999988733211 11
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhccc
Q psy6783 1017 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1076 (1119)
Q Consensus 1017 ~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~ 1076 (1119)
. ....++.++.|+..|.++++.+..+.++++|+..++++++|+..+|.||+.++
T Consensus 415 -----~-~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~k 468 (564)
T 3kfl_A 415 -----E-PAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENA 468 (564)
T ss_dssp -----C-CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -----C-CCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 11135778899999999999999999999999999999999999999999876
No 39
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=98.35 E-value=1.6e-06 Score=104.49 Aligned_cols=156 Identities=12% Similarity=0.075 Sum_probs=111.3
Q ss_pred hcccCCCCChhhhHHHHHHHhhhhhhhhhcc-cCCCCCcccchhhhccc-cCCchhHHHHHHHHHHHHHHHhCCCcchhh
Q psy6783 939 DKNRHTELTPTELSEAQQAVAYGCIKYADLS-HNRNLDYVFSFDKMLDD-RGNTAVYLLYAYTRIASIARTAGINSEDLR 1016 (1119)
Q Consensus 939 ~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~-~~r~~~~~Fd~d~~l~~-~gnt~~YlQYahARi~SIlrKa~~~~~~l~ 1016 (1119)
+|.++..++.. ++.+..|.-|++|.+++ .+..++++||++.+.+. +.+...+++++++|+++++++..... .+
T Consensus 323 SKS~GNvi~p~---d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~--~p 397 (536)
T 4dlp_A 323 SKSVGNVIDPF---ELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGK--VP 397 (536)
T ss_dssp -------CCHH---HHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTB--CC
T ss_pred cccCCCCCCHH---HHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CC
Confidence 34444445543 44567999999999999 68899999999999863 34566689999999999998863210 00
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccc--cccCCccchhhhHhHHH
Q psy6783 1017 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC--IEKDAEGKIKTVHTGRL 1094 (1119)
Q Consensus 1017 ~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~V--L~~~~~~~~~~~~~aRL 1094 (1119)
.....++.++.|+..|.++++.+..+.++++|+.+++++++++..+|.||+.++. +..+. ...+.
T Consensus 398 ------~~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~~~~-------~~~~~ 464 (536)
T 4dlp_A 398 ------QPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTD-------PARMG 464 (536)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC-------HHHHH
T ss_pred ------CcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCchhhcCCC-------HHHHH
Confidence 1112467889999999999999999999999999999999999999999998863 32211 12233
Q ss_pred HHHHHHHHHHHHHhhhcC
Q psy6783 1095 LLAEATAKVMKKCFDILN 1112 (1119)
Q Consensus 1095 ~L~~at~~VL~~gL~LLG 1112 (1119)
..+..+..+|+..+.||.
T Consensus 465 ~~~~~l~~~l~~~~~lL~ 482 (536)
T 4dlp_A 465 TVLYVTAEVLRRVGIMVQ 482 (536)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 445555556665555554
No 40
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=98.35 E-value=1.3e-06 Score=103.05 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=93.3
Q ss_pred EEEEeec--CcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHH
Q psy6783 547 IVYVTDL--GQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624 (1119)
Q Consensus 547 iIyVv~~--~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y 624 (1119)
.+||-|- --..|+||+ |+.|++|.|+|.++..||+|.-+..+.|+|... +..
T Consensus 27 ~~YvcGPtvy~~~HIGHa-R~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKI---i~~---------------------- 80 (462)
T 3tqo_A 27 KLYVCGMTVYDYMHIGHG-RSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKI---IKR---------------------- 80 (462)
T ss_dssp EEEECCCBTTSCCBHHHH-HHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHH---HHH----------------------
T ss_pred EEEeCCCcCCCCCchhhh-HHHHHHHHHHHHHHHcCCceEEecCcCCCCcHH---HHH----------------------
Confidence 4566542 125799997 999999999999999999999999999998642 111
Q ss_pred HHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc--cccchhhhhHHHHHHHHHh
Q psy6783 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEK 702 (1119)
Q Consensus 625 ~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~--~gES~y~~~~~~vi~~l~~ 702 (1119)
| -+.|.+ |+.+++-.++.|++.+++|||.++. -.+|.|.+.+.++++.|.+
T Consensus 81 ----------------A------~~~g~~-----~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~e 133 (462)
T 3tqo_A 81 ----------------A------GENKES-----PAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLD 133 (462)
T ss_dssp ----------------H------HHTTSC-----HHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHH
T ss_pred ----------------H------HHcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHH
Confidence 1 122332 8999999999999999999999974 4899999999999999999
Q ss_pred cCCeeee-cCceE
Q psy6783 703 KGNLSLT-KKLGI 714 (1119)
Q Consensus 703 ~g~~~~~-~~~~~ 714 (1119)
+|+++.. .|.+.
T Consensus 134 kG~aY~~~~g~Vy 146 (462)
T 3tqo_A 134 NQYAYTGQNGDVF 146 (462)
T ss_dssp HTSEEECTTSCEE
T ss_pred CCCEEEecCCcEE
Confidence 9999988 45433
No 41
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.24 E-value=2.2e-06 Score=102.52 Aligned_cols=87 Identities=13% Similarity=0.222 Sum_probs=51.5
Q ss_pred HcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHH--HHHHHHHHhccCC-----CCCChhhhHHHHHH
Q psy6783 735 KAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL--RRSLDKLKDKNRH-----TELTPTELSEAQQA 807 (1119)
Q Consensus 735 ~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~--~~~~~~l~~~~~~-----~~~~~~~~~~~a~~ 807 (1119)
.+|+..| .+-|++ +|++.+|+++|.|+|. ..+.+..+++. +.....+...+-. ..++-++
T Consensus 252 alg~~~P---~y~H~p--li~~~~g~kLSKR~~~-~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~e------- 318 (512)
T 4gri_A 252 AFKWKPP---IYCHLP--MVMGNDGQKLSKRHGS-TALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKND------- 318 (512)
T ss_dssp HHTCCCC---EEEEEC--CCBCTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHH-------
T ss_pred HcCCCCC---eEEecc--hhccccccccCccccc-ccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHH-------
Confidence 3476544 678875 8999999999999995 45666665542 3334444443321 1233333
Q ss_pred hhhceeeeecccCCCCCcccccccccccccC
Q psy6783 808 VAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 838 (1119)
Q Consensus 808 v~~gaI~~~dl~~~r~~~y~F~~~~~~~~~g 838 (1119)
+|..+|+..=-..+-.||+++...+++
T Consensus 319 ----li~~Fdl~~v~ks~a~fD~~KL~~~N~ 345 (512)
T 4gri_A 319 ----LEQFFSIEKINKSPAIFDYHKLDFFNS 345 (512)
T ss_dssp ----HHHHCCGGGBCSSCCBCCHHHHHHHHH
T ss_pred ----HHHHHHhcCCCCCCccccHHHHHHHHH
Confidence 222344444344566799998876554
No 42
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.21 E-value=1.2e-05 Score=95.01 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCCCCCCccccccchhcHHHHHHH
Q psy6783 342 SPNIAKEMHVGHLRSTIIGDTISR 365 (1119)
Q Consensus 342 SpNptkpLHVGHlRsaiiGDsLar 365 (1119)
.|.|||+|||||+|++++--..||
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar 30 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWAR 30 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH
Confidence 699999999999999997766666
No 43
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=98.18 E-value=5.7e-06 Score=99.32 Aligned_cols=128 Identities=12% Similarity=0.033 Sum_probs=97.3
Q ss_pred hcccCCCCChhhhHHHHHHHhhhhhhhhhcc-cCCCCCcccchhhhcccc-CCchhHHHHHHHHHHHHHHHhCCCcchhh
Q psy6783 939 DKNRHTELTPTELSEAQQAVAYGCIKYADLS-HNRNLDYVFSFDKMLDDR-GNTAVYLLYAYTRIASIARTAGINSEDLR 1016 (1119)
Q Consensus 939 ~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~-~~r~~~~~Fd~d~~l~~~-gnt~~YlQYahARi~SIlrKa~~~~~~l~ 1016 (1119)
+|..+-.++.. ++.+..|..|++|.+|+ ....++++|+++.+.+.. .+-.-.+.+...|+.+++++.... ..
T Consensus 312 SKS~GN~v~p~---d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~--~~- 385 (524)
T 2x1l_A 312 SKSIGNVVDPV---NLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGA--AV- 385 (524)
T ss_dssp ETTTEESSCHH---HHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTT--BC-
T ss_pred CCcCCCCCCHH---HHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC-
Confidence 34444445543 34467899999999998 788999999999987542 223334777888999988875211 00
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccc
Q psy6783 1017 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077 (1119)
Q Consensus 1017 ~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~V 1077 (1119)
......++.++.|+..|.++++.+.++.++++|+.++.++++++..+|.||+.++.
T Consensus 386 -----~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~ 441 (524)
T 2x1l_A 386 -----PDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEP 441 (524)
T ss_dssp -----CCCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred -----CCccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 00112357789999999999999999999999999999999999999999998864
No 44
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=98.13 E-value=2.9e-06 Score=108.81 Aligned_cols=140 Identities=19% Similarity=0.264 Sum_probs=99.0
Q ss_pred cEEEEEeeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHHHHHHHHHhhcCCCCCCCCChHHHHH
Q psy6783 334 LRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQA 413 (1119)
Q Consensus 334 kkV~VEfsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~~L~~~~~~r~~e~~~~~~~i~~l~~ 413 (1119)
++..|-..-|||||.|||||+||.+++|+++|..+..||+|....-...+|..+...+..+.. .+ -..+.
