RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy679
(510 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 43.5 bits (103), Expect = 3e-06
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 418 HLTTHIRTHTGEKPFSCDVCGRKFAR 443
+L H+RTHTGEKP+ C VCG+ F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 43.1 bits (102), Expect = 3e-06
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 390 ELTRHIRIHTGQKPFQCRICMRSFSR 415
L RH+R HTG+KP++C +C +SFS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 42.0 bits (98), Expect = 6e-04
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 359 KYPNRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCR----ICMRSFS 414
P+R K +PY CPVE C++++ + L H +H Q M FS
Sbjct: 336 DTPSRMLKV-KDGKPYKCPVEGCNKKYKNQNGLKYH-MLHGHQNQKLHENPSPEKMNIFS 393
Query: 415 RSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAK 452
D KP+ C+VC +++ + K H K
Sbjct: 394 AKD------------KPYRCEVCDKRYKNLNGLKYHRK 419
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional.
Length = 279
Score = 39.0 bits (91), Expect = 0.004
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 471 QQQAQQQQQQNHVHQQQQHHHHHHHHHP 498
+ +H H + HH H HHHH
Sbjct: 118 ENMHHHDHDHDHDHDHEHHHDHGHHHHH 145
Score = 39.0 bits (91), Expect = 0.004
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 470 SQQQAQQQQQQNHVH---QQQQHHHHHHHHHPNMEGMP 504
+ + +H H +HHH H HHH + G
Sbjct: 113 ERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGAT 150
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 37.2 bits (86), Expect = 0.005
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 403 PFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRH 450
P+ C +C+ FS S L HIR K C VCG++F +D H
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDH 118
Score = 35.6 bits (82), Expect = 0.014
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 373 PYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHI 423
PY CP+ C FS S L +HIR K C +C + F +D H+
Sbjct: 73 PYVCPL--CLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHV 119
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 38.9 bits (90), Expect = 0.006
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 401 QKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRH 450
+P C C SFSR +HLT HIR+HTGEKP C G + S +
Sbjct: 31 PRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELS 80
Score = 34.3 bits (78), Expect = 0.16
Identities = 31/68 (45%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 370 HERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMR--SFSRSDHLTTHIRTHT 427
RP +CP NC FSR + LTRHIR HTG+KP QC SFSR L+ H+RTH
Sbjct: 30 APRPDSCP--NCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHH 87
Query: 428 GEKPFSCD 435
Sbjct: 88 NNPSDLNS 95
Score = 32.4 bits (73), Expect = 0.67
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 372 RPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRS 416
+P++CP C + FSR+D L RHI +HT P + ++ S S
Sbjct: 320 KPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFS 364
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 32.8 bits (75), Expect = 0.017
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 404 FQCRICMRSFSRSDHLTTHIRTH 426
++C C + F L H+RTH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.5 bits (69), Expect = 0.098
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 374 YACPVENCDRRFSRSDELTRHIRIH 398
Y CP C + F L H+R H
Sbjct: 1 YRCPE--CGKVFKSKSALREHMRTH 23
Score = 30.1 bits (68), Expect = 0.14
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 432 FSCDVCGRKFARSDEKKRHAKVH 454
+ C CG+ F + H + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 32.6 bits (74), Expect = 0.019
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 404 FQCRICMRSFSRSDHLTTHIRTH 426
F+C +C +SFS D L H+R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 28.8 bits (64), Expect = 0.43
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 374 YACPVENCDRRFSRSDELTRHIRIH 398
+ CP+ C + FS D L RH+R H
Sbjct: 1 FKCPL--CGKSFSSKDALKRHLRKH 23
Score = 28.0 bits (62), Expect = 0.76
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 432 FSCDVCGRKFARSDEKKRHAKVH 454
F C +CG+ F+ D KRH + H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 32.3 bits (74), Expect = 0.023
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 379 ENCDRRFSRSDELTRHIRIH 398
+C + FSR L RH+R H
Sbjct: 3 PDCGKSFSRKSNLKRHLRTH 22
Score = 31.9 bits (73), Expect = 0.037
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 405 QCRICMRSFSRSDHLTTHIRTH 426
+C C +SFSR +L H+RTH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 29.2 bits (66), Expect = 0.30
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 433 SCDVCGRKFARSDEKKRHAKVH 454
C CG+ F+R KRH + H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO. This family
contains the bacterial type III secretion protein YscO,
which is approximately 150 residues long. YscO has been
shown to be required for high-level expression and
secretion of the anti-host proteins V antigen and Yops
in Yersinia pestis.
