Query psy6789
Match_columns 331
No_of_seqs 190 out of 756
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 18:24:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3563|consensus 100.0 9.4E-53 2E-57 407.0 12.6 223 45-278 167-417 (454)
2 cd00059 FH Forkhead (FH), also 100.0 2.8E-35 6.1E-40 232.9 6.7 74 51-124 1-78 (78)
3 PF00250 Fork_head: Fork head 100.0 1.5E-34 3.4E-39 236.2 0.6 80 51-130 1-84 (96)
4 smart00339 FH FORKHEAD. FORKHE 100.0 3.3E-33 7.1E-38 225.7 6.5 79 51-129 1-83 (89)
5 KOG2294|consensus 100.0 6.5E-31 1.4E-35 257.6 -2.0 95 47-141 126-226 (454)
6 KOG3562|consensus 100.0 1.1E-29 2.4E-34 234.3 3.9 87 47-133 9-101 (277)
7 KOG4385|consensus 99.8 1.8E-22 3.8E-27 202.2 -0.6 76 48-126 365-442 (581)
8 COG5025 Transcription factor o 99.8 1.2E-19 2.6E-24 188.0 2.7 96 45-140 331-430 (610)
9 COG5025 Transcription factor o 99.3 2.1E-13 4.5E-18 141.9 -1.4 86 46-131 81-170 (610)
10 PF09354 HNF_C: HNF3 C-termina 98.8 6.2E-10 1.3E-14 86.1 0.2 26 250-277 1-26 (65)
11 PF00538 Linker_histone: linke 94.3 0.044 9.6E-07 42.8 3.1 33 51-85 2-37 (77)
12 smart00526 H15 Domain in histo 92.6 0.17 3.7E-06 38.2 3.8 30 55-84 6-38 (66)
13 cd00073 H15 linker histone 1 a 91.0 0.29 6.4E-06 39.3 3.8 32 55-86 6-40 (88)
14 KOG4012|consensus 83.7 3.2 6.9E-05 40.0 6.6 71 45-125 38-116 (243)
15 PF05066 HARE-HTH: HB1, ASXL, 80.5 1.4 3.1E-05 33.6 2.4 57 54-111 1-63 (72)
16 COG1768 Predicted phosphohydro 41.7 9.5 0.00021 36.0 0.3 39 281-329 21-59 (230)
17 PF10826 DUF2551: Protein of u 38.0 30 0.00065 28.5 2.6 26 60-85 12-41 (83)
18 KOG1924|consensus 32.1 2.2E+02 0.0047 32.5 8.6 18 47-66 417-434 (1102)
19 COG2958 Uncharacterized protei 29.2 64 0.0014 32.0 3.7 59 55-113 6-77 (307)
20 PF14338 Mrr_N: Mrr N-terminal 28.7 78 0.0017 25.2 3.6 68 55-125 1-82 (92)
21 PF12872 OST-HTH: OST-HTH/LOTU 25.0 62 0.0013 24.1 2.3 52 55-107 5-61 (74)
22 PF10264 Stork_head: Winged he 24.3 97 0.0021 25.3 3.3 32 56-87 12-47 (80)
23 KOG0995|consensus 22.0 22 0.00047 38.3 -1.0 42 247-294 86-127 (581)
24 KOG1924|consensus 20.8 4.4E+02 0.0096 30.3 8.4 6 239-244 612-617 (1102)
No 1
>KOG3563|consensus
Probab=100.00 E-value=9.4e-53 Score=407.01 Aligned_cols=223 Identities=28% Similarity=0.391 Sum_probs=154.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccC--CCCCcce
Q psy6789 45 HAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHL 120 (331)
Q Consensus 45 ~~~~~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~--~~GKG~~ 120 (331)
..-++.||||||+.||+|||+. .++|||+|||+||++.|||||.+.+.|||||||.||+|+||+||.|. -+|||+|
T Consensus 167 RsY~haKPPYSYISLITMAIQ~~pskmLTLSEIYqwIMDLFPyYrqNQQRWQNSIRHSLSFNDCFVKVaRSPDKPGKGSf 246 (454)
T KOG3563|consen 167 RSYTHAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSF 246 (454)
T ss_pred ccccCCCCChhHHHHHHHHHHhCCccceeHHHHHHHHHHhhhHhhhhHHHHHhhhhhhccccceeeeccCCCCCCCCccc
Confidence 3457889999999999999986 79999999999999999999999999999999999999999999995 5899999
Q ss_pred EeecCC--CchhhhhhhhhhhhhhhhhhhccC-CCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy6789 121 WNLSDM--EPVEDASKSNWKKNRLKTYLESLQ-PSEWGDDYSGQ--------NSTETPAPSMETMPQPQPQPLNTMSLAH 189 (331)
Q Consensus 121 Wtl~~~--~~~e~~~~~~~kr~R~~~~~~s~~-P~~~g~~~sg~--------~s~e~paps~~s~P~p~p~Pl~t~S~a~ 189 (331)
|||+++ ...|+++..+|+ |+|..... +...+.+.++. .+.+..+-.+...+ .+.|+++ .
