Query psy6789
Match_columns 331
No_of_seqs 190 out of 756
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:25:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 100.0 5.4E-38 1.8E-42 258.6 2.6 79 49-127 1-83 (102)
2 2c6y_A Forkhead box protein K2 100.0 7.3E-38 2.5E-42 261.3 2.8 96 46-142 11-110 (111)
3 2hdc_A Protein (transcription 100.0 4.9E-38 1.7E-42 256.7 0.6 91 50-141 1-95 (97)
4 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 1.4E-37 4.9E-42 258.8 3.1 92 50-142 2-97 (109)
5 1kq8_A HFH-1, hepatocyte nucle 100.0 2E-37 7E-42 254.3 3.2 91 50-141 1-96 (100)
6 3coa_C Forkhead box protein O1 100.0 3.1E-36 1.1E-40 253.5 4.1 81 47-127 7-94 (117)
7 3bpy_A FORK head domain, forkh 100.0 3.5E-36 1.2E-40 240.4 4.0 77 48-124 2-85 (85)
8 3l2c_A Forkhead box protein O4 100.0 1.5E-35 5E-40 247.0 4.0 81 47-127 20-107 (110)
9 2a07_F Forkhead box protein P2 100.0 1.2E-35 4.2E-40 241.0 0.2 74 50-126 2-77 (93)
10 1e17_A AFX; DNA binding domain 100.0 2.9E-35 1E-39 256.7 1.6 81 47-127 36-123 (150)
11 3g73_A Forkhead box protein M1 100.0 1E-33 3.5E-38 245.2 2.2 83 46-129 13-98 (142)
12 1uss_A Histone H1; DNA binding 87.6 0.45 1.5E-05 37.4 3.6 31 55-85 9-42 (88)
13 1uhm_A Histone H1, histone HHO 87.6 0.38 1.3E-05 36.9 3.1 31 55-85 6-39 (78)
14 2rqp_A Heterochromatin protein 87.3 0.41 1.4E-05 37.5 3.3 31 55-85 11-44 (88)
15 1hst_A Histone H5; chromosomal 85.0 0.6 2E-05 37.0 3.1 30 55-84 9-41 (90)
16 1ust_A Histone H1; DNA binding 82.9 0.76 2.6E-05 36.6 2.9 31 55-85 9-42 (93)
17 2lso_A Histone H1X; structural 72.4 0.96 3.3E-05 35.2 0.0 30 55-84 7-39 (83)
18 1ghc_A GH1; chromosomal protei 55.3 2 6.8E-05 32.3 -0.6 28 55-82 5-35 (75)
19 2kzv_A Uncharacterized protein 23.6 1.2E+02 0.0041 23.8 5.0 41 54-94 7-51 (92)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=5.4e-38 Score=258.58 Aligned_cols=79 Identities=46% Similarity=0.920 Sum_probs=74.9
Q ss_pred CCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccC--CCCCcceEeec
Q psy6789 49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNLS 124 (331)
Q Consensus 49 ~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~--~~GKG~~Wtl~ 124 (331)
|.||||||++||+|||++ +++|||+|||+||+++||||+.+..|||||||||||||+||+||+++ ++|||+||+|+
T Consensus 1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~ 80 (102)
T 1vtn_C 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH 80 (102)
T ss_dssp CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence 589999999999999986 79999999999999999999999999999999999999999999984 68999999999
Q ss_pred CCC
Q psy6789 125 DME 127 (331)
Q Consensus 125 ~~~ 127 (331)
++.
