BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6788
         (61 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
          Length = 2946

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/29 (65%), Positives = 26/29 (89%)

Query: 31  LKFGVLIGLIEVGEVSNREVVNTILHLAI 59
           +KF VLIGLI+VGEVSNR++V T+L+L +
Sbjct: 72  MKFAVLIGLIQVGEVSNRDIVETVLNLLV 100


>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1
          Length = 2936

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/29 (65%), Positives = 26/29 (89%)

Query: 31 LKFGVLIGLIEVGEVSNREVVNTILHLAI 59
          +KF VLIGLI+VGEVSNR++V T+L+L +
Sbjct: 62 MKFAVLIGLIQVGEVSNRDIVETVLNLLV 90


>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein
          OS=Mus musculus GN=Lrba PE=1 SV=1
          Length = 2856

 Score = 41.6 bits (96), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 24/29 (82%)

Query: 31 LKFGVLIGLIEVGEVSNREVVNTILHLAI 59
          +KF VL GL+EVGEVSNR++V T+ +L +
Sbjct: 46 MKFAVLTGLVEVGEVSNRDIVETVFNLLV 74


>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein
          OS=Homo sapiens GN=LRBA PE=1 SV=4
          Length = 2863

 Score = 41.6 bits (96), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 24/29 (82%)

Query: 31 LKFGVLIGLIEVGEVSNREVVNTILHLAI 59
          +KF VL GL+EVGEVSNR++V T+ +L +
Sbjct: 46 MKFAVLTGLVEVGEVSNRDIVETVFNLLV 74


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.141    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,736,567
Number of Sequences: 539616
Number of extensions: 669553
Number of successful extensions: 1840
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1833
Number of HSP's gapped (non-prelim): 7
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)