RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6783
(1119 letters)
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 165 bits (417), Expect = 2e-45
Identities = 76/280 (27%), Positives = 121/280 (43%), Gaps = 21/280 (7%)
Query: 330 LNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 389
L + +V+++FSSPNIAK H GHLRSTIIG ++ L E LG +V+R+N++GDWG QFG+
Sbjct: 4 LVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGL 63
Query: 390 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDED-------EIFKKRAYQCVVALQRF 442
L + + PI L Y K +E+ + +A + ++
Sbjct: 64 LAVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDG 123
Query: 443 DPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKH--MEQLVPYLEKKGLLELD 500
D + K W+ + S + Y RLN+ M + + ++KGL D
Sbjct: 124 DEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHED 183
Query: 501 DGRKIMWGEDRGSIP--MTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDLGQGVH 558
G ++ + KSDG Y T D+ A R E+ D ++YV Q +H
Sbjct: 184 KGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLH 243
Query: 559 FRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGM 598
E + +G + + ++G GM
Sbjct: 244 AAQFFEIL----------KQMGFEWAKDLQHVNFGMVQGM 273
Score = 157 bits (397), Expect = 1e-42
Identities = 68/334 (20%), Positives = 112/334 (33%), Gaps = 65/334 (19%)
Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
H R STIIG ++ L E LG +V+R+N++GDWG QFG+L + + PI
Sbjct: 27 HLR----STIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPI 82
Query: 618 ADLQAFYKESKKRFDED-------EIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDF 670
L Y K +E+ + +A + ++ D + K W+ + S +
Sbjct: 83 HHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKY 142
Query: 671 QKIYDRLNVTLTERGESFYQKH--MEQLVPYLEKKGNLSLTKKL---------------- 712
Y RLN+ M + + ++KG K
Sbjct: 143 IDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAI 202
Query: 713 ----------------------------GIVYVTDLGQGVHFRLLEECAKKAGILNPNKT 744
++YV Q +H E K+ G
Sbjct: 203 VQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDL 262
Query: 745 RMDFVGFGVVLGEDRKKFKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEA 804
+ G + TR G V L +L+E + + +K KN + E
Sbjct: 263 QHVNFGM-------VQGMSTRKGTVVFLDNILEETKEKMHEVMK-KNENKYAQIEHPEEV 314
Query: 805 QQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 838
V + D+ R +Y F +++ML G
Sbjct: 315 ADLVGISAVMIQDMQGKRINNYEFKWERMLSFEG 348
Score = 61.5 bits (148), Expect = 2e-10
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 936 KLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHNRNLDYVFSFDKMLDDRG 988
++ KN + E V + D+ R +Y F +++ML G
Sbjct: 296 EVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEG 348
Score = 29.1 bits (64), Expect = 3.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 134 LNKKLRVLVDFSSPNIA 150
L + +V+++FSSPNIA
Sbjct: 4 LVENKKVIIEFSSPNIA 20
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 147 bits (371), Expect = 5e-39
Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 13/229 (5%)
Query: 328 PTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQF 387
P + VLV+ +S N KE+HVGHLR+ +GD I+R+L Y G +V+ LN++ D G Q
Sbjct: 1 PFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQA 60
Query: 388 GMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYK 447
+ L+ + K Y + E E + + + AL+R + +
Sbjct: 61 AETLFALRHYGLTWDGKEKYDHFAGRAYVR-LHQDPEYERLQPAIEEVLHALERGELREE 119
Query: 448 KAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIM- 506
++ ++ L V ++ +++ + LE+ + K
Sbjct: 120 VNRILLAQMATMHALNARYDLLVWESDI---VRAGLLQKALALLEQSPHVFRPREGKYAG 176
Query: 507 --------WGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWI 547