T Consensus 81 p~~ 83 (102)
T 1vtn_C 81 PSS 83 (102)
T ss_dssp GGG
T ss_pred cCH
Confidence 864
No 2
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=100.00 E-value=7.3e-38 Score=261.30 Aligned_cols=96 Identities=36% Similarity=0.741 Sum_probs=83.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccC--CCCCcceE
Q psy6789 46 AKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLW 121 (331)
Q Consensus 46 ~~~~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~--~~GKG~~W 121 (331)
...+.||||||++||++||++ +++|||+|||+||+++||||+.+..|||||||||||||+||+||+|. ++|||+||
T Consensus 11 ~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W 90 (111)
T 2c6y_A 11 RGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFW 90 (111)
T ss_dssp ---CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEE
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceE
Confidence 356799999999999999986 79999999999999999999999999999999999999999999985 58999999
Q ss_pred eecCCCchhhhhhhhhhhhhh
Q psy6789 122 NLSDMEPVEDASKSNWKKNRL 142 (331)
Q Consensus 122 tl~~~~~~e~~~~~~~kr~R~ 142 (331)
+|+++ ...++.++.++|+|.
T Consensus 91 ~l~p~-~~~~~~~~~~r~rr~ 110 (111)
T 2c6y_A 91 RIDPA-SESKLIEQAFRKRRP 110 (111)
T ss_dssp EECHH-HHHHHHHHHTCCCCC
T ss_pred EeChh-HHHhhhcccccccCC
Confidence 99985 344555666666653
No 3
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=4.9e-38 Score=256.74 Aligned_cols=91 Identities=38% Similarity=0.750 Sum_probs=80.9
Q ss_pred CCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccC--CCCCcceEeecC
Q psy6789 50 RKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNLSD 125 (331)
Q Consensus 50 ~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~--~~GKG~~Wtl~~ 125 (331)
.||||||++||+|||++ +++|||+|||+||+++||||+.+..|||||||||||||+||+||+++ ++|||+||+|++
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p 80 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence 49999999999999986 79999999999999999999999999999999999999999999986 579999999999
Q ss_pred CCchhhhhhhhhhhhh
Q psy6789 126 MEPVEDASKSNWKKNR 141 (331)
Q Consensus 126 ~~~~e~~~~~~~kr~R 141 (331)
+. .+.+..+.++|||
T Consensus 81 ~~-~~~f~~g~~~rrr 95 (97)
T 2hdc_A 81 QS-EDMFDNGSFLRRR 95 (97)
T ss_dssp TH-HHHHHHSCCCSSS
T ss_pred CH-HHHHhCCCccCCC
Confidence 63 4445556665554
No 4
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=1.4e-37 Score=258.80 Aligned_cols=92 Identities=38% Similarity=0.739 Sum_probs=79.1
Q ss_pred CCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccC--CCCCcceEeecC
Q psy6789 50 RKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNLSD 125 (331)
Q Consensus 50 ~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~--~~GKG~~Wtl~~ 125 (331)
.||||||++||+|||++ +++|||+|||+||+++||||+.++.|||||||||||||+||+||+|+ ++|||+||+|++
T Consensus 2 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p 81 (109)
T 2hfh_A 2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 81 (109)
T ss_dssp CCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECc
Confidence 69999999999999986 79999999999999999999999999999999999999999999986 589999999999
Q ss_pred CCchhhhhhhhhhhhhh
Q psy6789 126 MEPVEDASKSNWKKNRL 142 (331)
Q Consensus 126 ~~~~e~~~~~~~kr~R~ 142 (331)
+.. +.+..+.++|||.