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~--~~-------~~~~~- 103 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN--RD-------PKTIW- 103 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHT--TC-------HHHHH-
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhc--cc-------hhHHH-
Confidence 578899999999999999999999999999999999999999999999999999766554321 00 00111
Q ss_pred HHHHhcccCCC-cHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcEEeccc-----h--hhhhHHHH
Q psy6783 414 FYKESKKRFDE-DEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG-----E--SFYQKHME 485 (1119)
Q Consensus 414 ~y~~~~~~~~~-de~~~~~a~~~~~~le~gd~e~~~lW~~~~~~s~~~~~~~y~~l~i~f~~~g-----e--S~y~~~v~ 485 (1119)
.+. +.+.- .+++. +.. ++ +.+++.....+++.+.+||+++|+.. . ..|...++
T Consensus 104 ~~~---~~~gi~~~~~~--------~~~--~~------~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~ 164 (967)
T 1wz2_A 104 IYR---DVYKVPEEILW--------TFE--DP------INIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIE 164 (967)
T ss_dssp HHH---TTSCCCHHHHH--------GGG--SH------HHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHH
T ss_pred HHH---HhcCCCHHHHH--------HHH--HH------HHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHH
Confidence 110 01110 11111 000 11 23355666778889999999988532 3 45667899
Q ss_pred HHHHHHHHCCCeEeeCC
Q psy6783 486 QLVPYLEKKGLLELDDG 502 (1119)
Q Consensus 486 ~vi~~L~~kG~~~e~dG 502 (1119)
.++.+|.++|++|...-
T Consensus 165 ~~F~~L~~kGliyr~~~ 181 (967)
T 1wz2_A 165 WQFWKLKEKGYIVKGAH 181 (967)
T ss_dssp HHHHHTTTTTCEEECCC
T ss_pred HHHHHHHHCCCEEEece
Confidence 99999999999998543
No 45
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=98.09 E-value=7e-06 Score=97.40 Aligned_cols=126 Identities=23% Similarity=0.207 Sum_probs=91.4
Q ss_pred EEEEeecC--cccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHH
Q psy6783 547 IVYVTDLG--QGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFY 624 (1119)
Q Consensus 547 iIyVv~~~--Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y 624 (1119)
-+||.|-- =..|+||+ |+.|+.|.|+|.++..||+|.-+..+.|+|.|.|.- .+
T Consensus 44 ~~YvcgPTvYg~~HIGHa-r~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~----De------------------- 99 (501)
T 3sp1_A 44 KVYACGPTVYNYAHIGNF-RTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL----DD------------------- 99 (501)
T ss_dssp EEEECCCBCSSCCCHHHH-HHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-----------------------------
T ss_pred eEEeCCCcCCCCcchhhh-HHHHHHHHHHHHHHHcCCceeEEeeecccccccCCC----CC-------------------
Confidence 35554421 25799997 999999999999999999999999999999998730 00
Q ss_pred HHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc--cccchhhhhHHHHHHHHHh
Q psy6783 625 KESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEK 702 (1119)
Q Consensus 625 ~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~--~gES~y~~~~~~vi~~l~~ 702 (1119)
-.|+ +..+|+ +.|.+ |+.+++-.++.|++.+++|||.+|. ...+.|.+.+.++++.|.+
T Consensus 100 -------hddK-I~~~A~------~~g~~-----~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~ 160 (501)
T 3sp1_A 100 -------GEDK-VAKTAR------EKGLT-----VYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEE 160 (501)
T ss_dssp ---------------------------CC-----HHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHH
T ss_pred -------CCcH-HHHHHH------HcCCC-----HHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHHH
Confidence 0111 112222 12322 7889999999999999999999994 4678889999999999999
Q ss_pred cCCeeeecCceEE
Q psy6783 703 KGNLSLTKKLGIV 715 (1119)
Q Consensus 703 ~g~~~~~~~~~~v 715 (1119)
+|.++..++.+..
T Consensus 161 kG~aY~~~g~Vyf 173 (501)
T 3sp1_A 161 KKITYFSNGNVYF 173 (501)
T ss_dssp TTCEEEETTEEEE
T ss_pred CCCEEEeCCcEEe
Confidence 9999987665433
No 46
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=97.96 E-value=2.7e-05 Score=94.27 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=92.1
Q ss_pred CEEEEEeecC----cccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhH
Q psy6783 545 DWIVYVTDLG----QGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADL 620 (1119)
Q Consensus 545 d~iIyVv~~~----Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L 620 (1119)
..-+||.+.- -.+|+||+ |++++||.|+|.++..||+|..+..+.|.|.+.-..+
T Consensus 17 ~~~~~v~~~~py~ng~lHiGH~-r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a-------------------- 75 (560)
T 3h99_A 17 AKKILVTCASPYANGSIHLGHM-LEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA-------------------- 75 (560)
T ss_dssp CCEEEEEECCCBTTSCCBHHHH-HHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHH--------------------
T ss_pred CCcEEEeCCCCCCCCCcchhhH-HHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHH--------------------
Confidence 3456776641 25899997 9999999999999999999999998888888652211
Q ss_pred HHHHHHHhhhcCccHHHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc-c--ccchhhhhHHHHH
Q psy6783 621 QAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-R--GESFYQKHMEQLV 697 (1119)
Q Consensus 621 ~~~Y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~-~--gES~y~~~~~~vi 697 (1119)
.+ .|- -|+.+++...+.|++.+++|||.||. . .+..|.+.+.+++
T Consensus 76 ---------------------~~------~g~-----~~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~ 123 (560)
T 3h99_A 76 ---------------------QQ------LGI-----TPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIY 123 (560)
T ss_dssp ---------------------HH------HTS-----CHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHHH
T ss_pred ---------------------HH------hCC-----CHHHHHHHHHHHHHHHHHHcCCCCCCceeCCCHHHHHHHHHHH
Confidence 00 111 14567788889999999999999994 3 3446788999999
Q ss_pred HHHHhcCCeeeecCceEEE
Q psy6783 698 PYLEKKGNLSLTKKLGIVY 716 (1119)
Q Consensus 698 ~~l~~~g~~~~~~~~~~v~ 716 (1119)
+.|.++|+++...+.+...
T Consensus 124 ~~L~~~G~iy~~~~~~~~~ 142 (560)
T 3h99_A 124 SRLKENGFIKNRTISQLYD 142 (560)
T ss_dssp HHHHHTTCEEEEEEEEEEE
T ss_pred HHHHHCCCEEEeeeeEeec
Confidence 9999999999887765543
No 47
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.95 E-value=1.6e-05 Score=94.83 Aligned_cols=111 Identities=12% Similarity=-0.011 Sum_probs=85.6
Q ss_pred HHHHHHhhhhhhhhhcc-cCCCCCcccchhhhccccCCc-hhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCHH
Q psy6783 953 EAQQAVAYGCIKYADLS-HNRNLDYVFSFDKMLDDRGNT-AVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEK 1030 (1119)
Q Consensus 953 ~~~~~v~~~ai~~~~L~-~~r~~~~~Fd~d~~l~~~gnt-~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~~ 1030 (1119)
++.+..|..|++|.+|+ ....++++|+++.+.+..++. ...+.+.++|+.+++++.... .+ ..+.
T Consensus 310 d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~--~~-----------~~~~ 376 (500)
T 2d5b_A 310 ALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEG--RI-----------PEPV 376 (500)
T ss_dssp HHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTT--BC-----------CCCC
T ss_pred HHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC-----------Cchh
Confidence 34467889999999998 789999999999987643211 223677789999988875311 01 0011
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhccc
Q psy6783 1031 EFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1076 (1119)
Q Consensus 1031 E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~ 1076 (1119)
+..|+..|.++++.+.++.++++|+.++.++++++..+|.|++.++
T Consensus 377 ~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k 422 (500)
T 2d5b_A 377 AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKK 422 (500)
T ss_dssp CCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2556778899999999999999999999999999999999998765
No 48
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.88 E-value=0.00011 Score=87.52 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=27.8
Q ss_pred HcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHH
Q psy6783 735 KAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDE 778 (1119)
Q Consensus 735 ~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~ 778 (1119)
.+|+..| .+-|++ +|++.+|.|||.|+|.. .+.++.+.
T Consensus 226 alg~~~P---~~~H~p--lil~~~g~KLSKr~g~~-~l~~~r~~ 263 (492)
T 2cfo_A 226 ALGATPP---NFAHTP--LILNSTGQKLSKRDGVT-SISDFRAM 263 (492)
T ss_dssp HTTCCCC---EEEEEC--CEECSSSSBCCTTSSCC-BHHHHHHT
T ss_pred HcCCCCc---eEEEee--eEECCCCCEecccCCcc-cHHHHHHC
Confidence 3465433 677775 78899999999999986 67666543
No 49
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.85 E-value=2.5e-05 Score=93.24 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=97.1
Q ss_pred hcccCCCCChhhhHHHHHHHhhhhhhhhhcc-cCCCCCcccchhhhcccc-CCchhHHHHHHHHHHHHHHHhCCCcchhh
Q psy6783 939 DKNRHTELTPTELSEAQQAVAYGCIKYADLS-HNRNLDYVFSFDKMLDDR-GNTAVYLLYAYTRIASIARTAGINSEDLR 1016 (1119)
Q Consensus 939 ~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~-~~r~~~~~Fd~d~~l~~~-gnt~~YlQYahARi~SIlrKa~~~~~~l~ 1016 (1119)
+|..+-.++. .++.+..|..|++|.+|+ ....++++|+++.+.+.. .+-..+++|+++|++++++++... .+
T Consensus 297 SKS~GN~i~~---~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~--~~- 370 (497)
T 2csx_A 297 SKTLGNVVDP---YEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGG--EV- 370 (497)
T ss_dssp CTTTTCCCCH---HHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTT--CB-
T ss_pred CCcCCCCCCH---HHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC-
Confidence 3333334443 344467899999999998 789999999999998764 345778999999999999986321 00
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcccc
Q psy6783 1017 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCYC 1077 (1119)
Q Consensus 1017 ~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~V 1077 (1119)
.++.++.|+..|.++++.+.++.+++.++.++.++++++..+|.|++.++-
T Consensus 371 ----------~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~ 421 (497)
T 2csx_A 371 ----------SGARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQP 421 (497)
T ss_dssp ----------CCCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 122346678889999999999999999999999999999999999987753
No 50
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=97.62 E-value=6e-05 Score=95.17 Aligned_cols=119 Identities=7% Similarity=-0.006 Sum_probs=85.2
Q ss_pred hcccCCCCChhhhHHHHHHHhhhhhhhhhc-ccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhhh
Q psy6783 939 DKNRHTELTPTELSEAQQAVAYGCIKYADL-SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRV 1017 (1119)
Q Consensus 939 ~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L-~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~ 1017 (1119)
+|..+-.++. .++.+..|.-|++|..| +....+++.|+++.+-+. .-.+.|+.+++++...... +
T Consensus 652 SKS~GNvv~p---~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--------~~~l~rl~n~~~~~~~~~~---~ 717 (810)
T 1wkb_A 652 SKSKGNVLNF---IDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKL--------RKQIERFYELISQFAEYEV---K 717 (810)
T ss_dssp CTTTTCCCBH---HHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHH--------HHHHHHHHHHHHHHHTCCC---C
