BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy6789
MEYASLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELI
EQALKEKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGAGHL
WNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQ
PLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLYIQSNDNVLYTPHEDHKLYHNDNVLY
TPGEDHKLYQYEPSKNLIMAAYDGGQEKVEIFASDTISKNLIMAAYDGGQEKVEIFASDT
ISRKSIHRRKWKSSRRIRFPGNLSWSMRLMI

High Scoring Gene Products

Symbol, full name Information P value
FOXA3
Hepatocyte nuclear factor 3-gamma
protein from Bos taurus 2.6e-17
LOC100512416
Uncharacterized protein
protein from Sus scrofa 9.7e-17
fd19B
forkhead domain 19B
protein from Drosophila melanogaster 1.7e-16
FOXA3
Uncharacterized protein
protein from Canis lupus familiaris 4.4e-16
Foxa3
forkhead box A3
protein from Mus musculus 4.7e-16
foxa1-a
Forkhead box protein A1-A
protein from Xenopus laevis 6.2e-16
FOXL2
Transcription factor FOXL2
protein from Gallus gallus 1.1e-15
FOXL2
Uncharacterized protein
protein from Canis lupus familiaris 1.4e-15
zgc:194189 gene_product from Danio rerio 1.9e-15
foxa1-b
Forkhead box protein A1-B
protein from Xenopus laevis 2.5e-15
foxq2
forkhead box Q2
gene_product from Danio rerio 3.2e-15
FOXA2
Uncharacterized protein
protein from Canis lupus familiaris 3.2e-15
FOXL2
Uncharacterized protein
protein from Canis lupus familiaris 5.4e-15
foxa1
forkhead box A1
gene_product from Danio rerio 6.0e-15
Foxa3
forkhead box A3
gene from Rattus norvegicus 7.1e-15
FOXA2
Hepatocyte nuclear factor 3-beta
protein from Homo sapiens 7.4e-15
foxf1-b
Forkhead box protein F1-B
protein from Xenopus laevis 7.6e-15
foxi1-b
Forkhead box protein I1-B
protein from Xenopus laevis 7.8e-15
foxa1
Forkhead box protein A1
protein from Xenopus (Silurana) tropicalis 8.1e-15
FOXA2
Uncharacterized protein
protein from Sus scrofa 9.4e-15
FOXA3
Hepatocyte nuclear factor 3-gamma
protein from Homo sapiens 1.2e-14
FOXA2
Uncharacterized protein
protein from Bos taurus 1.2e-14
FoxJ2
Forkhead transcription factor J2
protein from Strongylocentrotus purpuratus 1.4e-14
PANDA_013447
Putative uncharacterized protein
protein from Ailuropoda melanoleuca 1.6e-14
Foxa2
forkhead box A2
gene from Rattus norvegicus 1.8e-14
FoxJ1
Forkhead transcription factor J1
protein from Strongylocentrotus purpuratus 1.8e-14
AAR050C
AAR050Cp
protein from Ashbya gossypii ATCC 10895 2.2e-14
foxi3b
forkhead box I3b
gene_product from Danio rerio 2.3e-14
Foxa2
forkhead box A2
protein from Mus musculus 2.5e-14
foxl2
forkhead box L2
gene_product from Danio rerio 2.8e-14
foxa3
forkhead box A3
gene_product from Danio rerio 3.3e-14
foxj2
Forkhead box protein J2
protein from Xenopus laevis 3.9e-14
FoxQ2
Forkhead transcription factor Q2
protein from Strongylocentrotus purpuratus 4.8e-14
HCM1 gene_product from Candida albicans 5.0e-14
foxf1
Forkhead box protein F1
protein from Xenopus (Silurana) tropicalis 6.4e-14
foxf1-a
Forkhead box protein F1-A
protein from Xenopus laevis 6.4e-14
foxa2
forkhead box A2
gene_product from Danio rerio 6.7e-14
foxa4
Forkhead box protein A4
protein from Xenopus (Silurana) tropicalis 8.1e-14
foxi1
Forkhead box protein I1
protein from Xenopus (Silurana) tropicalis 1.3e-13
FOXA1
Uncharacterized protein
protein from Bos taurus 1.4e-13
FOXL2
Forkhead box protein L2
protein from Ellobius lutescens 1.5e-13
foxa2-b
Forkhead box protein A2-B
protein from Xenopus laevis 1.6e-13
FOXK2
Forkhead box protein K2
protein from Homo sapiens 1.6e-13
Foxj3
forkhead box J3
protein from Mus musculus 1.7e-13
foxL
FoxL protein
protein from Ciona intestinalis 1.8e-13
foxa2
Forkhead box protein A2
protein from Xenopus (Silurana) tropicalis 1.8e-13
ches1
checkpoint suppressor 1
gene_product from Danio rerio 1.9e-13
Foxn4
forkhead box N4
gene from Rattus norvegicus 2.0e-13
foxk2
forkhead box K2
gene_product from Danio rerio 2.0e-13
fkh-10 gene from Caenorhabditis elegans 2.1e-13
fkh-10
Protein FKH-10
protein from Caenorhabditis elegans 2.1e-13
FOXJ3
Forkhead box J3, isoform CRA_b
protein from Homo sapiens 2.3e-13
foxd5-a
Forkhead box protein D5-A
protein from Xenopus laevis 2.8e-13
AN2854.2
Putative forkhead transcription factor (Eurofung)
protein from Aspergillus nidulans FGSC A4 2.8e-13
foxa4-b
Forkhead box protein A4-B
protein from Xenopus laevis 3.3e-13
FOXL1
Forkhead box protein L1
protein from Homo sapiens 3.4e-13
Foxl2
forkhead box L2
gene from Rattus norvegicus 3.5e-13
Foxl2
forkhead box L2
protein from Mus musculus 3.5e-13
FOXL2
Forkhead box protein L2
protein from Homo sapiens 3.6e-13
foxa2-a
Forkhead box protein A2-A
protein from Xenopus laevis 4.1e-13
FOXJ3
Uncharacterized protein
protein from Bos taurus 4.3e-13
foxa
forkhead box A sequence
gene_product from Danio rerio 4.4e-13
foxj2
Forkhead box protein J2
protein from Xenopus (Silurana) tropicalis 4.5e-13
FOXL2
Forkhead box protein L2
protein from Bos taurus 4.6e-13
FOXL2
Forkhead box protein L2
protein from Sus scrofa 4.6e-13
FOXL2
Forkhead box protein L2
protein from Capra hircus 4.6e-13
Foxn4
forkhead box N4
protein from Mus musculus 4.7e-13
foxd5-b
Forkhead box protein D5-B
protein from Xenopus laevis 4.9e-13
FOXL2
Forkhead box protein L2
protein from Oryctolagus cuniculus 5.4e-13
foxl1
forkhead box L1
gene_product from Danio rerio 5.4e-13
HCM1
Forkhead transcription factor
gene from Saccharomyces cerevisiae 5.5e-13
FOXJ3
Uncharacterized protein
protein from Canis lupus familiaris 5.8e-13
LOC427656
Uncharacterized protein
protein from Gallus gallus 5.9e-13
foxi3a
forkhead box I3a
gene_product from Danio rerio 6.4e-13
Foxl1
forkhead box L1
protein from Mus musculus 7.1e-13
fd64A
forkhead domain 64A
protein from Drosophila melanogaster 7.3e-13
FOXA1
Hepatocyte nuclear factor 3-alpha
protein from Homo sapiens 7.3e-13
FoxA
Uncharacterized protein
protein from Strongylocentrotus purpuratus 7.4e-13
foxj1.2
Forkhead box protein J1.2
protein from Xenopus (Silurana) tropicalis 7.8e-13
FOXA1
Uncharacterized protein
protein from Canis lupus familiaris 7.9e-13
foxf1
forkhead box F1
gene_product from Danio rerio 8.3e-13
Foxa1
forkhead box A1
gene from Rattus norvegicus 8.5e-13
foxd5
Forkhead box protein D5
protein from Xenopus (Silurana) tropicalis 8.5e-13
FOXA1
Uncharacterized protein
protein from Sus scrofa 8.5e-13
Foxa1
forkhead box A1
protein from Mus musculus 8.5e-13
FOXA1
Hepatocyte nuclear factor 3-alpha
protein from Homo sapiens 8.7e-13
FOXA1
Uncharacterized protein
protein from Canis lupus familiaris 9.1e-13
Ci-FoxJ2
Transcription factor protein
protein from Ciona intestinalis 9.3e-13
foxa4-a
Forkhead box protein A4-A
protein from Xenopus laevis 9.6e-13
LOC100511634
Uncharacterized protein
protein from Sus scrofa 1.2e-12
FOXD1
Forkhead box protein D1
protein from Gallus gallus 1.3e-12
Foxd3
forkhead box D3
gene from Rattus norvegicus 1.3e-12

The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy6789
        (331 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|Q3Y598 - symbol:FOXA3 "Hepatocyte nuclear facto...   226  2.6e-17   1
UNIPROTKB|F1RM41 - symbol:FOXA3 "Uncharacterized protein"...   222  9.7e-17   1
FB|FBgn0031086 - symbol:fd19B "forkhead domain 19B" speci...   206  1.7e-16   1
UNIPROTKB|E2RNB4 - symbol:FOXA3 "Uncharacterized protein"...   217  4.4e-16   1
MGI|MGI:1347477 - symbol:Foxa3 "forkhead box A3" species:...   217  4.7e-16   1
UNIPROTKB|Q6LD29 - symbol:foxa1-a "Forkhead box protein A...   219  6.2e-16   1
UNIPROTKB|Q5J7N5 - symbol:FOXL2 "Transcription factor FOX...   210  1.1e-15   1
UNIPROTKB|H9L130 - symbol:FOXA2 "Uncharacterized protein"...   198  1.4e-15   1
UNIPROTKB|E2R718 - symbol:FOXL2 "Uncharacterized protein"...   198  1.4e-15   1
ZFIN|ZDB-GENE-081022-71 - symbol:zgc:194189 "zgc:194189" ...   197  1.9e-15   1
UNIPROTKB|P32315 - symbol:foxa1-b "Forkhead box protein A...   214  2.5e-15   1
ZFIN|ZDB-GENE-050208-663 - symbol:foxq2 "forkhead box Q2"...   195  3.2e-15   1
UNIPROTKB|E2RNQ6 - symbol:FOXA2 "Uncharacterized protein"...   202  3.2e-15   2
UNIPROTKB|F6Y816 - symbol:FOXL2 "Uncharacterized protein"...   193  5.4e-15   1
ZFIN|ZDB-GENE-990415-78 - symbol:foxa1 "forkhead box A1" ...   211  6.0e-15   1
RGD|2809 - symbol:Foxa3 "forkhead box A3" species:10116 "...   208  7.1e-15   1
UNIPROTKB|Q9Y261 - symbol:FOXA2 "Hepatocyte nuclear facto...   202  7.4e-15   2
UNIPROTKB|Q9W707 - symbol:foxf1-b "Forkhead box protein F...   201  7.6e-15   2
UNIPROTKB|Q91905 - symbol:foxi1-b "Forkhead box protein I...   196  7.8e-15   2
UNIPROTKB|Q8AWH1 - symbol:foxa1 "Forkhead box protein A1"...   210  8.1e-15   1
UNIPROTKB|F1SAU0 - symbol:FOXA2 "Uncharacterized protein"...   202  9.4e-15   2
UNIPROTKB|P55318 - symbol:FOXA3 "Hepatocyte nuclear facto...   206  1.2e-14   1
UNIPROTKB|Q7T269 - symbol:FoxL2 "Forkhead transcription f...   190  1.2e-14   1
UNIPROTKB|F1MZB6 - symbol:FOXA2 "Uncharacterized protein"...   202  1.2e-14   2
UNIPROTKB|E1BTF1 - symbol:FOXL1 "Uncharacterized protein"...   198  1.3e-14   1
UNIPROTKB|Q2V894 - symbol:FoxJ2 "Forkhead transcription f...   208  1.4e-14   2
UNIPROTKB|D2HNY8 - symbol:PANDA_013447 "Putative uncharac...   202  1.6e-14   2
RGD|2808 - symbol:Foxa2 "forkhead box A2" species:10116 "...   199  1.8e-14   2
UNIPROTKB|Q2V889 - symbol:FoxJ1 "Forkhead transcription f...   208  1.8e-14   1
UNIPROTKB|Q75EM9 - symbol:AAR050C "AAR050Cp" species:2848...   207  2.2e-14   1
ZFIN|ZDB-GENE-031126-4 - symbol:foxi3b "forkhead box I3b"...   205  2.3e-14   1
MGI|MGI:1347476 - symbol:Foxa2 "forkhead box A2" species:...   202  2.5e-14   2
ZFIN|ZDB-GENE-060512-241 - symbol:foxl2 "forkhead box L2"...   200  2.8e-14   1
UNIPROTKB|G3V7T9 - symbol:Foxa3 "Forkhead box A3, isoform...   203  2.9e-14   1
ZFIN|ZDB-GENE-980526-423 - symbol:foxa3 "forkhead box A3"...   198  3.3e-14   2
UNIPROTKB|Q9DGG2 - symbol:FOXK1 "Winged helix protein CWH...   186  3.4e-14   1
UNIPROTKB|Q68EZ2 - symbol:foxj2 "Forkhead box protein J2"...   206  3.9e-14   1
UNIPROTKB|Q2V896 - symbol:FoxQ2 "Forkhead transcription f...   200  4.8e-14   1
CGD|CAL0005400 - symbol:HCM1 species:5476 "Candida albica...   206  5.0e-14   1
UNIPROTKB|Q28BS5 - symbol:foxf1 "Forkhead box protein F1"...   201  6.4e-14   1
UNIPROTKB|Q9W706 - symbol:foxf1-a "Forkhead box protein F...   201  6.4e-14   1
ZFIN|ZDB-GENE-980526-404 - symbol:foxa2 "forkhead box A2"...   202  6.7e-14   1
UNIPROTKB|Q6P839 - symbol:foxa4 "Forkhead box protein A4"...   201  8.1e-14   1
POMBASE|SPBC16G5.15c - symbol:fkh2 "fork head transcripti...   204  1.1e-13   1
UNIPROTKB|Q6P2Z3 - symbol:foxi1 "Forkhead box protein I1"...   198  1.3e-13   1
UNIPROTKB|F1MNS7 - symbol:FOXA1 "Uncharacterized protein"...   194  1.4e-13   2
UNIPROTKB|Q4VUF1 - symbol:FOXL2 "Forkhead box protein L2"...   193  1.5e-13   2
UNIPROTKB|P84961 - symbol:foxa2-b "Forkhead box protein A...   198  1.6e-13   2
UNIPROTKB|E9PM37 - symbol:FOXK2 "Forkhead box protein K2"...   180  1.6e-13   1
MGI|MGI:2443432 - symbol:Foxj3 "forkhead box J3" species:...   193  1.7e-13   2
UNIPROTKB|Q70VZ4 - symbol:foxL "FoxL protein" species:771...   189  1.8e-13   2
UNIPROTKB|Q7T1R4 - symbol:foxa2 "Forkhead box protein A2"...   199  1.8e-13   1
ZFIN|ZDB-GENE-040217-1 - symbol:ches1 "checkpoint suppres...   199  1.9e-13   1
RGD|1306389 - symbol:Foxn4 "forkhead box N4" species:1011...   199  2.0e-13   1
ZFIN|ZDB-GENE-030131-2861 - symbol:foxk2 "forkhead box K2...   201  2.0e-13   1
WB|WBGene00001442 - symbol:fkh-10 species:6239 "Caenorhab...   179  2.1e-13   1
UNIPROTKB|O17593 - symbol:fkh-10 "Protein FKH-10" species...   179  2.1e-13   1
UNIPROTKB|C9JVP0 - symbol:FOXJ3 "Forkhead box protein J3"...   192  2.3e-13   2
UNIPROTKB|Q9PRJ8 - symbol:foxd5-a "Forkhead box protein D...   195  2.8e-13   1
ASPGD|ASPL0000039161 - symbol:AN2854 species:162425 "Emer...   201  2.8e-13   1
UNIPROTKB|Q5B9C6 - symbol:AN2854.2 "Putative forkhead tra...   201  2.8e-13   1
UNIPROTKB|P33206 - symbol:foxa4-b "Forkhead box protein A...   196  3.3e-13   1
UNIPROTKB|Q12952 - symbol:FOXL1 "Forkhead box protein L1"...   194  3.4e-13   1
RGD|1310041 - symbol:Foxl2 "forkhead box L2" species:1011...   191  3.5e-13   2
MGI|MGI:1349428 - symbol:Foxl2 "forkhead box L2" species:...   191  3.5e-13   2
UNIPROTKB|P58012 - symbol:FOXL2 "Forkhead box protein L2"...   191  3.6e-13   2
UNIPROTKB|Q91765 - symbol:foxa2-a "Forkhead box protein A...   196  4.1e-13   1
UNIPROTKB|E1BK17 - symbol:FOXJ3 "Uncharacterized protein"...   197  4.3e-13   2
ZFIN|ZDB-GENE-990415-76 - symbol:foxa "forkhead box A seq...   193  4.4e-13   1
UNIPROTKB|Q28EM1 - symbol:foxj2 "Forkhead box protein J2"...   197  4.5e-13   1
UNIPROTKB|Q6VFT7 - symbol:FOXL2 "Forkhead box protein L2"...   191  4.6e-13   2
UNIPROTKB|Q6VFT6 - symbol:FOXL2 "Forkhead box protein L2"...   191  4.6e-13   2
UNIPROTKB|Q8MIP2 - symbol:FOXL2 "Forkhead box protein L2"...   191  4.6e-13   2
MGI|MGI:2151057 - symbol:Foxn4 "forkhead box N4" species:...   197  4.7e-13   1
UNIPROTKB|Q9PT68 - symbol:foxd5-b "Forkhead box protein D...   193  4.9e-13   1
UNIPROTKB|Q6VFT5 - symbol:FOXL2 "Forkhead box protein L2"...   190  5.4e-13   2
ZFIN|ZDB-GENE-040426-1181 - symbol:foxl1 "forkhead box L1...   193  5.4e-13   1
SGD|S000000661 - symbol:HCM1 "Forkhead transcription fact...   197  5.5e-13   1
UNIPROTKB|E2R0F1 - symbol:FOXJ3 "Uncharacterized protein"...   197  5.8e-13   2
UNIPROTKB|F1NNW9 - symbol:F1NNW9 "Uncharacterized protein...   175  5.9e-13   1
ZFIN|ZDB-GENE-031126-3 - symbol:foxi3a "forkhead box I3a"...   192  6.4e-13   1
MGI|MGI:1347469 - symbol:Foxl1 "forkhead box L1" species:...   191  7.1e-13   1
FB|FBgn0004895 - symbol:fd64A "forkhead domain 64A" speci...   192  7.3e-13   1
UNIPROTKB|B7ZAP5 - symbol:FOXA1 "Hepatocyte nuclear facto...   194  7.3e-13   1
UNIPROTKB|Q1PA44 - symbol:FoxA "Uncharacterized protein" ...   194  7.4e-13   1
UNIPROTKB|Q66IG8 - symbol:foxj1.2 "Forkhead box protein J...   180  7.8e-13   2
UNIPROTKB|E2QSA5 - symbol:FOXA1 "Uncharacterized protein"...   194  7.9e-13   1
ZFIN|ZDB-GENE-050419-153 - symbol:foxf1 "forkhead box F1"...   192  8.3e-13   1
RGD|2807 - symbol:Foxa1 "forkhead box A1" species:10116 "...   194  8.5e-13   1
UNIPROTKB|Q5WM45 - symbol:foxd5 "Forkhead box protein D5"...   191  8.5e-13   1
UNIPROTKB|F1SHK8 - symbol:FOXA1 "Uncharacterized protein"...   194  8.5e-13   1
MGI|MGI:1347472 - symbol:Foxa1 "forkhead box A1" species:...   194  8.5e-13   1
UNIPROTKB|P55317 - symbol:FOXA1 "Hepatocyte nuclear facto...   194  8.7e-13   1
UNIPROTKB|F6UTY3 - symbol:FOXA1 "Uncharacterized protein"...   194  9.1e-13   1
UNIPROTKB|Q4H3I3 - symbol:Ci-FoxJ2 "Transcription factor ...   195  9.3e-13   1
UNIPROTKB|P33205 - symbol:foxa4-a "Forkhead box protein A...   192  9.6e-13   1
UNIPROTKB|F1S6I8 - symbol:FOXL1 "Uncharacterized protein"...   189  1.2e-12   1
UNIPROTKB|F1LW53 - symbol:Foxn4 "Protein Foxn4" species:1...   193  1.2e-12   1
UNIPROTKB|H9L2W5 - symbol:FOXD1 "Forkhead box protein D1"...   172  1.3e-12   1
RGD|621715 - symbol:Foxd3 "forkhead box D3" species:10116...   172  1.3e-12   1

WARNING:  Descriptions of 482 database sequences were not reported due to the
          limiting value of parameter V = 100.


>UNIPROTKB|Q3Y598 [details] [associations]
            symbol:FOXA3 "Hepatocyte nuclear factor 3-gamma"
            species:9913 "Bos taurus" [GO:0070368 "positive regulation of
            hepatocyte differentiation" evidence=IBA] [GO:0060487 "lung
            epithelial cell differentiation" evidence=IRD] [GO:0060441
            "epithelial tube branching involved in lung morphogenesis"
            evidence=IRD] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0048665
            "neuron fate specification" evidence=IBA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0021999 "neural plate anterior/posterior
            regionalization" evidence=IBA] [GO:0019904 "protein domain specific
            binding" evidence=IBA] [GO:0009790 "embryo development"
            evidence=IBA] [GO:0009267 "cellular response to starvation"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0008285 "negative regulation of cell proliferation"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0007420 "brain development" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0001678
            "cellular glucose homeostasis" evidence=IBA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] InterPro:IPR001766
            InterPro:IPR013638 InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0019904 GO:GO:0008285 GO:GO:0007420
            GO:GO:0043565 GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0007283 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0009790 GO:GO:0044212 GO:GO:0003690 GO:GO:0009267
            GO:GO:0008134 GO:GO:0048665 GO:GO:0051090 GO:GO:0001678
            GO:GO:0021999 eggNOG:COG5025 GeneTree:ENSGT00700000104475
            InterPro:IPR018533 Pfam:PF09354 HOGENOM:HOG000231817
            HOVERGEN:HBG006621 EMBL:DQ157763 EMBL:BC116076 IPI:IPI00698928
            RefSeq:NP_001028291.1 UniGene:Bt.49749 ProteinModelPortal:Q3Y598
            SMR:Q3Y598 Ensembl:ENSBTAT00000016056 GeneID:503622 KEGG:bta:503622
            CTD:3171 InParanoid:Q3Y598 KO:K08038 OMA:VYYQGVY OrthoDB:EOG43R3NB
            NextBio:20866246 GO:GO:0070368 Uniprot:Q3Y598
        Length = 351

 Score = 226 (84.6 bits), Expect = 2.6e-17, P = 2.6e-17
 Identities = 60/170 (35%), Positives = 85/170 (50%)

Query:    49 HRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY +N  RW+NS+RH+LS N  
Sbjct:   116 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDC 175

Query:   107 FRKGVKASQ--GAGHLWNL--SDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYS--- 159
             F K  ++    G G  W L  S     E+      +K R K   E ++    G   S   
Sbjct:   176 FVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQK-RFKLE-EKVKKGGGGSSASRNS 233

Query:   160 -GQNSTET-PAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPY 207
              G  ST T PA ++ + PQPQP P    +   D +   +  S  + + PY
Sbjct:   234 AGSASTATAPAATVASTPQPQPPPPEPEAQGGDEVGALDCGSPAAPSTPY 283


>UNIPROTKB|F1RM41 [details] [associations]
            symbol:FOXA3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0009267 "cellular
            response to starvation" evidence=IEA] [GO:0007283 "spermatogenesis"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0001678 "cellular glucose homeostasis"
            evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0007283 GO:GO:0044212
            GO:GO:0009267 GO:GO:0001678 GeneTree:ENSGT00700000104475
            InterPro:IPR018533 Pfam:PF09354 KO:K08038 OMA:VYYQGVY EMBL:FP102597
            RefSeq:XP_003127277.1 UniGene:Ssc.18674 Ensembl:ENSSSCT00000003431
            GeneID:100512416 KEGG:ssc:100512416 Uniprot:F1RM41
        Length = 350

 Score = 222 (83.2 bits), Expect = 9.7e-17, P = 9.7e-17
 Identities = 59/170 (34%), Positives = 85/170 (50%)

Query:    49 HRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY +N  RW+NS+RH+LS N  
Sbjct:   116 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDC 175

Query:   107 FRKGVKASQ--GAGHLWNL--SDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYS--- 159
             F K  ++    G G  W L  S     E+      +K R K   E ++    G   S   
Sbjct:   176 FVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQK-RFKLE-EKVKKGGGGTSASRNS 233

Query:   160 --GQNSTETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPY 207
                 +ST TPA  + + P+PQP P    + + + +   +  S  S T PY
Sbjct:   234 AGSASSTSTPAAPVTSPPKPQPPPAEPEAQSAEDVGALDCGSPPSST-PY 282


>FB|FBgn0031086 [details] [associations]
            symbol:fd19B "forkhead domain 19B" species:7227 "Drosophila
            melanogaster" [GO:0005634 "nucleus" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0016199
            "axon midline choice point recognition" evidence=IBA] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=IBA] [GO:0048665 "neuron fate specification"
            evidence=IBA] [GO:0002052 "positive regulation of neuroblast
            proliferation" evidence=IBA] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IBA] [GO:0045787 "positive regulation of cell
            cycle" evidence=IBA] [GO:0009888 "tissue development" evidence=IBA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0035058
            "nonmotile primary cilium assembly" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IBA]
            [GO:0045665 "negative regulation of neuron differentiation"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0009953 "dorsal/ventral pattern formation"
            evidence=IBA] [GO:0007380 "specification of segmental identity,
            head" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0009792 GO:GO:0007346 EMBL:AE014298
            GO:GO:0043565 GO:GO:0045944 GO:GO:0016199 GO:GO:0045665
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0009953 GO:GO:0008134
            GO:GO:0048665 GO:GO:0045787 GO:GO:0002052 GO:GO:0051090
            GO:GO:0035058 GO:GO:0007380 GO:GO:0009888 HSSP:Q63245
            GeneTree:ENSGT00700000104094 RefSeq:NP_608369.1 UniGene:Dm.27592
            ProteinModelPortal:Q9W5X5 SMR:Q9W5X5 STRING:Q9W5X5 PRIDE:Q9W5X5
            EnsemblMetazoa:FBtr0070032 GeneID:33010 KEGG:dme:Dmel_CG9571
            UCSC:CG9571-RA CTD:33010 FlyBase:FBgn0031086 InParanoid:Q9W5X5
            OrthoDB:EOG4280HS PhylomeDB:Q9W5X5 GenomeRNAi:33010 NextBio:781504
            ArrayExpress:Q9W5X5 Bgee:Q9W5X5 Uniprot:Q9W5X5
        Length = 260

 Score = 206 (77.6 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 49/134 (36%), Positives = 70/134 (52%)

Query:    18 SPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQAL--KEKHQLTVSGI 75
             SP+    + S     S S          AK++ KP FTY+ LI  A+    + +LT+SGI
Sbjct:    25 SPISKHNSGSSFSSCSSSSSNSSSDSMAAKSNAKPAFTYSALIVMAIWSSSEKRLTLSGI 84

Query:    76 YQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNLS----DMEPV 129
              +WI++ FPYY      W+NS+RHNLS+NP F +  +A    G GH W L     D+   
Sbjct:    85 CKWIADNFPYYRTRKSVWQNSIRHNLSLNPFFVRVPRALDDPGRGHYWALDPYAEDLSIG 144

Query:   130 EDASK---SNWKKN 140
             E   +   SNW++N
Sbjct:   145 ETTGRLRRSNWQQN 158


>UNIPROTKB|E2RNB4 [details] [associations]
            symbol:FOXA3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0009267 "cellular response to starvation" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0001678 "cellular
            glucose homeostasis" evidence=IEA] [GO:0019904 "protein domain
            specific binding" evidence=IEA] [GO:0008134 "transcription factor
            binding" evidence=IEA] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0007283 GO:GO:0044212
            GO:GO:0009267 GO:GO:0001678 GeneTree:ENSGT00700000104475
            InterPro:IPR018533 Pfam:PF09354 CTD:3171 KO:K08038 OMA:VYYQGVY
            EMBL:AAEX03000870 RefSeq:XP_541549.3 ProteinModelPortal:E2RNB4
            Ensembl:ENSCAFT00000007001 GeneID:484434 KEGG:cfa:484434
            NextBio:20858576 Uniprot:E2RNB4
        Length = 350

 Score = 217 (81.4 bits), Expect = 4.4e-16, P = 4.4e-16
 Identities = 59/170 (34%), Positives = 83/170 (48%)

Query:    49 HRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY +N  RW+NS+RH+LS N  
Sbjct:   116 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDC 175

Query:   107 FRKGVKASQ--GAGHLWNL--SDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQN 162
             F K  ++    G G  W L  S     E+      +K R K   E ++    G   S  +
Sbjct:   176 FVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQK-RFKLE-EKVKKGTGGTSTSKNS 233

Query:   163 -----STETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPY 207
                  S  TPA  + + PQPQP P    +   + +   +  S  S T PY
Sbjct:   234 AGAAASATTPAAQVTSPPQPQPPPPEPEAPGGEDVGALDCGSPPSST-PY 282


>MGI|MGI:1347477 [details] [associations]
            symbol:Foxa3 "forkhead box A3" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0001678 "cellular glucose
            homeostasis" evidence=IMP] [GO:0003677 "DNA binding"
            evidence=ISO;IDA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISO;IMP] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007420 "brain
            development" evidence=IBA] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=ISO;IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009267 "cellular response to starvation"
            evidence=IMP] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0016568 "chromatin modification" evidence=IEA] [GO:0019904
            "protein domain specific binding" evidence=IBA] [GO:0021999 "neural
            plate anterior/posterior regionalization" evidence=IBA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0043565 "sequence-specific
            DNA binding" evidence=IDA] [GO:0044212 "transcription regulatory
            region DNA binding" evidence=ISO] [GO:0044428 "nuclear part"
            evidence=ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO;IGI] [GO:0048665
            "neuron fate specification" evidence=IBA] [GO:0051090 "regulation
            of sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0070368 "positive regulation of hepatocyte
            differentiation" evidence=ISO;IBA] Reactome:REACT_13641
            InterPro:IPR001766 InterPro:IPR013638 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 MGI:MGI:1347477
            GO:GO:0005829 GO:GO:0019904 GO:GO:0008285 GO:GO:0007420
            GO:GO:0043565 GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0007283 GO:GO:0016568 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000122 GO:GO:0008301 GO:GO:0009790 GO:GO:0044212
            Reactome:REACT_127416 GO:GO:0003690 GO:GO:0009267 GO:GO:0008134
            GO:GO:0031018 GO:GO:0048665 GO:GO:0051090 GO:GO:0001678
            GO:GO:0021999 eggNOG:COG5025 GeneTree:ENSGT00700000104475
            InterPro:IPR018533 Pfam:PF09354 HOGENOM:HOG000231817
            HOVERGEN:HBG006621 CTD:3171 KO:K08038 OMA:VYYQGVY OrthoDB:EOG43R3NB
            GO:GO:0070368 EMBL:X74938 IPI:IPI00119677 PIR:C54258
            RefSeq:NP_032286.1 UniGene:Mm.42260 ProteinModelPortal:P35584
            SMR:P35584 STRING:P35584 PhosphoSite:P35584 PRIDE:P35584
            Ensembl:ENSMUST00000036018 GeneID:15377 KEGG:mmu:15377
            UCSC:uc009fkd.1 InParanoid:P35584 NextBio:288034 Bgee:P35584
            CleanEx:MM_FOXA3 Genevestigator:P35584
            GermOnline:ENSMUSG00000040891 Uniprot:P35584
        Length = 353

 Score = 217 (81.4 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 57/170 (33%), Positives = 85/170 (50%)

Query:    49 HRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY +N  RW+NS+RH+LS N  
Sbjct:   117 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDC 176

Query:   107 FRKGVKASQ--GAGHLWNL--SDMEPVEDAS----KSNWK-KNRLKTYLESLQPSEWGDD 157
             F K  ++    G G  W L  S     E+      +  +K + + K    +   S  G  
Sbjct:   177 FVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFKLEEKAKKGNSATSASRNGTA 236

Query:   158 YSGQNSTETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPY 207
              S  ++T T A ++ +  QPQP P    + + D +   +  S  S T PY
Sbjct:   237 GSATSATTTAATAVTSPAQPQPTPSEPEAQSGDDVGGLDCASPPSST-PY 285


>UNIPROTKB|Q6LD29 [details] [associations]
            symbol:foxa1-a "Forkhead box protein A1-A" species:8355
            "Xenopus laevis" [GO:0003677 "DNA binding" evidence=NAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0003677 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 HSSP:Q99958
            InterPro:IPR018533 Pfam:PF09354 HOVERGEN:HBG006621 EMBL:U04873
            ProteinModelPortal:Q6LD29 SMR:Q6LD29 Uniprot:Q6LD29
        Length = 429

 Score = 219 (82.2 bits), Expect = 6.2e-16, P = 6.2e-16
 Identities = 70/278 (25%), Positives = 122/278 (43%)

Query:    17 FSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKE--KHQLTVSG 74
             +S M P  +       + +   D      +  H KPP++Y  LI  A+++     LT+S 
Sbjct:   125 YSSMNPGMSPMAYGSSNMNRARDTKTFRRSYPHAKPPYSYISLITMAIQQAPSKMLTLSE 184

Query:    75 IYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNLS-DMEPVED 131
             IYQWI + FPYY QN  RW+NS+RH+LS N  F K  ++    G G  W L  D   + +
Sbjct:   185 IYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWTLHPDSGNMFE 244

Query:   132 ASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQPLNTMSLAHDP 191
                   ++ R K   E  Q  +   D  G+     P+  ++ +     Q  ++ S+++  
Sbjct:   245 NGCYLRRQKRFKC--EKTQGGKGNQD--GRKDHSGPSSPLQRVHGKSSQMDSSSSMSNPS 300

Query:   192 LQPFEVYSQESKTFPYEECKDVLYIQSNDNVLYTPHEDHKLYHNDNVLYTPGEDHKLYQY 251
               P  +    S      E K  +    +    +  H  H L H  ++ +  G+ H  + +
Sbjct:   301 SSPQALEHNGSNG----EMKPQVAAGPSPLSSHQNHSTHSLAHESHI-HLKGDPHYSFNH 355

Query:   252 EPSKNLIMAAYDGGQEKVEIFASDTISKNLIMAAYDGG 289
               S N +M++ +  Q K++  A +   +    ++Y GG
Sbjct:   356 PFSINNLMSSSEQ-QHKLDFKAYEQALQQY--SSYGGG 390


>UNIPROTKB|Q5J7N5 [details] [associations]
            symbol:FOXL2 "Transcription factor FOXL2" species:9031
            "Gallus gallus" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0001541 "ovarian follicle development"
            evidence=IBA] [GO:0002074 "extraocular skeletal muscle development"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006309 "apoptotic DNA fragmentation"
            evidence=ISS;IBA] [GO:0006917 "induction of apoptosis"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0019101 "female somatic sex determination" evidence=IBA]
            [GO:0030331 "estrogen receptor binding" evidence=IBA] [GO:0031624
            "ubiquitin conjugating enzyme binding" evidence=IBA] [GO:0043028
            "cysteine-type endopeptidase regulator activity involved in
            apoptotic process" evidence=ISS;IBA] [GO:0043280 "positive
            regulation of cysteine-type endopeptidase activity involved in
            apoptotic process" evidence=ISS;IBA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0048048 "embryonic eye morphogenesis"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0042703
            "menstruation" evidence=IEA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0060014 "granulosa
            cell differentiation" evidence=IEA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0043065 "positive
            regulation of apoptotic process" evidence=ISS] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0045892
            GO:GO:0006917 GO:GO:0043565 GO:GO:0045944 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0003690 GO:GO:0043280 GO:GO:0001541 GO:GO:0006309
            GO:GO:0008134 GO:GO:0048048 GO:GO:0007389 GO:GO:0030331
            GO:GO:0051090 GO:GO:0002074 GO:GO:0060014 eggNOG:COG5025
            GO:GO:0019101 GeneTree:ENSGT00700000104135 KO:K09405 CTD:668
            HOGENOM:HOG000218632 HOVERGEN:HBG051651 OMA:QPAELSM GO:GO:0043028
            GO:GO:0031624 OrthoDB:EOG4TF0KX EMBL:AADN02024206 EMBL:AY487165
            IPI:IPI00589814 RefSeq:NP_001012630.1 UniGene:Gga.7539 SMR:Q5J7N5
            STRING:Q5J7N5 Ensembl:ENSGALT00000033768 GeneID:503512
            KEGG:gga:503512 InParanoid:Q5J7N5 NextBio:20866179 Uniprot:Q5J7N5
        Length = 305

 Score = 210 (79.0 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 70/234 (29%), Positives = 107/234 (45%)

Query:    27 SHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFP 84
             S +PE  + E+     P      +KPP++Y  LI  A++E  + +LT+SGIYQ+I  +FP
Sbjct:    23 SKEPERGKEELSAEKGPEKPDPSQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIISKFP 82

Query:    85 YYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA--GHLWNLSDMEPV-EDA-SKSNWKKN 140
             +Y +N   W+NS+RHNLS+N  F K  +   G   G+ W L   +P  ED   K N+++ 
Sbjct:    83 FYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTL---DPACEDMFEKGNYRRR 139

Query:   141 R-LKTYLES----LQPSE--WGDDYSGQNSTETPAPS--MET---MPQPQ-PQPLNTMSL 187
             R +K          QP +  +G D  G  S      S  M     +PQP  P P  +  +
Sbjct:   140 RRMKRPFRPPPTHFQPGKSLFGPDGYGYLSPPKYLQSTFMNNSWPLPQPPAPVPYASCQM 199

Query:   188 AHDPLQPFEV--YSQESKTFPYEECKDVLYIQSNDNVLYTPHEDHKLYHNDNVL 239
             +   + P  V   S  +   PY   + V      ++     H  H   H+   L
Sbjct:   200 SGGSVSPVNVKGLSGPASYGPYSRVQSVALPGMVNSYNGVAHPHHPHAHHPQQL 253


>UNIPROTKB|H9L130 [details] [associations]
            symbol:FOXA2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0008134 "transcription factor binding" evidence=IEA]
            [GO:0019904 "protein domain specific binding" evidence=IEA]
            [GO:0000432 "positive regulation of transcription from RNA
            polymerase II promoter by glucose" evidence=IEA] [GO:0000433
            "negative regulation of transcription from RNA polymerase II
            promoter by glucose" evidence=IEA] [GO:0000978 "RNA polymerase II
            core promoter proximal region sequence-specific DNA binding"
            evidence=IEA] [GO:0001701 "in utero embryonic development"
            evidence=IEA] [GO:0001705 "ectoderm formation" evidence=IEA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008344 "adult locomotory
            behavior" evidence=IEA] [GO:0010719 "negative regulation of
            epithelial to mesenchymal transition" evidence=IEA] [GO:0021533
            "cell differentiation in hindbrain" evidence=IEA] [GO:0021904
            "dorsal/ventral neural tube patterning" evidence=IEA] [GO:0023019
            "signal transduction involved in regulation of gene expression"
            evidence=IEA] [GO:0030193 "regulation of blood coagulation"
            evidence=IEA] [GO:0031018 "endocrine pancreas development"
            evidence=IEA] [GO:0032525 "somite rostral/caudal axis
            specification" evidence=IEA] [GO:0033132 "negative regulation of
            glucokinase activity" evidence=IEA] [GO:0040019 "positive
            regulation of embryonic development" evidence=IEA] [GO:0043433
            "negative regulation of sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0045665 "negative regulation of
            neuron differentiation" evidence=IEA] [GO:0045666 "positive
            regulation of neuron differentiation" evidence=IEA] [GO:0045945
            "positive regulation of transcription from RNA polymerase III
            promoter" evidence=IEA] [GO:0048468 "cell development"
            evidence=IEA] [GO:0048665 "neuron fate specification" evidence=IEA]
            [GO:0060441 "epithelial tube branching involved in lung
            morphogenesis" evidence=IEA] [GO:0060487 "lung epithelial cell
            differentiation" evidence=IEA] [GO:0061178 "regulation of insulin
            secretion involved in cellular response to glucose stimulus"
            evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
            evidence=IEA] [GO:0090009 "primitive streak formation"
            evidence=IEA] [GO:2000543 "positive regulation of gastrulation"
            evidence=IEA] [GO:2000971 "negative regulation of detection of
            glucose" evidence=IEA] [GO:2000976 "regulation of transcription
            from RNA polymerase II promoter involved in detection of glucose"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GeneTree:ENSGT00700000104475
            EMBL:AADN02065893 Ensembl:ENSGALT00000029590 OMA:PASASPC
            Uniprot:H9L130
        Length = 264

 Score = 198 (74.8 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 49/131 (37%), Positives = 66/131 (50%)

Query:     4 ASLEPMELKPPGQFSPME---P-CQTSSHKPEPSQSEVEDRCCPS---HAKTHRKPPFTY 56
             A L P  +   GQ   M    P    +S  P   QS +     P     + TH KPP++Y
Sbjct:     6 AHLSPSMISMGGQAGSMNALAPYTNMNSMSPIYGQSNLNRSRDPKTYRRSYTHAKPPYSY 65

Query:    57 TELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKAS 114
               LI  A+++     LT+S IYQWI + FP+Y QN  RW+NS+RH+LS N  F K  ++ 
Sbjct:    66 ISLITMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSP 125

Query:   115 Q--GAGHLWNL 123
                G G  W L
Sbjct:   126 DKPGKGSFWTL 136


>UNIPROTKB|E2R718 [details] [associations]
            symbol:FOXL2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            Ensembl:ENSCAFT00000012132 Uniprot:E2R718
        Length = 241

 Score = 198 (74.8 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 51/138 (36%), Positives = 75/138 (54%)

Query:    11 LKP-PGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKE--K 67
             L P PG+ +  EP   +   P PS         P      +KPP++Y  LI  A++E  +
Sbjct:    16 LAPEPGR-AAKEP--EAPPPPPPSPGGGGAGAAPEKPDPAQKPPYSYVALIAMAIRESAE 72

Query:    68 HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA--GHLWNLSD 125
              +LT+SGIYQ+I  +FP+Y +N   W+NS+RHNLS+N  F K  +   G   G+ W L  
Sbjct:    73 KRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTL-- 130

Query:   126 MEPV-EDA-SKSNWKKNR 141
              +P  ED   K N+++ R
Sbjct:   131 -DPACEDMFEKGNYRRRR 147


>ZFIN|ZDB-GENE-081022-71 [details] [associations]
            symbol:zgc:194189 "zgc:194189" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-081022-71 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 eggNOG:COG5025
            GeneTree:ENSGT00700000104135 OrthoDB:EOG4MCX19 HOGENOM:HOG000218632
            HOVERGEN:HBG051651 EMBL:CT573456 EMBL:BC162838 IPI:IPI00502363
            RefSeq:NP_001122282.1 UniGene:Dr.148363 Ensembl:ENSDART00000020616
            GeneID:100004081 KEGG:dre:100004081 OMA:RRVKRPY NextBio:20786110
            Uniprot:B3DHP4
        Length = 260

 Score = 197 (74.4 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 46/125 (36%), Positives = 68/125 (54%)

Query:    42 CPSHAKTHRKPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRH 99
             CP  A    KPP++Y  LI  A++E    +LT++ IY +I  +FPYY +N   W+NS+RH
Sbjct:    26 CPGAAPAPEKPPYSYVALIAMAIRESEDKKLTLNDIYSYIISKFPYYEKNKKGWQNSIRH 85

Query:   100 NLSINPHFRKGVKASQGA--GHLWNLSDMEPVEDASKSNWKKNRL--KTYLESLQPS--E 153
             NLS+N  F K  + S G   G+ W L D    +   K N+++ R   + Y  +  PS   
Sbjct:    86 NLSLNECFVKIPRESGGERKGNFWTL-DPAFNDMFEKGNYRRRRRVKRPYRPAALPSGYN 144

Query:   154 WGDDY 158
             + D Y
Sbjct:   145 FADPY 149


>UNIPROTKB|P32315 [details] [associations]
            symbol:foxa1-b "Forkhead box protein A1-B" species:8355
            "Xenopus laevis" [GO:0003677 "DNA binding" evidence=NAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0003677 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            InterPro:IPR018533 Pfam:PF09354 HOVERGEN:HBG006621 KO:K09387
            EMBL:M93658 EMBL:BC047130 PIR:I51580 RefSeq:NP_001080063.1
            UniGene:Xl.52787 ProteinModelPortal:P32315 SMR:P32315 GeneID:379755
            KEGG:xla:379755 CTD:379755 Xenbase:XB-GENE-6256649 Uniprot:P32315
        Length = 427

 Score = 214 (80.4 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 68/263 (25%), Positives = 119/263 (45%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY QN  RW+NS+RH+LS N  
Sbjct:   155 HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDC 214

Query:   107 FRKGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNS 163
             F K  ++    G G  W L  D   + +      ++ R K   E  Q  +   D  G+  
Sbjct:   215 FIKVSRSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFKC--EKTQGGKGNQD--GRKD 270

Query:   164 TETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLYIQSNDNVL 223
                P+  +  +     Q  ++ S+++    P  +    S      E K  +    +    
Sbjct:   271 HSGPSSPLHRVHGKSSQMDSSSSMSNPSSSPQALEHNGSNG----EMKPQVAAGPSPLSS 326

Query:   224 YTPHEDHKLYHNDNVLYTPGEDHKLYQYEPSKNLIMAAYDGGQEKVEIFASDTISKNLIM 283
             +  H  H L H  ++ +  G+ H  + +  S N +M++ +  Q K++  A +   +    
Sbjct:   327 HQNHSTHSLAHETHI-HLKGDPHYSFNHPFSINNLMSSSEQ-QHKLDFKAYEQALQQY-- 382

Query:   284 AAYDGGQEKVEIFASDTISRKSI 306
             ++Y GG + + + +     R +I
Sbjct:   383 SSYGGGLQGMPLGSPSMTGRGTI 405


>ZFIN|ZDB-GENE-050208-663 [details] [associations]
            symbol:foxq2 "forkhead box Q2" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005667 "transcription factor
            complex" evidence=IBA] [GO:0051090 "regulation of sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-050208-663 Gene3D:1.10.10.10 InterPro:IPR011991
            GeneTree:ENSGT00700000104051 EMBL:BX088720 IPI:IPI00608545
            UniGene:Dr.120163 Ensembl:ENSDART00000136744 HOVERGEN:HBG083031
            Uniprot:F6PES3
        Length = 263

 Score = 195 (73.7 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 45/148 (30%), Positives = 71/148 (47%)

Query:    12 KPPGQFSPMEPCQTSSHKPEP-------SQSEVEDRCCPSHAKTH-------RKPPFTYT 57
             +P    +P E  Q++ ++PE        S+   E      H  TH        KP  +Y 
Sbjct:    53 EPEDNVNPSEDLQSTVNEPEQKTLSEQDSEKSEEQENDEDHENTHVKSEGTDEKPAQSYI 112

Query:    58 ELIEQAL--KEKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ 115
              LI  A+   ++ +L +  IYQWI + +PY+   D  W+NSVRHNLS+N  F K  ++  
Sbjct:   113 ALISMAILDSDEKKLLLCDIYQWIMDHYPYFKSKDKNWRNSVRHNLSLNECFIKAGRSDN 172

Query:   116 GAGHLWNLSDMEPVEDASKSNWKKNRLK 143
             G GH W +      +D S  ++ + R +
Sbjct:   173 GKGHFWAIHPAN-FQDFSNGDYHRRRAR 199


>UNIPROTKB|E2RNQ6 [details] [associations]
            symbol:FOXA2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:2000543 "positive regulation of gastrulation"
            evidence=ISS] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0090009 "primitive streak
            formation" evidence=ISS] [GO:0040019 "positive regulation of
            embryonic development" evidence=ISS] [GO:2000976 "regulation of
            transcription from RNA polymerase II promoter involved in detection
            of glucose" evidence=IEA] [GO:2000971 "negative regulation of
            detection of glucose" evidence=IEA] [GO:0071542 "dopaminergic
            neuron differentiation" evidence=IEA] [GO:0061178 "regulation of
            insulin secretion involved in cellular response to glucose
            stimulus" evidence=IEA] [GO:0060487 "lung epithelial cell
            differentiation" evidence=IEA] [GO:0060441 "epithelial tube
            branching involved in lung morphogenesis" evidence=IEA] [GO:0048665
            "neuron fate specification" evidence=IEA] [GO:0048468 "cell
            development" evidence=IEA] [GO:0045945 "positive regulation of
            transcription from RNA polymerase III promoter" evidence=IEA]
            [GO:0045666 "positive regulation of neuron differentiation"
            evidence=IEA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IEA] [GO:0043433 "negative regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0033132 "negative regulation of glucokinase
            activity" evidence=IEA] [GO:0032525 "somite rostral/caudal axis
            specification" evidence=IEA] [GO:0031018 "endocrine pancreas
            development" evidence=IEA] [GO:0030193 "regulation of blood
            coagulation" evidence=IEA] [GO:0023019 "signal transduction
            involved in regulation of gene expression" evidence=IEA]
            [GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA]
            [GO:0021533 "cell differentiation in hindbrain" evidence=IEA]
            [GO:0010719 "negative regulation of epithelial to mesenchymal
            transition" evidence=IEA] [GO:0008344 "adult locomotory behavior"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0001705 "ectoderm
            formation" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0000978 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding"
            evidence=IEA] [GO:0000433 "negative regulation of transcription
            from RNA polymerase II promoter by glucose" evidence=IEA]
            [GO:0000432 "positive regulation of transcription from RNA
            polymerase II promoter by glucose" evidence=IEA] [GO:0019904
            "protein domain specific binding" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] InterPro:IPR001766
            InterPro:IPR013638 InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0045893 GO:GO:0071542
            GO:GO:0001701 GO:GO:0008344 GO:GO:0045665 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003705 GO:GO:0000978 GO:GO:0045666
            GO:GO:0043433 GO:GO:0040019 GO:GO:0031018 GO:GO:0045945
            GO:GO:0030193 GO:GO:0048468 GO:GO:0060487 GO:GO:0048665
            GO:GO:0021904 GO:GO:0060441 GO:GO:0010719 GO:GO:0023019
            GO:GO:0090009 GO:GO:0061178 GeneTree:ENSGT00700000104475
            GO:GO:0000433 GO:GO:0032525 GO:GO:0021533 KO:K08035
            InterPro:IPR018533 Pfam:PF09354 CTD:3170 OMA:EHKRGGL GO:GO:0001705
            GO:GO:2000971 GO:GO:0033132 GO:GO:2000543 GO:GO:0000432
            GO:GO:2000976 EMBL:AAEX03013741 RefSeq:XP_542865.2
            Ensembl:ENSCAFT00000008326 GeneID:485742 KEGG:cfa:485742
            Uniprot:E2RNQ6
        Length = 468

 Score = 202 (76.2 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
 Identities = 47/127 (37%), Positives = 65/127 (51%)

Query:     5 SLEPMELKPPGQFSPMEP-CQTSSHKPEPSQ---SEVEDRCCPSHAKTHRKPPFTYTELI 60
             SL P+  +  G    + P    +S  P   Q   S   D      + TH KPP++Y  LI
Sbjct:   115 SLSPLGGQAAGAMGGLAPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKPPYSYKSLI 174

Query:    61 EQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--G 116
               A+++     LT+S IYQWI + FP+Y QN  RW+NS+RH+LS N  F K  ++    G
Sbjct:   175 TMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPG 234

Query:   117 AGHLWNL 123
              G  W L
Sbjct:   235 KGSFWTL 241

 Score = 51 (23.0 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
 Identities = 15/82 (18%), Positives = 32/82 (39%)

Query:   167 PAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLYIQSNDNVLYTP 226
             P+P  +   Q Q    + +   H P  P E + +    + +     +  + S++   +  
Sbjct:   343 PSPGQQQQQQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHS 402

Query:   227 HEDHKLYHND-----NVLYTPG 243
             H  H+ +  D      V++ PG
Sbjct:   403 HHHHQPHKMDLKAYEQVMHYPG 424


>UNIPROTKB|F6Y816 [details] [associations]
            symbol:FOXL2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00700000104135 Ensembl:ENSCAFT00000012132
            EMBL:AAEX03013625 OMA:RVTACRR Uniprot:F6Y816
        Length = 254

 Score = 193 (73.0 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 50/139 (35%), Positives = 74/139 (53%)

Query:    11 LKP-PGQFSPMEPCQTSSHKPEPSQSEVEDR-CCPSHAKTHRKPPFTYTELIEQALKE-- 66
             L P PG+ +  EP       P P +         P      +KPP++Y  LI  A++E  
Sbjct:    16 LAPEPGR-AAKEPEAPPPPPPSPGKGGGGGGGAAPEKPDPAQKPPYSYVALIAMAIRESA 74

Query:    67 KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA--GHLWNLS 124
             + +LT+SGIYQ+I  +FP+Y +N   W+NS+RHNLS+N  F K  +   G   G+ W L 
Sbjct:    75 EKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTL- 133

Query:   125 DMEPV-EDA-SKSNWKKNR 141
               +P  ED   K N+++ R
Sbjct:   134 --DPACEDMFEKGNYRRRR 150


>ZFIN|ZDB-GENE-990415-78 [details] [associations]
            symbol:foxa1 "forkhead box A1" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA;IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA;IBA] [GO:0048319 "axial
            mesoderm morphogenesis" evidence=IGI] [GO:0060487 "lung epithelial
            cell differentiation" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0010817 "regulation of hormone levels"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0009790 "embryo
            development" evidence=IBA] [GO:0045666 "positive regulation of
            neuron differentiation" evidence=IBA] [GO:0003690 "double-stranded
            DNA binding" evidence=IBA] [GO:0060441 "epithelial tube branching
            involved in lung morphogenesis" evidence=IBA] [GO:0042593 "glucose
            homeostasis" evidence=IBA] [GO:0005667 "transcription factor
            complex" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0048665 "neuron fate specification" evidence=IBA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001766
            InterPro:IPR013638 InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 ZFIN:ZDB-GENE-990415-78 GO:GO:0019904 GO:GO:0043565
            GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0042593
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0009790
            GO:GO:0003690 GO:GO:0045666 GO:GO:0008134 GO:GO:0007389
            GO:GO:0060487 GO:GO:0048665 GO:GO:0051090 GO:GO:0010817
            GO:GO:0060441 GO:GO:0048319 HSSP:Q99958 InterPro:IPR018533
            Pfam:PF09354 HOVERGEN:HBG006621 EMBL:AY247950 IPI:IPI00496878
            UniGene:Dr.75817 ProteinModelPortal:Q800Q3 SMR:Q800Q3 STRING:Q800Q3
            InParanoid:Q800Q3 ArrayExpress:Q800Q3 Uniprot:Q800Q3
        Length = 427

 Score = 211 (79.3 bits), Expect = 6.0e-15, P = 6.0e-15
 Identities = 66/262 (25%), Positives = 119/262 (45%)

Query:    17 FSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKE--KHQLTVSG 74
             ++ M P  +S    +P+ +   D      +  H KPP++Y  LI  A+++     LT+S 
Sbjct:   123 YTSMSPTMSSMTYAQPNLNRARDNKTFRRSYPHAKPPYSYISLITMAIQQAPSKMLTLSE 182

Query:    75 IYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNLS-DMEPVED 131
             IYQWI + FPYY QN  RW+NS+RH+LS N  F K  ++    G G  W L  D   + +
Sbjct:   183 IYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVSRSPDKPGKGSYWTLHPDSGNMFE 242

Query:   132 ASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQPLNTMSLAHDP 191
                   ++ R K   + L   +  +    Q+S      S  T  +P     ++++ ++  
Sbjct:   243 NGCYLRRQKRFKCD-KKLPDGKRSEGKREQSSGSGSPASDSTSSKPVHMDSSSITSSNQS 301

Query:   192 LQPFEVYSQESKTFPYEECKDVLYIQSNDNVLYTPHEDHKLYHNDNVLYTPGEDHKLYQY 251
               P  +  +   +   E       +      L + H    + H +++L+  G+ H  + +
Sbjct:   302 SSPPSLDHRSGSSANSELKSGGPQVHPVSTSLSSLHS---MAH-ESLLHLKGDPHYSFNH 357

Query:   252 EPSKNLIMAAYDGGQEKVEIFA 273
               S N +M++ +  Q K+E+ A
Sbjct:   358 PFSINNLMSSSEQ-QHKLELKA 378


>RGD|2809 [details] [associations]
            symbol:Foxa3 "forkhead box A3" species:10116 "Rattus norvegicus"
          [GO:0001678 "cellular glucose homeostasis" evidence=ISO;IBA;TAS]
          [GO:0003677 "DNA binding" evidence=ISO;IDA;TAS] [GO:0003690
          "double-stranded DNA binding" evidence=IBA] [GO:0003700
          "sequence-specific DNA binding transcription factor activity"
          evidence=ISO;IDA;TAS] [GO:0003705 "RNA polymerase II distal enhancer
          sequence-specific DNA binding transcription factor activity"
          evidence=IBA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005667
          "transcription factor complex" evidence=IBA] [GO:0006355 "regulation
          of transcription, DNA-dependent" evidence=ISO;IDA] [GO:0006357
          "regulation of transcription from RNA polymerase II promoter"
          evidence=ISO] [GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007420
          "brain development" evidence=IBA] [GO:0008134 "transcription factor
          binding" evidence=IBA] [GO:0008285 "negative regulation of cell
          proliferation" evidence=IMP] [GO:0008301 "DNA binding, bending"
          evidence=IBA] [GO:0009267 "cellular response to starvation"
          evidence=ISO;IBA] [GO:0009790 "embryo development" evidence=IBA]
          [GO:0016568 "chromatin modification" evidence=IEA] [GO:0019904
          "protein domain specific binding" evidence=IBA] [GO:0021999 "neural
          plate anterior/posterior regionalization" evidence=IBA] [GO:0031667
          "response to nutrient levels" evidence=IEP] [GO:0043565
          "sequence-specific DNA binding" evidence=IEA;ISO] [GO:0044212
          "transcription regulatory region DNA binding" evidence=ISO]
          [GO:0044428 "nuclear part" evidence=IDA] [GO:0045944 "positive
          regulation of transcription from RNA polymerase II promoter"
          evidence=ISO;IDA] [GO:0048665 "neuron fate specification"
          evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
          binding transcription factor activity" evidence=IBA] [GO:0060441
          "epithelial tube branching involved in lung morphogenesis"
          evidence=IRD] [GO:0060487 "lung epithelial cell differentiation"
          evidence=IRD] [GO:0070368 "positive regulation of hepatocyte
          differentiation" evidence=IMP] InterPro:IPR001766 InterPro:IPR013638
          InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
          PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
          RGD:2809 GO:GO:0019904 GO:GO:0008285 GO:GO:0007420 GO:GO:0043565
          GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0007283
          GO:GO:0016568 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0009790
          GO:GO:0044212 GO:GO:0003690 GO:GO:0009267 GO:GO:0008134 GO:GO:0048665
          GO:GO:0051090 GO:GO:0001678 GO:GO:0021999 eggNOG:COG5025
          InterPro:IPR018533 Pfam:PF09354 HOGENOM:HOG000231817
          HOVERGEN:HBG006621 CTD:3171 KO:K08038 OrthoDB:EOG43R3NB GO:GO:0070368
          EMBL:L09648 IPI:IPI00213519 PIR:S35090 RefSeq:NP_058773.1
          UniGene:Rn.10949 ProteinModelPortal:P32183 SMR:P32183 STRING:P32183
          PRIDE:P32183 GeneID:25100 KEGG:rno:25100 InParanoid:P32183
          NextBio:605413 Genevestigator:P32183 GermOnline:ENSRNOG00000014256
          Uniprot:P32183
        Length = 354

 Score = 208 (78.3 bits), Expect = 7.1e-15, P = 7.1e-15
 Identities = 51/145 (35%), Positives = 76/145 (52%)

Query:    48 THRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINP 105
             TH KPP++Y  LI  A+++     LT+S IYQWI + FPYY +N  RW+NS+RH+LS N 
Sbjct:   116 THAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFND 175

Query:   106 HFRKGVKASQ--GAGHLWNL--SDMEPVEDAS----KSNWK-KNRLKTYLESLQPSEWGD 156
              F K  ++    G G  W L  S     E+      +  +K + + K    +   +  G 
Sbjct:   176 CFVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFKLEEKAKKGNSATSATRNGT 235

Query:   157 DYSGQNSTETPAPSMETMPQPQPQP 181
               S  ++T T A ++ +  QPQP P
Sbjct:   236 VGSATSATTTAATAVTSPAQPQPTP 260


>UNIPROTKB|Q9Y261 [details] [associations]
            symbol:FOXA2 "Hepatocyte nuclear factor 3-beta"
            species:9606 "Homo sapiens" [GO:0016568 "chromatin modification"
            evidence=IEA] [GO:0008344 "adult locomotory behavior" evidence=IEA]
            [GO:0023019 "signal transduction involved in regulation of gene
            expression" evidence=IEA] [GO:0032525 "somite rostral/caudal axis
            specification" evidence=IEA] [GO:0045945 "positive regulation of
            transcription from RNA polymerase III promoter" evidence=IEA]
            [GO:0071542 "dopaminergic neuron differentiation" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0001701 "in utero
            embryonic development" evidence=IBA] [GO:0001705 "ectoderm
            formation" evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007492 "endoderm development" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0009952
            "anterior/posterior pattern specification" evidence=IBA]
            [GO:0019904 "protein domain specific binding" evidence=IBA]
            [GO:0021533 "cell differentiation in hindbrain" evidence=IBA]
            [GO:0021779 "oligodendrocyte cell fate commitment" evidence=IBA]
            [GO:0021904 "dorsal/ventral neural tube patterning" evidence=IBA]
            [GO:0031018 "endocrine pancreas development" evidence=IDA;IBA]
            [GO:0032289 "central nervous system myelin formation" evidence=IBA]
            [GO:0045665 "negative regulation of neuron differentiation"
            evidence=IBA] [GO:0045666 "positive regulation of neuron
            differentiation" evidence=IBA] [GO:0048665 "neuron fate
            specification" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0060441 "epithelial tube branching involved in
            lung morphogenesis" evidence=IBA] [GO:0060487 "lung epithelial cell
            differentiation" evidence=IBA] [GO:0030193 "regulation of blood
            coagulation" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0044212 "transcription regulatory
            region DNA binding" evidence=IMP] [GO:0070741 "response to
            interleukin-6" evidence=TAS] [GO:0040019 "positive regulation of
            embryonic development" evidence=ISS] [GO:0090009 "primitive streak
            formation" evidence=ISS] [GO:2000543 "positive regulation of
            gastrulation" evidence=ISS] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0000978 "RNA polymerase
            II core promoter proximal region sequence-specific DNA binding"
            evidence=IDA] [GO:0043433 "negative regulation of sequence-specific
            DNA binding transcription factor activity" evidence=IMP]
            [GO:0061178 "regulation of insulin secretion involved in cellular
            response to glucose stimulus" evidence=ISS] [GO:0033132 "negative
            regulation of glucokinase activity" evidence=ISS] [GO:0000433
            "negative regulation of transcription from RNA polymerase II
            promoter by glucose" evidence=ISS] [GO:0000432 "positive regulation
            of transcription from RNA polymerase II promoter by glucose"
            evidence=ISS] [GO:0010719 "negative regulation of epithelial to
            mesenchymal transition" evidence=IMP] [GO:2000049 "positive
            regulation of cell-cell adhesion mediated by cadherin" evidence=IC]
            [GO:2000976 "regulation of transcription from RNA polymerase II
            promoter involved in detection of glucose" evidence=ISS]
            [GO:2000971 "negative regulation of detection of glucose"
            evidence=ISS] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005737 GO:GO:0019904 GO:GO:0071542 GO:GO:0001701
            Pathway_Interaction_DB:hnf3apathway GO:GO:2000049 GO:GO:0008344
            GO:GO:0045665 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016568
            Pathway_Interaction_DB:hnf3bpathway GO:GO:0032868 GO:GO:0005667
            GO:GO:0003705 GO:GO:0000978 GO:GO:0008301 GO:GO:0003690
            GO:GO:0045666 GO:GO:0043433 GO:GO:0040019 GO:GO:0008134
            Pathway_Interaction_DB:hedgehog_glipathway GO:GO:0031018
            GO:GO:0070741 GO:GO:0045945 GO:GO:0007492 GO:GO:0030193
            GO:GO:0060487 GO:GO:0048665 GO:GO:0021904 GO:GO:0060441
            GO:GO:0010719 GO:GO:0023019 GO:GO:0090009 GO:GO:0061178
            eggNOG:COG5025 GO:GO:0000433 GO:GO:0032525 GO:GO:0032289
            GO:GO:0021533 KO:K08035 InterPro:IPR018533 Pfam:PF09354
            HOGENOM:HOG000231817 HOVERGEN:HBG006621
            Pathway_Interaction_DB:hnf3pathway EMBL:AB028021 EMBL:AF147787
            EMBL:AF176110 EMBL:AL121722 EMBL:BC006545 EMBL:BC011780
            EMBL:BC019288 IPI:IPI00031773 IPI:IPI00908346 RefSeq:NP_068556.2
            RefSeq:NP_710141.1 UniGene:Hs.155651 ProteinModelPortal:Q9Y261
            SMR:Q9Y261 MINT:MINT-6610868 STRING:Q9Y261 PhosphoSite:Q9Y261
            DMDM:8134491 PaxDb:Q9Y261 PRIDE:Q9Y261 DNASU:3170
            Ensembl:ENST00000319993 Ensembl:ENST00000377115
            Ensembl:ENST00000419308 GeneID:3170 KEGG:hsa:3170 UCSC:uc002wsn.3
            CTD:3170 GeneCards:GC20M022561 HGNC:HGNC:5022 HPA:CAB001388
            MIM:600288 neXtProt:NX_Q9Y261 PharmGKB:PA201091 InParanoid:Q9Y261
            OMA:EHKRGGL OrthoDB:EOG4QRH5P PhylomeDB:Q9Y261 ChiTaRS:FOXA2
            GenomeRNAi:3170 NextBio:12568 ArrayExpress:Q9Y261 Bgee:Q9Y261
            CleanEx:HS_FOXA2 Genevestigator:Q9Y261 GermOnline:ENSG00000125798
            GO:GO:0001705 GO:GO:2000971 GO:GO:0033132 GO:GO:0021779
            GO:GO:2000543 GO:GO:0000432 GO:GO:2000976 Uniprot:Q9Y261
        Length = 457

 Score = 202 (76.2 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
 Identities = 47/127 (37%), Positives = 65/127 (51%)

Query:     5 SLEPMELKPPGQFSPMEP-CQTSSHKPEPSQ---SEVEDRCCPSHAKTHRKPPFTYTELI 60
             SL P+  +  G    + P    +S  P   Q   S   D      + TH KPP++Y  LI
Sbjct:   109 SLSPLGGQAAGAMGGLAPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKPPYSYISLI 168

Query:    61 EQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--G 116
               A+++     LT+S IYQWI + FP+Y QN  RW+NS+RH+LS N  F K  ++    G
Sbjct:   169 TMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPG 228

Query:   117 AGHLWNL 123
              G  W L
Sbjct:   229 KGSFWTL 235

 Score = 47 (21.6 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
 Identities = 19/90 (21%), Positives = 35/90 (38%)

Query:   166 TPAPSMETMPQPQPQPLNTMSLA-------HDPLQPFEVYSQESKTFPYEECKDVLYIQS 218
             TPA ++   P+P P P      A       H P  P E + +    + +     +  + S
Sbjct:   325 TPAAALSP-PEPAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLMS 383

Query:   219 NDNVLYTPHEDHKLYHND-----NVLYTPG 243
             ++   +  H  H+ +  D      V++ PG
Sbjct:   384 SEQQHHHSHHHHQPHKMDLKAYEQVMHYPG 413


>UNIPROTKB|Q9W707 [details] [associations]
            symbol:foxf1-b "Forkhead box protein F1-B" species:8355
            "Xenopus laevis" [GO:0003677 "DNA binding" evidence=ISS;NAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] [GO:0008283 "cell proliferation" evidence=IMP]
            [GO:0030509 "BMP signaling pathway" evidence=IMP] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0048566 "embryonic digestive tract development" evidence=IMP]
            [GO:0048745 "smooth muscle tissue development" evidence=IMP]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0045893 GO:GO:0030154 GO:GO:0003677
            GO:GO:0008283 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0030509 GO:GO:0048566
            GO:GO:0048745 HSSP:Q99958 KO:K09399 HOVERGEN:HBG051644
            EMBL:AJ242679 EMBL:BC108567 RefSeq:NP_001090140.1 UniGene:Xl.54939
            ProteinModelPortal:Q9W707 SMR:Q9W707 GeneID:735218 KEGG:xla:735218
            CTD:735218 Xenbase:XB-GENE-6254084 Uniprot:Q9W707
        Length = 372

 Score = 201 (75.8 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
 Identities = 49/130 (37%), Positives = 67/130 (51%)

Query:     4 ASLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTH------RKPPFTYT 57
             A ++    +PP Q SPM    T  H  +PS  E    C     KT+       KPP++Y 
Sbjct:     3 AEIQQPPSQPPAQSSPMSAA-TDKHGGQPSAMESAS-CATKTKKTNAGIRRPEKPPYSYI 60

Query:    58 ELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA-- 113
              LI  A++     +LT+S IYQ++  RFP++  +   WKNSVRHNLS+N  F K  K   
Sbjct:    61 ALIVMAIQSSPTKRLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLG 120

Query:   114 SQGAGHLWNL 123
               G GH W +
Sbjct:   121 RPGKGHYWTI 130

 Score = 43 (20.2 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query:   156 DDYSGQNSTETP-APSMETMPQPQPQPLNTMSLAHDPL 192
             D +S  +S  +  APS  T P  + QPL+  + A +PL
Sbjct:   258 DPHSVYSSPASAWAPSAST-PYIKQQPLSPCNTAANPL 294


>UNIPROTKB|Q91905 [details] [associations]
            symbol:foxi1-b "Forkhead box protein I1-B" species:8355
            "Xenopus laevis" [GO:0003677 "DNA binding" evidence=NAS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0007398 "ectoderm
            development" evidence=IMP] [GO:0043565 "sequence-specific DNA
            binding" evidence=ISS] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0048264
            "determination of ventral identity" evidence=IMP]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0045893 GO:GO:0007399 GO:GO:0030154
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0048264 GO:GO:0007398 HSSP:Q99958
            HOVERGEN:HBG067944 KO:K09401 EMBL:X74316 EMBL:BC078036 PIR:C56556
            PIR:S49009 RefSeq:NP_001081619.1 UniGene:Xl.34912
            ProteinModelPortal:Q91905 SMR:Q91905 GeneID:397955 KEGG:xla:397955
            CTD:397955 Xenbase:XB-GENE-6252155 Uniprot:Q91905
        Length = 367

 Score = 196 (74.1 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
 Identities = 49/155 (31%), Positives = 86/155 (55%)

Query:    51 KPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A++     +LT+S IYQ+++E FP+Y ++   W+NS+RHNLS+N  F+
Sbjct:   128 RPPYSYSALIAMAIQNASDKRLTLSQIYQYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 187

Query:   109 KGVKASQ--GAGHLWNL-SDMEPVEDASKSNWKKNRL-KTYLESLQPSEWGDDYSGQNST 164
             K  +     G G+ W L S+ E + D    N+++ R  K+   + + ++  +D+      
Sbjct:   188 KMPRDENDPGKGNYWTLDSNCEKMFD--NGNFRRKRKPKSESNNAKIAKRDEDHLNPKGK 245

Query:   165 ETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYS 199
             E+P P M T P   P+ L+    +  P  P   Y+
Sbjct:   246 ESP-P-MIT-PSSSPEVLSPTGHSKSPSPPTVTYT 277

 Score = 49 (22.3 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query:   227 HEDHKLYHNDNVLYT-PGEDHKLYQYEPSK 255
             H+D+ L++N +  YT   + H L Q  P +
Sbjct:   330 HQDNSLFYNRSPYYTNQKQPHFLQQLHPQQ 359


>UNIPROTKB|Q8AWH1 [details] [associations]
            symbol:foxa1 "Forkhead box protein A1" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0003690 "double-stranded DNA
            binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0010817
            "regulation of hormone levels" evidence=IBA] [GO:0019904 "protein
            domain specific binding" evidence=IBA] [GO:0042593 "glucose
            homeostasis" evidence=IBA] [GO:0045666 "positive regulation of
            neuron differentiation" evidence=IBA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0048665 "neuron fate specification" evidence=IBA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0060441
            "epithelial tube branching involved in lung morphogenesis"
            evidence=IBA] [GO:0060487 "lung epithelial cell differentiation"
            evidence=IBA] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0019904 GO:GO:0043565 GO:GO:0045944 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0042593 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0045666
            GO:GO:0008134 GO:GO:0007389 GO:GO:0060487 GO:GO:0048665
            GO:GO:0051090 GO:GO:0010817 GO:GO:0060441 eggNOG:COG5025
            HSSP:Q99958 InterPro:IPR018533 Pfam:PF09354 CTD:3169
            HOGENOM:HOG000231817 HOVERGEN:HBG006621 KO:K09387 OrthoDB:EOG466VMM
            EMBL:AY157637 RefSeq:NP_989419.1 UniGene:Str.1180
            ProteinModelPortal:Q8AWH1 SMR:Q8AWH1 STRING:Q8AWH1 GeneID:395059
            KEGG:xtr:395059 Xenbase:XB-GENE-487352 InParanoid:Q8AWH1
            Uniprot:Q8AWH1
        Length = 428

 Score = 210 (79.0 bits), Expect = 8.1e-15, P = 8.1e-15
 Identities = 72/295 (24%), Positives = 126/295 (42%)

Query:    17 FSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKE--KHQLTVSG 74
             +S M P  +       + +   D      +  H KPP++Y  LI  A+++     LT+S 
Sbjct:   124 YSGMNPGMSPMAYGPSNMNRTRDTKTFRRSYPHAKPPYSYISLITMAIQQAPSKMLTLSE 183

Query:    75 IYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNLS-DMEPVED 131
             IYQWI + F YY QN  RW+NS+RH+LS N  F K  ++    G G  W L  D   + +
Sbjct:   184 IYQWIMDLFLYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWTLHPDSGNMFE 243

Query:   132 ASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQPLNTMSLAHDP 191
                   ++ R K   E  Q  +   D  G+     P+  +  +     Q  ++ S+++  
Sbjct:   244 NGCYLRRQKRFKC--EKQQGGKGSQD--GRKDVSGPSSPLHRVHGKSSQMDSSSSMSNPS 299

Query:   192 LQPFEVYSQESKTFPYEECKDVLYIQSNDNVLYTPHEDHKLYHNDNVLYTPGEDHKLYQY 251
               P  +    S      E K  +    +    +  H  H L H  ++ +  G+ H  + +
Sbjct:   300 SSPQSLEHNGSNG----EMKPQVAAGPSPLSSHQNHSTHSLAHETHI-HLKGDPHYSFNH 354

Query:   252 EPSKNLIMAAYDGGQEKVEIFASDTISKNLIMAAYDGGQEKVEIFASDTISRKSI 306
               S N +M++ +  Q K++  A +   +    ++Y GG   + + +     R SI
Sbjct:   355 PFSINNLMSSSEQ-QHKLDFKAYEQALQQY--SSYSGGLPGMPLGSPSMAGRGSI 406


>UNIPROTKB|F1SAU0 [details] [associations]
            symbol:FOXA2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000976 "regulation of transcription from RNA
            polymerase II promoter involved in detection of glucose"
            evidence=IEA] [GO:2000971 "negative regulation of detection of
            glucose" evidence=IEA] [GO:2000543 "positive regulation of
            gastrulation" evidence=IEA] [GO:0090009 "primitive streak
            formation" evidence=IEA] [GO:0071542 "dopaminergic neuron
            differentiation" evidence=IEA] [GO:0061178 "regulation of insulin
            secretion involved in cellular response to glucose stimulus"
            evidence=IEA] [GO:0060487 "lung epithelial cell differentiation"
            evidence=IEA] [GO:0060441 "epithelial tube branching involved in
            lung morphogenesis" evidence=IEA] [GO:0048665 "neuron fate
            specification" evidence=IEA] [GO:0048468 "cell development"
            evidence=IEA] [GO:0045945 "positive regulation of transcription
            from RNA polymerase III promoter" evidence=IEA] [GO:0045666
            "positive regulation of neuron differentiation" evidence=IEA]
            [GO:0045665 "negative regulation of neuron differentiation"
            evidence=IEA] [GO:0043433 "negative regulation of sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0040019 "positive regulation of embryonic development"
            evidence=IEA] [GO:0033132 "negative regulation of glucokinase
            activity" evidence=IEA] [GO:0032525 "somite rostral/caudal axis
            specification" evidence=IEA] [GO:0031018 "endocrine pancreas
            development" evidence=IEA] [GO:0030193 "regulation of blood
            coagulation" evidence=IEA] [GO:0023019 "signal transduction
            involved in regulation of gene expression" evidence=IEA]
            [GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA]
            [GO:0021533 "cell differentiation in hindbrain" evidence=IEA]
            [GO:0010719 "negative regulation of epithelial to mesenchymal
            transition" evidence=IEA] [GO:0008344 "adult locomotory behavior"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0001705 "ectoderm
            formation" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0000978 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding"
            evidence=IEA] [GO:0000433 "negative regulation of transcription
            from RNA polymerase II promoter by glucose" evidence=IEA]
            [GO:0000432 "positive regulation of transcription from RNA
            polymerase II promoter by glucose" evidence=IEA] [GO:0019904
            "protein domain specific binding" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] InterPro:IPR001766
            InterPro:IPR013638 InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0071542 GO:GO:0001701
            GO:GO:0008344 GO:GO:0045665 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003705 GO:GO:0000978 GO:GO:0045666 GO:GO:0043433
            GO:GO:0040019 GO:GO:0031018 GO:GO:0045945 GO:GO:0030193
            GO:GO:0048468 GO:GO:0060487 GO:GO:0048665 GO:GO:0021904
            GO:GO:0060441 GO:GO:0010719 GO:GO:0023019 GO:GO:0090009
            GO:GO:0061178 GeneTree:ENSGT00700000104475 GO:GO:0000433
            GO:GO:0032525 GO:GO:0021533 InterPro:IPR018533 Pfam:PF09354
            OMA:EHKRGGL GO:GO:0001705 GO:GO:2000971 GO:GO:0033132 GO:GO:2000543
            GO:GO:0000432 GO:GO:2000976 EMBL:CU633667
            Ensembl:ENSSSCT00000007786 Uniprot:F1SAU0
        Length = 457

 Score = 202 (76.2 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
 Identities = 47/127 (37%), Positives = 65/127 (51%)

Query:     5 SLEPMELKPPGQFSPMEP-CQTSSHKPEPSQ---SEVEDRCCPSHAKTHRKPPFTYTELI 60
             SL P+  +  G    + P    +S  P   Q   S   D      + TH KPP++Y  LI
Sbjct:   109 SLSPLGGQAAGAMGGLAPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKPPYSYISLI 168

Query:    61 EQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--G 116
               A+++     LT+S IYQWI + FP+Y QN  RW+NS+RH+LS N  F K  ++    G
Sbjct:   169 TMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPG 228

Query:   117 AGHLWNL 123
              G  W L
Sbjct:   229 KGSFWTL 235

 Score = 46 (21.3 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
 Identities = 19/90 (21%), Positives = 35/90 (38%)