T Consensus 247 WTLHpdsGNMFENGCYLRRQ----KRFK~ekk~~~~~~~gas~s~~~~~~~~~k~~~~~~~~t~p~--~~sp~Ga----p 316 (454)
T KOG3563|consen 247 WTLHPDSGNMFENGCYLRRQ----KRFKCEKKEASKGGSGASGSGLNGTGGGPKSTTDAATATSPP--QPSPAGA----P 316 (454)
T ss_pred eeecCCcCcccccchhehhh----hhhhhhhhhccccCCCCccccccccCCCcccccCcccCCCCC--CCCCCCC----C
Confidence 999985 456776654433 33322222 11222222211 11111111111112 2222222 1
Q ss_pred CCCCCCcCCCcccc---CCCccccccccccccCCCcc----------cCCCCCCccCCCCCcCCCCCCCCcccCCCcchh
Q psy6789 190 DPLQPFEVYSQESK---TFPYEECKDVLYIQSNDNVL----------YTPHEDHKLYHNDNVLYTPGEDHKLYQYEPSKN 256 (331)
Q Consensus 190 ~P~~p~~~~~q~~k---~~P~~~~k~~~~~~~~~~~~----------~~p~~~h~l~~~~~~~hlk~d~hy~fn~pfsin 256 (331)
.|..-.++..++++ +.--.+|+-+++....+... +....-|.+.+|..++|||.|+||+||||||||
T Consensus 317 ap~~~ae~~~~~ha~~a~~ga~~l~~~pas~t~~~~~~~~pg~~~s~~~~~~~~~~~~h~sq~~lk~~~~Yafnhpfsin 396 (454)
T KOG3563|consen 317 APSPEAEPKEGLHAVDATGGALELGLTPASSTPPPTGLSQPGSVASSAATLGAHGLAPHTSQAHLKLDPHYAFNHPFSIN 396 (454)
T ss_pred CCCcccchhhhhhhhhhcccccccCCCCcccCCCCcCCCCcchhhhhhhccCCCcCCCCccccccccCCCccccCchhhh
Confidence 22222333334444 34445566555555544432 233333778888888999999999999999999
Q ss_pred hhhhcccCCcceeeccccchhh
Q psy6789 257 LIMAAYDGGQEKVEIFASDTIS 278 (331)
Q Consensus 257 nlmss~~~qq~k~d~ka~~~~~ 278 (331)
|||++++ |+|||||||-|+.+
T Consensus 397 nlmss~q-~~~kld~k~Y~~~~ 417 (454)
T KOG3563|consen 397 NLMSSSQ-QAHKLDVKAYEQTS 417 (454)
T ss_pred hhccccc-cccccchhhhhhhc
Confidence 9999999 88999999988764
No 2
>cd00059 FH Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.