Length = 152
Score = 34.7 bits (80), Expect = 0.041
Identities = 13/78 (16%), Positives = 31/78 (39%)
Query: 418 HLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQ 477
+R + ++ ++ R A+ L++ K + K A + Q+QA+ Q
Sbjct: 74 QQVGLLRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARKAQEKFAELARQEQAEAQ 133
Query: 478 QQQNHVHQQQQHHHHHHH 495
Q+ ++ + +Q
Sbjct: 134 AQRQYLEELEQEEFRTVS 151
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3. The
C.elegans Notch pathway, involved in the control of
growth, differentiation and patterning in animal
development, relies on either of the receptors GLP-1 or
LIN-12. Both these receptors promote signalling by the
recruitment of LAG-3 to target promoters, where it then
acts as a transcriptional activator. LAG-3 works as a
ternary complex together with the DNA binding protein,
LAG-1.
Length = 476
Score = 35.3 bits (80), Expect = 0.067
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 456 KQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHHHPNM 500
Q + +M M Q+Q Q QQQQ HQQ Q H H M
Sbjct: 398 HQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHGQM 442
Score = 32.6 bits (73), Expect = 0.51
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 453 VHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHHHPN 499
+L+Q + + QQQAQ QQ HQQ H + PN
Sbjct: 402 AYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHGQMGYGIPN 448
Score = 31.5 bits (70), Expect = 1.1
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 454 HLKQRSKKESKMAVMMSQQQA----QQQQQQNHVHQQQQHHHHHHHHH 497
H+ Q +++++KM ++ Q+ +QQ+QQ +HQ QQ H
Sbjct: 321 HIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQ 368
Score = 30.7 bits (68), Expect = 2.0
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 457 QRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHHHPNMEG 502
++ +++ M QQQ + QQQQ + QQQQ H HH N G
Sbjct: 346 EQQRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGG 391
>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic
component; Reviewed.
Length = 311
Score = 34.2 bits (79), Expect = 0.12
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 479 QQNHVHQQQQHHHHHHHHH 497
+ H H HH
Sbjct: 121 HHDDDHDHAGHEKSDEDHH 139
Score = 33.4 bits (77), Expect = 0.22
Identities = 7/20 (35%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 482 HVHQQQQHHHHHHHHHP-NM 500
H H + HHH NM
Sbjct: 126 HDHAGHEKSDEDHHHGEYNM 145
>gnl|CDD|226535 COG4049, COG4049, Uncharacterized protein containing archaeal-type
C2H2 Zn-finger [General function prediction only].
Length = 65
Score = 30.7 bits (69), Expect = 0.21
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 423 IRTHTGEKPFSCDVCGRKFARSDEKKRH---AKVHLKQRSKKESK 464
+R GE+ C CG F R + RH A L R K + K
Sbjct: 9 VRDRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGWLFGRGKPKGK 53
>gnl|CDD|197698 smart00396, ZnF_UBR1, Putative zinc finger in N-recognin, a
recognition component of the N-end rule pathway. Domain
is involved in recognition of N-end rule substrates in
yeast Ubr1p.
Length = 71
Score = 30.9 bits (70), Expect = 0.22
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 406 CRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKK 448
C +C F S H + T CD CG K A +++ K
Sbjct: 25 CVLCSDCFRPSCHKGHDVSLKTSRGSGICD-CGDKEAWNEDLK 66
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 33.6 bits (77), Expect = 0.27
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 283 VQAQPGIIPKQEPVYGNTNLSGCGSLVNLSDPNNPGSSYPVQLAEYN 329
+QA +IPK +YG + G + +S G+ PV+L+ Y+
Sbjct: 282 IQAGDLVIPKGTVLYGTAKIQGERLDIKISSIEYNGTILPVELSVYD 328
>gnl|CDD|221930 pfam13135, DUF3947, Protein of unknown function (DUF3947). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 80 amino acids in length.