+++S+G TY D+A ++ +
Sbjct: 177 ALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRF 225
Score = 99.2 bits (246), Expect = 1e-22
Identities = 53/314 (16%), Positives = 95/314 (30%), Gaps = 19/314 (6%)
Query: 532 LAAIRQRIEEEKADWIVYVTDLGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGD 591
L A+R V E + I +L L +R V
Sbjct: 64 LFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELR-EEVNR 122
Query: 592 WGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRF 651
+ L ++ + +S + K +F+ R + AL
Sbjct: 123 ILLAQMATMHALNARYDLLVWESDIVRA-GLLQKALALLEQSPHVFRPREGKYAGALVMD 181
Query: 652 DPDYKKAWEMICDVSRR----------DFQKIYDRLNVTLTERGESFYQKHMEQLVPYLE 701
E V R D + ++ + R Y+ +
Sbjct: 182 ASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRP-YENPYYPGLRTSA 240
Query: 702 KKGNLSLTKKLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKK 761
+G K + V D+ Q L+ AG + + + VL E R+
Sbjct: 241 PEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGY-PALAEKAHHLAYETVLLEGRQ- 298
Query: 762 FKTRSGDTVKLSELLDEGLRRSLDKLKDKNRHTELTPTELSEAQQAVAYGCIKYADLSHN 821
R G V + E+L+E RR+ +++KN + EA + VA G I+++ +
Sbjct: 299 MSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHP----DKEEAARMVALGAIRFSMVKTE 354
Query: 822 RNLDYVFSFDKMLD 835
F + + L
Sbjct: 355 PKKQIDFRYQEALS 368
Score = 86.1 bits (212), Expect = 2e-18
Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 8/149 (5%)
Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 617
H R + +GD I+R+L Y G +V+ LN++ D G Q + L+ + K
Sbjct: 26 HLR----NIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYD 81
Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
Y + E E + + + AL+R + + ++ ++ L
Sbjct: 82 HFAGRAYVR-LHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDL 140
Query: 678 NVTLTERGESFYQKHMEQLVPYLEKKGNL 706
V ++ +++ + LE+ ++
Sbjct: 141 LVWESDI---VRAGLLQKALALLEQSPHV 166
Score = 29.9 bits (66), Expect = 1.8
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 132 PTLNKKLRVLVDFSSPNIA 150
P + VLV+ +S N
Sbjct: 1 PFPRRPGVVLVEHTSVNPN 19
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 100 bits (250), Expect = 2e-25
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 989 NTAVYLLYAYTRIASIARTAGINSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLV 1048
+T YL YA++R+ S+ R A +++ + L+ L + L + DVL
Sbjct: 1 DTGPYLQYAHSRLRSVERNASGITQEK--WINADFSLLKEPAAKLLIRLLGQYPDVLRNA 58
Query: 1049 TRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAEGKIKTVHTGRLLLAEATAKVMKKCF 1108
+ + YL+ ++ S YD + + E + T RL L A +V+
Sbjct: 59 IKTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQTEE-----LATARLALYGAARQVLYNGM 113
Query: 1109 DILNIRTVHKM 1119
+L + V +M
Sbjct: 114 RLLGLTPVERM 124
Score = 40.8 bits (95), Expect = 1e-04
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 839 NTAVYLLYAYTRIASIARTA-GINSEDPPEPDPSQSEVEDRCC 880
+T YL YA++R+ S+ R A GI E D S +
Sbjct: 1 DTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKL 43
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 96.3 bits (239), Expect = 6e-24
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 12/135 (8%)
Query: 988 GNTAVYLLYAYTRIASIARTAG-INSEDLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLM 1046
G+T Y+ YA+ R SI R AG + DL S E ALA LL + ++
Sbjct: 1 GDTGPYVQYAHARAHSILRKAGEWGAPDL---------SQATPYERALALDLLDFEEAVL 51
Query: 1047 LVTRDLCLHHLCEYLYDISTAFSEFYDNCYCIEKDAE--GKIKTVHTGRLLLAEATAKVM 1104
+ H L +YL D++ +++ +Y+ + + + RL L ++ + +
Sbjct: 52 EAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTL 111
Query: 1105 KKCFDILNIRTVHKM 1119
D+L I M
Sbjct: 112 ATGLDLLGIPAPEVM 126
Score = 43.9 bits (103), Expect = 1e-05
