Query psy6788
Match_columns 61
No_of_seqs 22 out of 24
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 18:24:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fqg_A Protein DIN1; hydrolase 35.7 6.7 0.00023 28.3 -0.3 28 7-34 9-36 (360)
2 1rtt_A Conserved hypothetical 16.7 49 0.0017 19.7 1.0 15 25-39 1-15 (193)
3 3nap_A Capsid protein; insect 16.7 17 0.00059 26.8 -1.2 37 3-39 195-233 (271)
4 3fqi_A Protein DOM3Z, DOM-3 ho 15.8 24 0.00081 26.1 -0.7 25 10-34 57-81 (417)
5 3qay_A Endolysin; amidase A/B 11.8 81 0.0028 19.8 1.1 13 37-49 141-153 (180)
6 1jwq_A N-acetylmuramoyl-L-alan 10.9 90 0.0031 19.7 1.1 13 37-49 138-150 (179)
7 3r8s_H 50S ribosomal protein L 10.8 57 0.0019 20.9 0.1 12 43-54 92-103 (149)
8 1div_A Ribosomal protein L9; r 10.4 59 0.002 20.8 0.1 12 43-54 91-102 (149)
9 2fb9_A D-alanine:D-alanine lig 10.2 1.3E+02 0.0044 19.6 1.6 18 30-51 3-20 (322)
10 3czx_A Putative N-acetylmuramo 9.7 87 0.003 19.7 0.7 12 38-49 142-153 (182)
No 1
>3fqg_A Protein DIN1; hydrolase, mRNA processing, nucleus, phosphoprotein, rRNA processing, transcription, transcription regulation; 2.00A {Schizosaccharomyces pombe} PDB: 3fqd_B
Probab=35.71 E-value=6.7 Score=28.30 Aligned_cols=28 Identities=18% Similarity=0.468 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCChHHHhhhccccceeeE
Q psy6788 7 KVPPVQFPDIKRPEDVVQMIMKDELKFG 34 (61)
Q Consensus 7 ~~~~~~~~dikrPeevv~m~~~d~~KFa 34 (61)
++.|..++.+|||.|++..|.+++.+|-
T Consensus 9 ~~~~~~~p~~~~P~eig~fS~d~~~~~~ 36 (360)
T 3fqg_A 9 DVPPAHVPPVSEPLEIACYSLSRDRELL 36 (360)
T ss_dssp GSCCCCCCCBCCCEEEEEEEECTTCCEE
T ss_pred cCCCCCCCCCCCCcEEEEEEECCCCCEe
Confidence 5677889999999999999999877763
No 2
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=16.73 E-value=49 Score=19.74 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=6.3
Q ss_pred hccccceeeEEEEEE
Q psy6788 25 MIMKDELKFGVLIGL 39 (61)
Q Consensus 25 m~~~d~~KFavLigL 39 (61)
|+|...||..++.|=
T Consensus 1 m~m~~~Mkilii~gS 15 (193)
T 1rtt_A 1 MSLSDDIKVLGISGS 15 (193)
T ss_dssp ------CEEEEEESC
T ss_pred CCCCCCceEEEEECC
Confidence 566677887777654
No 3
>3nap_A Capsid protein; insect cripavirus, icosahedral virus; 2.50A {Triatoma virus}
Probab=16.73 E-value=17 Score=26.76 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCCCCChHH--HhhhccccceeeEEEEEE
Q psy6788 3 GAESKVPPVQFPDIKRPED--VVQMIMKDELKFGVLIGL 39 (61)
Q Consensus 3 ~~e~~~~~~~~~dikrPee--vv~m~~~d~~KFavLigL 39 (61)
|-++++..|..-.+-.|+- .++++.+|.+.|..|+|-
T Consensus 195 Gnis~L~~~~~~~~Ss~t~n~~va~SAgDD~~FgfllG~ 233 (271)
T 3nap_A 195 GNISPLMPNVMYKITSNSSNILLGHSAADDFRFGFLLGA 233 (271)
T ss_dssp TTCCTTSCSCEEEEEESCSCEEEEEEECTTCEEEEECCC
T ss_pred CCccccccccceeecCCccceeeeeeccCCcceeeeccC
Confidence 4455555443333444443 689999999999999984
No 4
>3fqi_A Protein DOM3Z, DOM-3 homolog Z; hydrolase, protein binding; HET: EPE; 2.01A {Mus musculus} PDB: 3fqj_A*
Probab=15.83 E-value=24 Score=26.09 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=20.4