Query:   166 TPAPSMETMPQPQPQPLNTMSLA-------HDPLQPFEVYSQESKTFPYEECKDVLYIQS 218
             TPA ++   P+P P P      A       H P  P E + +    + +     +  + S
Sbjct:   325 TPATALSP-PEPAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLMS 383

Query:   219 NDNVLYTPHEDHKLYHND-----NVLYTPG 243
             ++   +  H  H+ +  D      V++ PG
Sbjct:   384 SEQQHHHGHHHHQPHKMDLKAYEQVMHYPG 413


>UNIPROTKB|P55318 [details] [associations]
            symbol:FOXA3 "Hepatocyte nuclear factor 3-gamma"
            species:9606 "Homo sapiens" [GO:0016568 "chromatin modification"
            evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0001678 "cellular glucose homeostasis" evidence=IBA;TAS]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007420 "brain
            development" evidence=IBA] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009267 "cellular response to starvation"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0019904 "protein domain specific binding" evidence=IBA]
            [GO:0021999 "neural plate anterior/posterior regionalization"
            evidence=IBA] [GO:0048665 "neuron fate specification" evidence=IBA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0060441
            "epithelial tube branching involved in lung morphogenesis"
            evidence=IRD] [GO:0060487 "lung epithelial cell differentiation"
            evidence=IRD] [GO:0070368 "positive regulation of hepatocyte
            differentiation" evidence=IBA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IMP] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA;TAS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0005634
            "nucleus" evidence=TAS] [GO:0031018 "endocrine pancreas
            development" evidence=TAS] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0019904 Reactome:REACT_111045 GO:GO:0008285 GO:GO:0007420
            GO:GO:0043565 Pathway_Interaction_DB:hnf3apathway GO:GO:0045944
            EMBL:CH471126 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0007283
            GO:GO:0016568 Pathway_Interaction_DB:hnf3bpathway GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0009790 GO:GO:0044212
            GO:GO:0003690 GO:GO:0009267 GO:GO:0008134 GO:GO:0031018
            GO:GO:0048665 GO:GO:0051090 GO:GO:0001678 GO:GO:0021999
            eggNOG:COG5025 InterPro:IPR018533 Pfam:PF09354 HOGENOM:HOG000231817
            HOVERGEN:HBG006621 Pathway_Interaction_DB:hnf3pathway CTD:3171
            KO:K08038 OMA:VYYQGVY OrthoDB:EOG43R3NB GO:GO:0070368 EMBL:L12141
            EMBL:AF176114 EMBL:AF176113 EMBL:BT006720 EMBL:AK223473
            EMBL:EU275778 EMBL:BC016024 IPI:IPI00024388 PIR:C48924
            RefSeq:NP_004488.2 UniGene:Hs.36137 PDB:1VTN PDBsum:1VTN
            ProteinModelPortal:P55318 SMR:P55318 IntAct:P55318 STRING:P55318
            PhosphoSite:P55318 DMDM:8247938 PaxDb:P55318 PRIDE:P55318
            DNASU:3171 Ensembl:ENST00000302177 GeneID:3171 KEGG:hsa:3171
            UCSC:uc002pdr.3 GeneCards:GC19P046368 HGNC:HGNC:5023 HPA:CAB015154
            MIM:602295 neXtProt:NX_P55318 PharmGKB:PA201092 InParanoid:P55318
            PhylomeDB:P55318 GenomeRNAi:3171 NextBio:12574 Bgee:P55318
            CleanEx:HS_FOXA3 Genevestigator:P55318 GermOnline:ENSG00000170608
            Uniprot:P55318
        Length = 350

 Score = 206 (77.6 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 58/171 (33%), Positives = 84/171 (49%)

Query:    49 HRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY +N  RW+NS+RH+LS N  
Sbjct:   115 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDC 174

Query:   107 FRKGVKASQ--GAGHLWNL--SDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQN 162
             F K  ++    G G  W L  S     E+      +K R K   E ++    G   + +N
Sbjct:   175 FVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQK-RFKLE-EKVKKGGSGAATTTRN 232

Query:   163 ------STETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPY 207
                   ST TPA ++ + PQP P      +   + +   +  S  S T PY
Sbjct:   233 GTGSAASTTTPAATVTSPPQPPPPAPEPEAQGGEDVGALDCGSPASST-PY 282


>UNIPROTKB|Q7T269 [details] [associations]
            symbol:FoxL2 "Forkhead transcription factor L2"
            species:9031 "Gallus gallus" [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0002074 "extraocular skeletal muscle development"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006309 "apoptotic DNA fragmentation"
            evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
            [GO:0019101 "female somatic sex determination" evidence=IEA]
            [GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0031624
            "ubiquitin conjugating enzyme binding" evidence=IEA] [GO:0042703
            "menstruation" evidence=IEA] [GO:0043028 "cysteine-type
            endopeptidase regulator activity involved in apoptotic process"
            evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0048048
            "embryonic eye morphogenesis" evidence=IEA] [GO:0060014 "granulosa
            cell differentiation" evidence=IEA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0045892 GO:GO:0006917 GO:GO:0043565 GO:GO:0045944
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0043280 GO:GO:0006309 GO:GO:0060014 HSSP:Q99958
            GeneTree:ENSGT00700000104135 GO:GO:0043028 EMBL:AADN02024206
            UniGene:Gga.7539 EMBL:AY155534 IPI:IPI00821727 STRING:Q7T269
            Ensembl:ENSGALT00000040961 HOGENOM:HOG000198402 HOVERGEN:HBG098671
            InParanoid:Q7T269 Uniprot:Q7T269
        Length = 110

 Score = 190 (71.9 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 41/97 (42%), Positives = 61/97 (62%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A++E  + +LT+SGIYQ+I  +FP+Y +N   W+NS+RHNLS+N  F 
Sbjct:     1 KPPYSYVALIAMAIRESAEKRLTLSGIYQYIISKFPFYEKNKKGWQNSIRHNLSLNECFI 60

Query:   109 KGVKASQGA--GHLWNLSDMEPV-EDA-SKSNWKKNR 141
             K  +   G   G+ W L   +P  ED   K N+++ R
Sbjct:    61 KVPREGGGERKGNYWTL---DPACEDMFEKGNYRRRR 94


>UNIPROTKB|F1MZB6 [details] [associations]
            symbol:FOXA2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:2000976 "regulation of transcription from RNA
            polymerase II promoter involved in detection of glucose"
            evidence=IEA] [GO:2000971 "negative regulation of detection of
            glucose" evidence=IEA] [GO:2000543 "positive regulation of
            gastrulation" evidence=IEA] [GO:0090009 "primitive streak
            formation" evidence=IEA] [GO:0071542 "dopaminergic neuron
            differentiation" evidence=IEA] [GO:0061178 "regulation of insulin
            secretion involved in cellular response to glucose stimulus"
            evidence=IEA] [GO:0060487 "lung epithelial cell differentiation"
            evidence=IEA] [GO:0060441 "epithelial tube branching involved in
            lung morphogenesis" evidence=IEA] [GO:0048665 "neuron fate
            specification" evidence=IEA] [GO:0048468 "cell development"
            evidence=IEA] [GO:0045945 "positive regulation of transcription
            from RNA polymerase III promoter" evidence=IEA] [GO:0045666
            "positive regulation of neuron differentiation" evidence=IEA]
            [GO:0045665 "negative regulation of neuron differentiation"
            evidence=IEA] [GO:0043433 "negative regulation of sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0040019 "positive regulation of embryonic development"
            evidence=IEA] [GO:0033132 "negative regulation of glucokinase
            activity" evidence=IEA] [GO:0032525 "somite rostral/caudal axis
            specification" evidence=IEA] [GO:0031018 "endocrine pancreas
            development" evidence=IEA] [GO:0030193 "regulation of blood
            coagulation" evidence=IEA] [GO:0023019 "signal transduction
            involved in regulation of gene expression" evidence=IEA]
            [GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA]
            [GO:0021533 "cell differentiation in hindbrain" evidence=IEA]
            [GO:0010719 "negative regulation of epithelial to mesenchymal
            transition" evidence=IEA] [GO:0008344 "adult locomotory behavior"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0001705 "ectoderm
            formation" evidence=IEA] [GO:0001701 "in utero embryonic
            development" evidence=IEA] [GO:0000978 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding"
            evidence=IEA] [GO:0000433 "negative regulation of transcription
            from RNA polymerase II promoter by glucose" evidence=IEA]
            [GO:0000432 "positive regulation of transcription from RNA
            polymerase II promoter by glucose" evidence=IEA] [GO:0019904
            "protein domain specific binding" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA] InterPro:IPR001766
            InterPro:IPR013638 InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0071542 GO:GO:0001701
            GO:GO:0008344 GO:GO:0045665 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003705 GO:GO:0000978 GO:GO:0045666 GO:GO:0043433
            GO:GO:0040019 GO:GO:0031018 GO:GO:0045945 GO:GO:0030193
            GO:GO:0048468 GO:GO:0060487 GO:GO:0048665 GO:GO:0021904
            GO:GO:0060441 GO:GO:0010719 GO:GO:0023019 GO:GO:0090009
            GO:GO:0061178 GeneTree:ENSGT00700000104475 GO:GO:0000433
            GO:GO:0032525 GO:GO:0021533 InterPro:IPR018533 Pfam:PF09354
            OMA:EHKRGGL GO:GO:0001705 GO:GO:2000971 GO:GO:0033132 GO:GO:2000543
            GO:GO:0000432 GO:GO:2000976 EMBL:DAAA02035840 IPI:IPI00688151
            Ensembl:ENSBTAT00000016463 ArrayExpress:F1MZB6 Uniprot:F1MZB6
        Length = 439

 Score = 202 (76.2 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 47/127 (37%), Positives = 65/127 (51%)

Query:     5 SLEPMELKPPGQFSPMEP-CQTSSHKPEPSQ---SEVEDRCCPSHAKTHRKPPFTYTELI 60
             SL P+  +  G    + P    +S  P   Q   S   D      + TH KPP++Y  LI
Sbjct:    87 SLSPLGGQAAGAMGGLAPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKPPYSYISLI 146

Query:    61 EQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--G 116
               A+++     LT+S IYQWI + FP+Y QN  RW+NS+RH+LS N  F K  ++    G
Sbjct:   147 TMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPG 206

Query:   117 AGHLWNL 123
              G  W L
Sbjct:   207 KGSFWTL 213

 Score = 44 (20.5 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 19/91 (20%), Positives = 35/91 (38%)

Query:   166 TPAPSMETMPQPQPQPLNTMSLA--------HDPLQPFEVYSQESKTFPYEECKDVLYIQ 217
             TPA ++   P+P P P      A        H P  P E + +    + +     +  + 
Sbjct:   306 TPASALSP-PEPAPSPGQQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLM 364

Query:   218 SNDNVLYTPHEDHKLYHND-----NVLYTPG 243
             S++   +  H  H+ +  D      V++ PG
Sbjct:   365 SSEQQHHHSHHHHQPHKMDLKAYEQVMHYPG 395


>UNIPROTKB|E1BTF1 [details] [associations]
            symbol:FOXL1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0007507 "heart development" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GeneTree:ENSGT00690000101636
            EMBL:AADN02064408 IPI:IPI00814490 Ensembl:ENSGALT00000039026
            Uniprot:E1BTF1
        Length = 278

 Score = 198 (74.8 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 44/109 (40%), Positives = 65/109 (59%)

Query:    43 PSHAKTHR----KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNS 96
             PS A T +    KPP++Y  LI  A+KE  + ++T+SGIYQ+I +RFP+Y+ N   W+NS
Sbjct:    28 PSSAITRQDPPQKPPYSYIALIAMAIKEAPEQKVTLSGIYQFIMDRFPFYHDNKQGWQNS 87

Query:    97 VRHNLSINPHFRK--GVKASQGAGHLWNLSDMEPVEDASKSNWKKNRLK 143
             +RHNLS+N  F K    K   G G  W L D   ++     N+++ + K
Sbjct:    88 IRHNLSLNDCFVKVPREKGRPGKGSYWTL-DPRCLDMFENGNYRRRKRK 135


>UNIPROTKB|Q2V894 [details] [associations]
            symbol:FoxJ2 "Forkhead transcription factor J2"
            species:7668 "Strongylocentrotus purpuratus" [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0019904 "protein
            domain specific binding" evidence=IBA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IBA]
            [GO:0048513 "organ development" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0019904 GO:GO:0045893
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0009790 GO:GO:0003690
            GO:GO:0008134 GO:GO:0007389 GO:GO:0051090 GO:GO:0048513
            eggNOG:COG5025 GO:GO:0009888 CTD:55810 KO:K09403 EMBL:DQ286737
            RefSeq:NP_001073017.1 UniGene:Spu.15552 ProteinModelPortal:Q2V894
            SMR:Q2V894 GeneID:587514 KEGG:spu:587514 Uniprot:Q2V894
        Length = 483

 Score = 208 (78.3 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
 Identities = 56/154 (36%), Positives = 80/154 (51%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQAL 64
             SL+P +   P + SP  P  TS+   E  Q  V+D           KPP++Y  LI  A+
Sbjct:    29 SLDPSKGTIPMRKSPSSPLDTSATWDE--QQPVKDG----------KPPYSYANLITFAI 76

Query:    65 KE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHL 120
                 K ++T+S IYQWI E FPYY +  + WKNS+RHNLS+N  F K  ++    G G  
Sbjct:    77 NSSPKKKMTLSEIYQWICENFPYYREAGNGWKNSIRHNLSLNKCFMKVPRSKDDPGKGSY 136

Query:   121 WNLSDMEPVEDASKSNWKKNRLKTYL--ESLQPS 152
             W + D  P +D+ +   +   +  Y   ESL+ S
Sbjct:   137 WAI-DNNPQDDSLRKKRRHPGMSPYSPEESLESS 169

 Score = 38 (18.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query:   166 TPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLY 215
             +P  S +++  P P     M + H+ L P  V      T P    + V++
Sbjct:   412 SPNSSHQSLGVPSP----VMGMGHNNLSPTMVPQPHQGTSPNAHMQRVVH 457


>UNIPROTKB|D2HNY8 [details] [associations]
            symbol:PANDA_013447 "Putative uncharacterized protein"
            species:9646 "Ailuropoda melanoleuca" [GO:0040019 "positive
            regulation of embryonic development" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0090009 "primitive streak formation" evidence=ISS] [GO:2000543
            "positive regulation of gastrulation" evidence=ISS]
            InterPro:IPR001766 InterPro:IPR013638 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0045893
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0040019 GO:GO:0090009 InterPro:IPR018533 Pfam:PF09354
            HOGENOM:HOG000231817 GO:GO:2000543 EMBL:GL193106 Uniprot:D2HNY8
        Length = 438

 Score = 202 (76.2 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
 Identities = 47/127 (37%), Positives = 65/127 (51%)

Query:     5 SLEPMELKPPGQFSPMEP-CQTSSHKPEPSQ---SEVEDRCCPSHAKTHRKPPFTYTELI 60
             SL P+  +  G    + P    +S  P   Q   S   D      + TH KPP++Y  LI
Sbjct:    88 SLSPLGGQAAGAMGGLTPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKPPYSYISLI 147

Query:    61 EQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--G 116
               A+++     LT+S IYQWI + FP+Y QN  RW+NS+RH+LS N  F K  ++    G
Sbjct:   148 TMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPG 207

Query:   117 AGHLWNL 123
              G  W L
Sbjct:   208 KGSFWTL 214

 Score = 43 (20.2 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
 Identities = 19/92 (20%), Positives = 34/92 (36%)

Query:   166 TPAPSMETMPQPQPQPLNTMSLA--------HDPLQPFEVYSQESKTFPYEECKDVLYIQ 217
             TPA ++   P+P P P      A        H P  P E + +    + +     +  + 
Sbjct:   304 TPAAALSP-PEPAPSPGQQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLM 362

Query:   218 SNDNVLYTPHEDHKLYHN------DNVLYTPG 243
             S++   +  H  H   H       + V++ PG
Sbjct:   363 SSEQQHHHSHHHHHQPHKMDLKAYEQVMHYPG 394


>RGD|2808 [details] [associations]
            symbol:Foxa2 "forkhead box A2" species:10116 "Rattus norvegicus"
          [GO:0000432 "positive regulation of transcription from RNA polymerase
          II promoter by glucose" evidence=IEA;ISO] [GO:0000433 "negative
          regulation of transcription from RNA polymerase II promoter by
          glucose" evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core
          promoter proximal region sequence-specific DNA binding"
          evidence=IEA;ISO;IDA] [GO:0001077 "RNA polymerase II core promoter
          proximal region sequence-specific DNA binding transcription factor
          activity involved in positive regulation of transcription"
          evidence=IDA] [GO:0001701 "in utero embryonic development"
          evidence=IEA;ISO;IBA] [GO:0001705 "ectoderm formation"
          evidence=IEA;ISO;IBA] [GO:0001708 "cell fate specification"
          evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003690
          "double-stranded DNA binding" evidence=IDA] [GO:0003700
          "sequence-specific DNA binding transcription factor activity"
          evidence=ISO;IDA;IMP] [GO:0003705 "RNA polymerase II distal enhancer
          sequence-specific DNA binding transcription factor activity"
          evidence=IEA;ISO;IBA] [GO:0005515 "protein binding" evidence=IPI]
          [GO:0005634 "nucleus" evidence=IEA;ISO;IDA] [GO:0005667
          "transcription factor complex" evidence=IBA] [GO:0005737 "cytoplasm"
          evidence=IEA] [GO:0006355 "regulation of transcription,
          DNA-dependent" evidence=ISO;IDA] [GO:0006357 "regulation of
          transcription from RNA polymerase II promoter" evidence=ISO]
          [GO:0007389 "pattern specification process" evidence=ISO] [GO:0007492
          "endoderm development" evidence=IBA] [GO:0007596 "blood coagulation"
          evidence=IBA] [GO:0008134 "transcription factor binding"
          evidence=IEA;IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
          [GO:0008344 "adult locomotory behavior" evidence=IEA;ISO] [GO:0009653
          "anatomical structure morphogenesis" evidence=ISO] [GO:0009952
          "anterior/posterior pattern specification" evidence=ISO;IBA]
          [GO:0009953 "dorsal/ventral pattern formation" evidence=ISO]
          [GO:0010468 "regulation of gene expression" evidence=ISO] [GO:0010719
          "negative regulation of epithelial to mesenchymal transition"
          evidence=IEA;ISO] [GO:0016568 "chromatin modification" evidence=IEA]
          [GO:0019900 "kinase binding" evidence=IPI] [GO:0019904 "protein
          domain specific binding" evidence=IEA;IBA] [GO:0021533 "cell
          differentiation in hindbrain" evidence=IEA;ISO;IBA] [GO:0021779
          "oligodendrocyte cell fate commitment" evidence=IBA] [GO:0021904
          "dorsal/ventral neural tube patterning" evidence=IEA;ISO;IBA]
          [GO:0023019 "signal transduction involved in regulation of gene
          expression" evidence=IEA;ISO] [GO:0030193 "regulation of blood
          coagulation" evidence=IEA;ISO] [GO:0030324 "lung development"
          evidence=ISO] [GO:0031018 "endocrine pancreas development"
          evidence=IEA;ISO;IBA] [GO:0032289 "central nervous system myelin
          formation" evidence=IBA] [GO:0032525 "somite rostral/caudal axis
          specification" evidence=IEA;ISO] [GO:0032868 "response to insulin
          stimulus" evidence=IEP] [GO:0033132 "negative regulation of
          glucokinase activity" evidence=IEA;ISO] [GO:0040019 "positive
          regulation of embryonic development" evidence=IEA;ISO;ISS]
          [GO:0043433 "negative regulation of sequence-specific DNA binding
          transcription factor activity" evidence=IEA;ISO] [GO:0043565
          "sequence-specific DNA binding" evidence=ISO;IDA] [GO:0044212
          "transcription regulatory region DNA binding" evidence=ISO]
          [GO:0044464 "cell part" evidence=ISO] [GO:0045665 "negative
          regulation of neuron differentiation" evidence=IEA;ISO;IBA]
          [GO:0045666 "positive regulation of neuron differentiation"
          evidence=IEA;ISO;IBA] [GO:0045893 "positive regulation of
          transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944 "positive
          regulation of transcription from RNA polymerase II promoter"
          evidence=ISO;IMP;IDA] [GO:0045945 "positive regulation of
          transcription from RNA polymerase III promoter" evidence=IEA;ISO]
          [GO:0046332 "SMAD binding" evidence=IDA] [GO:0048468 "cell
          development" evidence=IEA;ISO] [GO:0048646 "anatomical structure
          formation involved in morphogenesis" evidence=ISO] [GO:0048665
          "neuron fate specification" evidence=IEA;ISO;IBA] [GO:0051090
          "regulation of sequence-specific DNA binding transcription factor
          activity" evidence=IBA] [GO:0060441 "epithelial tube branching
          involved in lung morphogenesis" evidence=IEA;ISO;IBA] [GO:0060487
          "lung epithelial cell differentiation" evidence=IEA;ISO;IBA]
          [GO:0061178 "regulation of insulin secretion involved in cellular
          response to glucose stimulus" evidence=IEA;ISO] [GO:0071542
          "dopaminergic neuron differentiation" evidence=IEA;ISO] [GO:0090009
          "primitive streak formation" evidence=IEA;ISO;ISS] [GO:2000543
          "positive regulation of gastrulation" evidence=IEA;ISO;ISS]
          [GO:2000971 "negative regulation of detection of glucose"
          evidence=IEA;ISO] [GO:2000976 "regulation of transcription from RNA
          polymerase II promoter involved in detection of glucose"
          evidence=IEA;ISO] InterPro:IPR001766 InterPro:IPR013638
          InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
          PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
          RGD:2808 GO:GO:0005737 GO:GO:0019904 GO:GO:0007596 GO:GO:0071542
          GO:GO:0001701 GO:GO:0008344 GO:GO:0045665 Gene3D:1.10.10.10
          InterPro:IPR011991 GO:GO:0016568 GO:GO:0032868 GO:GO:0005667
          GO:GO:0003705 GO:GO:0000978 GO:GO:0001077 GO:GO:0008301 GO:GO:0003690
          GO:GO:0046332 GO:GO:0045666 GO:GO:0043433 GO:GO:0040019 GO:GO:0008134
          GO:GO:0031018 GO:GO:0045945 GO:GO:0007492 GO:GO:0030193 GO:GO:0060487
          GO:GO:0048665 GO:GO:0051090 GO:GO:0021904 GO:GO:0060441 GO:GO:0010719
          GO:GO:0023019 GO:GO:0090009 GO:GO:0061178 eggNOG:COG5025
          GO:GO:0000433 GO:GO:0032525 GO:GO:0032289 GO:GO:0021533 KO:K08035
          InterPro:IPR018533 Pfam:PF09354 HOGENOM:HOG000231817
          HOVERGEN:HBG006621 CTD:3170 OrthoDB:EOG4QRH5P GO:GO:0001705
          GO:GO:2000971 GO:GO:0033132 GO:GO:0021779 GO:GO:2000543 GO:GO:0000432
          GO:GO:2000976 EMBL:L09647 IPI:IPI00362515 PIR:B39533
          RefSeq:NP_036875.1 UniGene:Rn.10948 ProteinModelPortal:P32182
          SMR:P32182 IntAct:P32182 STRING:P32182 PhosphoSite:P32182
          GeneID:25099 KEGG:rno:25099 InParanoid:P32182 NextBio:605409
          Genevestigator:P32182 GermOnline:ENSRNOG00000013133 Uniprot:P32182
        Length = 458

 Score = 199 (75.1 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 48/127 (37%), Positives = 65/127 (51%)

Query:     5 SLEPMELKPPGQFSPMEP-CQTSSHKPEPSQ---SEVEDRCCPSHAKTHRKPPFTYTELI 60
             SL P+  +  G    + P    +S  P   Q   S   D      + TH KPP++Y  LI
Sbjct:   109 SLSPLGGQAAGAMGGLAPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKPPYSYISLI 168

Query:    61 EQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--G 116
               A+++     LT+S IYQWI + FP+Y QN  RW+NS+RH+LS N  F K  +A    G
Sbjct:   169 TMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFND-FLKVPRAPDKPG 227

Query:   117 AGHLWNL 123
              G  W L
Sbjct:   228 KGSFWTL 234

 Score = 47 (21.6 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 19/90 (21%), Positives = 35/90 (38%)

Query:   166 TPAPSMETMPQPQPQPLNTMSLA-------HDPLQPFEVYSQESKTFPYEECKDVLYIQS 218
             TPA ++   P+P P P      A       H P  P E + +    + +     +  + S
Sbjct:   325 TPASALSP-PEPAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLMS 383

Query:   219 NDNVLYTPHEDHKLYHND-----NVLYTPG 243
             ++   +  H  H+ +  D      V++ PG
Sbjct:   384 SEQQHHHSHHHHQPHKMDLKTYEQVMHYPG 413


>UNIPROTKB|Q2V889 [details] [associations]
            symbol:FoxJ1 "Forkhead transcription factor J1"
            species:7668 "Strongylocentrotus purpuratus" [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007368
            "determination of left/right symmetry" evidence=IBA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0009790 "embryo development"
            evidence=IBA] [GO:0009888 "tissue development" evidence=IBA]
            [GO:0019904 "protein domain specific binding" evidence=IBA]
            [GO:0030036 "actin cytoskeleton organization" evidence=IBA]
            [GO:0032862 "activation of Rho GTPase activity" evidence=IBA]
            [GO:0035089 "establishment of apical/basal cell polarity"
            evidence=IBA] [GO:0048513 "organ development" evidence=IBA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0060972
            "left/right pattern formation" evidence=IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0019904
            GO:GO:0030036 GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0009790
            GO:GO:0003690 GO:GO:0007368 GO:GO:0008134 GO:GO:0051090
            GO:GO:0048513 GO:GO:0032862 eggNOG:COG5025 GO:GO:0009888
            GO:GO:0060972 CTD:2302 KO:K09402 GO:GO:0035089 EMBL:DQ286742
            RefSeq:NP_001073013.1 UniGene:Spu.10715 ProteinModelPortal:Q2V889
            SMR:Q2V889 GeneID:581613 KEGG:spu:581613 Uniprot:Q2V889
        Length = 468

 Score = 208 (78.3 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 49/134 (36%), Positives = 74/134 (55%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y+ LI  A+KE  KH++T+S IY+WI+E F YY   D  W+NS+RHNLS+N  F+
Sbjct:   149 KPPYSYSTLIWMAMKESKKHKITLSSIYKWITENFKYYQVADPSWQNSIRHNLSLNKCFQ 208

Query:   109 K--GVKASQGAGHLWNLSDMEPVEDASKSNWKKNRLKTYLE---SLQPSEWGDDYSGQNS 163
             K    K   G G  W + D    ++     +KK R  ++ E    ++     +D  G   
Sbjct:   209 KVPRKKDEPGKGGFWRI-DPAHADELENGVFKKRRHASFRELPIKIKTEPESED-EGHYM 266

Query:   164 TETPAPSM-ETMPQ 176
              +T   S  +TMP+
Sbjct:   267 DDTKHHSRKQTMPK 280


>UNIPROTKB|Q75EM9 [details] [associations]
            symbol:AAR050C "AAR050Cp" species:284811 "Ashbya gossypii
            ATCC 10895" [GO:0000790 "nuclear chromatin" evidence=IBA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0043565 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0000790
            GO:GO:0003690 GO:GO:0008134 GO:GO:0051090 EMBL:AE016814
            GenomeReviews:AE016814_GR HSSP:Q01167 KO:K09413 OrthoDB:EOG4XKZH6
            RefSeq:NP_982591.1 ProteinModelPortal:Q75EM9 SMR:Q75EM9
            EnsemblFungi:AAS50415 GeneID:4618705 KEGG:ago:AGOS_AAR050C
            PhylomeDB:Q75EM9 Uniprot:Q75EM9
        Length = 453

 Score = 207 (77.9 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 41/101 (40%), Positives = 60/101 (59%)

Query:    25 TSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKHQ--LTVSGIYQWISER 82
             + +H  +   +++E  C      + RKPP++Y  LI  A+ +  +  LT+S IY+WIS  
Sbjct:    57 SGTHTVDELAAQLERGC---EQASERKPPYSYAVLIGVAILQSQEGKLTLSQIYRWISSF 113

Query:    83 FPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNL 123
             FPYY   D  W+NS+RHNLS+N  F KG K+  G GH W +
Sbjct:   114 FPYYRLCDAGWQNSIRHNLSLNEAFVKGGKSLDGKGHFWEI 154


>ZFIN|ZDB-GENE-031126-4 [details] [associations]
            symbol:foxi3b "forkhead box I3b" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0043049 "otic
            placode formation" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0009957 "epidermal cell fate specification"
            evidence=IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 ZFIN:ZDB-GENE-031126-4 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0008134 GO:GO:0007389
            GO:GO:0051090 GO:GO:0043049 GO:GO:0009957 HSSP:Q99958
            HOVERGEN:HBG067944 KO:K09401 EMBL:AY331584 IPI:IPI00500300
            RefSeq:NP_944600.1 UniGene:Dr.89473 ProteinModelPortal:Q7T1C0
            SMR:Q7T1C0 GeneID:387258 KEGG:dre:387258 CTD:387258
            InParanoid:Q7T1C0 NextBio:20814129 Uniprot:Q7T1C0
        Length = 383

 Score = 205 (77.2 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 47/142 (33%), Positives = 79/142 (55%)

Query:    51 KPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A+    + +LT+S IYQ++++ FP+YN++   W+NS+RHNLS+N  F+
Sbjct:   130 RPPYSYSALIAMAIHGAPERRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 189

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPS---EWGDDYSGQN 162
             K  +     G G+ W L  + E + D      K+ R    L     S   E GD  +G+ 
Sbjct:   190 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDSLPEKSSSGGNESGDS-NGRG 248

Query:   163 STETPAPSMETMPQPQPQPLNT 184
             S ++ +  + T P+  P P +T
Sbjct:   249 SPKSQSIDISTSPEKGPSPAST 270


>MGI|MGI:1347476 [details] [associations]
            symbol:Foxa2 "forkhead box A2" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0000432 "positive
            regulation of transcription from RNA polymerase II promoter by
            glucose" evidence=IDA] [GO:0000433 "negative regulation of
            transcription from RNA polymerase II promoter by glucose"
            evidence=IDA] [GO:0000978 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding" evidence=ISO] [GO:0001077
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding transcription factor activity involved in positive
            regulation of transcription" evidence=ISO] [GO:0001701 "in utero
            embryonic development" evidence=IMP] [GO:0001705 "ectoderm
            formation" evidence=IGI] [GO:0001708 "cell fate specification"
            evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO;IDA]
            [GO:0003690 "double-stranded DNA binding" evidence=ISO;IBA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISO;IDA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription
            factor complex" evidence=IBA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISO;IDA] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0007389 "pattern
            specification process" evidence=IGI] [GO:0007492 "endoderm
            development" evidence=IBA] [GO:0007596 "blood coagulation"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0008344 "adult locomotory behavior" evidence=IMP] [GO:0009653
            "anatomical structure morphogenesis" evidence=IGI] [GO:0009952
            "anterior/posterior pattern specification" evidence=IGI]
            [GO:0009953 "dorsal/ventral pattern formation" evidence=IGI]
            [GO:0010468 "regulation of gene expression" evidence=IGI]
            [GO:0010719 "negative regulation of epithelial to mesenchymal
            transition" evidence=ISO] [GO:0016568 "chromatin modification"
            evidence=IEA] [GO:0019900 "kinase binding" evidence=ISO]
            [GO:0019904 "protein domain specific binding" evidence=IBA]
            [GO:0021533 "cell differentiation in hindbrain" evidence=IGI;IMP]
            [GO:0021779 "oligodendrocyte cell fate commitment" evidence=IBA]
            [GO:0021904 "dorsal/ventral neural tube patterning"
            evidence=IGI;IDA] [GO:0023019 "signal transduction involved in
            regulation of gene expression" evidence=IDA] [GO:0030193
            "regulation of blood coagulation" evidence=ISO] [GO:0030324 "lung
            development" evidence=IGI] [GO:0031018 "endocrine pancreas
            development" evidence=ISO;IMP] [GO:0032289 "central nervous system
            myelin formation" evidence=IBA] [GO:0032525 "somite rostral/caudal
            axis specification" evidence=IMP] [GO:0033132 "negative regulation
            of glucokinase activity" evidence=IDA] [GO:0040019 "positive
            regulation of embryonic development" evidence=IMP] [GO:0043433
            "negative regulation of sequence-specific DNA binding transcription
            factor activity" evidence=ISO] [GO:0043565 "sequence-specific DNA
            binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
            region DNA binding" evidence=ISO] [GO:0044464 "cell part"
            evidence=IDA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IGI] [GO:0045666 "positive regulation of
            neuron differentiation" evidence=IGI;IMP] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO;IMP]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;IGI;IDA;IMP] [GO:0045945
            "positive regulation of transcription from RNA polymerase III
            promoter" evidence=IMP] [GO:0046332 "SMAD binding" evidence=ISO]
            [GO:0048468 "cell development" evidence=IMP] [GO:0048646
            "anatomical structure formation involved in morphogenesis"
            evidence=IGI] [GO:0048665 "neuron fate specification"
            evidence=IGI;IMP] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0060441
            "epithelial tube branching involved in lung morphogenesis"
            evidence=IGI] [GO:0060487 "lung epithelial cell differentiation"
            evidence=IGI] [GO:0061178 "regulation of insulin secretion involved
            in cellular response to glucose stimulus" evidence=IDA] [GO:0070741
            "response to interleukin-6" evidence=TAS] [GO:0071542 "dopaminergic
            neuron differentiation" evidence=IMP] [GO:0090009 "primitive streak
            formation" evidence=IMP] [GO:2000543 "positive regulation of
            gastrulation" evidence=IMP] [GO:2000971 "negative regulation of
            detection of glucose" evidence=IDA] [GO:2000976 "regulation of
            transcription from RNA polymerase II promoter involved in detection
            of glucose" evidence=IDA] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            MGI:MGI:1347476 GO:GO:0005737 GO:GO:0019904 GO:GO:0007596
            GO:GO:0071542 GO:GO:0043565 GO:GO:0001701 GO:GO:0008344
            GO:GO:0045665 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016568
            GO:GO:0032868 GO:GO:0005667 GO:GO:0003705 GO:GO:0000978
            GO:GO:0008301 GO:GO:0003690 GO:GO:0045666 GO:GO:0043433
            GO:GO:0040019 GO:GO:0008134 GO:GO:0031018 GO:GO:0070741
            GO:GO:0045945 GO:GO:0007492 GO:GO:0030193 GO:GO:0060487
            GO:GO:0048665 GO:GO:0051090 GO:GO:0021904 GO:GO:0060441
            GO:GO:0010719 GO:GO:0023019 GO:GO:0090009 GO:GO:0061178
            eggNOG:COG5025 GeneTree:ENSGT00700000104475 GO:GO:0000433
            GO:GO:0032525 GO:GO:0032289 GO:GO:0021533 KO:K08035
            InterPro:IPR018533 Pfam:PF09354 HOGENOM:HOG000231817
            HOVERGEN:HBG006621 CTD:3170 OrthoDB:EOG4QRH5P GO:GO:0001705
            GO:GO:2000971 GO:GO:0033132 GO:GO:0021779 GO:GO:2000543
            GO:GO:0000432 GO:GO:2000976 EMBL:X74937 EMBL:L10409 EMBL:AL845297
            EMBL:U04197 IPI:IPI00119671 PIR:B54258 RefSeq:NP_034576.2
            UniGene:Mm.938 ProteinModelPortal:P35583 SMR:P35583 IntAct:P35583
            STRING:P35583 PhosphoSite:P35583 PRIDE:P35583 DNASU:15376
            Ensembl:ENSMUST00000047315 GeneID:15376 KEGG:mmu:15376
            InParanoid:A2AR89 NextBio:288030 Bgee:P35583 CleanEx:MM_FOXA2
            Genevestigator:P35583 GermOnline:ENSMUSG00000037025 Uniprot:P35583
        Length = 459

 Score = 202 (76.2 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 47/127 (37%), Positives = 65/127 (51%)

Query:     5 SLEPMELKPPGQFSPMEP-CQTSSHKPEPSQ---SEVEDRCCPSHAKTHRKPPFTYTELI 60
             SL P+  +  G    + P    +S  P   Q   S   D      + TH KPP++Y  LI
Sbjct:   109 SLSPLGGQAAGAMGGLAPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKPPYSYISLI 168

Query:    61 EQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--G 116
               A+++     LT+S IYQWI + FP+Y QN  RW+NS+RH+LS N  F K  ++    G
Sbjct:   169 TMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPG 228

Query:   117 AGHLWNL 123
              G  W L
Sbjct:   229 KGSFWTL 235

 Score = 42 (19.8 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 18/89 (20%), Positives = 34/89 (38%)

Query:   167 PAPSMETMPQPQPQPLNTMSLA-------HDPLQPFEVYSQESKTFPYEECKDVLYIQSN 219
             PA ++   P+P P P      A       H P  P E + +    + +     +  + S+
Sbjct:   327 PASALSP-PEPAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLMSS 385

Query:   220 DNVLYTPHEDHKLYHND-----NVLYTPG 243
             +   +  H  H+ +  D      V++ PG
Sbjct:   386 EQQHHHSHHHHQPHKMDLKAYEQVMHYPG 414


>ZFIN|ZDB-GENE-060512-241 [details] [associations]
            symbol:foxl2 "forkhead box L2" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0006309 "apoptotic DNA fragmentation"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0043028 "cysteine-type endopeptidase regulator
            activity involved in apoptotic process" evidence=IBA] [GO:0031624
            "ubiquitin conjugating enzyme binding" evidence=IBA] [GO:0002074
            "extraocular skeletal muscle development" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0001541 "ovarian
            follicle development" evidence=IBA] [GO:0019101 "female somatic sex
            determination" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IBA] [GO:0048048
            "embryonic eye morphogenesis" evidence=IBA] [GO:0030331 "estrogen
            receptor binding" evidence=IBA] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0006917 "induction of apoptosis" evidence=IBA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-060512-241 GO:GO:0006917 GO:GO:0043565 GO:GO:0045944
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0043280 GO:GO:0001541
            GO:GO:0006309 GO:GO:0008134 GO:GO:0048048 GO:GO:0007389
            GO:GO:0030331 GO:GO:0051090 GO:GO:0002074 eggNOG:COG5025
            GO:GO:0019101 GeneTree:ENSGT00700000104135 KO:K09405 CTD:668
            HOGENOM:HOG000218632 HOVERGEN:HBG051651 OMA:QPAELSM GO:GO:0043028
            GO:GO:0031624 EMBL:CU571391 EMBL:BC116585 IPI:IPI00508402
            RefSeq:NP_001038717.1 UniGene:Dr.90409 SMR:Q1JPV2 STRING:Q1JPV2
            Ensembl:ENSDART00000061828 GeneID:692279 KEGG:dre:692279
            InParanoid:Q1JPV2 OrthoDB:EOG4TF0KX NextBio:20902483 Uniprot:Q1JPV2
        Length = 306

 Score = 200 (75.5 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 45/123 (36%), Positives = 71/123 (57%)

Query:    25 TSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKHQ--LTVSGIYQWISER 82
             +SS + + ++ E      P  +   +KPP++Y  LI  A++E  +  LT+SGIYQ+I  +
Sbjct:    20 SSSAEKDRTKDEAPPEKGPDKSDPTQKPPYSYVALIAMAIRESSEKRLTLSGIYQYIISK 79

Query:    83 FPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA--GHLWNLSDMEPV-EDA-SKSNWK 138
             FP+Y +N   W+NS+RHNLS+N  F K  +   G   G+ W L   +P  ED   K N++
Sbjct:    80 FPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTL---DPACEDMFEKGNYR 136

Query:   139 KNR 141
             + R
Sbjct:   137 RRR 139


>UNIPROTKB|G3V7T9 [details] [associations]
            symbol:Foxa3 "Forkhead box A3, isoform CRA_b" species:10116
            "Rattus norvegicus" [GO:0001678 "cellular glucose homeostasis"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
            [GO:0008134 "transcription factor binding" evidence=IEA]
            [GO:0009267 "cellular response to starvation" evidence=IEA]
            [GO:0019904 "protein domain specific binding" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001766
            InterPro:IPR013638 InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 RGD:2809 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CH473979
            GeneTree:ENSGT00700000104475 InterPro:IPR018533 Pfam:PF09354
            OMA:VYYQGVY UniGene:Rn.10949 Ensembl:ENSRNOT00000019219
            Uniprot:G3V7T9
        Length = 354

 Score = 203 (76.5 bits), Expect = 2.9e-14, P = 2.9e-14
 Identities = 50/144 (34%), Positives = 75/144 (52%)

Query:    49 HRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY +N  RW+NS+RH+LS N  
Sbjct:   117 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDC 176

Query:   107 FRKGVKASQ--GAGHLWNL--SDMEPVEDAS----KSNWK-KNRLKTYLESLQPSEWGDD 157
             F K  ++    G G  W L  S     E+      +  +K + + K    +   +  G  
Sbjct:   177 FVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFKLEEKAKKGNSATSATRNGTV 236

Query:   158 YSGQNSTETPAPSMETMPQPQPQP 181
              S  ++T T A ++ +  QPQP P
Sbjct:   237 GSATSATTTAATAVTSPAQPQPTP 260


>ZFIN|ZDB-GENE-980526-423 [details] [associations]
            symbol:foxa3 "forkhead box A3" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA;IBA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA;IBA] [GO:0048319 "axial mesoderm
            morphogenesis" evidence=IGI;IMP] [GO:0033504 "floor plate
            development" evidence=IMP] [GO:0048785 "hatching gland development"
            evidence=IMP] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0001678 "cellular glucose homeostasis" evidence=IBA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0060441
            "epithelial tube branching involved in lung morphogenesis"
            evidence=IRD] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0008301
            "DNA binding, bending" evidence=IBA] [GO:0070368 "positive
            regulation of hepatocyte differentiation" evidence=IBA] [GO:0008285
            "negative regulation of cell proliferation" evidence=IBA]
            [GO:0060487 "lung epithelial cell differentiation" evidence=IRD]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0048665 "neuron fate
            specification" evidence=IBA] [GO:0009267 "cellular response to
            starvation" evidence=IBA] [GO:0007420 "brain development"
            evidence=IGI] [GO:0021999 "neural plate anterior/posterior
            regionalization" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001766
            InterPro:IPR013638 InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 ZFIN:ZDB-GENE-980526-423 GO:GO:0019904 GO:GO:0008285
            GO:GO:0007420 GO:GO:0043565 GO:GO:0045944 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0003690 GO:GO:0009267 GO:GO:0008134 GO:GO:0048665
            GO:GO:0051090 GO:GO:0001678 GO:GO:0021999 GO:GO:0033504
            GeneTree:ENSGT00700000104475 GO:GO:0048319 InterPro:IPR018533
            Pfam:PF09354 HOVERGEN:HBG006621 GO:GO:0070368 EMBL:BX908751
            GO:GO:0048785 EMBL:BC162391 IPI:IPI00505867 UniGene:Dr.1307
            SMR:Q1LV18 STRING:Q1LV18 Ensembl:ENSDART00000010813
            InParanoid:Q1LV18 OMA:NLMSNEQ Uniprot:Q1LV18
        Length = 441

 Score = 198 (74.8 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
 Identities = 43/119 (36%), Positives = 64/119 (53%)

Query:    11 LKPPGQFSPM-EPCQTSSHKPEPSQSEVEDRCCP-SHAKTHRKPPFTYTELIEQALKEKH 68
             L P   +  M +P    S+    S +  ++   P   + TH KPP++Y  LI  A+++  
Sbjct:   101 LGPLSHYQSMGQPMSQISYPSPTSLNRTKEMPKPYRRSLTHAKPPYSYISLITMAIQQSQ 160

Query:    69 Q--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL 123
                LT++ IYQWI + FPYY +N  RW+NS+RH+LS N  F K  ++    G G  W L
Sbjct:   161 SKMLTLNEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWAL 219

 Score = 45 (20.9 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
 Identities = 17/102 (16%), Positives = 40/102 (39%)

Query:   162 NSTETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLYIQSNDN 221
             +S+   +  M   P     P++ + L +DPL+  + +      F +     +  + SN+ 
Sbjct:   333 SSSHLHSQGMGNSPHLLGSPMHHLDLQNDPLKSMDPH------FNFNHPFSITNLMSNEQ 386

Query:   222 VL-YTPHEDHKLYHNDNVLYTPGEDHKLYQYEPSKNLIMAAY 262
              +    ++D  + +N     +P    ++Y       +   AY
Sbjct:   387 KMDLKSYQDQVMAYNSYATSSPVAAKQIYDNAGPSAIDSGAY 428


>UNIPROTKB|Q9DGG2 [details] [associations]
            symbol:FOXK1 "Winged helix protein CWH-5" species:9031
            "Gallus gallus" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0006357 "regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0030308
            "negative regulation of cell growth" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0045892 GO:GO:0045893 GO:GO:0005730
            GO:GO:0030308 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006357 GO:GO:0006351 eggNOG:COG5025
            HSSP:Q01167 GeneTree:ENSGT00700000104094 HOGENOM:HOG000072588
            EMBL:AADN02023808 OrthoDB:EOG4QRH3W HOVERGEN:HBG098671 EMBL:U37276
            IPI:IPI00818763 UniGene:Gga.11863 UniGene:Gga.51502
            Ensembl:ENSGALT00000040858 InParanoid:Q9DGG2 Uniprot:Q9DGG2
        Length = 108

 Score = 186 (70.5 bits), Expect = 3.4e-14, P = 3.4e-14
 Identities = 39/93 (41%), Positives = 57/93 (61%)

Query:    47 KTHRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K   KPP++Y +LI QA+      QLT+SGIY  I++ +PYY   D  W+NS+RHNLS+N
Sbjct:     6 KDESKPPYSYAQLIVQAISSAPDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLN 65

Query:   105 PHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
              +F K  ++ +  G G  W +   S+ + VE A
Sbjct:    66 RYFIKVPRSQEEPGKGSFWRIDPASEAKLVEQA 98


>UNIPROTKB|Q68EZ2 [details] [associations]
            symbol:foxj2 "Forkhead box protein J2" species:8355
            "Xenopus laevis" [GO:0043565 "sequence-specific DNA binding"
            evidence=ISS] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0005634 GO:GO:0045893
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 HSSP:Q99958 CTD:55810 HOVERGEN:HBG051648 KO:K09403
            EMBL:BC080056 RefSeq:NP_001087521.1 UniGene:Xl.48692
            ProteinModelPortal:Q68EZ2 SMR:Q68EZ2 GeneID:447345 KEGG:xla:447345
            Xenbase:XB-GENE-865002 Uniprot:Q68EZ2
        Length = 512

 Score = 206 (77.6 bits), Expect = 3.9e-14, P = 3.9e-14
 Identities = 66/223 (29%), Positives = 98/223 (43%)

Query:    46 AKTHR--KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNL 101
             A  HR  KPP++Y  LI+ A+      ++T+S IY+WI + FPYY      WKNS+RHNL
Sbjct:    52 AAAHRDGKPPYSYANLIQYAINSAPAKRMTLSEIYRWICDNFPYYRSAGVGWKNSIRHNL 111

Query:   102 SINPHFRKGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYL--ESLQPSEWGDD 157
             S+N  FRK  +     G G  W + D  P ED +    K+      +  +S +       
Sbjct:   112 SLNKCFRKVPRPRDDPGKGSYWMI-DSCPKEDITLPRRKRPHPDDEVSQDSFEQEVNKSP 170

Query:   158 YSGQNSTETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLYIQ 217
              S  +    P  + +  P     PL T S A+    P +     + T+   +C    + +
Sbjct:   171 LSSASEVSMPQEATQGHPMNNNSPLPTYSQANPTQMPPD---SRAPTYNNNDCYKFSFSE 227

Query:   218 SNDNVLYTPHEDHKLYHNDNVLYTPGE--DHKLYQYEPSKNLI 258
             S    L        LYH+  +L   GE  D  LY    SK ++
Sbjct:   228 STFPDLSCSFRS--LYHS--LLGKQGERGDKDLYNSMQSKQVL 266


>UNIPROTKB|Q2V896 [details] [associations]
            symbol:FoxQ2 "Forkhead transcription factor Q2"
            species:7668 "Strongylocentrotus purpuratus" [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0043565 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0009790 GO:GO:0003690 GO:GO:0008134 GO:GO:0007389
            GO:GO:0051090 GO:GO:0009888 EMBL:DQ286735 RefSeq:NP_001073018.1
            UniGene:Spu.10103 ProteinModelPortal:Q2V896 GeneID:588775
            KEGG:spu:588775 CTD:565796 Uniprot:Q2V896
        Length = 329

 Score = 200 (75.5 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 41/128 (32%), Positives = 71/128 (55%)

Query:    30 PEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQAL---KEKHQLTVSGIYQWISERFPYY 86
             P  + S      C S   T +KPP +Y  LI  A+   ++KH L +  IY++I +RFP++
Sbjct:    55 PSDNASSGASSICDSPPST-KKPPHSYIALIAMAIINSQDKH-LLLCDIYEYIMKRFPFF 112

Query:    87 NQNDDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLSDMEPVEDASKSNWKKNRLKTYL 146
               N+  W+NS+RHNLS+N  F K  ++  G GH W +     +ED ++ ++++ + +   
Sbjct:   113 KDNERSWRNSIRHNLSLNECFIKAGRSGDGRGHFWAIHPAN-LEDFARGDYRRRQARRRA 171

Query:   147 ESLQPSEW 154
              S+  S +
Sbjct:   172 RSVSYSPY 179


>CGD|CAL0005400 [details] [associations]
            symbol:HCM1 species:5476 "Candida albicans" [GO:0000790
            "nuclear chromatin" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0051300 "spindle pole body organization"
            evidence=IEA] [GO:0090418 "positive regulation of transcription
            involved in S-phase of mitotic cell cycle" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0034599 "cellular
            response to oxidative stress" evidence=IEA] [GO:0007005
            "mitochondrion organization" evidence=IEA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 CGD:CAL0005400 GO:GO:0005634
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 EMBL:AACQ01000001 EMBL:AACQ01000002 eggNOG:COG5025
            KO:K09413 RefSeq:XP_723348.1 RefSeq:XP_723538.1
            ProteinModelPortal:Q5APB2 SMR:Q5APB2 GeneID:3634794 GeneID:3635054
            KEGG:cal:CaO19.12316 KEGG:cal:CaO19.4853 Uniprot:Q5APB2
        Length = 579

 Score = 206 (77.6 bits), Expect = 5.0e-14, P = 5.0e-14
 Identities = 42/108 (38%), Positives = 64/108 (59%)

Query:    18 SPME-PCQTSSHKPEPSQSEVEDRCCPS-HAKTHRKPPFTYTELIEQALKE--KHQLTVS 73
             SP++ P +T   K +   +    +   S + ++  KPP++Y  LI  ++    + +LT+S
Sbjct:   112 SPIKKPSETKKSKSKAKTNTSPPKASRSFNLQSEDKPPYSYATLIGISILSHPEKKLTLS 171

Query:    74 GIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGAGHLW 121
              IYQWIS+ F YY + D  W+NS+RHNLS+N  F KG K+  G GH W
Sbjct:   172 HIYQWISDTFKYYKKGDVGWQNSIRHNLSLNKAFIKGEKSKDGKGHFW 219


>UNIPROTKB|Q28BS5 [details] [associations]
            symbol:foxf1 "Forkhead box protein F1" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0003677 "DNA binding"
            evidence=ISS] [GO:0008283 "cell proliferation" evidence=ISS]
            [GO:0030509 "BMP signaling pathway" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0048566 "embryonic digestive tract development" evidence=ISS]
            [GO:0048745 "smooth muscle tissue development" evidence=ISS]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0045893 GO:GO:0030154 GO:GO:0003677
            GO:GO:0008283 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0030509 GO:GO:0048566
            eggNOG:COG5025 GO:GO:0048745 CTD:2294 HOGENOM:HOG000060124
            KO:K09399 HOVERGEN:HBG051644 EMBL:CR942666 RefSeq:NP_001039226.1
            UniGene:Str.13214 HSSP:Q01167 ProteinModelPortal:Q28BS5 SMR:Q28BS5
            STRING:Q28BS5 GeneID:734087 KEGG:xtr:734087 Xenbase:XB-GENE-478922
            Uniprot:Q28BS5
        Length = 373

 Score = 201 (75.8 bits), Expect = 6.4e-14, P = 6.4e-14
 Identities = 49/130 (37%), Positives = 68/130 (52%)

Query:     4 ASLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTH------RKPPFTYT 57
             A ++    +PP Q SPM    T  H  +PS  E  + C     KT+       KPP++Y 
Sbjct:     3 AEIQQPPSQPPAQSSPMSAA-TDKHGGQPSVMESAN-CATKTKKTNAGIRRPEKPPYSYI 60

Query:    58 ELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA-- 113
              LI  A++     +LT+S IYQ++  RFP++  +   WKNSVRHNLS+N  F K  K   
Sbjct:    61 ALIVMAIQSSPTKRLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLG 120

Query:   114 SQGAGHLWNL 123
               G GH W +
Sbjct:   121 RPGKGHYWTI 130


>UNIPROTKB|Q9W706 [details] [associations]
            symbol:foxf1-a "Forkhead box protein F1-A" species:8355
            "Xenopus laevis" [GO:0003677 "DNA binding" evidence=ISS;NAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] [GO:0008283 "cell proliferation" evidence=ISS]
            [GO:0030509 "BMP signaling pathway" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0048566 "embryonic digestive tract development" evidence=ISS]
            [GO:0048745 "smooth muscle tissue development" evidence=ISS]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0045893 GO:GO:0030154 GO:GO:0003677
            GO:GO:0008283 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0030509 GO:GO:0048566
            GO:GO:0048745 HSSP:Q99958 KO:K09399 HOVERGEN:HBG051644
            EMBL:AJ242680 RefSeq:NP_001084262.1 UniGene:Xl.182
            ProteinModelPortal:Q9W706 SMR:Q9W706 GeneID:399398 KEGG:xla:399398
            CTD:399398 Xenbase:XB-GENE-865226 Uniprot:Q9W706
        Length = 373

 Score = 201 (75.8 bits), Expect = 6.4e-14, P = 6.4e-14
 Identities = 49/130 (37%), Positives = 67/130 (51%)

Query:     4 ASLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTH------RKPPFTYT 57
             A ++    +PP Q SPM    T  H  +PS  E    C     KT+       KPP++Y 
Sbjct:     3 AEIQQPPSQPPAQSSPMSAA-TDKHGGQPSAMESAS-CATKTKKTNAGIRRPEKPPYSYI 60

Query:    58 ELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA-- 113
              LI  A++     +LT+S IYQ++  RFP++  +   WKNSVRHNLS+N  F K  K   
Sbjct:    61 ALIVMAIQSSPTKRLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLG 120

Query:   114 SQGAGHLWNL 123
               G GH W +
Sbjct:   121 RPGKGHYWTI 130


>ZFIN|ZDB-GENE-980526-404 [details] [associations]
            symbol:foxa2 "forkhead box A2" species:7955 "Danio
            rerio" [GO:0019904 "protein domain specific binding"
            evidence=IEA;IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA]
            [GO:0008134 "transcription factor binding" evidence=IEA;IBA]
            [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0007418 "ventral
            midline development" evidence=IMP] [GO:0048319 "axial mesoderm
            morphogenesis" evidence=IGI] [GO:0033504 "floor plate development"
            evidence=IMP] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0031018 "endocrine
            pancreas development" evidence=IBA] [GO:0021904 "dorsal/ventral
            neural tube patterning" evidence=IBA] [GO:0008301 "DNA binding,
            bending" evidence=IBA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IBA] [GO:0007596 "blood coagulation"
            evidence=IBA] [GO:0009952 "anterior/posterior pattern
            specification" evidence=IBA] [GO:0060441 "epithelial tube branching
            involved in lung morphogenesis" evidence=IBA] [GO:0001705 "ectoderm
            formation" evidence=IBA] [GO:0021533 "cell differentiation in
            hindbrain" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0060487 "lung epithelial cell differentiation"
            evidence=IBA] [GO:0045666 "positive regulation of neuron
            differentiation" evidence=IBA] [GO:0003705 "RNA polymerase II
            distal enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0048665 "neuron fate specification" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0021779 "oligodendrocyte cell fate commitment" evidence=IMP]
            [GO:0032289 "central nervous system myelin formation" evidence=IMP]
            [GO:0007492 "endoderm development" evidence=IGI;IMP] [GO:0005634
            "nucleus" evidence=IEA] [GO:0007275 "multicellular organismal
            development" evidence=IEA] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-980526-404 GO:GO:0019904 GO:GO:0009952 GO:GO:0007596
            GO:GO:0043565 GO:GO:0045665 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0003690
            GO:GO:0045666 GO:GO:0008134 GO:GO:0031018 GO:GO:0007492
            GO:GO:0060487 GO:GO:0048665 GO:GO:0051090 GO:GO:0021904
            GO:GO:0060441 GO:GO:0033504 GO:GO:0007418 GO:GO:0048319
            GO:GO:0032289 GO:GO:0021533 InterPro:IPR018533 Pfam:PF09354
            HOVERGEN:HBG006621 GO:GO:0001705 GO:GO:0021779 EMBL:BC086703
            IPI:IPI00502799 UniGene:Dr.483 ProteinModelPortal:Q5PRD6 SMR:Q5PRD6
            STRING:Q5PRD6 InParanoid:Q5PRD6 ArrayExpress:Q5PRD6 Uniprot:Q5PRD6
        Length = 409

 Score = 202 (76.2 bits), Expect = 6.7e-14, P = 6.7e-14
 Identities = 44/126 (34%), Positives = 65/126 (51%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPS---HAKTHRKPPFTYTELIE 61
             ++ PM  + P   +       ++  P   QS +     P     + TH KPP++Y  LI 
Sbjct:   102 TMSPMAAQAPSMNALTSYSNMNAMSPMYGQSNINRSRDPKTYRRSYTHAKPPYSYISLIT 161

Query:    62 QALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GA 117
              A+++     LT+S IYQWI + FP+Y QN  RW+NS+RH+LS N  F K  ++    G 
Sbjct:   162 MAIQQSPSKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGK 221

Query:   118 GHLWNL 123
             G  W L
Sbjct:   222 GSFWTL 227


>UNIPROTKB|Q6P839 [details] [associations]
            symbol:foxa4 "Forkhead box protein A4" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0003690 "double-stranded DNA
            binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0010817
            "regulation of hormone levels" evidence=IBA] [GO:0019904 "protein
            domain specific binding" evidence=IBA] [GO:0042593 "glucose
            homeostasis" evidence=IBA] [GO:0043565 "sequence-specific DNA
            binding" evidence=ISS] [GO:0045666 "positive regulation of neuron
            differentiation" evidence=IBA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0048665 "neuron fate specification" evidence=IBA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0060441
            "epithelial tube branching involved in lung morphogenesis"
            evidence=IBA] [GO:0060487 "lung epithelial cell differentiation"
            evidence=IBA] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0019904 GO:GO:0045892 GO:GO:0043565 GO:GO:0045944
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0042593 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0009790 GO:GO:0003690
            GO:GO:0045666 GO:GO:0008134 GO:GO:0007389 GO:GO:0060487
            GO:GO:0048665 GO:GO:0051090 GO:GO:0010817 GO:GO:0060441
            eggNOG:COG5025 HSSP:Q99958 InterPro:IPR018533 Pfam:PF09354
            HOGENOM:HOG000231817 HOVERGEN:HBG006621 OrthoDB:EOG43R3NB
            EMBL:CR762190 EMBL:BC061392 RefSeq:NP_988938.1 UniGene:Str.6030
            ProteinModelPortal:Q6P839 SMR:Q6P839 STRING:Q6P839 GeneID:394535
            KEGG:xtr:394535 CTD:394535 Xenbase:XB-GENE-486455 InParanoid:Q6P839
            Bgee:Q6P839 Uniprot:Q6P839
        Length = 399

 Score = 201 (75.8 bits), Expect = 8.1e-14, P = 8.1e-14
 Identities = 60/193 (31%), Positives = 93/193 (48%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAK---THRKPPFTYTELIE 61
             SL  M     G  +P  P  T ++     Q E E +  P   +   +H KPP++Y  LI 
Sbjct:    72 SLGSMTQGMVGSLAP--PASTPAYPMGYCQGESEFQRDPRTYRRNYSHAKPPYSYISLIT 129

Query:    62 QALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GA 117
              A+++     +T++ IYQWI + FPYY QN  RW+NS+RH+LS N  F K  ++ +  G 
Sbjct:   130 MAIQQAPNKMMTLNEIYQWIIDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVPRSPEKPGK 189

Query:   118 GHLWNL--SDMEPVEDAS----KSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSM 171
             G  W L        E+      +  +K  R K+     + ++ GD+ +G +  ETP    
Sbjct:   190 GSYWTLHPESGNMFENGCYLRRQKRFKCERSKSGEREKKVNKPGDE-NGGSLKETPVGYD 248

Query:   172 ETMPQPQPQ-PLN 183
             +      PQ P+N
Sbjct:   249 DCSSSRSPQAPVN 261


>POMBASE|SPBC16G5.15c [details] [associations]
            symbol:fkh2 "fork head transcription factor Fkh2"
            species:4896 "Schizosaccharomyces pombe" [GO:0000117 "regulation of
            transcription involved in G2/M-phase of mitotic cell cycle"
            evidence=IC] [GO:0000978 "RNA polymerase II core promoter proximal
            region sequence-specific DNA binding" evidence=ISM;IDA] [GO:0000982
            "RNA polymerase II core promoter proximal region sequence-specific
            DNA binding transcription factor activity" evidence=IC;IDA]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IDA;IMP]
            [GO:0001078 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in negative regulation of transcription" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0007135 "meiosis II" evidence=IMP] [GO:0010389 "regulation of
            G2/M transition of mitotic cell cycle" evidence=IMP] [GO:0010514
            "induction of conjugation with cellular fusion" evidence=IMP]
            [GO:0030437 "ascospore formation" evidence=IMP] [GO:0033554
            "cellular response to stress" evidence=IMP] [GO:0045896 "regulation
            of transcription during mitosis" evidence=IGI;IDA;IMP] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IMP] [GO:0097221 "MADS box-forkhead
            transcription factor complex" evidence=IDA] [GO:1900405 "regulation
            of cytokinetic cell separation by regulation of transcription from
            RNA polymerase II promoter" evidence=IMP] [GO:1901037 "regulation
            of transcription from RNA polymerase II promoter during M/G1
            transition of mitotic cell cycle" evidence=IC] InterPro:IPR000253
            InterPro:IPR001766 InterPro:IPR008984 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF00498 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50006 PROSITE:PS50039 SMART:SM00240
            SMART:SM00339 PomBase:SPBC16G5.15c GO:GO:0033554 EMBL:CU329671
            GO:GO:0001078 Gene3D:1.10.10.10 InterPro:IPR011991
            GenomeReviews:CU329671_GR Gene3D:2.60.200.20 SUPFAM:SSF49879
            GO:GO:0000978 GO:GO:0001077 GO:GO:1900405 GO:GO:0045896
            GO:GO:0000917 GO:GO:0010389 GO:GO:0030437 GO:GO:0000117
            GO:GO:0007135 eggNOG:COG5025 OrthoDB:EOG4R7ZKG PIR:T39607
            RefSeq:NP_596764.1 ProteinModelPortal:O60129 STRING:O60129
            EnsemblFungi:SPBC16G5.15c.1 GeneID:2539703 KEGG:spo:SPBC16G5.15c
            NextBio:20800855 GO:GO:0097221 GO:GO:0010514 GO:GO:1901037
            Uniprot:O60129
        Length = 642

 Score = 204 (76.9 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 64/217 (29%), Positives = 101/217 (46%)

Query:     1 MEYASLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPS-HAKTHRKPPFTYTEL 59
             +E A L+ M + P    +  +    S+ K +  +SE+      +     ++KPP++Y+ +
Sbjct:   174 LEVAGLQMMFVLPNA--AEQKQTDESTIKEDAIKSEISAAVNDAAEYGDNKKPPYSYSVM 231

Query:    60 IEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKAS--Q 115
             I QA+    +  +T+S IY WIS  +PYY      W+NS+RHNLS+N  FRK  + S  Q
Sbjct:   232 IAQAILSSSECMMTLSNIYSWISTHYPYYRTTKSGWQNSIRHNLSLNKAFRKVPRKSGEQ 291

Query:   116 GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPA-PSMETM 174
             G G  W++      E  +K+  +K   K    S  P        G  S   P  P M+  
Sbjct:   292 GKGMKWSIVPEFREEFIAKT--RKTPRKRSPSSPVPL-LAKKREGSPSLPIPILPKMKDT 348

Query:   175 PQPQPQPLNTMSLAHD--PLQPFEVYSQESKTFPYEE 209
               P  +P ++ + A D  P  P +V S  +     EE
Sbjct:   349 SIPAAEPASSTTSARDQTPSTPKDVGSPSTAETSAEE 385


>UNIPROTKB|Q6P2Z3 [details] [associations]
            symbol:foxi1 "Forkhead box protein I1" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0003690 "double-stranded DNA
            binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0007398 "ectoderm development" evidence=ISS] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0009957 "epidermal cell fate
            specification" evidence=IBA] [GO:0043049 "otic placode formation"
            evidence=IBA] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISS] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0048264 "determination of ventral
            identity" evidence=ISS] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0045893 GO:GO:0007399 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0048264 GO:GO:0008134
            GO:GO:0007398 GO:GO:0051090 GO:GO:0043049 eggNOG:COG5025
            GO:GO:0009957 HSSP:Q99958 GeneTree:ENSGT00690000101636
            HOGENOM:HOG000236333 HOVERGEN:HBG067944 KO:K09401 EMBL:CR761756
            EMBL:BC064241 RefSeq:NP_989265.1 UniGene:Str.16160
            ProteinModelPortal:Q6P2Z3 SMR:Q6P2Z3 STRING:Q6P2Z3
            Ensembl:ENSXETT00000004118 GeneID:394878 KEGG:xtr:394878 CTD:394878
            Xenbase:XB-GENE-487658 InParanoid:Q6P2Z3 OrthoDB:EOG457573
            Bgee:Q6P2Z3 Uniprot:Q6P2Z3
        Length = 363

 Score = 198 (74.8 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 53/185 (28%), Positives = 94/185 (50%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHR--KPPFTYTELIEQ 62
             S  P    PP   +P    Q   + P    +E+      S  +  +  +PP++Y+ LI  
Sbjct:    79 SPSPAPYMPPSFGAPQR--QFLPNSPAFGGTELSWMSAASQEELLKMVRPPYSYSALIAM 136

Query:    63 ALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAG 118
             A++     +LT+S IYQ+++E FP+Y ++   W+NS+RHNLS+N  F+K  +     G G
Sbjct:   137 AIQHASDRRLTLSQIYQYVAENFPFYKKSKAGWQNSIRHNLSLNDCFKKVPRDENDPGKG 196

Query:   119 HLWNLS-DMEPVEDASKSNWKKNRL-KTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQ 176
             + W L  + E + D    N+++ R  K+   S + ++ G+D+      E+P     + P+
Sbjct:   197 NYWTLDPNCEKMFD--NGNFRRKRKPKSDANSAKIAKIGEDHLNPKGKESPPMITPSSPE 254

Query:   177 PQPQP 181
              +P P
Sbjct:   255 -EPSP 258


>UNIPROTKB|F1MNS7 [details] [associations]
            symbol:FOXA1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0060743 "epithelial cell maturation involved in
            prostate gland development" evidence=IEA] [GO:0060741 "prostate
            gland stromal morphogenesis" evidence=IEA] [GO:0060740 "prostate
            gland epithelium morphogenesis" evidence=IEA] [GO:0060738
            "epithelial-mesenchymal signaling involved in prostate gland
            development" evidence=IEA] [GO:0060528 "secretory columnal luminar
            epithelial cell differentiation involved in prostate glandular
            acinus development" evidence=IEA] [GO:0060487 "lung epithelial cell
            differentiation" evidence=IEA] [GO:0060441 "epithelial tube
            branching involved in lung morphogenesis" evidence=IEA] [GO:0051091
            "positive regulation of sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0048665 "neuron fate
            specification" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045931 "positive regulation of mitotic cell cycle"
            evidence=IEA] [GO:0045666 "positive regulation of neuron
            differentiation" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0042593 "glucose
            homeostasis" evidence=IEA] [GO:0042445 "hormone metabolic process"
            evidence=IEA] [GO:0033148 "positive regulation of intracellular
            estrogen receptor signaling pathway" evidence=IEA] [GO:0032355
            "response to estradiol stimulus" evidence=IEA] [GO:0010719
            "negative regulation of epithelial to mesenchymal transition"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0019904 "protein domain specific binding" evidence=IEA]
            [GO:0008134 "transcription factor binding" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR013638 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0051091 GO:GO:0032355 GO:GO:0045931 GO:GO:0043565
            GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0042593 GO:GO:0006338 GO:GO:0044212 GO:GO:0045666
            GO:GO:0042445 GO:GO:0033148 GO:GO:0060740 GO:GO:0060487
            GO:GO:0048665 GO:GO:0060441 GO:GO:0010719 GO:GO:0060741
            GeneTree:ENSGT00700000104475 GO:GO:0060743 InterPro:IPR018533
            Pfam:PF09354 CTD:3169 KO:K09387 OMA:ALEPSYY GO:GO:0060738
            GO:GO:0060528 EMBL:DAAA02052774 IPI:IPI00923961
            RefSeq:NP_001192958.1 UniGene:Bt.88447 Ensembl:ENSBTAT00000061052
            GeneID:503579 KEGG:bta:503579 NextBio:20866216 Uniprot:F1MNS7
        Length = 468

 Score = 194 (73.4 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 37/79 (46%), Positives = 49/79 (62%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY QN  RW+NS+RH+LS N  
Sbjct:   168 HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDC 227

Query:   107 FRKGVKASQ--GAGHLWNL 123
             F K  ++    G G  W L
Sbjct:   228 FVKVARSPDKPGKGSYWTL 246

 Score = 45 (20.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query:   227 HEDHKLYHNDNVLYTPGEDHKLYQYEPSKNLIMAAYDGGQEKVEIFA 273
             H  H L  +++ L+  G+ H  + +  S N +M++ +  Q K++  A
Sbjct:   370 HPAHALAPHESQLHMKGDPHYSFNHPFSINNLMSSSEQ-QHKLDFKA 415


>UNIPROTKB|Q4VUF1 [details] [associations]
            symbol:FOXL2 "Forkhead box protein L2" species:39086
            "Ellobius lutescens" [GO:0001541 "ovarian follicle development"
            evidence=ISS] [GO:0002074 "extraocular skeletal muscle development"
            evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006309
            "apoptotic DNA fragmentation" evidence=ISS] [GO:0042703
            "menstruation" evidence=ISS] [GO:0043028 "cysteine-type
            endopeptidase regulator activity involved in apoptotic process"
            evidence=ISS] [GO:0043065 "positive regulation of apoptotic
            process" evidence=ISS] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=ISS] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0005634 GO:GO:0045893
            GO:GO:0030154 GO:GO:0003677 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0043065
            GO:GO:0043280 GO:GO:0001541 GO:GO:0006309 GO:GO:0002074 HSSP:Q99958
            HOVERGEN:HBG051651 GO:GO:0043028 GO:GO:0042703 EMBL:AY623815
            ProteinModelPortal:Q4VUF1 SMR:Q4VUF1 Uniprot:Q4VUF1
        Length = 373

 Score = 193 (73.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
 Identities = 45/118 (38%), Positives = 67/118 (56%)

Query:    30 PEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYN 87
             P PS  +      P      +KPP++Y  LI  A++E  + +LT+SGIYQ+I  +FP+Y 
Sbjct:    30 PPPSPGK-GGGTAPEKPDPAQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYE 88

Query:    88 QNDDRWKNSVRHNLSINPHFRKGVKASQGA--GHLWNLSDMEPV-EDA-SKSNWKKNR 141
             +N   W+NS+RHNLS+N  F K  +   G   G+ W L   +P  ED   K N+++ R
Sbjct:    89 KNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTL---DPACEDMFEKGNYRRRR 143

 Score = 41 (19.5 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query:   160 GQNSTETPAPSMETMPQPQPQPLNTMSLAHDP---LQPFEVYSQESKT 204
             GQ S  +PA +    P P   P    + A  P   +     +  +SKT
Sbjct:   317 GQLSPSSPATAAPPAPAPTSAPGLQFACARQPELAMMHCSYWDHDSKT 364


>UNIPROTKB|P84961 [details] [associations]
            symbol:foxa2-b "Forkhead box protein A2-B" species:8355
            "Xenopus laevis" [GO:0001707 "mesoderm formation" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=NAS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=NAS] [GO:0005634 "nucleus" evidence=NAS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0045893 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0001707
            InterPro:IPR018533 Pfam:PF09354 HOVERGEN:HBG006621
            ProteinModelPortal:P84961 SMR:P84961 Uniprot:P84961
        Length = 433

 Score = 198 (74.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 44/126 (34%), Positives = 64/126 (50%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPS---HAKTHRKPPFTYTELIE 61
             S+ PM  +     +       +S  P   QS +     P     + TH KPP++Y  LI 
Sbjct:    98 SMSPMSAQATSMNALAPYTNINSMSPIYGQSNINRSRDPKTYRRSYTHAKPPYSYISLIT 157

Query:    62 QALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GA 117
              A+++     LT+S +YQWI + FP+Y QN  RW+NS+RH+LS N  F K  ++    G 
Sbjct:   158 MAIQQSPSKMLTLSEVYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGK 217

Query:   118 GHLWNL 123
             G  W L
Sbjct:   218 GSFWTL 223

 Score = 38 (18.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 20/83 (24%), Positives = 34/83 (40%)

Query:   168 APSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLYIQSNDNVLYTPH 227
             +P   T P  Q Q L  +S  H  L     +  +S   P E      +  S +N++ +  
Sbjct:   307 SPEHATSPASQAQHL--LSQHHSVLS----HEAQSHLKP-EHHYSFNHPFSINNLMSSEQ 359

Query:   228 EDHKLYHNDNVLYTPGEDHKLYQ 250
             + H  +H+ N  +    D K Y+
Sbjct:   360 QHHHHHHHHNHQHHHKMDLKAYE 382


>UNIPROTKB|E9PM37 [details] [associations]
            symbol:FOXK2 "Forkhead box protein K2" species:9606 "Homo
            sapiens" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 EMBL:AC124287 HGNC:HGNC:6036
            ChiTaRS:FOXK2 EMBL:AC124283 IPI:IPI01013081
            ProteinModelPortal:E9PM37 SMR:E9PM37 Ensembl:ENST00000531030
            ArrayExpress:E9PM37 Bgee:E9PM37 Uniprot:E9PM37
        Length = 172

 Score = 180 (68.4 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 41/108 (37%), Positives = 62/108 (57%)

Query:    33 SQSEVEDRCCPSHA-KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQN 89
             SQ E E       + K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY   
Sbjct:    50 SQPENEKEASGGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTA 109

Query:    90 DDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
             D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + +E A
Sbjct:   110 DKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQA 157


>MGI|MGI:2443432 [details] [associations]
            symbol:Foxj3 "forkhead box J3" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0007389 "pattern specification
            process" evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0009888 "tissue
            development" evidence=IBA] [GO:0019904 "protein domain specific
            binding" evidence=IBA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IBA] [GO:0048513 "organ development"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            MGI:MGI:2443432 GO:GO:0019904 GO:GO:0045893 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000122 GO:GO:0008301 GO:GO:0009790 GO:GO:0003690
            GO:GO:0008134 GO:GO:0007389 GO:GO:0051090 GO:GO:0048513
            eggNOG:COG5025 GO:GO:0009888 GeneTree:ENSGT00700000104094
            HOGENOM:HOG000231184 HOVERGEN:HBG051648 KO:K09403 CTD:22887
            OMA:MSQQHMM OrthoDB:EOG4MCX01 EMBL:AK082840 EMBL:AK129271
            EMBL:AK139508 EMBL:AL645563 EMBL:BC058231 IPI:IPI00225578
            IPI:IPI00417077 RefSeq:NP_766287.1 UniGene:Mm.259227
            ProteinModelPortal:Q8BUR3 SMR:Q8BUR3 STRING:Q8BUR3
            PhosphoSite:Q8BUR3 PRIDE:Q8BUR3 Ensembl:ENSMUST00000044564
            Ensembl:ENSMUST00000106310 GeneID:230700 KEGG:mmu:230700
            UCSC:uc008umt.1 UCSC:uc008umu.1 InParanoid:A2AA37 NextBio:380061
            Bgee:Q8BUR3 CleanEx:MM_FOXJ3 Genevestigator:Q8BUR3
            GermOnline:ENSMUSG00000032998 Uniprot:Q8BUR3
        Length = 623

 Score = 193 (73.0 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 44/114 (38%), Positives = 61/114 (53%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    K ++T+S IYQWI + FPYY +    WKNS+RHNLS+N  F 
Sbjct:    78 KPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFL 137

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSG 160
             K  ++    G G  W + D  P ED   +  KK R ++   +  P     D  G
Sbjct:   138 KVPRSKDDPGKGSYWAI-DTNPKEDTLPTRPKK-RARSVERASTPYSIDSDSLG 189

 Score = 50 (22.7 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 19/98 (19%), Positives = 41/98 (41%)

Query:   156 DDYSGQNSTETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLY 215
             +++SG ++T + + +  ++  PQ  P  +    H P +P  +     +  P        +
Sbjct:   353 NNHSGLSATGSNSVAQVSLSHPQMHPQPS---PHTPHRPHGLPQHPQR--PQHPAP---H 404

Query:   216 IQSNDNVLYTPHEDHKLYHNDNVLYTPGEDHKLYQYEP 253
              Q +   L  PH  H   H  ++ + P   H+   ++P
Sbjct:   405 PQQHSQ-LQPPHSQHPPPHQ-HIQHHPNHQHQTLAHQP 440


>UNIPROTKB|Q70VZ4 [details] [associations]
            symbol:foxL "FoxL protein" species:7719 "Ciona
            intestinalis" [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006309 "apoptotic DNA fragmentation"
            evidence=IBA] [GO:0006917 "induction of apoptosis" evidence=IBA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0009790
            "embryo development" evidence=IBA] [GO:0009888 "tissue development"
            evidence=IBA] [GO:0030331 "estrogen receptor binding" evidence=IBA]
            [GO:0031624 "ubiquitin conjugating enzyme binding" evidence=IBA]
            [GO:0043028 "cysteine-type endopeptidase regulator activity
            involved in apoptotic process" evidence=IBA] [GO:0043280 "positive
            regulation of cysteine-type endopeptidase activity involved in
            apoptotic process" evidence=IBA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0048513 "organ development" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0006917 GO:GO:0043565
            GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0009790 GO:GO:0003690
            GO:GO:0043280 GO:GO:0006309 GO:GO:0008134 GO:GO:0007389
            GO:GO:0030331 GO:GO:0051090 GO:GO:0048513 GO:GO:0009888 HSSP:Q01167
            KO:K09405 GO:GO:0043028 GO:GO:0031624 EMBL:AJ534400
            RefSeq:NP_001027769.1 UniGene:Cin.15633 ProteinModelPortal:Q70VZ4
            SMR:Q70VZ4 GeneID:445798 KEGG:cin:445798 CTD:445798
            HOGENOM:HOG000204706 InParanoid:Q70VZ4 Uniprot:Q70VZ4
        Length = 387

 Score = 189 (71.6 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
 Identities = 41/113 (36%), Positives = 67/113 (59%)