T ss_pred hhcCCCcCCH---HHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHHhccC---c
Confidence 4444434443 44556788889999997 688899999999876431 2235799999987621100 0
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHH-HHHHHHHHhhhhccc
Q psy6783 1018 AAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL-YDISTAFSEFYDNCY 1076 (1119)
Q Consensus 1018 ~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL-~~LA~~F~~FY~~~~ 1076 (1119)
. .....+.++.|+..|..+.+.+..+.+++.++..+..+ +.++..+|.|.+.++
T Consensus 718 ----~-~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k 772 (810)
T 1wkb_A 718 ----G-NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE 772 (810)
T ss_dssp ----S-CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred ----c-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 11134667888889999999999999999999998865 699999998776544
No 51
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.22 E-value=0.00013 Score=88.49 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCCceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHHHHHcC
Q psy6783 113 SRVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQG 181 (1119)
Q Consensus 113 ~~~~~~~~~~~il~~g~~~g~~~~~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G 181 (1119)
.+.|+.+++.+++++|..||... +++|.++|+ +|| |||| ||| |+|+|+++..+||- +.|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~RFa-PsP---TG~L--HiG-~artAl~n~l~Ar~--~~G 162 (592)
T 3al0_C 104 GSMFITGAFFDILEVGPKKIRRC-FELVRVRFA-PSP---TGHL--HVG-GARTALFNWMFARK--EGG 162 (592)
T ss_dssp ----------------CCCCCCC-CCCCEEEEC-CCS---SSCC--BHH-HHHHHHHHHHHHHH--HTC
T ss_pred ChHHHHHHHHHHHHcChhhcccC-CCeEEEEEC-CCC---CCCc--cHH-HHHHHHHHHHHHHh--cCC
Confidence 45789999999999999999753 457999999 999 9999 999 99999999999984 444
No 52
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=97.06 E-value=0.00029 Score=84.64 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCceEEEEeeC---CCccccCCcccCCCCchhhHHHHHHHHHHHHHHcCCCCCccc
Q psy6783 115 VYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSS---PNIARKGGFLYPHLPSQIHDILISKAIAEEEKKQGISSSSSS 188 (1119)
Q Consensus 115 ~~~~~~~~~il~~g~~~g~~~~~~~v~vE~vS---ANP~~~tg~l~~hig~~~r~~~~gd~lar~~~~~G~~v~~~~ 188 (1119)
.|..+.+.++++++.. ++ |||+ +|| |||+ ||| |+|+++++|+++|.|++.|++|.-.+
T Consensus 3 ~W~~~~a~~~~~~~~~------~~----~yv~~tgPsP---tG~l--HIG-haR~al~~D~laR~l~~~g~~v~fi~ 63 (523)
T 1irx_A 3 HWADYIADKIIRERGE------KE----KYVVESGITP---SGYV--HVG-NFRELFTAYIVGHALRDKGYEVRHIH 63 (523)
T ss_dssp CHHHHHHHHHHHHSCC------CS----EEEEEEEECC---SSCC--CHH-HHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred chHHHHHHHHHHhcCC------CC----eEEECCCCCC---CCCc--ccC-CcHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4677888888876543 12 6788 899 9999 999 99999999999999999999876543
No 53
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=96.98 E-value=0.0014 Score=81.59 Aligned_cols=124 Identities=9% Similarity=0.020 Sum_probs=90.0
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhccc-CCCCCcccchhhhccc-----cCCchhHHHHHHHHHHHHHHHhCCC
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSH-NRNLDYVFSFDKMLDD-----RGNTAVYLLYAYTRIASIARTAGIN 1011 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~-~r~~~~~Fd~d~~l~~-----~gnt~~YlQYahARi~SIlrKa~~~ 1011 (1119)
++|.++-.++. .++.+..|.-+++|..|+. ...+|++|+|+.+.+. -++-+-+ ..|+.+++++.-..
T Consensus 345 MSKS~GNvV~p---~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~----~~R~~~~~~k~~~~ 417 (722)
T 1rqg_A 345 FSTSRNWAIWV---HEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNF----VHRALTFVNRYFDG 417 (722)
T ss_dssp CBTTTTBSCBH---HHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHH----HHHHHHHHHHHSTT
T ss_pred eeeeCCCcCCH---HHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCC
Confidence 45555555554 3444678888999999997 7889999999987652 2222223 36888888875211
Q ss_pred cchhhhhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhccc
Q psy6783 1012 SEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNCY 1076 (1119)
Q Consensus 1012 ~~~l~~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~~ 1076 (1119)
.++ .... ..+.+..|+..+..+.+.+..+.++++++..+.++++++..+|.|++.++
T Consensus 418 --~~~-----~~~~-~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n~Yi~~~k 474 (722)
T 1rqg_A 418 --VVP-----ERGE-LDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQ 474 (722)
T ss_dssp --BCC-----CCCC-CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --CCC-----Cccc-CCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 010 0011 24667888999999999999999999999999999999999999887654
No 54
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=96.91 E-value=0.0023 Score=81.28 Aligned_cols=103 Identities=16% Similarity=0.092 Sum_probs=79.6
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
.+|+||+ |+.+|+|.|+|.++..||+|..+--+-+.|...-.
T Consensus 47 ~lHiGHa-~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~------------------------------------- 88 (878)
T 2v0c_A 47 DLHMGHL-KNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAEN------------------------------------- 88 (878)
T ss_dssp CCBHHHH-HHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHH-------------------------------------
T ss_pred Ccchhhh-HHHHHHHHHHHHHHhcCCceEeecccCcccHHHHH-------------------------------------
Confidence 5899998 99999999999999999999876666666654311
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc-----cccchhhhhHHHHHHHHHhcCCeeeec
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-----RGESFYQKHMEQLVPYLEKKGNLSLTK 710 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~-----~gES~y~~~~~~vi~~l~~~g~~~~~~ 710 (1119)
.| .+.|.. .+.+++-.++.+++.++||||.||+ ..+..|...+..+...|.++|+++...
T Consensus 89 ----~a------~k~g~~-----~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~ 153 (878)
T 2v0c_A 89 ----AA------LKFGVH-----PKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAK 153 (878)
T ss_dssp ----HH------HHTTCC-----HHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----HH------HHcCCC-----HHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcc
Confidence 00 112322 1356788899999999999999994 356668888999999999999998654
Q ss_pred C
Q psy6783 711 K 711 (1119)
Q Consensus 711 ~ 711 (1119)
.
T Consensus 154 ~ 154 (878)
T 2v0c_A 154 G 154 (878)
T ss_dssp E
T ss_pred e
Confidence 3
No 55
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=96.68 E-value=0.0035 Score=79.42 Aligned_cols=108 Identities=5% Similarity=-0.036 Sum_probs=75.2
Q ss_pred hHHHHHHHhhhhhhhhhccc-CCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCH
Q psy6783 951 LSEAQQAVAYGCIKYADLSH-NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHE 1029 (1119)
Q Consensus 951 ~~~~~~~v~~~ai~~~~L~~-~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~ 1029 (1119)
..++.+.-|-=|++|..|+. ...+++.|+.+.+-.. .=...|+.++++........ ...+... ..+
T Consensus 650 P~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a--------~rfl~rlwn~~~~~~~~~~~----~~~~~~~-l~~ 716 (880)
T 4arc_A 650 PQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGA--------NRFLKRVWKLVYEHTAKGDV----AALNVDA-LTE 716 (880)
T ss_dssp HHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHH--------HHHHHHHHHHHHHHHHTCCC----CCCCSTT-CCH
T ss_pred HHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHHhcccc----ccccccc-CCH
Confidence 34556778888999999988 7889999998775421 12345566665543111000 0001111 246
Q ss_pred HHHHHHHHHHhhHHHHHHHHH-hcchHHHHHHHHHHHHHHHhh
Q psy6783 1030 KEFALAKTLLRMNDVLMLVTR-DLCLHHLCEYLYDISTAFSEF 1071 (1119)
Q Consensus 1030 ~E~~Li~~L~~fpevl~~Aa~-~l~P~~L~~YL~~LA~~F~~F 1071 (1119)
.++.|+..|.+....+..+.+ ++..+.....+++++..+++|
T Consensus 717 ~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~ 759 (880)
T 4arc_A 717 NQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKA 759 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhh
Confidence 778889999999999999998 799999999999999999885
No 56
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=96.44 E-value=0.0075 Score=72.52 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=78.8
Q ss_pred hcccCCCCChhhhHHHHHHHhhhhhhhhhcc-cCCCCCcccchhhhccccCCchh-HHHHHHHHHHHHHHHhCCCcchhh
Q psy6783 939 DKNRHTELTPTELSEAQQAVAYGCIKYADLS-HNRNLDYVFSFDKMLDDRGNTAV-YLLYAYTRIASIARTAGINSEDLR 1016 (1119)
Q Consensus 939 ~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~-~~r~~~~~Fd~d~~l~~~gnt~~-YlQYahARi~SIlrKa~~~~~~l~ 1016 (1119)
+|..+-.++.. ++.+..|.=+++|..++ ....+|+.|+++.+.+.-.+.-. -+--...|+.+...+... .
T Consensus 325 SKSlGNvi~p~---~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~---~-- 396 (542)
T 3u1f_A 325 SKSLGNVFDPV---EKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNG---E-- 396 (542)
T ss_dssp BTTTTBCCCHH---HHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTS---B--
T ss_pred ccccCCCCChh---HHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccC---C--
Confidence 44444455543 34466788899999997 55789999999877542100000 011112233332221110 0
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhcc
Q psy6783 1017 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFSEFYDNC 1075 (1119)
Q Consensus 1017 ~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~~F~~FY~~~ 1075 (1119)
.....-..+.+..++..+....+.+..+.+++..+..++-+++++...|.|++..
T Consensus 397 ----~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~~ 451 (542)
T 3u1f_A 397 ----WPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDM 451 (542)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0111123456777888899999999999999999999999999999999988654
No 57
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=96.13 E-value=0.0019 Score=76.65 Aligned_cols=94 Identities=21% Similarity=0.175 Sum_probs=60.0
Q ss_pred HHcCCCCCCCCCceeeeeeEEECCCCcccccccCCeeeHHHHHHHHH--HHHHHHHHhccCCCCCChhhhHHHHHHhhhc
Q psy6783 734 KKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGL--RRSLDKLKDKNRHTELTPTELSEAQQAVAYG 811 (1119)
Q Consensus 734 ~~~g~~~~~~~~~~h~~fg~V~~~~~~~~str~G~~v~l~~ll~~~~--~~~~~~l~~~~~~~~~~~~~~~~~a~~v~~g 811 (1119)
+.+|+..| .+-|+++ +++.+|+|||+|+|.. .+.++++++. +.....+...+-... ...+.... -+
T Consensus 240 ~aLG~~~p---~~~H~pl--il~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~s~~-~~~e~~~~-----~e 307 (481)
T 2o5r_A 240 EAFEKAPP---VFAHVST--ILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLGWSHP-EGKELLTL-----EE 307 (481)
T ss_dssp HHTTCCCC---EEEEECC--EECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSSBCCT-TCCCCCCH-----HH
T ss_pred HHcCCCCC---eEEEEee--EECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCC-cccccCCH-----HH
Confidence 44566443 6888765 7888999999999987 8888887631 111222322221110 00011000 14
Q ss_pred eeeeecccCCCCCcccccccccccccCC
Q psy6783 812 CIKYADLSHNRNLDYVFSFDKMLDDRGN 839 (1119)
Q Consensus 812 aI~~~dl~~~r~~~y~F~~~~~~~~~g~ 839 (1119)
+|.+.|++..+....+|||+++..++|.
