BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6789
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition
Motif Resembles Histone H5
Length = 102
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 49 HRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
H KPP++Y LI A+++ LT+S IYQWI + FPYY +N RW+NS+RH+LS N
Sbjct: 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDC 60
Query: 107 FRKGVKASQ--GAGHLWNL 123
F K ++ G G W L
Sbjct: 61 FVKVARSPDKPGKGSYWAL 79
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
Myocyte Nuclear Factor
pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding Domain
Of Myocyte Nuclear Factor
Length = 101
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 51 KPPFTYTELIEQAL--KEKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
KPP++Y +LI QA+ + QLT+SGIY I++ +PYY D W+NS+RHNLS+N +F
Sbjct: 3 KPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 109 KGVKASQ--GAGHLWNL---SDMEPVEDA 132
K ++ + G G W + S+ + VE A
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASEAKLVEQA 91
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
Adipocyte- Transcription Factor Freac-11 (S12)
Length = 94
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
KPP++Y LI A++ + ++T++GIYQ+I +RFP+Y +N W+NS+RHNLS+N F
Sbjct: 4 KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63
Query: 109 KGVKASQ--GAGHLWNL 123
K + + G G W L
Sbjct: 64 KVPRDDKKPGKGSYWTL 80
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 69.7 bits (169), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
+PPFTY LI QA+ E + QLT++ IY W + FPY+ +N WKN+VRHNLS++ +F
Sbjct: 4 RPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFPYFRRNAATWKNAVRHNLSLHKYF- 62
Query: 109 KGVKASQGAGHLWNLSDME 127
V+ G +W + ++E
Sbjct: 63 --VRVENVKGAVWTVDEVE 79
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
Length = 111
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
KPP++Y +LI QA+ QLT++GIY I++ +PYY D W+NS+RHNLS+N +F
Sbjct: 16 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 75
Query: 109 KGVKASQ--GAGHLWNL 123
K ++ + G G W +
Sbjct: 76 KVPRSQEEPGKGSFWRI 92
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
KPP++Y +LI QA+ QLT++GIY I++ +PYY D W+NS+RHNLS+N +F
Sbjct: 3 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 109 KGVKASQ--GAGHLWNL 123
K ++ + G G W +
Sbjct: 63 KVPRSQEEPGKGSFWRI 79
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna.
pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna
Length = 93
Score = 68.2 bits (165), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
+PPFTY LI QA+ E QLT++ IY W + F Y+ +N WKN+VRHNLS++ F
Sbjct: 3 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCF- 61
Query: 109 KGVKASQGAGHLWNLSDME 127
V+ G +W + ++E
Sbjct: 62 --VRVENVKGAVWTVDEVE 78
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20
Structures
Length = 109
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 51 KPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
KPP++Y LI A+ + Q LT+SGI ++IS RFPYY + W+NS+RHNLS+N F
Sbjct: 3 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 62
Query: 109 KGVK--ASQGAGHLWNL 123
K + + G G+ W L
Sbjct: 63 KIPREPGNPGKGNYWTL 79
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
Length = 97
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 51 KPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
KPP++Y LI A+ + Q LT+SGI ++IS RFPYY + W+NS+RHNLS+N F
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 109 KGVK--ASQGAGHLWNL 123
K + + G G+ W L
Sbjct: 62 KIPREPGNPGKGNYWTL 78
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
Length = 82
Score = 57.8 bits (138), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
+PPFTY LI A+ E + Q T++ IY W + F ++ + WKN++RHNLS++ F
Sbjct: 2 RPPFTYATLIRWAILEAPEKQRTLNEIYHWFTRMFAFFRNHPATWKNAIRHNLSLHKCF- 60
Query: 109 KGVKASQGAGHLWNLSDME 127
V+ G +W + ++E
Sbjct: 61 --VRVESEKGAVWTVDELE 77
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
Length = 142
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 51 KPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQ-NDDRWKNSVRHNLSINPHF 107
+PP++Y +I+ A+ E+ ++T+ IY WI + FPY+ WKNS+RHNLS++ F
Sbjct: 18 RPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMF 77
Query: 108 RKGVKASQGAGHLWNL 123
