Query psy6788
Match_columns 61
No_of_seqs 22 out of 24
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 18:24:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6788.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6788hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2anua1 c.6.3.1 (A:5-233) Hypo 17.5 31 0.0023 18.8 1.7 22 17-38 19-40 (229)
2 d1m65a_ c.6.3.1 (A:) Hypotheti 16.6 32 0.0023 18.4 1.6 21 17-37 17-37 (244)
3 d1diva1 d.99.1.1 (A:56-149) Ri 15.4 16 0.0012 20.1 0.1 12 43-54 36-47 (94)
4 d2j01i1 d.99.1.1 (I:56-146) Ri 15.3 13 0.00095 20.4 -0.3 12 43-54 35-46 (91)
5 d1e4ea1 c.30.1.2 (A:2-131) D-a 14.8 41 0.003 18.8 1.8 10 29-38 1-10 (130)
6 d1p3ra_ b.55.1.2 (A:) Disabled 14.7 98 0.0071 16.9 3.9 36 17-52 3-39 (148)
7 d1nksa_ c.37.1.1 (A:) Adenylat 13.4 24 0.0017 18.3 0.4 14 31-44 1-14 (194)
8 d1hl9a2 c.1.8.11 (A:7-356) Put 10.5 55 0.004 21.0 1.6 21 18-38 100-120 (350)
9 d1xova2 c.56.5.6 (A:1-180) End 9.4 52 0.0038 19.2 1.1 13 38-50 138-150 (180)
10 d1jwqa_ c.56.5.6 (A:) N-acetyl 9.4 52 0.0038 18.5 1.1 13 37-49 138-150 (179)
No 1
>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]}
Probab=17.46 E-value=31 Score=18.83 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=19.0
Q ss_pred CChHHHhhhccccceeeEEEEE
Q psy6788 17 KRPEDVVQMIMKDELKFGVLIG 38 (61)
Q Consensus 17 krPeevv~m~~~d~~KFavLig 38 (61)
.+|+|+++.|....++|.+++=
T Consensus 19 ~t~~e~~~~A~~~Gld~iaiTD 40 (229)
T d2anua1 19 LPLGEVVDLFGKHGVDVVSITD 40 (229)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEeC
Confidence 5799999999999999988763
No 2
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}
Probab=16.63 E-value=32 Score=18.36 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=18.0
Q ss_pred CChHHHhhhccccceeeEEEE
Q psy6788 17 KRPEDVVQMIMKDELKFGVLI 37 (61)
Q Consensus 17 krPeevv~m~~~d~~KFavLi 37 (61)
.+|+|+++.|-+..+++.+++
T Consensus 17 ~~~~e~v~~A~~~Gl~~iaiT 37 (244)
T d1m65a_ 17 STLSDYIAQAKQKGIKLFAIT 37 (244)
T ss_dssp CCHHHHHHHHHHHTCCEEEEE
T ss_pred CCHHHHHHHHHHCCCCEEEEc
Confidence 479999999999999887765
No 3
>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=15.40 E-value=16 Score=20.13 Aligned_cols=12 Identities=8% Similarity=0.697 Sum_probs=10.1
Q ss_pred eeeechhhhhee
Q psy6788 43 GEVSNREVVNTI 54 (61)
Q Consensus 43 g~Vsnrdiv~TV 54 (61)
|.||++||++.+
T Consensus 36 GSVt~~dI~~~l 47 (94)
T d1diva1 36 GSITSKQIAESL 47 (94)
T ss_dssp EEECHHHHHHHH
T ss_pred ecccHHHHHHHH
Confidence 779999999865
No 4
>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus thermophilus [TaxId: 274]}
Probab=15.35 E-value=13 Score=20.43 Aligned_cols=12 Identities=17% Similarity=0.675 Sum_probs=9.7
Q ss_pred eeeechhhhhee
Q psy6788 43 GEVSNREVVNTI 54 (61)
Q Consensus 43 g~Vsnrdiv~TV 54 (61)
|-||++||++.+
T Consensus 35 GSVt~~dIa~~l 46 (91)
T d2j01i1 35 GSVTAKDIAEAL 46 (91)
T ss_dssp SCCCHHHHHHHH
T ss_pred cccCHHHHHHHH
Confidence 678999998864
No 5