Length = 76
Score = 30.6 bits (69), Expect = 0.30
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 472 QQAQQQQQQNHVHQQQQHHHHHHHHHP 498
QA Q QQQ QQQ ++
Sbjct: 28 HQAMQMQQQMQPAMQQQGQQPYYPSVE 54
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 33.0 bits (76), Expect = 0.36
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 254 YARVNQSLMHSPNNKYQ-WLDSPVEYSASIVQAQPGIIPKQ 293
Y+R + P K++ W + +E A QA+ G+IPK+
Sbjct: 5 YSRPEMVAIWEPETKFRIWFE--IEAHACEAQAELGVIPKE 43
>gnl|CDD|234354 TIGR03789, pdsO, proteobacterial sortase system OmpA family
protein. A newly defined histidine kinase (TIGR03785)
and response regulator (TIGR03787) gene pair occurs
exclusively in Proteobacteria, mostly of marine origin,
nearly all of which contain a subfamily 6 sortase
(TIGR03784) and its single dedicated target protein
(TIGR03788) adjacent to to the sortase. This protein
family shows up in only in those species with the
histidine kinase/response regulator gene pair, and often
adjacent to that pair. It belongs to the OmpA protein
family (pfam00691). Its function is unknown. We assign
the gene symbol pdsO, for Proteobacterial Dedicated
Sortase system OmpA family protein.
Length = 239
Score = 32.5 bits (74), Expect = 0.42
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 455 LKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHH 490
+ +++ +M + +Q+Q +Q + Q Q H
Sbjct: 83 QQHIAQQRQQMVAL-TQKQQALEQLEAEYQQAQVHL 117
>gnl|CDD|177648 PHA03420, PHA03420, E4 protein; Provisional.
Length = 137
Score = 31.1 bits (70), Expect = 0.55
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 480 QNHVHQQQQHHHHHHHHHP 498
H HQQ HH H P
Sbjct: 55 HPHRHQQDDHHLQDRQHLP 73
>gnl|CDD|217089 pfam02535, Zip, ZIP Zinc transporter. The ZIP family consists of
zinc transport proteins and many putative metal
transporters. The main contribution to this family is
from the Arabidopsis thaliana ZIP protein family these
proteins are responsible for zinc uptake in the plant.
Also found within this family are C. elegans proteins of
unknown function which are annotated as being similar to
human growth arrest inducible gene product, although
this protein in not found within this family.
Length = 314
Score = 31.9 bits (73), Expect = 0.80
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 452 KVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHHHPNMEG 502
+ H + + N VH + HHHHH + +G
Sbjct: 104 RGHSHGHDHGHDGEHSHTVPDEESGAVESNVVHHEHGEGPHHHHHEGHEKG 154
Score = 28.9 bits (65), Expect = 5.9
Identities = 9/59 (15%), Positives = 16/59 (27%)
Query: 440 KFARSDEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHHHP 498
K + + H+ H + S + + + HHHH H
Sbjct: 96 KLLTYYKGRGHSHGHDHGHDGEHSHTVPDEESGAVESNVVHHEHGEGPHHHHHEGHEKG 154
>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region. SelP is the
only known eukaryotic selenoprotein that contains
multiple selenocysteine (Sec) residues, and accounts for
more than 50% of the selenium content of rat and human
plasma. It is thought to be glycosylated. SelP may have
antioxidant properties. It can attach to epithelial
cells, and may protect vascular endothelial cells
against peroxynitrite toxicity. The high selenium
content of SelP suggests that it may be involved in
selenium intercellular transport or storage. The
promoter structure of bovine SelP suggest that it may be
involved in countering heavy metal intoxication, and may
also have a developmental function. The N-terminal
region of SelP can exist independently of the C terminal
region. Zebrafish selenoprotein Pb lacks the C terminal
Sec-rich region, and a protein encoded by the rat SelP
gene and lacking this region has also been reported.
N-terminal region contains a conserved SecxxCys motif,
which is similar to the CysxxCys found in thioredoxins.