+ A+ G W +
Sbjct: 78 VRETSAN-GKVSFWTI 92
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 55 TYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDR-----WKNSVRHNLSINPHF 107
+Y ELI QA++ + +LT++ IY+W+ PY+ D WKNS+RHNLS++ F
Sbjct: 44 SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 103
Query: 108 RKGVKASQGAGHLWNL 123
K + G W L
Sbjct: 104 IKVHNEATGKSSWWML 119
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound
To Dna
Length = 110
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 55 TYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDR-----WKNSVRHNLSINPHF 107
+Y ELI QA++ + +LT++ IY+W+ PY+ D WKNS+RHNLS++ F
Sbjct: 28 SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 87
Query: 108 RKGVKASQGAGHLWNL 123
K + G W L
Sbjct: 88 IKVHNEATGKSSWWML 103
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
Length = 100
Score = 51.6 bits (122), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 51 KPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
KPP++Y LI A+++ +LT++ I +++ +FP++ + W+NSVRHNLS+N F
Sbjct: 2 KPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFV 61
Query: 109 K 109
K
Sbjct: 62 K 62
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
Length = 117
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 54 FTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDR-----WKNSVRHNLSINPH 106
+Y +LI +A++ + +LT+S IY+W+ + PY+ D WKNS+RHNLS++
Sbjct: 14 LSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSK 73
Query: 107 FRKGVKASQGAGHLWNL 123
F + G W L
Sbjct: 74 FIRVQNEGTGKSSWWML 90
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
Length = 100
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 54 FTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDR-----WKNSVRHNLSINPH 106
+Y +LI +A++ + +LT+S IY+W+ + PY+ D WKNS+RHNLS++
Sbjct: 14 LSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSK 73
Query: 107 FRKGVKASQGAGHLWNL 123
F + G W L
Sbjct: 74 FIRVQNEGTGKSSWWML 90
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
Length = 97
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 54 FTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDR-----WKNSVRHNLSINPH 106
+Y +LI +A++ +LT+S IY+W+ PY+ D WKNS+RHNLS++
Sbjct: 4 LSYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSR 63
Query: 107 FRKGVKASQGAGHLW 121
F + G W
Sbjct: 64 FMRVQNEGTGKSSWW 78
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
Length = 103
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 54 FTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDR-----WKNSVRHNLSINPH 106
+Y +LI +A++ +LT+S IY+W+ PY+ D WKNS+RHNLS++
Sbjct: 12 LSYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSR 71
Query: 107 FRKGVKASQGAGHLW 121
F + G W
Sbjct: 72 FMRVQNEGTGKSSWW 86
>pdb|3Q4G|A Chain A, Structure Of Nad Synthetase From Vibrio Cholerae
pdb|3Q4G|B Chain B, Structure Of Nad Synthetase From Vibrio Cholerae
Length = 279
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 55 TYTELIEQALKEKHQLTVSGIYQWISERFPYYNQNDDRWK----NSVRHNLSINPHFRKG 110
T L + A++E +Q + YQ+I+ R PY Q D+ + +R S++ + + G
Sbjct: 55 TCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQKDEDEAQLALSFIRPTHSVSVNIKAG 114
Query: 111 VKASQGAGH--LWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSE---------WGDDYS 159
V A H L N + + P D +K ++ K +K + E G D+S
Sbjct: 115 VDGLHAASHHALAN-TGLIP-SDPAKVDFIKGNVKARARXVAQYEIAGYVGGLVLGTDHS 172
Query: 160 GQNST 164
+N T
Sbjct: 173 AENIT 177
>pdb|3FOT|A Chain A, Structural And Functional Characterization Of Tri3
Trichothecene 15-O- Acetyltransferase From Fusarium
Sporotrichioides
pdb|3FP0|A Chain A, Structural And Functional Characterization Of Tri3
Trichothecene 15-O-Acetyltransferase From Fusarium
Sporotrichioides
Length = 519
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 195 FEVYSQESKTFPYEECKDVLYIQSNDNVLYTPHEDHKLYHNDNVLYTPGEDHKLYQYEP 253
FE +K P+E + L+I N + PHE + +NVL D + Q P
Sbjct: 416 FEASYLHAKPIPFEGEANPLFISDGINERFIPHEIKQTATGENVLSVESIDFVVNQSLP 474
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,211,282
Number of Sequences: 62578
Number of extensions: 492098
Number of successful extensions: 797
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 37
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)