Probab=100.00 E-value=2.8e-35 Score=232.85 Aligned_cols=74 Identities=45% Similarity=0.955 Sum_probs=71.6
Q ss_pred CCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccC--CCCCcceEeec
Q psy6789 51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNLS 124 (331)
Q Consensus 51 KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~--~~GKG~~Wtl~ 124 (331)
||||||++||++||++ +++|||+|||+||+++|||||.++.|||||||||||+|+||+||+|+ +.|||+||+||
T Consensus 1 kP~~sY~~LI~~Ai~~sp~~~lTL~eIy~~I~~~~pyyr~~~~gWknSIRHnLS~n~~F~kv~r~~~~~gkg~~W~i~ 78 (78)
T cd00059 1 KPPYSYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFVKVPREPDEPGKGSYWTLD 78 (78)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeeHHHHHHHHHHhCCccccCCCCCccceeEecccccceEECCCCCCCCCCCCeeeeC
Confidence 8999999999999986 79999999999999999999999999999999999999999999997 78999999996
No 3
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors []. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
Probab=100.00 E-value=1.5e-34 Score=236.17 Aligned_cols=80 Identities=44% Similarity=0.869 Sum_probs=71.9
Q ss_pred CCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCcc--CCCCCcceEeecCC
Q psy6789 51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNLSDM 126 (331)
Q Consensus 51 KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r--~~~GKG~~Wtl~~~ 126 (331)
||||||++||++||++ +++|||+|||+||+++||||+.+.++||||||||||+|+||+||++ +..|||++|+|+++
T Consensus 1 KPp~sY~~LI~~Ai~~sp~~~Ltl~eIy~~i~~~~pyyr~~~~~WknSIRHnLS~~~~F~kv~~~~~~~gkg~~W~i~~~ 80 (96)
T PF00250_consen 1 KPPYSYATLIAMAILSSPDKRLTLSEIYEWIEENFPYYRDASKGWKNSIRHNLSLNKCFVKVPRDPSEPGKGSYWTIDPE 80 (96)
T ss_dssp -SSS-HHHHHHHHHHTSTTSEBEHHHHHHHHHHHCGHHHCTHCHHHHHHHHHHHHSTTEEEESCCTSSSSSSEEEEE-CT
T ss_pred CCCCcHHHHHHHHHHhCCCCCccHHHHHHHHHHhhccccccchhhhhHHhhhccccceeeecCcCCCCCCCceeEEeCHH
Confidence 8999999999999986 7999999999999999999999999999999999999999999999 46899999999997
Q ss_pred Cchh
Q psy6789 127 EPVE 130 (331)
Q Consensus 127 ~~~e 130 (331)
+..+
T Consensus 81 ~~~~ 84 (96)
T PF00250_consen 81 AIEE 84 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 4
>smart00339 FH FORKHEAD. FORKHEAD, also known as a "winged helix"
Probab=99.98 E-value=3.3e-33 Score=225.68 Aligned_cols=79 Identities=43% Similarity=0.864 Sum_probs=74.1
Q ss_pred CCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccC--CCCCcceEeecCC
Q psy6789 51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNLSDM 126 (331)
Q Consensus 51 KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~--~~GKG~~Wtl~~~ 126 (331)
||||||++||++||.+ +++|||+|||+||+++||||+.+.+|||||||||||+|+||+|+++. ++|||++|+|+++
T Consensus 1 kP~~sY~~lI~~ai~~sp~~~ltl~~Iy~~I~~~~pyy~~~~~~WknSIRHnLS~n~~F~kv~~~~~~~gkg~~W~i~~~ 80 (89)
T smart00339 1 KPPYSYIALIAMAILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCFVKVPREGDRPGKGSYWTLDPD 80 (89)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeeHHHHHHHHHHhCchhhcCccccccccccccchhhceeecCcCCCCCCCCCEEEECcc
Confidence 8999999999999986 79999999999999999999999999999999999999999999984 5699999999997
Q ss_pred Cch
Q psy6789 127 EPV 129 (331)
Q Consensus 127 ~~~ 129 (331)
+..
T Consensus 81 ~~~ 83 (89)
T smart00339 81 AEN 83 (89)
T ss_pred HHH
Confidence 543
No 5
>KOG2294|consensus
Probab=99.96 E-value=6.5e-31 Score=257.57 Aligned_cols=95 Identities=36% Similarity=0.707 Sum_probs=81.3
Q ss_pred CCCCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHh-cCCCCCCCC-cccccccccccccccccccCccC--CCCCcce
Q psy6789 47 KTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISE-RFPYYNQND-DRWKNSVRHNLSINPHFRKGVKA--SQGAGHL 120 (331)
Q Consensus 47 ~~~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~-~fPyyr~~~-~gWkNSIRHNLSlnk~F~Kv~r~--~~GKG~~ 120 (331)
+...||||||++||+|||+. +++|||+|||+||.. +|||||+++ .|||||||||||||+||+||+|+ .+|||+|
T Consensus 126 ~~~~kpp~SY~~LI~mAI~~Sp~krLtLs~Iy~~i~~~~fpyyr~~~~~gWqNSIRHNLSLn~cF~Kvpr~~~~~gKg~~ 205 (454)