It is speculated that the N terminal region may adopt a
thioredoxin fold and catalyze redox reactions. The
N-terminal region also contains a His-rich region, which
is thought to mediate heparin binding. Binding to
heparan proteoglycans could account for the membrane
binding properties of SelP. The function of the
bacterial members of this family is uncharcterised.
Length = 238
Score = 31.4 bits (71), Expect = 0.92
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 456 KQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHHHP 498
K+ + V +Q +H HQ HHH H HHHP
Sbjct: 166 KKVTLATVNKPVEAEPRQDHPHHHSHHEHQGHAHHHPHGHHHP 208
Score = 30.6 bits (69), Expect = 1.6
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 480 QNHVHQQQQHHHHHHHHHPN 499
+ HH H HHH +
Sbjct: 191 HHEHQGHAHHHPHGHHHPGS 210
>gnl|CDD|224113 COG1192, Soj, ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning].
Length = 259
Score = 31.3 bits (71), Expect = 0.99
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 29/81 (35%)
Query: 29 ISNSGGDGKTTSFVNLSHPPTRSIPEYLILVEMPKLRVLKRPKGCSCIVDISPYLESLTG 88
+ GG GKTT+ VNL+ L + +VL ++D+ P
Sbjct: 8 ANQKGGVGKTTTAVNLAA----------ALAKRGGKKVL--------LIDLDP------- 42
Query: 89 TRGSLS---GNSFERPSTKDD 106
+GSL+ G + +
Sbjct: 43 -QGSLTSWLGLRPDLEGDLYN 62
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 31.3 bits (71), Expect = 1.2
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 443 RSDEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQ 488
R ++++ AK +QR KKE + A + Q+QA +Q++ + +++
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERL 111
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 31.9 bits (72), Expect = 1.2
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 234 CGALKQPSSSYSSCSGEQDVYARVNQSLMHSPNNKYQWLDSPVEYSASIVQAQPGIIPKQ 293
LK S G V Q + + KY + E S++ + A +I
Sbjct: 3311 RDVLKMSKVIVSE--GSIFV-----QRYLDTFPFKYCIISGVDELSSTFIMALSTLIMSL 3363
Query: 294 EPV 296
PV
Sbjct: 3364 VPV 3366
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 31.1 bits (70), Expect = 1.3
Identities = 24/88 (27%), Positives = 29/88 (32%), Gaps = 15/88 (17%)
Query: 376 CPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMR---------SFSRSDHLTTHIRTH 426
CP C RR EL +H + G C C+ RS L H
Sbjct: 154 CPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGG 211
Query: 427 TGEKPFS----CDVCGRKFARSDEKKRH 450
E+ F C C F DE +RH
Sbjct: 212 LEEEGFKGHPLCIFCKIYFYDDDELRRH 239
>gnl|CDD|204848 pfam12203, HDAC4_Gln, Glutamine rich N terminal domain of histone
deacetylase 4. This domain is found in eukaryotes, and
is approximately 90 amino acids in length. The family is
found in association with pfam00850. The domain forms an
alpha helix which complexes to form a tetramer. The
glutamine rich domains have many intra- and
inter-helical interactions which are thought to be
involved in reversible assembly and disassembly of
proteins. The domain is part of histone deacetylase 4
(HDAC4) which removes acetyl groups from histones. This
restores their positive charge to allow stronger DNA
binding thus restricting transcriptional activity.
Length = 92
Score = 29.2 bits (65), Expect = 1.5
Identities = 9/46 (19%), Positives = 24/46 (52%)
Query: 449 RHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHH 494
R + L++ K++ ++ M QQ+ +++++ +Q+Q H
Sbjct: 42 RQHEAQLQEHLKQQQELLAMKRQQELLEKERKLEQQRQEQELEKHR 87
>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional.
Length = 110
Score = 29.5 bits (67), Expect = 1.6
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 461 KESKMAVMMSQQQAQQQQQQNHVHQQQQ 488
+ K+ + Q Q QQQ Q+ Q Q
Sbjct: 7 RRRKLEELQKQAQEQQQAQEEQEEAQAQ 34
>gnl|CDD|197397 cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich N-terminal
helical domain of various Class IIa histone deacetylases
(HDAC4, HDAC5 and HDCA9). This superfamily consists of
a glutamine-rich N-terminal helical extension to certain
Class IIa histone deacetylases (HDACs), including HDAC4,
HDAC5 and HDAC9; it is missing in HDAC7. It is referred
to as the glutamine-rich domain, and confers
responsiveness to calcium signals and mediates
interactions with transcription factors and cofactors.