Query:    33 SQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQND 90
             S+S+      P   +T +KPP++Y  LI  A+++ ++  LT+SGIYQ+I ++FP+Y +N 
Sbjct:   109 SKSQKPSEKDPEKNRT-QKPPYSYVALIAMAIRDSNEKKLTLSGIYQYIVDKFPFYEKNR 167

Query:    91 DRWKNSVRHNLSINPHFRKGVKASQGA--GHLWNLSDMEPVEDASKSNWKKNR 141
               W+NS+RHNLS+N  F K  +   G   G+ W L D    +     N+++ R
Sbjct:   168 KGWQNSIRHNLSLNECFVKVPREGGGERKGNFWML-DSNCEDMFENGNYRRRR 219

 Score = 46 (21.3 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query:   155 GDDYSGQNSTETPAPSMETMPQPQPQPLNTM 185
             G  YS Q+  E+P  S   M  P   P +TM
Sbjct:   343 GYQYSPQSPPESPVVSQCAMAAPTYYPGDTM 373


>UNIPROTKB|Q7T1R4 [details] [associations]
            symbol:foxa2 "Forkhead box protein A2" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0001705 "ectoderm formation"
            evidence=IBA] [GO:0001707 "mesoderm formation" evidence=ISS]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007492 "endoderm development" evidence=IBA]
            [GO:0007596 "blood coagulation" evidence=IBA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0009952 "anterior/posterior
            pattern specification" evidence=IBA] [GO:0019904 "protein domain
            specific binding" evidence=IBA] [GO:0021533 "cell differentiation
            in hindbrain" evidence=IBA] [GO:0021779 "oligodendrocyte cell fate
            commitment" evidence=IBA] [GO:0021904 "dorsal/ventral neural tube
            patterning" evidence=IBA] [GO:0031018 "endocrine pancreas
            development" evidence=IBA] [GO:0032289 "central nervous system
            myelin formation" evidence=IBA] [GO:0043565 "sequence-specific DNA
            binding" evidence=ISS] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IBA] [GO:0045666 "positive regulation of
            neuron differentiation" evidence=IBA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0048665 "neuron fate specification" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0060441 "epithelial tube branching
            involved in lung morphogenesis" evidence=IBA] [GO:0060487 "lung
            epithelial cell differentiation" evidence=IBA] InterPro:IPR001766
            InterPro:IPR013638 InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0019904 GO:GO:0045893 GO:GO:0009952
            GO:GO:0007596 GO:GO:0043565 GO:GO:0045665 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0003690 GO:GO:0001707 GO:GO:0045666 GO:GO:0008134
            GO:GO:0031018 GO:GO:0007492 GO:GO:0060487 GO:GO:0048665
            GO:GO:0051090 GO:GO:0021904 GO:GO:0060441 eggNOG:COG5025
            GeneTree:ENSGT00700000104475 GO:GO:0032289 HSSP:Q99958
            GO:GO:0021533 KO:K08035 InterPro:IPR018533 Pfam:PF09354
            HOGENOM:HOG000231817 HOVERGEN:HBG006621 OrthoDB:EOG466VMM CTD:3170
            GO:GO:0001705 GO:GO:0021779 EMBL:AY260736 EMBL:CR848398
            EMBL:BC088590 RefSeq:NP_989423.1 UniGene:Str.8107
            ProteinModelPortal:Q7T1R4 SMR:Q7T1R4 STRING:Q7T1R4
            Ensembl:ENSXETT00000056642 GeneID:395063 KEGG:xtr:395063
            Xenbase:XB-GENE-480476 InParanoid:Q7T1R4 Bgee:Q7T1R4 Uniprot:Q7T1R4
        Length = 434

 Score = 199 (75.1 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 45/126 (35%), Positives = 64/126 (50%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPS---HAKTHRKPPFTYTELIE 61
             S+ PM  +     +       +S  P   QS +     P     + TH KPP++Y  LI 
Sbjct:   100 SMSPMSAQATSMNALAPYTNMNSMSPIYGQSNINRSRDPKTYRRSYTHAKPPYSYISLIT 159

Query:    62 QALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GA 117
              A+++     LT+S IYQWI + FP+Y QN  RW+NS+RH+LS N  F K  ++    G 
Sbjct:   160 MAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGK 219

Query:   118 GHLWNL 123
             G  W L
Sbjct:   220 GSFWTL 225


>ZFIN|ZDB-GENE-040217-1 [details] [associations]
            symbol:ches1 "checkpoint suppressor 1" species:7955
            "Danio rerio" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0009888 "tissue development"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 ZFIN:ZDB-GENE-040217-1 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 GO:GO:0009888
            GeneTree:ENSGT00700000104051 EMBL:BX890568 IPI:IPI00900072
            RefSeq:NP_001116217.1 UniGene:Dr.144120 Ensembl:ENSDART00000104137
            GeneID:555843 KEGG:dre:555843 CTD:555843 NextBio:20881192
            Uniprot:F1QZ26
        Length = 443

 Score = 199 (75.1 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 48/113 (42%), Positives = 66/113 (58%)

Query:    18 SPMEPCQTSSHKPEPSQSEVEDRCCPSHAKT--HRKPPFTYTELIEQALKE--KHQLTVS 73
             SP++     +H+P PS S  E    P H  T   RKPP++++ LI  A+++    +L V 
Sbjct:    77 SPVQDAN-GAHEPSPSSSP-EPNEPPYHLSTGPSRKPPYSFSCLIFMAIEDAPSKRLPVK 134

Query:    74 GIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK-ASQ--GAGHLWNL 123
              IY WI E FPY++     WKNSVRHNLS+N  F+K  K  SQ  G G LW++
Sbjct:   135 DIYGWILEHFPYFSSAPTGWKNSVRHNLSLNKCFKKVDKDRSQSIGKGSLWSI 187


>RGD|1306389 [details] [associations]
            symbol:Foxn4 "forkhead box N4" species:10116 "Rattus norvegicus"
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008016 "regulation of
            heart contraction" evidence=IBA] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0030154 "cell
            differentiation" evidence=ISO] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0048513 "organ development"
            evidence=IBA] [GO:0048663 "neuron fate commitment"
            evidence=IEA;ISO] [GO:0048675 "axon extension" evidence=IBA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 RGD:1306389 GO:GO:0043565
            GO:GO:0008016 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0009790 GO:GO:0003690
            GO:GO:0008134 GO:GO:0007389 GO:GO:0051090 GO:GO:0048513
            GO:GO:0048675 GO:GO:0009888 GeneTree:ENSGT00700000104051
            IPI:IPI00951428 Ensembl:ENSRNOT00000065060 Uniprot:F1M4N5
        Length = 448

 Score = 199 (75.1 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 58/186 (31%), Positives = 85/186 (45%)

Query:    44 SHAKTHRKPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNL 101
             +H K + KP ++Y+ LI  ALK      L VS IY ++ E FPY+    D WKNSVRHNL
Sbjct:   161 AHPKHYPKPIYSYSCLIAMALKSSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNSVRHNL 220

Query:   102 SINPHFRKGVKASQGA---GHLW--NLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGD 156
             S+N  F K      G+   G LW  NL+ ++ VE+     WK+  L     S+   E  D
Sbjct:   221 SLNKCFEKVETKPSGSSRKGCLWALNLARIDKVEE-EMHKWKRKDLAAIHRSMANPEELD 279

Query:   157 DYSGQNSTETPAPSMETMPQ-PQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLY 215
                         P  +  P+ P      T+++ H  L   ++  +   T   +   D L 
Sbjct:   280 KLISDRPESCRRPGKQGEPEVPVLTRATTVAMTHSCLAISQLPPKPLMTLSLQVPGDFLN 339

Query:   216 IQSNDN 221
             I ++ N
Sbjct:   340 ISTDTN 345


>ZFIN|ZDB-GENE-030131-2861 [details] [associations]
            symbol:foxk2 "forkhead box K2" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0000287 "magnesium
            ion binding" evidence=IBA] [GO:0007389 "pattern specification
            process" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000253 InterPro:IPR001766
            InterPro:IPR008984 InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006
            PROSITE:PS50039 SMART:SM00240 SMART:SM00339
            ZFIN:ZDB-GENE-030131-2861 GO:GO:0000287 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 Gene3D:2.60.200.20
            SUPFAM:SSF49879 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0009790 GO:GO:0003690 GO:GO:0008134 GO:GO:0007389
            GO:GO:0051090 GO:GO:0009888 HOGENOM:HOG000072588 HOVERGEN:HBG051649
            EMBL:BC159229 IPI:IPI00493023 UniGene:Dr.77018 ArrayExpress:B0JZL4
            Uniprot:B0JZL4
        Length = 585

 Score = 201 (75.8 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 62/190 (32%), Positives = 95/190 (50%)

Query:    31 EPSQSEVEDRCCPSHA-KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYN 87
             E SQSE++       + K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY 
Sbjct:   224 ENSQSEIDKEASGGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYR 283

Query:    88 QNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDASKSNWKKNR- 141
               D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + ++ A +    +   
Sbjct:   284 TADKGWQNSIRHNLSLNRYFIKVARSQEEPGKGSFWRIDPSSEGKLMDQAFRKRRPRGVP 343

Query:   142 -LKTYLESLQ-------PSEWGDDYSGQNSTETPAPSMETMPQP-QPQPLNTMSLAHDPL 192
               +T L  L        P+  G   +  +  +TP  S E  P P +P+P    S A  P 
Sbjct:   344 CFRTPLGPLSSRSAPASPTHTGVLSAHSSGVQTPDSSREGSPLPLEPEP----SAAAAP- 398

Query:   193 QPFEVYSQES 202
             QP     QES
Sbjct:   399 QPKLAVIQES 408


>WB|WBGene00001442 [details] [associations]
            symbol:fkh-10 species:6239 "Caenorhabditis elegans"
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0043565 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0009790 GO:GO:0003690 EMBL:Z81038 GO:GO:0008134 GO:GO:0007389
            GO:GO:0051090 eggNOG:COG5025 GO:GO:0009888
            GeneTree:ENSGT00700000104051 RefSeq:NP_492676.2
            ProteinModelPortal:O17593 SMR:O17593 EnsemblMetazoa:C25A1.2.1
            EnsemblMetazoa:C25A1.2.2 GeneID:182874 KEGG:cel:CELE_C25A1.2
            UCSC:C25A1.2 CTD:182874 WormBase:C25A1.2 HOGENOM:HOG000019588
            InParanoid:O17593 OMA:EVYEWIM NextBio:919142 Uniprot:O17593
        Length = 194

 Score = 179 (68.1 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 42/150 (28%), Positives = 73/150 (48%)

Query:    51 KPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KP  +Y  LI  A+    Q  + ++ +Y+WI   +PY+      W+NS+RHNLS+N  F 
Sbjct:    42 KPQHSYIGLIAMAILSSPQKKMVLAEVYEWIMNEYPYFRSRGAGWRNSIRHNLSLNDCFV 101

Query:   109 KGVKASQGAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPA 168
             K  +A+ G GH W +     V+D  + ++++ R +  +      +  D   G +S E  +
Sbjct:   102 KAGRAANGKGHYWAVHPA-CVKDFERGDFRRRRAQRKVRRHMGLQVED---GDSSDEEGS 157

Query:   169 PSMETMPQPQPQPLNTMSLA-HDPLQPFEV 197
             P  +  P   P  L   + A   P++ F +
Sbjct:   158 PGSDPSPPIFPTALWNFNCAPRAPIKSFTI 187


>UNIPROTKB|O17593 [details] [associations]
            symbol:fkh-10 "Protein FKH-10" species:6239 "Caenorhabditis
            elegans" [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0009888 "tissue
            development" evidence=IBA] [GO:0009790 "embryo development"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 EMBL:Z81038
            GO:GO:0008134 GO:GO:0007389 GO:GO:0051090 eggNOG:COG5025
            GO:GO:0009888 GeneTree:ENSGT00700000104051 RefSeq:NP_492676.2
            ProteinModelPortal:O17593 SMR:O17593 EnsemblMetazoa:C25A1.2.1
            EnsemblMetazoa:C25A1.2.2 GeneID:182874 KEGG:cel:CELE_C25A1.2
            UCSC:C25A1.2 CTD:182874 WormBase:C25A1.2 HOGENOM:HOG000019588
            InParanoid:O17593 OMA:EVYEWIM NextBio:919142 Uniprot:O17593
        Length = 194

 Score = 179 (68.1 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 42/150 (28%), Positives = 73/150 (48%)

Query:    51 KPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KP  +Y  LI  A+    Q  + ++ +Y+WI   +PY+      W+NS+RHNLS+N  F 
Sbjct:    42 KPQHSYIGLIAMAILSSPQKKMVLAEVYEWIMNEYPYFRSRGAGWRNSIRHNLSLNDCFV 101

Query:   109 KGVKASQGAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPA 168
             K  +A+ G GH W +     V+D  + ++++ R +  +      +  D   G +S E  +
Sbjct:   102 KAGRAANGKGHYWAVHPA-CVKDFERGDFRRRRAQRKVRRHMGLQVED---GDSSDEEGS 157

Query:   169 PSMETMPQPQPQPLNTMSLA-HDPLQPFEV 197
             P  +  P   P  L   + A   P++ F +
Sbjct:   158 PGSDPSPPIFPTALWNFNCAPRAPIKSFTI 187


>UNIPROTKB|C9JVP0 [details] [associations]
            symbol:FOXJ3 "Forkhead box protein J3" species:9606 "Homo
            sapiens" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 EMBL:CH471059 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            HOGENOM:HOG000231184 EMBL:AC096540 EMBL:AC114492 IPI:IPI00414683
            UniGene:Hs.26023 HGNC:HGNC:29178 ChiTaRS:FOXJ3 SMR:C9JVP0
            STRING:C9JVP0 Ensembl:ENST00000445886 Uniprot:C9JVP0
        Length = 382

 Score = 192 (72.6 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
 Identities = 40/93 (43%), Positives = 54/93 (58%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    K ++T+S IYQWI + FPYY +    WKNS+RHNLS+N  F 
Sbjct:    78 KPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFL 137

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKK 139
             K  ++    G G  W + D  P ED   +  KK
Sbjct:   138 KVPRSKDDPGKGSYWAI-DTNPKEDVLPTRPKK 169

 Score = 41 (19.5 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query:   155 GDDYSGQNSTETPA---PSMETMPQPQPQPLNTMSLAHDP 191
             G + +G NS    +   P M T P P P P     L   P
Sbjct:   322 GLNTTGSNSVAQVSLSHPQMHTQPSPHP-PHRPHGLPQHP 360


>UNIPROTKB|Q9PRJ8 [details] [associations]
            symbol:foxd5-a "Forkhead box protein D5-A" species:8355
            "Xenopus laevis" [GO:0001840 "neural plate development"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=NAS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=NAS] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0009953 "dorsal/ventral pattern formation" evidence=IMP]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IDA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0045892 GO:GO:0007399
            GO:GO:0030154 GO:GO:0003677 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0009953
            GO:GO:0001840 HSSP:Q63245 HOVERGEN:HBG051641 EMBL:AJ242676
            EMBL:AF162782 EMBL:AJ850135 RefSeq:NP_001081998.1 UniGene:Xl.642
            ProteinModelPortal:Q9PRJ8 SMR:Q9PRJ8 GeneID:398170 KEGG:xla:398170
            CTD:398170 Xenbase:XB-GENE-865254 Uniprot:Q9PRJ8
        Length = 352

 Score = 195 (73.7 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 60/196 (30%), Positives = 88/196 (44%)

Query:    10 ELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHR---KPPFTYTELIEQA-LK 65
             E+  P + S  E    SS + E   S+ +    P+ +K  R   KPP++Y  LI  A L+
Sbjct:    54 EMLSPSKLSCTESESDSSGESEGGTSK-DSSTTPTGSKAKRTLVKPPYSYIALITMAILQ 112

Query:    66 EKHQ-LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWN 122
               H+ LT+SGI  +IS +FPYY      W+NS+RHNLS+N  F K  +   + G G+ W 
Sbjct:   113 SPHKKLTLSGICDFISSKFPYYKDKFPAWQNSIRHNLSLNDCFIKIPREPGNPGKGNYWT 172

Query:   123 LSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQPL 182
             L   +P  +    N    R +   +  Q   + D     NS     P     PQP  Q  
Sbjct:   173 L---DPASEDMFDNGSFLRRRKRFKRHQQEFFKDGLMMYNSLPYYRPYSAIQPQPVLQQT 229

Query:   183 NTMSLAHDPLQPFEVY 198
             +   +A     P   +
Sbjct:   230 SLTCMAIPETLPMSTH 245


>ASPGD|ASPL0000039161 [details] [associations]
            symbol:AN2854 species:162425 "Emericella nidulans"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000978 "RNA polymerase II
            core promoter proximal region sequence-specific DNA binding"
            evidence=IEA] [GO:0019237 "centromeric DNA binding" evidence=IEA]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IEA]
            [GO:0001078 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in negative regulation of transcription" evidence=IEA]
            [GO:0060277 "negative regulation of transcription involved in G1
            phase of mitotic cell cycle" evidence=IEA] [GO:0006338 "chromatin
            remodeling" evidence=IEA] [GO:0090419 "negative regulation of
            transcription involved in G2/M-phase of mitotic cell cycle"
            evidence=IEA] [GO:0090282 "positive regulation of transcription
            involved in G2/M-phase of mitotic cell cycle" evidence=IEA]
            [GO:0034244 "negative regulation of transcription elongation from
            RNA polymerase II promoter" evidence=IEA] [GO:0031124 "mRNA 3'-end
            processing" evidence=IEA] [GO:0006369 "termination of RNA
            polymerase II transcription" evidence=IEA] [GO:0090055 "positive
            regulation of chromatin silencing at silent mating-type cassette"
            evidence=IEA] [GO:0007535 "donor selection" evidence=IEA]
            [GO:2000221 "negative regulation of pseudohyphal growth"
            evidence=IEA] [GO:0071406 "cellular response to methylmercury"
            evidence=IEA] InterPro:IPR000253 InterPro:IPR001766
            InterPro:IPR008984 InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006
            PROSITE:PS50039 SMART:SM00240 SMART:SM00339 GO:GO:0043565
            EMBL:BN001306 Gene3D:1.10.10.10 InterPro:IPR011991
            Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0005667 GO:GO:0003705
            EMBL:AACD01000051 GO:GO:0000790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0051090 eggNOG:COG5025 OrthoDB:EOG4R7ZKG RefSeq:XP_660458.1
            ProteinModelPortal:Q5B9C6 SMR:Q5B9C6 EnsemblFungi:CADANIAT00010236
            GeneID:2873846 KEGG:ani:AN2854.2 HOGENOM:HOG000198105 OMA:MESTEEI
            Uniprot:Q5B9C6
        Length = 710

 Score = 201 (75.8 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 46/155 (29%), Positives = 83/155 (53%)

Query:    51 KPPFTYTELIEQAL--KEKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI QA+   E+ +LT++ IY WI +++ +Y  +   W+NS+RHNLS+N  F+
Sbjct:   336 KPPYSYATLIAQAIFSSEEEKLTLNNIYNWIMDKYAFYRHSQSGWQNSIRHNLSLNKAFQ 395

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTET 166
             K  + +   G G  W ++      +  +  WKK +L+   +S  PS        + +  +
Sbjct:   396 KVPRRTDEPGKGMKWQIA-----AEYREEYWKK-QLRKGAQSSAPSSPATKDPTRGTATS 449

Query:   167 PAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQE 201
                S+ +  +  P P+++ S +  P+ P E Y+ E
Sbjct:   450 GMESVFSAGKKSP-PVSSPSFSSFPVAPVEAYTPE 483


>UNIPROTKB|Q5B9C6 [details] [associations]
            symbol:AN2854.2 "Putative forkhead transcription factor
            (Eurofung)" species:227321 "Aspergillus nidulans FGSC A4"
            [GO:0000790 "nuclear chromatin" evidence=IBA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR000253 InterPro:IPR001766
            InterPro:IPR008984 InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006
            PROSITE:PS50039 SMART:SM00240 SMART:SM00339 GO:GO:0043565
            EMBL:BN001306 Gene3D:1.10.10.10 InterPro:IPR011991
            Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0005667 GO:GO:0003705
            EMBL:AACD01000051 GO:GO:0000790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0051090 eggNOG:COG5025 OrthoDB:EOG4R7ZKG RefSeq:XP_660458.1
            ProteinModelPortal:Q5B9C6 SMR:Q5B9C6 EnsemblFungi:CADANIAT00010236
            GeneID:2873846 KEGG:ani:AN2854.2 HOGENOM:HOG000198105 OMA:MESTEEI
            Uniprot:Q5B9C6
        Length = 710

 Score = 201 (75.8 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 46/155 (29%), Positives = 83/155 (53%)

Query:    51 KPPFTYTELIEQAL--KEKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI QA+   E+ +LT++ IY WI +++ +Y  +   W+NS+RHNLS+N  F+
Sbjct:   336 KPPYSYATLIAQAIFSSEEEKLTLNNIYNWIMDKYAFYRHSQSGWQNSIRHNLSLNKAFQ 395

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTET 166
             K  + +   G G  W ++      +  +  WKK +L+   +S  PS        + +  +
Sbjct:   396 KVPRRTDEPGKGMKWQIA-----AEYREEYWKK-QLRKGAQSSAPSSPATKDPTRGTATS 449

Query:   167 PAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQE 201
                S+ +  +  P P+++ S +  P+ P E Y+ E
Sbjct:   450 GMESVFSAGKKSP-PVSSPSFSSFPVAPVEAYTPE 483


>UNIPROTKB|P33206 [details] [associations]
            symbol:foxa4-b "Forkhead box protein A4-B" species:8355
            "Xenopus laevis" [GO:0003677 "DNA binding" evidence=NAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISS] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0045892 GO:GO:0007399 GO:GO:0030154
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 InterPro:IPR018533 Pfam:PF09354 HOVERGEN:HBG006621
            EMBL:S93559 EMBL:U65750 EMBL:BC082641 PIR:A42237
            RefSeq:NP_001081076.1 UniGene:Xl.1082 ProteinModelPortal:P33206
            SMR:P33206 GeneID:394368 KEGG:xla:394368 CTD:394368
            Xenbase:XB-GENE-6254437 Uniprot:P33206
        Length = 400

 Score = 196 (74.1 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 59/189 (31%), Positives = 91/189 (48%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAK---THRKPPFTYTELIE 61
             SL  M     G  +P  P  TS++     Q E E +  P   +   +H KPP++Y  LI 
Sbjct:    72 SLGSMTQGMVGSLAP--PPSTSAYPLGYCQGESEFQRDPRTYRRNYSHAKPPYSYISLIT 129

Query:    62 QALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GA 117
              A+++     +T++ IYQWI + FPYY QN  RW+NS+RH+LS N  F K  ++ +  G 
Sbjct:   130 MAIQQAPNKMMTLNEIYQWIVDLFPYYRQNQQRWQNSIRHSLSFNDCFIKVPRSPEKPGK 189

Query:   118 GHLWNL--SDMEPVEDAS----KSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSM 171
             G  W L        E+      +  +K  R K+     + ++ GD+ +G +  ETP    
Sbjct:   190 GSYWTLHPESGNMFENGCYLRRQKRFKCERSKSGEGERKGNKPGDE-TGGSLKETPVSFD 248

Query:   172 ETMPQPQPQ 180
             +      PQ
Sbjct:   249 DCSSSRSPQ 257


>UNIPROTKB|Q12952 [details] [associations]
            symbol:FOXL1 "Forkhead box protein L1" species:9606 "Homo
            sapiens" [GO:0007507 "heart development" evidence=IMP] [GO:0008301
            "DNA binding, bending" evidence=IBA;NAS] [GO:0007275 "multicellular
            organismal development" evidence=NAS] [GO:0003690 "double-stranded
            DNA binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0007420 "brain development" evidence=IBA]
            [GO:0007495 "visceral mesoderm-endoderm interaction involved in
            midgut development" evidence=ISS;IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0009790 "embryo development"
            evidence=IBA] [GO:0009887 "organ morphogenesis" evidence=ISS;IBA]
            [GO:0030111 "regulation of Wnt receptor signaling pathway"
            evidence=ISS;IBA] [GO:0030166 "proteoglycan biosynthetic process"
            evidence=ISS;IBA] [GO:0035136 "forelimb morphogenesis"
            evidence=IBA] [GO:0043010 "camera-type eye development"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0051216
            "cartilage development" evidence=IBA] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IC] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISS] [GO:0003677
            "DNA binding" evidence=IDA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0007420 GO:GO:0007507
            GO:GO:0030111 GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0043010
            GO:GO:0009790 GO:GO:0009887 GO:GO:0003690 GO:GO:0051216
            GO:GO:0008134 GO:GO:0007389 GO:GO:0035136 GO:GO:0051090
            GO:GO:0030166 eggNOG:COG5025 OrthoDB:EOG4MCX19 EMBL:AC009108
            EMBL:AF315075 EMBL:BC117226 EMBL:U13225 IPI:IPI00030343 PIR:S51630
            RefSeq:NP_005241.1 UniGene:Hs.533830 ProteinModelPortal:Q12952
            SMR:Q12952 STRING:Q12952 DMDM:13638268 PRIDE:Q12952
            Ensembl:ENST00000320241 GeneID:2300 KEGG:hsa:2300 UCSC:uc002fjr.3
            CTD:2300 GeneCards:GC16P086612 HGNC:HGNC:3817 MIM:603252
            neXtProt:NX_Q12952 PharmGKB:PA28234 HOGENOM:HOG000112632
            HOVERGEN:HBG051650 InParanoid:Q12952 KO:K09405 OMA:PFLSYFP
            PhylomeDB:Q12952 GenomeRNAi:2300 NextBio:9337 Bgee:Q12952
            CleanEx:HS_FOXL1 Genevestigator:Q12952 GermOnline:ENSG00000176678
            GO:GO:0007495 Uniprot:Q12952
        Length = 345

 Score = 194 (73.4 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 39/102 (38%), Positives = 64/102 (62%)

Query:    46 AKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSI 103
             A+T +KPP++Y  LI  A+++  + ++T++GIYQ+I +RFP+Y+ N   W+NS+RHNLS+
Sbjct:    44 AETPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSL 103

Query:   104 NPHFRK--GVKASQGAGHLWNLSDMEPVEDASKSNWKKNRLK 143
             N  F K    K   G G  W L D   ++     N+++ + K
Sbjct:   104 NDCFVKVPREKGRPGKGSYWTL-DPRCLDMFENGNYRRRKRK 144


>RGD|1310041 [details] [associations]
            symbol:Foxl2 "forkhead box L2" species:10116 "Rattus norvegicus"
            [GO:0001541 "ovarian follicle development" evidence=ISO;IBA]
            [GO:0002074 "extraocular skeletal muscle development"
            evidence=ISO;IBA] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0003677 "DNA binding" evidence=ISO] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISO] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005667 "transcription
            factor complex" evidence=IBA] [GO:0006309 "apoptotic DNA
            fragmentation" evidence=ISO;IBA] [GO:0006917 "induction of
            apoptosis" evidence=ISO;IBA] [GO:0007389 "pattern specification
            process" evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0019101
            "female somatic sex determination" evidence=ISO;IBA] [GO:0030331
            "estrogen receptor binding" evidence=ISO;IBA] [GO:0031624
            "ubiquitin conjugating enzyme binding" evidence=ISO;IBA]
            [GO:0042703 "menstruation" evidence=ISO;IBA] [GO:0043028
            "cysteine-type endopeptidase regulator activity involved in
            apoptotic process" evidence=ISO;IBA] [GO:0043065 "positive
            regulation of apoptotic process" evidence=ISO] [GO:0043280
            "positive regulation of cysteine-type endopeptidase activity
            involved in apoptotic process" evidence=ISO;IBA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA;ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;IBA] [GO:0048048 "embryonic
            eye morphogenesis" evidence=ISO;IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0060014 "granulosa cell differentiation"
            evidence=IEA;ISO] [GO:0060026 "convergent extension" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            RGD:1310041 GO:GO:0045892 GO:GO:0006917 GO:GO:0043565 GO:GO:0045944
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0043280 GO:GO:0001541
            GO:GO:0006309 GO:GO:0008134 GO:GO:0048048 GO:GO:0007389
            GO:GO:0060026 GO:GO:0030331 GO:GO:0051090 GO:GO:0002074
            GO:GO:0060014 GO:GO:0019101 GeneTree:ENSGT00700000104135 KO:K09405
            CTD:668 OMA:QPAELSM GO:GO:0043028 GO:GO:0031624 GO:GO:0042703
            OrthoDB:EOG4B5P7G IPI:IPI00212053 RefSeq:XP_003750619.1
            RefSeq:XP_003754496.1 Ensembl:ENSRNOT00000023091 GeneID:367152
            KEGG:rno:367152 UCSC:RGD:1310041 NextBio:690759 Uniprot:D4A0S1
        Length = 374

 Score = 191 (72.3 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 42/105 (40%), Positives = 63/105 (60%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P      +KPP++Y  LI  A++E  + +LT+SGIYQ+I  +FP+Y +N   W+NS+RHN
Sbjct:    42 PEKPDPAQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHN 101

Query:   101 LSINPHFRKGVKASQGA--GHLWNLSDMEPV-EDA-SKSNWKKNR 141
             LS+N  F K  +   G   G+ W L   +P  ED   K N+++ R
Sbjct:   102 LSLNECFIKVPREGGGERKGNYWTL---DPACEDMFEKGNYRRRR 143

 Score = 40 (19.1 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query:   160 GQNSTETPAPSMETMPQPQPQPLNTMSLAHDP---LQPFEVYSQESKT 204
             GQ S  +PA +    P P   P    + A  P   +     +  +SKT
Sbjct:   318 GQLSPASPATAAPPAPAPTSAPGLQFACARQPELAMMHCSYWDHDSKT 365


>MGI|MGI:1349428 [details] [associations]
            symbol:Foxl2 "forkhead box L2" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0001541 "ovarian follicle
            development" evidence=ISO;IMP] [GO:0002074 "extraocular skeletal
            muscle development" evidence=ISO;IBA] [GO:0003677 "DNA binding"
            evidence=ISO;IDA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IDA;TAS] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0006309 "apoptotic DNA fragmentation" evidence=ISO;IBA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=TAS] [GO:0006917 "induction of apoptosis" evidence=IDA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0019101
            "female somatic sex determination" evidence=IMP] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0030331 "estrogen receptor
            binding" evidence=IPI] [GO:0031624 "ubiquitin conjugating enzyme
            binding" evidence=ISO;IBA] [GO:0042703 "menstruation"
            evidence=ISO;IBA] [GO:0043028 "cysteine-type endopeptidase
            regulator activity involved in apoptotic process" evidence=ISO;IBA]
            [GO:0043065 "positive regulation of apoptotic process"
            evidence=ISO] [GO:0043280 "positive regulation of cysteine-type
            endopeptidase activity involved in apoptotic process"
            evidence=ISO;IBA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0048048 "embryonic eye morphogenesis" evidence=IMP] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0060014 "granulosa cell
            differentiation" evidence=IMP] [GO:0060026 "convergent extension"
            evidence=IBA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 MGI:MGI:1349428 GO:GO:0006917 GO:GO:0043565
            GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0000122 GO:GO:0008301 GO:GO:0003690
            GO:GO:0043280 GO:GO:0001541 GO:GO:0006309 GO:GO:0008134
            GO:GO:0048048 GO:GO:0007389 GO:GO:0060026 GO:GO:0051090
            GO:GO:0002074 GO:GO:0060014 eggNOG:COG5025 GO:GO:0019101 KO:K09405
            CTD:668 HOGENOM:HOG000218632 HOVERGEN:HBG051651 OMA:QPAELSM
            GO:GO:0043028 GO:GO:0031624 GO:GO:0042703 EMBL:AF522275
            EMBL:AF060873 IPI:IPI00230400 RefSeq:NP_036150.1 UniGene:Mm.151239
            ProteinModelPortal:O88470 SMR:O88470 IntAct:O88470 STRING:O88470
            PhosphoSite:O88470 PRIDE:O88470 Ensembl:ENSMUST00000051312
            GeneID:26927 KEGG:mmu:26927 InParanoid:O88470 OrthoDB:EOG4B5P7G
            NextBio:304821 Bgee:O88470 CleanEx:MM_FOXL2 Genevestigator:O88470
            GermOnline:ENSMUSG00000050397 Uniprot:O88470
        Length = 375

 Score = 191 (72.3 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 42/105 (40%), Positives = 63/105 (60%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P      +KPP++Y  LI  A++E  + +LT+SGIYQ+I  +FP+Y +N   W+NS+RHN
Sbjct:    42 PEKPDPAQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHN 101

Query:   101 LSINPHFRKGVKASQGA--GHLWNLSDMEPV-EDA-SKSNWKKNR 141
             LS+N  F K  +   G   G+ W L   +P  ED   K N+++ R
Sbjct:   102 LSLNECFIKVPREGGGERKGNYWTL---DPACEDMFEKGNYRRRR 143

 Score = 40 (19.1 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query:   160 GQNSTETPAPSMETMPQPQPQPLNTMSLAHDP---LQPFEVYSQESKT 204
             GQ S  +PA +    P P   P    + A  P   +     +  +SKT
Sbjct:   319 GQLSPASPATAAPPAPAPTSAPGLQFACARQPELAMMHCSYWDHDSKT 366

 Score = 37 (18.1 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
 Identities = 7/26 (26%), Positives = 9/26 (34%)

Query:   156 DDYSGQNSTETPAPSMETMPQPQPQP 181
             + Y+G        P     P P P P
Sbjct:   268 NSYNGLGGPPAAPPPPPPPPHPHPHP 293


>UNIPROTKB|P58012 [details] [associations]
            symbol:FOXL2 "Forkhead box protein L2" species:9606 "Homo
            sapiens" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0060014 "granulosa cell differentiation" evidence=IEA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0006917 "induction
            of apoptosis" evidence=IBA] [GO:0007389 "pattern specification
            process" evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0019101 "female somatic sex determination" evidence=IBA]
            [GO:0030331 "estrogen receptor binding" evidence=IBA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IBA] [GO:0048048 "embryonic eye morphogenesis"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0060026
            "convergent extension" evidence=IBA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=ISS;NAS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
            binding" evidence=IDA;TAS] [GO:0042703 "menstruation" evidence=IMP]
            [GO:0030154 "cell differentiation" evidence=NAS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0001541 "ovarian follicle development"
            evidence=ISS;IMP] [GO:0006309 "apoptotic DNA fragmentation"
            evidence=IMP] [GO:0043028 "cysteine-type endopeptidase regulator
            activity involved in apoptotic process" evidence=IMP] [GO:0043065
            "positive regulation of apoptotic process" evidence=IMP]
            [GO:0043280 "positive regulation of cysteine-type endopeptidase
            activity involved in apoptotic process" evidence=IMP] [GO:0002074
            "extraocular skeletal muscle development" evidence=IMP] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0031624 "ubiquitin conjugating enzyme binding" evidence=IPI]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IDA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0045892 GO:GO:0030154 GO:GO:0006917
            GO:GO:0043565 GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0003690
            GO:GO:0043280 GO:GO:0001541 GO:GO:0006309 GO:GO:0008134
            GO:GO:0048048 GO:GO:0007389 GO:GO:0060026 GO:GO:0030331
            GO:GO:0051090 Orphanet:619 GO:GO:0002074 GO:GO:0060014
            eggNOG:COG5025 GO:GO:0019101 KO:K09405 CTD:668 HOVERGEN:HBG051651
            OMA:QPAELSM GO:GO:0043028 GO:GO:0042703 EMBL:AF301906 EMBL:DQ016609
            EMBL:BC062549 IPI:IPI00010550 RefSeq:NP_075555.1 UniGene:Hs.289292
            ProteinModelPortal:P58012 SMR:P58012 IntAct:P58012 STRING:P58012
            PhosphoSite:P58012 DMDM:13626838 PaxDb:P58012 PRIDE:P58012
            Ensembl:ENST00000330315 GeneID:668 KEGG:hsa:668 UCSC:uc003esw.3
            GeneCards:GC03M138663 HGNC:HGNC:1092 MIM:110100 MIM:605597
            MIM:608996 neXtProt:NX_P58012 Orphanet:126 Orphanet:261559
            PharmGKB:PA28235 InParanoid:P58012 GenomeRNAi:668 NextBio:2732
            ArrayExpress:P58012 Bgee:P58012 CleanEx:HS_FOXL2
            Genevestigator:P58012 GermOnline:ENSG00000183770 Uniprot:P58012
        Length = 376

 Score = 191 (72.3 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
 Identities = 42/105 (40%), Positives = 63/105 (60%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P      +KPP++Y  LI  A++E  + +LT+SGIYQ+I  +FP+Y +N   W+NS+RHN
Sbjct:    46 PEKPDPAQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHN 105

Query:   101 LSINPHFRKGVKASQGA--GHLWNLSDMEPV-EDA-SKSNWKKNR 141
             LS+N  F K  +   G   G+ W L   +P  ED   K N+++ R
Sbjct:   106 LSLNECFIKVPREGGGERKGNYWTL---DPACEDMFEKGNYRRRR 147

 Score = 40 (19.1 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query:   160 GQNSTETPAPSMETMPQPQPQPLNTMSLAHDP---LQPFEVYSQESKT 204
             GQ S  +PA +    P P   P    + A  P   +     +  +SKT
Sbjct:   320 GQLSPASPATAAPPAPAPTSAPGLQFACARQPELAMMHCSYWDHDSKT 367


>UNIPROTKB|Q91765 [details] [associations]
            symbol:foxa2-a "Forkhead box protein A2-A" species:8355
            "Xenopus laevis" [GO:0001707 "mesoderm formation" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IC;ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IDA]
            InterPro:IPR001766 InterPro:IPR013638 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0045893 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0001707 HSSP:Q99958
            KO:K08035 InterPro:IPR018533 Pfam:PF09354 HOVERGEN:HBG006621
            CTD:3170 EMBL:L25637 PIR:I51436 RefSeq:NP_001165629.1
            UniGene:Xl.40286 ProteinModelPortal:Q91765 SMR:Q91765
            GeneID:100127318 KEGG:xla:100127318 Xenbase:XB-GENE-865381
            Uniprot:Q91765
        Length = 434

 Score = 196 (74.1 bits), Expect = 4.1e-13, P = 4.1e-13
 Identities = 45/126 (35%), Positives = 64/126 (50%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPS---HAKTHRKPPFTYTELIE 61
             S+ PM  +     +       +S  P   QS +     P     + TH KPP++Y  LI 
Sbjct:   100 SMIPMSAQTTAMNALAPYTNINSMSPIYGQSNINRSRDPKTYRRSYTHAKPPYSYISLIT 159

Query:    62 QALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GA 117
              A+++     LT+S IYQWI + FP+Y QN  RW+NS+RH+LS N  F K  ++    G 
Sbjct:   160 MAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGK 219

Query:   118 GHLWNL 123
             G  W L
Sbjct:   220 GSFWTL 225


>UNIPROTKB|E1BK17 [details] [associations]
            symbol:FOXJ3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
            DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GeneTree:ENSGT00700000104094
            OMA:MSQQHMM EMBL:DAAA02009082 EMBL:DAAA02009083 IPI:IPI00924244
            Ensembl:ENSBTAT00000060940 Uniprot:E1BK17
        Length = 610

 Score = 197 (74.4 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
 Identities = 45/114 (39%), Positives = 62/114 (54%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    K ++T+S IYQWI + FPYY +    WKNS+RHNLS+N  F 
Sbjct:    63 KPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFL 122

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSG 160
             K  ++    G G  W + D  P EDA  +  KK R ++   +  P     D  G
Sbjct:   123 KVPRSKDDPGKGSYWAI-DTNPKEDALPTRPKK-RARSVERASTPYSIDSDSLG 174

 Score = 41 (19.5 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query:   155 GDDYSGQNSTETPA---PSMETMPQPQPQPLNTMSLAHDPLQP 194
             G + +G NS    +   P M T P P P       L   P +P
Sbjct:   341 GLNTTGSNSVAQVSLSHPQMHTQPSPHPSH-RPHGLPQHPQRP 382


>ZFIN|ZDB-GENE-990415-76 [details] [associations]
            symbol:foxa "forkhead box A sequence" species:7955
            "Danio rerio" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0019904 "protein domain specific binding" evidence=IBA]
            [GO:0060441 "epithelial tube branching involved in lung
            morphogenesis" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0009790
            "embryo development" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0010817 "regulation of
            hormone levels" evidence=IBA] [GO:0003690 "double-stranded DNA
            binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0048665 "neuron fate specification"
            evidence=IBA] [GO:0045666 "positive regulation of neuron
            differentiation" evidence=IBA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0042593 "glucose homeostasis" evidence=IBA] [GO:0060487 "lung
            epithelial cell differentiation" evidence=IBA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-990415-76 GO:GO:0019904 GO:GO:0043565 GO:GO:0045944
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0042593 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0009790 GO:GO:0003690
            GO:GO:0045666 GO:GO:0008134 GO:GO:0007389 GO:GO:0060487
            GO:GO:0048665 GO:GO:0051090 GO:GO:0010817 GO:GO:0060441
            eggNOG:COG5025 HSSP:Q99958 HOGENOM:HOG000231817 CTD:30539
            EMBL:AF052247 IPI:IPI00631514 RefSeq:NP_571357.1 UniGene:Dr.75815
            ProteinModelPortal:O73780 SMR:O73780 STRING:O73780 GeneID:30539
            KEGG:dre:30539 HOVERGEN:HBG108363 NextBio:20806920
            ArrayExpress:O73780 Uniprot:O73780
        Length = 343

 Score = 193 (73.0 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 46/120 (38%), Positives = 66/120 (55%)

Query:     8 PMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEK 67
             P  L PP    P    + +S +PE  + +   R   SHAK    PP++Y  LI  A+++ 
Sbjct:    51 PAGLLPPAN-PPKAYAEINSSEPEFQELKSVYRRTLSHAK----PPYSYISLICMAIQQS 105

Query:    68 --HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNL 123
                +LT++ IY WI + FPYY QN  RW+NS+RH+LS N  F +  ++  S G G  W L
Sbjct:   106 PAKRLTLNEIYDWIRQLFPYYRQNQQRWQNSIRHSLSFNDCFVRVPRSPDSPGKGSYWAL 165


>UNIPROTKB|Q28EM1 [details] [associations]
            symbol:foxj2 "Forkhead box protein J2" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0043565 "sequence-specific DNA
            binding" evidence=ISS] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISS] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0045893 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 eggNOG:COG5025 HSSP:Q01167
            GeneTree:ENSGT00700000104094 CTD:55810 HOGENOM:HOG000231184
            HOVERGEN:HBG051648 KO:K09403 OrthoDB:EOG473PR7 EMBL:CR848176
            EMBL:BC074713 RefSeq:NP_001005675.2 UniGene:Str.24177
            ProteinModelPortal:Q28EM1 SMR:Q28EM1 STRING:Q28EM1
            Ensembl:ENSXETT00000028887 GeneID:448174 KEGG:xtr:448174
            Xenbase:XB-GENE-483646 InParanoid:Q6GL06 OMA:INSAPAK Bgee:Q28EM1
            Uniprot:Q28EM1
        Length = 512

 Score = 197 (74.4 bits), Expect = 4.5e-13, P = 4.5e-13
 Identities = 67/226 (29%), Positives = 102/226 (45%)

Query:    46 AKTHR--KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNL 101
             A  HR  KPP++Y  LI+ A+      ++T+S IY+WI + FPYY      WKNS+RHNL
Sbjct:    52 AAAHRDGKPPYSYANLIQYAINSAPAKRMTLSEIYRWICDNFPYYRNAGVGWKNSIRHNL 111

Query:   102 SINPHFRKGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYS 159
             S+N  FRK  +     G G  W + D  P ED +    K+       + +    +  D  
Sbjct:   112 SLNKCFRKVPRPRDDPGKGSYWMI-DSCPKEDVALPRRKRPHPD---DEVSQDSFEQDV- 166

Query:   160 GQNSTETPAPSMETMPQP--QPQPLNTMSL--AHDPLQPFEVY-SQESKTFPYEECKDVL 214
               N +   + S  +MPQ   Q  P+N  S   ++    P ++     + T+   +C    
Sbjct:   167 --NKSPLRSASEVSMPQEGTQGHPMNNNSPLPSYSQANPTQMPPDSRAPTYNNNDCYKFS 224

Query:   215 YIQSNDNVLYTPHEDHKLYHNDNVLYTPGE--DHKLYQYEPSKNLI 258
             + +S    L        LYH+  +L   GE  D  LY    SK ++
Sbjct:   225 FSESTFPDLGCSFRS--LYHS--LLGKQGERGDKDLYNSMQSKQVL 266


>UNIPROTKB|Q6VFT7 [details] [associations]
            symbol:FOXL2 "Forkhead box protein L2" species:9913 "Bos
            taurus" [GO:0060014 "granulosa cell differentiation" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0001541 "ovarian follicle
            development" evidence=ISS;IBA] [GO:0048048 "embryonic eye
            morphogenesis" evidence=ISS;IBA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=ISS;IBA]
            [GO:0019101 "female somatic sex determination" evidence=ISS;IBA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
            [GO:0006917 "induction of apoptosis" evidence=ISS;IBA] [GO:0002074
            "extraocular skeletal muscle development" evidence=ISS;IBA]
            [GO:0043280 "positive regulation of cysteine-type endopeptidase
            activity involved in apoptotic process" evidence=ISS;IBA]
            [GO:0043065 "positive regulation of apoptotic process"
            evidence=ISS] [GO:0043028 "cysteine-type endopeptidase regulator
            activity involved in apoptotic process" evidence=ISS;IBA]
            [GO:0042703 "menstruation" evidence=ISS;IBA] [GO:0006309 "apoptotic
            DNA fragmentation" evidence=ISS;IBA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0060026 "convergent extension" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0031624 "ubiquitin conjugating enzyme
            binding" evidence=IBA] [GO:0030331 "estrogen receptor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0045892 GO:GO:0006917 GO:GO:0043565 GO:GO:0045944
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0043280 GO:GO:0001541
            GO:GO:0006309 GO:GO:0008134 GO:GO:0048048 GO:GO:0007389
            GO:GO:0060026 GO:GO:0030331 GO:GO:0051090 GO:GO:0002074
            GO:GO:0060014 eggNOG:COG5025 GO:GO:0019101
            GeneTree:ENSGT00700000104135 KO:K09405 EMBL:AY340970 EMBL:AY116404
            IPI:IPI00718456 RefSeq:NP_001026920.1 UniGene:Bt.13033
            ProteinModelPortal:Q6VFT7 SMR:Q6VFT7 Ensembl:ENSBTAT00000044307
            GeneID:281770 KEGG:bta:281770 CTD:668 HOGENOM:HOG000218632
            HOVERGEN:HBG051651 InParanoid:Q6VFT7 OMA:QPAELSM NextBio:20805686
            GO:GO:0043028 GO:GO:0031624 GO:GO:0042703 Uniprot:Q6VFT7
        Length = 377

 Score = 191 (72.3 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
 Identities = 42/105 (40%), Positives = 63/105 (60%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P      +KPP++Y  LI  A++E  + +LT+SGIYQ+I  +FP+Y +N   W+NS+RHN
Sbjct:    47 PEKPDPAQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHN 106

Query:   101 LSINPHFRKGVKASQGA--GHLWNLSDMEPV-EDA-SKSNWKKNR 141
             LS+N  F K  +   G   G+ W L   +P  ED   K N+++ R
Sbjct:   107 LSLNECFIKVPREGGGERKGNYWTL---DPACEDMFEKGNYRRRR 148

 Score = 39 (18.8 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query:   160 GQNSTETPAPSMETMPQPQPQPLNTMSLAHDP---LQPFEVYSQESKT 204
             GQ S  +PA +    P P   P    + A  P   +     +  +SKT
Sbjct:   321 GQLSPASPATAAPPAPAPTNAPGLQFACARQPELAMMHCSYWDHDSKT 368


>UNIPROTKB|Q6VFT6 [details] [associations]
            symbol:FOXL2 "Forkhead box protein L2" species:9823 "Sus
            scrofa" [GO:0019101 "female somatic sex determination"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0060014 "granulosa
            cell differentiation" evidence=ISS] [GO:0048048 "embryonic eye
            morphogenesis" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0006917 "induction of apoptosis" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
            [GO:0001541 "ovarian follicle development" evidence=ISS]
            [GO:0002074 "extraocular skeletal muscle development" evidence=ISS]
            [GO:0043280 "positive regulation of cysteine-type endopeptidase
            activity involved in apoptotic process" evidence=ISS] [GO:0043065
            "positive regulation of apoptotic process" evidence=ISS]
            [GO:0043028 "cysteine-type endopeptidase regulator activity
            involved in apoptotic process" evidence=ISS] [GO:0042703
            "menstruation" evidence=ISS] [GO:0006309 "apoptotic DNA
            fragmentation" evidence=ISS] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0031624 "ubiquitin conjugating enzyme binding" evidence=IEA]
            [GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0045892 GO:GO:0006917 GO:GO:0003677 GO:GO:0043565
            GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0043280 GO:GO:0001541 GO:GO:0006309
            GO:GO:0048048 GO:GO:0002074 GO:GO:0060014 GO:GO:0019101
            GeneTree:ENSGT00700000104135 KO:K09405 CTD:668 HOVERGEN:HBG051651
            OMA:QPAELSM GO:GO:0043028 GO:GO:0042703 EMBL:AY340971
            RefSeq:NP_001231594.1 RefSeq:XP_003483301.1 UniGene:Ssc.57156
            ProteinModelPortal:Q6VFT6 SMR:Q6VFT6 Ensembl:ENSSSCT00000030361
            GeneID:100622956 KEGG:ssc:100622956 Uniprot:Q6VFT6
        Length = 377

 Score = 191 (72.3 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
 Identities = 42/105 (40%), Positives = 63/105 (60%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P      +KPP++Y  LI  A++E  + +LT+SGIYQ+I  +FP+Y +N   W+NS+RHN
Sbjct:    47 PEKPDPAQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHN 106

Query:   101 LSINPHFRKGVKASQGA--GHLWNLSDMEPV-EDA-SKSNWKKNR 141
             LS+N  F K  +   G   G+ W L   +P  ED   K N+++ R
Sbjct:   107 LSLNECFIKVPREGGGERKGNYWTL---DPACEDMFEKGNYRRRR 148

 Score = 39 (18.8 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query:   160 GQNSTETPAPSMETMPQPQPQPLNTMSLAHDP---LQPFEVYSQESKT 204
             GQ S  +PA +    P P   P    + A  P   +     +  +SKT
Sbjct:   321 GQLSPASPATAAPPAPAPTNAPGLQFACARQPELAMMHCSYWDHDSKT 368


>UNIPROTKB|Q8MIP2 [details] [associations]
            symbol:FOXL2 "Forkhead box protein L2" species:9925 "Capra
            hircus" [GO:0001541 "ovarian follicle development"
            evidence=IEP;ISS] [GO:0002074 "extraocular skeletal muscle
            development" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0006309 "apoptotic DNA fragmentation" evidence=ISS] [GO:0006917
            "induction of apoptosis" evidence=ISS] [GO:0008210 "estrogen
            metabolic process" evidence=NAS] [GO:0019101 "female somatic sex
            determination" evidence=ISS] [GO:0042703 "menstruation"
            evidence=ISS] [GO:0043028 "cysteine-type endopeptidase regulator
            activity involved in apoptotic process" evidence=ISS] [GO:0043065
            "positive regulation of apoptotic process" evidence=ISS]
            [GO:0043280 "positive regulation of cysteine-type endopeptidase
            activity involved in apoptotic process" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0048048 "embryonic eye
            morphogenesis" evidence=ISS] [GO:0060014 "granulosa cell
            differentiation" evidence=ISS] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0006917 GO:GO:0003677 GO:GO:0043565 GO:GO:0045944
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0043280 GO:GO:0001541 GO:GO:0006309 GO:GO:0048048
            GO:GO:0002074 GO:GO:0060014 GO:GO:0008210 GO:GO:0019101
            HOVERGEN:HBG051651 GO:GO:0043028 GO:GO:0042703 EMBL:AY112725
            ProteinModelPortal:Q8MIP2 SMR:Q8MIP2 Uniprot:Q8MIP2
        Length = 377

 Score = 191 (72.3 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
 Identities = 42/105 (40%), Positives = 63/105 (60%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P      +KPP++Y  LI  A++E  + +LT+SGIYQ+I  +FP+Y +N   W+NS+RHN
Sbjct:    47 PEKPDPAQKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHN 106

Query:   101 LSINPHFRKGVKASQGA--GHLWNLSDMEPV-EDA-SKSNWKKNR 141
             LS+N  F K  +   G   G+ W L   +P  ED   K N+++ R
Sbjct:   107 LSLNECFIKVPREGGGERKGNYWTL---DPACEDMFEKGNYRRRR 148

 Score = 39 (18.8 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query:   160 GQNSTETPAPSMETMPQPQPQPLNTMSLAHDP---LQPFEVYSQESKT 204
             GQ S  +PA +    P P   P    + A  P   +     +  +SKT
Sbjct:   321 GQLSPASPATAAPPAPAPTNAPGLQFACARQPELAMMHCSYWDHDSKT 368


>MGI|MGI:2151057 [details] [associations]
            symbol:Foxn4 "forkhead box N4" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0007389 "pattern specification
            process" evidence=IBA] [GO:0008016 "regulation of heart
            contraction" evidence=IBA] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0030154 "cell
            differentiation" evidence=IMP] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IBA] [GO:0048513 "organ
            development" evidence=IBA] [GO:0048663 "neuron fate commitment"
            evidence=IGI] [GO:0048675 "axon extension" evidence=IBA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 MGI:MGI:2151057
            GO:GO:0045893 GO:GO:0043565 GO:GO:0008016 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0000122
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 GO:GO:0048663 GO:GO:0048513
            GO:GO:0048675 eggNOG:COG5025 GO:GO:0009888
            GeneTree:ENSGT00700000104051 KO:K09407 CTD:121643
            HOGENOM:HOG000232153 HOVERGEN:HBG051655 OMA:QQMASGR EMBL:AY039039
            EMBL:AF323488 EMBL:BC092242 EMBL:BC130222 IPI:IPI00170120
            RefSeq:NP_683737.2 UniGene:Mm.17709 ProteinModelPortal:Q8K3Q3
            SMR:Q8K3Q3 STRING:Q8K3Q3 PhosphoSite:Q8K3Q3 PRIDE:Q8K3Q3
            DNASU:116810 Ensembl:ENSMUST00000044790 GeneID:116810
            KEGG:mmu:116810 UCSC:uc008yzk.1 InParanoid:Q0VGP0 OrthoDB:EOG4D7Z5G
            NextBio:369138 Bgee:Q8K3Q3 CleanEx:MM_FOXN4 Genevestigator:Q8K3Q3
            GermOnline:ENSMUSG00000042002 Uniprot:Q8K3Q3
        Length = 521

 Score = 197 (74.4 bits), Expect = 4.7e-13, P = 4.7e-13
 Identities = 54/156 (34%), Positives = 74/156 (47%)

Query:    45 HAKTHRKPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLS 102
             H K + KP ++Y+ LI  ALK      L VS IY ++ E FPY+    D WKNSVRHNLS
Sbjct:   191 HPKHYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNSVRHNLS 250

Query:   103 INPHFRKGVKASQGA---GHLW--NLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDD 157
             +N  F K    S G+   G LW  NL+ ++ +E+     WK+  L     S+   E  D 
Sbjct:   251 LNKCFEKVETKSSGSSRKGCLWALNLARIDKMEE-EMHKWKRKDLAAIHRSMANPEELDK 309

Query:   158 YSGQNSTETPAPSMETMPQ-PQPQPLNTMSLAHDPL 192
                        P     P+ P      T+++AH  L
Sbjct:   310 LISDRPESCRRPGKRGEPKAPMLTHATTVAMAHSCL 345


>UNIPROTKB|Q9PT68 [details] [associations]
            symbol:foxd5-b "Forkhead box protein D5-B" species:8355
            "Xenopus laevis" [GO:0001840 "neural plate development"
            evidence=IEP] [GO:0003677 "DNA binding" evidence=NAS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=NAS] [GO:0005634 "nucleus" evidence=ISS;NAS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 EMBL:AF223426 GO:GO:0005634 GO:GO:0045892
            GO:GO:0007399 GO:GO:0030154 GO:GO:0003677 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0001840 KO:K09397 HSSP:Q63245 HOVERGEN:HBG051641
            EMBL:AJ242677 EMBL:AJ850136 EMBL:U04872 PIR:S50124
            RefSeq:NP_001081722.1 RefSeq:NP_001091898.1 UniGene:Xl.34925
            UniGene:Xl.644 ProteinModelPortal:Q9PT68 SMR:Q9PT68 GeneID:394316
            GeneID:398016 KEGG:xla:394316 KEGG:xla:398016 CTD:394316 CTD:398016
            Xenbase:XB-GENE-6252054 Uniprot:Q9PT68
        Length = 353

 Score = 193 (73.0 bits), Expect = 4.9e-13, P = 4.9e-13
 Identities = 66/207 (31%), Positives = 91/207 (43%)

Query:    14 PGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHR---KPPFTYTELIEQA-LKEKHQ 69
             P + S  E    SS + E   S+      P   K  R   KPP++Y  LI  A L+  H+
Sbjct:    58 PSKLSCTESESDSSGESEGGTSKDSPATSPG-GKAKRALVKPPYSYIALITMAILQSPHK 116

Query:    70 -LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNLSDM 126
              LT+SGI  +IS +FPYY      W+NS+RHNLS+N  F K  +   + G G+ W L   
Sbjct:   117 KLTLSGICDFISSKFPYYKDKFPAWQNSIRHNLSLNDCFIKIPREPGNPGKGNYWTL--- 173

Query:   127 EPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQP--QPQPLNT 184
             +P  +    N    R +   +  Q   + D     NS     P     PQP  Q  PL  
Sbjct:   174 DPASEDMFDNGSFLRRRKRFKRHQQEFFKDGLMMYNSLPYYRPYSALQPQPMLQQTPLAC 233

Query:   185 MSLAHDPLQPFEVYSQESKTFPYEECK 211
             M++   P    E  S  +   PY + K
Sbjct:   234 MAI---P----ETLSMPTNLTPYPDIK 253


>UNIPROTKB|Q6VFT5 [details] [associations]
            symbol:FOXL2 "Forkhead box protein L2" species:9986
            "Oryctolagus cuniculus" [GO:0001541 "ovarian follicle development"
            evidence=ISS] [GO:0002074 "extraocular skeletal muscle development"
            evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006309
            "apoptotic DNA fragmentation" evidence=ISS] [GO:0042703
            "menstruation" evidence=ISS] [GO:0043028 "cysteine-type
            endopeptidase regulator activity involved in apoptotic process"
            evidence=ISS] [GO:0043065 "positive regulation of apoptotic
            process" evidence=ISS] [GO:0043280 "positive regulation of
            cysteine-type endopeptidase activity involved in apoptotic process"
            evidence=ISS] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0005634 GO:GO:0045893
            GO:GO:0030154 GO:GO:0003677 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0043065
            GO:GO:0043280 GO:GO:0001541 GO:GO:0006309 GO:GO:0002074 CTD:668
            HOVERGEN:HBG051651 GO:GO:0043028 GO:GO:0042703 EMBL:AY340972
            RefSeq:NP_001164586.1 UniGene:Ocu.7555 ProteinModelPortal:Q6VFT5
            SMR:Q6VFT5 GeneID:100328926 Uniprot:Q6VFT5
        Length = 384

 Score = 190 (71.9 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
 Identities = 41/98 (41%), Positives = 62/98 (63%)

Query:    50 RKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  LI  A++E  + +LT+SGIYQ+I  +FP+Y +N   W+NS+RHNLS+N  F
Sbjct:    55 QKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECF 114

Query:   108 RKGVKASQGA--GHLWNLSDMEPV-EDA-SKSNWKKNR 141
              K  +   G   G+ W L   +P  ED   K N+++ R
Sbjct:   115 IKVPREGGGERKGNYWTL---DPACEDMFEKGNYRRRR 149

 Score = 40 (19.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query:   160 GQNSTETPAPSMETMPQPQPQPLNTMSLAHDP---LQPFEVYSQESKT 204
             GQ S  +PA +    P P   P    + A  P   +     +  +SKT
Sbjct:   328 GQLSPASPATAAPPAPAPTSAPGLQFACARQPELAMMHCSYWDHDSKT 375


>ZFIN|ZDB-GENE-040426-1181 [details] [associations]
            symbol:foxl1 "forkhead box L1" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA;IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0009887 "organ
            morphogenesis" evidence=IBA] [GO:0030166 "proteoglycan biosynthetic
            process" evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0030111 "regulation of
            Wnt receptor signaling pathway" evidence=IBA] [GO:0007495 "visceral
            mesoderm-endoderm interaction involved in midgut development"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0007420 "brain development"
            evidence=IMP] [GO:0043010 "camera-type eye development"
            evidence=IMP] [GO:0051216 "cartilage development" evidence=IMP]
            [GO:0035138 "pectoral fin morphogenesis" evidence=IMP] [GO:0005634
            "nucleus" evidence=IEA;IC] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 ZFIN:ZDB-GENE-040426-1181
            GO:GO:0045892 GO:GO:0007420 GO:GO:0030111 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0043010 GO:GO:0009790 GO:GO:0009887
            GO:GO:0003690 GO:GO:0051216 GO:GO:0008134 GO:GO:0007389
            GO:GO:0051090 GO:GO:0030166 HSSP:Q99958 CTD:2300
            HOGENOM:HOG000112632 HOVERGEN:HBG051650 KO:K09405 GO:GO:0007495
            GO:GO:0035138 EMBL:BC055156 IPI:IPI00495121 RefSeq:NP_957278.1
            UniGene:Dr.15390 ProteinModelPortal:Q7SY22 SMR:Q7SY22 STRING:Q7SY22
            GeneID:393959 KEGG:dre:393959 InParanoid:Q7SY22 NextBio:20814930
            ArrayExpress:Q7SY22 Bgee:Q7SY22 Uniprot:Q7SY22
        Length = 363

 Score = 193 (73.0 bits), Expect = 5.4e-13, P = 5.4e-13
 Identities = 40/98 (40%), Positives = 59/98 (60%)

Query:    50 RKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  LI  A+K     + T+SGIYQ+I +RFPYY+ N   W+NS+RHNLS+N  F
Sbjct:    51 QKPPYSYIALIAMAIKNAPDKRATLSGIYQFIMDRFPYYHDNKQGWQNSIRHNLSLNDCF 110

Query:   108 RK--GVKASQGAGHLWNLSDMEPVEDASKSNWKKNRLK 143
              K    K   G G  W L D + ++     N+++ + K
Sbjct:   111 IKVPREKGRPGKGSYWTL-DTKCLDMFENGNYRRRKRK 147


>SGD|S000000661 [details] [associations]
            symbol:HCM1 "Forkhead transcription factor" species:4932
            "Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IEA;IDA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0051300 "spindle pole body
            organization" evidence=IGI] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA;IMP;IDA] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0051090 "regulation of sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0090418
            "positive regulation of transcription involved in S-phase of
            mitotic cell cycle" evidence=IMP] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0034599 "cellular response to oxidative stress" evidence=IMP]
            [GO:0007005 "mitochondrion organization" evidence=IMP] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 SGD:S000000661 GO:GO:0005737
            GO:GO:0034599 GO:GO:0043565 GO:GO:0045944 EMBL:X59720 EMBL:BK006937
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000790 GO:GO:0003690 GO:GO:0007005 GO:GO:0008134
            GO:GO:0051090 GO:GO:0051300 eggNOG:COG5025
            GeneTree:ENSGT00700000104094 EMBL:L08252 PIR:S22262
            RefSeq:NP_009991.2 ProteinModelPortal:P25364 SMR:P25364
            DIP:DIP-4993N IntAct:P25364 MINT:MINT-531907 STRING:P25364
            PaxDb:P25364 EnsemblFungi:YCR065W GeneID:850429 KEGG:sce:YCR065W
            HOGENOM:HOG000142335 KO:K09413 OMA:CLAILQS OrthoDB:EOG4XKZH6
            NextBio:966009 Genevestigator:P25364 GermOnline:YCR065W
            GO:GO:0090418 Uniprot:P25364
        Length = 564

 Score = 197 (74.4 bits), Expect = 5.5e-13, P = 5.5e-13
 Identities = 36/76 (47%), Positives = 48/76 (63%)

Query:    50 RKPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  LI  A+ +  +  LT+S IY WI   FPYY Q D  W+NS+RHNLS+N  F
Sbjct:   108 KKPPYSYATLICLAILQSQEGKLTLSQIYHWIHVHFPYYKQKDASWQNSIRHNLSLNDAF 167

Query:   108 RKGVKASQGAGHLWNL 123
              K  K+  G GH W +
Sbjct:   168 IKTEKSCDGKGHFWEV 183


>UNIPROTKB|E2R0F1 [details] [associations]
            symbol:FOXJ3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00700000104094 OMA:MSQQHMM EMBL:AAEX03009529
            EMBL:AAEX03009528 ProteinModelPortal:E2R0F1
            Ensembl:ENSCAFT00000004039 Uniprot:E2R0F1
        Length = 622

 Score = 197 (74.4 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
 Identities = 45/114 (39%), Positives = 62/114 (54%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    K ++T+S IYQWI + FPYY +    WKNS+RHNLS+N  F 
Sbjct:    78 KPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFL 137

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSG 160
             K  ++    G G  W + D  P EDA  +  KK R ++   +  P     D  G
Sbjct:   138 KVPRSKDDPGKGSYWAI-DTNPKEDALPTRPKK-RARSVERASTPYSIDSDSLG 189

 Score = 40 (19.1 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
 Identities = 15/53 (28%), Positives = 18/53 (33%)

Query:   159 SGQNST---ETPAPSMETMPQPQP--QPLNTMSLAHDPLQPFEVYSQESKTFP 206
             +G NS      P   M T P P P  +P         P  P     Q S+  P
Sbjct:   360 TGSNSVAQVSLPHSQMHTQPSPHPSHRPHGLPQHPQRPQHPASHPQQHSQLQP 412


>UNIPROTKB|F1NNW9 [details] [associations]
            symbol:F1NNW9 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GeneTree:ENSGT00700000104094
            OMA:FATGCES EMBL:AADN02023892 IPI:IPI00818635
            Ensembl:ENSGALT00000041045 Uniprot:F1NNW9
        Length = 152

 Score = 175 (66.7 bits), Expect = 5.9e-13, P = 5.9e-13
 Identities = 42/149 (28%), Positives = 76/149 (51%)

Query:     3 YASLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRK---PPFTYTEL 59
             Y   +P  +  P   +P   C     +   S +    R    ++   +K   P ++Y  L
Sbjct:     1 YRRAQPGAMGHPNSAAPARLCSPIGGESSKSSNTPPPRPPSQNSDEEKKFTRPAYSYIAL 60

Query:    60 IEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKAS--- 114
             I  A+++   +++T+SGIY +I ++FPYY  N   W+NS+RHNLS+N  F K  +     
Sbjct:    61 IAMAIQQSPSNKVTLSGIYDFIMKKFPYYRSNQRAWQNSIRHNLSLNSCFVKVPRTEGNE 120

Query:   115 QGAGHLWNLSD-MEPVEDASKS-NWKKNR 141
             +G G+ W+ +   E + D  ++ N+++ R
Sbjct:   121 KGKGNYWSFATGCESMLDLFENGNYRRRR 149


>ZFIN|ZDB-GENE-031126-3 [details] [associations]
            symbol:foxi3a "forkhead box I3a" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0005667 "transcription factor
            complex" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0003690 "double-stranded
            DNA binding" evidence=IBA] [GO:0043049 "otic placode formation"
            evidence=IBA] [GO:0009913 "epidermal cell differentiation"
            evidence=IMP] [GO:0009957 "epidermal cell fate specification"
            evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0030104 "water homeostasis"
            evidence=IMP] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 ZFIN:ZDB-GENE-031126-3 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0008134 GO:GO:0007389
            GO:GO:0030104 GO:GO:0051090 GO:GO:0043049 GO:GO:0009957 HSSP:Q99958
            HOVERGEN:HBG067944 EMBL:AY331583 IPI:IPI00845088 UniGene:Dr.29102
            ProteinModelPortal:Q7T1C1 SMR:Q7T1C1 STRING:Q7T1C1 PRIDE:Q7T1C1
            InParanoid:Q7T1C1 Bgee:Q7T1C1 Uniprot:Q7T1C1
        Length = 353

 Score = 192 (72.6 bits), Expect = 6.4e-13, P = 6.4e-13
 Identities = 47/136 (34%), Positives = 77/136 (56%)

Query:    51 KPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A+      ++T+S IYQ++++ FP+YN++   W+NS+RHNLS+N  F 
Sbjct:   116 RPPYSYSALIAMAIHGAPNRRVTLSQIYQYVADNFPFYNKSKASWQNSIRHNLSLNDCFM 175

Query:   109 KGVK--ASQGAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNST- 164
             K  +  +  G G+ W L  + E + D    N+++ R K   +S Q  E G  YSG +S  
Sbjct:   176 KVPRDDSDPGKGNYWTLDPNCEKMFD--NGNFRRKR-KRKSDS-QAEEEGKGYSGSDSAL 231

Query:   165 ---ETPAPSMETMPQP 177
                + P+ S E    P
Sbjct:   232 SSPKNPSDSSERGNSP 247


>MGI|MGI:1347469 [details] [associations]
            symbol:Foxl1 "forkhead box L1" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0003677 "DNA binding"
            evidence=ISO] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IDA;TAS] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] [GO:0007389 "pattern specification
            process" evidence=IBA] [GO:0007420 "brain development"
            evidence=IBA] [GO:0007495 "visceral mesoderm-endoderm interaction
            involved in midgut development" evidence=IMP] [GO:0007507 "heart
            development" evidence=ISO] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009887 "organ morphogenesis" evidence=IBA] [GO:0030111
            "regulation of Wnt receptor signaling pathway" evidence=IMP]
            [GO:0030166 "proteoglycan biosynthetic process" evidence=IMP]
            [GO:0035136 "forelimb morphogenesis" evidence=IBA] [GO:0043010
            "camera-type eye development" evidence=IBA] [GO:0043565
            "sequence-specific DNA binding" evidence=ISO] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0051216 "cartilage development"
            evidence=IBA] [GO:0061146 "Peyer's patch morphogenesis"
            evidence=IMP] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 MGI:MGI:1347469 GO:GO:0007420 GO:GO:0030111
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0000122 GO:GO:0008301 GO:GO:0043010
            GO:GO:0009790 GO:GO:0009887 GO:GO:0003690 GO:GO:0051216
            GO:GO:0008134 EMBL:CH466525 GO:GO:0007389 GO:GO:0035136
            GO:GO:0061146 GO:GO:0051090 GO:GO:0030166 CTD:2300
            HOVERGEN:HBG051650 KO:K09405 GO:GO:0007495 EMBL:X92498
            EMBL:BC137805 EMBL:BC137806 EMBL:X71944 IPI:IPI00138057 PIR:F47746
            RefSeq:NP_032050.2 UniGene:Mm.5111 ProteinModelPortal:Q64731
            IntAct:Q64731 PRIDE:Q64731 GeneID:14241 KEGG:mmu:14241
            NextBio:285543 CleanEx:MM_FOXL1 Genevestigator:Q64731
            Uniprot:Q64731
        Length = 336

 Score = 191 (72.3 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 38/105 (36%), Positives = 63/105 (60%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P   +  +KPP++Y  LI  A+++  + ++T++GIYQ+I +RFP+Y+ N   W+NS+RHN
Sbjct:    41 PGRVEPPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHN 100

Query:   101 LSINPHFRK--GVKASQGAGHLWNLSDMEPVEDASKSNWKKNRLK 143
             LS+N  F K    K   G G  W L D   ++     N+++ + K
Sbjct:   101 LSLNECFVKVPREKGRPGKGSYWTL-DPRCLDMFENGNYRRRKRK 144


>FB|FBgn0004895 [details] [associations]
            symbol:fd64A "forkhead domain 64A" species:7227 "Drosophila
            melanogaster" [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISS] [GO:0005634
            "nucleus" evidence=IC;NAS] [GO:0009790 "embryo development"
            evidence=NAS] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0007346 "regulation of mitotic cell cycle"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0048665 "neuron fate specification" evidence=IBA]
            [GO:0035058 "nonmotile primary cilium assembly" evidence=IBA]
            [GO:0002052 "positive regulation of neuroblast proliferation"
            evidence=IBA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IBA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IBA] [GO:0045787 "positive regulation of
            cell cycle" evidence=IBA] [GO:0009953 "dorsal/ventral pattern
            formation" evidence=IBA] [GO:0007380 "specification of segmental
            identity, head" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0016199 "axon midline choice point recognition"
            evidence=IBA] [GO:0009888 "tissue development" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0009792 GO:GO:0007346 EMBL:AE014296 GO:GO:0043565
            GO:GO:0045944 GO:GO:0016199 GO:GO:0045665 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0003690 GO:GO:0009953 GO:GO:0008134 GO:GO:0048665
            GO:GO:0045787 GO:GO:0002052 GO:GO:0051090 GO:GO:0035058
            eggNOG:COG5025 GO:GO:0007380 GO:GO:0009888 EMBL:M96441 PIR:B46178
            RefSeq:NP_001246609.1 RefSeq:NP_523912.1 UniGene:Dm.23970
            ProteinModelPortal:Q02360 SMR:Q02360 DIP:DIP-19169N IntAct:Q02360
            MINT:MINT-290862 STRING:Q02360 EnsemblMetazoa:FBtr0073192
            EnsemblMetazoa:FBtr0309789 GeneID:38471 KEGG:dme:Dmel_CG1132
            CTD:38471 FlyBase:FBgn0004895 GeneTree:ENSGT00690000101636
            InParanoid:Q02360 KO:K09411 OMA:PNYSDRI OrthoDB:EOG47D7XZ
            PhylomeDB:Q02360 GenomeRNAi:38471 NextBio:808831 Bgee:Q02360
            GermOnline:CG1132 Uniprot:Q02360
        Length = 365

 Score = 192 (72.6 bits), Expect = 7.3e-13, P = 7.3e-13
 Identities = 46/144 (31%), Positives = 77/144 (53%)

Query:    48 THR--KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSI 103
             +HR  KPPF+Y  LI  A+      +LT+SGIY++I ++FPYY +N   W+NS+RHNLS+
Sbjct:    86 SHRPEKPPFSYIALIAMAISSAPNQRLTLSGIYKFIMDKFPYYRENKQGWQNSIRHNLSL 145

Query:   104 N------PHFRKGVKA--SQGAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWG 155
             N      P  +  ++   S G G  W L D    +   + N+++ R +       P+ + 
Sbjct:   146 NDCFVKIPRDKNTIEDNDSAGKGSYWML-DSSASDMFEQGNYRRRRTRRQRHCGHPNRYE 204

Query:   156 DDYSGQNSTETPAPSMETMPQPQP 179
              + SG++S +  + + E     +P
Sbjct:   205 RE-SGKDSNDGNSSAAEIRSPSEP 227


>UNIPROTKB|B7ZAP5 [details] [associations]
            symbol:FOXA1 "Hepatocyte nuclear factor 3-alpha"
            species:9606 "Homo sapiens" [GO:0008134 "transcription factor
            binding" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0042445 "hormone metabolic process" evidence=IEA] [GO:0042593
            "glucose homeostasis" evidence=IEA] [GO:0043565 "sequence-specific
            DNA binding" evidence=IEA] [GO:0045666 "positive regulation of
            neuron differentiation" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0048665 "neuron fate specification" evidence=IEA]
            [GO:0060441 "epithelial tube branching involved in lung
            morphogenesis" evidence=IEA] [GO:0060487 "lung epithelial cell
            differentiation" evidence=IEA] [GO:0060528 "secretory columnal
            luminar epithelial cell differentiation involved in prostate
            glandular acinus development" evidence=IEA] [GO:0060738
            "epithelial-mesenchymal signaling involved in prostate gland
            development" evidence=IEA] [GO:0060740 "prostate gland epithelium
            morphogenesis" evidence=IEA] [GO:0060741 "prostate gland stromal
            morphogenesis" evidence=IEA] [GO:0060743 "epithelial cell
            maturation involved in prostate gland development" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR013638 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0043565 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0042593 GO:GO:0006338
            GO:GO:0003690 GO:GO:0045666 GO:GO:0042445 GO:GO:0060740
            GO:GO:0060487 GO:GO:0048665 GO:GO:0060441 GO:GO:0060741
            GO:GO:0060743 InterPro:IPR018533 Pfam:PF09354 EMBL:AL121790
            HGNC:HGNC:5021 HOVERGEN:HBG006621 ChiTaRS:FOXA1 GO:GO:0060738
            GO:GO:0060528 EMBL:AK316360 IPI:IPI00024387 SMR:B7ZAP5
            STRING:B7ZAP5 Ensembl:ENST00000540786 Uniprot:B7ZAP5
        Length = 439

 Score = 194 (73.4 bits), Expect = 7.3e-13, P = 7.3e-13
 Identities = 37/79 (46%), Positives = 49/79 (62%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY QN  RW+NS+RH+LS N  
Sbjct:   135 HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDC 194

Query:   107 FRKGVKASQ--GAGHLWNL 123
             F K  ++    G G  W L
Sbjct:   195 FVKVARSPDKPGKGSYWTL 213


>UNIPROTKB|Q1PA44 [details] [associations]
            symbol:FoxA "Uncharacterized protein" species:7668
            "Strongylocentrotus purpuratus" [GO:0003690 "double-stranded DNA
            binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0009888 "tissue
            development" evidence=IBA] [GO:0019904 "protein domain specific
            binding" evidence=IBA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0048513 "organ development" evidence=IBA] [GO:0048665 "neuron
            fate specification" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0019904 GO:GO:0043565 GO:GO:0045944 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0009790 GO:GO:0003690 GO:GO:0008134 GO:GO:0007389
            GO:GO:0048665 GO:GO:0051090 GO:GO:0048513 eggNOG:COG5025
            GO:GO:0009888 InterPro:IPR018533 Pfam:PF09354 HOGENOM:HOG000231817
            KO:K09387 EMBL:DQ459376 RefSeq:NP_001073010.1 UniGene:Spu.1709
            ProteinModelPortal:Q1PA44 SMR:Q1PA44 EnsemblMetazoa:SPU_006676tr
            GeneID:578584 KEGG:spu:578584 CTD:30539 OMA:ANSAMIS Uniprot:Q1PA44
        Length = 440

 Score = 194 (73.4 bits), Expect = 7.4e-13, P = 7.4e-13
 Identities = 61/192 (31%), Positives = 91/192 (47%)

Query:    48 THRKPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINP 105
             TH KPP++Y  LI  A+++  Q  +T+S IYQ+I + FP+Y QN  RW+NS+RH+LS N 
Sbjct:   141 THAKPPYSYISLITMAIQQSPQKMVTLSDIYQFIMDLFPFYRQNQQRWQNSIRHSLSFND 200

Query:   106 HFRKGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKT---YLESLQPSEWGDDYS 159
              F K  +     G G  W L  D   + +      ++ R K      + L     GDD  
Sbjct:   201 CFVKVPRTPDRPGKGSFWTLHPDAGNMFENGCYLRRQKRFKCPKKEAQRLAQKAAGDD-- 258

Query:   160 GQNSTETPAPSMETMPQPQPQPLNTMSLAHD---PLQPFEV-YSQESKTFPYEECKDVLY 215
             GQ   E   P+      P   P  T S++ D   P Q  ++ + Q+  T  +++    L+
Sbjct:   259 GQ-PIENGEPNTRDPSTPVSHPTPTDSVSSDGGLPNQNQQLEHPQQVPTPQHQQQGATLH 317

Query:   216 IQSNDNVLYTPH 227
                N   L  PH
Sbjct:   318 KMENHQ-LSPPH 328