T Consensus 308 ~i~~f~l~~~~~~~~~fd~~kl~~~n~~ 335 (481)
T 2o5r_A 308 LISSFSLDRLSPNPAIFDPQKLKWMNGY 335 (481)
T ss_dssp HHHHCCGGGBCSSCEECCHHHHHHHHHH
T ss_pred HHHhCChhhCCccCcccChHHhhhhCHH
Confidence 6788899988999999999999888665
No 58
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=96.10 E-value=0.0094 Score=75.34 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=84.0
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccH
Q psy6783 556 GVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDE 635 (1119)
Q Consensus 556 ~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~ 635 (1119)
.+|+||+ |+.+|+|.|+|..+-.|++|..+--.-+-|...=.. +.+.....+
T Consensus 52 ~lHiGH~-~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~---------------------------a~k~l~~~~ 103 (821)
T 1ile_A 52 LPHVGHA-QARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELE---------------------------VEKKLGLKS 103 (821)
T ss_dssp CCCTTHH-HHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHH---------------------------HHHHTTCCS
T ss_pred CCchhhh-HhHHHHHHHHHHHHhcCCcccccccccCCCchHHHH---------------------------HHHHhcccc
Confidence 5899998 999999999999999999998776555555542111 111111111
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHhcccccc-----cccchhhhhHHHHHHHHHhcCCeeeec
Q psy6783 636 IFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTE-----RGESFYQKHMEQLVPYLEKKGNLSLTK 710 (1119)
Q Consensus 636 ~~~~~a~~~~~~le~gd~e~~~lW~~~rd~Si~~~~~~Y~rL~V~Fd~-----~gES~y~~~~~~vi~~l~~~g~~~~~~ 710 (1119)
.+ ....+ |+++-++.++.+++-.++.+++.++|||+.+|+ .-...|......+..+|.++|+++...
T Consensus 104 --~~----~~~~~--g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~ 175 (821)
T 1ile_A 104 --KR----EIEAY--GIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDH 175 (821)
T ss_dssp --HH----HHHHH--CHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred --cc----hHhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecC
Confidence 00 00111 667778888888888999999999999966553 234457778888999999999987653
No 59
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=95.69 E-value=0.016 Score=69.34 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcEEEEEeeCCCCCCCccccccchhcHHHHHHH
Q psy6783 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISR 365 (1119)
Q Consensus 311 ~~~~~~l~~il~~g~~~~~~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLar 365 (1119)
.|+...+.+-+..|.. ++|+.=| .|.|||+|||||+|++++-..+||
T Consensus 9 ~fi~~~i~~dl~~~~~-------~~v~tRF-aPSPtG~LHIGhaRtal~n~l~Ar 55 (553)
T 1qtq_A 9 NFIRQIIDEDLASGKH-------TTVHTRF-PPEPNGYLHIGHAKSICLNFGIAQ 55 (553)
T ss_dssp CHHHHHHHHHHHHTSC-------SSCEEEE-CCCTTSCCBHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHhhcCCc-------CceEEEe-CCCCCCCccHHHHHHHHHHHHHHH
Confidence 3566777666665532 2355555 899999999999999998666665
No 60
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=95.35 E-value=0.017 Score=72.32 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCcEEEEEeeCCCCCCCccccccchhcHHHHHHH
Q psy6783 311 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISR 365 (1119)
Q Consensus 311 ~~~~~~l~~il~~g~~~~~~~~~kkV~VEfsSpNptkpLHVGHlRsaiiGDsLar 365 (1119)
.|+...+..-+..|.. ++|+.=| .|.|||+|||||+|++++-..+||
T Consensus 49 ~fi~~ii~~dl~~g~~-------~~v~tRF-aPSPtG~LHIGhARtAL~n~l~Ar 95 (851)
T 2hz7_A 49 NFITEIIERDLEAGKY-------PRVVTRF-PPDPSGYAHLGHVFASLLDFNTAR 95 (851)
T ss_dssp CHHHHHHHHHHHTTSC-------SSCEEEE-CCCSSSCCBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCc-------CceEEEe-CCCCCCCccHHHHHHHHHHHHHHH
Confidence 4677777666665431 2354444 899999999999999998555555
No 61
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=95.34 E-value=0.0095 Score=66.50 Aligned_cols=45 Identities=7% Similarity=0.066 Sum_probs=40.0
Q ss_pred HhhHHHHHHHHHHhcccccc--cccchhhhhHHHHHHHHHhcCCeee
Q psy6783 664 DVSRRDFQKIYDRLNVTLTE--RGESFYQKHMEQLVPYLEKKGNLSL 708 (1119)
Q Consensus 664 d~Si~~~~~~Y~rL~V~Fd~--~gES~y~~~~~~vi~~l~~~g~~~~ 708 (1119)
.-.++.+.+..++|||.+|. ...|++.+...++++.|.++|.++.
T Consensus 54 ~~~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 54 PGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp TTHHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCccc
Confidence 45677888999999999995 8999999999999999999999986
No 62
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.22 E-value=0.025 Score=67.79 Aligned_cols=39 Identities=15% Similarity=0.009 Sum_probs=27.8
Q ss_pred HHHHHhhcCcEEec-cchhhhhHHHHHHHHHHHHCCCeEe
Q psy6783 461 FQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGLLEL 499 (1119)
Q Consensus 461 ~~~~y~~l~i~f~~-~geS~y~~~v~~vi~~L~~kG~~~e 499 (1119)
+.+....||+..++ .-.|.|-+...+.+++|.++|++|.
T Consensus 151 I~edL~wLGl~wd~~~~qSdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 151 IPADLEWLGVEWDETVIQSDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HHHHHHHHTCCCSEEEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCCCcccccCHHHHHHHHHHHHHcCCcee
Confidence 34445566664442 2357777888899999999999996
No 63
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=94.08 E-value=0.15 Score=64.75 Aligned_cols=120 Identities=14% Similarity=0.186 Sum_probs=81.8
Q ss_pred hhcccCCCCChhhhHHHHHHHhhhhhhhhhccc-CCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhh
Q psy6783 938 KDKNRHTELTPTELSEAQQAVAYGCIKYADLSH-NRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLR 1016 (1119)
Q Consensus 938 ~~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~-~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~ 1016 (1119)
++|..+-.++. .++.+..|.=|++|..++. ...+++.|+++.+.... | .+-|+.++.|-+........
T Consensus 529 MSKSlGNvIdP---~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~-~-------f~nkl~N~~rf~~~~~~~~~ 597 (862)
T 1gax_A 529 MSKSKGNVIDP---LEMVERYGADALRFALIYLATGGQDIRLDLRWLEMAR-N-------FANKLYNAARFVLLSREGFQ 597 (862)
T ss_dssp CCTTTTCCCCH---HHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHH-H-------HHHHHHHHHHHHHHHSSSCC
T ss_pred ccccCCCCCCH---HHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHH-H-------HHHHHHHHHHHHHhcccCCC
Confidence 34444445554 3445678888999999985 88999999998876421 1 23355555543311000000
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHH-HHHHhhhh
Q psy6783 1017 VAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIS-TAFSEFYD 1073 (1119)
Q Consensus 1017 ~~~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA-~~F~~FY~ 1073 (1119)
+ ...-..+.++.++..|......+..+.++++.+..+..+++++ ..|+.||-
T Consensus 598 ~-----~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yi 650 (862)
T 1gax_A 598 A-----KEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYL 650 (862)
T ss_dssp C-----CBCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHH
T ss_pred C-----ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHH
Confidence 0 0011346678888999999999999999999999999999999 57888884
No 64
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=93.77 E-value=0.08 Score=67.60 Aligned_cols=156 Identities=12% Similarity=0.059 Sum_probs=105.1
Q ss_pred hcccCCCCChhhhHHHHHHHhhhhhhhhhcccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhhhh
Q psy6783 939 DKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVA 1018 (1119)
Q Consensus 939 ~k~~~~~~~~~e~~~~~~~v~~~ai~~~~L~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~~ 1018 (1119)
+|..+-.++. .++.+..|.-|++|..|+....+++.|+++.+... .=+|.|+++.+|..-.....+.+.
T Consensus 597 SKSlGNvV~P---~dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~--------~~~~~kl~n~~r~~l~nl~~~~~~ 665 (917)
T 1ffy_A 597 SKSLGNVIVP---DQVVKQKGADIARLWVSSTDYLADVRISDEILKQT--------SDDYRKIRNTLRFMLGNINDFNPD 665 (917)
T ss_dssp CSSSSCCCCH---HHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHH--------HHHHHHHHHHHHHHHHTSTTCCHH
T ss_pred ccccCCcCCh---HHHHHhCCHHHHHHHHhccCCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHHhhhhccCcc
Confidence 4444444554 44556788889999999999999999999887642 225788999888752110000000
Q ss_pred -ccCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHH-HHHhhhhcc---cccccCCccchhhhHhHH
Q psy6783 1019 -AQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDIST-AFSEFYDNC---YCIEKDAEGKIKTVHTGR 1093 (1119)
Q Consensus 1019 -~~~~~~~L~~~~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL~~LA~-~F~~FY~~~---~VL~~~~~~~~~~~~~aR 1093 (1119)
....... ..+.++.|+..|.++.+.+..+.++++++..+.++++++. .|+.||-+. +......+ ...|
T Consensus 666 ~~~v~~~~-l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~------~~~r 738 (917)
T 1ffy_A 666 TDSIPESE-LLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRD------SHIR 738 (917)
T ss_dssp HHCCCGGG-SCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTT------CHHH
T ss_pred cccCCccc-cCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCC------cHHH
Confidence 0011111 2567888889999999999999999999999999999998 799999532 33322111 1245
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q psy6783 1094 LLLAEATAKVMKKCFDILN 1112 (1119)
Q Consensus 1094 L~L~~at~~VL~~gL~LLG 1112 (1119)
.....+...+|+..+.||.