T Consensus 82 ~~~-~~f~~g~~~Rrr~ 97 (109)
T 2hfh_A 82 QSE-DMFDNGSFLRRRK 97 (109)
T ss_dssp TCC-HHHHSSSCC----
T ss_pred cHH-HHHhCCCcccCcc
Confidence 743 3444455544444
No 5
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=2e-37 Score=254.31 Aligned_cols=91 Identities=31% Similarity=0.649 Sum_probs=67.0
Q ss_pred CCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccC--C-CCCcceEeec
Q psy6789 50 RKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--S-QGAGHLWNLS 124 (331)
Q Consensus 50 ~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~--~-~GKG~~Wtl~ 124 (331)
+||||||++||+|||++ +++|||+|||+||+++||||+.+..|||||||||||||+||+||+++ + .|||+||+|+
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~ 80 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEEC
Confidence 49999999999999986 79999999999999999999999999999999999999999999985 3 4999999999
Q ss_pred CCCchhhhhhhhhhhhh
Q psy6789 125 DMEPVEDASKSNWKKNR 141 (331)
Q Consensus 125 ~~~~~e~~~~~~~kr~R 141 (331)
++.. +.+..+.++|+|
T Consensus 81 p~~~-~~f~~g~~~rrr 96 (100)
T 1kq8_A 81 PNSE-YTFADGVFRRRR 96 (100)
T ss_dssp C----------------
T ss_pred cCHH-HHHhCCCcccCC
Confidence 8643 333344554444
No 6
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=3.1e-36 Score=253.52 Aligned_cols=81 Identities=31% Similarity=0.690 Sum_probs=75.3
Q ss_pred CCCCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCC-----cccccccccccccccccccCccCCCCCcc
Q psy6789 47 KTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQND-----DRWKNSVRHNLSINPHFRKGVKASQGAGH 119 (331)
Q Consensus 47 ~~~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~-----~gWkNSIRHNLSlnk~F~Kv~r~~~GKG~ 119 (331)
..+.||||||++||+|||++ +++|||+|||+||+++||||++++ .|||||||||||||+||+||+++++|||+
T Consensus 7 ~~n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~~~~GKg~ 86 (117)
T 3coa_C 7 RRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNEGTGKSS 86 (117)
T ss_dssp CCBTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECCSSTTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhcccccCCCCCcc
Confidence 45689999999999999986 799999999999999999999986 79999999999999999999999999999
Q ss_pred eEeecCCC
Q psy6789 120 LWNLSDME 127 (331)
Q Consensus 120 ~Wtl~~~~ 127 (331)
||+|++++
T Consensus 87 ~W~l~p~~ 94 (117)
T 3coa_C 87 WWMLNPEG 94 (117)
T ss_dssp EEEECC--
T ss_pred eEEECccc
Confidence 99999964
No 7
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=240.44 Aligned_cols=77 Identities=35% Similarity=0.714 Sum_probs=72.7
Q ss_pred CCCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCC-----cccccccccccccccccccCccCCCCCcce
Q psy6789 48 THRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQND-----DRWKNSVRHNLSINPHFRKGVKASQGAGHL 120 (331)
Q Consensus 48 ~~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~-----~gWkNSIRHNLSlnk~F~Kv~r~~~GKG~~ 120 (331)
.+.||||||++||+|||++ +++|||+|||+||+++||||+.++ .|||||||||||||+||+||+++++|||+|
T Consensus 2 rn~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~~~GKg~~ 81 (85)
T 3bpy_A 2 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSW 81 (85)
T ss_dssp CBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCCSTTCCCE
T ss_pred CCCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCCCCCCCCCc
Confidence 4689999999999999986 799999999999999999999874 699999999999999999999999999999
Q ss_pred Eeec
Q psy6789 121 WNLS 124 (331)
Q Consensus 121 Wtl~ 124 (331)
|+||
T Consensus 82 W~ld 85 (85)
T 3bpy_A 82 WMLN 85 (85)
T ss_dssp EEEC
T ss_pred eecC
Confidence 9996
No 8
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=100.00 E-value=1.5e-35 Score=246.99 Aligned_cols=81 Identities=33% Similarity=0.676 Sum_probs=73.9
Q ss_pred CCCCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCC-----cccccccccccccccccccCccCCCCCcc
Q psy6789 47 KTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQND-----DRWKNSVRHNLSINPHFRKGVKASQGAGH 119 (331)
Q Consensus 47 ~~~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~-----~gWkNSIRHNLSlnk~F~Kv~r~~~GKG~ 119 (331)
....||||||++||+|||++ +++|||+|||+||+++||||+.++ .|||||||||||||+||+||+++++|||+
T Consensus 20 ~~~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~~~GKG~ 99 (110)
T 3l2c_A 20 RRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSS 99 (110)
T ss_dssp CCBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCCSTTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCCCCCCCCc
Confidence 46689999999999999986 789999999999999999999874 69999999999999999999999999999
Q ss_pred eEeecCCC
Q psy6789 120 LWNLSDME 127 (331)
Q Consensus 120 ~Wtl~~~~ 127 (331)
||+|+++.