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 838 GNTAVYLLYAYTRIASIARTAG-INSEDPPEPDPSQSEVEDRCCPSHAKTHRK 889
G+T Y+ YA+ R SI R AG + D + P + +
Sbjct: 1 GDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEA 53
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 59.4 bits (142), Expect = 8e-10
Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 9/216 (4%)
Query: 319 DIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN 378
D I + + K+ V+ +P+ +HVG+ R + L G++V ++
Sbjct: 4 DYIADKIIRERGEKEKYVVESGITPS--GYVHVGNFRELFTAYIVGHALRDKGYEVRHIH 61
Query: 379 HVGDWGTQFGMLIAHLQDKFPDYLTK--SPPIADLQAFYKESKKRFDEDEIFKKRAYQCV 436
D+ + ++ ++ DYL S ++ + E ++ V
Sbjct: 62 MWDDYDRFRKVP-RNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEV 120
Query: 437 VALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGL 496
L + + + ++ KI + LN + ++ + Y +
Sbjct: 121 DLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRR 180
Query: 497 ----LELDDGRKIMWGEDRGSIPMTIVKSDGGFTYD 528
+E D G K+ + G ++S
Sbjct: 181 EAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRW 216
Score = 40.5 bits (93), Expect = 7e-04
Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 13/166 (7%)
Query: 535 IRQRIEEEKADWIVYVTDLGQGV-------HFRLLEESTIIGDTISRLLEYLGHDVVRLN 587
I +I E+ + YV + G +FR + L G++V ++
Sbjct: 6 IADKIIRERGEKEKYVVESGITPSGYVHVGNFR----ELFTAYIVGHALRDKGYEVRHIH 61
Query: 588 HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVA 647
D+ + ++ ++ DYL ES + ++ +
Sbjct: 62 MWDDYDRFRKVP-RNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEV 120
Query: 648 LQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHM 693
+ + K E ++ R F+K + + R +
Sbjct: 121 DLLYASELYKRGEYSEEI-RLAFEKRDKIMEILNKYREIAKQPPLP 165
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS),
N-terminal 'additional' domain {Thermus thermophilus
[TaxId: 274]}
Length = 96
Score = 49.5 bits (118), Expect = 6e-08
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 19/108 (17%)
Query: 211 LSDVFTHAVQVAFPELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 269
L A+ A E+G VA + K GD+ AL K + K P
Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKVARAPKD---KPGDYGVP-LFALAKELR-----KPPQ 52
Query: 270 DIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 317
IAQ + L + + + G++N L +
Sbjct: 53 AIAQELKD----RLPLPEFVEEAV-----PVGGYLNFRLRTEALLREA 91
Score = 47.5 bits (113), Expect = 2e-07
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 19/103 (18%)
Query: 15 LSDVFTHAVQVAFPELG-DKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPF 73
L A+ A E+G VA + K GD+ AL K + K P
Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKVARAPKD---KPGDYGVP-LFALAKELR-----KPPQ 52
Query: 74 DIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVY 116
IAQ + L + + + G++N L
Sbjct: 53 AIAQELKD----RLPLPEFVEEAV-----PVGGYLNFRLRTEA 86
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 51.1 bits (121), Expect = 3e-07
Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 1/108 (0%)
Query: 349 MHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPI 408
H+GH R+ + D ++R L +LG+ + + ++ D + + +
Sbjct: 36 CHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANE-NGESFVAMVDRMIA 94
Query: 409 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDV 456
+ F + R D + + + ++ DV
Sbjct: 95 EMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDV 142
Score = 42.2 bits (98), Expect = 3e-04
Identities = 28/248 (11%), Positives = 64/248 (25%), Gaps = 31/248 (12%)
Query: 558 HFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKF---------- 607
H R + + D ++R L +LG+ + + ++ D + + F
Sbjct: 40 HGR----TFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAE 95