>UNIPROTKB|Q66IG8 [details] [associations]
            symbol:foxj1.2 "Forkhead box protein J1.2" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0001947 "heart looping"
            evidence=IBA] [GO:0002635 "negative regulation of germinal center
            formation" evidence=IBA] [GO:0002897 "positive regulation of
            central B cell tolerance induction" evidence=IBA] [GO:0002924
            "negative regulation of humoral immune response mediated by
            circulating immunoglobulin" evidence=IBA] [GO:0003677 "DNA binding"
            evidence=NAS] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=NAS] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=ISS;NAS] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0019904 "protein domain specific binding"
            evidence=IBA] [GO:0030036 "actin cytoskeleton organization"
            evidence=IBA] [GO:0030324 "lung development" evidence=IBA]
            [GO:0030855 "epithelial cell differentiation" evidence=IBA]
            [GO:0032088 "negative regulation of NF-kappaB transcription factor
            activity" evidence=IBA] [GO:0032862 "activation of Rho GTPase
            activity" evidence=IBA] [GO:0033085 "negative regulation of T cell
            differentiation in thymus" evidence=IBA] [GO:0035089 "establishment
            of apical/basal cell polarity" evidence=IBA] [GO:0042130 "negative
            regulation of T cell proliferation" evidence=IBA] [GO:0042384
            "cilium assembly" evidence=IBA] [GO:0045409 "negative regulation of
            interleukin-6 biosynthetic process" evidence=IBA] [GO:0050869
            "negative regulation of B cell activation" evidence=IBA]
            [GO:0050900 "leukocyte migration" evidence=IBA] [GO:0060972
            "left/right pattern formation" evidence=IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0019904
            GO:GO:0042130 GO:GO:0030036 GO:GO:0030324 GO:GO:0050900
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0003690 GO:GO:0042384
            GO:GO:0001947 GO:GO:0032088 GO:GO:0008134 GO:GO:0060088
            GO:GO:0030855 GO:GO:0033085 GO:GO:0032862 eggNOG:COG5025
            GO:GO:0060972 GO:GO:0002924 HSSP:Q63245 HOGENOM:HOG000112631
            HOVERGEN:HBG056832 OrthoDB:EOG40CHH5 GO:GO:0035089 GO:GO:0050869
            GO:GO:0002635 GO:GO:0045409 GO:GO:0002897
            GeneTree:ENSGT00700000104094 CTD:734957 EMBL:BC081355
            RefSeq:NP_001008143.1 UniGene:Str.5772 ProteinModelPortal:Q66IG8
            SMR:Q66IG8 Ensembl:ENSXETT00000052832 GeneID:493505 KEGG:xtr:493505
            Xenbase:XB-GENE-919738 InParanoid:Q66IG8 Bgee:Q66IG8 Uniprot:Q66IG8
        Length = 371

 Score = 180 (68.4 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
 Identities = 39/98 (39%), Positives = 55/98 (56%)

Query:    30 PEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYN 87
             P PS S V++    ++A    KPP++Y  LI  A++   Q  LT+S IY WI++ F YY 
Sbjct:    90 PTPSPSPVQEVDYRTNANI--KPPYSYATLICMAMEASQQRKLTLSAIYSWITQNFCYYR 147

Query:    88 QNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL 123
               D  W+NS+RHNLS+N  F K  +     G G  W +
Sbjct:   148 HADPSWQNSIRHNLSLNKCFMKVPRGKDEPGKGGFWQM 185

 Score = 50 (22.7 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
 Identities = 28/94 (29%), Positives = 38/94 (40%)

Query:   128 PVEDASKSNWKKNRLKTYLESLQPSEWGDDY--SGQNSTETPAPSMETMPQPQPQPLNTM 185
             P +    SN+    L+T L S+    W  D   S  NST T    M+   Q  P   N  
Sbjct:   269 PEDPLQGSNFDDLDLQTALISMC---WEGDLAASNLNSTLTGTSGMDMNLQDPPMQDNHW 325

Query:   186 SLAHDPLQPFEVYSQESKTFP-YEEC---KDVLY 215
              L+ +  Q +E   +E      Y E    +DVLY
Sbjct:   326 YLSTEGQQTWEQVKEEPVVEQWYNETGFVEDVLY 359


>UNIPROTKB|E2QSA5 [details] [associations]
            symbol:FOXA1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0060743 "epithelial cell maturation involved
            in prostate gland development" evidence=IEA] [GO:0060741 "prostate
            gland stromal morphogenesis" evidence=IEA] [GO:0060740 "prostate
            gland epithelium morphogenesis" evidence=IEA] [GO:0060738
            "epithelial-mesenchymal signaling involved in prostate gland
            development" evidence=IEA] [GO:0060528 "secretory columnal luminar
            epithelial cell differentiation involved in prostate glandular
            acinus development" evidence=IEA] [GO:0060487 "lung epithelial cell
            differentiation" evidence=IEA] [GO:0060441 "epithelial tube
            branching involved in lung morphogenesis" evidence=IEA] [GO:0051091
            "positive regulation of sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0048665 "neuron fate
            specification" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045931 "positive regulation of mitotic cell cycle"
            evidence=IEA] [GO:0045666 "positive regulation of neuron
            differentiation" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0042593 "glucose
            homeostasis" evidence=IEA] [GO:0042445 "hormone metabolic process"
            evidence=IEA] [GO:0033148 "positive regulation of intracellular
            estrogen receptor signaling pathway" evidence=IEA] [GO:0032355
            "response to estradiol stimulus" evidence=IEA] [GO:0010719
            "negative regulation of epithelial to mesenchymal transition"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0019904 "protein domain specific binding" evidence=IEA]
            [GO:0008134 "transcription factor binding" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR013638 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0051091 GO:GO:0032355 GO:GO:0045931 GO:GO:0043565
            GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0042593 GO:GO:0006338 GO:GO:0044212 GO:GO:0045666
            GO:GO:0042445 GO:GO:0033148 GO:GO:0060740 GO:GO:0060487
            GO:GO:0048665 GO:GO:0060441 GO:GO:0010719 GO:GO:0060741
            GO:GO:0060743 InterPro:IPR018533 Pfam:PF09354 GO:GO:0060738
            GO:GO:0060528 Ensembl:ENSCAFT00000021805 Uniprot:E2QSA5
        Length = 452

 Score = 194 (73.4 bits), Expect = 7.9e-13, P = 7.9e-13
 Identities = 37/79 (46%), Positives = 49/79 (62%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY QN  RW+NS+RH+LS N  
Sbjct:   168 HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDC 227

Query:   107 FRKGVKASQ--GAGHLWNL 123
             F K  ++    G G  W L
Sbjct:   228 FVKVARSPDKPGKGSYWTL 246


>ZFIN|ZDB-GENE-050419-153 [details] [associations]
            symbol:foxf1 "forkhead box F1" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-050419-153 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 eggNOG:COG5025
            GeneTree:ENSGT00690000101636 EMBL:BX571798 EMBL:BC129194
            IPI:IPI00487605 RefSeq:NP_001073655.1 UniGene:Dr.89399
            ProteinModelPortal:A1L1S5 SMR:A1L1S5 STRING:A1L1S5
            Ensembl:ENSDART00000012374 GeneID:566407 KEGG:dre:566407 CTD:2294
            HOGENOM:HOG000060124 InParanoid:A1L1S5 KO:K09399 OMA:MTAEVQQ
            OrthoDB:EOG4BRWM4 NextBio:20888166 Bgee:A1L1S5 Uniprot:A1L1S5
        Length = 380

 Score = 192 (72.6 bits), Expect = 8.3e-13, P = 8.3e-13
 Identities = 49/156 (31%), Positives = 78/156 (50%)

Query:     4 ASLEPMELKPPGQFSPM--EPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIE 61
             A ++   ++ P   SPM  +P QT   +   S S  + +   +  +   KPP++Y  LI 
Sbjct:     3 AEVQQPSVQTPAHSSPMTEKPVQTPVMETSSSSSSTKAKKTNAGIRRPEKPPYSYIALIV 62

Query:    62 QALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGA 117
              A++     +LT+S IYQ++  RFP++  +   WKNSVRHNLS+N  F K  K     G 
Sbjct:    63 MAIQSSPTKRLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGK 122

Query:   118 GHLWNLSDMEPVEDASKSNWKKNR-LKTYLESLQPS 152
             GH W +           S  ++ R  +   ++L+PS
Sbjct:   123 GHYWTIDPASEFMFEEGSFRRRPRGFRRKCQALKPS 158


>RGD|2807 [details] [associations]
            symbol:Foxa1 "forkhead box A1" species:10116 "Rattus norvegicus"
          [GO:0000122 "negative regulation of transcription from RNA polymerase
          II promoter" evidence=ISO;IGI] [GO:0001077 "RNA polymerase II core
          promoter proximal region sequence-specific DNA binding transcription
          factor activity involved in positive regulation of transcription"
          evidence=IDA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003690
          "double-stranded DNA binding" evidence=IDA] [GO:0003700
          "sequence-specific DNA binding transcription factor activity"
          evidence=IEA;ISO;IDA] [GO:0003705 "RNA polymerase II distal enhancer
          sequence-specific DNA binding transcription factor activity"
          evidence=IBA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667
          "transcription factor complex" evidence=IBA] [GO:0006338 "chromatin
          remodeling" evidence=ISO] [GO:0007389 "pattern specification process"
          evidence=IBA] [GO:0008134 "transcription factor binding"
          evidence=IEA;IPI] [GO:0008301 "DNA binding, bending" evidence=IBA]
          [GO:0009790 "embryo development" evidence=IBA] [GO:0010468
          "regulation of gene expression" evidence=ISO] [GO:0010719 "negative
          regulation of epithelial to mesenchymal transition" evidence=ISO]
          [GO:0010817 "regulation of hormone levels" evidence=IBA] [GO:0016568
          "chromatin modification" evidence=IEA] [GO:0019904 "protein domain
          specific binding" evidence=IEA;IDA] [GO:0030324 "lung development"
          evidence=ISO] [GO:0032355 "response to estradiol stimulus"
          evidence=ISO] [GO:0033148 "positive regulation of intracellular
          estrogen receptor signaling pathway" evidence=ISO] [GO:0035239 "tube
          morphogenesis" evidence=ISO] [GO:0042445 "hormone metabolic process"
          evidence=ISO] [GO:0042593 "glucose homeostasis" evidence=ISO;IBA]
          [GO:0043565 "sequence-specific DNA binding" evidence=IEA;ISO;IDA]
          [GO:0044212 "transcription regulatory region DNA binding"
          evidence=ISO] [GO:0045666 "positive regulation of neuron
          differentiation" evidence=ISO;IBA] [GO:0045931 "positive regulation
          of mitotic cell cycle" evidence=ISO] [GO:0045944 "positive regulation
          of transcription from RNA polymerase II promoter" evidence=ISO;IDA]
          [GO:0048665 "neuron fate specification" evidence=ISO;IBA] [GO:0051090
          "regulation of sequence-specific DNA binding transcription factor
          activity" evidence=IBA] [GO:0051091 "positive regulation of
          sequence-specific DNA binding transcription factor activity"
          evidence=ISO] [GO:0060441 "epithelial tube branching involved in lung
          morphogenesis" evidence=ISO;IBA] [GO:0060487 "lung epithelial cell
          differentiation" evidence=ISO;IBA] [GO:0060528 "secretory columnal
          luminar epithelial cell differentiation involved in prostate
          glandular acinus development" evidence=ISO;IBA] [GO:0060738
          "epithelial-mesenchymal signaling involved in prostate gland
          development" evidence=ISO;IBA] [GO:0060740 "prostate gland epithelium
          morphogenesis" evidence=ISO;IBA] [GO:0060741 "prostate gland stromal
          morphogenesis" evidence=ISO;IBA] [GO:0060743 "epithelial cell
          maturation involved in prostate gland development" evidence=ISO;IBA]
          InterPro:IPR001766 InterPro:IPR013638 InterPro:IPR018122 Pfam:PF00250
          Pfam:PF08430 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
          PROSITE:PS50039 SMART:SM00339 RGD:2807 GO:GO:0019904 GO:GO:0043565
          Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0042593 GO:GO:0016568
          GO:GO:0005667 GO:GO:0003705 GO:GO:0001077 GO:GO:0000122 GO:GO:0008301
          GO:GO:0009790 GO:GO:0003690 GO:GO:0045666 GO:GO:0007389 GO:GO:0060740
          GO:GO:0060487 GO:GO:0048665 GO:GO:0051090 GO:GO:0010817 GO:GO:0060441
          GO:GO:0060741 eggNOG:COG5025 GO:GO:0060743 InterPro:IPR018533
          Pfam:PF09354 CTD:3169 HOGENOM:HOG000231817 HOVERGEN:HBG006621
          KO:K09387 GO:GO:0060738 GO:GO:0060528 EMBL:X55955 IPI:IPI00211811
          PIR:A36674 RefSeq:NP_036874.1 UniGene:Rn.10470
          ProteinModelPortal:P23512 SMR:P23512 STRING:P23512 PhosphoSite:P23512
          GeneID:25098 KEGG:rno:25098 UCSC:RGD:2807 NextBio:605405
          Genevestigator:P23512 GermOnline:ENSRNOG00000009284 Uniprot:P23512
        Length = 466

 Score = 194 (73.4 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 37/79 (46%), Positives = 49/79 (62%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY QN  RW+NS+RH+LS N  
Sbjct:   168 HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNAC 227

Query:   107 FRKGVKASQ--GAGHLWNL 123
             F K  ++    G G  W L
Sbjct:   228 FVKVARSPDKPGKGSYWTL 246


>UNIPROTKB|Q5WM45 [details] [associations]
            symbol:foxd5 "Forkhead box protein D5" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0001658 "branching involved in
            ureteric bud morphogenesis" evidence=IBA] [GO:0001755 "neural crest
            cell migration" evidence=IBA] [GO:0001822 "kidney development"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005634 "nucleus" evidence=ISS] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0007422 "peripheral
            nervous system development" evidence=IBA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0009790 "embryo development"
            evidence=IBA] [GO:0030318 "melanocyte differentiation"
            evidence=IBA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0048484 "enteric nervous system development" evidence=IBA]
            [GO:0048485 "sympathetic nervous system development" evidence=IBA]
            [GO:0048846 "axon extension involved in axon guidance"
            evidence=IBA] [GO:0048937 "lateral line nerve glial cell
            development" evidence=IBA] [GO:0050935 "iridophore differentiation"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0051216
            "cartilage development" evidence=IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0045892
            GO:GO:0001755 GO:GO:0043565 GO:GO:0045944 GO:GO:0007422
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0001822 GO:GO:0003690
            GO:GO:0051216 GO:GO:0008134 GO:GO:0007389 GO:GO:0001658
            GO:GO:0048485 GO:GO:0030318 GO:GO:0048484 GO:GO:0051090
            GO:GO:0048846 eggNOG:COG5025 KO:K09397 GO:GO:0048937 HSSP:Q63245
            HOVERGEN:HBG051641 OrthoDB:EOG45MN6S GO:GO:0050935
            HOGENOM:HOG000231285 EMBL:AJ850137 EMBL:CR762235
            RefSeq:NP_001016928.1 UniGene:Str.10716 ProteinModelPortal:Q5WM45
            SMR:Q5WM45 STRING:Q5WM45 GeneID:549682 KEGG:xtr:549682 CTD:549682
            Xenbase:XB-GENE-479247 InParanoid:Q5WM45 Uniprot:Q5WM45
        Length = 352

 Score = 191 (72.3 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 65/221 (29%), Positives = 95/221 (42%)

Query:     6 LEPM--ELKPPGQFSPMEPCQTSSHKPEPSQSE----VEDRCCPSHAKTHR---KPPFTY 56
             L+P   E+   G  SP +   T S      +SE     +    PS  K  R   KPP++Y
Sbjct:    43 LQPTHSEMGDSGILSPSKLSCTESESDSSGESEGGTSKDSPATPSGGKAKRALVKPPYSY 102

Query:    57 TELIEQA-LKEKHQ-LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK-- 112
               LI  A L+  H+ LT+SGI  +IS +FPYY      W+NS+RHNLS+N  F K  +  
Sbjct:   103 IALITMAILQSPHKKLTLSGICDFISSKFPYYKDKFPAWQNSIRHNLSLNDCFIKIPREP 162

Query:   113 ASQGAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSME 172
              + G G+ W L   +P  +    N    R +   +  Q   + D     N      P   
Sbjct:   163 GNPGKGNYWTL---DPASEDMFDNGSFLRRRKRFKRHQQEFFKDGLVMYNPLPYYRPYST 219

Query:   173 TMPQP--QPQPLNTMSLAHDPLQPFEV--YSQESKTFPYEE 209
               PQ   Q  P+  M++  +   P  +  Y    +  PY +
Sbjct:   220 IQPQQVLQQTPVACMAIPENLTMPTHLAPYPDIKRKVPYPD 260


>UNIPROTKB|F1SHK8 [details] [associations]
            symbol:FOXA1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0060743 "epithelial cell maturation involved in
            prostate gland development" evidence=IEA] [GO:0060741 "prostate
            gland stromal morphogenesis" evidence=IEA] [GO:0060740 "prostate
            gland epithelium morphogenesis" evidence=IEA] [GO:0060738
            "epithelial-mesenchymal signaling involved in prostate gland
            development" evidence=IEA] [GO:0060528 "secretory columnal luminar
            epithelial cell differentiation involved in prostate glandular
            acinus development" evidence=IEA] [GO:0060487 "lung epithelial cell
            differentiation" evidence=IEA] [GO:0060441 "epithelial tube
            branching involved in lung morphogenesis" evidence=IEA] [GO:0051091
            "positive regulation of sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0048665 "neuron fate
            specification" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045931 "positive regulation of mitotic cell cycle"
            evidence=IEA] [GO:0045666 "positive regulation of neuron
            differentiation" evidence=IEA] [GO:0044212 "transcription
            regulatory region DNA binding" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0042593 "glucose
            homeostasis" evidence=IEA] [GO:0042445 "hormone metabolic process"
            evidence=IEA] [GO:0033148 "positive regulation of intracellular
            estrogen receptor signaling pathway" evidence=IEA] [GO:0032355
            "response to estradiol stimulus" evidence=IEA] [GO:0010719
            "negative regulation of epithelial to mesenchymal transition"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003700 "sequence-specific
            DNA binding transcription factor activity" evidence=IEA]
            [GO:0019904 "protein domain specific binding" evidence=IEA]
            [GO:0008134 "transcription factor binding" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR013638 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0051091 GO:GO:0032355 GO:GO:0045931 GO:GO:0043565
            GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0042593 GO:GO:0006338 GO:GO:0044212 GO:GO:0045666
            GO:GO:0042445 GO:GO:0033148 GO:GO:0060740 GO:GO:0060487
            GO:GO:0048665 GO:GO:0060441 GO:GO:0010719 GO:GO:0060741
            GeneTree:ENSGT00700000104475 GO:GO:0060743 InterPro:IPR018533
            Pfam:PF09354 CTD:3169 KO:K09387 OMA:ALEPSYY GO:GO:0060738
            GO:GO:0060528 EMBL:CT737389 RefSeq:XP_001929311.1 UniGene:Ssc.61132
            Ensembl:ENSSSCT00000002172 GeneID:100156502 KEGG:ssc:100156502
            Uniprot:F1SHK8
        Length = 468

 Score = 194 (73.4 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 37/79 (46%), Positives = 49/79 (62%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY QN  RW+NS+RH+LS N  
Sbjct:   167 HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDC 226

Query:   107 FRKGVKASQ--GAGHLWNL 123
             F K  ++    G G  W L
Sbjct:   227 FVKVARSPDKPGKGSYWTL 245


>MGI|MGI:1347472 [details] [associations]
            symbol:Foxa1 "forkhead box A1" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;IBA;IMP] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=ISO] [GO:0003677 "DNA
            binding" evidence=ISO;IDA] [GO:0003690 "double-stranded DNA
            binding" evidence=ISO;IBA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=ISO;IDA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription
            factor complex" evidence=IBA] [GO:0006338 "chromatin remodeling"
            evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0007275 "multicellular organismal
            development" evidence=IEA] [GO:0007389 "pattern specification
            process" evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=ISO;IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0010468
            "regulation of gene expression" evidence=IGI] [GO:0010719 "negative
            regulation of epithelial to mesenchymal transition" evidence=ISO]
            [GO:0016568 "chromatin modification" evidence=IEA] [GO:0019904
            "protein domain specific binding" evidence=ISO;IBA] [GO:0030324
            "lung development" evidence=IGI] [GO:0032355 "response to estradiol
            stimulus" evidence=ISO] [GO:0033148 "positive regulation of
            intracellular estrogen receptor signaling pathway" evidence=ISO]
            [GO:0035239 "tube morphogenesis" evidence=IMP] [GO:0042445 "hormone
            metabolic process" evidence=IMP] [GO:0042593 "glucose homeostasis"
            evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISO;IDA] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=ISO] [GO:0045666 "positive regulation of neuron
            differentiation" evidence=IGI;IMP] [GO:0045931 "positive regulation
            of mitotic cell cycle" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISO;IGI;IDA] [GO:0048665 "neuron fate specification"
            evidence=IGI] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0051091
            "positive regulation of sequence-specific DNA binding transcription
            factor activity" evidence=ISO] [GO:0060441 "epithelial tube
            branching involved in lung morphogenesis" evidence=IGI] [GO:0060487
            "lung epithelial cell differentiation" evidence=IGI] [GO:0060528
            "secretory columnal luminar epithelial cell differentiation
            involved in prostate glandular acinus development" evidence=IMP]
            [GO:0060738 "epithelial-mesenchymal signaling involved in prostate
            gland development" evidence=IGI] [GO:0060740 "prostate gland
            epithelium morphogenesis" evidence=IMP] [GO:0060741 "prostate gland
            stromal morphogenesis" evidence=IMP] [GO:0060743 "epithelial cell
            maturation involved in prostate gland development" evidence=IMP]
            InterPro:IPR001766 InterPro:IPR013638 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 MGI:MGI:1347472
            GO:GO:0019904 GO:GO:0051091 GO:GO:0032355 GO:GO:0045931
            GO:GO:0043565 GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0042593 GO:GO:0005667 GO:GO:0003705 GO:GO:0006338
            GO:GO:0000122 GO:GO:0008301 GO:GO:0009790 GO:GO:0044212
            GO:GO:0003690 GO:GO:0045666 GO:GO:0008134 GO:GO:0042445
            GO:GO:0007389 GO:GO:0033148 GO:GO:0060740 GO:GO:0060487
            GO:GO:0048665 GO:GO:0051090 GO:GO:0060441 GO:GO:0010719
            GO:GO:0060741 eggNOG:COG5025 GeneTree:ENSGT00700000104475
            GO:GO:0060743 InterPro:IPR018533 Pfam:PF09354 CTD:3169
            HOGENOM:HOG000231817 HOVERGEN:HBG006621 KO:K09387 OMA:ALEPSYY
            GO:GO:0060738 GO:GO:0060528 EMBL:X74936 EMBL:U44752 EMBL:BC096524
            IPI:IPI00310116 PIR:A54258 RefSeq:NP_032285.2 UniGene:Mm.4578
            ProteinModelPortal:P35582 SMR:P35582 STRING:P35582
            PhosphoSite:P35582 PRIDE:P35582 Ensembl:ENSMUST00000044380
            GeneID:15375 KEGG:mmu:15375 UCSC:uc007nps.1 InParanoid:Q4VA63
            OrthoDB:EOG466VMM NextBio:288026 Bgee:P35582 CleanEx:MM_FOXA1
            Genevestigator:P35582 GermOnline:ENSMUSG00000035451 Uniprot:P35582
        Length = 468

 Score = 194 (73.4 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 37/79 (46%), Positives = 49/79 (62%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY QN  RW+NS+RH+LS N  
Sbjct:   168 HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDC 227

Query:   107 FRKGVKASQ--GAGHLWNL 123
             F K  ++    G G  W L
Sbjct:   228 FVKVARSPDKPGKGSYWTL 246


>UNIPROTKB|P55317 [details] [associations]
            symbol:FOXA1 "Hepatocyte nuclear factor 3-alpha"
            species:9606 "Homo sapiens" [GO:0042445 "hormone metabolic process"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0010817
            "regulation of hormone levels" evidence=IBA] [GO:0019904 "protein
            domain specific binding" evidence=IBA] [GO:0042593 "glucose
            homeostasis" evidence=IBA] [GO:0045666 "positive regulation of
            neuron differentiation" evidence=IBA] [GO:0048665 "neuron fate
            specification" evidence=IBA] [GO:0060441 "epithelial tube branching
            involved in lung morphogenesis" evidence=IBA] [GO:0060487 "lung
            epithelial cell differentiation" evidence=IBA] [GO:0060528
            "secretory columnal luminar epithelial cell differentiation
            involved in prostate glandular acinus development" evidence=IBA]
            [GO:0060738 "epithelial-mesenchymal signaling involved in prostate
            gland development" evidence=IBA] [GO:0060740 "prostate gland
            epithelium morphogenesis" evidence=IBA] [GO:0060741 "prostate gland
            stromal morphogenesis" evidence=IBA] [GO:0060743 "epithelial cell
            maturation involved in prostate gland development" evidence=IBA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IMP;IDA]
            [GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0051091
            "positive regulation of sequence-specific DNA binding transcription
            factor activity" evidence=IMP] [GO:0045931 "positive regulation of
            mitotic cell cycle" evidence=IMP] [GO:0033148 "positive regulation
            of intracellular estrogen receptor signaling pathway" evidence=IMP]
            [GO:0032355 "response to estradiol stimulus" evidence=IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=TAS] [GO:0001077 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=ISS] [GO:0010719 "negative regulation of
            epithelial to mesenchymal transition" evidence=IMP] [GO:2000049
            "positive regulation of cell-cell adhesion mediated by cadherin"
            evidence=IC] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0019904 GO:GO:0051091 GO:GO:0032355 GO:GO:0045931
            GO:GO:0043565 Pathway_Interaction_DB:hnf3apathway GO:GO:2000049
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0042593
            Pathway_Interaction_DB:hnf3bpathway GO:GO:0005667 GO:GO:0003705
            GO:GO:0001077 GO:GO:0006338 GO:GO:0008301 GO:GO:0009790
            GO:GO:0044212 EMBL:CH471078 GO:GO:0003690 GO:GO:0045666
            GO:GO:0008134 GO:GO:0042445 GO:GO:0007389 GO:GO:0033148
            GO:GO:0060740 GO:GO:0060487 GO:GO:0048665 GO:GO:0010817
            GO:GO:0060441 GO:GO:0010719 GO:GO:0060741 eggNOG:COG5025
            GO:GO:0060743 InterPro:IPR018533 Pfam:PF09354 EMBL:U39840
            EMBL:AF176112 EMBL:AF176111 EMBL:AF303743 EMBL:AF303742
            EMBL:AK313785 EMBL:AL121790 EMBL:BC033890 IPI:IPI01014973
            PIR:S70357 RefSeq:NP_004487.2 UniGene:Hs.163484
            ProteinModelPortal:P55317 SMR:P55317 DIP:DIP-57138N IntAct:P55317
            MINT:MINT-2804254 STRING:P55317 PhosphoSite:P55317 DMDM:296434509
            PaxDb:P55317 PRIDE:P55317 DNASU:3169 Ensembl:ENST00000250448
            GeneID:3169 KEGG:hsa:3169 UCSC:uc001wuf.3 CTD:3169
            GeneCards:GC14M038059 H-InvDB:HIX0011609 HGNC:HGNC:5021
            HPA:CAB011595 MIM:602294 neXtProt:NX_P55317 PharmGKB:PA201090
            HOGENOM:HOG000231817 HOVERGEN:HBG006621 InParanoid:P55317 KO:K09387
            OMA:ALEPSYY OrthoDB:EOG4C2HCT PhylomeDB:P55317
            Pathway_Interaction_DB:hnf3pathway ChiTaRS:FOXA1 GenomeRNAi:3169
            NextBio:12564 ArrayExpress:P55317 Bgee:P55317 CleanEx:HS_FOXA1
            Genevestigator:P55317 GO:GO:0060738 GO:GO:0060528 Uniprot:P55317
        Length = 472

 Score = 194 (73.4 bits), Expect = 8.7e-13, P = 8.7e-13
 Identities = 37/79 (46%), Positives = 49/79 (62%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY QN  RW+NS+RH+LS N  
Sbjct:   168 HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDC 227

Query:   107 FRKGVKASQ--GAGHLWNL 123
             F K  ++    G G  W L
Sbjct:   228 FVKVARSPDKPGKGSYWTL 246


>UNIPROTKB|F6UTY3 [details] [associations]
            symbol:FOXA1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR001766
            InterPro:IPR013638 InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GeneTree:ENSGT00700000104475 InterPro:IPR018533
            Pfam:PF09354 OMA:ALEPSYY Ensembl:ENSCAFT00000021805
            EMBL:AAEX03005682 EMBL:AAEX03005683 Uniprot:F6UTY3
        Length = 481

 Score = 194 (73.4 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 37/79 (46%), Positives = 49/79 (62%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A+++     LT+S IYQWI + FPYY QN  RW+NS+RH+LS N  
Sbjct:   168 HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDC 227

Query:   107 FRKGVKASQ--GAGHLWNL 123
             F K  ++    G G  W L
Sbjct:   228 FVKVARSPDKPGKGSYWTL 246


>UNIPROTKB|Q4H3I3 [details] [associations]
            symbol:Ci-FoxJ2 "Transcription factor protein" species:7719
            "Ciona intestinalis" [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0009888 "tissue
            development" evidence=IBA] [GO:0019904 "protein domain specific
            binding" evidence=IBA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IBA] [GO:0048513 "organ
            development" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0019904 GO:GO:0045893 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 GO:GO:0048513 eggNOG:COG5025
            GO:GO:0009888 CTD:55810 HOGENOM:HOG000231184 KO:K09403
            EMBL:AB210439 RefSeq:NP_001071714.1 UniGene:Cin.31124
            ProteinModelPortal:Q4H3I3 SMR:Q4H3I3 GeneID:778617 KEGG:cin:778617
            InParanoid:Q4H3I3 Uniprot:Q4H3I3
        Length = 560

 Score = 195 (73.7 bits), Expect = 9.3e-13, P = 9.3e-13
 Identities = 54/169 (31%), Positives = 81/169 (47%)

Query:    51 KPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+   ++  +T+S IYQWI + FPYY+     WKNS+RHNLS+N  F 
Sbjct:    76 KPPYSYASLISLAINSSNEKKMTLSEIYQWICKTFPYYSGAGTGWKNSIRHNLSLNKCFM 135

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTET 166
             K  +A    G G  W + D  P ED   S  +  + K     +   E    +S  +S + 
Sbjct:   136 KVPRAKDDPGKGSYWAI-DSNPQEDPILSRPRGIKRKARPGDMGVYEDNSFHSSNDSIQQ 194

Query:   167 P--------APSMETMPQPQP-QPLNTMSL-AHDPLQPFEV-YSQESKT 204
             P        AP    M  PQ   P++ +   +  P+   ++ + Q S T
Sbjct:   195 PNQRIMQVCAPDFSNMASPQQGSPVHALPCHSSTPVNHAQLPHGQNSST 243


>UNIPROTKB|P33205 [details] [associations]
            symbol:foxa4-a "Forkhead box protein A4-A" species:8355
            "Xenopus laevis" [GO:0001707 "mesoderm formation" evidence=IMP]
            [GO:0001840 "neural plate development" evidence=IMP] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0009948 "anterior/posterior axis specification" evidence=IMP]
            [GO:0030900 "forebrain development" evidence=IMP] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IDA]
            InterPro:IPR001766 InterPro:IPR013638 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0045892 GO:GO:0030154 GO:GO:0043565 GO:GO:0030900
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0001707 GO:GO:0009948 GO:GO:0001840 InterPro:IPR018533
            Pfam:PF09354 HOVERGEN:HBG006621 EMBL:X65171 EMBL:U65751
            EMBL:BC082358 PIR:S35719 RefSeq:NP_001080963.1 UniGene:Xl.441
            ProteinModelPortal:P33205 SMR:P33205 GeneID:394304 KEGG:xla:394304
            CTD:394304 Xenbase:XB-GENE-865612 Uniprot:P33205
        Length = 399

 Score = 192 (72.6 bits), Expect = 9.6e-13, P = 9.6e-13
 Identities = 46/126 (36%), Positives = 68/126 (53%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAK---THRKPPFTYTELIE 61
             SL  M     G  +P  P  T+++     Q E E +  P   +   +H KPP++Y  LI 
Sbjct:    72 SLGSMPQGMVGSLAP--PPSTAAYPLGYCQGESEFQRDPRTYRRNYSHAKPPYSYISLIT 129

Query:    62 QALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GA 117
              A+++     +T++ IYQWI + FPYY QN  RW+NS+RH+LS N  F K  ++ +  G 
Sbjct:   130 MAIQQAPNKMMTLNEIYQWIIDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVPRSPEKPGK 189

Query:   118 GHLWNL 123
             G  W L
Sbjct:   190 GSYWTL 195


>UNIPROTKB|F1S6I8 [details] [associations]
            symbol:FOXL1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0007507 "heart development" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0007507 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00690000101636 KO:K09405 OMA:PFLSYFP EMBL:FP102684
            RefSeq:XP_003126859.1 Ensembl:ENSSSCT00000002949 GeneID:100511634
            KEGG:ssc:100511634 Uniprot:F1S6I8
        Length = 338

 Score = 189 (71.6 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 39/102 (38%), Positives = 62/102 (60%)

Query:    46 AKTHRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSI 103
             A+  +KPP++Y  LI  A+++    ++T+SGIYQ+I +RFP+Y+ N   W+NS+RHNLS+
Sbjct:    44 AEPPQKPPYSYIALIAMAIQDAPGQRVTLSGIYQFIMDRFPFYHDNRQGWQNSIRHNLSL 103

Query:   104 NPHFRK--GVKASQGAGHLWNLSDMEPVEDASKSNWKKNRLK 143
             N  F K    K   G G  W L D   ++     N+++ + K
Sbjct:   104 NDCFVKVPREKGRPGKGSYWTL-DPRCLDMFENGNYRRRKRK 144


>UNIPROTKB|F1LW53 [details] [associations]
            symbol:Foxn4 "Protein Foxn4" species:10116 "Rattus
            norvegicus" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            RGD:1306389 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0048663
            IPI:IPI00371218 Ensembl:ENSRNOT00000000871 Uniprot:F1LW53
        Length = 493

 Score = 193 (73.0 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 53/157 (33%), Positives = 74/157 (47%)

Query:    44 SHAKTHRKPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNL 101
             +H K + KP ++Y+ LI  ALK      L VS IY ++ E FPY+    D WKNSVRHNL
Sbjct:   161 AHPKHYPKPIYSYSCLIAMALKSSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNSVRHNL 220

Query:   102 SINPHFRKGVKASQGA---GHLW--NLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGD 156
             S+N  F K      G+   G LW  NL+ ++ VE+     WK+  L     S+   E  D
Sbjct:   221 SLNKCFEKVETKPSGSSRKGCLWALNLARIDKVEE-EMHKWKRKDLAAIHRSMANPEELD 279

Query:   157 DYSGQNSTETPAPSMETMPQ-PQPQPLNTMSLAHDPL 192
                         P  +  P+ P      T+++ H  L
Sbjct:   280 KLISDRPESCRRPGKQGEPEVPVLTRATTVAMTHSCL 316


>UNIPROTKB|H9L2W5 [details] [associations]
            symbol:FOXD1 "Forkhead box protein D1" species:9031 "Gallus
            gallus" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0001829 "trophectodermal cell
            differentiation" evidence=IEA] [GO:0001892 "embryonic placenta
            development" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GeneTree:ENSGT00700000104135 EMBL:AADN02041744
            Ensembl:ENSGALT00000036037 OMA:SSICEFI Uniprot:H9L2W5
        Length = 104

 Score = 172 (65.6 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 39/98 (39%), Positives = 56/98 (57%)

Query:    51 KPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+ +  Q  LT+SGI ++IS RFPYY +    W+NS+RHNLS+N  F 
Sbjct:     6 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 65

Query:   109 KGVK--ASQGAGHLWNLSDM-EPVEDASKSNWKKNRLK 143
             K  +   + G G+ W L    E + D      ++ R K
Sbjct:    66 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFK 103


>RGD|621715 [details] [associations]
            symbol:Foxd3 "forkhead box D3" species:10116 "Rattus norvegicus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;ISS] [GO:0000790 "nuclear
            chromatin" evidence=ISO] [GO:0000977 "RNA polymerase II regulatory
            region sequence-specific DNA binding" evidence=ISO] [GO:0001227
            "RNA polymerase II transcription regulatory region
            sequence-specific DNA binding transcription factor activity
            involved in negative regulation of transcription" evidence=ISO]
            [GO:0001658 "branching involved in ureteric bud morphogenesis"
            evidence=IBA] [GO:0001701 "in utero embryonic development"
            evidence=ISO;ISS] [GO:0001755 "neural crest cell migration"
            evidence=IBA] [GO:0001822 "kidney development" evidence=IBA]
            [GO:0001829 "trophectodermal cell differentiation"
            evidence=ISO;IBA] [GO:0001892 "embryonic placenta development"
            evidence=ISO;IBA] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003690 "double-stranded DNA binding" evidence=IMP] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA;ISO;ISS] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=TAS] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0007422 "peripheral nervous system development"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0030318 "melanocyte differentiation" evidence=IBA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA;ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;ISS;IBA] [GO:0048484 "enteric
            nervous system development" evidence=IBA] [GO:0048485 "sympathetic
            nervous system development" evidence=IBA] [GO:0048846 "axon
            extension involved in axon guidance" evidence=IBA] [GO:0048937
            "lateral line nerve glial cell development" evidence=IBA]
            [GO:0050935 "iridophore differentiation" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0051216 "cartilage development"
            evidence=IBA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 RGD:621715 GO:GO:0001755 GO:GO:0043565 GO:GO:0045944
            GO:GO:0007422 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0000122 GO:GO:0008301 GO:GO:0044212
            GO:GO:0001822 GO:GO:0003690 GO:GO:0051216 GO:GO:0001829
            GO:GO:0008134 GO:GO:0007389 GO:GO:0001658 GO:GO:0048485
            GO:GO:0030318 GO:GO:0001892 GO:GO:0048484 GO:GO:0051090
            GO:GO:0048846 eggNOG:COG5025 GO:GO:0048937 GO:GO:0050935
            HOGENOM:HOG000231285 EMBL:L13202 IPI:IPI00765696 PIR:I60917
            UniGene:Rn.92964 PDB:2HDC PDB:2HFH PDBsum:2HDC PDBsum:2HFH
            ProteinModelPortal:Q63245 SMR:Q63245 STRING:Q63245
            PhosphoSite:Q63245 UCSC:RGD:621715 HOVERGEN:HBG083674
            InParanoid:Q63245 EvolutionaryTrace:Q63245 ArrayExpress:Q63245
            Genevestigator:Q63245 GermOnline:ENSRNOG00000009021 Uniprot:Q63245
        Length = 101

 Score = 172 (65.6 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 39/98 (39%), Positives = 56/98 (57%)

Query:    51 KPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+ +  Q  LT+SGI ++IS RFPYY +    W+NS+RHNLS+N  F 
Sbjct:     3 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 62

Query:   109 KGVK--ASQGAGHLWNLSDM-EPVEDASKSNWKKNRLK 143
             K  +   + G G+ W L    E + D      ++ R K
Sbjct:    63 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFK 100


>UNIPROTKB|Q63245 [details] [associations]
            symbol:Foxd3 "Forkhead box protein D3" species:10116
            "Rattus norvegicus" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 RGD:621715 GO:GO:0001755 GO:GO:0043565 GO:GO:0045944
            GO:GO:0007422 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0000122 GO:GO:0008301 GO:GO:0044212
            GO:GO:0001822 GO:GO:0003690 GO:GO:0051216 GO:GO:0001829
            GO:GO:0008134 GO:GO:0007389 GO:GO:0001658 GO:GO:0048485
            GO:GO:0030318 GO:GO:0001892 GO:GO:0048484 GO:GO:0051090
            GO:GO:0048846 eggNOG:COG5025 GO:GO:0048937 GO:GO:0050935
            HOGENOM:HOG000231285 EMBL:L13202 IPI:IPI00765696 PIR:I60917
            UniGene:Rn.92964 PDB:2HDC PDB:2HFH PDBsum:2HDC PDBsum:2HFH
            ProteinModelPortal:Q63245 SMR:Q63245 STRING:Q63245
            PhosphoSite:Q63245 UCSC:RGD:621715 HOVERGEN:HBG083674
            InParanoid:Q63245 EvolutionaryTrace:Q63245 ArrayExpress:Q63245
            Genevestigator:Q63245 GermOnline:ENSRNOG00000009021 Uniprot:Q63245
        Length = 101

 Score = 172 (65.6 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 39/98 (39%), Positives = 56/98 (57%)

Query:    51 KPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+ +  Q  LT+SGI ++IS RFPYY +    W+NS+RHNLS+N  F 
Sbjct:     3 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 62

Query:   109 KGVK--ASQGAGHLWNLSDM-EPVEDASKSNWKKNRLK 143
             K  +   + G G+ W L    E + D      ++ R K
Sbjct:    63 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFK 100


>UNIPROTKB|Q7SAT6 [details] [associations]
            symbol:NCU06173 "Putative uncharacterized protein"
            species:367110 "Neurospora crassa OR74A" [GO:0000790 "nuclear
            chromatin" evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000790 GO:GO:0003690 GO:GO:0008134 GO:GO:0051090
            eggNOG:COG5025 EMBL:AABX02000025 OrthoDB:EOG4XKZH6
            RefSeq:XP_962742.2 UniGene:Ncr.24238 ProteinModelPortal:Q7SAT6
            EnsemblFungi:EFNCRT00000006051 GeneID:3878890 KEGG:ncr:NCU06173
            OMA:NARISDS Uniprot:Q7SAT6
        Length = 806

 Score = 194 (73.4 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 54/171 (31%), Positives = 80/171 (46%)

Query:    51 KPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KP  +Y  LI  A+    Q  LT+S IY+WI+E F +Y  +D  W+NS+RHNLS+N HF 
Sbjct:   209 KPHHSYATLIGMAILRSPQRRLTLSQIYKWIAETFSFYQLSDSGWQNSIRHNLSLNKHFI 268

Query:   109 KGV--KASQGAGHLWNLSD--------MEPVEDASKSNWKKNRLKTYLESLQPS---EWG 155
             K    K   G G+ W +           +P   A  S      + T LE  QP    +  
Sbjct:   269 KQERPKDDPGKGNYWAIEPGAEQFFMKEKPSRKAPPSAENLPVMSTRLEPSQPPLGVQPQ 328

Query:   156 DDYSGQNSTETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFP 206
             +  S  +    P P +   P P+PQP     L  +P+ P +  + +++  P
Sbjct:   329 EPNSPSSRANKPQPQLSQAPSPRPQPPQA-PLPDEPVLPPQPPTTQAQLAP 378

 Score = 43 (20.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query:     7 EPMELKPPGQFSPMEPCQTSSH 28
             EP  +  PG FSP+    T  H
Sbjct:   190 EPTPVPEPGSFSPIIDDGTKPH 211


>UNIPROTKB|F1RGB6 [details] [associations]
            symbol:FOXN4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048663 "neuron fate commitment" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
            DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0048663 GeneTree:ENSGT00700000104051
            OMA:QQMASGR EMBL:CU329699 Ensembl:ENSSSCT00000010888 Uniprot:F1RGB6
        Length = 489

 Score = 192 (72.6 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 59/188 (31%), Positives = 80/188 (42%)

Query:    13 PPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKH--QL 70
             P G + P    +T    P P            H K + KP ++Y+ LI  ALK      L
Sbjct:   131 PVGLYGPPFGART----PYPQSRMAVHASQELHPKHYPKPIYSYSCLIAMALKNSKTGSL 186

Query:    71 TVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA---GHLW--NLSD 125
              VS IY ++ E FPY+    D WKNSVRHNLS+N  F K      G+   G LW  NL+ 
Sbjct:   187 PVSEIYSFMKEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKMSGSSRKGCLWALNLAR 246

Query:   126 MEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQ-PQPQPLNT 184
             ++ +E+     WK+  L     S+   E  D            P     P  P      T
Sbjct:   247 IDKMEE-EMHKWKRKDLAAIHRSMANPEELDKLISDRPESCRRPGKPGEPDAPMLTHATT 305

Query:   185 MSLAHDPL 192
             +++AH  L
Sbjct:   306 VAMAHSCL 313


>UNIPROTKB|E9PPI7 [details] [associations]
            symbol:FOXK2 "Forkhead box protein K2" species:9606 "Homo
            sapiens" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 EMBL:AC124287 HGNC:HGNC:6036
            ChiTaRS:FOXK2 EMBL:AC124283 IPI:IPI00982638 Ensembl:ENST00000526383
            ArrayExpress:E9PPI7 Bgee:E9PPI7 Uniprot:E9PPI7
        Length = 254

 Score = 180 (68.4 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 41/108 (37%), Positives = 62/108 (57%)

Query:    33 SQSEVEDRCCPSHA-KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQN 89
             SQ E E       + K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY   
Sbjct:   119 SQPENEKEASGGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTA 178

Query:    90 DDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
             D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + +E A
Sbjct:   179 DKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQA 226


>UNIPROTKB|H7C1Y6 [details] [associations]
            symbol:FOXJ3 "Forkhead box protein J3" species:9606 "Homo
            sapiens" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 EMBL:AC096540 EMBL:AC114492
            HGNC:HGNC:29178 ChiTaRS:FOXJ3 ProteinModelPortal:H7C1Y6
            PRIDE:H7C1Y6 Ensembl:ENST00000454417 Bgee:H7C1Y6 Uniprot:H7C1Y6
        Length = 125

 Score = 171 (65.3 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 32/70 (45%), Positives = 44/70 (62%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    K ++T+S IYQWI + FPYY +    WKNS+RHNLS+N  F 
Sbjct:    35 KPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFL 94

Query:   109 KGVKASQGAG 118
             K  ++    G
Sbjct:    95 KVPRSKDDPG 104


>UNIPROTKB|E1B8F2 [details] [associations]
            symbol:FOXN4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0048663 "neuron fate commitment" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
            DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0048663 GeneTree:ENSGT00700000104051
            OMA:QQMASGR EMBL:DAAA02045481 IPI:IPI00686151
            Ensembl:ENSBTAT00000014397 Uniprot:E1B8F2
        Length = 519

 Score = 192 (72.6 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 53/156 (33%), Positives = 73/156 (46%)

Query:    45 HAKTHRKPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLS 102
             H K + KP ++Y+ LI  ALK      L VS IY ++ E FPY+    D WKNSVRHNLS
Sbjct:   189 HPKHYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNSVRHNLS 248

Query:   103 INPHFRKGVKASQGA---GHLW--NLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDD 157
             +N  F K      G+   G LW  NL+ ++ +E+     WK+  L     S+   E  D 
Sbjct:   249 LNKCFEKVENKMSGSSRKGCLWALNLARIDKMEE-EMHKWKRKDLAAIHRSMANPEELDK 307

Query:   158 YSGQNSTETPAPSMETMPQ-PQPQPLNTMSLAHDPL 192
                        P     P+ P      T+++AH  L
Sbjct:   308 LISDRPESCRRPGKPGEPEAPALTHATTVAMAHSCL 343


>UNIPROTKB|F1M3L2 [details] [associations]
            symbol:Foxj3 "Protein Foxj3" species:10116 "Rattus
            norvegicus" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 RGD:1311770 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00700000104094 IPI:IPI00568727
            Ensembl:ENSRNOT00000011683 ArrayExpress:F1M3L2 Uniprot:F1M3L2
        Length = 621

 Score = 193 (73.0 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 44/114 (38%), Positives = 61/114 (53%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    K ++T+S IYQWI + FPYY +    WKNS+RHNLS+N  F 
Sbjct:    77 KPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFL 136

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSG 160
             K  ++    G G  W + D  P ED   +  KK R ++   +  P     D  G
Sbjct:   137 KVPRSKDDPGKGSYWAI-DTNPKEDTLPTRPKK-RARSVERASTPYSIDSDSLG 188


>UNIPROTKB|Q9UPW0 [details] [associations]
            symbol:FOXJ3 "Forkhead box protein J3" species:9606 "Homo
            sapiens" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0019904 "protein
            domain specific binding" evidence=IBA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IBA]
            [GO:0048513 "organ development" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0019904 GO:GO:0045893
            EMBL:CH471059 GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0009790
            GO:GO:0003690 GO:GO:0008134 GO:GO:0007389 GO:GO:0051090
            GO:GO:0048513 eggNOG:COG5025 GO:GO:0009888 HOGENOM:HOG000231184
            HOVERGEN:HBG051648 KO:K09403 EMBL:AB028964 EMBL:AC096540
            EMBL:AC114492 EMBL:BC014182 EMBL:BC151828 EMBL:BC152441
            EMBL:AL157422 IPI:IPI00010426 IPI:IPI00414683 PIR:T46900
            RefSeq:NP_001185779.1 RefSeq:NP_001185780.1 RefSeq:NP_001185781.1
            RefSeq:NP_055762.3 UniGene:Hs.26023 ProteinModelPortal:Q9UPW0
            SMR:Q9UPW0 IntAct:Q9UPW0 STRING:Q9UPW0 PhosphoSite:Q9UPW0
            DMDM:296434510 PRIDE:Q9UPW0 DNASU:22887 Ensembl:ENST00000361346
            Ensembl:ENST00000361776 Ensembl:ENST00000372572
            Ensembl:ENST00000372573 Ensembl:ENST00000545068 GeneID:22887
            KEGG:hsa:22887 UCSC:uc001che.3 UCSC:uc001chh.2 CTD:22887
            GeneCards:GC01M042642 HGNC:HGNC:29178 neXtProt:NX_Q9UPW0
            PharmGKB:PA134945417 InParanoid:Q9UPW0 OMA:MSQQHMM
            OrthoDB:EOG4MCX01 PhylomeDB:Q9UPW0 ChiTaRS:FOXJ3 GenomeRNAi:22887
            NextBio:43479 ArrayExpress:Q9UPW0 Bgee:Q9UPW0 CleanEx:HS_FOXJ3
            Genevestigator:Q9UPW0 GermOnline:ENSG00000198815 Uniprot:Q9UPW0
        Length = 622

 Score = 193 (73.0 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 44/114 (38%), Positives = 61/114 (53%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    K ++T+S IYQWI + FPYY +    WKNS+RHNLS+N  F 
Sbjct:    78 KPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFL 137

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSG 160
             K  ++    G G  W + D  P ED   +  KK R ++   +  P     D  G
Sbjct:   138 KVPRSKDDPGKGSYWAI-DTNPKEDVLPTRPKK-RARSVERASTPYSIDSDSLG 189


>RGD|1311770 [details] [associations]
            symbol:Foxj3 "forkhead box J3" species:10116 "Rattus norvegicus"
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0019904 "protein
            domain specific binding" evidence=IBA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IBA]
            [GO:0048513 "organ development" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 RGD:1311770 GO:GO:0019904
            GO:GO:0045893 GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0009790
            GO:GO:0003690 GO:GO:0008134 GO:GO:0007389 GO:GO:0051090
            GO:GO:0048513 GO:GO:0009888 IPI:IPI00359077
            Ensembl:ENSRNOT00000041401 UCSC:RGD:1311770 ArrayExpress:F1M9U9
            Uniprot:F1M9U9
        Length = 587

 Score = 192 (72.6 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
 Identities = 40/93 (43%), Positives = 54/93 (58%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    K ++T+S IYQWI + FPYY +    WKNS+RHNLS+N  F 
Sbjct:    77 KPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFL 136

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKK 139
             K  ++    G G  W + D  P ED   +  KK
Sbjct:   137 KVPRSKDDPGKGSYWAI-DTNPKEDTLPTRPKK 168

 Score = 40 (19.1 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
 Identities = 22/93 (23%), Positives = 40/93 (43%)

Query:   133 SKSNWKKNRLKTYLESLQPSEW---GDDY-----SGQNSTETPAPSMETMPQPQPQPLNT 184
             S+SN ++N     +   +PS+    G+ Y     SG   +  P P    +PQ    P  T
Sbjct:   488 SQSNAQQNVCHGAMHPAKPSQHIGAGNLYIDSRQSGIPPSVMPPPGYPHIPQALNTPGTT 547

Query:   185 MSLAHDPLQ-----PFEVYSQESKTFPYEECKD 212
             M+  H  +      P + + Q  ++ P ++ +D
Sbjct:   548 MAGHHGAMNQQHMMPSQAF-QMRRSLPPDDIQD 579


>UNIPROTKB|E2QSH5 [details] [associations]
            symbol:FOXL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0007507 "heart development" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0007507 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00690000101636 CTD:2300 KO:K09405 OMA:PFLSYFP
            EMBL:AAEX03003995 RefSeq:XP_851625.1 Ensembl:ENSCAFT00000031682
            GeneID:609291 KEGG:cfa:609291 NextBio:20894896 Uniprot:E2QSH5
        Length = 356

 Score = 188 (71.2 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 38/102 (37%), Positives = 63/102 (61%)

Query:    46 AKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSI 103
             A+  +KPP++Y  LI  A+++  + ++T++GIYQ+I +RFP+Y+ N   W+NS+RHNLS+
Sbjct:    44 AEPPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSL 103

Query:   104 NPHFRK--GVKASQGAGHLWNLSDMEPVEDASKSNWKKNRLK 143
             N  F K    K   G G  W L D   ++     N+++ + K
Sbjct:   104 NECFVKVPREKGRPGKGSYWTL-DPRCLDMFENGNYRRRKRK 144


>UNIPROTKB|F1ME43 [details] [associations]
            symbol:FOXL1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0007507 "heart development" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0007507 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00690000101636 CTD:2300 KO:K09405 OMA:PFLSYFP
            EMBL:DAAA02046218 IPI:IPI00710921 RefSeq:XP_002694802.1
            RefSeq:XP_583889.1 Ensembl:ENSBTAT00000053216 GeneID:538955
            KEGG:bta:538955 NextBio:20877688 Uniprot:F1ME43
        Length = 346

 Score = 187 (70.9 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 44/133 (33%), Positives = 73/133 (54%)

Query:    50 RKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  LI  A+++  + ++T++GIYQ+I +RFP+Y+ N   W+NS+RHNLS+N  F
Sbjct:    48 QKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSLNDCF 107

Query:   108 RK--GVKASQGAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTE 165
              K    K   G G  W L D   ++     N+++ + K      +P   G + + +   E
Sbjct:   108 VKVPREKGRPGKGSYWTL-DPRCLDMFENGNYRRRKRKP-----KPGPGGPE-AKRVRAE 160

Query:   166 TPAPSMETMPQPQ 178
             T     E  P+ Q
Sbjct:   161 TQERGAEAPPEVQ 173


>UNIPROTKB|Q99958 [details] [associations]
            symbol:FOXC2 "Forkhead box protein C2" species:9606 "Homo
            sapiens" [GO:0014032 "neural crest cell development" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0072011 "glomerular endothelium development"
            evidence=IEA] [GO:0072112 "glomerular visceral epithelial cell
            differentiation" evidence=IEA] [GO:0072144 "glomerular mesangial
            cell development" evidence=IEA] [GO:0007507 "heart development"
            evidence=IMP] [GO:0007498 "mesoderm development" evidence=NAS]
            [GO:0001503 "ossification" evidence=IBA] [GO:0001569 "patterning of
            blood vessels" evidence=IBA] [GO:0001570 "vasculogenesis"
            evidence=IBA] [GO:0001656 "metanephros development" evidence=IBA]
            [GO:0001657 "ureteric bud development" evidence=IBA] [GO:0001756
            "somitogenesis" evidence=IBA] [GO:0001974 "blood vessel remodeling"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007219 "Notch signaling pathway" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0014034
            "neural crest cell fate commitment" evidence=IBA] [GO:0030199
            "collagen fibril organization" evidence=IBA] [GO:0035050 "embryonic
            heart tube development" evidence=IBA] [GO:0043010 "camera-type eye
            development" evidence=IBA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISS;IBA]
            [GO:0046620 "regulation of organ growth" evidence=IBA] [GO:0048010
            "vascular endothelial growth factor receptor signaling pathway"
            evidence=IBA] [GO:0048343 "paraxial mesodermal cell fate
            commitment" evidence=IBA] [GO:0048703 "embryonic viscerocranium
            morphogenesis" evidence=IBA] [GO:0048844 "artery morphogenesis"
            evidence=IBA] [GO:0050880 "regulation of blood vessel size"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0055010
            "ventricular cardiac muscle tissue morphogenesis" evidence=IBA]
            [GO:0060038 "cardiac muscle cell proliferation" evidence=IBA]
            [GO:0001946 "lymphangiogenesis" evidence=IMP] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0008286 "insulin receptor signaling pathway" evidence=IDA]
            [GO:0031490 "chromatin DNA binding" evidence=IDA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] [GO:0009725 "response
            to hormone stimulus" evidence=IDA] [GO:0001077 "RNA polymerase II
            core promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=IDA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0010595 "positive regulation of endothelial cell migration"
            evidence=ISS] [GO:0033630 "positive regulation of cell adhesion
            mediated by integrin" evidence=ISS] [GO:0035470 "positive
            regulation of vascular wound healing" evidence=ISS] [GO:0090050
            "positive regulation of cell migration involved in sprouting
            angiogenesis" evidence=ISS] [GO:0044212 "transcription regulatory
            region DNA binding" evidence=ISS] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0008286
            GO:GO:0043565 GO:GO:0030199 GO:GO:0007219 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0001077
            GO:GO:0000122 GO:GO:0008301 GO:GO:0001756 GO:GO:0043010
            GO:GO:0044212 GO:GO:0001974 GO:GO:0003690 GO:GO:0072144
            GO:GO:0001946 GO:GO:0001569 GO:GO:0033630 GO:GO:0001570
            GO:GO:0008134 GO:GO:0014032 GO:GO:0050880 GO:GO:0001503
            GO:GO:0048844 GO:GO:0031490 GO:GO:0001656 GO:GO:0001657
            GO:GO:0051090 GO:GO:0046620 GO:GO:0072112 GO:GO:0048010
            GO:GO:0060038 GO:GO:0055010 GO:GO:0072011 GO:GO:0048703
            eggNOG:COG5025 KO:K09396 GO:GO:0035050 HOVERGEN:HBG051640
            GO:GO:0014034 GO:GO:0048343 HOGENOM:HOG000007939 OrthoDB:EOG4MCX19
            EMBL:Y08223 EMBL:GQ282998 EMBL:BC113437 EMBL:BC113439
            IPI:IPI00019155 RefSeq:NP_005242.1 UniGene:Hs.740701 PDB:1D5V
            PDBsum:1D5V ProteinModelPortal:Q99958 SMR:Q99958 IntAct:Q99958
            STRING:Q99958 PhosphoSite:Q99958 DMDM:3024149 PaxDb:Q99958
            PRIDE:Q99958 DNASU:2303 Ensembl:ENST00000320354 GeneID:2303
            KEGG:hsa:2303 UCSC:uc002fjq.3 CTD:2303 GeneCards:GC16P086600
            HGNC:HGNC:3801 MIM:153200 MIM:153300 MIM:153400 MIM:602402
            neXtProt:NX_Q99958 Orphanet:33001 Orphanet:662 PharmGKB:PA28218
            InParanoid:Q99958 OMA:LNHLPGH PhylomeDB:Q99958
            EvolutionaryTrace:Q99958 GenomeRNAi:2303 NextBio:9351 Bgee:Q99958
            CleanEx:HS_FOXC2 Genevestigator:Q99958 GermOnline:ENSG00000176692
            GO:GO:0090050 GO:GO:0035470 Uniprot:Q99958
        Length = 501

 Score = 178 (67.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 35/85 (41%), Positives = 54/85 (63%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P+  K   KPP++Y  LI  A++   + ++T++GIYQ+I +RFP+Y +N   W+NS+RHN
Sbjct:    64 PAAPKDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHN 123

Query:   101 LSINPHFRKGVKASQ--GAGHLWNL 123
             LS+N  F K  +  +  G G  W L
Sbjct:   124 LSLNECFVKVPRDDKKPGKGSYWTL 148

 Score = 53 (23.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   158 YSGQNSTETPAPSMETMPQPQPQP 181
             + G +  + P P     PQP PQP
Sbjct:   391 HHGHHHPQAPPPPPAPQPQPTPQP 414


>UNIPROTKB|F1MVT0 [details] [associations]
            symbol:FOXC2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0090050 "positive regulation of cell migration involved
            in sprouting angiogenesis" evidence=IEA] [GO:0072144 "glomerular
            mesangial cell development" evidence=IEA] [GO:0072112 "glomerular
            visceral epithelial cell differentiation" evidence=IEA] [GO:0072011
            "glomerular endothelium development" evidence=IEA] [GO:0060038
            "cardiac muscle cell proliferation" evidence=IEA] [GO:0055010
            "ventricular cardiac muscle tissue morphogenesis" evidence=IEA]
            [GO:0050880 "regulation of blood vessel size" evidence=IEA]
            [GO:0048844 "artery morphogenesis" evidence=IEA] [GO:0048703
            "embryonic viscerocranium morphogenesis" evidence=IEA] [GO:0048343
            "paraxial mesodermal cell fate commitment" evidence=IEA]
            [GO:0048010 "vascular endothelial growth factor receptor signaling
            pathway" evidence=IEA] [GO:0046620 "regulation of organ growth"
            evidence=IEA] [GO:0044212 "transcription regulatory region DNA
            binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0043066 "negative regulation of apoptotic
            process" evidence=IEA] [GO:0043010 "camera-type eye development"
            evidence=IEA] [GO:0035470 "positive regulation of vascular wound
            healing" evidence=IEA] [GO:0035050 "embryonic heart tube
            development" evidence=IEA] [GO:0033630 "positive regulation of cell
            adhesion mediated by integrin" evidence=IEA] [GO:0031490 "chromatin
            DNA binding" evidence=IEA] [GO:0030199 "collagen fibril
            organization" evidence=IEA] [GO:0014032 "neural crest cell
            development" evidence=IEA] [GO:0008286 "insulin receptor signaling
            pathway" evidence=IEA] [GO:0007219 "Notch signaling pathway"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0001974 "blood
            vessel remodeling" evidence=IEA] [GO:0001946 "lymphangiogenesis"
            evidence=IEA] [GO:0001756 "somitogenesis" evidence=IEA] [GO:0001657
            "ureteric bud development" evidence=IEA] [GO:0001656 "metanephros
            development" evidence=IEA] [GO:0001569 "patterning of blood
            vessels" evidence=IEA] [GO:0001503 "ossification" evidence=IEA]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IEA]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0008286 GO:GO:0043565 GO:GO:0030199 GO:GO:0007219
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003705 GO:GO:0001077
            GO:GO:0000122 GO:GO:0001756 GO:GO:0043010 GO:GO:0044212
            GO:GO:0001974 GO:GO:0072144 GO:GO:0001946 GO:GO:0001569
            GO:GO:0033630 GO:GO:0014032 GO:GO:0050880 GO:GO:0001503
            GO:GO:0048844 GO:GO:0031490 GO:GO:0001656 GO:GO:0001657
            GO:GO:0046620 GO:GO:0072112 GO:GO:0048010 GO:GO:0060038
            GO:GO:0055010 GO:GO:0072011 GO:GO:0048703 GO:GO:0035050
            GeneTree:ENSGT00690000101636 GO:GO:0048343 OMA:LNHLPGH
            GO:GO:0090050 GO:GO:0035470 EMBL:DAAA02046218 IPI:IPI00691047
            UniGene:Bt.30376 Ensembl:ENSBTAT00000016540 NextBio:20867997
            Uniprot:F1MVT0
        Length = 502

 Score = 178 (67.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 35/85 (41%), Positives = 54/85 (63%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P+  K   KPP++Y  LI  A++   + ++T++GIYQ+I +RFP+Y +N   W+NS+RHN
Sbjct:    64 PAAPKDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHN 123

Query:   101 LSINPHFRKGVKASQ--GAGHLWNL 123
             LS+N  F K  +  +  G G  W L
Sbjct:   124 LSLNECFVKVPRDDKKPGKGSYWTL 148

 Score = 53 (23.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   158 YSGQNSTETPAPSMETMPQPQPQP 181
             + G +  + P P     PQP PQP
Sbjct:   392 HHGHHHPQAPPPPPAPQPQPAPQP 415


>UNIPROTKB|E2R919 [details] [associations]
            symbol:FOXN4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0048663 "neuron fate commitment"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0048663
            GeneTree:ENSGT00700000104051 OMA:QQMASGR EMBL:AAEX03014749
            EMBL:AAEX03014750 Ensembl:ENSCAFT00000017359 NextBio:20860106
            Uniprot:E2R919
        Length = 523

 Score = 186 (70.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 64/198 (32%), Positives = 88/198 (44%)

Query:     4 ASLEPMELKPPGQFSPMEPCQTS---SHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELI 60
             AS   + L P GQ  P      S   +  P P            H K + KP ++Y+ LI
Sbjct:   152 ASQTQLPLPPGGQQCPPVGLYGSPFGARPPYPQPRMAVHSSQELHPKHYPKPIYSYSCLI 211

Query:    61 EQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA- 117
               ALK      L VS IY ++ E FPY+    D WKNSVRHNLS+N  F K      G+ 
Sbjct:   212 AMALKNSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKMSGSS 271

Query:   118 --GHLW--NLSDMEPVEDASKSNWKKNRLKTYLESL-QPSEWGDDYSGQ-NSTETPAPSM 171
               G LW  N++ ++ +E+     WK+  L     S+  P E     S +  S   P  + 
Sbjct:   272 RKGCLWALNVARIDKMEE-EMHKWKRKDLAAIHRSMANPEELDKLISDRPESCRRPG-NP 329

Query:   172 ETMPQPQPQPLNTMSLAH 189
             ET   P      T+++AH
Sbjct:   330 ET---PVLTHATTVAMAH 344

 Score = 44 (20.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query:   176 QPQPQPLNTMSLAHDPLQPFEVYSQ 200
             Q  PQPL T+SL   PL   +V +Q
Sbjct:   351 QLPPQPLMTLSLQSVPLH-HQVQAQ 374


>RGD|621703 [details] [associations]
            symbol:Foxc2 "forkhead box C2" species:10116 "Rattus norvegicus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0001077 "RNA polymerase
            II core promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=ISO] [GO:0001501 "skeletal system
            development" evidence=ISO] [GO:0001503 "ossification"
            evidence=ISO;IBA] [GO:0001568 "blood vessel development"
            evidence=ISO] [GO:0001569 "patterning of blood vessels"
            evidence=ISO;IBA] [GO:0001570 "vasculogenesis" evidence=IBA]
            [GO:0001656 "metanephros development" evidence=ISO;IBA] [GO:0001657
            "ureteric bud development" evidence=ISO;IBA] [GO:0001756
            "somitogenesis" evidence=ISO;IBA] [GO:0001822 "kidney development"
            evidence=ISO] [GO:0001945 "lymph vessel development" evidence=ISO]
            [GO:0001946 "lymphangiogenesis" evidence=ISO;IBA] [GO:0001974
            "blood vessel remodeling" evidence=ISO;IBA] [GO:0003007 "heart
            morphogenesis" evidence=ISO] [GO:0003677 "DNA binding"
            evidence=ISO;IDA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=ISO;IBA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] [GO:0007219 "Notch signaling pathway"
            evidence=ISO;IBA] [GO:0007507 "heart development" evidence=ISO]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0008283 "cell proliferation" evidence=ISO] [GO:0008286 "insulin
            receptor signaling pathway" evidence=ISO;IBA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0009725 "response to hormone
            stimulus" evidence=ISO] [GO:0010595 "positive regulation of
            endothelial cell migration" evidence=ISO] [GO:0014032 "neural crest
            cell development" evidence=ISO] [GO:0014034 "neural crest cell fate
            commitment" evidence=IBA] [GO:0030199 "collagen fibril
            organization" evidence=ISO;IBA] [GO:0031490 "chromatin DNA binding"
            evidence=ISO;IBA] [GO:0033630 "positive regulation of cell adhesion
            mediated by integrin" evidence=ISO] [GO:0035050 "embryonic heart
            tube development" evidence=ISO;IBA] [GO:0035470 "positive
            regulation of vascular wound healing" evidence=ISO] [GO:0043010
            "camera-type eye development" evidence=ISO;IBA] [GO:0043066
            "negative regulation of apoptotic process" evidence=ISO]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA;ISO]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=ISO] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISO;IBA]
            [GO:0046620 "regulation of organ growth" evidence=ISO;IBA]
            [GO:0048010 "vascular endothelial growth factor receptor signaling
            pathway" evidence=ISO;IBA] [GO:0048341 "paraxial mesoderm
            formation" evidence=ISO] [GO:0048343 "paraxial mesodermal cell fate
            commitment" evidence=ISO;IBA] [GO:0048701 "embryonic cranial
            skeleton morphogenesis" evidence=ISO] [GO:0048703 "embryonic
            viscerocranium morphogenesis" evidence=ISO;IBA] [GO:0048704
            "embryonic skeletal system morphogenesis" evidence=ISO] [GO:0048844
            "artery morphogenesis" evidence=ISO;IBA] [GO:0050880 "regulation of
            blood vessel size" evidence=ISO;IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0055010 "ventricular cardiac muscle tissue
            morphogenesis" evidence=ISO;IBA] [GO:0060038 "cardiac muscle cell
            proliferation" evidence=ISO;IBA] [GO:0072011 "glomerular
            endothelium development" evidence=ISO] [GO:0072112 "glomerular
            visceral epithelial cell differentiation" evidence=ISO] [GO:0072144
            "glomerular mesangial cell development" evidence=ISO] [GO:0090050
            "positive regulation of cell migration involved in sprouting
            angiogenesis" evidence=ISO] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 RGD:621703 GO:GO:0008286
            GO:GO:0043565 GO:GO:0030199 GO:GO:0045944 GO:GO:0007219
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0001756 GO:GO:0043010 GO:GO:0001974
            GO:GO:0003690 GO:GO:0001946 GO:GO:0001569 GO:GO:0001570
            GO:GO:0008134 GO:GO:0050880 GO:GO:0001503 GO:GO:0048844
            GO:GO:0031490 GO:GO:0001656 GO:GO:0001657 GO:GO:0051090
            GO:GO:0046620 GO:GO:0048010 GO:GO:0060038 GO:GO:0055010
            GO:GO:0048703 GO:GO:0035050 GO:GO:0014034 GO:GO:0048343 EMBL:L13193
            IPI:IPI00206921 PIR:I60918 UniGene:Rn.216723
            ProteinModelPortal:Q63246 SMR:Q63246 Genevestigator:Q63246
            Uniprot:Q63246
        Length = 101

 Score = 169 (64.5 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 32/77 (41%), Positives = 50/77 (64%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  L   A++   + ++T++GIYQ+I +RFP+Y +N   W+NS+RHNLS+N  F 
Sbjct:     3 KPPYSYIALSTMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 62

Query:   109 KGVKASQ--GAGHLWNL 123
             K  +  +  G G  W L
Sbjct:    63 KVPRDDKKPGKGSYWTL 79


>UNIPROTKB|F1NZC8 [details] [associations]
            symbol:FOXN4 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GeneTree:ENSGT00700000104051 EMBL:AADN02035003
            IPI:IPI00813841 Ensembl:ENSGALT00000008117 Uniprot:F1NZC8
        Length = 444

 Score = 189 (71.6 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 63/211 (29%), Positives = 92/211 (43%)

Query:    25 TSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKH--QLTVSGIYQWISER 82
             T  H P+P  +    +    H K + KP ++Y+ LI  ALK      L VS IY ++ E 
Sbjct:   135 TQPHYPQPRLAPHSAQ--ELHPKHYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEH 192

Query:    83 FPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA---GHLW--NLSDMEPVEDASKSNW 137
             FPY+    D WKNSVRHNLS+N  F K      G    G LW  N + ++ +E+  +  W
Sbjct:   193 FPYFKTAPDGWKNSVRHNLSLNKCFEKVENKMSGTSRKGCLWALNPAKIDKMEEEMQK-W 251

Query:   138 KKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQ--PLNTMSLAHDPLQPF 195
             K+  L     S+   E  D       T+ P     +  Q +P+   LN M+ A   +   
Sbjct:   252 KRKDLAAIHRSMANPEELDKLI----TDRPENCRRSSKQAEPEISTLNHMAAAQGRISIS 307

Query:   196 EVYSQESKTFPYEECKDVLYIQSNDNVLYTP 226
             ++  Q   T   +     L+ Q       TP
Sbjct:   308 QLQPQPIMTLSLQSVP--LHHQIQTQARITP 336


>ZFIN|ZDB-GENE-990415-277 [details] [associations]
            symbol:foxn4 "forkhead box N4" species:7955 "Danio
            rerio" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA;IDA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0048513 "organ development" evidence=IBA]
            [GO:0048675 "axon extension" evidence=IBA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0009888 "tissue development" evidence=IBA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0008016 "regulation of heart
            contraction" evidence=IMP] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-990415-277 GO:GO:0045893 GO:GO:0043565 GO:GO:0008016
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 GO:GO:0048513 GO:GO:0048675
            GO:GO:0009888 HSSP:Q63244 HOVERGEN:HBG051655 EMBL:AJ252024
            IPI:IPI00482255 UniGene:Dr.81266 ProteinModelPortal:Q9PT94
            InParanoid:Q9PT94 ArrayExpress:Q9PT94 Uniprot:Q9PT94
        Length = 550

 Score = 177 (67.4 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
 Identities = 56/174 (32%), Positives = 80/174 (45%)

Query:    47 KTHRKPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K   KP ++Y+ LI  ALK      L VS IY ++ E FPY+    D WKNSVRHNLS+N
Sbjct:   227 KCFPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNSVRHNLSLN 286

Query:   105 PHFRKGVKASQGA---GHLW--NLSDMEPVEDASKSNWKKNRLKTYLESL-QPSEWGD-- 156
               F K      G+   G LW  N + ++ +E+  +  WK+  L     S+  P E     
Sbjct:   287 KCFEKVENKMSGSSRKGCLWALNPAKIDKMEEEMQK-WKRKDLPAIRRSMANPDELDKLI 345

Query:   157 -DYSGQNSTETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEE 209
              D       ++  P M  +P   P    T+ LA   +QP  V +   +  P  +
Sbjct:   346 TDRPESCRQKSVDPGMTRLPSCPPG--QTLPLAAQ-MQPQPVVTLSLQCLPMHQ 396

 Score = 55 (24.4 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query:     8 PMELKPPGQFSPMEPCQTSSHKPEPSQ----SEVEDRCCP 43
             P+ +    QFSP  PC  S ++  P Q    ++   +C P
Sbjct:   160 PLAINSMPQFSPGFPCAASVYQTAPQQVLTFTQANQQCSP 199


>UNIPROTKB|Q96NZ1 [details] [associations]
            symbol:FOXN4 "Forkhead box protein N4" species:9606 "Homo
            sapiens" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0048663 "neuron fate commitment" evidence=IEA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008016 "regulation of
            heart contraction" evidence=IBA] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0048513 "organ
            development" evidence=IBA] [GO:0048675 "axon extension"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0043565 GO:GO:0008016 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0009790
            GO:GO:0003690 GO:GO:0008134 GO:GO:0007389 GO:GO:0051090
            GO:GO:0048663 GO:GO:0048513 GO:GO:0048675 eggNOG:COG5025
            GO:GO:0009888 KO:K09407 EMBL:AC012384 EMBL:AF425596 EMBL:AF425597
            EMBL:AK131519 IPI:IPI00289457 IPI:IPI00377176 RefSeq:NP_998761.2
            UniGene:Hs.528316 ProteinModelPortal:Q96NZ1 SMR:Q96NZ1
            STRING:Q96NZ1 PhosphoSite:Q96NZ1 DMDM:71153520 PRIDE:Q96NZ1
            Ensembl:ENST00000299162 Ensembl:ENST00000355216
            Ensembl:ENST00000423960 GeneID:121643 KEGG:hsa:121643
            UCSC:uc001toe.4 CTD:121643 GeneCards:GC12M109715 HGNC:HGNC:21399
            MIM:609429 neXtProt:NX_Q96NZ1 PharmGKB:PA134982965
            HOGENOM:HOG000232153 HOVERGEN:HBG051655 InParanoid:Q96NZ1
            OMA:QQMASGR GenomeRNAi:121643 NextBio:80794 Bgee:Q96NZ1
            CleanEx:HS_FOXN4 Genevestigator:Q96NZ1 GermOnline:ENSG00000139445
            Uniprot:Q96NZ1
        Length = 517

 Score = 190 (71.9 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 58/185 (31%), Positives = 82/185 (44%)

Query:    13 PPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKH--QL 70
             P G + P  P       P+P  +    +    H K + KP ++Y+ LI  ALK      L
Sbjct:   159 PVGLYGP--PFGVRPPYPQPHVAVHSSQ--ELHPKHYPKPIYSYSCLIAMALKNSKTGSL 214

Query:    71 TVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA---GHLW--NLSD 125
              VS IY ++ E FPY+    D WKNSVRHNLS+N  F K      G+   G LW  NL+ 
Sbjct:   215 PVSEIYSFMKEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKMSGSSRKGCLWALNLAR 274

Query:   126 MEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQ-PQPQPLNT 184
             ++ +E+     WK+  L     S+   E  D            P     P+ P      T
Sbjct:   275 IDKMEE-EMHKWKRKDLAAIHRSMANPEELDKLISDRPESCRRPGKPGEPEAPVLTHATT 333

Query:   185 MSLAH 189
             +++AH
Sbjct:   334 VAVAH 338


>UNIPROTKB|Q4H3I2 [details] [associations]
            symbol:Ci-FoxK "Transcription factor protein" species:7719
            "Ciona intestinalis" [GO:0000287 "magnesium ion binding"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0009888 "tissue
            development" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] InterPro:IPR000253 InterPro:IPR001766
            InterPro:IPR008984 InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006
            PROSITE:PS50039 SMART:SM00240 SMART:SM00339 GO:GO:0000287
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991
            Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 eggNOG:COG5025 GO:GO:0009888 KO:K09404
            EMBL:AB210440 RefSeq:NP_001071715.1 UniGene:Cin.25903
            ProteinModelPortal:Q4H3I2 SMR:Q4H3I2 GeneID:778618 KEGG:cin:778618
            CTD:588569 InParanoid:Q4H3I2 Uniprot:Q4H3I2
        Length = 614

 Score = 191 (72.3 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 42/101 (41%), Positives = 63/101 (62%)

Query:    51 KPPFTYTELIEQALKEK-H-QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y +LI QA+    H QLT+SGIY  I++ +PYY   D  W+NS+RHNLS+N +F 
Sbjct:   271 KPPYSYAQLIIQAISSAPHRQLTLSGIYAHITKNYPYYRTADKGWQNSIRHNLSLNRYFV 330

Query:   109 KGVKASQ--GAGHLWNL---SDMEPVEDASKSNWKKNRLKT 144
             K  ++ +  G G  W +   S+ + VE A    W+K R ++
Sbjct:   331 KVPRSQEESGKGSFWKVDPASERKLVEQA----WRKRRQRS 367