>d1e4ea1 c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA, N-domain {Enterococcus faecium [TaxId: 1352]}
Probab=14.76 E-value=41 Score=18.78 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=6.8
Q ss_pred cceeeEEEEE
Q psy6788 29 DELKFGVLIG 38 (61)
Q Consensus 29 d~~KFavLig 38 (61)
++||.+||.|
T Consensus 1 ~K~kV~vl~G 10 (130)
T d1e4ea1 1 NRIKVAILFG 10 (130)
T ss_dssp CCEEEEEEEE
T ss_pred CCcEEEEEeC
Confidence 4677777766
No 6
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.67 E-value=98 Score=16.88 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=26.9
Q ss_pred CChHHHhhhccccceeeEE-EEEEEEeeeeechhhhh
Q psy6788 17 KRPEDVVQMIMKDELKFGV-LIGLIEVGEVSNREVVN 52 (61)
Q Consensus 17 krPeevv~m~~~d~~KFav-LigLiEvg~Vsnrdiv~ 52 (61)
|.+++..+--.+|...|.+ .+|-+||.+-...++++
T Consensus 3 ~~~~~~~~~~~~~gv~f~vkYLGs~~V~~~~G~~~~~ 39 (148)
T d1p3ra_ 3 KTDEYLLARFKGDGVKYKAKLIGIDDVPDARGDKMSQ 39 (148)
T ss_dssp CCHHHHHHHHSTTCEEEEEEEEEEEEESSSCCHHHHH
T ss_pred cchHHHHHhccCCCeEEEEEEEEEEEecCCCChHHHH
Confidence 5677777777788888866 68999998876666543
No 7
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=13.42 E-value=24 Score=18.29 Aligned_cols=14 Identities=36% Similarity=0.835 Sum_probs=10.3
Q ss_pred eeeEEEEEEEEeee
Q psy6788 31 LKFGVLIGLIEVGE 44 (61)
Q Consensus 31 ~KFavLigLiEvg~ 44 (61)
||++++.|.-=+|.
T Consensus 1 mkiivi~G~~GsGK 14 (194)
T d1nksa_ 1 MKIGIVTGIPGVGK 14 (194)
T ss_dssp CEEEEEEECTTSCH
T ss_pred CeEEEEECCCCCCH
Confidence 78888888765553
No 8
>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.52 E-value=55 Score=21.02 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=19.0
Q ss_pred ChHHHhhhccccceeeEEEEE
Q psy6788 18 RPEDVVQMIMKDELKFGVLIG 38 (61)
Q Consensus 18 rPeevv~m~~~d~~KFavLig 38 (61)
.|++-++++-+..||++||+.
T Consensus 100 Da~~Wv~~ak~aGaky~vlTa 120 (350)
T d1hl9a2 100 DPQEWADLFKKAGAKYVIPTT 120 (350)
T ss_dssp CHHHHHHHHHHTTCSEEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEEE
Confidence 589999999999999999974
No 9
>d1xova2 c.56.5.6 (A:1-180) Endolysin Ply, catalytic domain {Bacteriophage Psa [TaxId: 171618]}
Probab=9.44 E-value=52 Score=19.20 Aligned_cols=13 Identities=38% Similarity=0.314 Sum_probs=10.6
Q ss_pred EEEEeeeeechhh
Q psy6788 38 GLIEVGEVSNREV 50 (61)
Q Consensus 38 gLiEvg~Vsnrdi 50 (61)
-|+|.|-+||.+=
T Consensus 138 vLvE~gFisN~~d 150 (180)
T d1xova2 138 VLLEVCFVDRKED 150 (180)
T ss_dssp EEEEEEETTCHHH
T ss_pred EEEEecCcCCHHH
Confidence 3899999999753
No 10
>d1jwqa_ c.56.5.6 (A:) N-acetylmuramoyl-L-alanine amidase CwlV {Paenibacillus polymyxa [TaxId: 1406]}
Probab=9.43 E-value=52 Score=18.51 Aligned_cols=13 Identities=46% Similarity=0.565 Sum_probs=10.4
Q ss_pred EEEEEeeeeechh
Q psy6788 37 IGLIEVGEVSNRE 49 (61)
Q Consensus 37 igLiEvg~Vsnrd 49 (61)
.-|||.|-+||.+
T Consensus 138 avLvE~gFisN~~ 150 (179)
T d1jwqa_ 138 AVLLEVGYLSNAK 150 (179)
T ss_dssp EEEEEEEETTSHH
T ss_pred eEEEEeccCCCHH
Confidence 3489999999864
Done!