T Consensus 739 ~~~~~~l~~~l~~l~~lLa 757 (917)
T 1ffy_A 739 RSMQTVLYQILVDMTKLLA 757 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5555666677777777774
No 65
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=93.40 E-value=0.18 Score=64.79 Aligned_cols=109 Identities=6% Similarity=0.024 Sum_probs=71.3
Q ss_pred hHHHHHHHhhhhhhhhhc-ccCCCCCcccchhhhccccCCchhHHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCCCCH
Q psy6783 951 LSEAQQAVAYGCIKYADL-SHNRNLDYVFSFDKMLDDRGNTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHE 1029 (1119)
Q Consensus 951 ~~~~~~~v~~~ai~~~~L-~~~r~~~~~Fd~d~~l~~~gnt~~YlQYahARi~SIlrKa~~~~~~l~~~~~~~~~~L~~~ 1029 (1119)
..++.+..|.=|++|..| +....+++.|+.+.+-+. .-...|+.+.+++...... ..... ..+
T Consensus 661 p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~--------~~~l~rl~n~~~~~~~~~~-------~~~~~-~~~ 724 (967)
T 1wz2_A 661 FIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKL--------RKQIERFYELISQFAEYEV-------KGNVE-LKD 724 (967)
T ss_dssp HHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHH--------HHHHHHHHHHHHHHHSSCC-------CCCCC-CCH
T ss_pred HHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHH--------HHHHHHHHHHHHHHhcCCC-------CCccc-CCH
Confidence 344556778889999997 678899999998865431 1122466666665411100 00111 235
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcchHHHHHHH-HHHHHHHHhhhhcc
Q psy6783 1030 KEFALAKTLLRMNDVLMLVTRDLCLHHLCEYL-YDISTAFSEFYDNC 1075 (1119)
Q Consensus 1030 ~E~~Li~~L~~fpevl~~Aa~~l~P~~L~~YL-~~LA~~F~~FY~~~ 1075 (1119)
.++.++..|......+..+.+++..+..+..+ +.+...+|.|.+.+
T Consensus 725 ~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~ 771 (967)
T 1wz2_A 725 IDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRT 771 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56667777888888888888999998887754 58888887554543
No 66
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=68.89 E-value=1.3 Score=50.05 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=29.3
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcC-CcEEEecccCCc
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLG-HDVVRLNHVGDW 383 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~G-y~V~renyInD~ 383 (1119)
|+.--|||+||+||+.+++ -.+.++ ...| |+| ...|+||
T Consensus 5 y~G~~PTg~lHlGh~~g~l--~~~~~l-Q~~G~~~~--~~~IaD~ 44 (337)
T 2el7_A 5 LSGIQPSGEIHIGNYLGAI--KQWVAI-GEKLGRDA--FFCIVDY 44 (337)
T ss_dssp EEEECSCSCCBHHHHHTHH--HHHHHH-HHHHGGGE--EEEECGG
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHHH-HhcCCCCE--EEEEeCc
Confidence 5677899999999988774 333333 4568 987 7889996
No 67
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=62.38 E-value=2.8 Score=50.07 Aligned_cols=57 Identities=21% Similarity=0.120 Sum_probs=36.3
Q ss_pred eEEEecCCCcccchhhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecc
Q psy6783 516 MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNH 588 (1119)
Q Consensus 516 ~VL~KSDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~Ny 588 (1119)
.||.|+||.||| |+|...+=.. .|.+.+|== ..|+.. |-.= .-||+++||.+-.--|
T Consensus 206 ~vi~r~dg~PtY---~fA~vVDD~~-mgITHViRG-----~D~l~s----Tp~q---~~l~~alg~~~P~y~H 262 (512)
T 4gri_A 206 PVILKSDGLPTY---HLANVVDDYL-MKITHVLRA-----QEWVSS----GPLH---VLLYKAFKWKPPIYCH 262 (512)
T ss_dssp CEEECTTSCBCH---HHHHHHHHHH-TTCSEEEEE-----GGGGGG----HHHH---HHHHHHHTCCCCEEEE
T ss_pred eEEEecCCcccc---cccceecccc-cCCceeccc-----cccccc----cHHH---HHHHHHcCCCCCeEEe
Confidence 699999999999 7787776543 466666543 223321 2111 2588899998755444
No 68
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=60.61 E-value=5.2 Score=47.98 Aligned_cols=48 Identities=21% Similarity=0.440 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 114 RVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 114 ~~~~~~~~~~il~~g~~~g~~~~~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
..|+.+++.+-|..|.. + +|..=| -+.| ||+| ||| |+|.|++-..+||
T Consensus 8 ~~fi~~~i~~dl~~~~~-~------~v~tRF-aPSP---tG~L--HIG-haRtal~n~l~Ar 55 (553)
T 1qtq_A 8 TNFIRQIIDEDLASGKH-T------TVHTRF-PPEP---NGYL--HIG-HAKSICLNFGIAQ 55 (553)
T ss_dssp CCHHHHHHHHHHHHTSC-S------SCEEEE-CCCT---TSCC--BHH-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHhhcCCc-C------ceEEEe-CCCC---CCCc--cHH-HHHHHHHHHHHHH
Confidence 36788888888886642 2 244444 4689 9999 999 9999999999987
No 69
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=60.21 E-value=3.2 Score=47.86 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=28.7
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchh
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~ 385 (1119)
|+.--|||.||+||++.++. +...++ .||+| ...|+||=.
T Consensus 43 y~G~~PTG~LHlG~~~~al~---~~~~~q-~g~~~--ii~I~D~ha 82 (394)
T 2dlc_X 43 YWGTAPTGRPHCGYFVPMTK---LADFLK-AGCEV--TVLLADLHA 82 (394)
T ss_dssp EEEECCCSCCBGGGHHHHHH---HHHHHH-TTCEE--EEEECHHHH
T ss_pred EEEeCCCCCccHHHHHHHHH---HHHHHH-cCCcE--EEEEcCCcc
Confidence 56668899999999877765 333343 78875 678888543
No 70
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=59.07 E-value=3.1 Score=46.67 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=22.1
Q ss_pred eeeeEEECCCCcccccccCCeeeHHHH
Q psy6783 749 VGFGVVLGEDRKKFKTRSGDTVKLSEL 775 (1119)
Q Consensus 749 ~~fg~V~~~~~~~~str~G~~v~l~~l 775 (1119)
+..+++.+.+|+|||.+.|+.|.++|.
T Consensus 202 l~~pll~~l~G~KMSKS~~n~I~l~d~ 228 (323)
T 2cyb_A 202 LHTPILVGLDGQKMSSSKGNYISVRDP 228 (323)
T ss_dssp EEECCCBCTTSSBCCTTTTCSCBTTCC
T ss_pred EecCcccCCCCCcccCCcCceeCCCCC
Confidence 334577888899999999999999875
No 71
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=56.40 E-value=4.1 Score=46.59 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=28.3
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchh
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~ 385 (1119)
|+.--|||.||+||++.++. +...++ .||++ ...|+||=.
T Consensus 39 y~G~~PTG~lHlG~~~~~l~---~~~~~q-~g~~~--i~~I~D~ha 78 (372)
T 1n3l_A 39 YWGTATTGKPHVAYFVPMSK---IADFLK-AGCEV--TILFADLHA 78 (372)
T ss_dssp EEEECCSSCCBGGGHHHHHH---HHHHHH-TTCEE--EEEECHHHH
T ss_pred EeCcCCCCcccHHHHHHHHH---HHHHHH-CCCCE--EEEEcCCce
Confidence 44445999999999877766 444454 78875 677888543
No 72
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=52.05 E-value=3.3 Score=46.55 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=28.2
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCc
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~ 383 (1119)
|+.--|||.||+||..+++ --+.++ .. ||+| .+.|+||
T Consensus 5 ysG~~PTG~lHlGn~vg~l--~~~~~l-Q~-g~~~--~~~IaD~ 42 (328)
T 1i6k_A 5 FSGIQPSGVITIGNYIGAL--RQFVEL-QH-EYNC--YFCIVDQ 42 (328)
T ss_dssp EEEECCCSCCBHHHHHHTH--HHHHHH-TT-TSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHHH-Hc-CCcE--EEEEeCc
Confidence 6777899999999988776 233333 44 8886 7888885
No 73
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=51.36 E-value=5.5 Score=47.21 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=39.1
Q ss_pred eEEEecCCCcccchhhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeeccc
Q psy6783 516 MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHV 589 (1119)
Q Consensus 516 ~VL~KSDGt~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~Nyl 589 (1119)
.||.|+||.|||. +|...+-.. .+.+.+|- |. .|+.. | ---..||+++||.+-.--|+
T Consensus 197 ~Vl~R~DG~ptY~---lA~vVDD~~-mgIThViR--G~---D~l~~----t---prq~~l~~aLG~~~P~f~Hl 254 (490)
T 4g6z_A 197 LVVARPDGTPMYN---FCVVVDDLD-MGITHVIR--GD---DHVNN----T---PRQINILRALGGEVPVYAHL 254 (490)
T ss_dssp CEEECTTSCBCHH---HHHHHHHHH-TTCCEEEE--EG---GGGGG----H---HHHHHHHHHTTCCCCEEEEE
T ss_pred eEEEeeCCCccch---hHHHHHHHh-cCCCEEEe--cc---ccccC----h---HHHHHHHHHcCCCCCeEEEe
Confidence 7999999999995 567766653 57888875 53 34332 0 11236899999987655554
No 74
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=50.92 E-value=5.6 Score=44.99 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=29.6
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchh
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~ 385 (1119)
|+..-|||.||+||+.+++. -.+-|...||+|. +.|+||=.