T KOG2294|consen 126 GAGVKPPYSYSGLIAMAIRLSPGKRLTLGGIYFYILLEHFPYYRDANMPGWKNSIRHNLSLNKCFVKVPRERGRPGKGNY 205 (454)
T ss_pred CCCcCCccccccccccccccCCCcceeecCeeEEEEeccccccccCCCccchhhcccccccccCccccCCcccCCCCCCc
Confidence 45789999999999999985 899999999999995 999999999 99999999999999999999996 3699999
Q ss_pred EeecCCCchhhhhhhhhhhhh
Q psy6789 121 WNLSDMEPVEDASKSNWKKNR 141 (331)
Q Consensus 121 Wtl~~~~~~e~~~~~~~kr~R 141 (331)
|+||++...+.+..+.++|+|
T Consensus 206 W~ldP~~~~~~~~~g~~~rr~ 226 (454)
T KOG2294|consen 206 WTLDPDDENNMFDNGSFRRRR 226 (454)
T ss_pred cccCcchhccccccccccccc
Confidence 999996443344434444433
No 6
>KOG3562|consensus
Probab=99.95 E-value=1.1e-29 Score=234.32 Aligned_cols=87 Identities=39% Similarity=0.761 Sum_probs=79.1
Q ss_pred CCCCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccC--CCCCcceEe
Q psy6789 47 KTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWN 122 (331)
Q Consensus 47 ~~~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~--~~GKG~~Wt 122 (331)
-.++||||||+.|.+|||+. ++.|.|+|||+||+++|||||.+.+.||||+|||||+|+||+||+|. .+|||+||+
T Consensus 9 Y~dQKPPYSYIsLTaMAI~~SpekmLPLseIYkfImDrFPfYRkNTQrWQNSLRHNLSFNDCFIKiPRr~drpGKGsyWa 88 (277)
T KOG3562|consen 9 YGDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPFYRKNTQRWQNSLRHNLSFNDCFIKIPRRPDRPGKGSYWA 88 (277)
T ss_pred ccccCCCceeeehhhHHhhcChhhcCcHHHHHHHHHhhCchhhhchHHHHHHhhccccccceeeecCCCCCCCCCcccee
Confidence 35789999999999999986 89999999999999999999999999999999999999999999995 689999999
Q ss_pred ecCCC--chhhhh
Q psy6789 123 LSDME--PVEDAS 133 (331)
Q Consensus 123 l~~~~--~~e~~~ 133 (331)
|++.+ ..|++.
T Consensus 89 lHP~a~dMFENGS 101 (277)
T KOG3562|consen 89 LHPSAFDMFENGS 101 (277)
T ss_pred eccchhhhcccch
Confidence 99964 344443
No 7
>KOG4385|consensus
Probab=99.84 E-value=1.8e-22 Score=202.22 Aligned_cols=76 Identities=41% Similarity=0.847 Sum_probs=72.1
Q ss_pred CCCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccCCCCCcceEeecC
Q psy6789 48 THRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLSD 125 (331)
Q Consensus 48 ~~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~~~GKG~~Wtl~~ 125 (331)
.+.||||+|+.||.+||.+ +++|||+|||.|+.+.|.|||.+...|||+||||||++|||++|+. -||..|++|+
T Consensus 365 ~dvRPPfTYAsLIRqAIlESpdkQLTLNEIY~WFTrtFAYFRRNaATWKnAVRHNLSLHKCF~RVEn---vkgavwtvDe 441 (581)
T KOG4385|consen 365 ADVRPPFTYASLIRQAILESPDKQLTLNEIYNWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN---VKGAVWTVDE 441 (581)
T ss_pred cccCCchhHHHHHHHHHhcCchhhccHHHHHHHHHHHHHHHhccchhHhHHHhhhhHHHHHHHHHHH---Hhcceeeeeh
Confidence 5679999999999999986 8999999999999999999999999999999999999999999987 4999999997
Q ss_pred C
Q psy6789 126 M 126 (331)
Q Consensus 126 ~ 126 (331)
.
T Consensus 442 ~ 442 (581)
T KOG4385|consen 442 R 442 (581)
T ss_pred h
Confidence 4
No 8
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=99.76 E-value=1.2e-19 Score=187.96 Aligned_cols=96 Identities=36% Similarity=0.684 Sum_probs=86.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccC--CCCCcce
Q psy6789 45 HAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHL 120 (331)
Q Consensus 45 ~~~~~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~--~~GKG~~ 120 (331)
..+...||+++|+.||++||.. .++|+|++||.||..+|||||.+..+|+||||||||+|++|.||+++ .+|||+|
T Consensus 331 ~~~~~~kP~~sya~~iT~ail~s~~~kmsls~Iy~~i~s~~pyYr~~p~~w~nSiRhnlSlNksf~kvP~sa~~pGKg~f 410 (610)
T COG5025 331 DVNRTSKPAFSYANSITQAILSSPSGKMTLSEIYSWISSNLPYYRHKPTAWQNSIRHNLSLNKSFEKVPRSASQPGKGCF 410 (610)
T ss_pred ccccCccCCcchhhhhHHHhhcCcccccccccccccccccchhhccCCcccCchhhhhhhhccccccCCCCcCCCCCccc
Confidence 3456789999999999999986 78999999999999999999999999999999999999999999996 6899999
Q ss_pred EeecCCCchhhhhhhhhhhh
Q psy6789 121 WNLSDMEPVEDASKSNWKKN 140 (331)
Q Consensus 121 Wtl~~~~~~e~~~~~~~kr~ 140 (331)
|.++.++..+++.++.+++.