>WB|WBGene00004013 [details] [associations]
            symbol:pha-4 species:6239 "Caenorhabditis elegans"
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040018 "positive regulation of
            multicellular organism growth" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0008340
            "determination of adult lifespan" evidence=IGI;IMP] [GO:0006629
            "lipid metabolic process" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0060465 "pharynx development" evidence=IGI;IMP]
            [GO:0048598 "embryonic morphogenesis" evidence=IMP] [GO:0000981
            "sequence-specific DNA binding RNA polymerase II transcription
            factor activity" evidence=IMP] [GO:0060573 "cell fate specification
            involved in pattern specification" evidence=IMP] [GO:0030154 "cell
            differentiation" evidence=IMP] [GO:0045727 "positive regulation of
            translation" evidence=IMP] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0016239 "positive regulation of macroautophagy" evidence=IMP]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0008340 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
            GO:GO:0019904 GO:GO:0002119 GO:GO:0048598 GO:GO:0043565
            GO:GO:0045944 GO:GO:0006629 GO:GO:0040011 GO:GO:0040018
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0040035 GO:GO:0003690 GO:GO:0008134
            GO:GO:0045727 GO:GO:0060465 GO:GO:0051090 GO:GO:0016239
            eggNOG:COG5025 GO:GO:0009888 EMBL:Z92833 HSSP:Q99958
            GeneTree:ENSGT00690000101636 GO:GO:0060573 EMBL:U51163 PIR:T21941
            RefSeq:NP_001041114.1 RefSeq:NP_001041115.1 RefSeq:NP_001041116.1
            ProteinModelPortal:Q17381 SMR:Q17381 DIP:DIP-27474N IntAct:Q17381
            MINT:MINT-1038224 STRING:Q17381 PaxDb:Q17381
            EnsemblMetazoa:F38A6.1a GeneID:180357 KEGG:cel:CELE_F38A6.1
            UCSC:F38A6.1a CTD:180357 WormBase:F38A6.1a WormBase:F38A6.1b
            WormBase:F38A6.1c HOGENOM:HOG000115523 InParanoid:Q17381
            OMA:PSRKKRN NextBio:909012 Uniprot:Q17381
        Length = 506

 Score = 189 (71.6 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 47/142 (33%), Positives = 73/142 (51%)

Query:    51 KPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+++ +  QLT+S IY WI + FPYY  N  RW+NS+RH+LS N  F 
Sbjct:   236 KPPYSYISLITMAIQKSNSRQLTLSEIYNWIMDLFPYYQNNQQRWQNSIRHSLSFNDCFV 295

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTY-LESLQPSEWGDDYSGQN-ST 164
             K  ++    G G  W L   E   +  ++     R K + ++  +PS    + + Q    
Sbjct:   296 KVARSPDKPGKGSFWTLH--EHCGNMFENGCYLRRQKRFKVKEREPSRKKRNANSQQLHQ 353

Query:   165 ETPAPSMETMPQPQPQPLNTMS 186
             +   P ME + +  P  + T S
Sbjct:   354 QQHIPKME-IKEEDPTSITTTS 374


>UNIPROTKB|Q17381 [details] [associations]
            symbol:pha-4 "Defective pharyngeal development protein 4"
            species:6239 "Caenorhabditis elegans" [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=IMP] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0019904 "protein domain specific
            binding" evidence=IBA] [GO:0009888 "tissue development"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0008340 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
            GO:GO:0019904 GO:GO:0002119 GO:GO:0048598 GO:GO:0043565
            GO:GO:0045944 GO:GO:0006629 GO:GO:0040011 GO:GO:0040018
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0040035 GO:GO:0003690 GO:GO:0008134
            GO:GO:0045727 GO:GO:0060465 GO:GO:0051090 GO:GO:0016239
            eggNOG:COG5025 GO:GO:0009888 EMBL:Z92833 HSSP:Q99958
            GeneTree:ENSGT00690000101636 GO:GO:0060573 EMBL:U51163 PIR:T21941
            RefSeq:NP_001041114.1 RefSeq:NP_001041115.1 RefSeq:NP_001041116.1
            ProteinModelPortal:Q17381 SMR:Q17381 DIP:DIP-27474N IntAct:Q17381
            MINT:MINT-1038224 STRING:Q17381 PaxDb:Q17381
            EnsemblMetazoa:F38A6.1a GeneID:180357 KEGG:cel:CELE_F38A6.1
            UCSC:F38A6.1a CTD:180357 WormBase:F38A6.1a WormBase:F38A6.1b
            WormBase:F38A6.1c HOGENOM:HOG000115523 InParanoid:Q17381
            OMA:PSRKKRN NextBio:909012 Uniprot:Q17381
        Length = 506

 Score = 189 (71.6 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 47/142 (33%), Positives = 73/142 (51%)

Query:    51 KPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+++ +  QLT+S IY WI + FPYY  N  RW+NS+RH+LS N  F 
Sbjct:   236 KPPYSYISLITMAIQKSNSRQLTLSEIYNWIMDLFPYYQNNQQRWQNSIRHSLSFNDCFV 295

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTY-LESLQPSEWGDDYSGQN-ST 164
             K  ++    G G  W L   E   +  ++     R K + ++  +PS    + + Q    
Sbjct:   296 KVARSPDKPGKGSFWTLH--EHCGNMFENGCYLRRQKRFKVKEREPSRKKRNANSQQLHQ 353

Query:   165 ETPAPSMETMPQPQPQPLNTMS 186
             +   P ME + +  P  + T S
Sbjct:   354 QQHIPKME-IKEEDPTSITTTS 374


>FB|FBgn0000659 [details] [associations]
            symbol:fkh "fork head" species:7227 "Drosophila melanogaster"
            [GO:0005634 "nucleus" evidence=ISS;NAS;IDA] [GO:0000976
            "transcription regulatory region sequence-specific DNA binding"
            evidence=IDA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS;IDA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISS;NAS]
            [GO:0007443 "Malpighian tubule morphogenesis" evidence=IMP;TAS]
            [GO:0007439 "ectodermal digestive tract development" evidence=TAS]
            [GO:0007435 "salivary gland morphogenesis" evidence=IMP;TAS]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IMP;TAS] [GO:0007432 "salivary gland boundary
            specification" evidence=NAS] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IBA;TAS]
            [GO:0001706 "endoderm formation" evidence=TAS] [GO:0007431
            "salivary gland development" evidence=IMP;NAS] [GO:0035072
            "ecdysone-mediated induction of salivary gland cell autophagic cell
            death" evidence=IDA] [GO:0043069 "negative regulation of programmed
            cell death" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0030308 "negative regulation of cell growth" evidence=IMP]
            [GO:0040015 "negative regulation of multicellular organism growth"
            evidence=IMP] [GO:0042023 "DNA endoreduplication" evidence=IMP]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0019904 "protein domain specific binding"
            evidence=IBA] InterPro:IPR001766 InterPro:IPR013638
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF08430 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            EMBL:AE014297 GO:GO:0019904 GO:GO:0043066 GO:GO:0030308
            GO:GO:0043565 GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0000122 GO:GO:0008301
            GO:GO:0003690 GO:GO:0040015 GO:GO:0008134 GO:GO:0007389
            GO:GO:0051090 GO:GO:0042023 GO:GO:0035072 GO:GO:0007443
            eggNOG:COG5025 GO:GO:0001706 GeneTree:ENSGT00700000104135
            EMBL:J03177 PIR:A32380 RefSeq:NP_001163762.1 RefSeq:NP_524542.1
            UniGene:Dm.22561 ProteinModelPortal:P14734 SMR:P14734
            DIP:DIP-17045N IntAct:P14734 MINT:MINT-307436 STRING:P14734
            PRIDE:P14734 EnsemblMetazoa:FBtr0085321 EnsemblMetazoa:FBtr0300259
            GeneID:43383 KEGG:dme:Dmel_CG10002 CTD:43383 FlyBase:FBgn0000659
            InParanoid:P14734 KO:K08035 OMA:HANAELC OrthoDB:EOG4280HD
            PhylomeDB:P14734 GenomeRNAi:43383 NextBio:833634 Bgee:P14734
            GermOnline:CG10002 GO:GO:0007439 InterPro:IPR018533 Pfam:PF09354
            Uniprot:P14734
        Length = 510

 Score = 189 (71.6 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 46/130 (35%), Positives = 64/130 (49%)

Query:     1 MEYASLEPMELKPPGQFSPMEPCQTSSHKPEPS---QSEVEDRCCPSHAKTHRKPPFTYT 57
             M  AS+    L   G +  M P         P+   +S V+       + TH KPP++Y 
Sbjct:   159 MSAASMSAAGLS--GTYGAMPPGSREMETGSPNSLGRSRVDKPTTYRRSYTHAKPPYSYI 216

Query:    58 ELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ 115
              LI  A++      LT+S IYQ+I + FP+Y QN  RW+NS+RH+LS N  F K  +   
Sbjct:   217 SLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKIPRTPD 276

Query:   116 --GAGHLWNL 123
               G G  W L
Sbjct:   277 KPGKGSFWTL 286


>WB|WBGene00001434 [details] [associations]
            symbol:fkh-2 species:6239 "Caenorhabditis elegans"
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA;IMP] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0040017 "positive
            regulation of locomotion" evidence=IMP] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IGI;IMP]
            [GO:0002119 "nematode larval development" evidence=IGI] [GO:0005634
            "nucleus" evidence=IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IMP]
            [GO:0035058 "nonmotile primary cilium assembly" evidence=IMP]
            [GO:0016358 "dendrite development" evidence=IMP] [GO:0048665
            "neuron fate specification" evidence=IMP] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0009792
            GO:GO:0007346 GO:GO:0002119 GO:GO:0043565 GO:GO:0045944
            GO:GO:0016199 GO:GO:0016358 GO:GO:0045665 GO:GO:0040017
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0009953 GO:GO:0008134
            GO:GO:0009880 GO:GO:0048665 GO:GO:0045787 GO:GO:0002052
            GO:GO:0051090 GO:GO:0035058 eggNOG:COG5025 GO:GO:0009888
            HSSP:Q99958 KO:K09385 GeneTree:ENSGT00700000104051 EMBL:FO080253
            PIR:T16880 RefSeq:NP_508644.1 ProteinModelPortal:Q22510 SMR:Q22510
            DIP:DIP-25543N IntAct:Q22510 MINT:MINT-1074755 STRING:Q22510
            EnsemblMetazoa:T14G12.4a GeneID:180663 KEGG:cel:CELE_T14G12.4
            UCSC:T14G12.4a CTD:180663 WormBase:T14G12.4a HOGENOM:HOG000020237
            InParanoid:Q22510 OMA:ARMDAYK NextBio:910344 ArrayExpress:Q22510
            Uniprot:Q22510
        Length = 270

 Score = 180 (68.4 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 40/102 (39%), Positives = 59/102 (57%)

Query:    26 SSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERF 83
             S     PS S  E++  PS    + KPPF+Y  LI  A+K+  + +LT++GIY++I   +
Sbjct:    71 SKDSKSPSSSNSEEKT-PS--SPNDKPPFSYNALIMMAIKDSPEKRLTLAGIYEYIVTNY 127

Query:    84 PYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNL 123
             P+Y  N   W+NS+RHNLS+N  F K  +     G G+ W L
Sbjct:   128 PFYRDNKQGWQNSIRHNLSLNKCFVKVPRNFDDPGKGNYWML 169


>UNIPROTKB|Q22510 [details] [associations]
            symbol:fkh-2 "Protein FKH-2, isoform a" species:6239
            "Caenorhabditis elegans" [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0045787 "positive regulation of cell cycle"
            evidence=IBA] [GO:0045665 "negative regulation of neuron
            differentiation" evidence=IBA] [GO:0016199 "axon midline choice
            point recognition" evidence=IBA] [GO:0009953 "dorsal/ventral
            pattern formation" evidence=IBA] [GO:0009888 "tissue development"
            evidence=IBA] [GO:0009880 "embryonic pattern specification"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0002052
            "positive regulation of neuroblast proliferation" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0009792 GO:GO:0007346 GO:GO:0002119 GO:GO:0043565
            GO:GO:0045944 GO:GO:0016199 GO:GO:0016358 GO:GO:0045665
            GO:GO:0040017 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0003690 GO:GO:0009953
            GO:GO:0008134 GO:GO:0009880 GO:GO:0048665 GO:GO:0045787
            GO:GO:0002052 GO:GO:0051090 GO:GO:0035058 eggNOG:COG5025
            GO:GO:0009888 HSSP:Q99958 KO:K09385 GeneTree:ENSGT00700000104051
            EMBL:FO080253 PIR:T16880 RefSeq:NP_508644.1
            ProteinModelPortal:Q22510 SMR:Q22510 DIP:DIP-25543N IntAct:Q22510
            MINT:MINT-1074755 STRING:Q22510 EnsemblMetazoa:T14G12.4a
            GeneID:180663 KEGG:cel:CELE_T14G12.4 UCSC:T14G12.4a CTD:180663
            WormBase:T14G12.4a HOGENOM:HOG000020237 InParanoid:Q22510
            OMA:ARMDAYK NextBio:910344 ArrayExpress:Q22510 Uniprot:Q22510
        Length = 270

 Score = 180 (68.4 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 40/102 (39%), Positives = 59/102 (57%)

Query:    26 SSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERF 83
             S     PS S  E++  PS    + KPPF+Y  LI  A+K+  + +LT++GIY++I   +
Sbjct:    71 SKDSKSPSSSNSEEKT-PS--SPNDKPPFSYNALIMMAIKDSPEKRLTLAGIYEYIVTNY 127

Query:    84 PYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNL 123
             P+Y  N   W+NS+RHNLS+N  F K  +     G G+ W L
Sbjct:   128 PFYRDNKQGWQNSIRHNLSLNKCFVKVPRNFDDPGKGNYWML 169


>UNIPROTKB|F1ME54 [details] [associations]
            symbol:FOXE1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0060465 "pharynx development" evidence=IEA] [GO:0060023
            "soft palate development" evidence=IEA] [GO:0060022 "hard palate
            development" evidence=IEA] [GO:0048562 "embryonic organ
            morphogenesis" evidence=IEA] [GO:0048538 "thymus development"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0031069 "hair follicle
            morphogenesis" evidence=IEA] [GO:0030878 "thyroid gland
            development" evidence=IEA] [GO:0016477 "cell migration"
            evidence=IEA] [GO:0006590 "thyroid hormone generation"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0045893 GO:GO:0016477
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0048538 GO:GO:0060465 GO:GO:0031069
            GO:GO:0006590 GO:GO:0060023 GO:GO:0060022 GO:GO:0030878
            GeneTree:ENSGT00700000104135 CTD:2304 KO:K09398 OMA:TGYQPAG
            GO:GO:0048562 EMBL:DAAA02023246 IPI:IPI00702358
            RefSeq:XP_002689770.1 RefSeq:XP_873930.3 UniGene:Bt.87684
            Ensembl:ENSBTAT00000019638 GeneID:616734 KEGG:bta:616734
            NextBio:20900290 Uniprot:F1ME54
        Length = 373

 Score = 180 (68.4 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 40/105 (38%), Positives = 64/105 (60%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    + +LT+ GIY++I+ERFP+Y  N  +W+NS+RHNL++N  F 
Sbjct:    54 KPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCFL 113

Query:   109 KGVKAS--QGAGHLWNLS-DMEPV-EDAS----KSNWKKNRLKTY 145
             K  + +   G G+ W L  + E + E  S    +  +K++ L TY
Sbjct:   114 KIPREAGRPGKGNYWALDPNAEDMFESGSFLRRRKRFKRSDLSTY 158

 Score = 43 (20.2 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 13/46 (28%), Positives = 17/46 (36%)

Query:   150 QPSEWGDDYSGQNSTETPAPSMETMPQPQPQPLNTMSLAHD-PLQP 194
             +P   G  Y+G  +    AP     P   P P     L  + PL P
Sbjct:   189 RPPYPGAVYAGYAAPSLAAPPPVYYPAASPGPCRVFGLVPERPLSP 234


>UNIPROTKB|E2QSH3 [details] [associations]
            symbol:FOXC2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0090050 "positive regulation of cell
            migration involved in sprouting angiogenesis" evidence=IEA]
            [GO:0072144 "glomerular mesangial cell development" evidence=IEA]
            [GO:0072112 "glomerular visceral epithelial cell differentiation"
            evidence=IEA] [GO:0072011 "glomerular endothelium development"
            evidence=IEA] [GO:0060038 "cardiac muscle cell proliferation"
            evidence=IEA] [GO:0055010 "ventricular cardiac muscle tissue
            morphogenesis" evidence=IEA] [GO:0050880 "regulation of blood
            vessel size" evidence=IEA] [GO:0048844 "artery morphogenesis"
            evidence=IEA] [GO:0048703 "embryonic viscerocranium morphogenesis"
            evidence=IEA] [GO:0048343 "paraxial mesodermal cell fate
            commitment" evidence=IEA] [GO:0048010 "vascular endothelial growth
            factor receptor signaling pathway" evidence=IEA] [GO:0046620
            "regulation of organ growth" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0043010 "camera-type eye development"
            evidence=IEA] [GO:0035470 "positive regulation of vascular wound
            healing" evidence=IEA] [GO:0035050 "embryonic heart tube
            development" evidence=IEA] [GO:0033630 "positive regulation of cell
            adhesion mediated by integrin" evidence=IEA] [GO:0031490 "chromatin
            DNA binding" evidence=IEA] [GO:0030199 "collagen fibril
            organization" evidence=IEA] [GO:0014032 "neural crest cell
            development" evidence=IEA] [GO:0008286 "insulin receptor signaling
            pathway" evidence=IEA] [GO:0007219 "Notch signaling pathway"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0001974 "blood
            vessel remodeling" evidence=IEA] [GO:0001946 "lymphangiogenesis"
            evidence=IEA] [GO:0001756 "somitogenesis" evidence=IEA] [GO:0001657
            "ureteric bud development" evidence=IEA] [GO:0001656 "metanephros
            development" evidence=IEA] [GO:0001569 "patterning of blood
            vessels" evidence=IEA] [GO:0001503 "ossification" evidence=IEA]
            [GO:0001077 "RNA polymerase II core promoter proximal region
            sequence-specific DNA binding transcription factor activity
            involved in positive regulation of transcription" evidence=IEA]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0008286 GO:GO:0043565 GO:GO:0030199 GO:GO:0007219
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003705 GO:GO:0001077
            GO:GO:0000122 GO:GO:0001756 GO:GO:0043010 GO:GO:0044212
            GO:GO:0001974 GO:GO:0072144 GO:GO:0001946 GO:GO:0001569
            GO:GO:0033630 GO:GO:0014032 GO:GO:0050880 GO:GO:0001503
            GO:GO:0048844 GO:GO:0031490 GO:GO:0001656 GO:GO:0001657
            GO:GO:0046620 GO:GO:0072112 GO:GO:0048010 GO:GO:0060038
            GO:GO:0055010 GO:GO:0072011 GO:GO:0048703 KO:K09396 GO:GO:0035050
            GeneTree:ENSGT00690000101636 GO:GO:0048343 CTD:2303 OMA:LNHLPGH
            GO:GO:0090050 GO:GO:0035470 EMBL:AAEX03003995 RefSeq:XP_860948.1
            Ensembl:ENSCAFT00000031684 GeneID:489671 KEGG:cfa:489671
            NextBio:20862823 Uniprot:E2QSH3
        Length = 505

 Score = 178 (67.7 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 35/85 (41%), Positives = 54/85 (63%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P+  K   KPP++Y  LI  A++   + ++T++GIYQ+I +RFP+Y +N   W+NS+RHN
Sbjct:    64 PAAPKDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHN 123

Query:   101 LSINPHFRKGVKASQ--GAGHLWNL 123
             LS+N  F K  +  +  G G  W L
Sbjct:   124 LSLNECFVKVPRDDKKPGKGSYWTL 148

 Score = 51 (23.0 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   158 YSGQNSTETPAPSMETMPQPQPQP 181
             + G +  + P P     P PQPQP
Sbjct:   391 HHGHHHPQAPPPPPPPPPAPQPQP 414

 Score = 45 (20.9 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 8/15 (53%), Positives = 8/15 (53%)

Query:   167 PAPSMETMPQPQPQP 181
             P P     PQP PQP
Sbjct:   404 PPPPPAPQPQPAPQP 418

 Score = 44 (20.5 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
 Identities = 8/15 (53%), Positives = 8/15 (53%)

Query:   167 PAPSMETMPQPQPQP 181
             P P     PQPQP P
Sbjct:   402 PPPPPPPAPQPQPAP 416


>UNIPROTKB|P85037 [details] [associations]
            symbol:FOXK1 "Forkhead box protein K1" species:9606 "Homo
            sapiens" [GO:0007517 "muscle organ development" evidence=IEA]
            [GO:0030154 "cell differentiation" evidence=IEA] [GO:0030308
            "negative regulation of cell growth" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IBA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000253 InterPro:IPR001766
            InterPro:IPR008984 InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006
            PROSITE:PS50039 SMART:SM00240 SMART:SM00339 GO:GO:0045892
            GO:GO:0045893 GO:GO:0030154 GO:GO:0005730 GO:GO:0030308
            GO:GO:0000287 GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991
            Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0007517 GO:GO:0003690
            GO:GO:0008134 GO:GO:0007389 EMBL:AC092610 GO:GO:0051090
            eggNOG:COG5025 GO:GO:0009888 EMBL:AK122663 EMBL:AC072054
            EMBL:AC092428 EMBL:BC038434 EMBL:CB959941 EMBL:AW206906
            IPI:IPI00556645 IPI:IPI00807514 RefSeq:NP_001032242.1
            UniGene:Hs.487393 ProteinModelPortal:P85037 SMR:P85037
            IntAct:P85037 STRING:P85037 PhosphoSite:P85037 DMDM:118572324
            PaxDb:P85037 PeptideAtlas:P85037 PRIDE:P85037
            Ensembl:ENST00000328914 Ensembl:ENST00000446823 GeneID:221937
            KEGG:hsa:221937 UCSC:uc003sna.1 UCSC:uc003snc.1 CTD:221937
            GeneCards:GC07P004683 HGNC:HGNC:23480 HPA:HPA017998 HPA:HPA018864
            neXtProt:NX_P85037 PharmGKB:PA134978307 HOGENOM:HOG000072588
            HOVERGEN:HBG051649 InParanoid:P85037 KO:K09404 OMA:CEVGPKE
            ChiTaRS:FOXK1 GenomeRNAi:221937 NextBio:91504 ArrayExpress:P85037
            Bgee:P85037 CleanEx:HS_FOXK1 Genevestigator:P85037 Uniprot:P85037
        Length = 733

 Score = 191 (72.3 bits), Expect = 4.3e-12, P = 4.3e-12
 Identities = 40/93 (43%), Positives = 58/93 (62%)

Query:    47 KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K   KPPF+Y +LI QA+   +  QLT+SGIY  I++ +PYY   D  W+NS+RHNLS+N
Sbjct:   301 KDESKPPFSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLN 360

Query:   105 PHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
              +F K  ++ +  G G  W +   S+ + VE A
Sbjct:   361 RYFIKVPRSQEEPGKGSFWRIDPASEAKLVEQA 393


>ZFIN|ZDB-GENE-010302-1 [details] [associations]
            symbol:foxc1a "forkhead box C1a" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0043114 "regulation of vascular
            permeability" evidence=IGI] [GO:0061386 "closure of optic fissure"
            evidence=IMP] [GO:0001568 "blood vessel development" evidence=IGI]
            [GO:0043010 "camera-type eye development" evidence=IGI] [GO:0001756
            "somitogenesis" evidence=IMP] [GO:0001944 "vasculature development"
            evidence=IGI;IMP] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0039021 "pronephric glomerulus
            development" evidence=IGI] [GO:0072149 "glomerular visceral
            epithelial cell fate commitment" evidence=IGI] [GO:0030325 "adrenal
            gland development" evidence=IGI] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-010302-1 GO:GO:0005634 GO:GO:0030325 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0001756 GO:GO:0001568 KO:K09396 HSSP:Q99958
            GeneTree:ENSGT00690000101636 HOVERGEN:HBG051640
            HOGENOM:HOG000007939 EMBL:CU929125 EMBL:AF219949 EMBL:BC053129
            IPI:IPI00510932 RefSeq:NP_571803.1 UniGene:Dr.82483
            ProteinModelPortal:Q9DE25 SMR:Q9DE25 PRIDE:Q9DE25
            Ensembl:ENSDART00000122732 GeneID:100148408 KEGG:dre:100148408
            CTD:100148408 NextBio:20792036 Bgee:Q9DE25 GO:GO:0061386
            GO:GO:0072149 GO:GO:0039021 Uniprot:Q9DE25
        Length = 476

 Score = 188 (71.2 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 57/206 (27%), Positives = 89/206 (43%)

Query:    15 GQFSPMEPCQTSSHKPEP-SQSEVEDRCCPS-HAKTHRKPPFTYTELIEQALKEK--HQL 70
             G  +PM     ++H   P S +       P    K   KPP++Y  LI  A++     ++
Sbjct:    36 GMPAPMTMYSHAAHDQYPASMARAYGPYTPQPQPKDMVKPPYSYIALITMAIQNSPDKKV 95

Query:    71 TVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNLS-DME 127
             T++GIYQ+I ERFP+Y  N   W+NS+RHNLS+N  F K  +  +  G G  W L  D  
Sbjct:    96 TLNGIYQFIMERFPFYRDNKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSY 155

Query:   128 PVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSME-TMPQPQPQPLNTMS 186
              + +      ++ R K         + G   +     +  A   E ++P  QP  +  + 
Sbjct:   156 NMFENGSFLRRRRRFKKKDAMKDKEDRGVKEAPSRQAQPQAREQEQSVPGSQPVRIQDIK 215

Query:   187 LAHDPLQPFEVYSQESKTFPYEECKD 212
               +    P +  S    T P  E  D
Sbjct:   216 TENGTSTPPQAVSPTLSTVPKIESPD 241


>MGI|MGI:1347466 [details] [associations]
            symbol:Foxc1 "forkhead box C1" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0001501 "skeletal system
            development" evidence=IMP] [GO:0001503 "ossification" evidence=IMP]
            [GO:0001541 "ovarian follicle development" evidence=IMP]
            [GO:0001568 "blood vessel development" evidence=IGI] [GO:0001570
            "vasculogenesis" evidence=IBA] [GO:0001654 "eye development"
            evidence=ISO;IMP] [GO:0001656 "metanephros development"
            evidence=IBA] [GO:0001657 "ureteric bud development" evidence=IMP]
            [GO:0001701 "in utero embryonic development" evidence=IMP]
            [GO:0001756 "somitogenesis" evidence=IGI] [GO:0001822 "kidney
            development" evidence=IMP] [GO:0001945 "lymph vessel development"
            evidence=IGI] [GO:0001946 "lymphangiogenesis" evidence=IBA]
            [GO:0001974 "blood vessel remodeling" evidence=IGI] [GO:0003007
            "heart morphogenesis" evidence=IGI] [GO:0003677 "DNA binding"
            evidence=ISO] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO;IDA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IDA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISO] [GO:0007219 "Notch signaling pathway" evidence=IGI]
            [GO:0007420 "brain development" evidence=IMP] [GO:0007507 "heart
            development" evidence=IGI;ISO;IMP] [GO:0008134 "transcription
            factor binding" evidence=ISO;IBA] [GO:0008301 "DNA binding,
            bending" evidence=ISO;IBA] [GO:0008354 "germ cell migration"
            evidence=IMP] [GO:0014032 "neural crest cell development"
            evidence=IGI] [GO:0014034 "neural crest cell fate commitment"
            evidence=IBA] [GO:0030199 "collagen fibril organization"
            evidence=IMP] [GO:0030203 "glycosaminoglycan metabolic process"
            evidence=IMP] [GO:0031490 "chromatin DNA binding" evidence=IBA]
            [GO:0032808 "lacrimal gland development" evidence=IMP] [GO:0035050
            "embryonic heart tube development" evidence=IGI] [GO:0042475
            "odontogenesis of dentin-containing tooth" evidence=ISO;IBA]
            [GO:0043010 "camera-type eye development" evidence=IMP] [GO:0043066
            "negative regulation of apoptotic process" evidence=IGI]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISO]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=IDA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0045930 "negative regulation of
            mitotic cell cycle" evidence=ISO;IBA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISO;IDA] [GO:0046620 "regulation of organ growth"
            evidence=IGI] [GO:0048010 "vascular endothelial growth factor
            receptor signaling pathway" evidence=IGI] [GO:0048341 "paraxial
            mesoderm formation" evidence=IGI] [GO:0048343 "paraxial mesodermal
            cell fate commitment" evidence=IBA] [GO:0048762 "mesenchymal cell
            differentiation" evidence=IMP] [GO:0048844 "artery morphogenesis"
            evidence=IMP] [GO:0050880 "regulation of blood vessel size"
            evidence=IGI] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0055010
            "ventricular cardiac muscle tissue morphogenesis" evidence=IGI]
            [GO:0060038 "cardiac muscle cell proliferation" evidence=IGI]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            MGI:MGI:1347466 GO:GO:0005737 GO:GO:0043066 GO:GO:0007420
            GO:GO:0043565 GO:GO:0001701 GO:GO:0005720 GO:GO:0030199
            GO:GO:0045944 GO:GO:0007219 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0000122 GO:GO:0008301
            GO:GO:0001756 GO:GO:0043010 GO:GO:0044212 GO:GO:0001501
            GO:GO:0001974 GO:GO:0003690 GO:GO:0001541 GO:GO:0001946
            GO:GO:0001570 GO:GO:0042475 GO:GO:0008134 GO:GO:0014032
            GO:GO:0050880 GO:GO:0001503 GO:GO:0048844 GO:GO:0031490
            GO:GO:0001656 GO:GO:0001657 GO:GO:0051090 GO:GO:0046620
            GO:GO:0048010 GO:GO:0045930 GO:GO:0060038 GO:GO:0055010
            GO:GO:0030203 eggNOG:COG5025 KO:K09396 GO:GO:0035050 GO:GO:0008354
            GeneTree:ENSGT00690000101636 GO:GO:0032808 CTD:2296
            HOVERGEN:HBG051640 OMA:QRIGLNN GO:GO:0014034 GO:GO:0048343
            EMBL:AF045017 EMBL:AJ223298 EMBL:AK144420 EMBL:BC052011 EMBL:X71939
            EMBL:L10406 IPI:IPI00122483 PIR:I49674 RefSeq:NP_032618.2
            UniGene:Mm.12949 ProteinModelPortal:Q61572 SMR:Q61572 IntAct:Q61572
            STRING:Q61572 PhosphoSite:Q61572 PRIDE:Q61572
            Ensembl:ENSMUST00000062292 GeneID:17300 KEGG:mmu:17300
            HOGENOM:HOG000007939 InParanoid:Q9QWR9 NextBio:291834 Bgee:Q61572
            CleanEx:MM_FOXC1 Genevestigator:Q61572
            GermOnline:ENSMUSG00000050295 Uniprot:Q61572
        Length = 553

 Score = 189 (71.6 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 52/159 (32%), Positives = 79/159 (49%)

Query:    51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A++     ++T++GIYQ+I +RFP+Y  N   W+NS+RHNLS+N  F 
Sbjct:    78 KPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIRHNLSLNECFV 137

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTE 165
             K  +  +  G G  W L  D   + +      ++ R K   ++++  E   +    +  E
Sbjct:   138 KVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKK-DAVKDKE---EKGRLHLQE 193

Query:   166 TPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKT 204
              P P     P P P P      A  P QP  V  Q+ KT
Sbjct:   194 PPPPQAGRQPAPAP-PEQAEGSAPGP-QPPPVRIQDIKT 230


>UNIPROTKB|H9L1F8 [details] [associations]
            symbol:H9L1F8 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0048663 "neuron fate commitment" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GeneTree:ENSGT00700000104051 EMBL:AADN02061683
            Ensembl:ENSGALT00000035515 Uniprot:H9L1F8
        Length = 113

 Score = 167 (63.8 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 42/110 (38%), Positives = 58/110 (52%)

Query:    47 KTHRKPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K + KP ++Y+ LI  ALK      L VS IY ++ E FPY+    D WKNSVRHNLS+N
Sbjct:     2 KHYPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNSVRHNLSLN 61

Query:   105 PHFRKGVKASQGA---GHLW--NLSDMEPVEDASKSNWKKNRLKTYLESL 149
               F K      G    G LW  N + ++ +E+  +  WK+  L     S+
Sbjct:    62 KCFEKVENKMSGTSRKGCLWALNPAKIDKMEEEMQK-WKRKDLAAIHRSM 110


>ZFIN|ZDB-GENE-010302-2 [details] [associations]
            symbol:foxc1b "forkhead box C1b" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0043114 "regulation of vascular
            permeability" evidence=IGI] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0048010 "vascular endothelial growth factor receptor signaling
            pathway" evidence=IBA] [GO:0001656 "metanephros development"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0001756 "somitogenesis" evidence=IBA] [GO:0001503
            "ossification" evidence=IBA] [GO:0031490 "chromatin DNA binding"
            evidence=IBA] [GO:0048844 "artery morphogenesis" evidence=IBA]
            [GO:0048343 "paraxial mesodermal cell fate commitment"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0055010 "ventricular cardiac muscle tissue
            morphogenesis" evidence=IBA] [GO:0005667 "transcription factor
            complex" evidence=IBA] [GO:0014034 "neural crest cell fate
            commitment" evidence=IBA] [GO:0060038 "cardiac muscle cell
            proliferation" evidence=IBA] [GO:0007219 "Notch signaling pathway"
            evidence=IBA] [GO:0035050 "embryonic heart tube development"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0046620 "regulation of organ growth"
            evidence=IBA] [GO:0001946 "lymphangiogenesis" evidence=IBA]
            [GO:0001974 "blood vessel remodeling" evidence=IBA] [GO:0030199
            "collagen fibril organization" evidence=IBA] [GO:0001657 "ureteric
            bud development" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0050880 "regulation of blood vessel size"
            evidence=IBA] [GO:0043010 "camera-type eye development"
            evidence=IGI] [GO:0001568 "blood vessel development" evidence=IGI]
            [GO:0001944 "vasculature development" evidence=IGI;IMP] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-010302-2 GO:GO:0043565 GO:GO:0030199 GO:GO:0045944
            GO:GO:0007219 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0001756 GO:GO:0043010
            GO:GO:0001974 GO:GO:0003690 GO:GO:0001946 GO:GO:0008134
            GO:GO:0050880 GO:GO:0001503 GO:GO:0048844 GO:GO:0031490
            GO:GO:0001656 GO:GO:0001657 GO:GO:0051090 GO:GO:0046620
            GO:GO:0048010 GO:GO:0060038 GO:GO:0055010 eggNOG:COG5025
            GO:GO:0035050 HSSP:Q99958 GeneTree:ENSGT00690000101636
            HOVERGEN:HBG051640 OMA:QRIGLNN GO:GO:0014034 GO:GO:0048343
            HOGENOM:HOG000007939 OrthoDB:EOG4MCX19 EMBL:AF219950 EMBL:BX510653
            EMBL:BC046028 IPI:IPI00493033 RefSeq:NP_571804.1 UniGene:Dr.83301
            ProteinModelPortal:Q9DE24 SMR:Q9DE24 STRING:Q9DE24
            Ensembl:ENSDART00000077753 GeneID:79375 KEGG:dre:79375 CTD:79375
            InParanoid:Q9DE24 NextBio:20931552 Bgee:Q9DE24 Uniprot:Q9DE24
        Length = 433

 Score = 187 (70.9 bits), Expect = 4.7e-12, P = 4.7e-12
 Identities = 56/204 (27%), Positives = 92/204 (45%)

Query:    15 GQFSPMEPCQTSSHKPEPS-QSEVEDRCCPSHA-KTHRKPPFTYTELIEQALKEKH--QL 70
             G  +PM     ++H+  P   +       P+   K   KPP++Y  LI  A++     ++
Sbjct:    36 GMPAPMSMYSHATHEQYPGGMARAYGPYAPAQQPKDMVKPPYSYIALITMAIQNSSDKKI 95

Query:    71 TVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNLSDMEP 128
             T++GIYQ+I ERFP+Y  N   W+NS+RHNLS+N  F K  +  +  G G  W L D + 
Sbjct:    96 TLNGIYQFIMERFPFYRDNKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTL-DPDS 154

Query:   129 VEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQPLNTMSLA 188
                    ++ + R +   + +   +   D  G+++   P  + E   Q QP  L  +   
Sbjct:   155 YNMFENGSFLRRRRRFKKKDVLREKEDRDRQGKDN---PGQACEQDAQ-QPVKLRDIKTE 210

Query:   189 HDPLQPFEVYSQESKTFPYEECKD 212
             +    P    +    T P  E  D
Sbjct:   211 NGACTPPHDSTPPLSTVPKTESPD 234


>RGD|1589718 [details] [associations]
            symbol:Foxc1 "forkhead box C1" species:10116 "Rattus norvegicus"
            [GO:0001501 "skeletal system development" evidence=ISO] [GO:0001503
            "ossification" evidence=ISO] [GO:0001541 "ovarian follicle
            development" evidence=ISO] [GO:0001568 "blood vessel development"
            evidence=ISO] [GO:0001654 "eye development" evidence=ISO]
            [GO:0001657 "ureteric bud development" evidence=ISO] [GO:0001701
            "in utero embryonic development" evidence=ISO] [GO:0001756
            "somitogenesis" evidence=ISO] [GO:0001822 "kidney development"
            evidence=ISO] [GO:0001945 "lymph vessel development" evidence=ISO]
            [GO:0001974 "blood vessel remodeling" evidence=ISO] [GO:0003007
            "heart morphogenesis" evidence=ISO] [GO:0003677 "DNA binding"
            evidence=ISO] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0007219 "Notch
            signaling pathway" evidence=ISO] [GO:0007420 "brain development"
            evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
            [GO:0008134 "transcription factor binding" evidence=ISO]
            [GO:0008301 "DNA binding, bending" evidence=ISO] [GO:0008354 "germ
            cell migration" evidence=ISO] [GO:0014032 "neural crest cell
            development" evidence=ISO] [GO:0030199 "collagen fibril
            organization" evidence=ISO] [GO:0030203 "glycosaminoglycan
            metabolic process" evidence=ISO] [GO:0032808 "lacrimal gland
            development" evidence=ISO] [GO:0035050 "embryonic heart tube
            development" evidence=ISO] [GO:0042475 "odontogenesis of
            dentin-containing tooth" evidence=ISO] [GO:0043010 "camera-type eye
            development" evidence=ISO] [GO:0043066 "negative regulation of
            apoptotic process" evidence=ISO] [GO:0043565 "sequence-specific DNA
            binding" evidence=ISO] [GO:0044212 "transcription regulatory region
            DNA binding" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0045930 "negative
            regulation of mitotic cell cycle" evidence=ISO] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0046620 "regulation of organ growth"
            evidence=ISO] [GO:0048010 "vascular endothelial growth factor
            receptor signaling pathway" evidence=ISO] [GO:0048341 "paraxial
            mesoderm formation" evidence=ISO] [GO:0048762 "mesenchymal cell
            differentiation" evidence=ISO] [GO:0048844 "artery morphogenesis"
            evidence=ISO] [GO:0050880 "regulation of blood vessel size"
            evidence=ISO] [GO:0055010 "ventricular cardiac muscle tissue
            morphogenesis" evidence=ISO] [GO:0060038 "cardiac muscle cell
            proliferation" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            REFSEQ:XM_002725235 Ncbi:XP_002725281
        Length = 788

 Score = 191 (72.3 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 52/159 (32%), Positives = 79/159 (49%)

Query:    51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A++     ++T++GIYQ+I +RFP+Y  N   W+NS+RHNLS+N  F 
Sbjct:   336 KPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIRHNLSLNECFV 395

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTE 165
             K  +  +  G G  W L  D   + +      ++ R K   ++++  E   +    +  E
Sbjct:   396 KVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKK-DAVKDKE---EKGRLHLQE 451

Query:   166 TPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKT 204
              P P     P P P P      A  P QP  V  Q+ KT
Sbjct:   452 PPPPQAGRQPAPAP-PEQAEGSAPGPQQP-PVRIQDIKT 488


>RGD|1561816 [details] [associations]
            symbol:Foxi3 "forkhead box I3" species:10116 "Rattus norvegicus"
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009957 "epidermal cell fate specification"
            evidence=IBA] [GO:0043049 "otic placode formation" evidence=IBA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 RGD:1561816
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 EMBL:CH473957 GO:GO:0043049
            GO:GO:0009957 GeneTree:ENSGT00690000101636 KO:K09401
            OrthoDB:EOG457573 CTD:344167 IPI:IPI00188027 RefSeq:NP_001102819.1
            UniGene:Rn.218636 Ensembl:ENSRNOT00000008494 GeneID:502846
            KEGG:rno:502846 UCSC:RGD:1561816 NextBio:712574 Uniprot:D3ZLN2
        Length = 400

 Score = 186 (70.5 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 48/154 (31%), Positives = 77/154 (50%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A++   + +LT+S IYQ++++ FP+Y ++   W+NS+RHNLS+N  F+
Sbjct:   131 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADNFPFYQRSKAGWQNSIRHNLSLNDCFK 190

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNST- 164
             K  +     G G+ W L  + E + D      K+ R      +L          GQ+S  
Sbjct:   191 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRRRRAEASSNLTVPSGTSKSDGQSSRL 250

Query:   165 ------ETPAPSMETMPQPQPQPLN-TMSLAHDP 191
                   E  +PS    P   P+P   T S A  P
Sbjct:   251 RVSGKLEGDSPSSMLRPSQSPEPPEGTKSTASSP 284


>UNIPROTKB|Q91904 [details] [associations]
            symbol:foxi1-a "Forkhead box protein I1-A" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=IDA] [GO:0007398
            "ectoderm development" evidence=IMP] [GO:0043565 "sequence-specific
            DNA binding" evidence=IDA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0048264
            "determination of ventral identity" evidence=IMP]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0045893 GO:GO:0007399 GO:GO:0030154
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0048264 GO:GO:0007398 HSSP:Q99958
            HOVERGEN:HBG067944 EMBL:X74315 EMBL:BC080044 PIR:S49008
            RefSeq:NP_001081617.1 UniGene:Xl.5369 ProteinModelPortal:Q91904
            SMR:Q91904 GeneID:397954 KEGG:xla:397954 CTD:397954
            Xenbase:XB-GENE-865722 Uniprot:Q91904
        Length = 370

 Score = 185 (70.2 bits), Expect = 5.2e-12, P = 5.2e-12
 Identities = 48/155 (30%), Positives = 87/155 (56%)

Query:    51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  +++     +LT+S IYQ+++E FP+Y ++   W+NS+RHNLS+N  F+
Sbjct:   127 RPPYSYSALIAMSIQNATDKRLTLSQIYQYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 186

Query:   109 KGVKASQ--GAGHLWNL-SDMEPVEDASKSNWKKNRL-KTYLESLQPSEWGDDYSGQNST 164
             K  +     G G+ W L S+ E + D    N+++ R  K+   +++ ++  +D+      
Sbjct:   187 KMPRDENDPGKGNYWTLDSNCEKMFD--NGNFRRKRKPKSETNNIKIAKREEDHVSPKGK 244

Query:   165 ETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYS 199
             E+P P M T P   P+ L+    +  P  P   Y+
Sbjct:   245 ESP-P-MIT-PS-SPKELSPTGHSKCPSPPTVTYT 275


>UNIPROTKB|Q6NVT7 [details] [associations]
            symbol:foxc2 "Forkhead box protein C2" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0001503 "ossification"
            evidence=IBA] [GO:0001569 "patterning of blood vessels"
            evidence=IBA] [GO:0001570 "vasculogenesis" evidence=IBA]
            [GO:0001656 "metanephros development" evidence=IBA] [GO:0001657
            "ureteric bud development" evidence=IBA] [GO:0001756
            "somitogenesis" evidence=IBA] [GO:0001946 "lymphangiogenesis"
            evidence=ISS;IBA] [GO:0001974 "blood vessel remodeling"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007219 "Notch
            signaling pathway" evidence=IBA] [GO:0007498 "mesoderm development"
            evidence=ISS] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008286 "insulin receptor signaling pathway"
            evidence=ISS;IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009725 "response to hormone stimulus" evidence=ISS]
            [GO:0014034 "neural crest cell fate commitment" evidence=IBA]
            [GO:0030199 "collagen fibril organization" evidence=IBA]
            [GO:0031490 "chromatin DNA binding" evidence=ISS;IBA] [GO:0035050
            "embryonic heart tube development" evidence=IBA] [GO:0043010
            "camera-type eye development" evidence=IBA] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0046620 "regulation of
            organ growth" evidence=IBA] [GO:0048010 "vascular endothelial
            growth factor receptor signaling pathway" evidence=IBA] [GO:0048343
            "paraxial mesodermal cell fate commitment" evidence=IBA]
            [GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IBA]
            [GO:0048844 "artery morphogenesis" evidence=IBA] [GO:0050880
            "regulation of blood vessel size" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0055010 "ventricular cardiac muscle
            tissue morphogenesis" evidence=IBA] [GO:0060038 "cardiac muscle
            cell proliferation" evidence=IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0008286
            GO:GO:0043565 GO:GO:0030199 GO:GO:0045944 GO:GO:0007219
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0001756 GO:GO:0043010 GO:GO:0001974
            GO:GO:0003690 GO:GO:0001946 GO:GO:0001569 GO:GO:0001570
            GO:GO:0008134 GO:GO:0050880 GO:GO:0001503 GO:GO:0048844
            GO:GO:0031490 GO:GO:0001656 GO:GO:0001657 GO:GO:0051090
            GO:GO:0046620 GO:GO:0048010 GO:GO:0060038 GO:GO:0055010
            GO:GO:0048703 eggNOG:COG5025 KO:K09396 GO:GO:0035050 HSSP:Q99958
            GeneTree:ENSGT00690000101636 HOVERGEN:HBG051640 GO:GO:0014034
            GO:GO:0048343 HOGENOM:HOG000007939 OrthoDB:EOG4MCX19 CTD:2303
            EMBL:CR762327 EMBL:BC067916 RefSeq:NP_998857.1 UniGene:Str.2696
            ProteinModelPortal:Q6NVT7 SMR:Q6NVT7 STRING:Q6NVT7
            Ensembl:ENSXETT00000035768 GeneID:407875 KEGG:xtr:407875
            Xenbase:XB-GENE-481382 InParanoid:Q6NVT7 OMA:ARYSVAD Bgee:Q6NVT7
            Uniprot:Q6NVT7
        Length = 464

 Score = 187 (70.9 bits), Expect = 5.5e-12, P = 5.5e-12
 Identities = 43/138 (31%), Positives = 73/138 (52%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P+  K   KPP++Y  LI  A++     ++T++GIYQ+I +RFP+Y +N   W+NS+RHN
Sbjct:    64 PAAPKDLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHN 123

Query:   101 LSINPHFRKGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDY 158
             LS+N  F K  +  +  G G  W L D +        ++ + R +   + +   +     
Sbjct:   124 LSLNECFVKVPRDDKKPGKGSYWTL-DPDSYNMFENGSFLRRRRRFKKKDVSREKEDRIL 182

Query:   159 SGQNSTETPAPSMETMPQ 176
               Q   + P PS+E +P+
Sbjct:   183 KDQGKVQGPIPSLE-LPK 199


>UNIPROTKB|G3V3A7 [details] [associations]
            symbol:FOXN3 "Forkhead box protein N3" species:9606 "Homo
            sapiens" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 EMBL:AL138478 EMBL:AL356805
            EMBL:AL357093 HGNC:HGNC:1928 ChiTaRS:FOXN3 EMBL:AL137230
            EMBL:AL137785 EMBL:AL157736 EMBL:AL163032 ProteinModelPortal:G3V3A7
            SMR:G3V3A7 Ensembl:ENST00000555855 ArrayExpress:G3V3A7 Bgee:G3V3A7
            Uniprot:G3V3A7
        Length = 208

 Score = 166 (63.5 bits), Expect = 6.0e-12, P = 6.0e-12
 Identities = 41/109 (37%), Positives = 60/109 (55%)

Query:    18 SPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEK--HQLTVSGI 75
             SP++     +  P P+ S++      +    + KPP++++ LI  A+++    +L V  I
Sbjct:    85 SPVQDLDDDT-PPSPAHSDMP---YDARQNPNCKPPYSFSCLIFMAIEDSPTKRLPVKDI 140

Query:    76 YQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA-SQ--GAGHLW 121
             Y WI E FPY+      WKNSVRHNLS+N  F+K  K  SQ  G G LW
Sbjct:   141 YNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERSQSIGKGSLW 189


>UNIPROTKB|Q6Q2B1 [details] [associations]
            symbol:foxk1 "Forkhead box protein K1 isoform alpha"
            species:31033 "Takifugu rubripes" [GO:0000287 "magnesium ion
            binding" evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0009888 "tissue
            development" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] InterPro:IPR000253 InterPro:IPR001766
            InterPro:IPR008984 InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006
            PROSITE:PS50039 SMART:SM00240 SMART:SM00339 GO:GO:0000287
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991
            Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 GO:GO:0009888 HSSP:Q01167
            HOGENOM:HOG000072588 EMBL:AY566278 UniGene:Tru.2000
            ProteinModelPortal:Q6Q2B1 InParanoid:Q6Q2B1 Uniprot:Q6Q2B1
        Length = 558

 Score = 188 (71.2 bits), Expect = 6.1e-12, P = 6.1e-12
 Identities = 40/93 (43%), Positives = 56/93 (60%)

Query:    47 KTHRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K   KPP++Y +LI QA+      QLT+SGIY  I++ +PYY   D  W+NS+RHNLS+N
Sbjct:   283 KDESKPPYSYAQLIVQAISSAPDKQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLN 342

Query:   105 PHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
              +F K  ++    G G  W L   S+ + VE A
Sbjct:   343 RYFLKVARSQDEPGKGSFWRLDSASESKLVEQA 375


>UNIPROTKB|J9NRI9 [details] [associations]
            symbol:FOXK1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000253
            InterPro:IPR001766 InterPro:IPR008984 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF00498 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50006 PROSITE:PS50039 SMART:SM00240
            SMART:SM00339 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 SUPFAM:SSF49879 GeneTree:ENSGT00700000104094
            EMBL:AAEX03004309 EMBL:AAEX03004310 Ensembl:ENSCAFT00000044839
            Uniprot:J9NRI9
        Length = 601

 Score = 188 (71.2 bits), Expect = 7.0e-12, P = 7.0e-12
 Identities = 39/93 (41%), Positives = 58/93 (62%)

Query:    47 KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K   KPP++Y +LI QA+   +  QLT+SGIY  I++ +PYY   D  W+NS+RHNLS+N
Sbjct:   174 KDESKPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLN 233

Query:   105 PHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
              +F K  ++ +  G G  W +   S+ + VE A
Sbjct:   234 RYFIKVPRSQEEPGKGSFWRIDPASEAKLVEQA 266


>UNIPROTKB|F1RI50 [details] [associations]
            symbol:FOXK1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0030308 "negative
            regulation of cell growth" evidence=IEA] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR000253 InterPro:IPR001766
            InterPro:IPR008984 InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006
            PROSITE:PS50039 SMART:SM00240 SMART:SM00339 GO:GO:0045892
            GO:GO:0045893 GO:GO:0005730 GO:GO:0030308 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006357
            Gene3D:2.60.200.20 SUPFAM:SSF49879 GeneTree:ENSGT00700000104094
            OMA:CEVGPKE EMBL:CU928310 Ensembl:ENSSSCT00000008315 Uniprot:F1RI50
        Length = 625

 Score = 188 (71.2 bits), Expect = 7.4e-12, P = 7.4e-12
 Identities = 39/93 (41%), Positives = 58/93 (62%)

Query:    47 KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K   KPP++Y +LI QA+   +  QLT+SGIY  I++ +PYY   D  W+NS+RHNLS+N
Sbjct:   187 KDESKPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLN 246

Query:   105 PHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
              +F K  ++ +  G G  W +   S+ + VE A
Sbjct:   247 RYFIKVPRSQEEPGKGSFWRIDPASEAKLVEQA 279


>UNIPROTKB|G3N143 [details] [associations]
            symbol:FOXN3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0045892 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00700000104051 OMA:KHINSKP EMBL:DAAA02030019
            EMBL:DAAA02030020 EMBL:DAAA02030021 EMBL:DAAA02030022
            EMBL:DAAA02030023 EMBL:DAAA02030024 EMBL:DAAA02030025
            EMBL:DAAA02030026 Ensembl:ENSBTAT00000065076 Uniprot:G3N143
        Length = 205

 Score = 165 (63.1 bits), Expect = 7.8e-12, P = 7.8e-12
 Identities = 39/101 (38%), Positives = 55/101 (54%)

Query:    20 MEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEK--HQLTVSGIYQ 77
             + P Q     P PS +   D    +    + KPP++++ LI  A+++    +L V  IY 
Sbjct:    84 VSPVQDPDDDPPPSPAH-SDVPYDARQNPNCKPPYSFSCLIFMAIEDSPTKRLPVKDIYN 142

Query:    78 WISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA-SQGA 117
             WI E FPY+      WKNSVRHNLS+N  F+K  K  SQG+
Sbjct:   143 WILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERSQGS 183


>RGD|621712 [details] [associations]
            symbol:Foxd1 "forkhead box D1" species:10116 "Rattus norvegicus"
            [GO:0001658 "branching involved in ureteric bud morphogenesis"
            evidence=ISO] [GO:0001755 "neural crest cell migration"
            evidence=IBA] [GO:0001822 "kidney development" evidence=ISO]
            [GO:0003677 "DNA binding" evidence=ISO] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0007411 "axon guidance"
            evidence=ISO] [GO:0007422 "peripheral nervous system development"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=ISO;IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0010628
            "positive regulation of gene expression" evidence=ISO;ISS]
            [GO:0030318 "melanocyte differentiation" evidence=IBA] [GO:0030513
            "positive regulation of BMP signaling pathway"
            evidence=ISO;ISS;IBA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA;ISO] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO;IBA] [GO:0048484 "enteric nervous system
            development" evidence=IBA] [GO:0048485 "sympathetic nervous system
            development" evidence=IBA] [GO:0048846 "axon extension involved in
            axon guidance" evidence=IBA] [GO:0048937 "lateral line nerve glial
            cell development" evidence=IBA] [GO:0050935 "iridophore
            differentiation" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0051216 "cartilage development" evidence=IBA]
            [GO:0060678 "dichotomous subdivision of terminal units involved in
            ureteric bud branching" evidence=ISO;ISS;IBA] [GO:0072076
            "nephrogenic mesenchyme development" evidence=IEA;ISO] [GO:0072210
            "metanephric nephron development" evidence=IEA;ISO] [GO:0072213
            "metanephric capsule development" evidence=ISO;ISS] [GO:0072267
            "metanephric capsule specification" evidence=ISO;ISS] [GO:0072268
            "pattern specification involved in metanephros development"
            evidence=ISO] [GO:0090184 "positive regulation of kidney
            development" evidence=ISO;ISS;IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 RGD:621712
            GO:GO:0045892 GO:GO:0001755 GO:GO:0043565 GO:GO:0045944
            GO:GO:0007422 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0009790 GO:GO:0003690
            GO:GO:0030513 GO:GO:0051216 GO:GO:0008134 GO:GO:0048485
            GO:GO:0030318 GO:GO:0048484 GO:GO:0051090 GO:GO:0090184
            GO:GO:0048846 eggNOG:COG5025 GO:GO:0048937 GO:GO:0060678
            GO:GO:0050935 GO:GO:0072267 HOGENOM:HOG000231285 EMBL:L13192
            IPI:IPI00551801 PIR:I60922 UniGene:Rn.50822
            ProteinModelPortal:Q63251 SMR:Q63251 STRING:Q63251 UCSC:RGD:621712
            InParanoid:Q63251 ArrayExpress:Q63251 Genevestigator:Q63251
            GermOnline:ENSRNOG00000007759 Uniprot:Q63251
        Length = 101

 Score = 165 (63.1 bits), Expect = 7.8e-12, P = 7.8e-12
 Identities = 37/95 (38%), Positives = 56/95 (58%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+ +  K +LT+S I ++IS RFPYY +    W+NS+RHNLS+N  F 
Sbjct:     3 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFV 62

Query:   109 KGVK--ASQGAGHLWNLSDMEPVEDASKSNWKKNR 141
             K  +   + G G+ W L D E  +     ++ + R
Sbjct:    63 KIPREPGNPGKGNYWTL-DPESADMFDNGSFLRRR 96


>RGD|621739 [details] [associations]
            symbol:Foxi2 "forkhead box I2" species:10116 "Rattus norvegicus"
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA;TAS] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009957 "epidermal cell fate specification"
            evidence=IBA] [GO:0043049 "otic placode formation" evidence=IBA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 RGD:621739
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 GO:GO:0043049 eggNOG:COG5025
            GO:GO:0009957 HOGENOM:HOG000236333 OrthoDB:EOG457573 EMBL:L13205
            IPI:IPI00366083 PIR:I60919 UniGene:Rn.92429
            ProteinModelPortal:Q63248 SMR:Q63248 STRING:Q63248
            PhosphoSite:Q63248 PRIDE:Q63248 UCSC:RGD:621739 InParanoid:Q63248
            ArrayExpress:Q63248 Genevestigator:Q63248
            GermOnline:ENSRNOG00000018917 Uniprot:Q63248
        Length = 101

 Score = 165 (63.1 bits), Expect = 7.8e-12, P = 7.8e-12
 Identities = 34/96 (35%), Positives = 59/96 (61%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A++   + +LT+S IYQ+++  FP+Y +    W+NS+RHNLS+N  F+
Sbjct:     3 RPPYSYSALIAMAIQSAPRRRLTLSQIYQYVAGNFPFYKRTKAGWQNSIRHNLSLNDCFK 62

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNR 141
             K  +     G G+ W L  + E + D    N+++ R
Sbjct:    63 KVPRDENDPGKGNYWMLDPNCEKMFD--NGNFRRKR 96


>UNIPROTKB|Q63248 [details] [associations]
            symbol:Foxi2 "Forkhead box protein I2" species:10116
            "Rattus norvegicus" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 RGD:621739 GO:GO:0043565 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0003690 GO:GO:0008134 GO:GO:0007389 GO:GO:0051090
            GO:GO:0043049 eggNOG:COG5025 GO:GO:0009957 HOGENOM:HOG000236333
            OrthoDB:EOG457573 EMBL:L13205 IPI:IPI00366083 PIR:I60919
            UniGene:Rn.92429 ProteinModelPortal:Q63248 SMR:Q63248 STRING:Q63248
            PhosphoSite:Q63248 PRIDE:Q63248 UCSC:RGD:621739 InParanoid:Q63248
            ArrayExpress:Q63248 Genevestigator:Q63248
            GermOnline:ENSRNOG00000018917 Uniprot:Q63248
        Length = 101

 Score = 165 (63.1 bits), Expect = 7.8e-12, P = 7.8e-12
 Identities = 34/96 (35%), Positives = 59/96 (61%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A++   + +LT+S IYQ+++  FP+Y +    W+NS+RHNLS+N  F+
Sbjct:     3 RPPYSYSALIAMAIQSAPRRRLTLSQIYQYVAGNFPFYKRTKAGWQNSIRHNLSLNDCFK 62

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNR 141
             K  +     G G+ W L  + E + D    N+++ R
Sbjct:    63 KVPRDENDPGKGNYWMLDPNCEKMFD--NGNFRRKR 96


>POMBASE|SPBC4C3.12 [details] [associations]
            symbol:sep1 "fork head transcription factor Sep1"
            species:4896 "Schizosaccharomyces pombe" [GO:0000978 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding" evidence=IDA] [GO:0000982 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity" evidence=IC] [GO:0001077 "RNA polymerase II core promoter
            proximal region sequence-specific DNA binding transcription factor
            activity involved in positive regulation of transcription"
            evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0005667
            "transcription factor complex" evidence=IC] [GO:0045896 "regulation
            of transcription during mitosis" evidence=IGI;IMP] [GO:0097221
            "MADS box-forkhead transcription factor complex" evidence=IDA]
            [GO:1900405 "regulation of cytokinetic cell separation by
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP] [GO:1901037 "regulation of transcription from RNA
            polymerase II promoter during M/G1 transition of mitotic cell
            cycle" evidence=IC] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 PomBase:SPBC4C3.12 EMBL:CU329671
            Gene3D:1.10.10.10 InterPro:IPR011991 GenomeReviews:CU329671_GR
            GO:GO:0000978 GO:GO:0001077 GO:GO:1900405 GO:GO:0045896
            GO:GO:0000917 eggNOG:COG5025 GO:GO:0097221 GO:GO:1901037
            OrthoDB:EOG4XKZH6 EMBL:U88191 PIR:JC6500 PIR:T40493
            RefSeq:NP_596301.1 ProteinModelPortal:O43058 STRING:O43058
            EnsemblFungi:SPBC4C3.12.1 GeneID:2540866 KEGG:spo:SPBC4C3.12
            NextBio:20801982 Uniprot:O43058
        Length = 663

 Score = 188 (71.2 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 43/124 (34%), Positives = 69/124 (55%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQS-EVEDRCCPSHAKTHRKPPFTYTELIEQA 63
             S+ P+ + PP + S ++     +     SQS E E+   P      +KPP++Y  LI  +
Sbjct:    84 SVPPLPIPPPSEQS-LDTIIYRNPSVSSSQSQEPEEFFLP--LDDGKKPPYSYAMLIGMS 140

Query:    64 L--KEKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGH 119
             +      +LT+S IY WIS  F +YN++++ W+NS+RHNLS+N  F K  +     G GH
Sbjct:   141 IIRSPDRRLTLSAIYDWISNTFSFYNKSNNGWQNSIRHNLSLNKAFMKIERPRNLPGKGH 200

Query:   120 LWNL 123
              W++
Sbjct:   201 FWSI 204


>UNIPROTKB|F1Q2J8 [details] [associations]
            symbol:FOXK1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] InterPro:IPR000253
            InterPro:IPR001766 InterPro:IPR008984 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF00498 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50006 PROSITE:PS50039 SMART:SM00240
            SMART:SM00339 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 Gene3D:2.60.200.20 SUPFAM:SSF49879
            GeneTree:ENSGT00700000104094 EMBL:AAEX03004309 EMBL:AAEX03004310
            Ensembl:ENSCAFT00000025556 Uniprot:F1Q2J8
        Length = 674

 Score = 188 (71.2 bits), Expect = 8.4e-12, P = 8.4e-12
 Identities = 39/93 (41%), Positives = 58/93 (62%)

Query:    47 KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K   KPP++Y +LI QA+   +  QLT+SGIY  I++ +PYY   D  W+NS+RHNLS+N
Sbjct:   247 KDESKPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLN 306

Query:   105 PHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
              +F K  ++ +  G G  W +   S+ + VE A
Sbjct:   307 RYFIKVPRSQEEPGKGSFWRIDPASEAKLVEQA 339


>UNIPROTKB|F1MP14 [details] [associations]
            symbol:F1MP14 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0030308 "negative
            regulation of cell growth" evidence=IEA] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR000253 InterPro:IPR001766
            InterPro:IPR008984 InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006
            PROSITE:PS50039 SMART:SM00240 SMART:SM00339 GO:GO:0045892
            GO:GO:0045893 GO:GO:0005730 GO:GO:0030308 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006357
            Gene3D:2.60.200.20 SUPFAM:SSF49879 GeneTree:ENSGT00700000104094
            OMA:CEVGPKE EMBL:DAAA02058363 EMBL:DAAA02058364 IPI:IPI00701447
            Ensembl:ENSBTAT00000025710 Uniprot:F1MP14
        Length = 707

 Score = 188 (71.2 bits), Expect = 9.1e-12, P = 9.1e-12
 Identities = 39/93 (41%), Positives = 58/93 (62%)

Query:    47 KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K   KPP++Y +LI QA+   +  QLT+SGIY  I++ +PYY   D  W+NS+RHNLS+N
Sbjct:   283 KDESKPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLN 342

Query:   105 PHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
              +F K  ++ +  G G  W +   S+ + VE A
Sbjct:   343 RYFIKVPRSQEEPGKGSFWRIDPASEAKLVEQA 375


>MGI|MGI:1347488 [details] [associations]
            symbol:Foxk1 "forkhead box K1" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0000287 "magnesium ion
            binding" evidence=IBA] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IC] [GO:0005667 "transcription
            factor complex" evidence=IBA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
            of transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0007517 "muscle organ development" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0009790 "embryo development"
            evidence=IBA] [GO:0009888 "tissue development" evidence=IBA]
            [GO:0030154 "cell differentiation" evidence=IEA] [GO:0030308
            "negative regulation of cell growth" evidence=IDA] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] [GO:0045786 "negative
            regulation of cell cycle" evidence=TAS] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA]
            InterPro:IPR000253 InterPro:IPR001766 InterPro:IPR008984
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006 PROSITE:PS50039
            SMART:SM00240 SMART:SM00339 MGI:MGI:1347488 GO:GO:0045892
            GO:GO:0045893 GO:GO:0030154 GO:GO:0005730 GO:GO:0030308
            GO:GO:0000287 GO:GO:0003677 GO:GO:0043565 Gene3D:1.10.10.10
            InterPro:IPR011991 Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0005667
            GO:GO:0003705 GO:GO:0000122 GO:GO:0008301 GO:GO:0009790
            GO:GO:0007517 GO:GO:0003690 GO:GO:0008134 GO:GO:0007389
            GO:GO:0045786 GO:GO:0051090 eggNOG:COG5025 GO:GO:0009888
            GeneTree:ENSGT00700000104094 CTD:221937 HOGENOM:HOG000072588
            HOVERGEN:HBG051649 KO:K09404 OMA:CEVGPKE ChiTaRS:FOXK1 EMBL:L26507
            EMBL:AK144418 EMBL:AK147375 EMBL:U95016 IPI:IPI00656285 PIR:A56051
            RefSeq:NP_951031.2 UniGene:Mm.24214 PDB:2A3S PDB:2D2W PDBsum:2A3S
            PDBsum:2D2W ProteinModelPortal:P42128 SMR:P42128 IntAct:P42128
            STRING:P42128 PhosphoSite:P42128 PaxDb:P42128 PRIDE:P42128
            DNASU:17425 Ensembl:ENSMUST00000072837 GeneID:17425 KEGG:mmu:17425
            UCSC:uc009aio.1 InParanoid:P42128 EvolutionaryTrace:P42128
            NextBio:292048 Bgee:P42128 CleanEx:MM_FOXK1 Genevestigator:P42128
            GermOnline:ENSMUSG00000056493 Uniprot:P42128
        Length = 719

 Score = 188 (71.2 bits), Expect = 9.3e-12, P = 9.3e-12
 Identities = 39/93 (41%), Positives = 58/93 (62%)

Query:    47 KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K   KPP++Y +LI QA+   +  QLT+SGIY  I++ +PYY   D  W+NS+RHNLS+N
Sbjct:   287 KDESKPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLN 346

Query:   105 PHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
              +F K  ++ +  G G  W +   S+ + VE A
Sbjct:   347 RYFIKVPRSQEEPGKGSFWRIDPASEAKLVEQA 379


>RGD|1309643 [details] [associations]
            symbol:Foxk1 "forkhead box K1" species:10116 "Rattus norvegicus"
            [GO:0003677 "DNA binding" evidence=ISO] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
            "nucleolus" evidence=IEA;ISO] [GO:0006357 "regulation of
            transcription from RNA polymerase II promoter" evidence=IEA;ISO]
            [GO:0030308 "negative regulation of cell growth" evidence=IEA;ISO]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA;ISO]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IEA;ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA;ISO] InterPro:IPR000253
            InterPro:IPR001766 InterPro:IPR008984 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF00498 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50006 PROSITE:PS50039 SMART:SM00240
            SMART:SM00339 RGD:1309643 GO:GO:0045892 GO:GO:0045893 GO:GO:0005730
            GO:GO:0030308 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006357 Gene3D:2.60.200.20 SUPFAM:SSF49879
            GeneTree:ENSGT00700000104094 CTD:221937 KO:K09404 OMA:CEVGPKE
            OrthoDB:EOG4RV2TP IPI:IPI00189970 RefSeq:NP_001032296.2
            UniGene:Rn.211697 PhosphoSite:D3ZU55 Ensembl:ENSRNOT00000001466
            GeneID:304298 KEGG:rno:304298 UCSC:RGD:1309643 NextBio:652822
            Uniprot:D3ZU55
        Length = 719

 Score = 188 (71.2 bits), Expect = 9.3e-12, P = 9.3e-12
 Identities = 39/93 (41%), Positives = 58/93 (62%)

Query:    47 KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K   KPP++Y +LI QA+   +  QLT+SGIY  I++ +PYY   D  W+NS+RHNLS+N
Sbjct:   287 KDESKPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLN 346

Query:   105 PHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
              +F K  ++ +  G G  W +   S+ + VE A
Sbjct:   347 RYFIKVPRSQEEPGKGSFWRIDPASEAKLVEQA 379


>UNIPROTKB|F1NSF2 [details] [associations]
            symbol:FOXK1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0030308 "negative regulation of cell
            growth" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0045892
            GO:GO:0045893 GO:GO:0005730 GO:GO:0030308 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006357
            GO:GO:0006351 GeneTree:ENSGT00700000104094 OMA:CEVGPKE
            EMBL:AADN02023808 IPI:IPI00599164 Ensembl:ENSGALT00000007098
            Uniprot:F1NSF2
        Length = 531

 Score = 186 (70.5 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
 Identities = 39/93 (41%), Positives = 57/93 (61%)

Query:    47 KTHRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K   KPP++Y +LI QA+      QLT+SGIY  I++ +PYY   D  W+NS+RHNLS+N
Sbjct:   119 KDESKPPYSYAQLIVQAISSAPDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLN 178

Query:   105 PHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
              +F K  ++ +  G G  W +   S+ + VE A
Sbjct:   179 RYFIKVPRSQEEPGKGSFWRIDPASEAKLVEQA 211

 Score = 39 (18.8 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query:   153 EWGDDYSGQNSTETPAPSMETMPQPQPQPLNTMSLAHDP 191
             E+    S   S  +  P +  +P P+P  L    +A+ P
Sbjct:   280 EYRYSQSAPGSPVSAQPVIMAVPPPRPSTLVAKPVAYMP 318


>ZFIN|ZDB-GENE-061214-6 [details] [associations]
            symbol:foxe3 "forkhead box E3" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0001654 "eye development"
            evidence=IMP] [GO:0002088 "lens development in camera-type eye"
            evidence=IMP] [GO:0002089 "lens morphogenesis in camera-type eye"
            evidence=IMP] [GO:0060023 "soft palate development" evidence=IBA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0016477 "cell
            migration" evidence=IBA] [GO:0048484 "enteric nervous system
            development" evidence=IRD] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0048485 "sympathetic nervous system
            development" evidence=IRD] [GO:0007422 "peripheral nervous system
            development" evidence=IBA] [GO:0003690 "double-stranded DNA
            binding" evidence=IBA] [GO:0048937 "lateral line nerve glial cell
            development" evidence=IBA] [GO:0009888 "tissue development"
            evidence=IBA] [GO:0030878 "thyroid gland development" evidence=IBA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0048562 "embryonic organ
            morphogenesis" evidence=IBA] [GO:0006590 "thyroid hormone
            generation" evidence=IBA] [GO:0005667 "transcription factor
            complex" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0060022 "hard palate development" evidence=IBA]
            [GO:0048846 "axon extension involved in axon guidance"
            evidence=IRD] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 ZFIN:ZDB-GENE-061214-6 GO:GO:0016477 GO:GO:0043565
            GO:GO:0045944 GO:GO:0007422 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0003690
            GO:GO:0008134 GO:GO:0007389 GO:GO:0051090 GO:GO:0006590
            GO:GO:0002089 GO:GO:0060023 GO:GO:0009888 GO:GO:0060022
            GO:GO:0030878 GeneTree:ENSGT00700000104135 GO:GO:0048937
            HOVERGEN:HBG051642 KO:K09398 GO:GO:0048562 CTD:2301 EMBL:FP016062
            EMBL:BC163348 EMBL:BC163364 IPI:IPI00613897 RefSeq:NP_001073150.2
            UniGene:Dr.104252 SMR:B0UXI3 STRING:B0UXI3
            Ensembl:ENSDART00000091436 GeneID:570855 KEGG:dre:570855
            OMA:RENSKKW NextBio:20890323 Uniprot:B0UXI3
        Length = 422

 Score = 184 (69.8 bits), Expect = 9.8e-12, P = 9.8e-12
 Identities = 44/124 (35%), Positives = 65/124 (52%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    + +LT+ GIY++I ERFP+Y +N  +W+NS+RHNL++N  F 
Sbjct:   103 KPPYSYIALIAMAIANSPERKLTLGGIYKFIMERFPFYRENSKKWQNSIRHNLTLNDCFV 162

Query:   109 KGVK--ASQGAGHLWNLSDM-EPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTE 165
             K  +     G G+ W L    E + D      ++ R K    S  P      Y   +S  
Sbjct:   163 KIPREPGRPGKGNYWTLDPAAEDMFDNGSFLRRRKRFKRTDVSTYPG-----YMQSSSAF 217

Query:   166 TPAP 169
             TP P
Sbjct:   218 TPTP 221


>RGD|621716 [details] [associations]
            symbol:Foxd4 "forkhead box D4" species:10116 "Rattus norvegicus"
            [GO:0001755 "neural crest cell migration" evidence=IBA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0007422 "peripheral nervous system development"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0030318
            "melanocyte differentiation" evidence=IBA] [GO:0030513 "positive
            regulation of BMP signaling pathway" evidence=IBA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0048484 "enteric nervous system development"
            evidence=IBA] [GO:0048485 "sympathetic nervous system development"
            evidence=IBA] [GO:0048846 "axon extension involved in axon
            guidance" evidence=IBA] [GO:0048937 "lateral line nerve glial cell
            development" evidence=IBA] [GO:0050935 "iridophore differentiation"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0051216
            "cartilage development" evidence=IBA] [GO:0060678 "dichotomous
            subdivision of terminal units involved in ureteric bud branching"
            evidence=IBA] [GO:0090184 "positive regulation of kidney
            development" evidence=IBA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            RGD:621716 GO:GO:0001755 GO:GO:0043565 GO:GO:0045944 GO:GO:0007422
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0030513
            GO:GO:0051216 GO:GO:0008134 GO:GO:0007389 GO:GO:0048485
            GO:GO:0030318 GO:GO:0048484 GO:GO:0051090 GO:GO:0090184
            GO:GO:0048846 eggNOG:COG5025 GO:GO:0048937 OrthoDB:EOG45MN6S
            GO:GO:0060678 GO:GO:0050935 EMBL:L13206 IPI:IPI00763560 PIR:I60920
            UniGene:Rn.198192 ProteinModelPortal:Q63249 SMR:Q63249
            PhosphoSite:Q63249 Ensembl:ENSRNOT00000066752 UCSC:RGD:621716
            HOGENOM:HOG000198507 Genevestigator:Q63249 Uniprot:Q63249
        Length = 101

 Score = 164 (62.8 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 36/77 (46%), Positives = 49/77 (63%)

Query:    51 KPPFTYTELIEQA-LKEKHQ-LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A L+  H+ LT+SGI  +IS RFPYY +    W+NS+RHNLS+N  F 
Sbjct:     3 KPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFV 62

Query:   109 KGVK--ASQGAGHLWNL 123
             K  +     G G+ W+L
Sbjct:    63 KIPREPGHPGKGNYWSL 79


>ZFIN|ZDB-GENE-030131-6402 [details] [associations]
            symbol:foxk1 "forkhead box K1" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0008301 "DNA binding,
            bending" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0000287 "magnesium ion binding" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0009790 "embryo
            development" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR000253 InterPro:IPR001766 InterPro:IPR008984
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006 PROSITE:PS50039
            SMART:SM00240 SMART:SM00339 ZFIN:ZDB-GENE-030131-6402 GO:GO:0000287
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991
            Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 eggNOG:COG5025 GO:GO:0009888
            HSSP:Q01167 GeneTree:ENSGT00700000104094 CTD:221937
            HOGENOM:HOG000072588 HOVERGEN:HBG051649 KO:K09404 OMA:CEVGPKE
            EMBL:BX649536 EMBL:BC054664 IPI:IPI00500567 RefSeq:NP_956196.1
            UniGene:Dr.81025 SMR:Q7SYM1 Ensembl:ENSDART00000055201
            GeneID:334470 KEGG:dre:334470 InParanoid:Q7SYM1 OrthoDB:EOG4QRH3W
            NextBio:20810416 Uniprot:Q7SYM1
        Length = 639

 Score = 187 (70.9 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 39/93 (41%), Positives = 58/93 (62%)

Query:    47 KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             K   KPP++Y +LI QA+   +  QLT+SGIY  I++ +PYY   D  W+NS+RHNLS+N
Sbjct:   254 KDESKPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLN 313

Query:   105 PHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
              +F K  ++ +  G G  W +   S+ + VE A
Sbjct:   314 RYFIKVPRSQEEPGKGSFWRVDPSSEAKLVEQA 346


>MGI|MGI:1347481 [details] [associations]
            symbol:Foxc2 "forkhead box C2" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0001077 "RNA polymerase
            II core promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=ISO] [GO:0001501 "skeletal system
            development" evidence=IGI;IMP] [GO:0001503 "ossification"
            evidence=IMP] [GO:0001568 "blood vessel development" evidence=IGI]
            [GO:0001569 "patterning of blood vessels" evidence=IGI] [GO:0001570
            "vasculogenesis" evidence=IBA] [GO:0001656 "metanephros
            development" evidence=IMP] [GO:0001657 "ureteric bud development"
            evidence=IMP] [GO:0001756 "somitogenesis" evidence=IGI] [GO:0001822
            "kidney development" evidence=IMP] [GO:0001945 "lymph vessel
            development" evidence=IGI] [GO:0001946 "lymphangiogenesis"
            evidence=ISO;ISS;IBA] [GO:0001974 "blood vessel remodeling"
            evidence=IGI] [GO:0003007 "heart morphogenesis" evidence=IGI]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISO;ISS;IDA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IGI] [GO:0005634 "nucleus" evidence=ISO;IC]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0007219 "Notch signaling pathway" evidence=IGI]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007507 "heart development" evidence=ISO;IGI;IMP] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0008283 "cell
            proliferation" evidence=IMP] [GO:0008286 "insulin receptor
            signaling pathway" evidence=ISO;ISS;IBA] [GO:0008301 "DNA binding,
            bending" evidence=IBA] [GO:0009725 "response to hormone stimulus"
            evidence=ISO;ISS] [GO:0010595 "positive regulation of endothelial
            cell migration" evidence=IDA] [GO:0014032 "neural crest cell
            development" evidence=IGI] [GO:0014034 "neural crest cell fate
            commitment" evidence=IBA] [GO:0030199 "collagen fibril
            organization" evidence=IMP] [GO:0031490 "chromatin DNA binding"
            evidence=ISO;ISS;IBA] [GO:0033625 "positive regulation of integrin
            activation" evidence=IC] [GO:0033630 "positive regulation of cell
            adhesion mediated by integrin" evidence=IDA] [GO:0035050 "embryonic
            heart tube development" evidence=IGI] [GO:0035470 "positive
            regulation of vascular wound healing" evidence=IDA] [GO:0043010
            "camera-type eye development" evidence=IMP] [GO:0043066 "negative
            regulation of apoptotic process" evidence=IGI] [GO:0043565
            "sequence-specific DNA binding" evidence=ISO;ISS] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IDA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISO;ISS;IDA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0046620 "regulation of organ growth" evidence=IGI] [GO:0048010
            "vascular endothelial growth factor receptor signaling pathway"
            evidence=IGI] [GO:0048341 "paraxial mesoderm formation"
            evidence=IGI] [GO:0048343 "paraxial mesodermal cell fate
            commitment" evidence=IMP] [GO:0048701 "embryonic cranial skeleton
            morphogenesis" evidence=IMP] [GO:0048703 "embryonic viscerocranium
            morphogenesis" evidence=IMP] [GO:0048704 "embryonic skeletal system
            morphogenesis" evidence=IMP] [GO:0048844 "artery morphogenesis"
            evidence=IMP] [GO:0050880 "regulation of blood vessel size"
            evidence=IGI] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0055010
            "ventricular cardiac muscle tissue morphogenesis" evidence=IGI]
            [GO:0060038 "cardiac muscle cell proliferation" evidence=IGI]
            [GO:0072011 "glomerular endothelium development" evidence=IMP]
            [GO:0072112 "glomerular visceral epithelial cell differentiation"
            evidence=IMP] [GO:0072144 "glomerular mesangial cell development"
            evidence=IMP] [GO:0090050 "positive regulation of cell migration
            involved in sprouting angiogenesis" evidence=IDA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            MGI:MGI:1347481 GO:GO:0008286 GO:GO:0043066 GO:GO:0043565
            GO:GO:0030199 GO:GO:0045944 GO:GO:0007219 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0001077
            GO:GO:0000122 GO:GO:0008301 GO:GO:0001756 GO:GO:0043010
            GO:GO:0044212 GO:GO:0001974 GO:GO:0003690 GO:GO:0072144
            GO:GO:0001946 GO:GO:0001569 GO:GO:0033630 GO:GO:0001570
            GO:GO:0008134 GO:GO:0014032 GO:GO:0050880 GO:GO:0001503
            GO:GO:0048844 GO:GO:0031490 GO:GO:0001656 GO:GO:0001657
            GO:GO:0051090 GO:GO:0046620 GO:GO:0072112 GO:GO:0048010
            GO:GO:0060038 GO:GO:0055010 GO:GO:0033625 GO:GO:0072011
            GO:GO:0048703 eggNOG:COG5025 KO:K09396 GO:GO:0035050
            GeneTree:ENSGT00690000101636 HOVERGEN:HBG051640 GO:GO:0014034
            GO:GO:0048343 HOGENOM:HOG000007939 OrthoDB:EOG4MCX19 CTD:2303
            OMA:LNHLPGH GO:GO:0090050 GO:GO:0035470 EMBL:X92499 EMBL:Y08222
            EMBL:X74040 EMBL:AK076319 EMBL:S63607 IPI:IPI00126263 PIR:S34472
            RefSeq:NP_038547.2 UniGene:Mm.14092 ProteinModelPortal:Q61850
            SMR:Q61850 STRING:Q61850 PhosphoSite:Q61850 PRIDE:Q61850
            Ensembl:ENSMUST00000054691 GeneID:14234 KEGG:mmu:14234
            InParanoid:Q61850 NextBio:285515 Bgee:Q61850 CleanEx:MM_FOXC2
            Genevestigator:Q61850 GermOnline:ENSMUSG00000046714 Uniprot:Q61850
        Length = 494