T Consensus 100 ~W~l~p~~ 107 (110)
T 3l2c_A 100 WWMLNPEG 107 (110)
T ss_dssp EEEEC---
T ss_pred eEEECccc
Confidence 99999963
No 9
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=1.2e-35 Score=241.03 Aligned_cols=74 Identities=42% Similarity=0.879 Sum_probs=70.5
Q ss_pred CCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCCCcccccccccccccccccccCccCCCCCcceEeecCC
Q psy6789 50 RKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLSDM 126 (331)
Q Consensus 50 ~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSlnk~F~Kv~r~~~GKG~~Wtl~~~ 126 (331)
.||||||++||++||++ +++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++ |||+||+||++
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~---gkG~~W~l~~~ 77 (93)
T 2a07_F 2 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN---VKGAVWTVDEV 77 (93)
T ss_dssp CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC---SSSEECCBCHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCC---CCCCeeEEChH
Confidence 69999999999999986 7999999999999999999999999999999999999999999974 89999999973
No 10
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=2.9e-35 Score=256.66 Aligned_cols=81 Identities=33% Similarity=0.678 Sum_probs=75.8
Q ss_pred CCCCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCCC-----CcccccccccccccccccccCccCCCCCcc
Q psy6789 47 KTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQN-----DDRWKNSVRHNLSINPHFRKGVKASQGAGH 119 (331)
Q Consensus 47 ~~~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~~-----~~gWkNSIRHNLSlnk~F~Kv~r~~~GKG~ 119 (331)
..+.||||||++||+|||++ +++|||+|||+||+++||||+++ ..|||||||||||||+||+||+++++|||+
T Consensus 36 ~rn~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r~~~GKG~ 115 (150)
T 1e17_A 36 RRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSS 115 (150)
T ss_dssp CCCTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECCTTTSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCCCCCCCcc
Confidence 45689999999999999986 79999999999999999999976 379999999999999999999999899999
Q ss_pred eEeecCCC
Q psy6789 120 LWNLSDME 127 (331)
Q Consensus 120 ~Wtl~~~~ 127 (331)
||+|+++.
T Consensus 116 ~W~ldp~~ 123 (150)
T 1e17_A 116 WWMLNPEG 123 (150)
T ss_dssp EEEECTTC
T ss_pred eEEECccc
Confidence 99999974
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=99.97 E-value=1e-33 Score=245.16 Aligned_cols=83 Identities=30% Similarity=0.777 Sum_probs=75.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhc--CCCCCHHHHHHHHHhcCCCCCC-CCcccccccccccccccccccCccCCCCCcceEe
Q psy6789 46 AKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQ-NDDRWKNSVRHNLSINPHFRKGVKASQGAGHLWN 122 (331)
Q Consensus 46 ~~~~~KPPySYa~LI~~AI~~--~krLTL~eIY~~I~~~fPyyr~-~~~gWkNSIRHNLSlnk~F~Kv~r~~~GKG~~Wt 122 (331)
.....||||||++||+|||++ +++|||+|||+||+++||||+. +..|||||||||||||+||+|+. ++.|||+||+
T Consensus 13 ~~~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~-~~~GKg~~W~ 91 (142)
T 3g73_A 13 NSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRET-SANGKVSFWT 91 (142)
T ss_dssp -CTTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEE-CTTSCCEEEE
T ss_pred ccCCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecC-CCCCCCceEE
Confidence 345689999999999999986 7899999999999999999998 88999999999999999999864 5689999999
Q ss_pred ecCCCch
Q psy6789 123 LSDMEPV 129 (331)
Q Consensus 123 l~~~~~~ 129 (331)
|+++...