Query: 608 ------------PDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDY 655
PD ++ E + V
Sbjct: 96 MHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVL 155
Query: 656 KKAWEMICDVSRRDFQKIYDRLNVT-----LTERGESFYQKHMEQLVPYLEKKGNLSLTK 710
+ R R + +++ GE + P + + K
Sbjct: 156 SRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCK 215
Query: 711 KLGIVYVTDLGQGVHFRLLEECAKKAGILNPNKTRMDFVGFGVVLGEDRKKFKTRSGDTV 770
+LG + G E + +++ ++ DR+K G+
Sbjct: 216 QLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFF 275
Query: 771 KLSELLDE 778
+ ++L
Sbjct: 276 TVRDVLKY 283
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 48.0 bits (113), Expect = 4e-06
Identities = 33/234 (14%), Positives = 68/234 (29%), Gaps = 12/234 (5%)
Query: 323 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN---H 379
N + K ++ PN+ +H+GH + D + R G + V L H
Sbjct: 23 NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82
Query: 380 VGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVAL 439
G + + K L + + + + +ES + K+
Sbjct: 83 AGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQ--LKRLGASA---- 136
Query: 440 QRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLEL 499
+ + E R F + Y R ++ + L +
Sbjct: 137 -DWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETC--SR 193
Query: 500 DDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTDL 553
+ + M + + D+A + +R ++ DW+ V D
Sbjct: 194 CGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDW 247
Score = 30.3 bits (67), Expect = 1.3
Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 10/115 (8%)
Query: 565 STIIGDTISRLLEYLGHDVVRLN---HVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQ 621
+ D + R G + V L H G + + K L + + +
Sbjct: 56 DNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVW 115
Query: 622 AFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDR 676
+ +ES + K+ + + E R F + Y
Sbjct: 116 QWKEESGGTILKQ--LKRLGASA-----DWSREAFTMDEKRSRAVRYAFSRYYHE 163
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 45.4 bits (106), Expect = 3e-05
Identities = 21/174 (12%), Positives = 47/174 (27%), Gaps = 15/174 (8%)
Query: 343 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDYL 402
+ E H+GH +T++ D ++R G+ + + G +
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTF---FLTGT-DEHGETVYRAAQA----- 62
Query: 403 TKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQ 462
P A + K+ +D I + + +KK +++
Sbjct: 63 AGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRT------TEERHKKVVQLVLKKVYEAGD 116
Query: 463 KIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDDGRKIMWGEDRGSIPM 516
Y E FY + +E + ++ +
Sbjct: 117 IYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWL 170
Score = 30.0 bits (66), Expect = 1.6
Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 25/150 (16%)
Query: 547 IVYVTD---LGQGVHFRLLEESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHL 603
I YV LG H +T++ D ++R G+ + + G +
Sbjct: 11 IYYVNAEPHLG---HAY----TTVVADFLARWHRLDGYRTF---FLTGT-DEHGETVYRA 59
Query: 604 QDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMIC 663
P A + K+ +D I + + +KK +++
Sbjct: 60 AQA-----AGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRT------TEERHKKVVQLVL 108
Query: 664 DVSRRDFQKIYDRLNVTLTERGESFYQKHM 693
Y E FY +
Sbjct: 109 KKVYEAGDIYYGEYEGLYCVSCERFYTEKE 138
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 43.4 bits (101), Expect = 1e-04
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 335 RVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
++LV + P +H+GH+ I D R GH+V +
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFI 45