 Score = 178 (67.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
 Identities = 35/85 (41%), Positives = 54/85 (63%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P+  K   KPP++Y  LI  A++   + ++T++GIYQ+I +RFP+Y +N   W+NS+RHN
Sbjct:    63 PAAPKDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHN 122

Query:   101 LSINPHFRKGVKASQ--GAGHLWNL 123
             LS+N  F K  +  +  G G  W L
Sbjct:   123 LSLNECFVKVPRDDKKPGKGSYWTL 147

 Score = 47 (21.6 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query:   158 YSGQNSTETPAPSMETMPQPQPQPLNTM-SLAHD-PLQ--PFEVYSQESKTFP 206
             + G    + P P+ +  P PQP    T   L H   L   P   ++ + +TFP
Sbjct:   390 HHGHLHPQAPPPAPQPPPAPQPATQATSWYLNHGGDLSHLPGHTFATQQQTFP 442


>RGD|3970 [details] [associations]
            symbol:Foxn1 "forkhead box N1" species:10116 "Rattus norvegicus"
          [GO:0001942 "hair follicle development" evidence=ISO] [GO:0002260
          "lymphocyte homeostasis" evidence=IEA;ISO] [GO:0003690
          "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
          polymerase II distal enhancer sequence-specific DNA binding
          transcription factor activity" evidence=IBA] [GO:0005575
          "cellular_component" evidence=ND] [GO:0005667 "transcription factor
          complex" evidence=IBA] [GO:0007389 "pattern specification process"
          evidence=IBA] [GO:0008134 "transcription factor binding"
          evidence=IBA] [GO:0008283 "cell proliferation" evidence=ISO]
          [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0008544
          "epidermis development" evidence=ISO] [GO:0009790 "embryo
          development" evidence=IBA] [GO:0030216 "keratinocyte differentiation"
          evidence=ISO;IMP] [GO:0033081 "regulation of T cell differentiation
          in thymus" evidence=IEA;ISO] [GO:0035878 "nail development"
          evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
          evidence=IEA] [GO:0048538 "thymus development" evidence=ISO;IMP]
          [GO:0050673 "epithelial cell proliferation" evidence=ISO;IBA]
          [GO:0051090 "regulation of sequence-specific DNA binding
          transcription factor activity" evidence=IBA] InterPro:IPR001766
          InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00658
          PROSITE:PS50039 SMART:SM00339 RGD:3970 GO:GO:0030216 GO:GO:0043565
          Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
          GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0033081 GO:GO:0048538
          GO:GO:0008134 GO:GO:0050673 GO:GO:0007389 EMBL:CH473948 GO:GO:0051090
          GeneTree:ENSGT00700000104051 OMA:PAPQSKH OrthoDB:EOG4DZ1TZ
          GO:GO:0002260 IPI:IPI00763745 UniGene:Rn.217924
          Ensembl:ENSRNOT00000014672 Uniprot:D4A1T1
        Length = 648

 Score = 187 (70.9 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 65/207 (31%), Positives = 93/207 (44%)

Query:     3 YASLEPM--ELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELI 60
             Y S +P   +  P G   P+ P   S+H P   Q          H     KP ++Y+ LI
Sbjct:   224 YCSSQPTFHQYSPGGGSYPV-PYLGSTHYPY--QRIAPQANADGHQPLFPKPIYSYSILI 280

Query:    61 EQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA- 117
               ALK      L VS IY +++E FPY+    D WKNSVRHNLS+N  F K V+   G+ 
Sbjct:   281 FMALKNSKTGSLPVSEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEK-VENKSGSS 339

Query:   118 ---GHLW--NLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSME 172
                G LW  N S ++ +++  +  WK+       +S+   E  D   G    +  +P + 
Sbjct:   340 SRKGCLWALNPSKIDKMQEELQK-WKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLG 398

Query:   173 TMPQ----PQP-QPLNTMSLAHDPLQP 194
               P     P P +PL   +    PL P
Sbjct:   399 CPPPGLAGPGPIRPLAPSAGLTQPLHP 425


>UNIPROTKB|J9P4F9 [details] [associations]
            symbol:FOXK2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00700000104094 Ensembl:ENSCAFT00000044110
            Uniprot:J9P4F9
        Length = 471

 Score = 184 (69.8 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 54/168 (32%), Positives = 84/168 (50%)

Query:    33 SQSEVEDRCCPSHA-KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQN 89
             SQ E E       + K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY   
Sbjct:    50 SQPENEKEASGGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTA 109

Query:    90 DDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDASKSNWKKNR--L 142
             D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + +E A +    +     
Sbjct:   110 DKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPRGVPCF 169

Query:   143 KTYLESLQ-------PSEWGDDYSGQNSTETPAP-SMETMPQP-QPQP 181
             +T L  L        P+  G   +  +  +TP   S E  P P +P+P
Sbjct:   170 RTPLGPLSSRSAPASPNHAGVLSAHSSGAQTPESLSREGSPAPLEPEP 217


>UNIPROTKB|F1NNS0 [details] [associations]
            symbol:FOXK2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000253 InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF00498 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50006 PROSITE:PS50039 SMART:SM00240
            SMART:SM00339 GO:GO:0005634 GO:GO:0000287 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            Gene3D:2.60.200.20 GeneTree:ENSGT00700000104094 EMBL:AADN02029895
            EMBL:AADN02029896 EMBL:AADN02029897 IPI:IPI00584785
            Ensembl:ENSGALT00000002396 Uniprot:F1NNS0
        Length = 630

 Score = 186 (70.5 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 54/168 (32%), Positives = 87/168 (51%)

Query:    33 SQSEVEDRCCPSHA-KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQN 89
             SQSE +       + K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY   
Sbjct:   209 SQSENDKEASGGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTA 268

Query:    90 DDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDASKSNWKKNR--L 142
             D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + +E A +    +     
Sbjct:   269 DKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPRGVPCF 328

Query:   143 KTYLESL--QPSEWGDDYSG-----QNSTETPAP-SMETMPQP-QPQP 181
             +T L  L  + +    ++SG      +  +TP   S E  P P +P+P
Sbjct:   329 RTPLGPLSSRSAPASPNHSGVLSAHSSGVQTPESLSREGSPVPMEPEP 376


>UNIPROTKB|Q68F77 [details] [associations]
            symbol:foxc1 "Forkhead box protein C1" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0001503 "ossification"
            evidence=IBA] [GO:0001541 "ovarian follicle development"
            evidence=IBA] [GO:0001570 "vasculogenesis" evidence=IBA]
            [GO:0001656 "metanephros development" evidence=IBA] [GO:0001657
            "ureteric bud development" evidence=IBA] [GO:0001756
            "somitogenesis" evidence=IBA] [GO:0001946 "lymphangiogenesis"
            evidence=IBA] [GO:0001974 "blood vessel remodeling" evidence=IBA]
            [GO:0003677 "DNA binding" evidence=ISS] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006351 "transcription, DNA-dependent"
            evidence=ISS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0007155 "cell adhesion"
            evidence=ISS] [GO:0007219 "Notch signaling pathway" evidence=IBA]
            [GO:0007420 "brain development" evidence=IBA] [GO:0007498 "mesoderm
            development" evidence=ISS] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0008354 "germ cell migration" evidence=IBA]
            [GO:0014034 "neural crest cell fate commitment" evidence=IBA]
            [GO:0030199 "collagen fibril organization" evidence=IBA]
            [GO:0030203 "glycosaminoglycan metabolic process" evidence=IBA]
            [GO:0031490 "chromatin DNA binding" evidence=IBA] [GO:0032808
            "lacrimal gland development" evidence=IBA] [GO:0035050 "embryonic
            heart tube development" evidence=IBA] [GO:0042475 "odontogenesis of
            dentin-containing tooth" evidence=IBA] [GO:0043010 "camera-type eye
            development" evidence=IBA] [GO:0045930 "negative regulation of
            mitotic cell cycle" evidence=IBA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0046620 "regulation of organ growth" evidence=IBA] [GO:0048010
            "vascular endothelial growth factor receptor signaling pathway"
            evidence=IBA] [GO:0048343 "paraxial mesodermal cell fate
            commitment" evidence=IBA] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0048844 "artery morphogenesis" evidence=IBA]
            [GO:0050880 "regulation of blood vessel size" evidence=IBA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0055010
            "ventricular cardiac muscle tissue morphogenesis" evidence=IBA]
            [GO:0060038 "cardiac muscle cell proliferation" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0007420 GO:GO:0043565 GO:GO:0030199 GO:GO:0045944
            GO:GO:0007155 GO:GO:0007219 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0001756
            GO:GO:0043010 GO:GO:0001974 GO:GO:0003690 GO:GO:0001541
            GO:GO:0001946 GO:GO:0001570 GO:GO:0042475 GO:GO:0008134
            GO:GO:0050880 GO:GO:0001503 GO:GO:0048844 GO:GO:0031490
            GO:GO:0001656 GO:GO:0001657 GO:GO:0051090 GO:GO:0046620
            GO:GO:0048010 GO:GO:0045930 GO:GO:0060038 GO:GO:0055010
            GO:GO:0048793 GO:GO:0030203 eggNOG:COG5025 KO:K09396 GO:GO:0035050
            GO:GO:0008354 GeneTree:ENSGT00690000101636 GO:GO:0032808 CTD:2296
            HOVERGEN:HBG051640 GO:GO:0014034 GO:GO:0048343 HOGENOM:HOG000007939
            EMBL:BC079966 RefSeq:NP_001007864.1 UniGene:Str.6156
            ProteinModelPortal:Q68F77 SMR:Q68F77 Ensembl:ENSXETT00000001313
            GeneID:493250 KEGG:xtr:493250 Xenbase:XB-GENE-479055
            InParanoid:Q68F77 OrthoDB:EOG4MCX19 Bgee:Q68F77 Uniprot:Q68F77
        Length = 495

 Score = 184 (69.8 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 55/211 (26%), Positives = 94/211 (44%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A++   + ++T++GIYQ+I ERFP+Y  N   W+NS+RHNLS+N  F 
Sbjct:    79 KPPYSYIALITMAIQNAPEKKITLNGIYQFIMERFPFYRDNKQGWQNSIRHNLSLNECFV 138

Query:   109 KGVKASQ--GAGHLWNLS--DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNST 164
             K  +  +  G G  W L        E+ S    ++   K  +      E  D    ++  
Sbjct:   139 KVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDVVKDATKEDKDRLLKEHHG 198

Query:   165 ETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLY----IQSND 220
               PA + +   Q Q Q          P++  ++ ++   + P +     L     I+S D
Sbjct:   199 SQPAAAQQQRQQQQGQAQAEQDSGSQPVRIQDIKTENGTSSPPQAMSPALSTVPKIESPD 258

Query:   221 NVL-YTPHEDHKLYHNDNVLYTPGEDHKLYQ 250
             +    +    H +  N ++     E H  +Q
Sbjct:   259 SSSSMSSGSPHSIPSNRSMSLEAAESHHPHQ 289


>ZFIN|ZDB-GENE-061207-6 [details] [associations]
            symbol:si:ch211-145o7.3 "si:ch211-145o7.3"
            species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 ZFIN:ZDB-GENE-061207-6 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 eggNOG:COG5025 GO:GO:0009888
            GeneTree:ENSGT00700000104051 EMBL:CR626869 IPI:IPI00803811
            Ensembl:ENSDART00000145039 HOVERGEN:HBG095209 InParanoid:A2CEM5
            OrthoDB:EOG4CZBHF NextBio:20785894 Uniprot:A2CEM5
        Length = 332

 Score = 180 (68.4 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 56/191 (29%), Positives = 91/191 (47%)

Query:    15 GQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKHQ--LTV 72
             G   P++P    S  P+     +  +  PS   +  KPP++++ LI  A+++  +  L V
Sbjct:    77 GNLLPLQPLPKISTLPQMFDP-IPAQHLPS---SPAKPPYSFSSLIFMAIEDSPEKSLPV 132

Query:    73 SGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRK---GVKASQGAGHLWNLS-DMEP 128
              GIY+WI E FPYY +    W+NSVRHNLS++  F++       S G G LW +  +  P
Sbjct:   133 KGIYEWIVENFPYYKEAPGGWRNSVRHNLSLSKSFQRIHRDKSQSVGKGSLWRVCPEYRP 192

Query:   129 --VEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNS-TETPAPSMETMPQPQPQPLNTM 185
               +E   K+++     ++ L      E  D+  GQN   ET    +  +      P  + 
Sbjct:   193 ALLEVLRKTHYCHRTNRSLLNKPVLLEATDN--GQNMFNETM--ELSDLDSLSSNPPCSF 248

Query:   186 SLAHDPLQPFE 196
             +  H+ L P E
Sbjct:   249 TPDHEELIPME 259


>RGD|1590042 [details] [associations]
            symbol:LOC688330 "similar to forkhead box K2 isoform 1"
            species:10116 "Rattus norvegicus" [GO:0000287 "magnesium ion
            binding" evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0009888 "tissue
            development" evidence=IBA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0051090 "regulation of sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            InterPro:IPR000253 InterPro:IPR001766 InterPro:IPR008984
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006 PROSITE:PS50039
            SMART:SM00240 SMART:SM00339 RGD:1305408 RGD:1590042 GO:GO:0000287
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991
            Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 GO:GO:0009888
            GeneTree:ENSGT00700000104094 IPI:IPI00361779
            Ensembl:ENSRNOT00000054919 ArrayExpress:D3ZY28 Uniprot:D3ZY28
        Length = 580

 Score = 185 (70.2 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 55/168 (32%), Positives = 84/168 (50%)

Query:    33 SQSEVEDRCCPSHA-KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQN 89
             SQ E E       + K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY   
Sbjct:   230 SQPENEKEASGGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTA 289

Query:    90 DDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDASKSNWKKNR--L 142
             D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + VE A +    +     
Sbjct:   290 DKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLVEQAFRKRRPRGVPCF 349

Query:   143 KTYLESLQ-------PSEWGDDYSGQNSTETPAP-SMETMPQP-QPQP 181
             +T L  L        P+  G   +  +  +TP   S E  P P +P+P
Sbjct:   350 RTPLGPLSSRSAPASPNHAGVLSAHSSGAQTPESLSREGSPAPLEPEP 397


>UNIPROTKB|Q9PTK2 [details] [associations]
            symbol:foxe4 "Forkhead box protein E4" species:8355
            "Xenopus laevis" [GO:0002088 "lens development in camera-type eye"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=NAS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=NAS] [GO:0005634 "nucleus" evidence=NAS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=NAS]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0003677 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0002088
            HSSP:Q63245 HOVERGEN:HBG051642 KO:K09398 CTD:2301 EMBL:AF186464
            RefSeq:NP_001079202.1 UniGene:Xl.593 ProteinModelPortal:Q9PTK2
            SMR:Q9PTK2 GeneID:373809 KEGG:xla:373809 Xenbase:XB-GENE-865391
            Uniprot:Q9PTK2
        Length = 365

 Score = 181 (68.8 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 43/125 (34%), Positives = 66/125 (52%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    + +LT+ GIY++I ERFP+Y +N  +W+NS+RHNL++N  F 
Sbjct:    48 KPPYSYIALIAMAIANSPERKLTLGGIYKFIMERFPFYRENSKKWQNSIRHNLTLNDCFV 107

Query:   109 KGVK--ASQGAGHLWNLSDM-EPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTE 165
             K  +     G G+ W L    E + D      ++ R K    +  P      Y   +S  
Sbjct:   108 KIPREPGHPGKGNYWTLDPAAEDMFDNGSFLRRRKRFKRTDITTYPG-----YMQNSSAF 162

Query:   166 TPAPS 170
             TP P+
Sbjct:   163 TPTPT 167


>UNIPROTKB|Q9PVY8 [details] [associations]
            symbol:foxc2-b "Forkhead box protein C2-B" species:8355
            "Xenopus laevis" [GO:0003677 "DNA binding" evidence=NAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] [GO:0007498 "mesoderm development" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0007275 GO:GO:0005634 GO:GO:0045893
            GO:GO:0007498 GO:GO:0003677 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 HSSP:Q99958
            HOVERGEN:HBG051640 EMBL:AJ249225 EMBL:BC170193 EMBL:BC170195
            RefSeq:NP_001083920.1 UniGene:Xl.508 GeneID:399191 KEGG:xla:399191
            CTD:399191 Xenbase:XB-GENE-6254394 Uniprot:Q9PVY8
        Length = 461

 Score = 183 (69.5 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 41/130 (31%), Positives = 70/130 (53%)

Query:    51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A++     ++T++GIYQ+I +RFP+Y +N   W+NS+RHNLS+N  F 
Sbjct:    72 KPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 131

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTET 166
             K  +  +  G G  W+L D +        ++ + R +   +     +       Q   + 
Sbjct:   132 KVPRDDKKPGKGSYWSL-DPDSYNMFENGSFLRRRRRFKKKDASREKEDRLLKDQGKVQG 190

Query:   167 PAPSMETMPQ 176
             P PS+E +P+
Sbjct:   191 PVPSLE-LPK 199


>UNIPROTKB|A8MTJ6 [details] [associations]
            symbol:FOXI3 "Forkhead box protein I3" species:9606 "Homo
            sapiens" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009957 "epidermal cell fate specification"
            evidence=IBA] [GO:0043049 "otic placode formation" evidence=IBA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0008134 GO:GO:0007389
            GO:GO:0051090 GO:GO:0043049 GO:GO:0009957 HOVERGEN:HBG067944
            KO:K09401 CTD:344167 EMBL:AC012671 EMBL:BN001221 EMBL:BN001222
            IPI:IPI00787337 RefSeq:NP_001129121.1 UniGene:Hs.716722
            ProteinModelPortal:A8MTJ6 SMR:A8MTJ6 PRIDE:A8MTJ6 GeneID:344167
            KEGG:hsa:344167 UCSC:uc010ytq.1 GeneCards:GC02M088747
            HGNC:HGNC:35123 MIM:612351 neXtProt:NX_A8MTJ6 PharmGKB:PA164720107
            InParanoid:A8MTJ6 GenomeRNAi:344167 NextBio:98650
            Genevestigator:A8MTJ6 Uniprot:A8MTJ6
        Length = 420

 Score = 182 (69.1 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 49/161 (30%), Positives = 79/161 (49%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A++   + +LT+S IYQ++++ FP+Y ++   W+NS+RHNLS+N  F+
Sbjct:   145 RPPYSYSALIAMAIQSAPERKLTLSHIYQFVADSFPFYQRSKAGWQNSIRHNLSLNDCFK 204

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLK------TYLESLQPSE------ 153
             K  +     G G+ W L  + E + D      K+ R        T       SE      
Sbjct:   205 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRSEASNGSTVAAGTSKSEEGLSSG 264

Query:   154 WGDDYSGQNSTETPAPSMETMPQPQPQPLNTMSLAHDPLQP 194
              G    G+   E+P+  +     P+P P  T S A  P  P
Sbjct:   265 LGSGVGGKPEEESPSTLLRPSHSPEP-PEGTKSTASSPGGP 304


>UNIPROTKB|Q92949 [details] [associations]
            symbol:FOXJ1 "Forkhead box protein J1" species:9606 "Homo
            sapiens" [GO:0001947 "heart looping" evidence=IBA] [GO:0002635
            "negative regulation of germinal center formation"
            evidence=ISS;IBA] [GO:0002897 "positive regulation of central B
            cell tolerance induction" evidence=ISS;IBA] [GO:0002924 "negative
            regulation of humoral immune response mediated by circulating
            immunoglobulin" evidence=ISS;IBA] [GO:0003690 "double-stranded DNA
            binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0019904 "protein domain specific binding" evidence=IBA]
            [GO:0030036 "actin cytoskeleton organization" evidence=ISS;IBA]
            [GO:0030324 "lung development" evidence=IBA] [GO:0030855
            "epithelial cell differentiation" evidence=IBA] [GO:0032088
            "negative regulation of NF-kappaB transcription factor activity"
            evidence=ISS;IBA] [GO:0032862 "activation of Rho GTPase activity"
            evidence=ISS;IBA] [GO:0033085 "negative regulation of T cell
            differentiation in thymus" evidence=ISS;IBA] [GO:0035089
            "establishment of apical/basal cell polarity" evidence=ISS;IBA]
            [GO:0042130 "negative regulation of T cell proliferation"
            evidence=IBA] [GO:0042384 "cilium assembly" evidence=ISS;IBA]
            [GO:0045409 "negative regulation of interleukin-6 biosynthetic
            process" evidence=ISS;IBA] [GO:0050869 "negative regulation of B
            cell activation" evidence=ISS;IBA] [GO:0050900 "leukocyte
            migration" evidence=ISS;IBA] [GO:0060972 "left/right pattern
            formation" evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=NAS] [GO:0003677 "DNA
            binding" evidence=NAS] [GO:0007283 "spermatogenesis" evidence=NAS]
            [GO:0007389 "pattern specification process" evidence=ISS]
            [GO:0002508 "central tolerance induction" evidence=ISS] [GO:0006959
            "humoral immune response" evidence=ISS] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0007420
            "brain development" evidence=ISS;NAS] [GO:0060429 "epithelium
            development" evidence=ISS] [GO:0000976 "transcription regulatory
            region sequence-specific DNA binding" evidence=IDA] [GO:1901248
            "positive regulation of lung ciliated cell differentiation"
            evidence=IDA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IDA] [GO:0060428 "lung
            epithelium development" evidence=IEP;NAS] [GO:0072016 "glomerular
            parietal epithelial cell development" evidence=IEP] [GO:0035502
            "metanephric part of ureteric bud development" evidence=IEP]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0019904 GO:GO:0007420 GO:GO:0042130 GO:GO:0030036
            GO:GO:0050900 GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0007283 GO:GO:0005667 GO:GO:0003705 GO:GO:0000122
            GO:GO:0008301 GO:GO:0003690 GO:GO:0042384 GO:GO:0001947
            GO:GO:0032088 GO:GO:0008134 GO:GO:0006959 GO:GO:0000976
            GO:GO:0033085 GO:GO:0035502 GO:GO:0032862 eggNOG:COG5025
            GO:GO:0060972 GO:GO:0060428 GO:GO:0002924 EMBL:U69537 EMBL:X99349
            EMBL:X99350 EMBL:X99351 EMBL:AJ272064 EMBL:BC046460 IPI:IPI00024319
            RefSeq:NP_001445.2 UniGene:Hs.651204 ProteinModelPortal:Q92949
            SMR:Q92949 IntAct:Q92949 STRING:Q92949 DMDM:12644465 PRIDE:Q92949
            Ensembl:ENST00000322957 GeneID:2302 KEGG:hsa:2302 UCSC:uc002jqx.3
            CTD:2302 GeneCards:GC17M074132 HGNC:HGNC:3816 HPA:HPA005714
            MIM:602291 MIM:607154 neXtProt:NX_Q92949 PharmGKB:PA28233
            HOGENOM:HOG000112631 HOVERGEN:HBG056832 InParanoid:Q92949 KO:K09402
            OMA:PVHIHPA OrthoDB:EOG40CHH5 PhylomeDB:Q92949 GenomeRNAi:2302
            NextBio:9347 Bgee:Q92949 CleanEx:HS_FOXJ1 Genevestigator:Q92949
            GermOnline:ENSG00000129654 GO:GO:0002508 GO:GO:0035089
            GO:GO:0072016 GO:GO:0050869 GO:GO:0002635 GO:GO:0045409
            GO:GO:0002897 GO:GO:1901248 Uniprot:Q92949
        Length = 421

 Score = 182 (69.1 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 61/193 (31%), Positives = 92/193 (47%)

Query:    14 PGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKH--QLT 71
             PG+  P   C TS   P   Q+   D    +    H KPP++Y  LI  A++     ++T
Sbjct:    88 PGK--PTSSC-TSRSAPPGLQAPPPDDVDYA-TNPHVKPPYSYATLICMAMQASKATKIT 143

Query:    72 VSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRK--GVKASQGAGHLWNLSDMEPV 129
             +S IY+WI++ F Y+   D  W+NS+RHNLS+N  F K    K   G G  W + D +  
Sbjct:   144 LSAIYKWITDNFCYFRHADPTWQNSIRHNLSLNKCFIKVPREKDEPGKGGFWRI-DPQYA 202

Query:   130 EDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQPLNTMSLAH 189
             E      +KK RL      + P+     ++ Q + E   PS   +P+  P  +NT   A 
Sbjct:   203 ERLLSGAFKKRRLPPV--HIHPA-----FARQAAQE---PS--AVPRAGPLTVNTE--AQ 248

Query:   190 DPLQPFEVYSQES 202
               L+ FE  + E+
Sbjct:   249 QLLREFEEATGEA 261


>UNIPROTKB|Q7ZX03 [details] [associations]
            symbol:foxk2 "Forkhead box protein K2" species:8355
            "Xenopus laevis" [GO:0000287 "magnesium ion binding" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=NAS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=NAS] [GO:0005634 "nucleus" evidence=NAS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            InterPro:IPR000253 InterPro:IPR001766 InterPro:IPR008984
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006 PROSITE:PS50039
            SMART:SM00240 SMART:SM00339 GO:GO:0005634 GO:GO:0000287
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 Gene3D:2.60.200.20 SUPFAM:SSF49879 HSSP:Q01167
            HOVERGEN:HBG051649 EMBL:BC046369 EMBL:BC112949 UniGene:Xl.23253
            ProteinModelPortal:Q7ZX03 SMR:Q7ZX03 Xenbase:XB-GENE-864986
            Uniprot:Q7ZX03
        Length = 642

 Score = 185 (70.2 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 43/110 (39%), Positives = 64/110 (58%)

Query:    31 EPSQSEVE-DRCCPSHAKTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYN 87
             E +QSE + D       K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY 
Sbjct:   198 EAAQSENDKDASGGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYR 257

Query:    88 QNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
               D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + VE A
Sbjct:   258 TADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLVEQA 307


>RGD|1305408 [details] [associations]
            symbol:Foxk2 "forkhead box K2" species:10116 "Rattus norvegicus"
            [GO:0000287 "magnesium ion binding" evidence=IBA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR000253 InterPro:IPR001766
            InterPro:IPR008984 InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006
            PROSITE:PS50039 SMART:SM00240 SMART:SM00339 RGD:1305408
            GO:GO:0000287 GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991
            Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 GO:GO:0009888 IPI:IPI00949827
            Ensembl:ENSRNOT00000068086 ArrayExpress:F1LS44 Uniprot:F1LS44
        Length = 650

 Score = 185 (70.2 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 55/168 (32%), Positives = 84/168 (50%)

Query:    33 SQSEVEDRCCPSHA-KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQN 89
             SQ E E       + K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY   
Sbjct:   230 SQPENEKEASGGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTA 289

Query:    90 DDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDASKSNWKKNR--L 142
             D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + VE A +    +     
Sbjct:   290 DKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLVEQAFRKRRPRGVPCF 349

Query:   143 KTYLESLQ-------PSEWGDDYSGQNSTETPAP-SMETMPQP-QPQP 181
             +T L  L        P+  G   +  +  +TP   S E  P P +P+P
Sbjct:   350 RTPLGPLSSRSAPASPNHAGVLSAHSSGAQTPESLSREGSPAPLEPEP 397


>MGI|MGI:1916087 [details] [associations]
            symbol:Foxk2 "forkhead box K2" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0000287 "magnesium ion
            binding" evidence=ISO;IBA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0009790
            "embryo development" evidence=IBA] [GO:0009888 "tissue development"
            evidence=IBA] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] InterPro:IPR000253
            InterPro:IPR001766 InterPro:IPR008984 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF00498 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50006 PROSITE:PS50039 SMART:SM00240
            SMART:SM00339 MGI:MGI:1916087 GO:GO:0000287 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 Gene3D:2.60.200.20
            SUPFAM:SSF49879 GO:GO:0005667 GO:GO:0003705 GO:GO:0000122
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 EMBL:AL808021 eggNOG:COG5025
            GO:GO:0009888 HSSP:Q01167 GeneTree:ENSGT00700000104094
            HOGENOM:HOG000072588 HOVERGEN:HBG051649 KO:K09404 CTD:3607
            OMA:HGQVNNA OrthoDB:EOG4XD3QX EMBL:EU882160 EMBL:AK150439
            IPI:IPI00808277 IPI:IPI00854998 RefSeq:NP_001074401.2
            UniGene:Mm.209750 ProteinModelPortal:Q3UCQ1 SMR:Q3UCQ1
            STRING:Q3UCQ1 PhosphoSite:Q3UCQ1 PaxDb:Q3UCQ1 PRIDE:Q3UCQ1
            DNASU:68837 Ensembl:ENSMUST00000106113 GeneID:68837 KEGG:mmu:68837
            UCSC:uc007mvs.1 InParanoid:B5AZX0 NextBio:328023 Bgee:Q3UCQ1
            CleanEx:MM_FOXK2 Genevestigator:Q3UCQ1
            GermOnline:ENSMUSG00000039275 Uniprot:Q3UCQ1
        Length = 651

 Score = 185 (70.2 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 55/168 (32%), Positives = 84/168 (50%)

Query:    33 SQSEVEDRCCPSHA-KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQN 89
             SQ E E       + K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY   
Sbjct:   230 SQPENEKEASGGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTA 289

Query:    90 DDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDASKSNWKKNR--L 142
             D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + VE A +    +     
Sbjct:   290 DKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLVEQAFRKRRPRGVPCF 349

Query:   143 KTYLESLQ-------PSEWGDDYSGQNSTETPAP-SMETMPQP-QPQP 181
             +T L  L        P+  G   +  +  +TP   S E  P P +P+P
Sbjct:   350 RTPLGPLSSRSAPASPNHAGVLSAHSSGAQTPESLSREGSPAPLEPEP 397


>UNIPROTKB|H9GWC4 [details] [associations]
            symbol:FOXK2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00700000104094 OMA:HGQVNNA Ensembl:ENSCAFT00000020603
            Uniprot:H9GWC4
        Length = 573

 Score = 184 (69.8 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 54/168 (32%), Positives = 84/168 (50%)

Query:    33 SQSEVEDRCCPSHA-KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQN 89
             SQ E E       + K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY   
Sbjct:   152 SQPENEKEASGGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTA 211

Query:    90 DDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDASKSNWKKNR--L 142
             D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + +E A +    +     
Sbjct:   212 DKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPRGVPCF 271

Query:   143 KTYLESLQ-------PSEWGDDYSGQNSTETPAP-SMETMPQP-QPQP 181
             +T L  L        P+  G   +  +  +TP   S E  P P +P+P
Sbjct:   272 RTPLGPLSSRSAPASPNHAGVLSAHSSGAQTPESLSREGSPAPLEPEP 319


>UNIPROTKB|Q4H3J3 [details] [associations]
            symbol:Ci-FoxC "Transcription factor protein" species:7719
            "Ciona intestinalis" [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007219 "Notch signaling pathway" evidence=IBA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0009653
            "anatomical structure morphogenesis" evidence=IBA] [GO:0009790
            "embryo development" evidence=IBA] [GO:0009888 "tissue development"
            evidence=IBA] [GO:0031490 "chromatin DNA binding" evidence=IBA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0046620 "regulation of
            organ growth" evidence=IBA] [GO:0048010 "vascular endothelial
            growth factor receptor signaling pathway" evidence=IBA] [GO:0048513
            "organ development" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0043565 GO:GO:0045944 GO:GO:0007219
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0009653 GO:GO:0007389 GO:GO:0031490 GO:GO:0051090
            GO:GO:0046620 GO:GO:0048010 GO:GO:0048513 eggNOG:COG5025 KO:K09396
            GO:GO:0009888 EMBL:AB210429 RefSeq:NP_001071708.1 UniGene:Cin.33243
            ProteinModelPortal:Q4H3J3 SMR:Q4H3J3 GeneID:778609 KEGG:cin:778609
            CTD:373528 HOGENOM:HOG000169861 InParanoid:Q4H3J3 Uniprot:Q4H3J3
        Length = 511

 Score = 183 (69.5 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 35/83 (42%), Positives = 53/83 (63%)

Query:    45 HAKTHRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLS 102
             ++K   KPP++Y  LI  A++     ++T++GIYQWI ERFP+Y +N   W+NS+RHNLS
Sbjct:    93 NSKDMVKPPYSYIALIAMAIQNAPDKKVTLNGIYQWIMERFPFYRENKQGWQNSIRHNLS 152

Query:   103 INPHFRKGVKASQ--GAGHLWNL 123
             +N  F K  +  +  G G  W +
Sbjct:   153 LNECFVKIPRDDKKPGKGSYWTM 175


>RGD|621723 [details] [associations]
            symbol:Foxe1 "forkhead box E1 (thyroid transcription factor 2)"
            species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
            of transcription from RNA polymerase II promoter" evidence=IDA]
            [GO:0000981 "sequence-specific DNA binding RNA polymerase II
            transcription factor activity" evidence=IDA] [GO:0002089 "lens
            morphogenesis in camera-type eye" evidence=IBA] [GO:0003677 "DNA
            binding" evidence=ISO;IDA] [GO:0003690 "double-stranded DNA
            binding" evidence=IDA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO;TAS] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IMP] [GO:0006590 "thyroid hormone
            generation" evidence=ISO;IBA] [GO:0007389 "pattern specification
            process" evidence=IBA] [GO:0007422 "peripheral nervous system
            development" evidence=IRD] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0016477 "cell migration" evidence=ISO;IBA]
            [GO:0030878 "thyroid gland development" evidence=ISO;IBA]
            [GO:0031069 "hair follicle morphogenesis" evidence=ISO;IBA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IBA] [GO:0048484 "enteric
            nervous system development" evidence=IRD] [GO:0048485 "sympathetic
            nervous system development" evidence=IRD] [GO:0048538 "thymus
            development" evidence=IEA;ISO] [GO:0048562 "embryonic organ
            morphogenesis" evidence=ISO;IBA] [GO:0048846 "axon extension
            involved in axon guidance" evidence=IRD] [GO:0048937 "lateral line
            nerve glial cell development" evidence=IRD] [GO:0051090 "regulation
            of sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0060022 "hard palate development"
            evidence=ISO;IBA] [GO:0060023 "soft palate development"
            evidence=ISO;IBA] [GO:0060465 "pharynx development"
            evidence=IEA;ISO] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 RGD:621723 GO:GO:0016477
            GO:GO:0043565 GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0000122 GO:GO:0008301
            GO:GO:0003690 GO:GO:0048538 GO:GO:0008134 EMBL:CH473962
            GO:GO:0007389 GO:GO:0060465 GO:GO:0051090 GO:GO:0031069
            GO:GO:0006590 GO:GO:0002089 GO:GO:0060023 eggNOG:COG5025
            GO:GO:0060022 GO:GO:0030878 GeneTree:ENSGT00700000104135
            HSSP:Q63245 CTD:2304 HOGENOM:HOG000231286 HOVERGEN:HBG051642
            KO:K09398 OMA:TGYQPAG GO:GO:0048562 EMBL:Y11321 IPI:IPI00195679
            RefSeq:NP_620264.1 UniGene:Rn.26546 SMR:O08771 STRING:O08771
            Ensembl:ENSRNOT00000012637 GeneID:192274 KEGG:rno:192274
            UCSC:RGD:621723 InParanoid:O08771 NextBio:622984
            Genevestigator:O08771 Uniprot:O08771
        Length = 370

 Score = 180 (68.4 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 40/105 (38%), Positives = 64/105 (60%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    + +LT+ GIY++I+ERFP+Y  N  +W+NS+RHNL++N  F 
Sbjct:    54 KPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCFL 113

Query:   109 KGVKAS--QGAGHLWNLS-DMEPV-EDAS----KSNWKKNRLKTY 145
             K  + +   G G+ W L  + E + E  S    +  +K++ L TY
Sbjct:   114 KIPREAGRPGKGNYWALDPNAEDMFESGSFLRRRKRFKRSDLSTY 158


>MGI|MGI:1353500 [details] [associations]
            symbol:Foxe1 "forkhead box E1" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;IBA] [GO:0000981
            "sequence-specific DNA binding RNA polymerase II transcription
            factor activity" evidence=ISO] [GO:0002089 "lens morphogenesis in
            camera-type eye" evidence=IBA] [GO:0003677 "DNA binding"
            evidence=ISO] [GO:0003690 "double-stranded DNA binding"
            evidence=ISO;IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0006590 "thyroid hormone
            generation" evidence=IMP] [GO:0007389 "pattern specification
            process" evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0030878 "thyroid
            gland development" evidence=ISO;IMP] [GO:0031069 "hair follicle
            morphogenesis" evidence=IMP] [GO:0043565 "sequence-specific DNA
            binding" evidence=ISO] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0048562 "embryonic organ morphogenesis"
            evidence=IMP] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0060022
            "hard palate development" evidence=ISO;IBA] [GO:0060023 "soft
            palate development" evidence=ISO;IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 MGI:MGI:1353500
            GO:GO:0016477 GO:GO:0043565 GO:GO:0045944 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0000122
            GO:GO:0008301 GO:GO:0003690 GO:GO:0048538 GO:GO:0008134
            GO:GO:0007389 GO:GO:0060465 GO:GO:0051090 GO:GO:0031069
            GO:GO:0006590 GO:GO:0002089 GO:GO:0060023 eggNOG:COG5025
            GO:GO:0060022 GO:GO:0030878 GeneTree:ENSGT00700000104135 CTD:2304
            HOGENOM:HOG000231286 HOVERGEN:HBG051642 KO:K09398 OMA:TGYQPAG
            GO:GO:0048562 EMBL:AJ457047 EMBL:AL806523 IPI:IPI00153583
            RefSeq:NP_899121.1 UniGene:Mm.354634 ProteinModelPortal:Q8R2I0
            SMR:Q8R2I0 STRING:Q8R2I0 PhosphoSite:Q8R2I0 PRIDE:Q8R2I0
            DNASU:110805 Ensembl:ENSMUST00000095097 GeneID:110805
            KEGG:mmu:110805 UCSC:uc008sto.1 InParanoid:A2AM00 NextBio:364693
            Bgee:Q8R2I0 CleanEx:MM_FOXE1 Genevestigator:Q8R2I0 Uniprot:Q8R2I0
        Length = 371

 Score = 180 (68.4 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 40/105 (38%), Positives = 64/105 (60%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    + +LT+ GIY++I+ERFP+Y  N  +W+NS+RHNL++N  F 
Sbjct:    55 KPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCFL 114

Query:   109 KGVKAS--QGAGHLWNLS-DMEPV-EDAS----KSNWKKNRLKTY 145
             K  + +   G G+ W L  + E + E  S    +  +K++ L TY
Sbjct:   115 KIPREAGRPGKGNYWALDPNAEDMFESGSFLRRRKRFKRSDLSTY 159


>UNIPROTKB|O00358 [details] [associations]
            symbol:FOXE1 "Forkhead box protein E1" species:9606 "Homo
            sapiens" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=ISS;NAS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IDA] [GO:0009653 "anatomical structure morphogenesis"
            evidence=NAS] [GO:0002089 "lens morphogenesis in camera-type eye"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006590 "thyroid hormone generation"
            evidence=ISS;IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0007422 "peripheral nervous system development"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0016477 "cell migration" evidence=ISS;IBA] [GO:0031069 "hair
            follicle morphogenesis" evidence=ISS;IBA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0048484 "enteric nervous system development"
            evidence=IRD] [GO:0048485 "sympathetic nervous system development"
            evidence=IRD] [GO:0048562 "embryonic organ morphogenesis"
            evidence=ISS;IBA] [GO:0048846 "axon extension involved in axon
            guidance" evidence=IRD] [GO:0048937 "lateral line nerve glial cell
            development" evidence=IRD] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0060022 "hard palate development" evidence=IMP]
            [GO:0060023 "soft palate development" evidence=IMP] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0030878 "thyroid gland development" evidence=IEP;IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0048538 "thymus
            development" evidence=IEP] [GO:0060465 "pharynx development"
            evidence=IEP] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0016477 GO:GO:0043565 GO:GO:0045944
            GO:GO:0007422 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0000122 GO:GO:0008301 EMBL:CH471105
            GO:GO:0003690 GO:GO:0048538 GO:GO:0008134 GO:GO:0007389
            GO:GO:0060465 GO:GO:0051090 GO:GO:0031069 GO:GO:0006590
            Orphanet:146 GO:GO:0002089 GO:GO:0060023 eggNOG:COG5025
            GO:GO:0060022 GO:GO:0030878 EMBL:X94553 EMBL:U89995 EMBL:Y13386
            EMBL:AL499604 IPI:IPI00879523 RefSeq:NP_004464.2 UniGene:Hs.159234
            ProteinModelPortal:O00358 SMR:O00358 STRING:O00358
            PhosphoSite:O00358 PRIDE:O00358 DNASU:2304 Ensembl:ENST00000375123
            GeneID:2304 KEGG:hsa:2304 UCSC:uc004axu.3 CTD:2304
            GeneCards:GC09P100615 H-InvDB:HIX0034929 HGNC:HGNC:3806 MIM:241850
            MIM:602617 neXtProt:NX_O00358 Orphanet:95713 Orphanet:1226
            Orphanet:95720 PharmGKB:PA28223 HOGENOM:HOG000231286
            HOVERGEN:HBG051642 InParanoid:O00358 KO:K09398 OMA:TGYQPAG
            GenomeRNAi:2304 NextBio:9355 Bgee:O00358 CleanEx:HS_FOXE1
            CleanEx:HS_TTF2 Genevestigator:O00358 GermOnline:ENSG00000178919
            GO:GO:0048562 Uniprot:O00358
        Length = 373

 Score = 180 (68.4 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 40/105 (38%), Positives = 64/105 (60%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    + +LT+ GIY++I+ERFP+Y  N  +W+NS+RHNL++N  F 
Sbjct:    53 KPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCFL 112

Query:   109 KGVKAS--QGAGHLWNLS-DMEPV-EDAS----KSNWKKNRLKTY 145
             K  + +   G G+ W L  + E + E  S    +  +K++ L TY
Sbjct:   113 KIPREAGRPGKGNYWALDPNAEDMFESGSFLRRRKRFKRSDLSTY 157


>UNIPROTKB|F1SSG9 [details] [associations]
            symbol:FOXE1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0060465 "pharynx development" evidence=IEA] [GO:0060023
            "soft palate development" evidence=IEA] [GO:0060022 "hard palate
            development" evidence=IEA] [GO:0048562 "embryonic organ
            morphogenesis" evidence=IEA] [GO:0048538 "thymus development"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0031069 "hair follicle
            morphogenesis" evidence=IEA] [GO:0030878 "thyroid gland
            development" evidence=IEA] [GO:0016477 "cell migration"
            evidence=IEA] [GO:0006590 "thyroid hormone generation"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0045893 GO:GO:0016477
            GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0048538 GO:GO:0060465 GO:GO:0031069
            GO:GO:0006590 GO:GO:0060023 GO:GO:0060022 GO:GO:0030878
            GeneTree:ENSGT00700000104135 KO:K09398 OMA:TGYQPAG GO:GO:0048562
            EMBL:CU234153 RefSeq:XP_001925267.1 UniGene:Ssc.95528
            Ensembl:ENSSSCT00000005909 GeneID:100157892 KEGG:ssc:100157892
            Uniprot:F1SSG9
        Length = 373

 Score = 180 (68.4 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 40/105 (38%), Positives = 64/105 (60%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+    + +LT+ GIY++I+ERFP+Y  N  +W+NS+RHNL++N  F 
Sbjct:    54 KPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCFL 113

Query:   109 KGVKAS--QGAGHLWNLS-DMEPV-EDAS----KSNWKKNRLKTY 145
             K  + +   G G+ W L  + E + E  S    +  +K++ L TY
Sbjct:   114 KIPREAGRPGKGNYWALDPNAEDMFESGSFLRRRKRFKRSDLSTY 158


>UNIPROTKB|E1BNF3 [details] [associations]
            symbol:FOXJ1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:1901248 "positive regulation of lung ciliated cell
            differentiation" evidence=IEA] [GO:0072016 "glomerular parietal
            epithelial cell development" evidence=IEA] [GO:0060972 "left/right
            pattern formation" evidence=IEA] [GO:0050900 "leukocyte migration"
            evidence=IEA] [GO:0050869 "negative regulation of B cell
            activation" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045409 "negative regulation of interleukin-6 biosynthetic
            process" evidence=IEA] [GO:0042384 "cilium assembly" evidence=IEA]
            [GO:0042130 "negative regulation of T cell proliferation"
            evidence=IEA] [GO:0035502 "metanephric part of ureteric bud
            development" evidence=IEA] [GO:0035089 "establishment of
            apical/basal cell polarity" evidence=IEA] [GO:0033085 "negative
            regulation of T cell differentiation in thymus" evidence=IEA]
            [GO:0032862 "activation of Rho GTPase activity" evidence=IEA]
            [GO:0032088 "negative regulation of NF-kappaB transcription factor
            activity" evidence=IEA] [GO:0030036 "actin cytoskeleton
            organization" evidence=IEA] [GO:0007420 "brain development"
            evidence=IEA] [GO:0006959 "humoral immune response" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0002924 "negative
            regulation of humoral immune response mediated by circulating
            immunoglobulin" evidence=IEA] [GO:0002897 "positive regulation of
            central B cell tolerance induction" evidence=IEA] [GO:0002635
            "negative regulation of germinal center formation" evidence=IEA]
            [GO:0002508 "central tolerance induction" evidence=IEA] [GO:0000976
            "transcription regulatory region sequence-specific DNA binding"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0042130 GO:GO:0030036
            GO:GO:0050900 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000122
            GO:GO:0042384 GO:GO:0032088 GO:GO:0006959 GO:GO:0033085
            GO:GO:0032862 GO:GO:0060972 GO:GO:0030856 GO:GO:0002924 CTD:2302
            KO:K09402 OMA:PVHIHPA GO:GO:0002508 GO:GO:0035089 GO:GO:0050869
            GO:GO:0002635 GO:GO:0045409 GO:GO:0002897
            GeneTree:ENSGT00700000104094 EMBL:DAAA02049505 IPI:IPI00705820
            RefSeq:NP_001179005.1 UniGene:Bt.88381 Ensembl:ENSBTAT00000010408
            GeneID:505891 KEGG:bta:505891 NextBio:20867364 Uniprot:E1BNF3
        Length = 421

 Score = 181 (68.8 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 47/133 (35%), Positives = 67/133 (50%)

Query:    14 PGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKH--QLT 71
             PG+  P   C TS   P   Q+   D    +    H KPP++Y  LI  A++     ++T
Sbjct:    88 PGK--PTSSC-TSRSAPPGLQAPPPDDVDYA-TNPHVKPPYSYATLICMAMQASKATKIT 143

Query:    72 VSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRK--GVKASQGAGHLWNLSDMEPV 129
             +S IY+WI++ F Y+   D  W+NS+RHNLS+N  F K    K   G G  W + D +  
Sbjct:   144 LSAIYKWITDNFCYFRHADPTWQNSIRHNLSLNKCFIKVPREKDEPGKGGFWRI-DPQYA 202

Query:   130 EDASKSNWKKNRL 142
             E      +KK RL
Sbjct:   203 ERLLSGAFKKRRL 215


>UNIPROTKB|F1RWM7 [details] [associations]
            symbol:FOXJ1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:1901248 "positive regulation of lung ciliated cell
            differentiation" evidence=IEA] [GO:0072016 "glomerular parietal
            epithelial cell development" evidence=IEA] [GO:0060972 "left/right
            pattern formation" evidence=IEA] [GO:0050900 "leukocyte migration"
            evidence=IEA] [GO:0050869 "negative regulation of B cell
            activation" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0045409 "negative regulation of interleukin-6 biosynthetic
            process" evidence=IEA] [GO:0042384 "cilium assembly" evidence=IEA]
            [GO:0042130 "negative regulation of T cell proliferation"
            evidence=IEA] [GO:0035502 "metanephric part of ureteric bud
            development" evidence=IEA] [GO:0035089 "establishment of
            apical/basal cell polarity" evidence=IEA] [GO:0033085 "negative
            regulation of T cell differentiation in thymus" evidence=IEA]
            [GO:0032862 "activation of Rho GTPase activity" evidence=IEA]
            [GO:0032088 "negative regulation of NF-kappaB transcription factor
            activity" evidence=IEA] [GO:0030036 "actin cytoskeleton
            organization" evidence=IEA] [GO:0007420 "brain development"
            evidence=IEA] [GO:0006959 "humoral immune response" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0002924 "negative
            regulation of humoral immune response mediated by circulating
            immunoglobulin" evidence=IEA] [GO:0002897 "positive regulation of
            central B cell tolerance induction" evidence=IEA] [GO:0002635
            "negative regulation of germinal center formation" evidence=IEA]
            [GO:0002508 "central tolerance induction" evidence=IEA] [GO:0000976
            "transcription regulatory region sequence-specific DNA binding"
            evidence=IEA] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0042130 GO:GO:0030036
            GO:GO:0050900 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000122
            GO:GO:0042384 GO:GO:0032088 GO:GO:0006959 GO:GO:0033085
            GO:GO:0032862 GO:GO:0060972 GO:GO:0030856 GO:GO:0002924 CTD:2302
            KO:K09402 OMA:PVHIHPA GO:GO:0002508 GO:GO:0035089 GO:GO:0050869
            GO:GO:0002635 GO:GO:0045409 GO:GO:0002897
            GeneTree:ENSGT00700000104094 EMBL:FP680578 RefSeq:XP_003358007.1
            Ensembl:ENSSSCT00000018712 GeneID:100623071 KEGG:ssc:100623071
            Uniprot:F1RWM7
        Length = 421

 Score = 181 (68.8 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 47/133 (35%), Positives = 67/133 (50%)

Query:    14 PGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKH--QLT 71
             PG+  P   C TS   P   Q+   D    +    H KPP++Y  LI  A++     ++T
Sbjct:    88 PGK--PTSSC-TSRSAPPGLQAPPPDDVDYA-TNPHVKPPYSYATLICMAMQASKATKIT 143

Query:    72 VSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRK--GVKASQGAGHLWNLSDMEPV 129
             +S IY+WI++ F Y+   D  W+NS+RHNLS+N  F K    K   G G  W + D +  
Sbjct:   144 LSAIYKWITDNFCYFRHADPTWQNSIRHNLSLNKCFIKVPREKDEPGKGGFWRI-DPQYA 202

Query:   130 EDASKSNWKKNRL 142
             E      +KK RL
Sbjct:   203 ERLLSGAFKKRRL 215


>MGI|MGI:1347474 [details] [associations]
            symbol:Foxj1 "forkhead box J1" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IMP] [GO:0000976 "transcription
            regulatory region sequence-specific DNA binding" evidence=ISO]
            [GO:0001947 "heart looping" evidence=IBA] [GO:0002508 "central
            tolerance induction" evidence=IMP] [GO:0002635 "negative regulation
            of germinal center formation" evidence=IMP] [GO:0002897 "positive
            regulation of central B cell tolerance induction" evidence=IMP]
            [GO:0002924 "negative regulation of humoral immune response
            mediated by circulating immunoglobulin" evidence=IMP] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0003690 "double-stranded DNA
            binding" evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006959 "humoral immune response"
            evidence=IMP] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0019904 "protein domain specific binding" evidence=IBA]
            [GO:0030036 "actin cytoskeleton organization" evidence=IMP]
            [GO:0030324 "lung development" evidence=IBA] [GO:0030855
            "epithelial cell differentiation" evidence=IBA] [GO:0030856
            "regulation of epithelial cell differentiation" evidence=IDA]
            [GO:0032088 "negative regulation of NF-kappaB transcription factor
            activity" evidence=IMP] [GO:0032862 "activation of Rho GTPase
            activity" evidence=IDA] [GO:0033085 "negative regulation of T cell
            differentiation in thymus" evidence=IMP] [GO:0035089 "establishment
            of apical/basal cell polarity" evidence=IMP] [GO:0042130 "negative
            regulation of T cell proliferation" evidence=IMP] [GO:0042384
            "cilium assembly" evidence=IMP] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0045409 "negative regulation of
            interleukin-6 biosynthetic process" evidence=IMP] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISO;IDA] [GO:0050869 "negative regulation of B
            cell activation" evidence=IMP] [GO:0050900 "leukocyte migration"
            evidence=IMP] [GO:0060271 "cilium morphogenesis" evidence=IGI]
            [GO:0060972 "left/right pattern formation" evidence=IMP]
            [GO:1901248 "positive regulation of lung ciliated cell
            differentiation" evidence=ISO] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 MGI:MGI:1347474
            GO:GO:0019904 GO:GO:0007420 GO:GO:0042130 GO:GO:0030036
            GO:GO:0030324 GO:GO:0050900 GO:GO:0043565 GO:GO:0045944
            Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CH466558 GO:GO:0005667
            GO:GO:0003705 GO:GO:0000122 GO:GO:0008301 GO:GO:0003690
            GO:GO:0042384 GO:GO:0001947 GO:GO:0032088 GO:GO:0008134
            GO:GO:0006959 GO:GO:0030855 GO:GO:0033085 GO:GO:0032862
            eggNOG:COG5025 GO:GO:0060972 GO:GO:0030856 GO:GO:0002924 CTD:2302
            HOGENOM:HOG000112631 HOVERGEN:HBG056832 KO:K09402 OMA:PVHIHPA
            OrthoDB:EOG40CHH5 GO:GO:0002508 GO:GO:0035089 GO:GO:0050869
            GO:GO:0002635 GO:GO:0045409 GO:GO:0002897 EMBL:L13204 EMBL:AK140847
            EMBL:AL645861 IPI:IPI00123682 PIR:I49734 RefSeq:NP_032266.3
            UniGene:Mm.378938 ProteinModelPortal:Q61660 SMR:Q61660
            STRING:Q61660 Ensembl:ENSMUST00000036215 GeneID:15223
            KEGG:mmu:15223 GeneTree:ENSGT00700000104094 InParanoid:Q3US42
            ChiTaRS:FOXJ1 NextBio:287811 Bgee:Q61660 CleanEx:MM_FOXJ1
            Genevestigator:Q61660 GermOnline:ENSMUSG00000034227 Uniprot:Q61660
        Length = 421

 Score = 181 (68.8 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 47/133 (35%), Positives = 67/133 (50%)

Query:    14 PGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKH--QLT 71
             PG+  P   C TS   P   Q+   D    +    H KPP++Y  LI  A++     ++T
Sbjct:    88 PGK--PTSSC-TSRSAPPGLQAPPPDDVDYA-TNPHVKPPYSYATLICMAMQASKATKIT 143

Query:    72 VSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRK--GVKASQGAGHLWNLSDMEPV 129
             +S IY+WI++ F Y+   D  W+NS+RHNLS+N  F K    K   G G  W + D +  
Sbjct:   144 LSAIYKWITDNFCYFRHADPTWQNSIRHNLSLNKCFIKVPREKDEPGKGGFWRI-DPQYA 202

Query:   130 EDASKSNWKKNRL 142
             E      +KK RL
Sbjct:   203 ERLLSGAFKKRRL 215


>RGD|621764 [details] [associations]
            symbol:Foxj1 "forkhead box J1" species:10116 "Rattus norvegicus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0000976 "transcription
            regulatory region sequence-specific DNA binding" evidence=ISO]
            [GO:0001947 "heart looping" evidence=IBA] [GO:0002508 "central
            tolerance induction" evidence=ISO] [GO:0002635 "negative regulation
            of germinal center formation" evidence=ISO;IBA] [GO:0002897
            "positive regulation of central B cell tolerance induction"
            evidence=ISO;IBA] [GO:0002924 "negative regulation of humoral
            immune response mediated by circulating immunoglobulin"
            evidence=ISO;IBA] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006959 "humoral immune response" evidence=ISO]
            [GO:0007283 "spermatogenesis" evidence=IEP] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0014070 "response to organic
            cyclic compound" evidence=IEP] [GO:0019904 "protein domain specific
            binding" evidence=IBA] [GO:0030036 "actin cytoskeleton
            organization" evidence=ISO;IBA] [GO:0030324 "lung development"
            evidence=IBA] [GO:0030855 "epithelial cell differentiation"
            evidence=IBA] [GO:0030856 "regulation of epithelial cell
            differentiation" evidence=ISO] [GO:0032088 "negative regulation of
            NF-kappaB transcription factor activity" evidence=ISO;IBA]
            [GO:0032355 "response to estradiol stimulus" evidence=IEP]
            [GO:0032862 "activation of Rho GTPase activity" evidence=ISO;IBA]
            [GO:0033085 "negative regulation of T cell differentiation in
            thymus" evidence=ISO;IBA] [GO:0035089 "establishment of
            apical/basal cell polarity" evidence=ISO;IBA] [GO:0035502
            "metanephric part of ureteric bud development" evidence=ISO]
            [GO:0042130 "negative regulation of T cell proliferation"
            evidence=ISO;IBA] [GO:0042384 "cilium assembly" evidence=ISO;IBA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0045409 "negative regulation of interleukin-6 biosynthetic
            process" evidence=ISO;IBA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0050869 "negative regulation of B cell activation"
            evidence=ISO;IBA] [GO:0050900 "leukocyte migration"
            evidence=ISO;IBA] [GO:0060271 "cilium morphogenesis" evidence=ISO]
            [GO:0060428 "lung epithelium development" evidence=ISO] [GO:0060972
            "left/right pattern formation" evidence=ISO;IBA] [GO:0071363
            "cellular response to growth factor stimulus" evidence=IEP]
            [GO:0072016 "glomerular parietal epithelial cell development"
            evidence=ISO] [GO:1901248 "positive regulation of lung ciliated
            cell differentiation" evidence=ISO] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 RGD:621764
            GO:GO:0019904 GO:GO:0071363 GO:GO:0042130 GO:GO:0032355
            GO:GO:0030036 GO:GO:0030324 GO:GO:0050900 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0007283 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0003690 GO:GO:0042384
            GO:GO:0001947 GO:GO:0032088 GO:GO:0008134 GO:GO:0030855
            GO:GO:0033085 GO:GO:0032862 GO:GO:0060972 GO:GO:0002924 CTD:2302
            HOVERGEN:HBG056832 KO:K09402 GO:GO:0035089 GO:GO:0050869
            GO:GO:0002635 GO:GO:0045409 GO:GO:0002897 EMBL:L36388
            IPI:IPI00206922 RefSeq:NP_446284.1 UniGene:Rn.202954
            ProteinModelPortal:Q63247 SMR:Q63247 GeneID:116557 KEGG:rno:116557
            NextBio:619213 Genevestigator:Q63247 Uniprot:Q63247
        Length = 421

 Score = 181 (68.8 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 47/133 (35%), Positives = 67/133 (50%)

Query:    14 PGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKH--QLT 71
             PG+  P   C TS   P   Q+   D    +    H KPP++Y  LI  A++     ++T
Sbjct:    88 PGK--PTSSC-TSRSAPPGLQAPPPDDVDYA-TNPHVKPPYSYATLICMAMQASKATKIT 143

Query:    72 VSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRK--GVKASQGAGHLWNLSDMEPV 129
             +S IY+WI++ F Y+   D  W+NS+RHNLS+N  F K    K   G G  W + D +  
Sbjct:   144 LSAIYKWITDNFCYFRHADPTWQNSIRHNLSLNKCFIKVPREKDEPGKGGFWRI-DPQYA 202

Query:   130 EDASKSNWKKNRL 142
             E      +KK RL
Sbjct:   203 ERLLSGAFKKRRL 215


>UNIPROTKB|Q12948 [details] [associations]
            symbol:FOXC1 "Forkhead box protein C1" species:9606 "Homo
            sapiens" [GO:0001501 "skeletal system development" evidence=IEA]
            [GO:0001701 "in utero embryonic development" evidence=IEA]
            [GO:0014032 "neural crest cell development" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0042475 "odontogenesis of dentin-containing
            tooth" evidence=IMP] [GO:0001503 "ossification" evidence=IBA]
            [GO:0001541 "ovarian follicle development" evidence=IBA]
            [GO:0001570 "vasculogenesis" evidence=IBA] [GO:0001656 "metanephros
            development" evidence=IBA] [GO:0001657 "ureteric bud development"
            evidence=IBA] [GO:0001756 "somitogenesis" evidence=IBA] [GO:0001946
            "lymphangiogenesis" evidence=IBA] [GO:0001974 "blood vessel
            remodeling" evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007219 "Notch signaling pathway" evidence=IBA]
            [GO:0007420 "brain development" evidence=IBA] [GO:0008354 "germ
            cell migration" evidence=IBA] [GO:0014034 "neural crest cell fate
            commitment" evidence=IBA] [GO:0030199 "collagen fibril
            organization" evidence=IBA] [GO:0030203 "glycosaminoglycan
            metabolic process" evidence=IBA] [GO:0031490 "chromatin DNA
            binding" evidence=IBA] [GO:0032808 "lacrimal gland development"
            evidence=IBA] [GO:0035050 "embryonic heart tube development"
            evidence=IBA] [GO:0043010 "camera-type eye development"
            evidence=IBA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS;IDA;IBA] [GO:0046620
            "regulation of organ growth" evidence=IBA] [GO:0048010 "vascular
            endothelial growth factor receptor signaling pathway" evidence=IBA]
            [GO:0048343 "paraxial mesodermal cell fate commitment"
            evidence=IBA] [GO:0048844 "artery morphogenesis" evidence=IBA]
            [GO:0050880 "regulation of blood vessel size" evidence=IBA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0055010
            "ventricular cardiac muscle tissue morphogenesis" evidence=IBA]
            [GO:0060038 "cardiac muscle cell proliferation" evidence=IBA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IDA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IDA] [GO:0045930 "negative regulation of mitotic
            cell cycle" evidence=IDA] [GO:0005634 "nucleus" evidence=IC;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IDA;NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0008134 "transcription factor binding"
            evidence=IPI] [GO:0008301 "DNA binding, bending" evidence=IDA]
            [GO:0003677 "DNA binding" evidence=IDA] [GO:0005720 "nuclear
            heterochromatin" evidence=IDA] [GO:0001654 "eye development"
            evidence=IDA] [GO:0007507 "heart development" evidence=IDA]
            [GO:0044212 "transcription regulatory region DNA binding"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0005737 GO:GO:0007420
            GO:GO:0043565 GO:GO:0001701 GO:GO:0005720 GO:GO:0030199
            GO:GO:0045944 GO:GO:0007219 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0001756
            GO:GO:0043010 GO:GO:0044212 GO:GO:0001501 GO:GO:0001974
            GO:GO:0003690 GO:GO:0001541 GO:GO:0001946 GO:GO:0001570
            GO:GO:0042475 GO:GO:0014032 GO:GO:0050880 GO:GO:0001503
            GO:GO:0048844 GO:GO:0031490 GO:GO:0001656 GO:GO:0001657
            GO:GO:0051090 GO:GO:0046620 GO:GO:0048010 GO:GO:0045930
            GO:GO:0060038 GO:GO:0055010 GO:GO:0030203 MIM:604229 Orphanet:708
            eggNOG:COG5025 KO:K09396 GO:GO:0035050 GO:GO:0008354 GO:GO:0032808
            EMBL:AF048693 EMBL:AF078096 EMBL:AY228704 EMBL:AL034344 EMBL:L12143
            EMBL:U13221 IPI:IPI00290377 PIR:S51626 RefSeq:NP_001444.2
            UniGene:Hs.348883 ProteinModelPortal:Q12948 SMR:Q12948
            IntAct:Q12948 STRING:Q12948 PhosphoSite:Q12948 DMDM:13638267
            PaxDb:Q12948 PRIDE:Q12948 Ensembl:ENST00000380874 GeneID:2296
            KEGG:hsa:2296 UCSC:uc003mtp.3 CTD:2296 GeneCards:GC06P001610
            H-InvDB:HIX0032962 HGNC:HGNC:3800 HPA:HPA040670 MIM:601090
            MIM:601631 MIM:602482 neXtProt:NX_Q12948 Orphanet:98978
            Orphanet:782 Orphanet:91483 PharmGKB:PA28217 HOVERGEN:HBG051640
            InParanoid:Q12948 OMA:QRIGLNN OrthoDB:EOG479F8T PhylomeDB:Q12948
            GenomeRNAi:2296 NextBio:9319 ArrayExpress:Q12948 Bgee:Q12948
            CleanEx:HS_FOXC1 Genevestigator:Q12948 GermOnline:ENSG00000054598
            GO:GO:0014034 GO:GO:0048343 Uniprot:Q12948
        Length = 553

 Score = 183 (69.5 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 53/159 (33%), Positives = 80/159 (50%)

Query:    51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A++     ++T++GIYQ+I +RFP+Y  N   W+NS+RHNLS+N  F 
Sbjct:    78 KPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIRHNLSLNECFV 137

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTE 165
             K  +  +  G G  W L  D   + +      ++ R K   ++++  E  D     +  E
Sbjct:   138 KVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKK-DAVKDKEEKDRL---HLKE 193

Query:   166 TPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKT 204
              P P  +  P P P P      A  P QP  V  Q+ KT
Sbjct:   194 PPPPGRQ--PPPAP-PEQADGNAPGP-QPPPVRIQDIKT 228


>MGI|MGI:102949 [details] [associations]
            symbol:Foxn1 "forkhead box N1" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0001942 "hair follicle
            development" evidence=IMP] [GO:0002260 "lymphocyte homeostasis"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0008283 "cell proliferation" evidence=IDA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0008544 "epidermis development"
            evidence=IMP] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0030216 "keratinocyte differentiation" evidence=ISO;IDA]
            [GO:0033081 "regulation of T cell differentiation in thymus"
            evidence=IMP] [GO:0035878 "nail development" evidence=IMP]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0048538 "thymus development" evidence=ISO;IMP;IBA] [GO:0050673
            "epithelial cell proliferation" evidence=IDA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 MGI:MGI:102949 GO:GO:0030216
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0000122 GO:GO:0008301 GO:GO:0009790
            GO:GO:0003690 GO:GO:0033081 GO:GO:0048538 GO:GO:0008134
            GO:GO:0050673 GO:GO:0007389 GO:GO:0051090 eggNOG:COG5025
            GeneTree:ENSGT00700000104051 CTD:8456 HOGENOM:HOG000059593
            HOVERGEN:HBG051653 KO:K09407 OMA:PAPQSKH OrthoDB:EOG4DZ1TZ
            EMBL:X81593 IPI:IPI00122489 RefSeq:NP_032264.1 UniGene:Mm.4496
            ProteinModelPortal:Q61575 SMR:Q61575 STRING:Q61575
            PhosphoSite:Q61575 PRIDE:Q61575 Ensembl:ENSMUST00000108294
            GeneID:15218 KEGG:mmu:15218 InParanoid:Q61575 NextBio:287799
            Bgee:Q61575 CleanEx:MM_FOXN1 Genevestigator:Q61575
            GermOnline:ENSMUSG00000002057 GO:GO:0002260 Uniprot:Q61575
        Length = 648

 Score = 184 (69.8 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 63/204 (30%), Positives = 91/204 (44%)

Query:     3 YASLEPM--ELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELI 60
             Y S +P   +  P G   P+ P   S H P   Q          H     KP ++Y+ LI
Sbjct:   224 YCSSQPAFHQYSPGGGSYPV-PYLGSPHYPY--QRIAPQANAEGHQPLFPKPIYSYSILI 280

Query:    61 EQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA- 117
               ALK      L VS IY +++E FPY+    D WKNSVRHNLS+N  F K V+   G+ 
Sbjct:   281 FMALKNSKTGSLPVSEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEK-VENKSGSS 339

Query:   118 ---GHLW--NLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSME 172
                G LW  N S ++ +++  +  WK+       +S+   E  D   G    +  +P + 
Sbjct:   340 SRKGCLWALNPSKIDKMQEELQK-WKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLG 398

Query:   173 TMPQ--PQPQPLNTMSLAHDPLQP 194
               P     P P+  M+ +    QP
Sbjct:   399 CPPPGLAGPGPIRPMAPSAGLSQP 422


>UNIPROTKB|F1S012 [details] [associations]
            symbol:LOC100522272 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000287
            "magnesium ion binding" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR000253 InterPro:IPR001766
            InterPro:IPR008984 InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006
            PROSITE:PS50039 SMART:SM00240 SMART:SM00339 GO:GO:0005634
            GO:GO:0000287 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 Gene3D:2.60.200.20 SUPFAM:SSF49879 OMA:HGQVNNA
            EMBL:FP085448 RefSeq:XP_003357968.1 Ensembl:ENSSSCT00000018643
            GeneID:100522272 Uniprot:F1S012
        Length = 656

 Score = 184 (69.8 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 54/168 (32%), Positives = 84/168 (50%)

Query:    33 SQSEVEDRCCPSHA-KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQN 89
             SQ E E       + K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY   
Sbjct:   237 SQPENEKEASGGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTA 296

Query:    90 DDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDASKSNWKKNR--L 142
             D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + +E A +    +     
Sbjct:   297 DKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPRGVPCF 356

Query:   143 KTYLESLQ-------PSEWGDDYSGQNSTETPAP-SMETMPQP-QPQP 181
             +T L  L        P+  G   +  +  +TP   S E  P P +P+P
Sbjct:   357 RTPLGPLSSRSAPASPNHAGVLSAHSSGAQTPESLSREGSPAPLEPEP 404


>UNIPROTKB|Q01167 [details] [associations]
            symbol:FOXK2 "Forkhead box protein K2" species:9606 "Homo
            sapiens" [GO:0003690 "double-stranded DNA binding" evidence=IBA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0009790
            "embryo development" evidence=IBA] [GO:0009888 "tissue development"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] [GO:0000287
            "magnesium ion binding" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IC;IDA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=NAS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0043231 "intracellular
            membrane-bounded organelle" evidence=IDA] InterPro:IPR000253
            InterPro:IPR001766 InterPro:IPR008984 InterPro:IPR018122
            Pfam:PF00250 Pfam:PF00498 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50006 PROSITE:PS50039 SMART:SM00240
            SMART:SM00339 GO:GO:0000287 GO:GO:0043565 Gene3D:1.10.10.10
            InterPro:IPR011991 Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0009790 GO:GO:0003690
            GO:GO:0008134 GO:GO:0007389 GO:GO:0051090 eggNOG:COG5025
            GO:GO:0009888 HOGENOM:HOG000072588 HOVERGEN:HBG051649 KO:K09404
            EMBL:X60787 EMBL:U58196 EMBL:U58197 EMBL:U58198 EMBL:AC124287
            IPI:IPI00006029 IPI:IPI00220426 IPI:IPI00479612 PIR:A41285
            RefSeq:NP_004505.2 UniGene:Hs.591140 PDB:1JXS PDB:2C6Y PDBsum:1JXS
            PDBsum:2C6Y ProteinModelPortal:Q01167 SMR:Q01167 IntAct:Q01167
            STRING:Q01167 PhosphoSite:Q01167 DMDM:118572648 PaxDb:Q01167
            PRIDE:Q01167 Ensembl:ENST00000335255 Ensembl:ENST00000473637
            GeneID:3607 KEGG:hsa:3607 UCSC:uc002kfm.1 UCSC:uc002kfn.3
            UCSC:uc010diu.3 CTD:3607 GeneCards:GC17P080477 H-InvDB:HIX0014279
            HGNC:HGNC:6036 HPA:HPA027523 MIM:147685 neXtProt:NX_Q01167
            PharmGKB:PA29851 InParanoid:Q01167 OMA:HGQVNNA OrthoDB:EOG4XD3QX
            PhylomeDB:Q01167 ChiTaRS:FOXK2 EvolutionaryTrace:Q01167
            GenomeRNAi:3607 NextBio:14097 ArrayExpress:Q01167 Bgee:Q01167
            CleanEx:HS_FOXK2 Genevestigator:Q01167 GermOnline:ENSG00000141568
            Uniprot:Q01167
        Length = 660

 Score = 184 (69.8 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 54/168 (32%), Positives = 84/168 (50%)

Query:    33 SQSEVEDRCCPSHA-KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQN 89
             SQ E E       + K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY   
Sbjct:   239 SQPENEKEASGGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTA 298

Query:    90 DDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDASKSNWKKNR--L 142
             D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + +E A +    +     
Sbjct:   299 DKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPRGVPCF 358

Query:   143 KTYLESLQ-------PSEWGDDYSGQNSTETPAP-SMETMPQP-QPQP 181
             +T L  L        P+  G   +  +  +TP   S E  P P +P+P
Sbjct:   359 RTPLGPLSSRSAPASPNHAGVLSAHSSGAQTPESLSREGSPAPLEPEP 406


>ZFIN|ZDB-GENE-990616-47 [details] [associations]
            symbol:foxb1.2 "forkhead box B1.2" species:7955
            "Danio rerio" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0008301
            "DNA binding, bending" evidence=IBA] [GO:0003690 "double-stranded
            DNA binding" evidence=IBA] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0009888 "tissue development"
            evidence=IBA] [GO:0007420 "brain development" evidence=IBA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0033504 "floor
            plate development" evidence=ISS] [GO:0061374 "mammillothalamic
            axonal tract development" evidence=ISS] [GO:0061379 "inferior
            colliculus development" evidence=ISS] [GO:0008542 "visual learning"
            evidence=ISS] [GO:0007412 "axon target recognition" evidence=ISS]
            [GO:0001756 "somitogenesis" evidence=ISS] [GO:0005634 "nucleus"
            evidence=IEA;ISS] [GO:0043524 "negative regulation of neuron
            apoptotic process" evidence=ISS] [GO:0061381 "cell migration in
            diencephalon" evidence=ISS] [GO:0021855 "hypothalamus cell
            migration" evidence=ISS] [GO:0022029 "telencephalon cell migration"
            evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-990616-47 GO:GO:0043565 GO:GO:0008542 GO:GO:0043524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0001756 GO:GO:0003690 GO:GO:0008134
            GO:GO:0051090 GO:GO:0007412 GO:GO:0033504 eggNOG:COG5025
            GO:GO:0009888 GO:GO:0022029 GeneTree:ENSGT00700000104135
            HOGENOM:HOG000007545 HOVERGEN:HBG102104 KO:K09395 OMA:AREYKVP
            OrthoDB:EOG40GCRF GO:GO:0061381 GO:GO:0021855 GO:GO:0061379
            GO:GO:0061374 HSSP:Q63245 EMBL:CU462819 EMBL:CU929228 EMBL:AF052246
            EMBL:BC056754 EMBL:BC066395 IPI:IPI00513060 RefSeq:NP_571360.1
            RefSeq:XP_003201510.1 RefSeq:XP_003201511.1 UniGene:Dr.75814
            SMR:O73779 STRING:O73779 Ensembl:ENSDART00000125036
            Ensembl:ENSDART00000128240 GeneID:100535158 GeneID:30542
            KEGG:dre:100535158 KEGG:dre:30542 CTD:30542 InParanoid:O73779
            NextBio:20806922 Uniprot:O73779
        Length = 297

 Score = 168 (64.2 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 44/114 (38%), Positives = 62/114 (54%)

Query:    50 RKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  L   A++   +  L +S IY++I +RFPYY +N  RW+NS+RHNLS N  F
Sbjct:    12 QKPPYSYISLTAMAIQSCPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRHNLSFNDCF 71

Query:   108 RKGVKASQ--GAGHLWNL--SDMEPVEDASKSNWKKNRLKTYL-ESLQPSEWGD 156
              K  +     G G  W L  S  +  E+ S    +K R K    E L PS+  D
Sbjct:    72 IKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK-RFKVMTSEHLAPSKPSD 124

 Score = 44 (20.5 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 17/64 (26%), Positives = 22/64 (34%)

Query:   158 YSGQNSTETPAPSMET---MPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVL 214
             + GQ     P P   T   +P   P  L+    +  P  P    SQ S   P E      
Sbjct:   230 HGGQTLPAIPVPIKPTPAALPHHIPAFLSNSPQSLSPTSPQTATSQSSPATPSETLTGPA 289

Query:   215 YIQS 218
              +QS
Sbjct:   290 TLQS 293


>ZFIN|ZDB-GENE-070410-88 [details] [associations]
            symbol:zgc:162612 "zgc:162612" species:7955 "Danio
            rerio" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-070410-88 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 eggNOG:COG5025
            GeneTree:ENSGT00700000104135 HOGENOM:HOG000231285 EMBL:FP016243
            EMBL:BC135031 IPI:IPI00846054 RefSeq:NP_001082957.1
            UniGene:Dr.87458 SMR:A4IGC7 Ensembl:ENSDART00000113780
            GeneID:100037333 KEGG:dre:100037333 OMA:SDMFENG NextBio:20788507
            Uniprot:A4IGC7
        Length = 308

 Score = 177 (67.4 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 56/178 (31%), Positives = 90/178 (50%)

Query:    18 SPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHR--KPPFTYTELIEQALKE--KHQLTVS 73
             SP+       +K E  ++ V    CPS +      KPP++Y  LI  A+ +  K +LT+S
Sbjct:    31 SPLSASDQVHNKDE--ENHVPSSICPSSSSKSSSVKPPYSYIALITMAILQSPKKRLTLS 88

Query:    74 GIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNL----SDME 127
              I  +IS RF YY +    W+NS+RHNLS+N  F K  +   + G G+ W L    SDM 
Sbjct:    89 EICDFISHRFVYYREKFPAWQNSIRHNLSLNDCFVKMPREPGNPGKGNYWTLDPNSSDM- 147

Query:   128 PVEDAS----KSNWKKNRLKTYL---ESLQPSEWGD-DYS--GQNSTETPAPSMETMP 175
               E+ S    +  +K+   K  +   ++LQPS + +  Y   G +++    P+++  P
Sbjct:   148 -FENGSFLRRRKRFKRQHFKFGVFKDQALQPSGFPNLSYGAYGLSASCAHLPALDVYP 204