T Consensus 16 ~~G~~PTG~lHLGn~~g~l~---~~~~lQ~~G~~~~--~~IaD~ha 56 (340)
T 2g36_A 16 LSGMRPTGKLHIGHLVGALE---NWVKLQEEGNECF--YFVADWHA 56 (340)
T ss_dssp EEEECCCSSCBHHHHHTHHH---HHHHHHHTTCEEE--EEECHHHH
T ss_pred EEeeCCCCcccHHhHHHHHH---HHHHHHHCCCCEE--EEEeccee
Confidence 78899999999999887642 2223556798864 56888543
No 75
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=50.74 E-value=10 Score=47.77 Aligned_cols=48 Identities=25% Similarity=0.448 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCceEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 114 RVYAGEQMKDIIVNGVQPPTLNKKLRVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 114 ~~~~~~~~~~il~~g~~~g~~~~~~~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
..|+.+++.+-|..|.. + +|..=| -+.| ||+| ||| |+|.|++-..+||
T Consensus 48 ~~fi~~ii~~dl~~g~~-~------~v~tRF-aPSP---tG~L--HIG-hARtAL~n~l~Ar 95 (851)
T 2hz7_A 48 PNFITEIIERDLEAGKY-P------RVVTRF-PPDP---SGYA--HLG-HVFASLLDFNTAR 95 (851)
T ss_dssp CCHHHHHHHHHHHTTSC-S------SCEEEE-CCCS---SSCC--BHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCc-C------ceEEEe-CCCC---CCCc--cHH-HHHHHHHHHHHHH
Confidence 47888888888875532 1 244434 4689 9999 999 9999999888887
No 76
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=48.26 E-value=6.6 Score=46.31 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=21.5
Q ss_pred CCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 147 PNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 147 ANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
+.| ||+| ||| |+|.|++.-..||
T Consensus 8 PsP---tG~L--HiG-~~rtal~n~l~Ar 30 (468)
T 1j09_A 8 PSP---TGDP--HVG-TAYIALFNYAWAR 30 (468)
T ss_dssp CCC---SSSC--BHH-HHHHHHHHHHHHH
T ss_pred CCC---CCCc--cHH-HHHHHHHHHHHHH
Confidence 589 9999 999 9999999999987
No 77
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=46.74 E-value=7.2 Score=46.81 Aligned_cols=30 Identities=27% Similarity=0.528 Sum_probs=25.3
Q ss_pred eEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 139 RVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 139 ~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
+|..=| -+.| ||+| ||| |+|+|++-..+||
T Consensus 96 ~v~tRF-aPsP---tG~L--HIG-haRtal~n~l~Ar 125 (553)
T 3aii_A 96 EVVLRF-APNP---SGPL--HIG-HARAAILNHEYAR 125 (553)
T ss_dssp CCEEEE-CCCS---SSSC--BHH-HHHHHHHHHHHHH
T ss_pred ceEEEe-CCCC---CCCc--cHH-HHHHHHHHHHHHH
Confidence 466666 4699 9999 999 9999999888887
No 78
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=45.68 E-value=3.8 Score=46.50 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=27.2
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchh
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~ 385 (1119)
|+.--|||+||+||+.+++ --..+ |+.. |+| .+.|+||=.
T Consensus 26 ysG~~PTG~lHLGn~~g~l--~~~~~-lQ~~-~~~--~~~IaD~ha 65 (351)
T 1yi8_B 26 LTGDRPTGALHLGHLAGSL--QNRVR-LQDE-AEL--FVLLADVQA 65 (351)
T ss_dssp EEEECCSSCCBHHHHHHTH--HHHHH-HTSS-SEE--EEEECHHHH
T ss_pred EEeeCCCCCccHHHHHHHH--HHHHH-HHHh-CCe--EEEEecchh
Confidence 7788899999999987764 22222 3333 665 788898643
No 79
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=44.94 E-value=8 Score=45.85 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=26.1
Q ss_pred eEEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHHH
Q psy6783 139 RVLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAEE 176 (1119)
Q Consensus 139 ~v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar~ 176 (1119)
+|.+=| -+.| ||+| ||| |+|.|++.-..||-
T Consensus 25 ~v~~RF-APsP---tG~L--HiG-~~rtal~n~l~Ar~ 55 (488)
T 3afh_A 25 LVRVRF-APSP---TGHL--HVG-GARTALFNWMFARK 55 (488)
T ss_dssp CCEEEE-CCCC---SSSC--BHH-HHHHHHHHHHHHHH
T ss_pred CceEEE-CCCC---CCCc--cHH-HHHHHHHHHHHHHH
Confidence 466666 3799 9999 999 99999999998874
No 80
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=43.84 E-value=8.5 Score=45.72 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=25.1
Q ss_pred EEEEeeCCCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 140 VLVDFSSPNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 140 v~vE~vSANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
|.+=|- +.| ||+| ||| |+|.|++.-..||
T Consensus 7 vr~RFA-PsP---TG~L--HiG-~~rtAL~n~l~Ar 35 (498)
T 2ja2_A 7 VRVRFC-PSP---TGTP--HVG-LVRTALFNWAYAR 35 (498)
T ss_dssp CEEEEC-CCS---SSSC--BHH-HHHHHHHHHHHHH
T ss_pred eeEEEC-cCC---CCCc--cHH-HHHHHHHHHHHHH
Confidence 555553 689 9999 999 9999999999997
No 81
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=40.72 E-value=16 Score=42.32 Aligned_cols=42 Identities=29% Similarity=0.460 Sum_probs=28.9
Q ss_pred eeCCCCCCC-ccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHH
Q psy6783 340 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387 (1119)
Q Consensus 340 fsSpNptkp-LHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi 387 (1119)
|+.--|||+ ||+||+= ++ -.+ +-|...||++ ...|+||=..+
T Consensus 34 y~G~dPTg~sLHlGh~v-~l--~~l-~~lQ~~G~~~--i~lIgd~ta~i 76 (419)
T 2ts1_A 34 YCGFDPTADSLHIGHLA-TI--LTM-RRFQQAGHRP--IALVGGATGLI 76 (419)
T ss_dssp EEEECCSSSSCBGGGHH-HH--HHH-HHHHHTTCEE--EEEECTTGGGT
T ss_pred EEeeCCCCCCccHHHHH-HH--HHH-HHHHHCCCcE--EEEEcCceeEe
Confidence 788899999 9999954 22 223 3344568875 67789975544
No 82
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=39.68 E-value=10 Score=43.18 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=27.2
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchh
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~ 385 (1119)
|+.--|||+||+|| ..++. .+.++ ...||+| ...|+||=.
T Consensus 39 y~G~~PTg~lHlG~-l~~l~--~~~~l-Q~~G~~~--~~~iaD~~a 78 (364)
T 2cya_A 39 YIGYEPSGVAHIGW-LVWMY--KVKDL-VEAGVDF--SVLEATWHA 78 (364)
T ss_dssp EEEECCCSSCBTHH-HHHHH--HHHHH-HHTTCEE--EEEECHHHH
T ss_pred EeccCCCCCccHhH-HHHHH--HHHHH-HHCCCCE--EEEEeCcch
Confidence 66778999999999 55442 23333 3458875 677888533
No 83
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=39.63 E-value=11 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.7
Q ss_pred CCccccCCcccCCCCchhhHHHHHHHHHH
Q psy6783 147 PNIARKGGFLYPHLPSQIHDILISKAIAE 175 (1119)
Q Consensus 147 ANP~~~tg~l~~hig~~~r~~~~gd~lar 175 (1119)
+.| ||+| ||| |+|.|++--..||
T Consensus 8 PSP---tG~l--HiG-~artal~n~l~Ar 30 (492)
T 2cfo_A 8 PSP---TGNL--HIG-TARTAVFNWLYAR 30 (492)
T ss_dssp CCT---TSCC--BHH-HHHHHHHHHHHHH
T ss_pred CCC---CCCc--cHH-HHHHHHHHHHHHH
Confidence 578 9999 999 9999999877776
No 84
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=39.12 E-value=8.7 Score=42.86 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=26.6
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCc
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~ 383 (1119)
|+.--|||+||+|| ..++. .+.+ |...||+| ...|+||
T Consensus 32 y~G~~PTg~lHlGh-l~~l~--~~~~-lQ~~g~~~--~~~i~D~ 69 (314)
T 2zp1_A 32 YIGFEPSGKIHLGH-YLQIK--KMID-LQNAGFDI--IILLADL 69 (314)
T ss_dssp EEEECCCSSCBHHH-HHHHH--HHHH-HHHTTEEE--EEEECHH
T ss_pred EEccCCCCCcchhh-HHHHH--HHHH-HHHCCCCE--EEEEecc
Confidence 77888999999999 66653 2333 33457765 6778775
No 85
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=37.88 E-value=16 Score=40.88 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=29.1
Q ss_pred eeCCCCCCC-ccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHH
Q psy6783 340 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387 (1119)
Q Consensus 340 fsSpNptkp-LHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi 387 (1119)
|+.--|||+ ||+||+= ++ ..+ +-|...||++ .+.|+||=..+
T Consensus 37 y~G~~PTg~slHlGh~l-~l--~~~-~~lQ~~g~~~--~~~i~D~~a~~ 79 (322)
T 2yxn_A 37 VCGFDPTADSLHLGHLV-PL--LCL-KRFQQAGHKP--VALVGGATGLI 79 (322)
T ss_dssp EEEECCSSSSCBHHHHH-HH--HHH-HHHHHTTCEE--EEEECTTGGGT
T ss_pred EEeecCCCCcccHHHHH-HH--HHH-HHHHHcCCcE--EEEEccceeee
Confidence 889999999 9999954 22 123 3344568875 78899975443
No 86
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=36.24 E-value=17 Score=42.18 Aligned_cols=42 Identities=19% Similarity=0.371 Sum_probs=28.9
Q ss_pred eeCCCCCCC-ccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHH
Q psy6783 340 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387 (1119)
Q Consensus 340 fsSpNptkp-LHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi 387 (1119)
|+.--|||+ ||+||+= ++ -.+. -|...||+| ...|+||=..+
T Consensus 36 y~G~dPTg~sLHlGh~v-~l--~~~~-~lQ~~G~~~--~~lIgd~ta~i 78 (420)
T 1jil_A 36 YCGADPTADSLHIGHLL-PF--LTLR-RFQEHGHRP--IVLIGGGTGMI 78 (420)
T ss_dssp EEEECCSSSSCBHHHHH-HH--HHHH-HHHHTTCEE--EEEECTTGGGT
T ss_pred EEeeCCCCCCccHHHHH-HH--HHHH-HHHHCCCcE--EEEEcCceeEe
Confidence 888999999 9999954 22 2233 344568865 67889975544
No 87
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=36.20 E-value=6.4 Score=44.15 Aligned_cols=38 Identities=11% Similarity=0.305 Sum_probs=27.6
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCc
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~ 383 (1119)
|+.--|||.||+||.-+++. .+.++-+ ||++ .+.|+||
T Consensus 7 ysG~~PTg~lHlG~~lg~l~--~~~~lQ~--g~~~--~~~iaD~ 44 (322)
T 3tzl_A 7 LTGLQPSGDLHIGNYFGAIK--QMVDAQE--KSQM--FMFIANY 44 (322)
T ss_dssp EEEECCSSCCBHHHHHHTHH--HHHHTTT--TSCC--EEEECHH
T ss_pred EEccCCCccccHHHHHHHHH--HHHHHhc--CCCE--EEEEecC