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS),
N-terminal 'additional' domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 40.2 bits (94), Expect = 2e-04
Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 27/146 (18%)
Query: 180 QGISSSSSSQTKGTAKKMNVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEK 239
+ +S + + K + +N+ R + LS + + FP ++ TN
Sbjct: 11 KKLSIAEPAVAKDSHPDVNIVDLMRNYISQELSKISGVDSSLIFP-------ALEWTNTM 63
Query: 240 YVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVA 299
+ GD K NP D+A + A ++K+E
Sbjct: 64 ---ERGDLLIPIPRLRIK-------GANPKDLAV--------QWAEKFPCGDFLEKVEAN 105
Query: 300 KPGFVNVFLSRVYAGEQ-IKDIIVNG 324
P F+ F + + + I DI+
Sbjct: 106 GP-FIQFFFNPQFLAKLVIPDILTRK 130
Score = 37.9 bits (88), Expect = 0.001
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 23/118 (19%)
Query: 12 RDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKN 71
R+Y+S + V + ++ TN + GD K N
Sbjct: 35 RNYISQELSKISGVDSSLIFP---ALEWTNTM---ERGDLLIPIPRLRIK-------GAN 81
Query: 72 PFDIAQSIASVVTSELATNPSLAKVIDKIEAAKPGFVNVFLSRVYAGEQ-MKDIIVNG 128
P D+A + A ++K+EA P F+ F + + + + DI+
Sbjct: 82 PKDLAV--------QWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRK 130
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 41.5 bits (96), Expect = 5e-04
Identities = 18/153 (11%), Positives = 39/153 (25%), Gaps = 5/153 (3%)
Query: 343 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLNHVGDWGT----QFGMLIAHLQDKF 398
P HVGH ++ D R G+ R G + + +
Sbjct: 47 PTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKRE 106
Query: 399 PDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKA-WEMICDVS 457
+ + +K ++ A +P Y ++ W + ++
Sbjct: 107 IEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLF 166
Query: 458 RRDFQKIYDRLNVTLTERGESFYQKHMEQLVPY 490
R ++ G + P+
Sbjct: 167 DRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPH 199
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 40.8 bits (94), Expect = 7e-04
Identities = 25/152 (16%), Positives = 40/152 (26%), Gaps = 18/152 (11%)
Query: 343 PNIAKEMHVGHLR-STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDK---- 397
P +H GHL + + D R L G DVV + + G I+ K
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVV---FICGT-DEHGTPISFRALKEGRS 66
Query: 398 ---FPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMIC 454
D + I +A E I K + + + KK +
Sbjct: 67 PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAY 126
Query: 455 DVSRRDFQKIYDRLNVTLTERGESFYQKHMEQ 486
+ F + G +
Sbjct: 127 CEHDKMFLPDRFAIC------GRPISFRDSAH 152
Score = 29.6 bits (65), Expect = 2.0
Identities = 20/138 (14%), Positives = 34/138 (24%), Gaps = 17/138 (12%)
Query: 565 STIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDK-------FPDYLTKSPPI 617
+ + D R L G DVV + + G I+ K D + I
Sbjct: 25 AYLPADIFVRYLRLKGEDVV---FICGT-DEHGTPISFRALKEGRSPREIVDEFHEQIKI 80
Query: 618 ADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL 677
+A E I K + + + KK + + F +
Sbjct: 81 TFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFAI 140
Query: 678 NVTLTERGESFYQKHMEQ 695
G +
Sbjct: 141 C------GRPISFRDSAH 152
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 37.6 bits (86), Expect = 0.007
Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 3/116 (2%)
Query: 343 PNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRLN---HVGDWGTQFGMLIAHLQDKFP 399
P +H+GH + I+ D I R G + G Q + K
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMS 116
Query: 400 DYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICD 455
+ + KK F + + ++ + + + D
Sbjct: 117 TAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMAD 172