T Consensus 92 i~p~~~~ 98 (142)
T 3g73_A 92 IHPSANR 98 (142)
T ss_dssp ECTTTCC
T ss_pred ECccccc
Confidence 9997543
No 12
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=87.58 E-value=0.45 Score=37.42 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=27.2
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHhcCCC
Q psy6789 55 TYTELIEQALKE---KHQLTVSGIYQWISERFPY 85 (331)
Q Consensus 55 SYa~LI~~AI~~---~krLTL~eIY~~I~~~fPy 85 (331)
+|..||..||.. .+..++..|..||+.+|+.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSS 42 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCC
Confidence 499999999975 5789999999999999653
No 13
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=87.57 E-value=0.38 Score=36.91 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=27.4
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHhcCCC
Q psy6789 55 TYTELIEQALKE---KHQLTVSGIYQWISERFPY 85 (331)
Q Consensus 55 SYa~LI~~AI~~---~krLTL~eIY~~I~~~fPy 85 (331)
+|..||..||.. .+..++..|-.||+.+|+.
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~ 39 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 39 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCC
Confidence 499999999975 5789999999999999764
No 14
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=87.32 E-value=0.41 Score=37.50 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=27.5
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHhcCCC
Q psy6789 55 TYTELIEQALKE---KHQLTVSGIYQWISERFPY 85 (331)
Q Consensus 55 SYa~LI~~AI~~---~krLTL~eIY~~I~~~fPy 85 (331)
+|..||..||.. .+..++..|..||+.+|+-
T Consensus 11 ~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~ 44 (88)
T 2rqp_A 11 KMDAILTEAIKACFQKSGASVVAIRKYIIHKYPS 44 (88)
T ss_dssp CHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCST
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCC
Confidence 499999999975 5789999999999999873
No 15
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=85.04 E-value=0.6 Score=37.00 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=26.8
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHhcCC
Q psy6789 55 TYTELIEQALKE---KHQLTVSGIYQWISERFP 84 (331)
Q Consensus 55 SYa~LI~~AI~~---~krLTL~eIY~~I~~~fP 84 (331)
+|..||..||.. .+..++..|-.||+.+|.
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~ 41 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYK 41 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcc
Confidence 499999999975 567999999999999976
No 16
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=82.87 E-value=0.76 Score=36.59 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=27.1
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHhcCCC
Q psy6789 55 TYTELIEQALKE---KHQLTVSGIYQWISERFPY 85 (331)
Q Consensus 55 SYa~LI~~AI~~---~krLTL~eIY~~I~~~fPy 85 (331)
+|..||..||.. .+..++.-|-.||+.+|+.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (93)
T 1ust_A 9 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 42 (93)
T ss_dssp CHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCC
Confidence 499999999975 5789999999999999653
No 17
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=72.35 E-value=0.96 Score=35.23 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=26.4
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHhcCC
Q psy6789 55 TYTELIEQALKE---KHQLTVSGIYQWISERFP 84 (331)
Q Consensus 55 SYa~LI~~AI~~---~krLTL~eIY~~I~~~fP 84 (331)
+|..||..||.. .+.-++.-|..+|..++.
T Consensus 7 ~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 7 KYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 899999999975 567899999999999974
No 18
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=55.27 E-value=2 Score=32.29 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=24.6
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHhc
Q psy6789 55 TYTELIEQALKE---KHQLTVSGIYQWISER 82 (331)
Q Consensus 55 SYa~LI~~AI~~---~krLTL~eIY~~I~~~ 82 (331)
+|..||..||.. .+..++.-|..||+.+
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 489999999975 4678999999999999
No 19
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=23.61 E-value=1.2e+02 Score=23.76 Aligned_cols=41 Identities=7% Similarity=0.195 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHhc----CCCCCHHHHHHHHHhcCCCCCCCCcccc
Q psy6789 54 FTYTELIEQALKE----KHQLTVSGIYQWISERFPYYNQNDDRWK 94 (331)
Q Consensus 54 ySYa~LI~~AI~~----~krLTL~eIY~~I~~~fPyyr~~~~gWk 94 (331)
-.-..||..||.. ++-..|++|=++|.+.+|=|....=|.+
T Consensus 7 ~~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYGy~ 51 (92)
T 2kzv_A 7 HPLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWGHG 51 (92)
T ss_dssp SSHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTCSS
T ss_pred HHHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccCcc
Confidence 3567899999964 6789999999999999999986655544
Done!