T Consensus 411 w~i~~s~~~~~~sk~~~~s~ 430 (610)
T COG5025 411 WKIDYSYIYEKESKRNPRSP 430 (610)
T ss_pred CccChhhhhhhcccccccCc
Confidence 99999888888766554433
No 9
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=99.30 E-value=2.1e-13 Score=141.94 Aligned_cols=86 Identities=35% Similarity=0.597 Sum_probs=77.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccC--CCCCcceE
Q psy6789 46 AKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLW 121 (331)
Q Consensus 46 ~~~~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~--~~GKG~~W 121 (331)
..+.-+|||+|+.+|.+||.+ +++|||..||.||-..|.||.....+|+|||||||++|+.|.|+.+. ..|||.||
T Consensus 81 ~~t~~v~~~s~a~gr~~~il~s~~~~lt~s~~~~~~~~~~~~~~k~~~~~~~sIr~Nls~~~a~~~i~g~~g~~~~g~~~ 160 (610)
T COG5025 81 NWTYYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIRHNLSLNDAFIKIEGRNGAKVKGHFW 160 (610)
T ss_pred CcccccCCeeeeeccccccccCcccCCcccceeeeeeecccccccccchhhhhhhcccccCceEEEEeccCCccccceee
Confidence 457789999999999999986 89999999999999999999999999999999999999999999875 46899999
Q ss_pred eecCCCchhh
Q psy6789 122 NLSDMEPVED 131 (331)
Q Consensus 122 tl~~~~~~e~ 131 (331)
.|.++.....
T Consensus 161 ~igP~~~~~~ 170 (610)
T COG5025 161 SIGPGHETQF 170 (610)
T ss_pred ccCCCcccee
Confidence 9999744333
No 10
>PF09354 HNF_C: HNF3 C-terminal domain; InterPro: IPR018533 This presumed domain is found in the C-terminal region of Hepatocyte Nuclear Factor 3 alpha and beta chains. Its specific function is uncertain. The N-terminal region of this presumed domain contains an EH1 (engrailed homology 1) motif, that is characterised by the FxIxxIL sequence [].
Probab=98.83 E-value=6.2e-10 Score=86.10 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.3
Q ss_pred CCCcchhhhhhcccCCcceeeccccchh
Q psy6789 250 QYEPSKNLIMAAYDGGQEKVEIFASDTI 277 (331)
Q Consensus 250 n~pfsinnlmss~~~qq~k~d~ka~~~~ 277 (331)
||||||||||++++ |||+||||-|..
T Consensus 1 nHPFSI~nLms~eq--q~k~dlK~Ye~~ 26 (65)
T PF09354_consen 1 NHPFSINNLMSSEQ--QHKMDLKMYEQM 26 (65)
T ss_pred CCCcchhhhccccc--ccchhHHHHHHH
Confidence 89999999996665 499999998765
No 11
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=94.28 E-value=0.044 Score=42.79 Aligned_cols=33 Identities=24% Similarity=0.645 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHHhc---CCCCCHHHHHHHHHhcCCC
Q psy6789 51 KPPFTYTELIEQALKE---KHQLTVSGIYQWISERFPY 85 (331)
Q Consensus 51 KPPySYa~LI~~AI~~---~krLTL~eIY~~I~~~fPy 85 (331)
.|| |..||.+||.+ .+..++..|..||+++|+.
T Consensus 2 hP~--y~~mI~eAI~~l~er~GsS~~aI~kyI~~~y~~ 37 (77)
T PF00538_consen 2 HPP--YSDMILEAIKALKERKGSSLQAIKKYIKAKYKV 37 (77)
T ss_dssp SSC--HHHHHHHHHHHCCSSSSEEHHHHHHHHHHHSSC
T ss_pred CCC--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCc
Confidence 355 99999999975 4789999999999999965
No 12
>smart00526 H15 Domain in histone families 1 and 5.
