RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6788
         (61 letters)



>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
           1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
           1ket_A* 1kep_A*
          Length = 348

 Score = 24.8 bits (55), Expect = 1.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 43  GEVSNREVVNTILHL 57
           GE +N+EV+  IL  
Sbjct: 256 GEKNNKEVLELILEK 270


>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
           dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
           {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
          Length = 337

 Score = 24.4 bits (54), Expect = 2.5
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 43  GEVSNREVVNTILHL 57
            E++NRE+   +L  
Sbjct: 246 LELTNRELTGILLDS 260


>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
          autoinhibition, substituted aldamine, lyase; HET: PLP;
          1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
          1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
          Length = 452

 Score = 23.8 bits (51), Expect = 4.7
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 4  AESKVPPVQFPDIKRPEDVVQMIMKDELKF 33
            +     +FP  +  +DV   I+ DEL  
Sbjct: 9  ISTIAESKRFPLHEMRDDVAFQIINDELYL 38


>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic
           amino acid biosynthesis, open form, form B, domain
           movement, cyclase; HET: NAD; 2.20A {Staphylococcus
           aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
          Length = 354

 Score = 23.0 bits (50), Expect = 7.5
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 10/57 (17%)

Query: 10  PVQFPDIKRPEDVVQMIMKD------ELKFGVL---IGLIEVGEVSNREVVNTILHL 57
           P+        E + Q ++ D       ++  VL    G I V  V    + +    L
Sbjct: 294 PLDMITDLDFETLYQYMLSDKKNDKQGVQM-VLMRQFGDIVVQHVDQLTLQHACEQL 349


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.141    0.390 

Gapped
Lambda     K      H
   0.267   0.0543    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 925,276
Number of extensions: 43693
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 9
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)