>UNIPROTKB|Q32NH9 [details] [associations]
            symbol:foxj1.2 "Forkhead box protein J1.2" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 HSSP:Q01167 HOVERGEN:HBG056832
            EMBL:BC108616 RefSeq:NP_001089890.1 UniGene:Xl.55428
            ProteinModelPortal:Q32NH9 SMR:Q32NH9 GeneID:734957 KEGG:xla:734957
            CTD:734957 Xenbase:XB-GENE-919747 Uniprot:Q32NH9
        Length = 370

 Score = 172 (65.6 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 40/98 (40%), Positives = 55/98 (56%)

Query:    30 PEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYN 87
             P P Q EV+ R   ++A    KPP++Y  LI  A++   Q  LT+S IY WI++ F YY 
Sbjct:    93 PSPVQ-EVDYR---TNANV--KPPYSYATLICMAMEASQQRKLTLSAIYNWITQNFCYYR 146

Query:    88 QNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL 123
               D  W+NS+RHNLS+N  F K  +     G G  W +
Sbjct:   147 HADPSWQNSIRHNLSLNKCFMKVPRGKDEPGKGGFWQM 184

 Score = 45 (20.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 27/94 (28%), Positives = 37/94 (39%)

Query:   128 PVEDASKSNWKKNRLKTYLESLQPSEWGDDY--SGQNSTETPAPSMETMPQPQPQPLNTM 185
             P +    SN+    L+  L S+    W  D   S  NST T    M+   Q  P   N  
Sbjct:   268 PEDPLQGSNFDDLDLQAALISMC---WEGDLAASNLNSTLTGNSGMDMNQQDPPMQDNHW 324

Query:   186 SLAHDPLQPFEVYSQESKTFP-YEEC---KDVLY 215
              L+ +  Q +E   +E      Y E    +DVLY
Sbjct:   325 YLSTEGQQTWEQVKEEPVVEQWYSETGFVEDVLY 358


>FB|FBgn0014143 [details] [associations]
            symbol:croc "crocodile" species:7227 "Drosophila
            melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0007380
            "specification of segmental identity, head" evidence=NAS;IMP]
            [GO:0003677 "DNA binding" evidence=NAS;IDA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0009888 "tissue
            development" evidence=IBA] [GO:0009653 "anatomical structure
            morphogenesis" evidence=IBA] [GO:0048513 "organ development"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            EMBL:AE014296 GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0003690
            GO:GO:0008134 GO:GO:0009653 GO:GO:0051090 GO:GO:0048513 EMBL:S80254
            EMBL:M96440 PIR:S59870 RefSeq:NP_524202.1 UniGene:Dm.5749
            ProteinModelPortal:P32027 SMR:P32027 STRING:P32027 PRIDE:P32027
            EnsemblMetazoa:FBtr0078395 GeneID:40374 KEGG:dme:Dmel_CG5069
            CTD:40374 FlyBase:FBgn0014143 eggNOG:COG5025
            GeneTree:ENSGT00700000104475 InParanoid:P32027 KO:K09396
            OMA:WYTPETP PhylomeDB:P32027 GenomeRNAi:40374 NextBio:818451
            Bgee:P32027 GermOnline:CG5069 GO:GO:0007380 GO:GO:0009888
            Uniprot:P32027
        Length = 508

 Score = 182 (69.1 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 37/85 (43%), Positives = 51/85 (60%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P   K   KPP++Y  LI  A++     ++T++GIYQ+I ERFPYY  N   W+NS+RHN
Sbjct:    62 PHQNKEIVKPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHN 121

Query:   101 LSINPHFRKGVKASQ--GAGHLWNL 123
             LS+N  F K  +  +  G G  W L
Sbjct:   122 LSLNECFVKVARDDKKPGKGSYWTL 146


>UNIPROTKB|G3MX01 [details] [associations]
            symbol:FOXN3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0045892 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00700000104051 EMBL:DAAA02030019 EMBL:DAAA02030020
            EMBL:DAAA02030021 EMBL:DAAA02030022 EMBL:DAAA02030023
            EMBL:DAAA02030024 EMBL:DAAA02030025 EMBL:DAAA02030026
            Ensembl:ENSBTAT00000064571 Uniprot:G3MX01
        Length = 181

 Score = 160 (61.4 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 35/92 (38%), Positives = 50/92 (54%)

Query:    20 MEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKEK--HQLTVSGIYQ 77
             + P Q     P PS +   D    +    + KPP++++ LI  A+++    +L V  IY 
Sbjct:    84 VSPVQDPDDDPPPSPAH-SDVPYDARQNPNCKPPYSFSCLIFMAIEDSPTKRLPVKDIYN 142

Query:    78 WISERFPYYNQNDDRWKNSVRHNLSINPHFRK 109
             WI E FPY+      WKNSVRHNLS+N  F+K
Sbjct:   143 WILEHFPYFANAPTGWKNSVRHNLSLNKCFKK 174


>FB|FBgn0036134 [details] [associations]
            symbol:fd68A "forkhead domain 68A" species:7227 "Drosophila
            melanogaster" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISS;IDA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0009888 "tissue
            development" evidence=IBA] [GO:0009790 "embryo development"
            evidence=IBA] [GO:0000287 "magnesium ion binding" evidence=IBA]
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] InterPro:IPR000253 InterPro:IPR001766
            InterPro:IPR008984 InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006
            PROSITE:PS50039 SMART:SM00240 SMART:SM00339 EMBL:AE014296
            GO:GO:0000287 GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991
            Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 GO:GO:0009888
            GeneTree:ENSGT00700000104094 FlyBase:FBgn0036134 UniGene:Dm.7143
            GeneID:39252 KEGG:dme:Dmel_CG11799 CTD:39252 GenomeRNAi:39252
            NextBio:812710 EMBL:BT023507 RefSeq:NP_648440.2 RefSeq:NP_729673.2
            RefSeq:NP_729674.2 RefSeq:NP_729675.2 SMR:Q8IQE9 STRING:Q8IQE9
            EnsemblMetazoa:FBtr0300783 EnsemblMetazoa:FBtr0300784
            EnsemblMetazoa:FBtr0300785 EnsemblMetazoa:FBtr0300786
            UCSC:CG11799-RE InParanoid:Q8IQE9 OMA:RFPSTEI Uniprot:Q8IQE9
        Length = 746

 Score = 184 (69.8 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 55/172 (31%), Positives = 87/172 (50%)

Query:    43 PSHAK-THR-KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDR-WKNSV 97
             PS A   H  KPP++Y +LI QA+      QLT+SGIY +I + +PYY +  ++ W+NS+
Sbjct:   443 PSTASYNHNEKPPYSYAQLIVQAISAAPDKQLTLSGIYSFIVKHYPYYRKETNKGWQNSI 502

Query:    98 RHNLSINPHFRKGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWG 155
             RHNLS+N +F K  ++    G G  W + D +        ++KK R ++  +  +P  +G
Sbjct:   503 RHNLSLNRYFIKVARSQDEPGKGSFWRI-DPDSGAKLIDHSYKKRRQRSS-QGFRPP-YG 559

Query:   156 DDYSGQNSTETPAPSMETMPQP----QPQPLNT-MSLAHDPLQPFEVYSQES 202
                S   S      S E+ P      Q  P +  MSL      P  +Y+ ++
Sbjct:   560 MPRSAPVSPSHMDNSRESSPLQDIVLQSAPGSPGMSLEQRAADPEIIYNSQN 611


>ZFIN|ZDB-GENE-031126-2 [details] [associations]
            symbol:foxi2 "forkhead box I2" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0009957 "epidermal cell fate specification"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0043049 "otic placode formation" evidence=IBA]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0006357 "regulation of transcription
            from RNA polymerase II promoter" evidence=IBA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-031126-2 GO:GO:0043565 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0003690 GO:GO:0008134 GO:GO:0007389 GO:GO:0051090
            GO:GO:0043049 GO:GO:0009957 HSSP:Q99958 HOVERGEN:HBG067944
            EMBL:AY331582 IPI:IPI00493834 UniGene:Dr.152085
            ProteinModelPortal:Q7T1C2 SMR:Q7T1C2 InParanoid:Q7T1C2
            Uniprot:Q7T1C2
        Length = 383

 Score = 179 (68.1 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 41/125 (32%), Positives = 69/125 (55%)

Query:    51 KPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A++  H+  LT+S IYQ++++ FP+Y ++   W+NS+RHNLS+N  F+
Sbjct:   129 RPPYSYSALIAMAIQNAHEKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 188

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLK---TYLESLQPSEWGDDYSGQN 162
             K  +     G G+ W L  + E + D      K+ R     T + S    E     +G  
Sbjct:   189 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRSDSSTGVSSNTKPEDDRQLAGIK 248

Query:   163 STETP 167
              T++P
Sbjct:   249 PTDSP 253


>MGI|MGI:1347464 [details] [associations]
            symbol:Foxg1 "forkhead box G1" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0002052 "positive
            regulation of neuroblast proliferation" evidence=IMP] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0003690 "double-stranded DNA
            binding" evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0007275 "multicellular organismal
            development" evidence=IEA] [GO:0007346 "regulation of mitotic cell
            cycle" evidence=IMP] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IBA] [GO:0009888 "tissue development" evidence=IBA]
            [GO:0009953 "dorsal/ventral pattern formation" evidence=IMP]
            [GO:0016199 "axon midline choice point recognition" evidence=IMP]
            [GO:0021954 "central nervous system neuron development"
            evidence=IMP] [GO:0022008 "neurogenesis" evidence=IDA] [GO:0030900
            "forebrain development" evidence=IMP] [GO:0030902 "hindbrain
            development" evidence=IBA] [GO:0035058 "nonmotile primary cilium
            assembly" evidence=IBA] [GO:0042472 "inner ear morphogenesis"
            evidence=IGI;IMP] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0043584 "nose development" evidence=IBA]
            [GO:0045665 "negative regulation of neuron differentiation"
            evidence=IMP] [GO:0045787 "positive regulation of cell cycle"
            evidence=IMP] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0048667 "cell morphogenesis involved in neuron differentiation"
            evidence=IMP] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:2000177
            "regulation of neural precursor cell proliferation" evidence=IGI]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            MGI:MGI:1347464 GO:GO:0009792 GO:GO:0007346 GO:GO:0043565
            GO:GO:0045944 GO:GO:0016199 GO:GO:0030900 GO:GO:0045665
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000122 GO:GO:0008301 GO:GO:0042472 GO:GO:0003690
            GO:GO:0030902 GO:GO:0009953 GO:GO:0008134 GO:GO:0021954
            GO:GO:0045787 GO:GO:0002052 GO:GO:0051090 GO:GO:0035058
            GO:GO:0043584 eggNOG:COG5025 GO:GO:0009888 CTD:2290
            HOGENOM:HOG000112629 HOVERGEN:HBG051645 KO:K09385 OrthoDB:EOG4M0F2T
            OMA:YSTMLTQ EMBL:U36760 EMBL:BC046958 IPI:IPI00122768
            RefSeq:NP_001153584.1 RefSeq:NP_032267.1 UniGene:Mm.4704
            ProteinModelPortal:Q60987 SMR:Q60987 STRING:Q60987
            PhosphoSite:Q60987 PRIDE:Q60987 Ensembl:ENSMUST00000021333
            Ensembl:ENSMUST00000179669 GeneID:15228 KEGG:mmu:15228
            GeneTree:ENSGT00700000104051 InParanoid:Q60987 ChiTaRS:FOXG1
            NextBio:287819 Bgee:Q60987 CleanEx:MM_FOXG1 Genevestigator:Q60987
            GermOnline:ENSMUSG00000020950 Uniprot:Q60987
        Length = 481

 Score = 178 (67.7 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
 Identities = 34/79 (43%), Positives = 52/79 (65%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             + KPPF+Y  LI  A+++  + +LT++GIY++I + FPYY +N   W+NS+RHNLS+N  
Sbjct:   171 YEKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKC 230

Query:   107 FRKGVKA--SQGAGHLWNL 123
             F K  +     G G+ W L
Sbjct:   231 FVKVPRHYDDPGKGNYWML 249

 Score = 42 (19.8 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query:    13 PPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPS 44
             PP    P  P Q    +P P+    + R  P+
Sbjct:    59 PPAPQPPPPPPQQQQQQPPPAPQPPQARGAPA 90


>MGI|MGI:3028075 [details] [associations]
            symbol:Foxi2 "forkhead box I2" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0007389 "pattern specification
            process" evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009957 "epidermal cell fate specification" evidence=IBA]
            [GO:0043049 "otic placode formation" evidence=IBA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 MGI:MGI:3028075 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000122 GO:GO:0008301 GO:GO:0003690 GO:GO:0008134
            GO:GO:0007389 GO:GO:0051090 GO:GO:0043049 eggNOG:COG5025
            GO:GO:0009957 HOVERGEN:HBG067944 KO:K09401 OrthoDB:EOG457573
            CTD:399823 EMBL:DQ078268 EMBL:AK045276 EMBL:BC096623
            IPI:IPI00222159 RefSeq:NP_899016.1 UniGene:Mm.132547
            ProteinModelPortal:Q3I5G5 SMR:Q3I5G5 STRING:Q3I5G5
            PhosphoSite:Q3I5G5 PRIDE:Q3I5G5 GeneID:270004 KEGG:mmu:270004
            InParanoid:Q3I5G5 NextBio:393154 Bgee:Q3I5G5 CleanEx:MM_FOXI2
            Genevestigator:Q3I5G5 Uniprot:Q3I5G5
        Length = 311

 Score = 176 (67.0 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 43/136 (31%), Positives = 69/136 (50%)

Query:    51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A++     +LT+S IYQ+++  FP+Y ++   W+NS+RHNLS+N  F+
Sbjct:    99 RPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFK 158

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTE 165
             K  +     G G+ W L  + E + D      K+ R     E+  P       S + +  
Sbjct:   159 KVPRDENDPGKGNYWTLDPNCEKMFDNGNFRRKRRRRGETSEAAVPGA----SSPEGTAL 214

Query:   166 TPAPSMETMPQPQPQP 181
              P  S    PQ  P P
Sbjct:   215 EPRGSTPQDPQTSPSP 230


>UNIPROTKB|Q28HT3 [details] [associations]
            symbol:foxi2 "Forkhead box protein I2" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 eggNOG:COG5025 HOVERGEN:HBG067944
            KO:K09401 CTD:399823 EMBL:CR760754 RefSeq:NP_001016544.1
            UniGene:Str.6457 ProteinModelPortal:Q28HT3 SMR:Q28HT3 GeneID:549298
            KEGG:xtr:549298 Xenbase:XB-GENE-982122 Uniprot:Q28HT3
        Length = 368

 Score = 178 (67.7 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 39/111 (35%), Positives = 67/111 (60%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A++   + +LT+S IY +++E FP+Y ++   W+NS+RHNLS+N  F+
Sbjct:   124 RPPYSYSSLIAMAIQNNPEKKLTLSQIYSYVAENFPFYKKSKAGWQNSIRHNLSLNDCFK 183

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGD 156
             K  +     G G+ W L  + E + D    N+++ R K   ES++    GD
Sbjct:   184 KVARDDNDPGKGNYWTLDPNCEKMFD--NGNFRRKR-KRKSESVEAGFDGD 231


>UNIPROTKB|O57588 [details] [associations]
            symbol:whn "Putative transcription factor (Forkhead
            /winged-helix class)" species:31033 "Takifugu rubripes" [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008016 "regulation of
            heart contraction" evidence=IBA] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0048513 "organ
            development" evidence=IBA] [GO:0048675 "axon extension"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0043565
            GO:GO:0008016 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0009790 GO:GO:0003690
            GO:GO:0008134 GO:GO:0007389 GO:GO:0051090 GO:GO:0048513
            GO:GO:0048675 eggNOG:COG5025 GO:GO:0009888 HSSP:Q63244
            HOGENOM:HOG000232153 OrthoDB:EOG4D7Z5G EMBL:X97021
            ProteinModelPortal:O57588 InParanoid:O57588 Uniprot:O57588
        Length = 358

 Score = 176 (67.0 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
 Identities = 45/115 (39%), Positives = 61/115 (53%)

Query:    47 KTHRKPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSIN 104
             KT  KP ++Y+ LI  ALK      L VS IY ++ E FPY+    D WKNSVRHNLS+N
Sbjct:    33 KTFPKPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKTAPDGWKNSVRHNLSLN 92

Query:   105 PHFRK---GVKASQGAGHLW--NLSDMEPVEDASKSNWKKNRLKTYLESL-QPSE 153
               F K      +S   G LW  N + ++ +E+  +  WK+  L     S+  P E
Sbjct:    93 KCFEKVENKTSSSSRKGCLWALNPAKIDKMEEEMQK-WKRKDLPAIRRSMANPDE 146

 Score = 38 (18.4 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query:   164 TETPA-PSMETMPQP---QPQPLNTMSLAHDPLQPFEVYSQ 200
             T  P  P+   +P P   QP P+ T+SL   P  P   + Q
Sbjct:   168 TRLPVCPTGLPLPLPAQVQPPPIVTLSL---PCLPMHQHHQ 205


>UNIPROTKB|Q4H3I9 [details] [associations]
            symbol:Ci-FoxG "Transcription factor protein" species:7719
            "Ciona intestinalis" [GO:0002052 "positive regulation of neuroblast
            proliferation" evidence=IBA] [GO:0003690 "double-stranded DNA
            binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IBA] [GO:0009888 "tissue development" evidence=IBA]
            [GO:0009953 "dorsal/ventral pattern formation" evidence=IBA]
            [GO:0016199 "axon midline choice point recognition" evidence=IBA]
            [GO:0035058 "nonmotile primary cilium assembly" evidence=IBA]
            [GO:0045665 "negative regulation of neuron differentiation"
            evidence=IBA] [GO:0045787 "positive regulation of cell cycle"
            evidence=IBA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0009792 GO:GO:0007346
            GO:GO:0043565 GO:GO:0045944 GO:GO:0016199 GO:GO:0045665
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0009953 GO:GO:0008134
            GO:GO:0045787 GO:GO:0002052 GO:GO:0051090 GO:GO:0035058
            eggNOG:COG5025 GO:GO:0009888 EMBL:AB210433 UniGene:Cin.33151
            InParanoid:Q4H3I9 Uniprot:Q4H3I9
        Length = 467

 Score = 180 (68.4 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 46/130 (35%), Positives = 69/130 (53%)

Query:    18 SPMEPCQTSSHK-PEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKE--KHQLTVSG 74
             SP +  QT++    E    + +    P   K  +KPP++Y  LI  A+K+  + +LT+S 
Sbjct:    65 SPQK--QTNNENLEEKCPKDQKPSTSPPSNKYGKKPPYSYNALIMMAIKKSPRKRLTLSQ 122

Query:    75 IYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNL-SDMEPVED 131
             IYQ+I+  FPYY +N   W+NS+RHNLS N  F K  +     G G+ W L S  + V  
Sbjct:   123 IYQYITTTFPYYKENKQAWQNSIRHNLSSNKCFVKVPRHYDDPGKGNYWMLDSSSDDVYI 182

Query:   132 ASKSNWKKNR 141
              S +   + R
Sbjct:   183 GSSTGKLRRR 192


>UNIPROTKB|Q4H3I0 [details] [associations]
            symbol:Ci-FoxM "Transcription factor protein" species:7719
            "Ciona intestinalis" [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0019904 "protein
            domain specific binding" evidence=IBA] [GO:0046578 "regulation of
            Ras protein signal transduction" evidence=IBA] [GO:0048513 "organ
            development" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0071156 "regulation of cell cycle arrest"
            evidence=IBA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0019904 GO:GO:0008284 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0071156 GO:GO:0007389 GO:GO:0051090 GO:GO:0048513
            GO:GO:0046578 eggNOG:COG5025 GO:GO:0009888 KO:K09406 EMBL:AB210442
            RefSeq:NP_001071993.1 UniGene:Cin.30421 ProteinModelPortal:Q4H3I0
            GeneID:778968 KEGG:cin:778968 CTD:576632 InParanoid:Q4H3I0
            Uniprot:Q4H3I0
        Length = 916

 Score = 184 (69.8 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 63/260 (24%), Positives = 119/260 (45%)

Query:    39 DRCCPSHAKTHRKPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNS 96
             DR      +   +PP++Y  LI+ A+      ++T+  IYQWI E+FPY+      WKNS
Sbjct:   322 DRKVYERTEKRGRPPYSYMALIQFAINSSSTGKMTLRQIYQWIEEKFPYFKSAKPGWKNS 381

Query:    97 VRHNLSINPHFRKGVKASQGAGHLWNL-SDMEPVEDASKSNWKKNRLKTYLESLQPSEWG 155
             +RHNLS++  F + V     A + W L SD+  +   +  + +     T+ ++  P +  
Sbjct:   382 IRHNLSLHDIFVRQVTTGSKASY-WTLRSDLN-IRPLTLDSVRGTSHHTFQDTSNPQD-- 437

Query:   156 DDYSGQNSTETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLY 215
               +S Q   +   P +  +PQ +P  L  + L ++     ++ +Q + T   +     +Y
Sbjct:   438 PSWSLQTVMQGQKPILPRLPQ-RPYILLPVPLINNGTNDKDM-TQSTTTVDVQTPS--VY 493

Query:   216 IQSNDNVLYTPHEDHKLYHND--NVLYTPGEDHKLYQYEPSKNLIMAAYDGGQEKVEIF- 272
               +    L+T  ++ +L   D  + L   G    L  + PS  L+ +     Q+K     
Sbjct:   494 NSTPLPTLHTDKDNRRLSSQDGSSFLTDSGFISDLSMFTPSNCLLNSVEKRLQKKSATSD 553

Query:   273 ASDTISKNLIMAAYDGGQEK 292
             +S  +S+  +++   G  +K
Sbjct:   554 SSPLLSQTQVLSGKKGTTKK 573


>ZFIN|ZDB-GENE-061116-1 [details] [associations]
            symbol:foxe1 "forkhead box E1 (thyroid transcription
            factor 2)" species:7955 "Danio rerio" [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0048703 "embryonic
            viscerocranium morphogenesis" evidence=IMP] [GO:0003419 "growth
            plate cartilage chondrocyte proliferation" evidence=IMP]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-061116-1 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0003419
            GO:GO:0048703 GeneTree:ENSGT00700000104135 CTD:2304 KO:K09398
            EMBL:BX005000 IPI:IPI00902176 RefSeq:XP_696065.1 UniGene:Dr.101314
            Ensembl:ENSDART00000109297 GeneID:567676 KEGG:dre:567676
            OMA:QLPSAYY NextBio:20888793 Uniprot:E7EZ33
        Length = 354

 Score = 177 (67.4 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 40/103 (38%), Positives = 59/103 (57%)

Query:    51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A+      +LT+ GIY++I+ERFP+Y  N  +W+NS+RHNL++N  F 
Sbjct:    40 KPPYSYIALISMAIANSPDRKLTLGGIYKFITERFPFYRDNSKKWQNSIRHNLTLNDCFI 99

Query:   109 KGVK--ASQGAGHLWNLSDMEP-VEDASKSNWKKNRLKTYLES 148
             K  +     G G+ W L   +P  ED  +S     R K +  S
Sbjct:   100 KIPREPGRPGKGNYWAL---DPNAEDMFESGSFLRRRKRFKRS 139


>UNIPROTKB|F1PC35 [details] [associations]
            symbol:FOXP4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR015880
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 SMART:SM00355 GO:GO:0043565
            GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005622 GeneTree:ENSGT00690000101938 OMA:PQPKEAL
            EMBL:AAEX03008323 Ensembl:ENSCAFT00000002501 Uniprot:F1PC35
        Length = 669

 Score = 182 (69.1 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 59/212 (27%), Positives = 90/212 (42%)

Query:    11 LKPPGQFSPMEPCQTSSHKPEPSQSEVEDR-CCPSH---AKTHR-------KPPFTYTEL 59
             L+PPG  S       S H   P++    D+ C P     A+ H        +PPFTY  L
Sbjct:   411 LRPPGLSS------ASLHSGGPARRRSSDKFCSPISSELAQNHEFYKNADVRPPFTYASL 464

Query:    60 IEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA 117
             I QA+ E    QLT++ IY W +  F Y+ +N   WKN+VRHNLS++  F   V+     
Sbjct:   465 IRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCF---VRVENVK 521

Query:   118 GHLWNLSDME-PVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQ 176
             G +W + + E       K       +K  +  L        Y    + E+  P + +   
Sbjct:   522 GAVWTVDEREYQKRRPPKMTGSPTLVKNMISGLSYGALNASYQAALA-ESSFPLLNSPGM 580

Query:   177 PQPQPLNTM-SLAHDPL-QPFEVYSQESKTFP 206
               P   +++  L+HD +  P E       + P
Sbjct:   581 LNPGSASSLLPLSHDEVGAPVEPLPSNGSSSP 612


>UNIPROTKB|E1BVS9 [details] [associations]
            symbol:FOXJ1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0000976 "transcription regulatory region sequence-specific DNA
            binding" evidence=IEA] [GO:0002508 "central tolerance induction"
            evidence=IEA] [GO:0002635 "negative regulation of germinal center
            formation" evidence=IEA] [GO:0002897 "positive regulation of
            central B cell tolerance induction" evidence=IEA] [GO:0002924
            "negative regulation of humoral immune response mediated by
            circulating immunoglobulin" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006959 "humoral immune response" evidence=IEA]
            [GO:0007420 "brain development" evidence=IEA] [GO:0030036 "actin
            cytoskeleton organization" evidence=IEA] [GO:0032088 "negative
            regulation of NF-kappaB transcription factor activity"
            evidence=IEA] [GO:0032862 "activation of Rho GTPase activity"
            evidence=IEA] [GO:0033085 "negative regulation of T cell
            differentiation in thymus" evidence=IEA] [GO:0035089 "establishment
            of apical/basal cell polarity" evidence=IEA] [GO:0035502
            "metanephric part of ureteric bud development" evidence=IEA]
            [GO:0042130 "negative regulation of T cell proliferation"
            evidence=IEA] [GO:0042384 "cilium assembly" evidence=IEA]
            [GO:0045409 "negative regulation of interleukin-6 biosynthetic
            process" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0050869 "negative regulation of B cell activation"
            evidence=IEA] [GO:0050900 "leukocyte migration" evidence=IEA]
            [GO:0060972 "left/right pattern formation" evidence=IEA]
            [GO:0072016 "glomerular parietal epithelial cell development"
            evidence=IEA] [GO:1901248 "positive regulation of lung ciliated
            cell differentiation" evidence=IEA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0042130 GO:GO:0030036 GO:GO:0050900 GO:GO:0043565
            GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0000122 GO:GO:0032088 GO:GO:0006959
            GO:GO:0033085 GO:GO:0032862 GO:GO:0030856 GO:GO:0002924 OMA:PVHIHPA
            GO:GO:0035089 GO:GO:0050869 GO:GO:0002635 GO:GO:0045409
            GO:GO:0002897 GeneTree:ENSGT00700000104094 EMBL:AADN02029953
            EMBL:AADN02029954 EMBL:AADN02029955 IPI:IPI00684173
            Ensembl:ENSGALT00000034839 Uniprot:E1BVS9
        Length = 439

 Score = 179 (68.1 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 42/130 (32%), Positives = 66/130 (50%)

Query:    18 SPMEPCQTS-SHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALK--EKHQLTVSG 74
             +P +P  +S S    P+               H KPP++Y  LI  A++  +K ++T+S 
Sbjct:    93 TPGKPTSSSTSRTAHPALQAQPPEDIDYKTNPHVKPPYSYATLICMAMEASKKTKITLSA 152

Query:    75 IYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRK--GVKASQGAGHLWNLSDMEPVEDA 132
             IY+WI++ F Y+   D  W+NS+RHNLS+N  F K    K   G G  W + D +  +  
Sbjct:   153 IYKWITDNFCYFRHADPTWQNSIRHNLSLNKCFIKVPREKDEPGKGGFWKI-DPQYADRL 211

Query:   133 SKSNWKKNRL 142
                 +KK R+
Sbjct:   212 MNGAFKKRRM 221


>UNIPROTKB|Q4H3I4 [details] [associations]
            symbol:Ci-FoxI-c "Transcription factor protein"
            species:7719 "Ciona intestinalis" [GO:0003690 "double-stranded DNA
            binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009653 "anatomical structure morphogenesis" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0009888 "tissue
            development" evidence=IBA] [GO:0048513 "organ development"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0009790 GO:GO:0003690
            GO:GO:0008134 GO:GO:0009653 GO:GO:0007389 GO:GO:0051090
            GO:GO:0048513 eggNOG:COG5025 GO:GO:0009888 KO:K09401 EMBL:AB210438
            RefSeq:NP_001071713.1 UniGene:Cin.33229 ProteinModelPortal:Q4H3I4
            SMR:Q4H3I4 GeneID:778616 KEGG:cin:778616 CTD:778616
            HOGENOM:HOG000169943 HOVERGEN:HBG086629 InParanoid:Q4H3I4
            Uniprot:Q4H3I4
        Length = 581

 Score = 181 (68.8 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 49/159 (30%), Positives = 88/159 (55%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A++   + +LT+S IYQ+++E FP+Y ++   W+NS+RHNLS+N  F+
Sbjct:   258 RPPYSYSALIAMAIQNSPEKKLTLSQIYQYVAENFPFYKKSRAGWQNSIRHNLSLNDCFK 317

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTE 165
             K  +     G G+ W+L  + E + D    N+++ R +    +L          G+++ E
Sbjct:   318 KVARDEDDPGKGNYWSLDPNCEKMFD--NGNFRRKRKRRDQNNLL---------GKDTIE 366

Query:   166 TPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKT 204
              PA     +PQ  P P++ ++   +  Q   + S ES T
Sbjct:   367 RPADF--NLPQIPP-PISLLNAVQNNQQDGRMVS-ESPT 401


>ZFIN|ZDB-GENE-040426-2437 [details] [associations]
            symbol:foxg1b "forkhead box G1b" species:7955
            "Danio rerio" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0021954 "central nervous system neuron development"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0030902 "hindbrain development" evidence=IBA] [GO:0035058
            "nonmotile primary cilium assembly" evidence=IBA] [GO:0009953
            "dorsal/ventral pattern formation" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0043584 "nose
            development" evidence=IBA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0042472 "inner ear morphogenesis" evidence=IBA] [GO:0045665
            "negative regulation of neuron differentiation" evidence=IBA]
            [GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
            [GO:0002052 "positive regulation of neuroblast proliferation"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0016199 "axon midline choice point recognition"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0045787 "positive regulation of cell cycle" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0009888 "tissue development" evidence=IBA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-040426-2437 GO:GO:0009792 GO:GO:0007346 GO:GO:0043565
            GO:GO:0045944 GO:GO:0016199 GO:GO:0045665 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0042472 GO:GO:0003690 GO:GO:0030902 GO:GO:0009953
            GO:GO:0008134 GO:GO:0021954 GO:GO:0045787 GO:GO:0002052
            GO:GO:0051090 GO:GO:0035058 GO:GO:0043584 eggNOG:COG5025
            GO:GO:0009888 HSSP:Q01167 HOGENOM:HOG000112629 HOVERGEN:HBG051645
            GeneTree:ENSGT00700000104051 EMBL:CABZ01090073 EMBL:BC067725
            IPI:IPI00858840 RefSeq:NP_998079.2 UniGene:Dr.82660 SMR:Q6NW50
            Ensembl:ENSDART00000013642 GeneID:405850 KEGG:dre:405850 CTD:405850
            InParanoid:Q6NW50 OMA:LHHSHYN OrthoDB:EOG4NP74C NextBio:20817812
            Uniprot:Q6NW50
        Length = 333

 Score = 176 (67.0 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 41/116 (35%), Positives = 65/116 (56%)

Query:    12 KPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKE--KHQ 69
             KPP + + M+  Q  + +PE    +          K   KPPF+Y  LI  A+++  + +
Sbjct:    40 KPP-EDAEMDNAQRDAEEPELQTKK---------GKKFDKPPFSYNALIMMAIRQSPEKR 89

Query:    70 LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNL 123
             LT++GIY++I + FPYY ++   W+NS+RHNLS+N  F K  +     G G+ W L
Sbjct:    90 LTLNGIYEFIMKNFPYYREHKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWML 145


>ZFIN|ZDB-GENE-030131-5310 [details] [associations]
            symbol:si:ch211-262e15.1 "si:ch211-262e15.1"
            species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR000253 InterPro:IPR001766
            InterPro:IPR008984 InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006
            PROSITE:PS50039 SMART:SM00240 SMART:SM00339
            ZFIN:ZDB-GENE-030131-5310 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 Gene3D:2.60.200.20
            SUPFAM:SSF49879 GeneTree:ENSGT00700000104094 KO:K09404
            EMBL:BX539347 EMBL:FP326646 IPI:IPI00636588 RefSeq:XP_001922856.1
            Ensembl:ENSDART00000018159 GeneID:798356 KEGG:dre:798356
            NextBio:20933376 Bgee:E7FFM9 Uniprot:E7FFM9
        Length = 597

 Score = 181 (68.8 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 42/108 (38%), Positives = 63/108 (58%)

Query:    33 SQSEVEDRCCPSHA-KTHRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQN 89
             SQSE +       + K   KPP++Y +LI QA+      QLT++GIY  I++ +PYY   
Sbjct:   192 SQSENDKETSEGDSPKDDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTA 251

Query:    90 DDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL---SDMEPVEDA 132
             D  W+NS+RHNLS+N +F K  ++ +  G G  W +   S+ + VE A
Sbjct:   252 DKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPSSEGKLVEQA 299


>UNIPROTKB|F1NP93 [details] [associations]
            symbol:FOXG1 "Forkhead box protein G1" species:9031 "Gallus
            gallus" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0045892 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            IPI:IPI00581171 OMA:YSTMLTQ GeneTree:ENSGT00700000104051
            EMBL:AADN02003339 Ensembl:ENSGALT00000016016 Uniprot:F1NP93
        Length = 406

 Score = 178 (67.7 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 34/79 (43%), Positives = 52/79 (65%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             + KPPF+Y  LI  A+++  + +LT++GIY++I + FPYY +N   W+NS+RHNLS+N  
Sbjct:    96 YEKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKC 155

Query:   107 FRKGVKA--SQGAGHLWNL 123
             F K  +     G G+ W L
Sbjct:   156 FVKVPRHYDDPGKGNYWML 174


>UNIPROTKB|F1NV54 [details] [associations]
            symbol:FOXN2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GeneTree:ENSGT00700000104051
            EMBL:AADN02036249 IPI:IPI00599839 Ensembl:ENSGALT00000014538
            ArrayExpress:F1NV54 Uniprot:F1NV54
        Length = 175

 Score = 158 (60.7 bits), Expect = 4.6e-11, P = 4.6e-11
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P    +  KPP++++ LI  A++      L V  IY WI ERFPY+      WKNSVRHN
Sbjct:   104 PEKKSSTSKPPYSFSLLIYMAIEHSPNKSLPVKEIYSWILERFPYFATAPTGWKNSVRHN 163

Query:   101 LSINPHFRK 109
             LS+N  FRK
Sbjct:   164 LSLNKCFRK 172


>RGD|621727 [details] [associations]
            symbol:Foxe3 "forkhead box E3" species:10116 "Rattus norvegicus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0001654 "eye development"
            evidence=ISO;IMP] [GO:0002089 "lens morphogenesis in camera-type
            eye" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA;ISO;NAS] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005667
            "transcription factor complex" evidence=IEA;ISO;IBA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IEA;ISO] [GO:0006590 "thyroid hormone generation"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0007422 "peripheral nervous system development"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0016477 "cell migration" evidence=IBA] [GO:0030878 "thyroid
            gland development" evidence=IBA] [GO:0031069 "hair follicle
            morphogenesis" evidence=IBA] [GO:0043010 "camera-type eye
            development" evidence=IEA;ISO;IMP] [GO:0043565 "sequence-specific
            DNA binding" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0048468 "cell development" evidence=IEA;ISO;IMP] [GO:0048484
            "enteric nervous system development" evidence=IBA] [GO:0048485
            "sympathetic nervous system development" evidence=IRD] [GO:0048562
            "embryonic organ morphogenesis" evidence=IBA] [GO:0048846 "axon
            extension involved in axon guidance" evidence=IRD] [GO:0048937
            "lateral line nerve glial cell development" evidence=IRD]
            [GO:0050679 "positive regulation of epithelial cell proliferation"
            evidence=IEA;ISO;IMP] [GO:0051090 "regulation of sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0060022 "hard palate development" evidence=IBA] [GO:0060023
            "soft palate development" evidence=IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 RGD:621727
            GO:GO:0016477 GO:GO:0043565 GO:GO:0045944 GO:GO:0007422
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0008134 GO:GO:0007389
            GO:GO:0048468 GO:GO:0048484 GO:GO:0051090 GO:GO:0031069
            GO:GO:0050679 GO:GO:0006590 GO:GO:0002089 GO:GO:0060023
            eggNOG:COG5025 GO:GO:0060022 GO:GO:0030878 HOGENOM:HOG000231286
            GO:GO:0048562 OrthoDB:EOG4001JR EMBL:L13207 IPI:IPI00231011
            PIR:I60921 UniGene:Rn.92407 ProteinModelPortal:Q63250 SMR:Q63250
            STRING:Q63250 PhosphoSite:Q63250 UCSC:RGD:621727 InParanoid:Q63250
            Genevestigator:Q63250 GermOnline:ENSRNOG00000007770 Uniprot:Q63250
        Length = 101

 Score = 158 (60.7 bits), Expect = 4.6e-11, P = 4.6e-11
 Identities = 31/77 (40%), Positives = 49/77 (63%)

Query:    51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  AL      +LT++ IY++I+ERF +Y  +  +W+NS+RHNL++N  F 
Sbjct:     3 KPPYSYIALIAMALAHAPGRRLTLAAIYRFITERFAFYRDSPRKWQNSIRHNLTLNDCFV 62

Query:   109 KGVK--ASQGAGHLWNL 123
             K  +   + G G+ W L
Sbjct:    63 KVPREPGNPGKGNYWTL 79


>UNIPROTKB|Q63250 [details] [associations]
            symbol:Foxe3 "Forkhead box protein E3" species:10116
            "Rattus norvegicus" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0050679 "positive regulation of epithelial cell
            proliferation" evidence=IEA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 RGD:621727 GO:GO:0016477
            GO:GO:0043565 GO:GO:0045944 GO:GO:0007422 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0003690 GO:GO:0008134 GO:GO:0007389 GO:GO:0048468
            GO:GO:0048484 GO:GO:0051090 GO:GO:0031069 GO:GO:0050679
            GO:GO:0006590 GO:GO:0002089 GO:GO:0060023 eggNOG:COG5025
            GO:GO:0060022 GO:GO:0030878 HOGENOM:HOG000231286 GO:GO:0048562
            OrthoDB:EOG4001JR EMBL:L13207 IPI:IPI00231011 PIR:I60921
            UniGene:Rn.92407 ProteinModelPortal:Q63250 SMR:Q63250 STRING:Q63250
            PhosphoSite:Q63250 UCSC:RGD:621727 InParanoid:Q63250
            Genevestigator:Q63250 GermOnline:ENSRNOG00000007770 Uniprot:Q63250
        Length = 101

 Score = 158 (60.7 bits), Expect = 4.6e-11, P = 4.6e-11
 Identities = 31/77 (40%), Positives = 49/77 (63%)

Query:    51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  AL      +LT++ IY++I+ERF +Y  +  +W+NS+RHNL++N  F 
Sbjct:     3 KPPYSYIALIAMALAHAPGRRLTLAAIYRFITERFAFYRDSPRKWQNSIRHNLTLNDCFV 62

Query:   109 KGVK--ASQGAGHLWNL 123
             K  +   + G G+ W L
Sbjct:    63 KVPREPGNPGKGNYWTL 79


>MGI|MGI:1096329 [details] [associations]
            symbol:Foxi1 "forkhead box I1" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISO] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=IC] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0007389 "pattern specification
            process" evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009957 "epidermal cell fate specification" evidence=IBA]
            [GO:0042472 "inner ear morphogenesis" evidence=IMP] [GO:0043049
            "otic placode formation" evidence=IBA] [GO:0043565
            "sequence-specific DNA binding" evidence=IDA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IDA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO;IDA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 MGI:MGI:1096329 GO:GO:0043565
            GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0000122 GO:GO:0008301 GO:GO:0044212
            GO:GO:0003690 GO:GO:0008134 GO:GO:0007389 GO:GO:0051090
            GO:GO:0043049 eggNOG:COG5025 EMBL:AL671971 GO:GO:0009957
            GeneTree:ENSGT00690000101636 CTD:2299 HOGENOM:HOG000236333
            HOVERGEN:HBG067944 KO:K09401 OMA:QAYGVQR OrthoDB:EOG4XKV7D
            EMBL:AK019994 EMBL:BC007475 IPI:IPI00187526 RefSeq:NP_076396.3
            UniGene:Mm.32926 ProteinModelPortal:Q922I5 SMR:Q922I5 STRING:Q922I5
            PhosphoSite:Q922I5 PRIDE:Q922I5 Ensembl:ENSMUST00000060271
            GeneID:14233 KEGG:mmu:14233 UCSC:uc007ikw.1 InParanoid:Q922I5
            NextBio:285511 Bgee:Q922I5 CleanEx:MM_FOXI1 Genevestigator:Q922I5
            GermOnline:ENSMUSG00000047861 Uniprot:Q922I5
        Length = 372

 Score = 177 (67.4 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 46/143 (32%), Positives = 79/143 (55%)

Query:    51 KPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A+      +LT+S IYQ++++ FP+YN++   W+NS+RHNLS+N  F+
Sbjct:   117 RPPYSYSALIAMAIHGAPDQRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 176

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTE 165
             K  +     G G+ W L  + E + D    N+++ R +        S+     S   S +
Sbjct:   177 KVPRDEDDPGKGNYWTLDPNCEKMFD--NGNFRRKRKRK-------SDSSSSTSSLASEK 227

Query:   166 TPAPSMETMPQP-QPQP-LNTMS 186
             T    + + P+P +PQ  L+T S
Sbjct:   228 TENGLLASSPKPTEPQEVLDTAS 250


>RGD|1307421 [details] [associations]
            symbol:Foxi1 "forkhead box I1" species:10116 "Rattus norvegicus"
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=ISO] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009957 "epidermal cell fate specification" evidence=IBA]
            [GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043049
            "otic placode formation" evidence=IBA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA;ISO] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA;ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 RGD:1307421 GO:GO:0043565
            GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0044212 GO:GO:0003690
            GO:GO:0008134 GO:GO:0007389 EMBL:CH473948 GO:GO:0051090
            GO:GO:0043049 GO:GO:0009957 GeneTree:ENSGT00690000101636 CTD:2299
            KO:K09401 OrthoDB:EOG4XKV7D OMA:FYNTINA IPI:IPI00368760
            RefSeq:NP_001099246.1 UniGene:Rn.32116 Ensembl:ENSRNOT00000009058
            GeneID:287185 KEGG:rno:287185 UCSC:RGD:1307421 NextBio:625680
            Uniprot:D4A7G2
        Length = 372

 Score = 177 (67.4 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 53/179 (29%), Positives = 88/179 (49%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHR--KPPFTYTELIEQ 62
             ++ P    P    SP  P Q    + +   SE+     PS  +  +  +PP++Y+ LI  
Sbjct:    70 AMTPPPYLPGTNASPFLP-QAYGMQRQLLPSELGWLPIPSQEELMKLVRPPYSYSALIAM 128

Query:    63 ALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAG 118
             A+      +LT+S IYQ++++ FP+YN++   W+NS+RHNLS+N  F+K  +     G G
Sbjct:   129 AIHGAPDQRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKG 188

Query:   119 HLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQ 176
             + W L  + E + D      K+ R K+   S   S   +    +  + +P P   T PQ
Sbjct:   189 NYWTLDPNCEKMFDNGNFRRKRKR-KSDASSSTGSLASEKTENRLLSSSPKP---TEPQ 243


>UNIPROTKB|Q5VV16 [details] [associations]
            symbol:FOXD4L5 "Forkhead box protein D4-like 5"
            species:9606 "Homo sapiens" [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0001755 "neural crest cell migration"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0007422 "peripheral nervous system development"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0030318
            "melanocyte differentiation" evidence=IBA] [GO:0030513 "positive
            regulation of BMP signaling pathway" evidence=IBA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IBA] [GO:0048484 "enteric nervous system
            development" evidence=IBA] [GO:0048485 "sympathetic nervous system
            development" evidence=IBA] [GO:0048846 "axon extension involved in
            axon guidance" evidence=IBA] [GO:0048937 "lateral line nerve glial
            cell development" evidence=IBA] [GO:0050935 "iridophore
            differentiation" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0051216 "cartilage development" evidence=IBA]
            [GO:0060678 "dichotomous subdivision of terminal units involved in
            ureteric bud branching" evidence=IBA] [GO:0090184 "positive
            regulation of kidney development" evidence=IBA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0001755 GO:GO:0043565 GO:GO:0045944 GO:GO:0007422
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0030513
            GO:GO:0051216 GO:GO:0008134 GO:GO:0007389 GO:GO:0048485
            GO:GO:0030318 GO:GO:0048484 GO:GO:0051090 GO:GO:0090184
            GO:GO:0048846 GO:GO:0048937 HSSP:Q63245 HOVERGEN:HBG051641
            GO:GO:0060678 GO:GO:0050935 HOGENOM:HOG000231285 HPA:HPA012836
            OrthoDB:EOG4JM7Q5 EMBL:AL512605 IPI:IPI00855883
            RefSeq:NP_001119806.1 UniGene:Hs.652377 UniGene:Hs.714683
            ProteinModelPortal:Q5VV16 SMR:Q5VV16 STRING:Q5VV16 DMDM:74747187
            PRIDE:Q5VV16 Ensembl:ENST00000377420 GeneID:653427 KEGG:hsa:653427
            UCSC:uc010moc.3 CTD:653427 GeneCards:GC09M070175 HGNC:HGNC:18522
            neXtProt:NX_Q5VV16 PharmGKB:PA162388804 InParanoid:Q5VV16
            GenomeRNAi:653427 NextBio:123231 ArrayExpress:Q5VV16
            CleanEx:HS_FOXD4L5 Genevestigator:Q5VV16 Uniprot:Q5VV16
        Length = 416

 Score = 178 (67.7 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 55/179 (30%), Positives = 86/179 (48%)

Query:    15 GQFSPMEPCQ--TSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQA-LKEKHQ-L 70
             G   P +P +  T    P  S +  ED      A+   KPP++Y  LI  A L+  H+ L
Sbjct:    76 GGGGPSDPSEFGTKFRAPPRSAAASED------ARQPAKPPYSYIALITMAILQNPHKRL 129

Query:    71 TVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNL--SDM 126
             T+SGI  +IS RFPYY +    W+NS+RHNLS+N  F K  +     G G+ W+L  +  
Sbjct:   130 TLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQ 189

Query:   127 EPVEDAS----KSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQP 181
             +  ++ S    +  +K+++L        P      ++  ++   P P +     PQP P
Sbjct:   190 DMFDNGSFLRRRKRFKRHQLTPGAHLPHPFPLPAAHAALHNPH-PGPLLGAPAPPQPVP 247


>UNIPROTKB|Q6VB85 [details] [associations]
            symbol:FOXD4L2 "Forkhead box protein D4-like 2"
            species:9606 "Homo sapiens" [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0001755 "neural crest cell migration"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0007422 "peripheral nervous system development"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0030318
            "melanocyte differentiation" evidence=IBA] [GO:0030513 "positive
            regulation of BMP signaling pathway" evidence=IBA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IBA] [GO:0048484 "enteric nervous system
            development" evidence=IBA] [GO:0048485 "sympathetic nervous system
            development" evidence=IBA] [GO:0048846 "axon extension involved in
            axon guidance" evidence=IBA] [GO:0048937 "lateral line nerve glial
            cell development" evidence=IBA] [GO:0050935 "iridophore
            differentiation" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0051216 "cartilage development" evidence=IBA]
            [GO:0060678 "dichotomous subdivision of terminal units involved in
            ureteric bud branching" evidence=IBA] [GO:0090184 "positive
            regulation of kidney development" evidence=IBA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0001755 GO:GO:0043565 GO:GO:0045944 GO:GO:0007422
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0030513
            GO:GO:0051216 GO:GO:0008134 GO:GO:0007389 GO:GO:0048485
            GO:GO:0030318 EMBL:AC129778 GO:GO:0048484 GO:GO:0051090
            GO:GO:0090184 GO:GO:0048846 eggNOG:COG5025 KO:K09397 GO:GO:0048937
            HSSP:Q63245 HOVERGEN:HBG051641 GO:GO:0060678 GO:GO:0050935
            HPA:HPA012836 EMBL:AY344641 IPI:IPI00847706 RefSeq:NP_001092749.1
            RefSeq:NP_954714.2 UniGene:Hs.449471 UniGene:Hs.534644
            UniGene:Hs.712520 ProteinModelPortal:Q6VB85 SMR:Q6VB85
            STRING:Q6VB85 DMDM:74722853 PRIDE:Q6VB85 DNASU:349334
            Ensembl:ENST00000377590 GeneID:100036519 GeneID:349334
            KEGG:hsa:100036519 KEGG:hsa:349334 UCSC:uc004acn.3 CTD:100036519
            CTD:349334 GeneCards:GC09P042708 HGNC:HGNC:24813 MIM:611085
            neXtProt:NX_Q6VB85 InParanoid:Q6VB85 OrthoDB:EOG4JM7Q5
            PhylomeDB:Q6VB85 NextBio:136087 ArrayExpress:Q6VB85 Bgee:Q6VB85
            CleanEx:HS_FOXD4L2 Genevestigator:Q6VB85 Uniprot:Q6VB85
        Length = 416

 Score = 178 (67.7 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 55/179 (30%), Positives = 86/179 (48%)

Query:    15 GQFSPMEPCQ--TSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQA-LKEKHQ-L 70
             G   P +P +  T    P  S +  ED      A+   KPP++Y  LI  A L+  H+ L
Sbjct:    76 GGGGPSDPSEFGTKFRAPPRSAAASED------ARQPAKPPYSYIALITMAILQNPHKRL 129

Query:    71 TVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNL--SDM 126
             T+SGI  +IS RFPYY +    W+NS+RHNLS+N  F K  +     G G+ W+L  +  
Sbjct:   130 TLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQ 189

Query:   127 EPVEDAS----KSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQP 181
             +  ++ S    +  +K+++L        P      ++  ++   P P +     PQP P
Sbjct:   190 DMFDNGSFLRRRKRFKRHQLTPGAHLPHPFPLPAAHAALHNPH-PGPLLGAPAPPQPVP 247


>UNIPROTKB|Q8WXT5 [details] [associations]
            symbol:FOXD4L4 "Forkhead box protein D4-like 4"
            species:9606 "Homo sapiens" [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0001755 "neural crest cell migration"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0007422 "peripheral nervous system development"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0030318
            "melanocyte differentiation" evidence=IBA] [GO:0030513 "positive
            regulation of BMP signaling pathway" evidence=IBA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IBA] [GO:0048484 "enteric nervous system
            development" evidence=IBA] [GO:0048485 "sympathetic nervous system
            development" evidence=IBA] [GO:0048846 "axon extension involved in
            axon guidance" evidence=IBA] [GO:0048937 "lateral line nerve glial
            cell development" evidence=IBA] [GO:0050935 "iridophore
            differentiation" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0051216 "cartilage development" evidence=IBA]
            [GO:0060678 "dichotomous subdivision of terminal units involved in
            ureteric bud branching" evidence=IBA] [GO:0090184 "positive
            regulation of kidney development" evidence=IBA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0001755 GO:GO:0043565 GO:GO:0045944 GO:GO:0007422
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0030513
            GO:GO:0051216 GO:GO:0008134 GO:GO:0007389 GO:GO:0048485
            GO:GO:0030318 GO:GO:0048484 GO:GO:0051090 GO:GO:0090184
            GO:GO:0048846 EMBL:BX284632 eggNOG:COG5025 KO:K09397 GO:GO:0048937
            HOVERGEN:HBG051641 GO:GO:0060678 GO:GO:0050935 HOGENOM:HOG000231285
            HPA:HPA012836 IPI:IPI00847706 RefSeq:NP_001092749.1
            RefSeq:NP_954714.2 UniGene:Hs.534644 UniGene:Hs.712520 DNASU:349334
            GeneID:100036519 GeneID:349334 KEGG:hsa:100036519 KEGG:hsa:349334
            CTD:100036519 CTD:349334 OrthoDB:EOG4JM7Q5 NextBio:136087
            EMBL:AF343005 ProteinModelPortal:Q8WXT5 SMR:Q8WXT5 STRING:Q8WXT5
            PhosphoSite:Q8WXT5 PRIDE:Q8WXT5 Ensembl:ENST00000377413
            GeneCards:GC09M070427 HGNC:HGNC:23762 neXtProt:NX_Q8WXT5
            PharmGKB:PA142671752 InParanoid:Q8WXT5 PhylomeDB:Q8WXT5
            ArrayExpress:Q8WXT5 Bgee:Q8WXT5 CleanEx:HS_FOXD4L4
            Genevestigator:Q8WXT5 GermOnline:ENSG00000204828 Uniprot:Q8WXT5
        Length = 416

 Score = 178 (67.7 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 55/179 (30%), Positives = 86/179 (48%)

Query:    15 GQFSPMEPCQ--TSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQA-LKEKHQ-L 70
             G   P +P +  T    P  S +  ED      A+   KPP++Y  LI  A L+  H+ L
Sbjct:    76 GGGGPSDPSEFGTKFRAPPRSAAASED------ARQPAKPPYSYIALITMAILQNPHKRL 129

Query:    71 TVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNL--SDM 126
             T+SGI  +IS RFPYY +    W+NS+RHNLS+N  F K  +     G G+ W+L  +  
Sbjct:   130 TLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQ 189

Query:   127 EPVEDAS----KSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQP 181
             +  ++ S    +  +K+++L        P      ++  ++   P P +     PQP P
Sbjct:   190 DMFDNGSFLRRRKRFKRHQLTPGAHLPHPFPLPAAHAALHNPH-PGPLLGAPAPPQPVP 247


>UNIPROTKB|Q3SYB3 [details] [associations]
            symbol:FOXD4L6 "Forkhead box protein D4-like 6"
            species:9606 "Homo sapiens" [GO:0043565 "sequence-specific DNA
            binding" evidence=IEA] [GO:0001755 "neural crest cell migration"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0007422 "peripheral nervous system development"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009790 "embryo development" evidence=IBA] [GO:0030318
            "melanocyte differentiation" evidence=IBA] [GO:0030513 "positive
            regulation of BMP signaling pathway" evidence=IBA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IBA] [GO:0048484 "enteric nervous system
            development" evidence=IBA] [GO:0048485 "sympathetic nervous system
            development" evidence=IBA] [GO:0048846 "axon extension involved in
            axon guidance" evidence=IBA] [GO:0048937 "lateral line nerve glial
            cell development" evidence=IBA] [GO:0050935 "iridophore
            differentiation" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0051216 "cartilage development" evidence=IBA]
            [GO:0060678 "dichotomous subdivision of terminal units involved in
            ureteric bud branching" evidence=IBA] [GO:0090184 "positive
            regulation of kidney development" evidence=IBA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0001755 GO:GO:0043565 GO:GO:0045944 GO:GO:0007422
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0030513
            GO:GO:0051216 GO:GO:0008134 GO:GO:0007389 GO:GO:0048485
            GO:GO:0030318 GO:GO:0048484 GO:GO:0051090 GO:GO:0090184
            GO:GO:0048846 EMBL:BX255923 KO:K09397 GO:GO:0048937
            HOVERGEN:HBG051641 GO:GO:0060678 GO:GO:0050935 HOGENOM:HOG000231285
            HPA:HPA012836 HSSP:Q01167 OrthoDB:EOG4JM7Q5 UniGene:Hs.652377
            EMBL:BC103887 EMBL:BC137365 EMBL:BC137366 IPI:IPI00654829
            RefSeq:NP_001078945.1 ProteinModelPortal:Q3SYB3 SMR:Q3SYB3
            IntAct:Q3SYB3 STRING:Q3SYB3 DMDM:166214939 PRIDE:Q3SYB3
            Ensembl:ENST00000377473 GeneID:653404 KEGG:hsa:653404
            UCSC:uc004afi.2 CTD:653404 GeneCards:GC09M069199 HGNC:HGNC:31986
            neXtProt:NX_Q3SYB3 PharmGKB:PA162388805 InParanoid:Q3SYB3
            OMA:RACCTIR GenomeRNAi:653404 NextBio:123194 ArrayExpress:Q3SYB3
            CleanEx:HS_FOXD4L6 Genevestigator:Q3SYB3 Uniprot:Q3SYB3
        Length = 417

 Score = 178 (67.7 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 55/179 (30%), Positives = 86/179 (48%)

Query:    15 GQFSPMEPCQ--TSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQA-LKEKHQ-L 70
             G   P +P +  T    P  S +  ED      A+   KPP++Y  LI  A L+  H+ L
Sbjct:    76 GGGGPSDPSEFGTKFRAPPRSAAASED------ARQPAKPPYSYIALITMAILQNPHKRL 129

Query:    71 TVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNL--SDM 126
             T+SGI  +IS RFPYY +    W+NS+RHNLS+N  F K  +     G G+ W+L  +  
Sbjct:   130 TLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQ 189

Query:   127 EPVEDAS----KSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQP 181
             +  ++ S    +  +K+++L        P      ++  ++   P P +     PQP P
Sbjct:   190 DMFDNGSFLRRRKRFKRHQLTPGAHLPHPFPLPAAHAALHNPH-PGPLLGAPAPPQPVP 247


>UNIPROTKB|Q6VB84 [details] [associations]
            symbol:FOXD4L3 "Forkhead box protein D4-like 3"
            species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 EMBL:AL353608 KO:K09397 HSSP:Q63245
            HOVERGEN:HBG051641 HOGENOM:HOG000231285 HPA:HPA012836
            UniGene:Hs.449471 EMBL:AY344642 IPI:IPI00399264 RefSeq:NP_954586.4
            ProteinModelPortal:Q6VB84 SMR:Q6VB84 STRING:Q6VB84 DMDM:74722852
            PRIDE:Q6VB84 DNASU:286380 Ensembl:ENST00000342833
            Ensembl:ENST00000577592 GeneID:286380 KEGG:hsa:286380
            UCSC:uc004agm.1 CTD:286380 GeneCards:GC09P070917 HGNC:HGNC:18523
            MIM:611086 neXtProt:NX_Q6VB84 PharmGKB:PA134941846
            InParanoid:Q6VB84 OMA:TAWSYCH PhylomeDB:Q6VB84 GenomeRNAi:286380
            NextBio:96184 ArrayExpress:Q6VB84 Bgee:Q6VB84 Genevestigator:Q6VB84
            Uniprot:Q6VB84
        Length = 417

 Score = 178 (67.7 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 55/179 (30%), Positives = 86/179 (48%)

Query:    15 GQFSPMEPCQ--TSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQA-LKEKHQ-L 70
             G   P +P +  T    P  S +  ED      A+   KPP++Y  LI  A L+  H+ L
Sbjct:    76 GGGGPSDPSEFGTKFRAPPRSAAASED------ARQPAKPPYSYIALITMAILQNPHKRL 129

Query:    71 TVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNL--SDM 126
             T+SGI  +IS RFPYY +    W+NS+RHNLS+N  F K  +     G G+ W+L  +  
Sbjct:   130 TLSGICAFISGRFPYYRRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQ 189

Query:   127 EPVEDAS----KSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQP 181
             +  ++ S    +  +K+++L        P      ++  ++   P P +     PQP P
Sbjct:   190 DMFDNGSFLRRRKRFKRHQLTPGAHLPHPFPLPAAHAALHNPR-PGPLLGAPAPPQPVP 247


>ZFIN|ZDB-GENE-990415-267 [details] [associations]
            symbol:foxg1a "forkhead box G1a" species:7955
            "Danio rerio" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IBA] [GO:0009888 "tissue development" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0042472 "inner ear morphogenesis" evidence=IBA] [GO:0007346
            "regulation of mitotic cell cycle" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0030902 "hindbrain development" evidence=IBA]
            [GO:0021954 "central nervous system neuron development"
            evidence=IBA] [GO:0009953 "dorsal/ventral pattern formation"
            evidence=IBA] [GO:0035058 "nonmotile primary cilium assembly"
            evidence=IBA] [GO:0016199 "axon midline choice point recognition"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0045787 "positive
            regulation of cell cycle" evidence=IBA] [GO:0045665 "negative
            regulation of neuron differentiation" evidence=IBA] [GO:0008301
            "DNA binding, bending" evidence=IBA] [GO:0002052 "positive
            regulation of neuroblast proliferation" evidence=IBA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0060059
            "embryonic retina morphogenesis in camera-type eye" evidence=IMP]
            [GO:0030182 "neuron differentiation" evidence=IMP] [GO:0043584
            "nose development" evidence=IMP] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-990415-267 GO:GO:0009792 GO:GO:0007346 GO:GO:0043565
            GO:GO:0045944 GO:GO:0016199 GO:GO:0045665 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0042472 GO:GO:0003690 GO:GO:0030902 GO:GO:0009953
            GO:GO:0008134 GO:GO:0021954 GO:GO:0045787 GO:GO:0002052
            GO:GO:0051090 GO:GO:0035058 GO:GO:0060059 GO:GO:0043584
            GO:GO:0009888 HOVERGEN:HBG051645 OMA:YSTMLTQ
            GeneTree:ENSGT00700000104051 EMBL:BX511189 EMBL:BC092710
            IPI:IPI00492072 UniGene:Dr.75832 SMR:Q568V0
            Ensembl:ENSDART00000104204 InParanoid:Q568V0 Uniprot:Q568V0
        Length = 420

 Score = 178 (67.7 bits), Expect = 4.8e-11, P = 4.8e-11
 Identities = 34/79 (43%), Positives = 52/79 (65%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             + KPPF+Y  LI  A+++  + +LT++GIY++I + FPYY +N   W+NS+RHNLS+N  
Sbjct:   111 YEKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKC 170

Query:   107 FRKGVKA--SQGAGHLWNL 123
             F K  +     G G+ W L
Sbjct:   171 FVKVPRHYDDPGKGNYWML 189


>UNIPROTKB|F1NK07 [details] [associations]
            symbol:F1NK07 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00690000101636 EMBL:AADN02014756 IPI:IPI00576473
            Ensembl:ENSGALT00000037124 OMA:SLIYARE Uniprot:F1NK07
        Length = 347

 Score = 176 (67.0 bits), Expect = 4.9e-11, P = 4.9e-11
 Identities = 36/96 (37%), Positives = 61/96 (63%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A++   + +LT+S IYQ+++E FP+Y ++   W+NS+RHNLS+N  FR
Sbjct:    83 RPPYSYSALIAMAIQSAPERKLTLSHIYQYVAENFPFYKRSKAGWQNSIRHNLSLNDCFR 142

Query:   109 KGVKASQ--GAGHLWNL-SDMEPVEDASKSNWKKNR 141
             K  +     G G+ W L  + E + D    N+++ R
Sbjct:   143 KVPRDEDDPGKGNYWTLFPNCEKMFD--NGNFRRKR 176


>UNIPROTKB|Q9YHC5 [details] [associations]
            symbol:foxg1 "Forkhead box protein G1" species:8355
            "Xenopus laevis" [GO:0003677 "DNA binding" evidence=NAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IMP] [GO:0008285 "negative regulation of
            cell proliferation" evidence=IMP] [GO:0042659 "regulation of cell
            fate specification" evidence=IMP] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=IDA;IMP] [GO:0045893
            "positive regulation of transcription, DNA-dependent"
            evidence=IDA;IMP] [GO:0050768 "negative regulation of neurogenesis"
            evidence=IMP] [GO:0050769 "positive regulation of neurogenesis"
            evidence=IMP] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0045892 GO:GO:0045893
            GO:GO:0008285 GO:GO:0003677 GO:GO:0008284 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0050769 GO:GO:0050768 GO:GO:0042659 HSSP:Q99958 CTD:2290
            HOVERGEN:HBG051645 KO:K09385 EMBL:AF101387 RefSeq:NP_001079165.1
            UniGene:Xl.416 ProteinModelPortal:Q9YHC5 SMR:Q9YHC5 GeneID:373732
            KEGG:xla:373732 Xenbase:XB-GENE-865339 Uniprot:Q9YHC5
        Length = 436

 Score = 178 (67.7 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 34/79 (43%), Positives = 52/79 (65%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             + KPPF+Y  LI  A+++  + +LT++GIY++I + FPYY +N   W+NS+RHNLS+N  
Sbjct:   126 YEKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKC 185

Query:   107 FRKGVKA--SQGAGHLWNL 123
             F K  +     G G+ W L
Sbjct:   186 FVKVPRHYDDPGKGNYWML 204


>UNIPROTKB|Q32NP8 [details] [associations]
            symbol:foxc1-b "Forkhead box protein C1-B" species:8355
            "Xenopus laevis" [GO:0003677 "DNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0006351 "transcription,
            DNA-dependent" evidence=ISS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0007155 "cell
            adhesion" evidence=ISS] [GO:0007498 "mesoderm development"
            evidence=ISS] [GO:0048793 "pronephros development" evidence=ISS]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0006355 GO:GO:0007498 GO:GO:0003677
            GO:GO:0043565 GO:GO:0007155 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0048793 KO:K09396
            HOVERGEN:HBG051640 EMBL:BC108535 RefSeq:NP_001089846.1
            UniGene:Xl.76079 ProteinModelPortal:Q32NP8 SMR:Q32NP8 GeneID:734912
            KEGG:xla:734912 CTD:734912 Xenbase:XB-GENE-865236 Uniprot:Q32NP8
        Length = 495

 Score = 179 (68.1 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 54/215 (25%), Positives = 97/215 (45%)

Query:    51 KPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             KPP++Y  LI  A++     ++T++GIYQ+I ERFP+Y  N   W+NS+RHNLS+N  F 
Sbjct:    79 KPPYSYIALITMAIQNAPDKKITLNGIYQFIMERFPFYRDNKQGWQNSIRHNLSLNECFV 138

Query:   109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDD----YSGQN 162
             K  +  +  G G  W L D +        ++ + R +   + +      +D        N
Sbjct:   139 KVPRDDKKPGKGSYWTL-DPDSYNMFENGSFLRRRRRFKKKDVSKDATKEDKERLLKEHN 197

Query:   163 STETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLY----IQS 218
              +++ A   +   Q Q Q     S    P++  ++ ++   + P +     L     I+S
Sbjct:   198 GSQSAAAQQQRQQQNQAQAEQDGS--SQPVRIQDIKTENGTSSPPQSMSPALSAVPKIES 255

Query:   219 NDNVL-YTPHEDHKLYHNDNVLYTPGEDHKLYQYE 252
              D+    +    H +  N ++     E H  +Q +
Sbjct:   256 PDSSSSMSSGSPHSIPSNRSMSLEAAESHHPHQQQ 290


>UNIPROTKB|F1NK01 [details] [associations]
            symbol:Gga.51501 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00690000101636 EMBL:AADN02042527 EMBL:AADN02064686
            EMBL:AADN02064687 IPI:IPI00819927 Ensembl:ENSGALT00000037131
            ArrayExpress:F1NK01 Uniprot:F1NK01
        Length = 444

 Score = 178 (67.7 bits), Expect = 5.5e-11, P = 5.5e-11
 Identities = 41/114 (35%), Positives = 63/114 (55%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P+  K   KPP++Y  LI  A++     ++T++GIYQ+I +RFP+Y +N   W+NS+RHN
Sbjct:    31 PAAPKDLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHN 90

Query:   101 LSINPHFRKGVKASQ--GAGHLWNLS--DMEPVEDASKSNWKKNRLKTYLESLQ 150
             LS+N  F K  +  +  G G  W L        E+ S    ++   K  +E LQ
Sbjct:    91 LSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDVEKLQ 144


>UNIPROTKB|Q90964 [details] [associations]
            symbol:FOXG1 "Forkhead box protein G1" species:9031 "Gallus
            gallus" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0002052 "positive regulation of neuroblast proliferation"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IBA] [GO:0009888 "tissue development" evidence=IBA]
            [GO:0009953 "dorsal/ventral pattern formation" evidence=IBA]
            [GO:0016199 "axon midline choice point recognition" evidence=IBA]
            [GO:0021954 "central nervous system neuron development"
            evidence=IBA] [GO:0030902 "hindbrain development" evidence=IBA]
            [GO:0035058 "nonmotile primary cilium assembly" evidence=IBA]
            [GO:0042472 "inner ear morphogenesis" evidence=IBA] [GO:0043584
            "nose development" evidence=IBA] [GO:0045665 "negative regulation
            of neuron differentiation" evidence=IBA] [GO:0045787 "positive
            regulation of cell cycle" evidence=IBA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0009792 GO:GO:0007346 GO:GO:0043565 GO:GO:0045944
            GO:GO:0016199 GO:GO:0045665 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0042472
            GO:GO:0003690 GO:GO:0030902 GO:GO:0009953 GO:GO:0008134
            GO:GO:0021954 GO:GO:0045787 GO:GO:0002052 GO:GO:0051090
            GO:GO:0035058 GO:GO:0043584 eggNOG:COG5025 GO:GO:0009888
            EMBL:L36814 EMBL:U47275 IPI:IPI00581171 PIR:A55909
            RefSeq:NP_990524.1 UniGene:Gga.657 ProteinModelPortal:Q90964
            SMR:Q90964 STRING:Q90964 GeneID:396110 KEGG:gga:396110 CTD:2290
            HOGENOM:HOG000112629 HOVERGEN:HBG051645 InParanoid:Q90964 KO:K09385
            OrthoDB:EOG4M0F2T NextBio:20816168 Uniprot:Q90964
        Length = 451

 Score = 178 (67.7 bits), Expect = 5.7e-11, P = 5.7e-11
 Identities = 34/79 (43%), Positives = 52/79 (65%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             + KPPF+Y  LI  A+++  + +LT++GIY++I + FPYY +N   W+NS+RHNLS+N  
Sbjct:   141 YEKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKC 200

Query:   107 FRKGVKA--SQGAGHLWNL 123
             F K  +     G G+ W L
Sbjct:   201 FVKVPRHYDDPGKGNYWML 219


>POMBASE|SPBC32H8.11 [details] [associations]
            symbol:mei4 "meiotic forkhead transcription factor Mei4"
            species:4896 "Schizosaccharomyces pombe" [GO:0000978 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding" evidence=ISO;IDA] [GO:0001077 "RNA polymerase II core
            promoter proximal region sequence-specific DNA binding
            transcription factor activity involved in positive regulation of
            transcription" evidence=IMP] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0010673 "positive regulation of transcription
            from RNA polymerase II promoter during meiosis" evidence=IMP]
            [GO:0010674 "negative regulation of transcription from RNA
            polymerase II promoter during meiosis" evidence=IEP] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IMP] [GO:0051037 "regulation of transcription
            during meiosis" evidence=IDA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 PomBase:SPBC32H8.11 GO:GO:0005634
            EMBL:CU329671 Gene3D:1.10.10.10 InterPro:IPR011991
            GenomeReviews:CU329671_GR GO:GO:0000978 GO:GO:0001077 EMBL:AB004534
            GO:GO:0010673 eggNOG:COG5025 GO:GO:0010674 OrthoDB:EOG4XKZH6
            EMBL:AB012695 PIR:T43358 RefSeq:NP_595617.1
            ProteinModelPortal:O13606 SMR:O13606 DIP:DIP-59802N STRING:O13606
            EnsemblFungi:SPBC32H8.11.1 GeneID:2540241 KEGG:spo:SPBC32H8.11
            NextBio:20801372 Uniprot:O13606
        Length = 517

 Score = 179 (68.1 bits), Expect = 5.7e-11, P = 5.7e-11
 Identities = 38/81 (46%), Positives = 49/81 (60%)

Query:    48 THRKPPFTYTELIEQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINP 105
             T  KPP +Y  LI  A+ + H  QLT+SGIY WI   F YY  +D  W+NS+RHNLS+N 
Sbjct:    78 TGEKPPCSYATLIGLAILQSHNKQLTLSGIYTWIRNTFRYYLNHDGGWQNSIRHNLSLNK 137

Query:   106 HFRKGVKASQGA---GHLWNL 123
              F K V+  +G    GH W +
Sbjct:   138 AFIK-VEKPKGKTLKGHYWTI 157

 Score = 143 (55.4 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 75/281 (26%), Positives = 114/281 (40%)

Query:    69 QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA--GHLWNLSDM 126
             QLT+SGIY WI   F YY  +D  W+NS+RHNLS+N  F K  K       GH W + D 
Sbjct:   101 QLTLSGIYTWIRNTFRYYLNHDGGWQNSIRHNLSLNKAFIKVEKPKGKTLKGHYWTI-DP 159

Query:   127 EPVED----------ASKSNWKKNRLKTYLESLQP---------------SEWGDDYSGQ 161
             + +++          ++ SN KK R  +    ++P               + +    S  
Sbjct:   160 DHMQNFVSVRLHRSHSTDSNSKK-RPSSKCHEIKPLTTREIPLARKRSRLNSFNSSTSTS 218

Query:   162 NSTETPAPSME---TMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLYIQS 218
              S+   A  +    + P  Q   LN+ ++   PL P  V S  S +   E          
Sbjct:   219 GSSSNVAAEVSNDASQPSNQDSSLNS-NIVKPPLPPSNVQSNSSSS---ENVPKPNAETQ 274

Query:   219 NDNVLYTPHEDHKLYHNDNVLYTPGEDHKLYQYEPSKNLIM-AAY---DGGQEKVEIFAS 274
              D      HE   LY N N       D +LY+    +N+ +   Y   D G  +   F S
Sbjct:   275 EDLPTIDAHES-SLYENVN-------DSRLYEVPACRNMALNTGYSDADPGYLRTS-FRS 325

Query:   275 DTISKNLIMAAYDGGQEKVEIFASDTISRKSIHRRKWKSSR 315
             +  S N +   Y   +E+  + A   +S++S     + SSR
Sbjct:   326 N--SHNSL--PYSANEEEDVLQADFLVSQQSSMVSSYVSSR 362


>ZFIN|ZDB-GENE-060929-1178 [details] [associations]
            symbol:foxj1a "forkhead box J1a" species:7955
            "Danio rerio" [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0045409 "negative
            regulation of interleukin-6 biosynthetic process" evidence=IBA]
            [GO:0002635 "negative regulation of germinal center formation"
            evidence=IBA] [GO:0019904 "protein domain specific binding"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0035089 "establishment of apical/basal cell
            polarity" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0030324 "lung development" evidence=IBA]
            [GO:0002897 "positive regulation of central B cell tolerance
            induction" evidence=IBA] [GO:0050900 "leukocyte migration"
            evidence=IBA] [GO:0032088 "negative regulation of NF-kappaB
            transcription factor activity" evidence=IBA] [GO:0050869 "negative
            regulation of B cell activation" evidence=IBA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0060972 "left/right pattern formation"
            evidence=IBA] [GO:0033085 "negative regulation of T cell
            differentiation in thymus" evidence=IBA] [GO:0030036 "actin
            cytoskeleton organization" evidence=IBA] [GO:0030855 "epithelial
            cell differentiation" evidence=IBA] [GO:0042130 "negative
            regulation of T cell proliferation" evidence=IBA] [GO:0032862
            "activation of Rho GTPase activity" evidence=IBA] [GO:0002924
            "negative regulation of humoral immune response mediated by
            circulating immunoglobulin" evidence=IBA] [GO:0009611 "response to
            wounding" evidence=IMP] [GO:0060296 "regulation of cilium beat
            frequency involved in ciliary motility" evidence=IMP] [GO:0003351
            "epithelial cilium movement" evidence=IMP] [GO:0042384 "cilium
            assembly" evidence=IDA;IMP] [GO:0060271 "cilium morphogenesis"
            evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0007368 "determination of left/right
            symmetry" evidence=IMP] [GO:0003146 "heart jogging" evidence=IMP]
            [GO:0001947 "heart looping" evidence=IMP] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-060929-1178 GO:GO:0019904 GO:GO:0009611 GO:GO:0042130
            GO:GO:0030036 GO:GO:0030324 GO:GO:0050900 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0042384 GO:GO:0001947
            GO:GO:0032088 GO:GO:0008134 GO:GO:0030855 GO:GO:0060296
            GO:GO:0033085 GO:GO:0003146 GO:GO:0032862 GO:GO:0060972
            GO:GO:0003351 GO:GO:0002924 HOVERGEN:HBG056832 GO:GO:0035089
            GO:GO:0050869 GO:GO:0002635 GO:GO:0045409 GO:GO:0002897
            EMBL:BC124228 EMBL:BC164538 IPI:IPI00803915 UniGene:Dr.79389
            SMR:Q08CI2 STRING:Q08CI2 InParanoid:Q08CI2 Uniprot:Q08CI2
        Length = 458

 Score = 178 (67.7 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 46/137 (33%), Positives = 69/137 (50%)

Query:    14 PGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSH----AKTHRKPPFTYTELIEQALK--EK 67
             PG+ +    C+       PS   V    CP      +  H KPP++Y  LI  A++  +K
Sbjct:   103 PGKPTAASFCRVPMFSALPSL--VAHGHCPDEVDYKSNPHIKPPYSYATLICMAMQASKK 160

Query:    68 HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRK--GVKASQGAGHLWNLSD 125
              ++T+S IY+WI++ F Y+   D  W++S+RHNLS+N  F K    K   G G  W + D
Sbjct:   161 TKITLSCIYKWITDNFCYFRHADPTWQSSIRHNLSLNKCFIKVPRQKDEPGKGGFWKI-D 219

Query:   126 MEPVEDASKSNWKKNRL 142
              +  E      +KK RL
Sbjct:   220 PQYAERLLNGAYKKRRL 236


>UNIPROTKB|Q5M7L9 [details] [associations]
            symbol:foxd3 "Forkhead box protein D3" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0001658 "branching involved in
            ureteric bud morphogenesis" evidence=IBA] [GO:0001755 "neural crest
            cell migration" evidence=IBA] [GO:0001822 "kidney development"
            evidence=IBA] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0007422 "peripheral
            nervous system development" evidence=IBA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0009790 "embryo development"
            evidence=IBA] [GO:0014034 "neural crest cell fate commitment"
            evidence=ISS] [GO:0030318 "melanocyte differentiation"
            evidence=IBA] [GO:0045892 "negative regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0048484 "enteric nervous system development" evidence=IBA]
            [GO:0048485 "sympathetic nervous system development" evidence=IBA]
            [GO:0048846 "axon extension involved in axon guidance"
            evidence=IBA] [GO:0048937 "lateral line nerve glial cell
            development" evidence=IBA] [GO:0050768 "negative regulation of
            neurogenesis" evidence=ISS] [GO:0050769 "positive regulation of
            neurogenesis" evidence=ISS] [GO:0050935 "iridophore
            differentiation" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0051216 "cartilage development" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0045892 GO:GO:0001755 GO:GO:0043565 GO:GO:0045944
            GO:GO:0007422 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0001822 GO:GO:0050769
            GO:GO:0003690 GO:GO:0051216 GO:GO:0008134 GO:GO:0007389
            GO:GO:0001658 GO:GO:0048485 GO:GO:0030318 GO:GO:0050768
            GO:GO:0048484 GO:GO:0051090 GO:GO:0048846 eggNOG:COG5025
            GeneTree:ENSGT00700000104135 KO:K09397 GO:GO:0048937 HSSP:Q63245
            GO:GO:0014034 HOVERGEN:HBG051641 OrthoDB:EOG45MN6S GO:GO:0050935
            HOGENOM:HOG000231285 CTD:27022 EMBL:CR760163 EMBL:BC088566
            RefSeq:NP_001011383.1 UniGene:Str.11302 ProteinModelPortal:Q5M7L9
            SMR:Q5M7L9 STRING:Q5M7L9 Ensembl:ENSXETT00000023699 GeneID:496851
            KEGG:xtr:496851 Xenbase:XB-GENE-487289 InParanoid:Q5M7L9
            OMA:SSMISGH Bgee:Q5M7L9 Uniprot:Q5M7L9
        Length = 369