Probab=92.59 E-value=0.17 Score=38.21 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=26.8
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHhcCC
Q psy6789 55 TYTELIEQALKE---KHQLTVSGIYQWISERFP 84 (331)
Q Consensus 55 SYa~LI~~AI~~---~krLTL~eIY~~I~~~fP 84 (331)
+|..||..||.. .+..++..|..||+.+|.
T Consensus 6 ~~~~mI~eAI~~l~er~GsS~~aI~kyi~~~~~ 38 (66)
T smart00526 6 PYSEMITEAISALKERKGSSLQAIKKYIEANYK 38 (66)
T ss_pred CHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCC
Confidence 599999999975 477999999999999965
No 13
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber
Probab=91.03 E-value=0.29 Score=39.31 Aligned_cols=32 Identities=19% Similarity=0.502 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHhcCCCC
Q psy6789 55 TYTELIEQALKE---KHQLTVSGIYQWISERFPYY 86 (331)
Q Consensus 55 SYa~LI~~AI~~---~krLTL~eIY~~I~~~fPyy 86 (331)
+|..||.+||.. .+..++..|..||+.+|+.-
T Consensus 6 ~y~~MI~eAI~~l~er~GsS~~aI~kyI~~~y~~~ 40 (88)
T cd00073 6 PYSEMVTEAIKALKERKGSSLQAIKKYIEAKYKVD 40 (88)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCCcc
Confidence 599999999975 57899999999999998753
No 14
>KOG4012|consensus
Probab=83.73 E-value=3.2 Score=39.97 Aligned_cols=71 Identities=21% Similarity=0.419 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhc---CCCCCHHHHHHHHHhcCCCCCCCCccccccccccccccc-----ccccCccCCCC
Q psy6789 45 HAKTHRKPPFTYTELIEQALKE---KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINP-----HFRKGVKASQG 116 (331)
Q Consensus 45 ~~~~~~KPPySYa~LI~~AI~~---~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk-----~F~Kv~r~~~G 116 (331)
.......|+ |+.||..||.. .....+.-|+.||..+|+-|.-.. |--|.+++|+. .|+++ .|
T Consensus 38 ~k~~a~~P~--~~~mi~eAi~a~keR~GsS~aAikK~i~~~Y~g~~v~k----~n~~lk~alK~~v~~g~l~Qt----kG 107 (243)
T KOG4012|consen 38 VKKKAAHPP--YSEMITEAISALKERKGSSLAAIKKYIAANYPGDDVEK----NNSRLKLALKKGVSKGVLVQT----KG 107 (243)
T ss_pred cccccCCCc--HHHHHHHHHHHhhhcccchHHHHHHHHhhcCccchhhh----hhHHHHHHHHhhhccCceeee----cc
Confidence 334455666 99999999975 578999999999999998775432 12355555543 33332 37
Q ss_pred CcceEeecC
Q psy6789 117 AGHLWNLSD 125 (331)
Q Consensus 117 KG~~Wtl~~ 125 (331)
.|.-|....
T Consensus 108 ~GAsGsFk~ 116 (243)
T KOG4012|consen 108 TGASGSFKL 116 (243)
T ss_pred CCccccccc
Confidence 777776654
No 15
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=80.51 E-value=1.4 Score=33.61 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHhc-CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccc-----cccccccCc
Q psy6789 54 FTYTELIEQALKE-KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLS-----INPHFRKGV 111 (331)
Q Consensus 54 ySYa~LI~~AI~~-~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLS-----lnk~F~Kv~ 111 (331)
+||..++...|++ ++.|+.+||++.|++.--| ...++...++|+-.|. .+..|+++.