Q ss_pred CCCCCCCCChHHHhhhccccceeeE
Q psy6788 10 PVQFPDIKRPEDVVQMIMKDELKFG 34 (61)
Q Consensus 10 ~~~~~dikrPeevv~m~~~d~~KFa 34 (61)
.-+|+.+|||.|++..|.+++.+|-
T Consensus 57 ~~~fP~~~~P~eig~fS~d~~~~f~ 81 (417)
T 3fqi_A 57 SGPFPFYRRPSELGCFSLDAQRQYH 81 (417)
T ss_dssp CSSCCCBCCCEEEEEEEECTTCCEE
T ss_pred cCCCCCCCCCcEEEEEEeCCCCCEe
Confidence 3458999999999999998876663
No 5
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=11.77 E-value=81 Score=19.83 Aligned_cols=13 Identities=38% Similarity=0.207 Sum_probs=10.8
Q ss_pred EEEEEeeeeechh
Q psy6788 37 IGLIEVGEVSNRE 49 (61)
Q Consensus 37 igLiEvg~Vsnrd 49 (61)
.-|||.|-+||.+
T Consensus 141 avLvE~gFisN~~ 153 (180)
T 3qay_A 141 AVLIESFFCDNKE 153 (180)
T ss_dssp EEEEEEEETTCHH
T ss_pred EEEEEecccCCHH
Confidence 5689999999964
No 6
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=10.91 E-value=90 Score=19.67 Aligned_cols=13 Identities=46% Similarity=0.565 Sum_probs=10.8
Q ss_pred EEEEEeeeeechh
Q psy6788 37 IGLIEVGEVSNRE 49 (61)
Q Consensus 37 igLiEvg~Vsnrd 49 (61)
.-|||.|-+||.+
T Consensus 138 avLvE~gFisN~~ 150 (179)
T 1jwq_A 138 AVLLEVGYLSNAK 150 (179)
T ss_dssp EEEEEEEETTSHH
T ss_pred EEEEEecCCCCHH
Confidence 4589999999965
No 7
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=10.79 E-value=57 Score=20.89 Aligned_cols=12 Identities=17% Similarity=0.758 Sum_probs=10.0
Q ss_pred eeeechhhhhee
Q psy6788 43 GEVSNREVVNTI 54 (61)
Q Consensus 43 g~Vsnrdiv~TV 54 (61)
|.||++||++.+
T Consensus 92 GSVt~~dIa~al 103 (149)
T 3r8s_H 92 GSIGTRDIADAV 103 (149)
T ss_dssp EEECHHHHHHHH
T ss_pred cccCHHHHHHHH
Confidence 679999998864
No 8
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=10.45 E-value=59 Score=20.79 Aligned_cols=12 Identities=8% Similarity=0.697 Sum_probs=10.2
Q ss_pred eeeechhhhhee
Q psy6788 43 GEVSNREVVNTI 54 (61)
Q Consensus 43 g~Vsnrdiv~TV 54 (61)
|.||++||++.+
T Consensus 91 GSVt~~dIa~al 102 (149)
T 1div_A 91 GSITSKQIAESL 102 (149)
T ss_dssp EEECHHHHHHHH
T ss_pred eecCHHHHHHHH
Confidence 789999999864
No 9
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=10.20 E-value=1.3e+02 Score=19.61 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.5
Q ss_pred ceeeEEEEEEEEeeeeechhhh
Q psy6788 30 ELKFGVLIGLIEVGEVSNREVV 51 (61)
Q Consensus 30 ~~KFavLigLiEvg~Vsnrdiv 51 (61)
+||.+||.| |+=+.|||-
T Consensus 3 ~~~v~vl~g----g~s~E~~vS 20 (322)
T 2fb9_A 3 FMRVLLIAG----GVSPEHEVS 20 (322)
T ss_dssp CCCEEEEEE----CSSTTHHHH
T ss_pred CcEEEEEeC----CCchhHHHH
Confidence 689999998 877777763
No 10
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=9.74 E-value=87 Score=19.73 Aligned_cols=12 Identities=25% Similarity=-0.006 Sum_probs=10.5
Q ss_pred EEEEeeeeechh
Q psy6788 38 GLIEVGEVSNRE 49 (61)
Q Consensus 38 gLiEvg~Vsnrd 49 (61)
-|||.|-+||.+
T Consensus 142 vLvE~gFisN~~ 153 (182)
T 3czx_A 142 IVFEPFFISNDT 153 (182)
T ss_dssp EEEECSBTTCHH
T ss_pred EEEEeCCCCCHH
Confidence 789999999964
Done!