 Score = 176 (67.0 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 46/132 (34%), Positives = 70/132 (53%)

Query:    18 SPMEPCQTSSHKPEPSQSE-VEDRCCPSHAKTHRKPPFTYTELIEQALKEKHQ--LTVSG 74
             SP      +  K E  Q E ++++  P ++    KPP++Y  LI  A+ +  Q  LT+SG
Sbjct:    62 SPSGSANEAEGKGESQQQEGMQNK--PKNSLV--KPPYSYIALITMAILQSPQKKLTLSG 117

Query:    75 IYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNLSDM-EPVED 131
             I ++IS RFPYY +    W+NS+RHNLS+N  F K  +   + G G+ W L    E + D
Sbjct:   118 ICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFD 177

Query:   132 ASKSNWKKNRLK 143
                   ++ R K
Sbjct:   178 NGSFLRRRKRFK 189


>ZFIN|ZDB-GENE-030505-1 [details] [associations]
            symbol:foxi1 "forkhead box i1" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA;IDA] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA;IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0006357 "regulation
            of transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0005667 "transcription factor complex" evidence=IBA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0003705 "RNA polymerase II distal enhancer sequence-specific
            DNA binding transcription factor activity" evidence=IBA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0060788 "ectodermal placode
            formation" evidence=IGI] [GO:0043049 "otic placode formation"
            evidence=IGI;IMP] [GO:0030916 "otic vesicle formation"
            evidence=IGI;IMP] [GO:0009957 "epidermal cell fate specification"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 ZFIN:ZDB-GENE-030505-1 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0003690 GO:GO:0008134 GO:GO:0007389
            GO:GO:0051090 GO:GO:0043049 GO:GO:0009957 HSSP:Q99958
            HOGENOM:HOG000236333 HOVERGEN:HBG067944 EMBL:AY242057
            IPI:IPI00513327 UniGene:Dr.20969 ProteinModelPortal:Q7T2N8
            SMR:Q7T2N8 STRING:Q7T2N8 InParanoid:Q7T2N8 ArrayExpress:Q7T2N8
            Uniprot:Q7T2N8
        Length = 419

 Score = 177 (67.4 bits), Expect = 6.3e-11, P = 6.3e-11
 Identities = 44/148 (29%), Positives = 77/148 (52%)

Query:    51 KPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A++  +  +LT+S IYQ++++ FP+Y ++   W+NS+RHNLS+N  F+
Sbjct:   183 RPPYSYSALIAMAIQNAQDKKLTLSQIYQYVADNFPFYKKSKAGWQNSIRHNLSLNDCFK 242

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTE 165
             K  +     G G+ W L  + E + D      K+ R          SE     +  +S  
Sbjct:   243 KVARDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRADGNAMSVKSEDALKLADTSSLM 302

Query:   166 TPAP-SMETMP-QPQPQPLNTMSLAHDP 191
             + +P S++  P    P+   + S  H P
Sbjct:   303 SASPPSLQNSPTSSDPKSSPSPSAEHSP 330


>UNIPROTKB|O15353 [details] [associations]
            symbol:FOXN1 "Forkhead box protein N1" species:9606 "Homo
            sapiens" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0002260 "lymphocyte homeostasis" evidence=IEA] [GO:0033081
            "regulation of T cell differentiation in thymus" evidence=IEA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
            "RNA polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0008134 "transcription
            factor binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009790 "embryo development" evidence=IBA]
            [GO:0030216 "keratinocyte differentiation" evidence=IBA]
            [GO:0048538 "thymus development" evidence=IBA] [GO:0050673
            "epithelial cell proliferation" evidence=IBA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
            evidence=TAS] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=TAS] [GO:0006952 "defense
            response" evidence=TAS] [GO:0009887 "organ morphogenesis"
            evidence=TAS] [GO:0008544 "epidermis development" evidence=TAS]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            EMBL:Y11741 GO:GO:0030216 GO:GO:0006952 GO:GO:0043565
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0009887 GO:GO:0003690
            GO:GO:0048538 GO:GO:0008134 EMBL:CH471159 GO:GO:0050673
            GO:GO:0007389 GO:GO:0051090 eggNOG:COG5025 EMBL:Y11742 EMBL:Y11743
            EMBL:Y11744 EMBL:Y11745 EMBL:Y11746 EMBL:Y11739 EMBL:AK313878
            IPI:IPI00006163 RefSeq:NP_003584.2 UniGene:Hs.663679
            ProteinModelPortal:O15353 SMR:O15353 STRING:O15353
            PhosphoSite:O15353 PRIDE:O15353 DNASU:8456 Ensembl:ENST00000226247
            Ensembl:ENST00000577642 Ensembl:ENST00000579795
            Ensembl:ENST00000584474 GeneID:8456 KEGG:hsa:8456 UCSC:uc002hbj.3
            CTD:8456 GeneCards:GC17P026850 H-InvDB:HIX0039248 HGNC:HGNC:12765
            HPA:HPA041520 MIM:600838 MIM:601705 neXtProt:NX_O15353
            Orphanet:169095 PharmGKB:PA37368 HOGENOM:HOG000059593
            HOVERGEN:HBG051653 InParanoid:O15353 KO:K09407 OMA:PAPQSKH
            OrthoDB:EOG4DZ1TZ PhylomeDB:O15353 GenomeRNAi:8456 NextBio:31648
            Bgee:O15353 CleanEx:HS_FOXN1 Genevestigator:O15353
            GermOnline:ENSG00000109101 Uniprot:O15353
        Length = 648

 Score = 173 (66.0 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
 Identities = 57/183 (31%), Positives = 83/183 (45%)

Query:     3 YASLEPM--ELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELI 60
             Y S +P   +  P G   P+ P   SSH     Q          H     KP ++Y+ LI
Sbjct:   224 YCSSQPPFHQYSPGGGSYPI-PYLGSSHYQY--QRMAPQASTDGHQPLFPKPIYSYSILI 280

Query:    61 EQALKEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA- 117
               ALK      L VS IY +++E FPY+    D WKNSVRHNLS+N  F K V+   G+ 
Sbjct:   281 FMALKNSKTGSLPVSEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEK-VENKSGSS 339

Query:   118 ---GHLW--NLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSME 172
                G LW  N + ++ +++  +  WK+       +S+   E  D   G    +  +P + 
Sbjct:   340 SRKGCLWALNPAKIDKMQEELQK-WKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLG 398

Query:   173 TMP 175
               P
Sbjct:   399 CPP 401

 Score = 49 (22.3 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query:   166 TPAPSMETMPQPQPQP 181
             T +P+  +MP PQP P
Sbjct:   563 TSSPTSSSMPPPQPPP 578

 Score = 39 (18.8 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query:   167 PAPSMETMPQPQP--QPLNTMSLAHDP 191
             P  S+   P P P   PL  + + H P
Sbjct:   422 PLHSLHPAPGPIPGKNPLQDLLMGHTP 448


>RGD|2619 [details] [associations]
            symbol:Foxg1 "forkhead box G1" species:10116 "Rattus norvegicus"
          [GO:0002052 "positive regulation of neuroblast proliferation"
          evidence=ISO;IBA] [GO:0003674 "molecular_function" evidence=ND]
          [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0003705
          "RNA polymerase II distal enhancer sequence-specific DNA binding
          transcription factor activity" evidence=IBA] [GO:0005575
          "cellular_component" evidence=ND] [GO:0005634 "nucleus" evidence=ISO]
          [GO:0005667 "transcription factor complex" evidence=IBA] [GO:0007346
          "regulation of mitotic cell cycle" evidence=ISO;IBA] [GO:0007420
          "brain development" evidence=IEP] [GO:0007568 "aging" evidence=IEP]
          [GO:0008134 "transcription factor binding" evidence=IBA] [GO:0008301
          "DNA binding, bending" evidence=IBA] [GO:0009792 "embryo development
          ending in birth or egg hatching" evidence=IBA] [GO:0009888 "tissue
          development" evidence=IBA] [GO:0009953 "dorsal/ventral pattern
          formation" evidence=ISO;IBA] [GO:0016199 "axon midline choice point
          recognition" evidence=ISO;IBA] [GO:0021954 "central nervous system
          neuron development" evidence=ISO;IBA] [GO:0022008 "neurogenesis"
          evidence=ISO] [GO:0030900 "forebrain development" evidence=IEA;ISO]
          [GO:0030902 "hindbrain development" evidence=IBA] [GO:0035058
          "nonmotile primary cilium assembly" evidence=IBA] [GO:0042472 "inner
          ear morphogenesis" evidence=ISO;IBA] [GO:0043565 "sequence-specific
          DNA binding" evidence=IEA] [GO:0043584 "nose development"
          evidence=IBA] [GO:0045665 "negative regulation of neuron
          differentiation" evidence=ISO;IBA] [GO:0045787 "positive regulation
          of cell cycle" evidence=ISO;IBA] [GO:0045892 "negative regulation of
          transcription, DNA-dependent" evidence=IEA;ISO] [GO:0045944 "positive
          regulation of transcription from RNA polymerase II promoter"
          evidence=IBA] [GO:0048667 "cell morphogenesis involved in neuron
          differentiation" evidence=ISO] [GO:0051090 "regulation of
          sequence-specific DNA binding transcription factor activity"
          evidence=IBA] [GO:2000177 "regulation of neural precursor cell
          proliferation" evidence=ISO] InterPro:IPR001766 InterPro:IPR018122
          Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
          PROSITE:PS50039 SMART:SM00339 RGD:2619 GO:GO:0009792 GO:GO:0007346
          GO:GO:0007568 GO:GO:0043565 GO:GO:0045944 GO:GO:0016199 GO:GO:0045665
          Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
          GO:GO:0008301 GO:GO:0042472 GO:GO:0003690 GO:GO:0030902 GO:GO:0009953
          GO:GO:0008134 GO:GO:0021954 GO:GO:0045787 GO:GO:0002052 GO:GO:0051090
          GO:GO:0035058 GO:GO:0043584 GO:GO:0009888 CTD:2290 HOVERGEN:HBG051645
          KO:K09385 EMBL:M87634 IPI:IPI00204255 PIR:JH0672 RefSeq:NP_036692.1
          UniGene:Rn.9864 ProteinModelPortal:Q00939 SMR:Q00939 STRING:Q00939
          PhosphoSite:Q00939 PRIDE:Q00939 GeneID:24370 KEGG:rno:24370
          UCSC:RGD:2619 eggNOG:NOG242525 NextBio:603113 Genevestigator:Q00939
          Uniprot:Q00939
        Length = 480

 Score = 178 (67.7 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 34/79 (43%), Positives = 52/79 (65%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             + KPPF+Y  LI  A+++  + +LT++GIY++I + FPYY +N   W+NS+RHNLS+N  
Sbjct:   170 YEKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKC 229

Query:   107 FRKGVKA--SQGAGHLWNL 123
             F K  +     G G+ W L
Sbjct:   230 FVKVPRHYDDPGKGNYWML 248


>UNIPROTKB|Q8JIT5 [details] [associations]
            symbol:foxi1c "Forkhead box protein I1c" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISS]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0045893 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 HSSP:Q99958
            HOVERGEN:HBG067944 KO:K09401 EMBL:AJ487620 RefSeq:NP_001091120.1
            UniGene:Xl.43219 ProteinModelPortal:Q8JIT5 SMR:Q8JIT5 GeneID:446212
            KEGG:xla:446212 CTD:446212 Xenbase:XB-GENE-5996119 Uniprot:Q8JIT5
        Length = 381

 Score = 176 (67.0 bits), Expect = 6.5e-11, P = 6.5e-11
 Identities = 45/136 (33%), Positives = 74/136 (54%)

Query:    51 KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A++   + +LT+S IYQ+++E FP+Y ++   W+NS+RHNLS+N  F+
Sbjct:   129 RPPYSYSALIAMAIQNAPEKKLTLSQIYQYVAENFPFYKRSKAGWQNSIRHNLSLNDCFK 188

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLK--TYLESLQ-PSEWGDDYSGQN 162
             K  +     G G+ W L  + E + D      K+ R    +  E++    E G    G  
Sbjct:   189 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRSDSSSAEAVTVKGEEGRPALGGK 248

Query:   163 STETPAPSMETMPQPQ 178
               E+P  SM T   P+
Sbjct:   249 GGESP--SMLTPSSPE 262


>FB|FBgn0003430 [details] [associations]
            symbol:slp1 "sloppy paired 1" species:7227 "Drosophila
            melanogaster" [GO:0005634 "nucleus" evidence=ISS;NAS;IDA]
            [GO:0007380 "specification of segmental identity, head"
            evidence=IEP;IGI;IMP] [GO:0060914 "heart formation" evidence=IMP]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IBA;IDA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA;IDA] [GO:0007379
            "segment specification" evidence=NAS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=NAS] [GO:0042305 "specification of segmental identity,
            mandibular segment" evidence=NAS] [GO:0008595 "anterior/posterior
            axis specification, embryo" evidence=NAS] [GO:0007507 "heart
            development" evidence=TAS] [GO:0007350 "blastoderm segmentation"
            evidence=TAS] [GO:0001707 "mesoderm formation" evidence=TAS]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0035058 "nonmotile primary cilium assembly" evidence=IBA]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0048665
            "neuron fate specification" evidence=IBA] [GO:0002052 "positive
            regulation of neuroblast proliferation" evidence=IBA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0009888 "tissue
            development" evidence=IBA] [GO:0016199 "axon midline choice point
            recognition" evidence=IBA] [GO:0009792 "embryo development ending
            in birth or egg hatching" evidence=IBA] [GO:0007346 "regulation of
            mitotic cell cycle" evidence=IBA] [GO:0045944 "positive regulation
            of transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0045787 "positive regulation of cell cycle" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0045665 "negative regulation of neuron differentiation"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0009953 "dorsal/ventral pattern formation"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0009792 GO:GO:0007346 EMBL:AE014134 GO:GO:0008595
            GO:GO:0043565 GO:GO:0045944 GO:GO:0016199 GO:GO:0045665
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0000122 GO:GO:0008301 GO:GO:0003690 GO:GO:0001707
            GO:GO:0007366 GO:GO:0009953 GO:GO:0008134 GO:GO:0060914
            GO:GO:0048665 GO:GO:0045787 GO:GO:0002052 GO:GO:0051090
            GO:GO:0035058 eggNOG:COG5025 GO:GO:0007380 EMBL:X66095 EMBL:X66096
            RefSeq:NP_476730.1 UniGene:Dm.4659 ProteinModelPortal:P32030
            SMR:P32030 IntAct:P32030 MINT:MINT-314680 STRING:P32030
            PRIDE:P32030 GeneID:33607 KEGG:dme:Dmel_CG16738 CTD:33607
            FlyBase:FBgn0003430 InParanoid:P32030 OrthoDB:EOG4THT93
            GenomeRNAi:33607 NextBio:784418 Bgee:P32030 GermOnline:CG16738
            Uniprot:P32030
        Length = 322

 Score = 174 (66.3 bits), Expect = 6.6e-11, P = 6.6e-11
 Identities = 33/78 (42%), Positives = 52/78 (66%)

Query:    50 RKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  LI  A+++  + +LT++GIYQ++  RFPY+  N   W+NS+RHNLS+N  F
Sbjct:   119 KKPPYSYNALIMMAIQDSPEQRLTLNGIYQYLINRFPYFKANKRGWQNSIRHNLSLNKCF 178

Query:   108 RKGVKA--SQGAGHLWNL 123
              K  ++    G G+ W L
Sbjct:   179 TKIPRSYDDPGKGNYWIL 196


>UNIPROTKB|P55316 [details] [associations]
            symbol:FOXG1 "Forkhead box protein G1" species:9606 "Homo
            sapiens" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0007568 "aging" evidence=IEA] [GO:0030900 "forebrain
            development" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] [GO:0002052 "positive regulation of neuroblast
            proliferation" evidence=IBA] [GO:0003690 "double-stranded DNA
            binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IBA] [GO:0009888 "tissue development" evidence=IBA]
            [GO:0009953 "dorsal/ventral pattern formation" evidence=IBA]
            [GO:0016199 "axon midline choice point recognition" evidence=IBA]
            [GO:0021954 "central nervous system neuron development"
            evidence=IBA] [GO:0030902 "hindbrain development" evidence=IBA]
            [GO:0035058 "nonmotile primary cilium assembly" evidence=IBA]
            [GO:0042472 "inner ear morphogenesis" evidence=IBA] [GO:0043584
            "nose development" evidence=IBA] [GO:0045665 "negative regulation
            of neuron differentiation" evidence=IBA] [GO:0045787 "positive
            regulation of cell cycle" evidence=IBA] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0003677 "DNA
            binding" evidence=TAS] [GO:0007420 "brain development"
            evidence=TAS] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0009792 GO:GO:0007346 GO:GO:0045892
            GO:GO:0043565 GO:GO:0045944 GO:GO:0016199 GO:GO:0030900
            GO:GO:0045665 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0042472 EMBL:CH471078
            GO:GO:0003690 GO:GO:0030902 GO:GO:0009953 GO:GO:0008134
            Pathway_Interaction_DB:smad2_3nuclearpathway GO:GO:0021954
            GO:GO:0045787 GO:GO:0002052 GO:GO:0051090 GO:GO:0035058
            GO:GO:0043584 eggNOG:COG5025 GO:GO:0009888 CTD:2290
            HOGENOM:HOG000112629 HOVERGEN:HBG051645 KO:K09385 OrthoDB:EOG4M0F2T
            EMBL:X74142 EMBL:X74143 EMBL:X74144 EMBL:X78202 EMBL:AL049777
            EMBL:BC050072 IPI:IPI00024386 PIR:B54743 PIR:I37451
            RefSeq:NP_005240.3 UniGene:Hs.632336 UniGene:Hs.740590
            UniGene:Hs.741222 ProteinModelPortal:P55316 SMR:P55316
            IntAct:P55316 MINT:MINT-1407364 STRING:P55316 PhosphoSite:P55316
            DMDM:152031604 PaxDb:P55316 PRIDE:P55316 Ensembl:ENST00000313071
            Ensembl:ENST00000382535 GeneID:2290 KEGG:hsa:2290 UCSC:uc001wqe.3
            GeneCards:GC14P029235 HGNC:HGNC:3811 MIM:164874 MIM:613454
            neXtProt:NX_P55316 Orphanet:261229 Orphanet:261144 Orphanet:3095
            PharmGKB:PA162388806 PharmGKB:PA28228 InParanoid:P55316 OMA:YSTMLTQ
            PhylomeDB:P55316 GenomeRNAi:2290 NextBio:9307 Bgee:P55316
            CleanEx:HS_FOXG1 Genevestigator:P55316 GermOnline:ENSG00000176165
            Uniprot:P55316
        Length = 489

 Score = 178 (67.7 bits), Expect = 6.7e-11, P = 6.7e-11
 Identities = 34/79 (43%), Positives = 52/79 (65%)

Query:    49 HRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             + KPPF+Y  LI  A+++  + +LT++GIY++I + FPYY +N   W+NS+RHNLS+N  
Sbjct:   179 YEKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKC 238

Query:   107 FRKGVKA--SQGAGHLWNL 123
             F K  +     G G+ W L
Sbjct:   239 FVKVPRHYDDPGKGNYWML 257


>UNIPROTKB|F6X786 [details] [associations]
            symbol:FOXN1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GeneTree:ENSGT00700000104051
            CTD:8456 KO:K09407 OMA:PAPQSKH EMBL:AAEX03006665
            Ensembl:ENSCAFT00000029700 RefSeq:XP_548288.2 GeneID:491168
            KEGG:cfa:491168 Uniprot:F6X786
        Length = 643

 Score = 183 (69.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
 Identities = 58/179 (32%), Positives = 81/179 (45%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQAL 64
             S  P     PG  S   P   SSH P   Q          H     KP ++Y+ LI  AL
Sbjct:   225 SQPPFHQYSPGGGSYPIPYLGSSHYPY--QRIAPQASTDGHQPLFPKPIYSYSILIFMAL 282

Query:    65 KEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA----G 118
             K      L VS IY +++E FPY+    D WKNSVRHNLS+N  F K V+   G+    G
Sbjct:   283 KNSKTGSLPVSEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEK-VENKSGSSSRKG 341

Query:   119 HLW--NLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMP 175
              LW  N + ++ +++  +  WK+       +S+   E  D   G+   +  +P M   P
Sbjct:   342 CLWALNPAKIDKMQEELQK-WKRKDPIAVRKSMAKPEELDSLIGEKREKLGSPLMACPP 399

 Score = 37 (18.1 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query:   166 TPAPSMETMPQPQP 179
             T +P+  +MP P P
Sbjct:   561 TSSPTSSSMPPPPP 574


>UNIPROTKB|E2R649 [details] [associations]
            symbol:FOXN1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0050673 "epithelial cell proliferation"
            evidence=IEA] [GO:0033081 "regulation of T cell differentiation in
            thymus" evidence=IEA] [GO:0030216 "keratinocyte differentiation"
            evidence=IEA] [GO:0002260 "lymphocyte homeostasis" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0043565 "sequence-specific
            DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0005634
            GO:GO:0030216 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0033081 GO:GO:0050673
            GO:GO:0002260 ProteinModelPortal:E2R649 Ensembl:ENSCAFT00000029700
            Uniprot:E2R649
        Length = 644

 Score = 183 (69.5 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
 Identities = 58/179 (32%), Positives = 81/179 (45%)

Query:     5 SLEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQAL 64
             S  P     PG  S   P   SSH P   Q          H     KP ++Y+ LI  AL
Sbjct:   226 SQPPFHQYSPGGGSYPIPYLGSSHYPY--QRIAPQASTDGHQPLFPKPIYSYSILIFMAL 283

Query:    65 KEKH--QLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA----G 118
             K      L VS IY +++E FPY+    D WKNSVRHNLS+N  F K V+   G+    G
Sbjct:   284 KNSKTGSLPVSEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEK-VENKSGSSSRKG 342

Query:   119 HLW--NLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMP 175
              LW  N + ++ +++  +  WK+       +S+   E  D   G+   +  +P M   P
Sbjct:   343 CLWALNPAKIDKMQEELQK-WKRKDPIAVRKSMAKPEELDSLIGEKREKLGSPLMACPP 400

 Score = 37 (18.1 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query:   166 TPAPSMETMPQPQP 179
             T +P+  +MP P P
Sbjct:   562 TSSPTSSSMPPPPP 575


>UNIPROTKB|Q5M7N6 [details] [associations]
            symbol:foxj1 "Forkhead box protein J1" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0001947 "heart looping"
            evidence=IBA] [GO:0002635 "negative regulation of germinal center
            formation" evidence=IBA] [GO:0002897 "positive regulation of
            central B cell tolerance induction" evidence=IBA] [GO:0002924
            "negative regulation of humoral immune response mediated by
            circulating immunoglobulin" evidence=IBA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0019904 "protein domain specific binding" evidence=IBA]
            [GO:0030036 "actin cytoskeleton organization" evidence=IBA]
            [GO:0030324 "lung development" evidence=IBA] [GO:0030855
            "epithelial cell differentiation" evidence=IBA] [GO:0032088
            "negative regulation of NF-kappaB transcription factor activity"
            evidence=IBA] [GO:0032862 "activation of Rho GTPase activity"
            evidence=IBA] [GO:0033085 "negative regulation of T cell
            differentiation in thymus" evidence=IBA] [GO:0035089 "establishment
            of apical/basal cell polarity" evidence=IBA] [GO:0042130 "negative
            regulation of T cell proliferation" evidence=IBA] [GO:0042384
            "cilium assembly" evidence=IBA] [GO:0045409 "negative regulation of
            interleukin-6 biosynthetic process" evidence=IBA] [GO:0050869
            "negative regulation of B cell activation" evidence=IBA]
            [GO:0050900 "leukocyte migration" evidence=IBA] [GO:0060972
            "left/right pattern formation" evidence=IBA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339 GO:GO:0019904
            GO:GO:0042130 GO:GO:0030036 GO:GO:0030324 GO:GO:0050900
            GO:GO:0043565 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0003690 GO:GO:0042384
            GO:GO:0001947 GO:GO:0032088 GO:GO:0008134 GO:GO:0030855
            GO:GO:0033085 GO:GO:0032862 eggNOG:COG5025 GO:GO:0060972
            GO:GO:0002924 HSSP:Q01167 CTD:2302 HOGENOM:HOG000112631
            HOVERGEN:HBG056832 KO:K09402 OrthoDB:EOG40CHH5 GO:GO:0035089
            GO:GO:0050869 GO:GO:0002635 GO:GO:0045409 GO:GO:0002897
            EMBL:CR759983 EMBL:BC088533 RefSeq:NP_001011367.1 UniGene:Str.533
            ProteinModelPortal:Q5M7N6 SMR:Q5M7N6 STRING:Q5M7N6 GeneID:496834
            KEGG:xtr:496834 Xenbase:XB-GENE-853648 InParanoid:Q5M7N6
            Uniprot:Q5M7N6
        Length = 438

 Score = 177 (67.4 bits), Expect = 7.0e-11, P = 7.0e-11
 Identities = 38/98 (38%), Positives = 56/98 (57%)

Query:    49 HRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A++  +K ++T+S IY+WI++ F Y+   D  W+NS+RHNLS+N  
Sbjct:   121 HVKPPYSYATLICMAMQASKKTKITLSAIYKWITDNFCYFRHADPTWQNSIRHNLSLNKC 180

Query:   107 FRK--GVKASQGAGHLWNLSDMEPVEDASKSNWKKNRL 142
             F K    K   G G  W + D +  +       KK RL
Sbjct:   181 FIKVPREKDEPGKGGFWKI-DPQYADRLMNGAMKKRRL 217


>UNIPROTKB|Q708W1 [details] [associations]
            symbol:foxj1-b "Forkhead box protein J1-B" species:8355
            "Xenopus laevis" [GO:0003677 "DNA binding" evidence=NAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0003677 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            HSSP:Q01167 HOVERGEN:HBG056832 KO:K09402 EMBL:AJ609391
            RefSeq:NP_001083644.1 UniGene:Xl.1396 ProteinModelPortal:Q708W1
            SMR:Q708W1 GeneID:399038 KEGG:xla:399038 CTD:399038
            Xenbase:XB-GENE-856300 Uniprot:Q708W1
        Length = 439

 Score = 177 (67.4 bits), Expect = 7.0e-11, P = 7.0e-11
 Identities = 38/98 (38%), Positives = 56/98 (57%)

Query:    49 HRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A++  +K ++T+S IY+WI++ F Y+   D  W+NS+RHNLS+N  
Sbjct:   122 HVKPPYSYATLICMAMQASKKTKITLSAIYKWITDNFCYFRHADPTWQNSIRHNLSLNKC 181

Query:   107 FRK--GVKASQGAGHLWNLSDMEPVEDASKSNWKKNRL 142
             F K    K   G G  W + D +  +       KK RL
Sbjct:   182 FIKVPREKDEPGKGGFWKI-DPQYADRLMNGAMKKRRL 218


>UNIPROTKB|Q708W2 [details] [associations]
            symbol:foxj1-a "Forkhead box protein J1-A" species:8355
            "Xenopus laevis" [GO:0003677 "DNA binding" evidence=NAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0003677 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            HSSP:Q01167 HOVERGEN:HBG056832 KO:K09402 EMBL:AJ609390
            EMBL:BC077846 RefSeq:NP_001083646.1 UniGene:Xl.34501
            ProteinModelPortal:Q708W2 SMR:Q708W2 GeneID:399039 KEGG:xla:399039
            CTD:399039 Xenbase:XB-GENE-6254646 Uniprot:Q708W2
        Length = 439

 Score = 177 (67.4 bits), Expect = 7.0e-11, P = 7.0e-11
 Identities = 38/98 (38%), Positives = 55/98 (56%)

Query:    49 HRKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPH 106
             H KPP++Y  LI  A++  +K ++T+S IY WI++ F Y+   D  W+NS+RHNLS+N  
Sbjct:   122 HVKPPYSYATLICMAMQASKKTKITLSAIYNWITDNFCYFRHADPTWQNSIRHNLSLNKC 181

Query:   107 FRK--GVKASQGAGHLWNLSDMEPVEDASKSNWKKNRL 142
             F K    K   G G  W + D +  +       KK RL
Sbjct:   182 FMKVPREKDEPGKGGFWKI-DPQYADRLINGAMKKRRL 218


>UNIPROTKB|Q7RY86 [details] [associations]
            symbol:NCU00019 "Putative uncharacterized protein"
            species:367110 "Neurospora crassa OR74A" [GO:0000790 "nuclear
            chromatin" evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA]
            InterPro:IPR000253 InterPro:IPR001766 InterPro:IPR008984
            InterPro:IPR018122 Pfam:PF00250 Pfam:PF00498 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50006 PROSITE:PS50039
            SMART:SM00240 SMART:SM00339 GO:GO:0043565 Gene3D:1.10.10.10
            InterPro:IPR011991 Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0005667
            GO:GO:0003705 GO:GO:0000790 GO:GO:0003690 GO:GO:0008134
            GO:GO:0051090 eggNOG:COG5025 OrthoDB:EOG4R7ZKG HSSP:Q01167
            EMBL:AABX02000001 HOGENOM:HOG000198105 RefSeq:XP_957006.1
            UniGene:Ncr.15895 ProteinModelPortal:Q7RY86 SMR:Q7RY86
            EnsemblFungi:EFNCRT00000000388 GeneID:3873144 KEGG:ncr:NCU00019
            Uniprot:Q7RY86
        Length = 688

 Score = 180 (68.4 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 51/148 (34%), Positives = 76/148 (51%)

Query:    49 HRKPPFTYTELIEQAL--KEKHQLTVSGIYQWISERFPYY-NQNDDRWKNSVRHNLSINP 105
             H KP F+Y ++I QA+   E  +L +SGIYQ+I  R+ YY +Q    W+NS+RHNLS+N 
Sbjct:   328 HIKPQFSYAQMITQAIVNTEDQKLNLSGIYQFIMNRYSYYRHQPAGGWQNSIRHNLSLNK 387

Query:   106 HFRKGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQN- 162
              F K  +++   G G  W +   +  ED  ++ ++  R      S   S  G +Y  Q  
Sbjct:   388 SFEKVARSTDEPGKGMKWQIV-ADAREDMIRNAYRGGRGGHRGTSNPASPSGLNYITQGP 446

Query:   163 ---STETPAPSMETM------PQPQPQP 181
                + + PA S +        PQPQP P
Sbjct:   447 KDMAAKEPASSRKRKISPSDSPQPQPHP 474


>UNIPROTKB|Q4SM19 [details] [associations]
            symbol:FOXB1 "Uncharacterized protein" species:99883
            "Tetraodon nigroviridis" [GO:0001756 "somitogenesis" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0007412 "axon target
            recognition" evidence=ISS] [GO:0008542 "visual learning"
            evidence=ISS] [GO:0021767 "mammillary body development"
            evidence=ISS] [GO:0021855 "hypothalamus cell migration"
            evidence=ISS] [GO:0022029 "telencephalon cell migration"
            evidence=ISS] [GO:0030901 "midbrain development" evidence=ISS]
            [GO:0033504 "floor plate development" evidence=ISS] [GO:0043524
            "negative regulation of neuron apoptotic process" evidence=ISS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            [GO:0061374 "mammillothalamic axonal tract development"
            evidence=ISS] [GO:0061379 "inferior colliculus development"
            evidence=ISS] [GO:0061381 "cell migration in diencephalon"
            evidence=ISS] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0043565 GO:GO:0008542
            GO:GO:0043524 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006351 GO:GO:0001756 GO:GO:0007412 GO:GO:0033504
            GO:GO:0022029 GeneTree:ENSGT00700000104135 OMA:AREYKVP
            OrthoDB:EOG40GCRF GO:GO:0061381 GO:GO:0021855 GO:GO:0061379
            GO:GO:0061374 HOVERGEN:HBG051642 EMBL:CAAE01014555
            Ensembl:ENSTNIT00000011410 Uniprot:Q4SM19
        Length = 313

 Score = 163 (62.4 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
 Identities = 44/117 (37%), Positives = 63/117 (53%)

Query:    50 RKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  L   A++   +  L +S IY++I +RFPYY +N  RW+NS+RHNLS N  F
Sbjct:    12 QKPPYSYISLTAMAIQSCPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRHNLSFNDCF 71

Query:   108 RKGVKASQ--GAGHLWNL----SDMEPVEDASKSNWKKNRLKTY--LESLQPSEWGD 156
              K  +     G G  W L     DM   E+ S    +K R K    ++ L PS+  D
Sbjct:    72 IKIPRRPDQPGKGSFWALHPGCGDM--FENGSFLRRRK-RFKVLGAVDHLAPSKPSD 125

 Score = 47 (21.6 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
 Identities = 15/55 (27%), Positives = 19/55 (34%)

Query:   164 TETPAPSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYEECKDVLYIQS 218
             T T  P    +P   P  L+    +  P  P    SQ S   P E       +QS
Sbjct:   255 TPTSMPGFSALPPHIPAFLSNSPQSLSPTSPQTATSQSSPATPSETLTSPSTLQS 309


>UNIPROTKB|J9P9K1 [details] [associations]
            symbol:FOXD3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00700000104135 EMBL:AAEX03003765 EMBL:AAEX03003766
            Ensembl:ENSCAFT00000048793 Uniprot:J9P9K1
        Length = 370

 Score = 175 (66.7 bits), Expect = 7.8e-11, P = 7.8e-11
 Identities = 42/109 (38%), Positives = 60/109 (55%)

Query:    43 PSHAKTHR-KPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRH 99
             PS  K    KPP++Y  LI  A+ +  Q  LT+SGI ++IS RFPYY +    W+NS+RH
Sbjct:   116 PSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRH 175

Query:   100 NLSINPHFRKGVK--ASQGAGHLWNLSDM-EPVEDASKSNWKKNRLKTY 145
             NLS+N  F K  +   + G G+ W L    E + D      ++ R K +
Sbjct:   176 NLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRH 224


>ZFIN|ZDB-GENE-980526-143 [details] [associations]
            symbol:foxd3 "forkhead box D3" species:7955 "Danio
            rerio" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA;IDA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0009790 "embryo
            development" evidence=IBA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0007389 "pattern specification process" evidence=IBA]
            [GO:0003690 "double-stranded DNA binding" evidence=IBA] [GO:0001822
            "kidney development" evidence=IBA] [GO:0048846 "axon extension
            involved in axon guidance" evidence=IBA] [GO:0001658 "branching
            involved in ureteric bud morphogenesis" evidence=IBA] [GO:0008301
            "DNA binding, bending" evidence=IBA] [GO:0051090 "regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0030318 "melanocyte differentiation"
            evidence=IGI] [GO:0010629 "negative regulation of gene expression"
            evidence=IGI;IMP] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=IDA] [GO:0060351 "cartilage
            development involved in endochondral bone morphogenesis"
            evidence=IMP] [GO:0014032 "neural crest cell development"
            evidence=IGI;IMP] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA;IDA] [GO:0001071 "nucleic acid binding transcription
            factor activity" evidence=IDA] [GO:0051216 "cartilage development"
            evidence=IMP] [GO:0048937 "lateral line nerve glial cell
            development" evidence=IMP] [GO:0048484 "enteric nervous system
            development" evidence=IMP] [GO:0050935 "iridophore differentiation"
            evidence=IMP] [GO:0007422 "peripheral nervous system development"
            evidence=IMP] [GO:0050931 "pigment cell differentiation"
            evidence=IGI;IMP] [GO:0048485 "sympathetic nervous system
            development" evidence=IMP] [GO:0001755 "neural crest cell
            migration" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-980526-143 GO:GO:0045892 GO:GO:0001755 GO:GO:0043565
            GO:GO:0045944 GO:GO:0007422 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0009790
            GO:GO:0001822 GO:GO:0003690 GO:GO:0008134 GO:GO:0007389
            GO:GO:0001658 GO:GO:0048485 GO:GO:0030318 GO:GO:0048484
            GO:GO:0051090 GO:GO:0048846 GO:GO:0060351 GO:GO:0048937
            HOVERGEN:HBG051641 GO:GO:0050935 EMBL:BC095603 IPI:IPI00512255
            UniGene:Dr.75816 ProteinModelPortal:Q502Q4 SMR:Q502Q4
            InParanoid:Q502Q4 ArrayExpress:Q502Q4 Uniprot:Q502Q4
        Length = 371

 Score = 175 (66.7 bits), Expect = 7.8e-11, P = 7.8e-11
 Identities = 44/132 (33%), Positives = 68/132 (51%)

Query:    22 PCQTSSHKPEPSQSEVEDRCCPSHAKTHR---KPPFTYTELIEQALKEKHQ--LTVSGIY 76
             PC++++       ++ E    P   K      KPP++Y  LI  A+ +  Q  LT+SGI 
Sbjct:    65 PCESNADGETKGDAQ-ESSTGPMQNKPKSSLVKPPYSYIALITMAILQSPQKKLTLSGIC 123

Query:    77 QWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNLSDM-EPVEDAS 133
             ++IS RFPYY +    W+NS+RHNLS+N  F K  +   + G G+ W L    E + D  
Sbjct:   124 EFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNG 183

Query:   134 KSNWKKNRLKTY 145
                 ++ R K +
Sbjct:   184 SFLRRRKRFKRH 195


>UNIPROTKB|Q9PVY9 [details] [associations]
            symbol:foxc2-a "Forkhead box protein C2-A" species:8355
            "Xenopus laevis" [GO:0003677 "DNA binding" evidence=NAS]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] [GO:0007498 "mesoderm development" evidence=IEP]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0007275 GO:GO:0005634 GO:GO:0045893
            GO:GO:0007498 GO:GO:0003677 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 KO:K09396
            HSSP:Q99958 HOVERGEN:HBG051640 EMBL:AJ249224 EMBL:BC111544
            PIR:E56556 RefSeq:NP_001089960.2 UniGene:Xl.20334
            ProteinModelPortal:Q9PVY9 SMR:Q9PVY9 GeneID:735030 KEGG:xla:735030
            CTD:735030 Xenbase:XB-GENE-865122 Uniprot:Q9PVY9
        Length = 465

 Score = 177 (67.4 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 35/85 (41%), Positives = 54/85 (63%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P+  K   KPP++Y  LI  A++     ++T++GIYQ+I +RFP+Y +N   W+NS+RHN
Sbjct:    64 PTAPKDLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHN 123

Query:   101 LSINPHFRKGVKASQ--GAGHLWNL 123
             LS+N  F K  +  +  G G  W+L
Sbjct:   124 LSLNECFVKVPRDDKKPGKGSYWSL 148


>ZFIN|ZDB-GENE-040426-2094 [details] [associations]
            symbol:foxd1 "forkhead box D1" species:7955 "Danio
            rerio" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0051090
            "regulation of sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0090184 "positive regulation of kidney
            development" evidence=IBA] [GO:0009790 "embryo development"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0048485 "sympathetic nervous system development"
            evidence=IBA] [GO:0008301 "DNA binding, bending" evidence=IBA]
            [GO:0060678 "dichotomous subdivision of terminal units involved in
            ureteric bud branching" evidence=IBA] [GO:0030513 "positive
            regulation of BMP signaling pathway" evidence=IBA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IBA] [GO:0050935 "iridophore differentiation"
            evidence=IBA] [GO:0001755 "neural crest cell migration"
            evidence=IBA] [GO:0030318 "melanocyte differentiation"
            evidence=IBA] [GO:0008134 "transcription factor binding"
            evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0048846 "axon extension involved in axon
            guidance" evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0007422 "peripheral nervous system development"
            evidence=IBA] [GO:0051216 "cartilage development" evidence=IBA]
            [GO:0048937 "lateral line nerve glial cell development"
            evidence=IBA] [GO:0048484 "enteric nervous system development"
            evidence=IBA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 ZFIN:ZDB-GENE-040426-2094
            GO:GO:0001755 GO:GO:0043565 GO:GO:0045944 GO:GO:0007422
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705
            GO:GO:0008301 GO:GO:0009790 GO:GO:0003690 GO:GO:0030513
            GO:GO:0051216 GO:GO:0008134 GO:GO:0007389 GO:GO:0048485
            GO:GO:0030318 GO:GO:0048484 GO:GO:0051090 GO:GO:0090184
            GO:GO:0048846 KO:K09397 GO:GO:0048937 HOVERGEN:HBG051641
            GO:GO:0060678 GO:GO:0050935 HSSP:Q01167 EMBL:BC067138
            IPI:IPI00501340 RefSeq:NP_998078.1 UniGene:Dr.82970
            ProteinModelPortal:Q6NXD6 SMR:Q6NXD6 GeneID:405849 KEGG:dre:405849
            CTD:405849 InParanoid:Q6NXD6 NextBio:20817811 Uniprot:Q6NXD6
        Length = 343

 Score = 174 (66.3 bits), Expect = 8.2e-11, P = 8.2e-11
 Identities = 42/116 (36%), Positives = 61/116 (52%)

Query:    30 PEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYN 87
             P    S   D   P+   T  KPP++Y  LI  A+ +  K +LT+S I  +IS RFPYY 
Sbjct:    53 PGVDASPARDPYKPASKNTLVKPPYSYIALITMAILQSPKKRLTLSEICDFISNRFPYYR 112

Query:    88 QNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNLSDMEPVEDASKSNWKKNR 141
             +    W+NS+RHNLS+N  F K  +   + G G+ W L D E  +     ++ + R
Sbjct:   113 EKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTL-DPESADMFDNGSFLRRR 167


>UNIPROTKB|B7ZBM3 [details] [associations]
            symbol:FOXP4 "Forkhead box protein P4" species:9606 "Homo
            sapiens" [GO:0003700 "sequence-specific DNA binding transcription
            factor activity" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR015880 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 SMART:SM00355 GO:GO:0043565 GO:GO:0008270
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
            HOGENOM:HOG000092089 HOVERGEN:HBG051657 EMBL:AL139331
            UniGene:Hs.131436 HGNC:HGNC:20842 ChiTaRS:FOXP4 IPI:IPI00915788
            SMR:B7ZBM3 STRING:B7ZBM3 Ensembl:ENST00000409208 Uniprot:B7ZBM3
        Length = 668

 Score = 179 (68.1 bits), Expect = 8.9e-11, P = 8.9e-11
 Identities = 59/212 (27%), Positives = 90/212 (42%)

Query:    11 LKPPGQFSPMEPCQTSSHKPEPSQSEVEDR-CCPSH---AKTHR-------KPPFTYTEL 59
             L+PPG  S       S H   P++    D+ C P     A+ H        +PPFTY  L
Sbjct:   410 LRPPGLGS------ASLHGGGPARRRSSDKFCSPISSELAQNHEFYKNADVRPPFTYASL 463

Query:    60 IEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA 117
             I QA+ E    QLT++ IY W +  F Y+ +N   WKN+VRHNLS++  F   V+     
Sbjct:   464 IRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCF---VRVENVK 520

Query:   118 GHLWNLSDME-PVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQ 176
             G +W + + E       K       +K  +  L        Y    + E+  P + +   
Sbjct:   521 GAVWTVDEREYQKRRPPKMTGSPTLVKNMISGLSYGALNASYQAALA-ESSFPLLNSPGM 579

Query:   177 PQPQPLNTM-SLAHDPL-QPFEVYSQESKTFP 206
               P   +++  L+HD +  P E       + P
Sbjct:   580 LNPGSASSLLPLSHDDVGAPVEPLPSNGSSSP 611


>UNIPROTKB|E1B7H0 [details] [associations]
            symbol:FOXB1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0061381 "cell migration in diencephalon" evidence=ISS]
            [GO:0061379 "inferior colliculus development" evidence=ISS]
            [GO:0061377 "mammary gland lobule development" evidence=ISS]
            [GO:0061374 "mammillothalamic axonal tract development"
            evidence=ISS] [GO:0021767 "mammillary body development"
            evidence=ISS] [GO:0008542 "visual learning" evidence=ISS]
            [GO:0022029 "telencephalon cell migration" evidence=ISS]
            [GO:0001756 "somitogenesis" evidence=ISS] [GO:0033504 "floor plate
            development" evidence=ISS] [GO:0021855 "hypothalamus cell
            migration" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            [GO:0061030 "epithelial cell differentiation involved in mammary
            gland alveolus development" evidence=ISS] [GO:0043524 "negative
            regulation of neuron apoptotic process" evidence=ISS] [GO:0030901
            "midbrain development" evidence=ISS] [GO:0007595 "lactation"
            evidence=ISS] [GO:0007412 "axon target recognition" evidence=ISS]
            [GO:0021794 "thalamus development" evidence=IEA] [GO:0021510
            "spinal cord development" evidence=IEA] [GO:0001655 "urogenital
            system development" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0008542 GO:GO:0043524
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0001756 GO:GO:0001655 GO:GO:0021510 GO:GO:0007595
            GO:GO:0007412 GO:GO:0033504 GO:GO:0021794 GO:GO:0022029
            GeneTree:ENSGT00700000104135 CTD:27023 KO:K09395 OMA:AREYKVP
            GO:GO:0061381 GO:GO:0061030 GO:GO:0021855 GO:GO:0061379
            GO:GO:0061374 EMBL:DAAA02028794 IPI:IPI00686566
            RefSeq:XP_002690896.1 RefSeq:XP_585450.1 Ensembl:ENSBTAT00000025445
            GeneID:539181 KEGG:bta:539181 NextBio:20877831 Uniprot:E1B7H0
        Length = 325

 Score = 164 (62.8 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 43/114 (37%), Positives = 62/114 (54%)

Query:    50 RKPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  L   A++   +  L +S IY++I +RFPYY +N  RW+NS+RHNLS N  F
Sbjct:    12 QKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRHNLSFNDCF 71

Query:   108 RKGVKASQ--GAGHLWNL--SDMEPVEDASKSNWKKNRLKTYL-ESLQPSEWGD 156
              K  +     G G  W L  S  +  E+ S    +K R K    + L PS+  D
Sbjct:    72 IKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK-RFKVLKSDHLAPSKPAD 124

 Score = 46 (21.3 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query:   166 TPA--PSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYE 208
             TPA  P++  +P P P  L+    +  P       SQ S   P E
Sbjct:   266 TPAAVPALPALPAPIPTLLSNSPPSLSPTSSQTATSQSSPATPSE 310


>UNIPROTKB|E2R277 [details] [associations]
            symbol:FOXB1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250
            PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            SMART:SM00339 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00700000104135 CTD:27023 KO:K09395 OMA:AREYKVP
            EMBL:AAEX03016181 RefSeq:XP_003433969.1 ProteinModelPortal:E2R277
            Ensembl:ENSCAFT00000039029 GeneID:100685913 KEGG:cfa:100685913
            Uniprot:E2R277
        Length = 325

 Score = 164 (62.8 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 43/114 (37%), Positives = 62/114 (54%)

Query:    50 RKPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  L   A++   +  L +S IY++I +RFPYY +N  RW+NS+RHNLS N  F
Sbjct:    12 QKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRHNLSFNDCF 71

Query:   108 RKGVKASQ--GAGHLWNL--SDMEPVEDASKSNWKKNRLKTYL-ESLQPSEWGD 156
              K  +     G G  W L  S  +  E+ S    +K R K    + L PS+  D
Sbjct:    72 IKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK-RFKVLKSDHLAPSKPAD 124

 Score = 46 (21.3 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query:   166 TPA--PSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYE 208
             TPA  P++  +P P P  L+    +  P       SQ S   P E
Sbjct:   266 TPAAVPALPALPAPIPTLLSNSPPSLSPTSSQTATSQSSPATPSE 310


>UNIPROTKB|Q99853 [details] [associations]
            symbol:FOXB1 "Forkhead box protein B1" species:9606 "Homo
            sapiens" [GO:0001655 "urogenital system development" evidence=IEA]
            [GO:0021510 "spinal cord development" evidence=IEA] [GO:0021794
            "thalamus development" evidence=IEA] [GO:0003690 "double-stranded
            DNA binding" evidence=IBA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0007389 "pattern specification process"
            evidence=IBA] [GO:0007420 "brain development" evidence=IBA]
            [GO:0008134 "transcription factor binding" evidence=IBA]
            [GO:0008301 "DNA binding, bending" evidence=IBA] [GO:0009790
            "embryo development" evidence=IBA] [GO:0009888 "tissue development"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0007412
            "axon target recognition" evidence=ISS] [GO:0007595 "lactation"
            evidence=ISS] [GO:0030901 "midbrain development" evidence=ISS]
            [GO:0043524 "negative regulation of neuron apoptotic process"
            evidence=ISS] [GO:0061030 "epithelial cell differentiation involved
            in mammary gland alveolus development" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0021855 "hypothalamus cell migration"
            evidence=ISS] [GO:0033504 "floor plate development" evidence=ISS]
            [GO:0001756 "somitogenesis" evidence=ISS] [GO:0022029
            "telencephalon cell migration" evidence=ISS] [GO:0008542 "visual
            learning" evidence=ISS] [GO:0021767 "mammillary body development"
            evidence=ISS] [GO:0061374 "mammillothalamic axonal tract
            development" evidence=ISS] [GO:0061377 "mammary gland lobule
            development" evidence=ISS] [GO:0061379 "inferior colliculus
            development" evidence=ISS] [GO:0061381 "cell migration in
            diencephalon" evidence=ISS] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 EMBL:AF071554 GO:GO:0043565
            GO:GO:0008542 GO:GO:0043524 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0005667 GO:GO:0003705 GO:GO:0008301 GO:GO:0001756
            GO:GO:0001655 GO:GO:0003690 GO:GO:0008134 GO:GO:0021510
            EMBL:CH471082 GO:GO:0007595 GO:GO:0051090 GO:GO:0007412
            GO:GO:0033504 GO:GO:0021794 eggNOG:COG5025 GO:GO:0022029
            EMBL:AF055080 EMBL:AK290944 EMBL:BC113710 EMBL:U87393
            IPI:IPI00018495 RefSeq:NP_036314.2 UniGene:Hs.734475
            ProteinModelPortal:Q99853 SMR:Q99853 IntAct:Q99853 STRING:Q99853
            PhosphoSite:Q99853 DMDM:215274160 PRIDE:Q99853
            Ensembl:ENST00000396057 GeneID:27023 KEGG:hsa:27023 UCSC:uc002agj.1
            CTD:27023 GeneCards:GC15P060296 HGNC:HGNC:3799 neXtProt:NX_Q99853
            PharmGKB:PA28216 HOGENOM:HOG000007545 HOVERGEN:HBG102104
            InParanoid:Q99853 KO:K09395 OMA:AREYKVP OrthoDB:EOG40GCRF
            PhylomeDB:Q99853 GenomeRNAi:27023 NextBio:49554 Bgee:Q99853
            CleanEx:HS_FOXB1 Genevestigator:Q99853 GermOnline:ENSG00000171956
            GO:GO:0061381 GO:GO:0061030 GO:GO:0021855 GO:GO:0061379
            GO:GO:0061374 Uniprot:Q99853
        Length = 325

 Score = 164 (62.8 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 43/114 (37%), Positives = 62/114 (54%)

Query:    50 RKPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  L   A++   +  L +S IY++I +RFPYY +N  RW+NS+RHNLS N  F
Sbjct:    12 QKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRHNLSFNDCF 71

Query:   108 RKGVKASQ--GAGHLWNL--SDMEPVEDASKSNWKKNRLKTYL-ESLQPSEWGD 156
              K  +     G G  W L  S  +  E+ S    +K R K    + L PS+  D
Sbjct:    72 IKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK-RFKVLKSDHLAPSKPAD 124

 Score = 46 (21.3 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query:   166 TPA--PSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYE 208
             TPA  P++  +P P P  L+    +  P       SQ S   P E
Sbjct:   266 TPAAVPALPALPAPIPTLLSNSPPSLSPTSSQTATSQSSPATPSE 310


>UNIPROTKB|D2HLR1 [details] [associations]
            symbol:FOXB1 "Uncharacterized protein" species:9646
            "Ailuropoda melanoleuca" [GO:0001756 "somitogenesis" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0007412 "axon target
            recognition" evidence=ISS] [GO:0007595 "lactation" evidence=ISS]
            [GO:0008542 "visual learning" evidence=ISS] [GO:0021767 "mammillary
            body development" evidence=ISS] [GO:0021855 "hypothalamus cell
            migration" evidence=ISS] [GO:0022029 "telencephalon cell migration"
            evidence=ISS] [GO:0030901 "midbrain development" evidence=ISS]
            [GO:0033504 "floor plate development" evidence=ISS] [GO:0043524
            "negative regulation of neuron apoptotic process" evidence=ISS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            [GO:0061030 "epithelial cell differentiation involved in mammary
            gland alveolus development" evidence=ISS] [GO:0061374
            "mammillothalamic axonal tract development" evidence=ISS]
            [GO:0061377 "mammary gland lobule development" evidence=ISS]
            [GO:0061379 "inferior colliculus development" evidence=ISS]
            [GO:0061381 "cell migration in diencephalon" evidence=ISS]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0008542 GO:GO:0043524
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0001756 GO:GO:0001655 GO:GO:0021510 GO:GO:0007595
            GO:GO:0007412 GO:GO:0033504 GO:GO:0021794 GO:GO:0022029
            GeneTree:ENSGT00700000104135 HOGENOM:HOG000007545 KO:K09395
            OMA:AREYKVP GO:GO:0061381 GO:GO:0061030 GO:GO:0021855 GO:GO:0061379
            GO:GO:0061374 EMBL:ACTA01179549 EMBL:GL193015 RefSeq:XP_002923327.1
            ProteinModelPortal:D2HLR1 Ensembl:ENSAMET00000021309
            GeneID:100475733 KEGG:aml:100475733 Uniprot:D2HLR1
        Length = 325

 Score = 164 (62.8 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 43/114 (37%), Positives = 62/114 (54%)

Query:    50 RKPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  L   A++   +  L +S IY++I +RFPYY +N  RW+NS+RHNLS N  F
Sbjct:    12 QKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRHNLSFNDCF 71

Query:   108 RKGVKASQ--GAGHLWNL--SDMEPVEDASKSNWKKNRLKTYL-ESLQPSEWGD 156
              K  +     G G  W L  S  +  E+ S    +K R K    + L PS+  D
Sbjct:    72 IKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK-RFKVLKSDHLAPSKPAD 124

 Score = 46 (21.3 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query:   166 TPA--PSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYE 208
             TPA  P++  +P P P  L+    +  P       SQ S   P E
Sbjct:   266 TPAAVPALPALPAPIPTLLSNSPPSLSPTSSQTATSQSSPATPSE 310


>MGI|MGI:1927549 [details] [associations]
            symbol:Foxb1 "forkhead box B1" species:10090 "Mus musculus"
            [GO:0000122 "negative regulation of transcription from RNA
            polymerase II promoter" evidence=IBA] [GO:0001756 "somitogenesis"
            evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0007412 "axon target recognition" evidence=IMP] [GO:0007595
            "lactation" evidence=IMP] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0008542 "visual learning" evidence=IMP]
            [GO:0021767 "mammillary body development" evidence=IMP] [GO:0021855
            "hypothalamus cell migration" evidence=IMP] [GO:0022029
            "telencephalon cell migration" evidence=IMP] [GO:0030901 "midbrain
            development" evidence=IMP] [GO:0033504 "floor plate development"
            evidence=IMP] [GO:0043524 "negative regulation of neuron apoptotic
            process" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0061030
            "epithelial cell differentiation involved in mammary gland alveolus
            development" evidence=IMP] [GO:0061374 "mammillothalamic axonal
            tract development" evidence=IMP] [GO:0061377 "mammary gland lobule
            development" evidence=IMP] [GO:0061379 "inferior colliculus
            development" evidence=IMP] [GO:0061381 "cell migration in
            diencephalon" evidence=IMP] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 EMBL:U90538 MGI:MGI:1927549
            GO:GO:0043565 GO:GO:0008542 GO:GO:0043524 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005667 GO:GO:0003705 GO:GO:0000122
            GO:GO:0008301 GO:GO:0001756 GO:GO:0001655 GO:GO:0003690
            GO:GO:0008134 GO:GO:0021510 GO:GO:0007595 GO:GO:0051090
            GO:GO:0007412 GO:GO:0033504 GO:GO:0021794 eggNOG:COG5025
            GO:GO:0022029 GeneTree:ENSGT00700000104135 CTD:27023
            HOGENOM:HOG000007545 HOVERGEN:HBG102104 KO:K09395 OMA:AREYKVP
            OrthoDB:EOG40GCRF GO:GO:0061381 GO:GO:0061030 GO:GO:0021855
            GO:GO:0061379 GO:GO:0061374 EMBL:X92592 EMBL:BC111908 EMBL:U04198
            EMBL:X71943 IPI:IPI00138059 PIR:E47746 RefSeq:NP_071773.2
            UniGene:Mm.440890 ProteinModelPortal:Q64732 SMR:Q64732
            PhosphoSite:Q64732 PRIDE:Q64732 Ensembl:ENSMUST00000071281
            GeneID:64290 KEGG:mmu:64290 UCSC:uc012gwj.1 InParanoid:Q2M2M4
            NextBio:319993 Bgee:Q64732 CleanEx:MM_FOXB1 Genevestigator:Q64732
            GermOnline:ENSMUSG00000059246 Uniprot:Q64732
        Length = 325

 Score = 164 (62.8 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 43/114 (37%), Positives = 62/114 (54%)

Query:    50 RKPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  L   A++   +  L +S IY++I +RFPYY +N  RW+NS+RHNLS N  F
Sbjct:    12 QKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRHNLSFNDCF 71

Query:   108 RKGVKASQ--GAGHLWNL--SDMEPVEDASKSNWKKNRLKTYL-ESLQPSEWGD 156
              K  +     G G  W L  S  +  E+ S    +K R K    + L PS+  D
Sbjct:    72 IKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRRK-RFKVLKSDHLAPSKPAD 124

 Score = 46 (21.3 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query:   166 TPA--PSMETMPQPQPQPLNTMSLAHDPLQPFEVYSQESKTFPYE 208
             TPA  P++  +P P P  L+    +  P       SQ S   P E
Sbjct:   266 TPAAVPALPALPAPIPTLLSNSPPSLSPTSSQTATSQSSPATPSE 310


>UNIPROTKB|Q8IVH2 [details] [associations]
            symbol:FOXP4 "Forkhead box protein P4" species:9606 "Homo
            sapiens" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=IBA] [GO:0003690 "double-stranded DNA binding"
            evidence=IBA] [GO:0003705 "RNA polymerase II distal enhancer
            sequence-specific DNA binding transcription factor activity"
            evidence=IBA] [GO:0005667 "transcription factor complex"
            evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA] [GO:0007389
            "pattern specification process" evidence=IBA] [GO:0007507 "heart
            development" evidence=IBA] [GO:0008134 "transcription factor
            binding" evidence=IBA] [GO:0008301 "DNA binding, bending"
            evidence=IBA] [GO:0009888 "tissue development" evidence=IBA]
            [GO:0042803 "protein homodimerization activity" evidence=IBA]
            [GO:0046982 "protein heterodimerization activity" evidence=IBA]
            [GO:0048617 "embryonic foregut morphogenesis" evidence=IBA]
            [GO:0051090 "regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IBA] InterPro:IPR001766
            InterPro:IPR015880 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00028 PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039
            PROSITE:PS50157 SMART:SM00339 SMART:SM00355 GO:GO:0005737
            GO:GO:0042803 GO:GO:0007507 EMBL:CH471081 GO:GO:0046872
            GO:GO:0043565 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003682 GO:GO:0005667 GO:GO:0003705 GO:GO:0008301
            GO:GO:0003690 GO:GO:0046982 GO:GO:0008134 GO:GO:0007389
            GO:GO:0051090 GO:GO:0048617 eggNOG:COG5025 GO:GO:0009888
            HOGENOM:HOG000092089 HOVERGEN:HBG051657 KO:K09409 EMBL:AB080747
            EMBL:AL139331 EMBL:BC013030 EMBL:BC040962 EMBL:BC052803
            IPI:IPI00395554 IPI:IPI00554470 IPI:IPI00554643
            RefSeq:NP_001012426.1 RefSeq:NP_001012427.1 RefSeq:NP_612466.1
            UniGene:Hs.131436 ProteinModelPortal:Q8IVH2 SMR:Q8IVH2
            DIP:DIP-59301N IntAct:Q8IVH2 STRING:Q8IVH2 PhosphoSite:Q8IVH2
            DMDM:46395887 PaxDb:Q8IVH2 PRIDE:Q8IVH2 DNASU:116113
            Ensembl:ENST00000307972 Ensembl:ENST00000373057
            Ensembl:ENST00000373060 Ensembl:ENST00000373063 GeneID:116113
            KEGG:hsa:116113 UCSC:uc003oql.3 CTD:116113 GeneCards:GC06P041514
            HGNC:HGNC:20842 HPA:HPA007176 MIM:608924 neXtProt:NX_Q8IVH2
            PharmGKB:PA134943098 InParanoid:Q8IVH2 OMA:PQPKEAL ChiTaRS:FOXP4
            GenomeRNAi:116113 NextBio:79765 ArrayExpress:Q8IVH2 Bgee:Q8IVH2
            CleanEx:HS_FOXP4 Genevestigator:Q8IVH2 GermOnline:ENSG00000137166
            Uniprot:Q8IVH2
        Length = 680

 Score = 179 (68.1 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 59/212 (27%), Positives = 90/212 (42%)

Query:    11 LKPPGQFSPMEPCQTSSHKPEPSQSEVEDR-CCPSH---AKTHR-------KPPFTYTEL 59
             L+PPG  S       S H   P++    D+ C P     A+ H        +PPFTY  L
Sbjct:   422 LRPPGLGS------ASLHGGGPARRRSSDKFCSPISSELAQNHEFYKNADVRPPFTYASL 475

Query:    60 IEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA 117
             I QA+ E    QLT++ IY W +  F Y+ +N   WKN+VRHNLS++  F   V+     
Sbjct:   476 IRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCF---VRVENVK 532

Query:   118 GHLWNLSDME-PVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQ 176
             G +W + + E       K       +K  +  L        Y    + E+  P + +   
Sbjct:   533 GAVWTVDEREYQKRRPPKMTGSPTLVKNMISGLSYGALNASYQAALA-ESSFPLLNSPGM 591

Query:   177 PQPQPLNTM-SLAHDPL-QPFEVYSQESKTFP 206
               P   +++  L+HD +  P E       + P
Sbjct:   592 LNPGSASSLLPLSHDDVGAPVEPLPSNGSSSP 623


>UNIPROTKB|F1RUY4 [details] [associations]
            symbol:FOXP4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048617 "embryonic foregut morphogenesis" evidence=IEA]
            [GO:0046982 "protein heterodimerization activity" evidence=IEA]
            [GO:0042803 "protein homodimerization activity" evidence=IEA]
            [GO:0007507 "heart development" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] InterPro:IPR001766 InterPro:IPR015880
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 SMART:SM00355 GO:GO:0007507
            GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0005622 GO:GO:0048617
            GeneTree:ENSGT00690000101938 OMA:PQPKEAL EMBL:CT737369
            Ensembl:ENSSSCT00000001800 Uniprot:F1RUY4
        Length = 718

 Score = 179 (68.1 bits), Expect = 9.9e-11, P = 9.9e-11
 Identities = 59/212 (27%), Positives = 90/212 (42%)

Query:    11 LKPPGQFSPMEPCQTSSHKPEPSQSEVEDR-CCPSH---AKTHR-------KPPFTYTEL 59
             L+PPG  S       S H   P++    D+ C P     A+ H        +PPFTY  L
Sbjct:   460 LRPPGLGS------ASLHSGGPARRRSSDKFCSPISSELAQNHEFYKNADVRPPFTYASL 513

Query:    60 IEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGA 117
             I QA+ E    QLT++ IY W +  F Y+ +N   WKN+VRHNLS++  F   V+     
Sbjct:   514 IRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCF---VRVENVK 570

Query:   118 GHLWNLSDME-PVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQ 176
             G +W + + E       K       +K  +  L        Y    + E+  P + +   
Sbjct:   571 GAVWTVDEREYQKRRPPKMTGSPTLVKNMISGLSYGALNASYQAALA-ESSFPLLNSPGV 629

Query:   177 PQPQPLNTM-SLAHDPL-QPFEVYSQESKTFP 206
               P   +++  L+HD +  P E       + P
Sbjct:   630 LNPGSASSLLPLSHDDVGAPVEPLPSNGSSSP 661


>UNIPROTKB|E2QS90 [details] [associations]
            symbol:FOXD3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0001892 "embryonic placenta
            development" evidence=IEA] [GO:0001829 "trophectodermal cell
            differentiation" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0005634 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0044212
            GO:GO:0001829 GO:GO:0001892 Ensembl:ENSCAFT00000021812
            Uniprot:E2QS90
        Length = 411

 Score = 175 (66.7 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 42/109 (38%), Positives = 60/109 (55%)

Query:    43 PSHAKTHR-KPPFTYTELIEQALKEKHQ--LTVSGIYQWISERFPYYNQNDDRWKNSVRH 99
             PS  K    KPP++Y  LI  A+ +  Q  LT+SGI ++IS RFPYY +    W+NS+RH
Sbjct:   133 PSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRH 192

Query:   100 NLSINPHFRKGVK--ASQGAGHLWNLSDM-EPVEDASKSNWKKNRLKTY 145
             NLS+N  F K  +   + G G+ W L    E + D      ++ R K +
Sbjct:   193 NLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRH 241


>UNIPROTKB|F1NK00 [details] [associations]
            symbol:Gga.51501 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000122 "negative regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0001077 "RNA
            polymerase II core promoter proximal region sequence-specific DNA
            binding transcription factor activity involved in positive
            regulation of transcription" evidence=IEA] [GO:0001503
            "ossification" evidence=IEA] [GO:0001569 "patterning of blood
            vessels" evidence=IEA] [GO:0001656 "metanephros development"
            evidence=IEA] [GO:0001657 "ureteric bud development" evidence=IEA]
            [GO:0001756 "somitogenesis" evidence=IEA] [GO:0001946
            "lymphangiogenesis" evidence=IEA] [GO:0001974 "blood vessel
            remodeling" evidence=IEA] [GO:0003705 "RNA polymerase II distal
            enhancer sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0007219 "Notch signaling pathway" evidence=IEA] [GO:0008286
            "insulin receptor signaling pathway" evidence=IEA] [GO:0014032
            "neural crest cell development" evidence=IEA] [GO:0030199 "collagen
            fibril organization" evidence=IEA] [GO:0031490 "chromatin DNA
            binding" evidence=IEA] [GO:0033630 "positive regulation of cell
            adhesion mediated by integrin" evidence=IEA] [GO:0035050 "embryonic
            heart tube development" evidence=IEA] [GO:0035470 "positive
            regulation of vascular wound healing" evidence=IEA] [GO:0043010
            "camera-type eye development" evidence=IEA] [GO:0043066 "negative
            regulation of apoptotic process" evidence=IEA] [GO:0043565
            "sequence-specific DNA binding" evidence=IEA] [GO:0044212
            "transcription regulatory region DNA binding" evidence=IEA]
            [GO:0046620 "regulation of organ growth" evidence=IEA] [GO:0048010
            "vascular endothelial growth factor receptor signaling pathway"
            evidence=IEA] [GO:0048343 "paraxial mesodermal cell fate
            commitment" evidence=IEA] [GO:0048703 "embryonic viscerocranium
            morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
            evidence=IEA] [GO:0050880 "regulation of blood vessel size"
            evidence=IEA] [GO:0055010 "ventricular cardiac muscle tissue
            morphogenesis" evidence=IEA] [GO:0060038 "cardiac muscle cell
            proliferation" evidence=IEA] [GO:0072011 "glomerular endothelium
            development" evidence=IEA] [GO:0072112 "glomerular visceral
            epithelial cell differentiation" evidence=IEA] [GO:0072144
            "glomerular mesangial cell development" evidence=IEA] [GO:0090050
            "positive regulation of cell migration involved in sprouting
            angiogenesis" evidence=IEA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0005634 GO:GO:0008286
            GO:GO:0008283 GO:GO:0043565 GO:GO:0030199 GO:GO:0007219
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003705 GO:GO:0001077
            GO:GO:0000122 GO:GO:0044212 GO:GO:0033630 GO:GO:0031490
            GO:GO:0046620 GO:GO:0048010 GeneTree:ENSGT00690000101636
            OMA:LNHLPGH GO:GO:0090050 GO:GO:0035470 EMBL:AADN02042527
            EMBL:AADN02064686 EMBL:AADN02064687 IPI:IPI00592388
            Ensembl:ENSGALT00000037132 ArrayExpress:F1NK00 Uniprot:F1NK00
        Length = 467

 Score = 176 (67.0 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 35/85 (41%), Positives = 53/85 (62%)

Query:    43 PSHAKTHRKPPFTYTELIEQALKEK--HQLTVSGIYQWISERFPYYNQNDDRWKNSVRHN 100
             P+  K   KPP++Y  LI  A++     ++T++GIYQ+I +RFP+Y +N   W+NS+RHN
Sbjct:    65 PAAPKDLVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHN 124

Query:   101 LSINPHFRKGVKASQ--GAGHLWNL 123
             LS+N  F K  +  +  G G  W L
Sbjct:   125 LSLNECFVKVPRDDKKPGKGSYWTL 149


>ZFIN|ZDB-GENE-080305-12 [details] [associations]
            symbol:zgc:175247 "zgc:175247" species:7955 "Danio
            rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001766
            InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657
            PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            ZFIN:ZDB-GENE-080305-12 GO:GO:0005634 GO:GO:0043565 GO:GO:0003700
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GeneTree:ENSGT00700000104051 EMBL:CABZ01084703 IPI:IPI00889384
            Ensembl:ENSDART00000102505 Bgee:F1RES1 Uniprot:F1RES1
        Length = 316

 Score = 172 (65.6 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 42/122 (34%), Positives = 67/122 (54%)

Query:     6 LEPMELKPPGQFSPMEPCQTSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQALK 65
             L P +   P   SP+    +     E ++ + ED   P   K   KPPF+Y  LI  A++
Sbjct:    21 LLPGKSGTPADSSPVTDPPSEERSSEKAK-DAEDAGKP--VKLD-KPPFSYNALIMMAIR 76

Query:    66 E--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLW 121
             +  + +LT++GIY++I + FP+Y ++   W+NS+RHNLS+N  F K  +     G G+ W
Sbjct:    77 QSPEKRLTLNGIYEFIMKNFPFYREHKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYW 136

Query:   122 NL 123
              L
Sbjct:   137 ML 138


>UNIPROTKB|Q7ZYQ0 [details] [associations]
            symbol:foxi1e "Forkhead box protein I1-ema" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0042664
            "negative regulation of endodermal cell fate specification"
            evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISS] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISS] [GO:0048335 "negative regulation of
            mesodermal cell fate determination" evidence=IMP]
            InterPro:IPR001766 InterPro:IPR018122 Pfam:PF00250 PRINTS:PR00053
            PROSITE:PS00657 PROSITE:PS00658 PROSITE:PS50039 SMART:SM00339
            GO:GO:0007275 GO:GO:0005634 GO:GO:0045893 GO:GO:0043565
            GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            HSSP:Q99958 GO:GO:0042664 CTD:2299 HOVERGEN:HBG067944 KO:K09401
            EMBL:DQ026065 EMBL:BC042303 RefSeq:NP_001080367.1 UniGene:Xl.20089
            ProteinModelPortal:Q7ZYQ0 SMR:Q7ZYQ0 GeneID:380059 KEGG:xla:380059
            Xenbase:XB-GENE-494129 GO:GO:0048335 Uniprot:Q7ZYQ0
        Length = 373

 Score = 174 (66.3 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 41/122 (33%), Positives = 67/122 (54%)

Query:    51 KPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
             +PP++Y+ LI  A+      +LT+S IYQ++++ FP+YN++   W+NS+RHNLS+N  F+
Sbjct:   123 RPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFK 182

Query:   109 KGVKASQ--GAGHLWNLS-DMEPVEDASKSNWKKNRLKTYLESLQPSEWGDDYSGQNSTE 165
             K  +     G G+ W L  + E + D      K+ R      + Q S   D   G   +E
Sbjct:   183 KVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDVSPNGQLSS--DKPEGSPLSE 240

Query:   166 TP 167
             +P
Sbjct:   241 SP 242


>UNIPROTKB|Q6VAE8 [details] [associations]
            symbol:FOXD4 "FOXD4" species:9598 "Pan troglodytes"
            [GO:0001755 "neural crest cell migration" evidence=IBA] [GO:0003690
            "double-stranded DNA binding" evidence=IBA] [GO:0003705 "RNA
            polymerase II distal enhancer sequence-specific DNA binding
            transcription factor activity" evidence=IBA] [GO:0005667
            "transcription factor complex" evidence=IBA] [GO:0007389 "pattern
            specification process" evidence=IBA] [GO:0007422 "peripheral
            nervous system development" evidence=IBA] [GO:0008134
            "transcription factor binding" evidence=IBA] [GO:0008301 "DNA
            binding, bending" evidence=IBA] [GO:0009790 "embryo development"
            evidence=IBA] [GO:0030318 "melanocyte differentiation"
            evidence=IBA] [GO:0030513 "positive regulation of BMP signaling
            pathway" evidence=IBA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IBA]
            [GO:0048484 "enteric nervous system development" evidence=IBA]
            [GO:0048485 "sympathetic nervous system development" evidence=IBA]
            [GO:0048846 "axon extension involved in axon guidance"
            evidence=IBA] [GO:0048937 "lateral line nerve glial cell
            development" evidence=IBA] [GO:0050935 "iridophore differentiation"
            evidence=IBA] [GO:0051090 "regulation of sequence-specific DNA
            binding transcription factor activity" evidence=IBA] [GO:0051216
            "cartilage development" evidence=IBA] [GO:0060678 "dichotomous
            subdivision of terminal units involved in ureteric bud branching"
            evidence=IBA] [GO:0090184 "positive regulation of kidney
            development" evidence=IBA] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS50039
            SMART:SM00339 GO:GO:0001755 GO:GO:0043565 GO:GO:0045944
            GO:GO:0007422 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005667
            GO:GO:0003705 GO:GO:0008301 GO:GO:0009790 GO:GO:0003690
            GO:GO:0030513 GO:GO:0051216 GO:GO:0008134 GO:GO:0007389
            GO:GO:0048485 GO:GO:0030318 GO:GO:0048484 GO:GO:0051090
            GO:GO:0090184 GO:GO:0048846 eggNOG:COG5025 GO:GO:0048937
            HOVERGEN:HBG051641 GO:GO:0060678 GO:GO:0050935 HOGENOM:HOG000231285
            HSSP:Q01167 OrthoDB:EOG4JM7Q5 EMBL:AY345865 UniGene:Ptr.6432
            ProteinModelPortal:Q6VAE8 SMR:Q6VAE8 STRING:Q6VAE8
            InParanoid:Q6VAE8 Uniprot:Q6VAE8
        Length = 417

 Score = 175 (66.7 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 54/179 (30%), Positives = 85/179 (47%)

Query:    15 GQFSPMEPCQ--TSSHKPEPSQSEVEDRCCPSHAKTHRKPPFTYTELIEQA-LKEKHQ-L 70
             G   P +P +  T    P  S +  ED      A+   KPP++Y  LI  A L+  H+ L
Sbjct:    76 GGGGPSDPSEFGTKFRAPPRSAAASED------ARQPAKPPYSYIALITMAILQNPHKRL 129

Query:    71 TVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK--ASQGAGHLWNL--SDM 126
             T+SGI  +IS RFPYY +    W+NS+ HNLS+N  F K  +     G G+ W+L  +  
Sbjct:   130 TLSGICAFISGRFPYYRRKFPAWQNSIHHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQ 189

Query:   127 EPVEDAS----KSNWKKNRLKTYLESLQPSEWGDDYSGQNSTETPAPSMETMPQPQPQP 181
             +  ++ S    +  +K+++L        P      ++  ++   P P +     PQP P
Sbjct:   190 DMFDNGSFLRRRKRFKRHQLTPGAHLPHPFPLSAAHAALHNPR-PGPLLGAPAPPQPVP 247


>UNIPROTKB|O93529 [details] [associations]
            symbol:foxb1 "Forkhead box protein B1" species:8355
            "Xenopus laevis" [GO:0001756 "somitogenesis" evidence=ISS]
            [GO:0003677 "DNA binding" evidence=NAS] [GO:0003700
            "sequence-specific DNA binding transcription factor activity"
            evidence=NAS] [GO:0005634 "nucleus" evidence=ISS;NAS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0007398 "ectoderm development" evidence=IEP] [GO:0007412 "axon
            target recognition" evidence=ISS] [GO:0008542 "visual learning"
            evidence=ISS] [GO:0021767 "mammillary body development"
            evidence=ISS] [GO:0021855 "hypothalamus cell migration"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IEP] [GO:0022029
            "telencephalon cell migration" evidence=ISS] [GO:0030901 "midbrain
            development" evidence=ISS] [GO:0033504 "floor plate development"
            evidence=ISS] [GO:0043524 "negative regulation of neuron apoptotic
            process" evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
            evidence=ISS] [GO:0061374 "mammillothalamic axonal tract
            development" evidence=ISS] [GO:0061379 "inferior colliculus
            development" evidence=ISS] [GO:0061381 "cell migration in
            diencephalon" evidence=ISS] InterPro:IPR001766 InterPro:IPR018122
            Pfam:PF00250 PRINTS:PR00053 PROSITE:PS00657 PROSITE:PS00658
            PROSITE:PS50039 SMART:SM00339 GO:GO:0005634 GO:GO:0043565
            GO:GO:0008542 GO:GO:0043524 GO:GO:0003700 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006351 GO:GO:0001756 GO:GO:0007398
            GO:GO:0007412 GO:GO:0033504 GO:GO:0022029 CTD:27023
            HOVERGEN:HBG102104 KO:K09395 GO:GO:0061381 GO:GO:0021855
            GO:GO:0061379 GO:GO:0061374 EMBL:AF064810 EMBL:BC124883
            RefSeq:NP_001081836.1 UniGene:Xl.403 HSSP:Q63245
            ProteinModelPortal:O93529 SMR:O93529 PRIDE:O93529 GeneID:398078
            KEGG:xla:398078 Xenbase:XB-GENE-1018260 Uniprot:O93529
        Length = 319

 Score = 172 (65.6 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 50/156 (32%), Positives = 77/156 (49%)

Query:    50 RKPPFTYTELIEQALK--EKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHF 107
             +KPP++Y  L   A++  ++  L +S IY++I +RFPYY +N  RW+NS+RHNLS N  F
Sbjct:    12 QKPPYSYISLTAMAIQGSQEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRHNLSFNDCF 71

Query:   108 RKGVKASQ--GAGHLWNLSDM--EPVEDASKSNWKKNRLKTYL-ESLQPSEWGD--DYSG 160
              K  +     G G  W L     +  E+ S    +K R K    + L PS+  D   Y  
Sbjct:    72 IKIPRRPDQPGKGSFWALHPRCGDMFENGSFLRRRK-RFKVMKSDHLAPSKASDAAQYL- 129

Query:   161 QNSTETPAPSMETMPQPQPQPLNTMSLAHDPLQPFE 196
             Q   +    ++       P P++T +L   P   F+
Sbjct:   130 QQQAKLRLSALAASGTHLP-PMSTYNLGVSPTSSFK 164

WARNING:  HSPs involving 332 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.129   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      331       331   0.00090  116 3  11 23  0.47    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  582
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  273 KB (2141 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:04
  No. of threads or processors used:  24
  Search cpu time:  36.44u 0.09s 36.53t   Elapsed:  00:00:25
  Total cpu time:  36.49u 0.09s 36.58t   Elapsed:  00:00:29
  Start:  Thu Aug 15 13:22:45 2013   End:  Thu Aug 15 13:23:14 2013
WARNINGS ISSUED:  2

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