T Consensus 1 mt~~eaa~~vL~~~~~pm~~~eI~~~i~~~~~~-~~~~k~p~~~i~a~ly~~~~~~d~~F~~vg 63 (72)
T PF05066_consen 1 MTFKEAAYEVLEEAGRPMTFKEIWEEIQERGLY-KKSGKTPEATIAAQLYTDIKNEDSRFVKVG 63 (72)
T ss_dssp S-HHHHHHHHHHHH-S-EEHHHHHHHHHHHHTS----GGGGGHHHH-HHHHHHH-T-SS-EESS
T ss_pred CCHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCC-CcccCCHHHHHHHHHHHHcccCCCCEEEeC
Confidence 4788888888887 7889999999999987655 2226667777774443 345788875
No 16
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=41.69 E-value=9.5 Score=36.02 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=25.9
Q ss_pred HHHHhhcCccceEEeecccccchhhhhhhcccccceeecCCCccceeee
Q psy6789 281 LIMAAYDGGQEKVEIFASDTISRKSIHRRKWKSSRRIRFPGNLSWSMRL 329 (331)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (331)
|.-+++-|--||++- --|-+-..---+-.||.+||+|||
T Consensus 21 vFGe~W~gh~ekI~k----------~W~~~v~~eDiVllpGDiSWaM~l 59 (230)
T COG1768 21 VFGEPWSGHHEKIKK----------HWRSKVSPEDIVLLPGDISWAMRL 59 (230)
T ss_pred ecCCcccCchHHHHH----------HHHhcCChhhEEEecccchhheec
Confidence 445667777787642 223333344456789999999997
No 17
>PF10826 DUF2551: Protein of unknown function (DUF2551) ; InterPro: IPR020501 This entry contains proteins with no known function.
Probab=37.99 E-value=30 Score=28.46 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=20.9
Q ss_pred HHHHHhc----CCCCCHHHHHHHHHhcCCC
Q psy6789 60 IEQALKE----KHQLTVSGIYQWISERFPY 85 (331)
Q Consensus 60 I~~AI~~----~krLTL~eIY~~I~~~fPy 85 (331)
|..|+.. .+.+|..|||+.+.++|.-
T Consensus 12 iRr~vL~~fl~~~~~T~~di~e~L~~~f~v 41 (83)
T PF10826_consen 12 IRRAVLKLFLKGKKFTTDDIYERLKEKFDV 41 (83)
T ss_pred HHHHHHHHHHhCCCeeHHHHHHHHHHHcCc
Confidence 4556653 7999999999999999654
No 18
>KOG1924|consensus
Probab=32.12 E-value=2.2e+02 Score=32.52 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=12.4
Q ss_pred CCCCCCCCCHHHHHHHHHhc
Q psy6789 47 KTHRKPPFTYTELIEQALKE 66 (331)
Q Consensus 47 ~~~~KPPySYa~LI~~AI~~ 66 (331)
+-..||. |..||..+|+.
T Consensus 417 Dy~~rpq--YykLIEecISq 434 (1102)
T KOG1924|consen 417 DYYIRPQ--YYKLIEECISQ 434 (1102)
T ss_pred hhhhhHH--HHHHHHHHHHH
Confidence 4455665 88888888853
No 19
>COG2958 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.17 E-value=64 Score=31.98 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=42.6
Q ss_pred CHHHHHHHHHh-cCCCCCHHHHHHHHHhcCCC------CCCCCccc------ccccccccccccccccCccC
Q psy6789 55 TYTELIEQALK-EKHQLTVSGIYQWISERFPY------YNQNDDRW------KNSVRHNLSINPHFRKGVKA 113 (331)
Q Consensus 55 SYa~LI~~AI~-~~krLTL~eIY~~I~~~fPy------yr~~~~gW------kNSIRHNLSlnk~F~Kv~r~ 113 (331)
+|..+|-..++ .+..+|..|||+|+.+.||- |...++.= --+.|=||-.+.-|.|+...
T Consensus 6 ~~~e~vl~~Lq~~~ep~t~~eI~eka~e~~~~~~~~kk~~s~g~tp~q~va~~iy~~~~lq~~~pflKvte~ 77 (307)
T COG2958 6 NLIEIVLSVLQTSEEPFTAREIAEKAFETFPAECQEKKFDSGGDTPQQLVAEIIYTRPNLQEKHPFLKVTEG 77 (307)
T ss_pred hhHHHHHHHHHccCCCCcHHHHHHHHHHhccHHHHHHhhccccccHHHHHHHHHhcCccccccCcccccccC
Confidence 36666666666 48999999999999999985 22222222 24667788888899998753
No 20
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=28.67 E-value=78 Score=25.18 Aligned_cols=68 Identities=26% Similarity=0.450 Sum_probs=45.2
Q ss_pred CHHHHHHHH---Hhc-CCCCCHHHHHHHHHhcCCCC--------CCCC--cccccccccccccccccccCccCCCCCcce
Q psy6789 55 TYTELIEQA---LKE-KHQLTVSGIYQWISERFPYY--------NQND--DRWKNSVRHNLSINPHFRKGVKASQGAGHL 120 (331)
Q Consensus 55 SYa~LI~~A---I~~-~krLTL~eIY~~I~~~fPyy--------r~~~--~gWkNSIRHNLSlnk~F~Kv~r~~~GKG~~ 120 (331)
+|..|+.-. |.+ ++.++.+||++.|.++|..= ..+. .-|+|.|+=.++--++.--+.+. ++| .