Confidence 66778999999999776653 2444433 8876 6778886
No 88
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=35.88 E-value=21 Score=41.16 Aligned_cols=42 Identities=17% Similarity=0.365 Sum_probs=29.0
Q ss_pred eeCCCCCCC-ccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHH
Q psy6783 340 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387 (1119)
Q Consensus 340 fsSpNptkp-LHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi 387 (1119)
|+.--|||+ |||||+= ++. .+.++- ..||+| .+.|+||=..+
T Consensus 68 y~G~dPTg~sLHlGhlv-~l~--~l~~lQ-~~G~~~--~~lIgD~hali 110 (392)
T 1y42_X 68 YVGIDPTAPSLHVGHLL-PLM--PLFWMY-LEGYKA--FTLIGGSTAKI 110 (392)
T ss_dssp EEEECCCSSSCBGGGHH-HHH--HHHHHH-HHTCEE--EEEECTTTTTT
T ss_pred EEeecCCCCCccHHHHH-HHH--HHHHHH-HcCCcE--EEEEcCceeEe
Confidence 888899999 9999965 322 344444 458875 67788864433
No 89
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=35.27 E-value=14 Score=42.10 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=27.4
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCc
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~ 383 (1119)
|+.--|||+||+||.= |=.-.+.+.-.||+| .+.|.||
T Consensus 74 ~sG~~PTG~lHLGhyv----~~~~~~~lq~~~~~~--~~~IaD~ 111 (372)
T 3a04_A 74 LTGFMPSGKFHFGHKL----TVDQLIYLQKNGFKV--FVAIADA 111 (372)
T ss_dssp EEEECCCSCCBHHHHH----HHHHHHHHHHTTCEE--EEEECHH
T ss_pred EeCcCCCcHhHHHHHH----HHHHHHHHHhCCCeE--EEEEecc
Confidence 6788999999999953 433344555568887 4668885
No 90
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=34.47 E-value=8.4 Score=43.67 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=27.7
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCc
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~ 383 (1119)
|+.--|||.||+||..+++ --..+ |+. ||+| .+.|+||
T Consensus 8 ~sG~~PTG~lHLGn~vg~l--~~~~~-lQ~-~~~~--~~~IaD~ 45 (348)
T 2yy5_A 8 LTGIQASGKQHLGNYLGVM--QSLIE-LQE-QCQL--FVFVADL 45 (348)
T ss_dssp EEEECCCTTCBHHHHHHTG--GGHHH-HHH-HSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHh-CCcE--EEEEcCh
Confidence 6778899999999988777 22222 444 7775 6888885
No 91
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=32.62 E-value=2.8e+02 Score=32.08 Aligned_cols=219 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred CcccchhhHHHHHHHhhhhCCCEEEEEeecC-cccchhhhhhhhhhHHHHHHHHHH-cCCceeeecccCcchhhHHHHHH
Q psy6783 524 GFTYDTSDLAAIRQRIEEEKADWIVYVTDLG-QGVHFRLLEESTIIGDTISRLLEY-LGHDVVRLNHVGDWGTQFGMLIA 601 (1119)
Q Consensus 524 t~tY~t~DIAy~~~R~~~~~~d~iIyVv~~~-Q~~H~~~~~RStIIG~~l~~l~~~-~G~~V~r~NylGDwG~QfG~l~~ 601 (1119)
...+-.+|.-....+++....=++.-=.+-. -++|+||+ +|=...|.|.. .||+++- .+|||-...|
T Consensus 82 G~i~~~~d~~~l~~~l~~g~~~~vy~G~dPTag~LHLGh~-----v~~~~l~~lQ~~~g~~~i~--lI~D~ta~l~---- 150 (432)
T 2ip1_A 82 GLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHM-----IPFVFTKWLQEVFDVPLVI--ELTDDEKFLF---- 150 (432)
T ss_dssp TSEEEEESHHHHHHHHHHTCCCEEEEEECCCSSCCBGGGH-----HHHHHHHHHHHHHTCCEEE--EECHHHHHHH----
T ss_pred CCcccCCCHHHHHHHHhcCCCeEEEEeecCCCCCccHHHH-----HHHHHHHHHHHHcCCeEEE--EEecccceeC----
Q ss_pred HHhhhcCCCCCCCCchhhHHHHHHHHhhhcCccHHHHHHHHHHHHHhhc-C-Chh---------HH--HHHHHHHHhh-H
Q psy6783 602 HLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQR-F-DPD---------YK--KAWEMICDVS-R 667 (1119)
Q Consensus 602 g~~~~~~~~~~~~~~i~~L~~~Y~~~~~~~~~d~~~~~~a~~~~~~le~-g-d~e---------~~--~lW~~~rd~S-i 667 (1119)
....+.+...+.+++....+.. | ||+ .. ..|.-++.++ +
T Consensus 151 ---------------------------~~~~t~e~i~~~~~~~~~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~~v~rm 203 (432)
T 2ip1_A 151 ---------------------------KHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQ 203 (432)
T ss_dssp ---------------------------CTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHCSHHHHHHHHHHHTS
T ss_pred ---------------------------CCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCchhhhhhHHHHHHHHHhh
Q ss_pred HHHHHHHHHhcccccc-cccchhhhhHHHHHHHHHhcCCeeeecCceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCc
Q psy6783 668 RDFQKIYDRLNVTLTE-RGESFYQKHMEQLVPYLEKKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRM 746 (1119)
Q Consensus 668 ~~~~~~Y~rL~V~Fd~-~gES~y~~~~~~vi~~l~~~g~~~~~~~~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~ 746 (1119)
-.++..=+|++-.=.. .||=.|.-++.-=+=.|.---......-.+.+.....-|.-|+++...++++.++..|
T Consensus 204 ~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p----- 278 (432)
T 2ip1_A 204 ITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKP----- 278 (432)
T ss_dssp CCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGGHHHHHHHHHHHHHHTSCCC-----
T ss_pred hcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCceEEEeccCcHHHHHHHHHHHHHhCCCCc-----
Q ss_pred eeeeeeEEECCCC--cccccccCC-eeeHHHHHHHHHHHHHH
Q psy6783 747 DFVGFGVVLGEDR--KKFKTRSGD-TVKLSELLDEGLRRSLD 785 (1119)
Q Consensus 747 ~h~~fg~V~~~~~--~~~str~G~-~v~l~~ll~~~~~~~~~ 785 (1119)
..+...++.+.+| .|||.+.|+ .|.|+|.=++...+.+.
T Consensus 279 ~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~ 320 (432)
T 2ip1_A 279 ALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINK 320 (432)
T ss_dssp EEEEECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHH
T ss_pred eeeccccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhh
No 92
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=32.59 E-value=3.8e+02 Score=30.64 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=39.5
Q ss_pred ecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCC--cccccccCC-eeeHHHHHHHH
Q psy6783 718 TDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR--KKFKTRSGD-TVKLSELLDEG 779 (1119)
Q Consensus 718 ~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~--~~~str~G~-~v~l~~ll~~~ 779 (1119)
...-|.-|+++-+.++.+.+...| ...+ ..++.+-+| +|||.++++ .|.|.|.=++.
T Consensus 213 vG~DQ~~hl~l~Rdla~r~n~~~p---~~l~--~~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I 272 (392)
T 3jxe_A 213 AAIDQDPYWRLQRDFAESLGYYKT---AALH--SKFVPSLTSLSGKMSASKPETAIYLTDSPEDV 272 (392)
T ss_dssp EEGGGHHHHHHHHHHTGGGTSCCC---EEEE--ECCCCCSSCSSSCCCTTSGGGCCBTTCCHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCC---eeee--cccccCCCCCccccccCCCCCeeeCCCCHHHH
Confidence 333466788888888988886443 2223 346777776 599999998 89998754443
No 93
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=31.42 E-value=5.5e+02 Score=29.76 Aligned_cols=55 Identities=15% Similarity=0.264 Sum_probs=39.6
Q ss_pred cCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCC--cccccccCC-eeeHHHHHHH
Q psy6783 719 DLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR--KKFKTRSGD-TVKLSELLDE 778 (1119)
Q Consensus 719 d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~--~~~str~G~-~v~l~~ll~~ 778 (1119)
..-|.-|+++-.+++++.++..| .. +...++.+.+| .|||.++|+ .|.|+|.=++
T Consensus 263 G~DQ~~~i~l~Rdla~r~~~~~P---~~--l~~pll~gLdG~~~KMSKS~~nsaI~L~D~p~~ 320 (437)
T 1r6u_A 263 AIDQDPYFRMTRDVAPRIGYPKP---AL--LHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQ 320 (437)
T ss_dssp EGGGHHHHHHHHHHGGGGTCCCC---EE--EEECCCEETTEEEEECCTTSSSSCCBTTCCHHH
T ss_pred ehhhHHHHHHHHHHHHHhCCCCc---eE--eecccccCCCCCccccCCCCCCCeeeccCCHHH
Confidence 33466788888888888886433 22 33457888888 799999998 7999875443
No 94
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=30.07 E-value=11 Score=42.49 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=26.6
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCc
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDW 383 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~ 383 (1119)
|+.--|||+||+||.=+++ .-+..+-+ ||+| .+.|.||
T Consensus 10 ~sG~~PTG~lHLGhy~g~l--~~~~~lQ~--~~~~--~~~iaD~ 47 (341)
T 3sz3_A 10 LSGVQPSGELSIGNYLGAL--RQWQQMQD--DYDC--QYCVVDL 47 (341)
T ss_dssp EEEECSSSCCBHHHHHHTG--GGHHHHHH--HSEE--EEEECHH
T ss_pred EeCcCCCCcccHHHHHHHH--HHHHHHHh--cCeE--EEEEecc
Confidence 6778899999999976665 23334433 4664 5788885
No 95
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=29.78 E-value=28 Score=40.00 Aligned_cols=40 Identities=18% Similarity=0.046 Sum_probs=27.6
Q ss_pred EeeCCCCCCCccccccchhcHHHHHHHHHHH-cCCcEEEecccCCch
Q psy6783 339 DFSSPNIAKEMHVGHLRSTIIGDTISRLLEY-LGHDVVRLNHVGDWG 384 (1119)
Q Consensus 339 EfsSpNptkpLHVGHlRsaiiGDsLaril~~-~Gy~V~renyInD~G 384 (1119)
=|+.--|||+||+||+- |--+.|-|.. .|..|.-. |+|+.
T Consensus 85 vysG~~PTG~lHLGh~v----~~~~~~~lQ~~~g~~v~i~--I~D~~ 125 (386)
T 3hzr_A 85 IFIQKYPQKEVALEEYI----TLEFARYLQDAFNIQVIIQ--ILDDI 125 (386)
T ss_dssp EEEEECCCSSCBGGGHH----HHHHHHHHHHHHCCEEEEE--ECHHH
T ss_pred EEeccCCCCCccHHHHH----HHHHHHHHHHhcCCeEEEE--eCchH
Confidence 37888999999999954 4423343554 47777655 88864
No 96
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=29.60 E-value=6.1e+02 Score=29.70 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=39.7
Q ss_pred CCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCC--cccccccCC-eeeHHHHHHHH
Q psy6783 720 LGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDR--KKFKTRSGD-TVKLSELLDEG 779 (1119)
Q Consensus 720 ~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~--~~~str~G~-~v~l~~ll~~~ 779 (1119)
.-|.-|+++-..++++.|+..| .. +...++.+.+| .|||.++|+ .|.|+|.=++.