This domain is able to repress transcription
independently of the HDAC's C-terminal, zinc-dependent
catalytic domain. It has many intra- and inter-helical
interactions which are possibly involved in reversible
assembly and disassembly of proteins. HDACs regulate
diverse cellular processes through enzymatic
deacetylation of histone as well as non-histone
proteins, in particular deacetylating N(6)-acetyl-lysine
residues.
Length = 90
Score = 28.9 bits (64), Expect = 1.9
Identities = 9/50 (18%), Positives = 24/50 (48%)
Query: 445 DEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHH 494
+ R + L++ K++ +M + QQ+ ++Q++ +Q+Q
Sbjct: 36 ENLTRQHEAQLQEHIKQQQEMLAIKQQQELLEKQRKLEQQRQEQELEKQR 85
>gnl|CDD|214746 smart00614, ZnF_BED, BED zinc finger. DNA-binding domain in
chromatin-boundary-element-binding proteins and
transposases.
Length = 50
Score = 27.8 bits (62), Expect = 1.9
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 405 QCRICMRSFSRSDHL-TTHIRTH 426
+C+ C + SRS T+++R H
Sbjct: 20 KCKYCGKKLSRSSKGGTSNLRRH 42
>gnl|CDD|237322 PRK13261, ureE, urease accessory protein UreE; Provisional.
Length = 159
Score = 29.5 bits (67), Expect = 2.2
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 482 HVHQQQQHHHHHHHHH 497
+ + H H H H H
Sbjct: 144 YGGAFRHHGHSHDHSH 159
Score = 29.5 bits (67), Expect = 2.2
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 478 QQQNHVHQQQQHHHHHHHHHP 498
+ + + HH H H H
Sbjct: 138 EPERGAYGGAFRHHGHSHDHS 158
>gnl|CDD|237323 PRK13263, ureE, urease accessory protein UreE; Provisional.
Length = 206
Score = 29.8 bits (67), Expect = 2.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 480 QNHVHQQQQHHHHHHHHH 497
+HVH H HHHHH
Sbjct: 189 HDHVHGPGCGHGHHHHHR 206
Score = 29.0 bits (65), Expect = 4.8
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 474 AQQQQQQNHVHQQQQHHHHHHHHHP 498
AQQ ++H H H H H H
Sbjct: 164 AQQVFHEHHGHSHSHSDHDHDHDHD 188
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 30.3 bits (69), Expect = 2.5
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 445 DEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQ 488
+ K+R K++ + E + Q+A+++Q + + Q+
Sbjct: 214 ERKERQ-----KEKEEAEKRRRQKQELQRAREEQIEEKEERLQE 252
>gnl|CDD|236005 PRK07376, PRK07376, NAD(P)H-quinone oxidoreductase subunit F;
Validated.
Length = 673
Score = 30.4 bits (69), Expect = 2.5
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 474 AQQQQQQNHVHQQQQHHHHHHHHHPNMEGMPVVTTPL 510
A + H ++ HHHH P+ E +T PL
Sbjct: 472 AADAPGHHEGHHEEHGEHHHHSGSPH-ESPWTMTLPL 507
Score = 28.8 bits (65), Expect = 7.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 471 QQQAQQQQQQNHVHQQQQHHHHHHHHH 497
Q++ H+ H HHHH
Sbjct: 466 QKELLAAADAPGHHEGHHEEHGEHHHH 492
>gnl|CDD|113558 pfam04792, LcrV, V antigen (LcrV) protein. Yersinia pestis, the
aetiologic agent of plague, secretes a set of
environmentally regulated, plasmid pCD1-encoded
virulence proteins termed Yops and V antigen (LcrV) by a
type III secretion mechanism. LcrV is a multifunctional
protein that has been shown to act at the level of
secretion control by binding the Ysc inner-gate protein
LcrG and to modulate the host immune response by
altering cytokine production. LcrV is also necessary for
full induction of low-calcium response (LCR) stimulon
virulence gene transcription. Family members are not
confined to Yersinia pestis.
