RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6789
         (331 letters)



>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 86.5 bits (214), Expect = 6e-22
 Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 5/95 (5%)

Query: 51  KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
           KPP++Y +LI QA+      QLT++GIY  I++ +PYY   D  W+NS+RHNLS+N +F 
Sbjct: 3   KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62

Query: 109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNR 141
           K  ++ +  G G  W + D        +  ++K R
Sbjct: 63  KVPRSQEEPGKGSFWRI-DPASESKLIEQAFRKRR 96


>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 84.5 bits (209), Expect = 2e-21
 Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 5/79 (6%)

Query: 51  KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
           +PPFTY  LI QA+ E    QLT++ IY W +  F Y+ +N   WKN+VRHNLS++  F 
Sbjct: 2   RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCF- 60

Query: 109 KGVKASQGAGHLWNLSDME 127
             V+     G +W + ++E
Sbjct: 61  --VRVENVKGAVWTVDEVE 77


>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 97

 Score = 84.6 bits (209), Expect = 3e-21
 Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 5/95 (5%)

Query: 51  KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
           KPP++Y  LI  A+ +  + +LT+SGI ++IS RFPYY +    W+NS+RHNLS+N  F 
Sbjct: 2   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61

Query: 109 KGVKASQ--GAGHLWNLSDMEPVEDASKSNWKKNR 141
           K  +     G G+ W L D +  +     ++ + R
Sbjct: 62  KIPREPGNPGKGNYWTL-DPQSEDMFDNGSFLRRR 95


>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
           fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 83.3 bits (206), Expect = 9e-21
 Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 4/77 (5%)

Query: 51  KPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFR 108
           KPP++Y  LI  A++   + ++T++GIYQ+I +RFP+Y +N   W+NS+RHNLS+N  F 
Sbjct: 4   KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63

Query: 109 KGVKAS--QGAGHLWNL 123
           K  +     G G  W L
Sbjct: 64  KVPRDDKKPGKGSYWTL 80


>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 85

 Score = 78.8 bits (194), Expect = 3e-19
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 47  KTHRKPPFTYTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDR-----WKNSVRH 99
           + +     +Y ELI QA++   + +LT++ IY+W+    PY+    D      WKNS+RH
Sbjct: 1   RRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRH 60

Query: 100 NLSINPHFRKGVKASQGAGHLWNL 123
           NLS++  F K    + G    W L
Sbjct: 61  NLSLHSKFIKVHNEATGKSSWWML 84


>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 75

 Score = 75.7 bits (186), Expect = 3e-18
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)

Query: 56  YTELIEQALKE--KHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA 113
           Y  LI  A+++    +LT++ I +++  +FP++  +   W+NSVRHNLS+N  F K ++ 
Sbjct: 1   YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRD 60

Query: 114 ---SQGAGHLWNL 123
                G  + W L
Sbjct: 61  PSRPWGKDNYWML 73


>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581
           {Streptococcus pyogenes [TaxId: 1314]}
          Length = 112

 Score = 27.7 bits (61), Expect = 0.79
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 206 PYEECKDVLYIQSNDNVLYTPHEDHKLYHNDNVLYTPGEDHKLYQYEPSKNLIM 259
           P +    ++ I S    +    E +++     ++   G  H LY  E  + L++
Sbjct: 56  PGDA---MVTILSGLAEITIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLV 106


>d2pnwa1 b.52.1.4 (A:5-369) Membrane-bound lytic murein
           transglycosylase A, MLTA {Agrobacterium tumefaciens
           [TaxId: 358]}
          Length = 365

 Score = 26.1 bits (57), Expect = 6.8
 Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 7/45 (15%)

Query: 58  ELIEQALKEKHQLTVSGIYQWISERFPYYNQNDDRWKNSVRHNLS 102
            L+++   +   +++  I QW+         + D     + HN S
Sbjct: 214 LLLDRGELDPKTISMQTIRQWL-------ADHPDEVDGVLWHNRS 251


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.395 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,219,869
Number of extensions: 55000
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 12
Length of query: 331
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,226,816
Effective search space: 300569920
Effective search space used: 300569920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.5 bits)