T Consensus 311 ~DQ~~~i~l~Rdla~r~~~~~p---~~--l~~pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i 368 (477)
T 1r6t_A 311 IDQDPYFRMTRDVAPRIGYPKP---AL--LHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQI 368 (477)
T ss_dssp GGGHHHHHHHHHHGGGGTCCCC---EE--EEECCCEETTEEEEECCTTSTTCCCBTTCCHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCCc---ee--eecccccCCCCCccccCCCCCCCceeecCCHHHH
Confidence 3466788888888888886433 22 33467888888 799999999 79998754433
No 97
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=27.93 E-value=22 Score=40.34 Aligned_cols=42 Identities=26% Similarity=0.537 Sum_probs=28.2
Q ss_pred eeCCCCCCC-ccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHH
Q psy6783 340 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387 (1119)
Q Consensus 340 fsSpNptkp-LHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi 387 (1119)
|+.--|||+ ||+||+= ++. .+.++ ...||+| .+.|+||=..+
T Consensus 50 y~G~~PTg~sLHLGhl~-~l~--~~~~l-Q~~G~~~--~~lIaD~hal~ 92 (356)
T 2pid_A 50 YCGFDPTADSLHVGHLL-ALL--GLFHL-QRAGHNV--IALVGGATARL 92 (356)
T ss_dssp EEEECCSSSSCBHHHHH-HHH--HHHHH-HHTTCEE--EEEECTTGGGT
T ss_pred EEeecCCCCcccHHHHH-HHH--HHHHH-HHCCCcE--EEEEccceeee
Confidence 889999998 9999933 332 23333 3458765 67788864433
No 98
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=26.98 E-value=4.9e+02 Score=29.67 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=41.5
Q ss_pred ceEEEEecCCcchhhHHHHHHHHHcCCCCCCCCCceeeeeeEEECCCCc-ccccc-cCCeeeHHHHHHH
Q psy6783 712 LGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRK-KFKTR-SGDTVKLSELLDE 778 (1119)
Q Consensus 712 ~~~v~v~d~~~~~h~~~l~~~~~~~g~~~~~~~~~~h~~fg~V~~~~~~-~~str-~G~~v~l~~ll~~ 778 (1119)
+..|-| ..-|.-|+++-+.++++.+...| - .+...++.+-+|. |||.+ .|+.|.|.|.-++
T Consensus 225 a~~Vpv-G~DQ~~hl~l~Rdla~r~n~~~p---~--~l~~~~l~gLdG~~KMSKSd~~~~I~L~D~p~~ 287 (386)
T 3hzr_A 225 RCLVLD-SIKNVQFHSIIDQIATTLNFIQP---T--VLFHKMVPLLSGVTKFDIPSDHNSILLSDNAKQ 287 (386)
T ss_dssp EEEEEE-EGGGHHHHHHHHHHHHHHTCCCC---E--EEEECCCCCTTCTTCCCCCCTTTSCBTTCCHHH
T ss_pred cccccc-ccchHHHHHHHHHHHHHcCCCCc---e--EeecCeeeCCCCCCccCcCCCCCeeecCCCHHH
Confidence 334443 34467899988999999987444 1 2233467777774 99999 6889999875443
No 99
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A
Probab=25.50 E-value=76 Score=33.01 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=67.6
Q ss_pred cchhhHHHHHHHhhhhCCCEEEEEeecCcccchhhhhhhhhhHHHHHHHHHHcCCceeeecccCcchhhHHHHHHHHhhh
Q psy6783 527 YDTSDLAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDK 606 (1119)
Q Consensus 527 Y~t~DIAy~~~R~~~~~~d~iIyVv~~~Q~~H~~~~~RStIIG~~l~~l~~~~G~~V~r~NylGDwG~QfG~l~~g~~~~ 606 (1119)
|.|+|+=..++ ++||..--.+|..++|. |+. ++..|++..|-.+-.. |+|-.+|
T Consensus 40 klArdvY~~l~--e~~g~~~F~NIa~SEq~-H~d----------al~~Ll~rYgl~~P~~---~~~~G~f---------- 93 (196)
T 3q4o_A 40 KLARDVYLTLY--NKWKLQIFKNIAESEQT-HMD----------AVKYLLEKYNIPDPVK---NDSIGVF---------- 93 (196)
T ss_dssp HHHHHHHHHHH--HHHCCHHHHHHHHHHHH-HHH----------HHHHHHHHTTCCCSCS---CCSTTCC----------
T ss_pred HHHHHHHHHHH--HHhCCchHHHHHHHHHH-HHH----------HHHHHHHHhCCCCCCC---CCCCCee----------
Confidence 56777743333 23442222355566665 554 4677777766554221 2332222
Q ss_pred cCCCCCCCCchhhHHHHHHHHhhhcCcc--HHHHHHHH-------HHHHHh-hcCChhHHHHHHHHHHhh---HHHHHHH
Q psy6783 607 FPDYLTKSPPIADLQAFYKESKKRFDED--EIFKKRAY-------QCVVAL-QRFDPDYKKAWEMICDVS---RRDFQKI 673 (1119)
Q Consensus 607 ~~~~~~~~~~i~~L~~~Y~~~~~~~~~d--~~~~~~a~-------~~~~~l-e~gd~e~~~lW~~~rd~S---i~~~~~~ 673 (1119)
...+|.++|.....+-... +.++-.+- ..-..+ ..-+++++.+...+++-| +..|.+.
T Consensus 94 ---------~~p~lq~LY~~L~e~G~~S~~dAl~vGa~iEe~dI~dl~~~l~~t~~~Di~~Vy~nL~~gS~nHLrAF~r~ 164 (196)
T 3q4o_A 94 ---------SNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRM 164 (196)
T ss_dssp ---------SSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------ccHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456788887765443222 12221111 111222 247799999999999999 5667777
Q ss_pred HHHhccccc
Q psy6783 674 YDRLNVTLT 682 (1119)
Q Consensus 674 Y~rL~V~Fd 682 (1119)
.+|.|+.+.
T Consensus 165 L~~~G~~Y~ 173 (196)
T 3q4o_A 165 LNNYGSNYT 173 (196)
T ss_dssp HHHTTCCCC
T ss_pred HHHCCCCCC
Confidence 888899887
No 100
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=25.47 E-value=28 Score=42.93 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=27.8
Q ss_pred eeCCCCCCCccccccchhcHHH-HHHHHHHHcCCcEEEecccCCchhH
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGD-TISRLLEYLGHDVVRLNHVGDWGTQ 386 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGD-sLaril~~~Gy~V~renyInD~G~Q 386 (1119)
|+.--|||.||+|| .++=. .+.+ |...||+| .+.|+||=..
T Consensus 44 y~G~~PTg~lHLG~---~v~~~~~~~~-lQ~~G~~~--~~lIaD~ha~ 85 (690)
T 3p0j_A 44 YDGFEPSGRMHIAQ---GIFKAVNVNK-CTAAGCEF--VFWVADWFAL 85 (690)
T ss_dssp EEEECCCSCCBHHH---HHHHHHHHHH-HHHTTEEE--EEEECCGGGG
T ss_pred EeeecCCCcchhHh---hHHHHHHHHH-HHHCCCcE--EEEEeeeEEE
Confidence 78889999999999 23222 2333 44568765 6788997443
No 101
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=24.29 E-value=30 Score=39.51 Aligned_cols=38 Identities=16% Similarity=0.427 Sum_probs=25.9
Q ss_pred eeCCCCCCCccccccchhcHHHH-HHHHHHHcCCcEEEecccCCc
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDT-ISRLLEYLGHDVVRLNHVGDW 383 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDs-Laril~~~Gy~V~renyInD~ 383 (1119)
|+.--|||.||+|| .++-.. +.+ |..+||+ ..+.|+||
T Consensus 60 y~G~~PTg~lHlG~---gvl~~~~~~~-lQ~~G~~--~~~lIaD~ 98 (373)
T 3vgj_A 60 YDGFEPSGRMHIAQ---GLLKSIIVNK-LTSNGCT--FIFWIADW 98 (373)
T ss_dssp EEEECCCSSCBHHH---HHHHHHHHHH-HHTTTCE--EEEEECHH
T ss_pred EeCCCCCCCceehh---hHHHHHHHHH-HHHCCCc--EEEEEecc
Confidence 78889999999999 233222 333 4456875 45678886
No 102
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=22.56 E-value=41 Score=39.18 Aligned_cols=43 Identities=21% Similarity=0.460 Sum_probs=27.4
Q ss_pred eeCCCCCCC-ccccccchhcHHHHHHHHHHHcCCcEEEecccCCchhHHH
Q psy6783 340 FSSPNIAKE-MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFG 388 (1119)
Q Consensus 340 fsSpNptkp-LHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~Qi~ 388 (1119)
|+.--|||+ ||+||+= ++ -.+.++ ..+||+ ....|+||=..++
T Consensus 41 y~G~dPTg~sLHlGh~v-~l--~~l~~l-Q~~G~~--~i~lIgD~ta~ig 84 (432)
T 1h3f_A 41 KLGADPTRPDLHLGHAV-VL--RKMRQF-QELGHK--VVLIIGDFTGMIG 84 (432)
T ss_dssp EEEECTTCCSCBHHHHH-HH--HHHHHH-HHTTCE--EEEEECCCC----
T ss_pred EEcccCCCCCCchhhHH-HH--HHHHHH-HHCCCC--EEEEEccceEEec
Confidence 788899997 9999954 21 223333 345887 4788999865554
No 103
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=20.72 E-value=40 Score=38.04 Aligned_cols=41 Identities=12% Similarity=0.283 Sum_probs=26.9
Q ss_pred eeCCCCCCCccccccchhcHHHHHHHHHHHcCCcEEEecccCCchh
Q psy6783 340 FSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT 385 (1119)
Q Consensus 340 fsSpNptkpLHVGHlRsaiiGDsLaril~~~Gy~V~renyInD~G~ 385 (1119)
|+.--|||.||+||.=.++ ..+.++- ..||+ ....|+||=.
T Consensus 44 y~G~~PTg~lHlGhyl~~l--~~~~~lQ-~~G~~--~~~~i~D~~a 84 (348)
T 2j5b_A 44 YNGFEPSGRIHIAQALITV--MNTNNMI-ECGGQ--MIIYIADWFA 84 (348)
T ss_dssp EEEECCCSSCBHHHHHHHH--HHHHHHH-HTTEE--EEEEECHHHH
T ss_pred EeccCCCCCCchhHHHHHH--HHHHHHH-HcCCc--EEEEeccchh
Confidence 8999999999999921111 2333443 45765 4678888643
Done!