Length = 326
Score = 30.1 bits (67), Expect = 2.7
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 53 PEYLILVEMPKLRVLKRPKGCSCIVDISPYLESLTGTRGSLSGNSFERPSTKDDSGELCQ 112
EY IL ++P+ + + I+ I +LE G+L G E P KD++ EL
Sbjct: 214 AEYAILEKLPQTTI-QEGDTEKGILSIKDFLEGEKKQSGALGGLKDEYPFEKDNN-ELGH 271
Query: 113 PKTELITDS-PLGLHEEEEETSLSSTISMY 141
T S PL E+ T L+ S +
Sbjct: 272 FATTCSDKSRPLNDKVNEKTTLLNDISSRF 301
>gnl|CDD|153362 cd07678, F-BAR_FCHSD1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of FCH and double SH3
domains 1 (FCHSD1). F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. FCH and double SH3 domains 1 (FCHSD1)
contains an N-terminal F-BAR domain and two SH3 domains
at the C-terminus. It has been characterized only in
silico, and its biological function is still unknown.
F-BAR domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 263
Score = 30.0 bits (67), Expect = 3.0
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 410 MRSFSRSDHLTTHI-RTHTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQRSKKESKMAVM 468
++ S+S L + R K + DV R +SD H+K L++ S K S +
Sbjct: 129 VKELSKSKKLYGQLERVSEVAKEKAADVEAR-LNKSDHGIFHSKASLQKLSAKFSAQSAE 187
Query: 469 MSQQQAQQQQQQ--NHVHQQQQHHHHHHHHHPNM 500
SQQ + + N V H++ P +
Sbjct: 188 YSQQLQAARNEYLLNLVAANAHLDHYYQEELPAI 221
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase.
Length = 379
Score = 29.8 bits (67), Expect = 3.5
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 482 HVHQQQQHHHHHHHHHPN 499
HHHHHH HP+
Sbjct: 34 PHSIHHHSHHHHHHKHPD 51
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo
kinase and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 28.8 bits (65), Expect = 3.6
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 443 RSDEKKRHAKV--HLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHH 491
R+++K R LK K+ + + + Q Q++++ ++Q+ H
Sbjct: 58 RAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQEQEKKRMKAEKEEQEQKH 108
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein;
Reviewed.
Length = 200
Score = 29.3 bits (66), Expect = 3.7
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 457 QRSKKESK-MAVMMSQQQ-AQQQQQQNHVHQQQQHHHHHH 494
+RS+ +K +A ++ + QQQQ+Q+ + Q+ HH
Sbjct: 147 ERSQHANKRLARLLIAWKLEQQQQEQSAALKSQRRMFHHQ 186
>gnl|CDD|234967 PRK01642, cls, cardiolipin synthetase; Reviewed.
Length = 483
Score = 29.7 bits (68), Expect = 4.0
Identities = 5/55 (9%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 454 HLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHHH--PNMEGMPVV 506
+L +R + +++ + + + + H+ ++ ++G+P +
Sbjct: 59 YLGKRRAERARLMWPSTAKWLRDLKACKHIFAEENSEVAAPLFRLCERLQGIPGL 113
>gnl|CDD|189987 pfam01440, Gemini_AL2, Geminivirus AL2 protein. Geminiviruses are
small, ssDNA-containing plant viruses. Geminiviruses
contain three ORFs (designated AL1, AL2, and AL3) that
overlap and are specified by multiple polycistronic
mRNAs. The AL2 gene product transactivates expression of
TGMV coat protein gene, and BR1 movement protein.
Length = 134
Score = 28.7 bits (65), Expect = 4.1
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 479 QQNHVHQQQQHHHHHHHHHPN 499
Q H HH P+
Sbjct: 79 QDPQPRGPTIHLEQRHHPSPD 99
>gnl|CDD|235045 PRK02506, PRK02506, dihydroorotate dehydrogenase 1A; Reviewed.