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 36.1 bits (82), Expect = 0.025
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 326 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLRSTIIGDTISRLLEYLGHDVVRL 377
P K VLV F P + ++H+GHL++ +GD ++R G++V+
Sbjct: 27 DLPGGRGKQYVLVMF--PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHP 76
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 30.2 bits (68), Expect = 0.34
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 889 KPPFTYTELIEQALKE 904
KPP++Y LI A++
Sbjct: 4 KPPYSYIALITMAIQN 19
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 29.4 bits (66), Expect = 0.54
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 889 KPPFTYTELIEQALKE 904
KPP++Y +LI QA+
Sbjct: 3 KPPYSYAQLIVQAITM 18
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 29.0 bits (65), Expect = 0.69
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 889 KPPFTYTELIEQALKE 904
+PPFTY LI QA+ E
Sbjct: 2 RPPFTYATLIRQAIME 17
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 97
Score = 28.7 bits (64), Expect = 1.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 889 KPPFTYTELIEQALKEN 905
KPP++Y LI A+ ++
Sbjct: 2 KPPYSYIALITMAILQS 18
>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 480
Score = 30.4 bits (68), Expect = 1.3
Identities = 40/201 (19%), Positives = 68/201 (33%), Gaps = 29/201 (14%)
Query: 435 CVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRL--NVTLTERGESFYQKHMEQLVPYLE 492
C V L R + K+ R +++ D L NV + + H Q+ L
Sbjct: 97 CGVRLIRTNLTEKEV--------RPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLV 148
Query: 493 KKGLLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLAAIRQRIEEEKADWIVYVTD 552
+D+G W D + + G + +D A+ QR K +
Sbjct: 149 DGAKWAVDNGYG--WERDLERL-------EEGGRMEGADPEAVSQR---AKQRGAPQLGS 196
Query: 553 LGQGVHFRLLEESTIIGDTISRLLEYLG---HDVVRLNHVGDW--GTQFGMLIAHLQDKF 607
LG G HF ++ I D + + G VV + H G G Q + ++
Sbjct: 197 LGSGNHFLEVQVVDKIFDP--EVAKAYGLFEGQVVVMVHTGSRGLGHQVASDYLRIMERA 254
Query: 608 PDYLTKSPPIADLQAFYKESK 628
P +L + +S+
Sbjct: 255 IRKYRIPWPDRELVSVPFQSE 275
>d2ff4a1 a.4.6.1 (A:10-104) Probable regulatory protein EmbR
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 95
Score = 28.4 bits (63), Expect = 1.3
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 1014 DLRVAAQSTPVSLEHEKEFALAKTLLRMNDVLMLVTRDLCLHHLCEYLYDISTAFS 1069
L++ TPV K+ A+ L+ + V D + L E S
Sbjct: 9 PLQMTIDGTPVPSGTPKQRAVLAMLVINRN--RPVGVDALITALWEEWPPSGARAS 62
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 30.6 bits (69), Expect = 1.4
Identities = 16/124 (12%), Positives = 34/124 (27%), Gaps = 15/124 (12%)
Query: 599 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKR--AYQCVVALQRFDPDYK 656
+I +++ + P + F + + R +A D K
Sbjct: 179 IINEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNTSDAKRK 238
Query: 657 KAWEMICDVSRRD-----------FQKIY-DRLNVTLTERGESFYQKHMEQ-LVPYLEKK 703
I + + Q + + + G S +Q + PY E
Sbjct: 239 AELNEIAKICSKVSGEGAKSFYEACQLFWFIHAIINIESNGHSISPARFDQYMYPYYEND 298
Query: 704 GNLS 707
N++
Sbjct: 299 KNIT 302
Score = 29.4 bits (66), Expect = 3.3
Identities = 23/176 (13%), Positives = 45/176 (25%), Gaps = 32/176 (18%)
Query: 390 LIAHLQDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKR--AYQCVVALQRFDPDYK 447
+I +++ + P + F + + R +A D K
Sbjct: 179 IINEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNTSDAKRK 238
Query: 448 KAWEMICDVSRRD-----------FQKIY-DRLNVTLTERGESFYQKHMEQ-LVPYLEKK 494
I + + Q + + + G S +Q + PY E
Sbjct: 239 AELNEIAKICSKVSGEGAKSFYEACQLFWFIHAIINIESNGHSISPARFDQYMYPYYEND 298
Query: 495 G-----------------LLELDDGRKIMWGEDRGSIPMTIVKSDGGFTYDTSDLA 533
