RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6788
         (61 letters)



>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
           central and FMN domains {Azospirillum brasilense [TaxId:
           192]}
          Length = 771

 Score = 24.9 bits (54), Expect = 0.63
 Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 2/38 (5%)

Query: 2   EGAESKVPPVQFPDIKRPEDVVQMIMK-DELKFGVLIG 38
            G     PP    DI   ED+ Q+I    ++     + 
Sbjct: 539 PGVMLISPP-PHHDIYSIEDLAQLIYDLKQINPDAKVT 575


>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
          {Escherichia coli [TaxId: 562]}
          Length = 450

 Score = 23.3 bits (49), Expect = 2.2
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 2  EGAESKVPPVQFPDIKRPEDVVQMIMKDEL 31
          +   +     +FP  +  +DV   I+ DEL
Sbjct: 19 KSISTIAESKRFPLHEMRDDVAFQIINDEL 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.141    0.390 

Gapped
Lambda     K      H
   0.267   0.0471    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 218,700
Number of extensions: 7839
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 2
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)