Length = 310
Score = 29.5 bits (67), Expect = 4.3
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 301 NLSGCGSLV--NLSDPNNPGSSYPVQLAEYNPSTSKGHEILSQV--YQQSPLPLKLVP 354
S LV NLS PN PG Q+A Y+ T++ +IL +V Y PL +KL P
Sbjct: 115 QASDFNGLVELNLSCPNVPGKP---QIA-YDFETTE--QILEEVFTYFTKPLGVKLPP 166
>gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor.
ABF1 is a sequence-specific DNA binding protein involved
in transcription activation, gene silencing and
initiation of DNA replication. ABF1 is known to remodel
chromatin, and it is proposed that it mediates its
effects on transcription and gene expression by
modifying local chromatin architecture. These functions
require a conserved stretch of 20 amino acids in the
C-terminal region of ABF1 (amino acids 639 to 662 S.
cerevisiae). The N-terminal two thirds of the protein
are necessary for DNA binding, and the N-terminus (amino
acids 9 to 91 in S. cerevisiae) is thought to contain a
novel zinc-finger motif which may stabilise the protein
structure.
Length = 508
Score = 29.7 bits (66), Expect = 4.4
Identities = 13/44 (29%), Positives = 13/44 (29%)
Query: 454 HLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHHH 497
H Q S A Q Q H HQ QQ H H
Sbjct: 292 HQHQHHHHPSIPAHHQHQLPEGHQHDHQHHHQHQQQDLQHQEQH 335
>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA. These proteins have been
shown to function as initial receptors in the ABC uptake
of Zn2+. They belong to the TroA superfamily of
periplasmic metal binding proteins that share a distinct
fold and ligand binding mechanism. They are comprised
of two globular subdomains connected by a single helix
and bind their specific ligands in the cleft between
these domains. A typical TroA protein is comprised of
two globular subdomains connected by a single helix and
can bind the metal ion in the cleft between these
domains. In addition, these proteins sometimes have a
low complexity region containing a metal-binding
histidine-rich motif (repetitive HDH sequence).
Length = 286
Score = 29.3 bits (66), Expect = 4.7
Identities = 2/19 (10%), Positives = 3/19 (15%)
Query: 482 HVHQQQQHHHHHHHHHPNM 500
H H +
Sbjct: 103 DHEHAHGEHDGHEEGGLDP 121
Score = 29.3 bits (66), Expect = 5.3
Identities = 3/16 (18%), Positives = 4/16 (25%)
Query: 482 HVHQQQQHHHHHHHHH 497
+ H H H
Sbjct: 101 EHDHEHAHGEHDGHEE 116
Score = 28.9 bits (65), Expect = 6.2
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 482 HVHQQQQHHHHHHHHH 497
H H+ H H
Sbjct: 102 HDHEHAHGEHDGHEEG 117
Score = 28.5 bits (64), Expect = 8.1
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 482 HVHQQQQHHHHHHHHH 497
+H H H H
Sbjct: 99 DHEHDHEHAHGEHDGH 114
Score = 28.5 bits (64), Expect = 8.9
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 482 HVHQQQQHHHHHHHHHP 498
H H + H H H
Sbjct: 100 HEHDHEHAHGEHDGHEE 116
>gnl|CDD|238500 cd01018, ZntC, Metal binding protein ZntC. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
They are comprised of two globular subdomains connected
by a long alpha helix and bind their specific ligands in
the cleft between these domains. In addition, many of
these proteins possess a metal-binding histidine-rich
motif (repetitive HDH sequence).
Length = 266
Score = 28.9 bits (65), Expect = 5.5
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 463 SKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHHH 497
KM V+ + +H H H HHHH +
Sbjct: 75 PKMQVVNMSKGITLIPMADHHHHHHGEHEHHHHGN 109
Score = 28.5 bits (64), Expect = 7.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 467 VMMSQQQAQQQQQQNHVHQQQQHHHHHHHHH 497
V MS+ +H H +H HHHH ++
Sbjct: 80 VNMSKGITLIPMADHHHHHHGEHEHHHHGNY 110
>gnl|CDD|206084 pfam13913, zf-C2HC_2, zinc-finger of a C2HC-type. This family
contains a number of divergent C2H2 type zinc fingers.