T Consensus 1 ~~~~~~~piL~~L~~~g~~~~~~ei~~~v~~~~~ls~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli~~~--~rG-~ 77 (92)
T PF14338_consen 1 TYDELMPPILEALKDLGGSASRKEIYERVAERFGLSDEERNERLPSGQGYSRFKNRIRWARSYLKKAGLIERP--KRG-I 77 (92)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhCCCHHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCccCC--CCC-c
Confidence 466666644 445 78999999999999999752 1111 25999888776654444333332 344 9
Q ss_pred EeecC
Q psy6789 121 WNLSD 125 (331)
Q Consensus 121 Wtl~~ 125 (331)
|.|.+
T Consensus 78 ~~iT~ 82 (92)
T PF14338_consen 78 WRITE 82 (92)
T ss_pred eEECH
Confidence 99987
No 21
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=25.02 E-value=62 Score=24.10 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=33.8
Q ss_pred CHHHHHHHHHhc----CCCCCHHHHHHHHHhcCCCCCCCCccccccccccc-cccccc
Q psy6789 55 TYTELIEQALKE----KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNL-SINPHF 107 (331)
Q Consensus 55 SYa~LI~~AI~~----~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNL-Slnk~F 107 (331)
.-..+|..+|.+ ++.+.|+++-.++.++||-|....=|..+ ++.-| ++-+.|
T Consensus 5 ~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~-l~~ll~~~~~~~ 61 (74)
T PF12872_consen 5 ELKKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSS-LSELLESLPDVV 61 (74)
T ss_dssp HHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSS-HHHHHHT-TTTE
T ss_pred HHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCc-HHHHHHhCCCeE
Confidence 346778888843 35799999999999999888776655542 44444 333443
No 22
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=24.26 E-value=97 Score=25.28 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=27.1
Q ss_pred HHHHHHHHHhc----CCCCCHHHHHHHHHhcCCCCC
Q psy6789 56 YTELIEQALKE----KHQLTVSGIYQWISERFPYYN 87 (331)
Q Consensus 56 Ya~LI~~AI~~----~krLTL~eIY~~I~~~fPyyr 87 (331)
-++.|+.||.. +...|+..|.+++.++||--.
T Consensus 12 L~EvlC~~I~dln~~~~~at~E~l~~~L~~~yp~i~ 47 (80)
T PF10264_consen 12 LPEVLCWVISDLNAAGQPATQETLREHLRKHYPGIA 47 (80)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC
Confidence 56789999964 567999999999999999754
No 23
>KOG0995|consensus
Probab=22.01 E-value=22 Score=38.26 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=35.3
Q ss_pred cccCCCcchhhhhhcccCCcceeeccccchhhHHHHHHhhcCccceEE
Q psy6789 247 KLYQYEPSKNLIMAAYDGGQEKVEIFASDTISKNLIMAAYDGGQEKVE 294 (331)
Q Consensus 247 y~fn~pfsinnlmss~~~qq~k~d~ka~~~~~~~~~~~~~~~~~~~~~ 294 (331)
+-|.||.||++||--+. | ||-|-=+|+-..||-.|+-+ +++|
T Consensus 86 ngf~~~iS~k~l~~PS~----K-dF~~iFkfLY~~Ldp~y~f~-~r~E 127 (581)
T KOG0995|consen 86 NGFSHPISIKLLMKPSV----K-DFIAIFKFLYGFLDPDYEFP-ERIE 127 (581)
T ss_pred cCCCCChhhhhcCCCcc----c-cHHHHHHHHHhccCCCcccc-hhHH
Confidence 45789999999998887 5 99999999999999988875 4443
No 24
>KOG1924|consensus
Probab=20.76 E-value=4.4e+02 Score=30.26 Aligned_cols=6 Identities=0% Similarity=-0.236 Sum_probs=2.7
Q ss_pred CCCCCC
Q psy6789 239 LYTPGE 244 (331)
Q Consensus 239 ~hlk~d 244 (331)
-+||+-
T Consensus 612 ~gLkpK 617 (1102)
T KOG1924|consen 612 FGLKPK 617 (1102)
T ss_pred CCCCcc
Confidence 344443
Done!