L +++ R + + G PM GG + D
Sbjct: 299 KNITDKFAQELIDCIWIKLNDINKVRDEISTKHFGGYPMYQNLIVGGQNSEGKDAT 354
>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 26.6 bits (59), Expect = 1.6
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 1050 RDLCLHHLCEYLYDISTAFSEFYDNCYC 1077
+D C+H C+Y+ ++ C C
Sbjct: 7 KDFCIHGECKYVKELRAPS------CIC 28
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 28.4 bits (62), Expect = 4.1
Identities = 20/146 (13%), Positives = 38/146 (26%), Gaps = 5/146 (3%)
Query: 362 TISRLL-EYLGHDVV----RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 416
T + L E + L GTQ G+ + D+
Sbjct: 17 TQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN 76
Query: 417 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 476
+ R L + + E ++ D + N ++
Sbjct: 77 NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNADALKKR 136
Query: 477 ESFYQKHMEQLVPYLEKKGLLELDDG 502
+ Y E +V + +K G+ D
Sbjct: 137 LAAYHAQTEPIVDFYKKTGIWAGVDA 162
Score = 27.6 bits (60), Expect = 6.9
Identities = 19/141 (13%), Positives = 36/141 (25%), Gaps = 5/141 (3%)
Query: 571 TISRLL-EYLGHDVV----RLNHVGDWGTQFGMLIAHLQDKFPDYLTKSPPIADLQAFYK 625
T + L E + L GTQ G+ + D+
Sbjct: 17 TQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN 76
Query: 626 ESKKRFDEDEIFKKRAYQCVVALQRFDPDYKKAWEMICDVSRRDFQKIYDRLNVTLTERG 685
+ R L + + E ++ D + N ++
Sbjct: 77 NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNADALKKR 136
Query: 686 ESFYQKHMEQLVPYLEKKGNL 706
+ Y E +V + +K G
Sbjct: 137 LAAYHAQTEPIVDFYKKTGIW 157
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor,
MarR {Escherichia coli [TaxId: 562]}
Length = 138
Score = 27.3 bits (60), Expect = 5.4
Identities = 8/56 (14%), Positives = 16/56 (28%)
Query: 446 YKKAWEMICDVSRRDFQKIYDRLNVTLTERGESFYQKHMEQLVPYLEKKGLLELDD 501
V R + V LT G + ++ + + L ++ L
Sbjct: 68 MLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLHQELTKNLTA 123
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 95
Score = 26.7 bits (59), Expect = 5.6
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 16/91 (17%)
Query: 388 GMLIAHL----QDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV------ 437
G IA + +++ DY++ + P + F R + A V
Sbjct: 4 GYWIAQVDVRDSERYKDYVSTAKPA--FERFGANFLARGGSVTELEGTARARNVVIEFPS 61
Query: 438 --ALQRF--DPDYKKAWEMICDVSRRDFQKI 464
P+Y+ A ++ +V+ + +
Sbjct: 62 VQHAIDCYNSPEYQAAAKIRQEVADAEMMIV 92
Score = 26.7 bits (59), Expect = 5.6
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 16/91 (17%)
Query: 597 GMLIAHL----QDKFPDYLTKSPPIADLQAFYKESKKRFDEDEIFKKRAYQCVV------ 646
G IA + +++ DY++ + P + F R + A V
Sbjct: 4 GYWIAQVDVRDSERYKDYVSTAKPA--FERFGANFLARGGSVTELEGTARARNVVIEFPS 61
Query: 647 --ALQRF--DPDYKKAWEMICDVSRRDFQKI 673
P+Y+ A ++ +V+ + +
Sbjct: 62 VQHAIDCYNSPEYQAAAKIRQEVADAEMMIV 92
>d1sw5a_ c.94.1.1 (A:) Osmoprotection protein ProX {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 270
Score = 27.9 bits (61), Expect = 6.3
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 564 ESTIIGDTISRLLEYLGHDVVRLNHVGDWGTQFGMLIAHLQDKFPDY 610
E I+ + I+ LLE G+ +G + L + + +Y
Sbjct: 12 EQYILANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVEY 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.397
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,215,544
Number of extensions: 210132
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 55
Length of query: 1119
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1024
Effective length of database: 1,103,246
Effective search space: 1129723904
Effective search space used: 1129723904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)