Length = 25
Score = 25.6 bits (57), Expect = 5.8
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 433 SCDVCGRKFARSDEKKRHAKV 453
C +CGRKFA D +H KV
Sbjct: 4 PCPICGRKFA-PDRLAKHEKV 23
>gnl|CDD|218259 pfam04775, Bile_Hydr_Trans, Acyl-CoA thioester hydrolase/BAAT
N-terminal region. This family consists of the amino
termini of acyl-CoA thioester hydrolase and bile
acid-CoA:amino acid N-acetyltransferase (BAAT). This
region is not thought to contain the active site of
either enzyme. Thioesterase isoforms have been
identified in peroxisomes, cytoplasm and mitochondria,
where they are thought to have distinct functions in
lipid metabolism. For example, in peroxisomes, the
hydrolase acts on bile-CoA esters.
Length = 126
Score = 28.0 bits (63), Expect = 6.1
Identities = 11/43 (25%), Positives = 14/43 (32%)
Query: 352 LVPVKPRKYPNRPSKTPVHERPYACPVENCDRRFSRSDELTRH 394
+ P + R K V PY +E S L RH
Sbjct: 70 MRPEPGGRPGLRLRKRDVVPTPYTVELEVYSGHELASATLERH 112
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 29.4 bits (66), Expect = 6.4
Identities = 7/40 (17%), Positives = 10/40 (25%)
Query: 465 MAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHHHPNMEGMP 504
+ +QQ QQQ P + P
Sbjct: 243 LQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQP 282
Score = 29.4 bits (66), Expect = 6.5
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 470 SQQQAQQQQQQNHVHQQQQHHHHHHHHHPNME 501
QQ Q QQ+ +Q + E
Sbjct: 307 LVQQPQGQQRGPQFREQLVQLSQQQREALSQE 338
Score = 29.0 bits (65), Expect = 8.6
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 470 SQQQAQQQQQQNHVHQQQQHHHHHHHHHPNME 501
Q Q QQ+ ++Q +
Sbjct: 306 PLVQQPQGQQRGPQFREQLVQLSQQQREALSQ 337
>gnl|CDD|215943 pfam00487, FA_desaturase, Fatty acid desaturase.
Length = 251
Score = 28.8 bits (64), Expect = 6.7
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 487 QQHHHHHHHHHPNMEGMP 504
+ H HHHH N P
Sbjct: 58 RISHLRHHHHTNNPGKDP 75
>gnl|CDD|215971 pfam00524, PPV_E1_N, E1 Protein, N terminal domain.
Length = 131
Score = 27.6 bits (62), Expect = 8.4
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 64 LRVLKR-----PKGCSCIVDISPYLESLTGTRGS 92
++ LKR P+ S + D+SP L++++ + S
Sbjct: 76 VQALKRKYLSSPESASVVADLSPRLQAISISPRS 109
>gnl|CDD|183722 PRK12750, cpxP, periplasmic repressor CpxP; Reviewed.
Length = 170
Score = 27.9 bits (62), Expect = 8.6
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 449 RHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQ--QQQHHHHHHHHHPN 499
+ + +K K+ ++++ +Q+A+ Q+ Q Q Q + H H N
Sbjct: 118 KQVERRVKMLEKRHQMLSILTPEQKAKFQELQQERMQECQDKMHKRMKKHASN 170
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 25.3 bits (56), Expect = 8.6
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 404 FQCRICMRSFSRSDHLTTHIRTH 426
C +C ++FS L H ++H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 28.6 bits (64), Expect = 9.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 406 CRICMRSFSRSDHLTTHIRT 425
C +CM FS D L H RT
Sbjct: 76 CNVCMAEFSSMDQLAEHQRT 95
>gnl|CDD|220924 pfam10986, DUF2796, Protein of unknown function (DUF2796). This
bacterial family of proteins has no known function.
Length = 161
Score = 27.6 bits (62), Expect = 9.9
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 481 NHVHQQQQHHHHHHHHH 497
+ + H HH H HH
Sbjct: 78 SSLFGDHDHDHHDHDHH 94
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.128 0.386
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,767,900
Number of extensions: 2263756
Number of successful extensions: 3193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2835
Number of HSP's successfully gapped: 154
Length of query: 510
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 409
Effective length of database: 6,457,848
Effective search space: 2641259832
Effective search space used: 2641259832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.4 bits)