RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy679
(510 letters)
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 150 bits (382), Expect = 1e-44
Identities = 74/84 (88%), Positives = 81/84 (96%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
ERPYACPVE+CDRRFS+S LTRHIRIHTGQKPFQCRICMR+FSRSDHLTTHIRTHTGEK
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 431 PFSCDVCGRKFARSDEKKRHAKVH 454
PF+CD+CGRKFARSDE+KRH K+H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 100 bits (251), Expect = 6e-26
Identities = 31/60 (51%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
++P+ C C R FSRSD LT HIR HTG+KPF C IC R F+RSD H + H +K
Sbjct: 32 QKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 140 bits (354), Expect = 2e-40
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 362 NRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHL 419
R + C C + +++S L H+R HTG+KP++C C F+RSD L
Sbjct: 4 GSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL 63
Query: 420 TTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
T H R HTG KPF C VC R F+RSD H K H
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 113 bits (286), Expect = 9e-31
Identities = 38/57 (66%), Positives = 43/57 (75%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHT 427
E+PY C E CD RF+RSDELTRH R HTG KPFQC +C RSFSRSDHL H++ H
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 95.0 bits (237), Expect = 7e-24
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 385 FSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC--DVCGRKFA 442
S RIH P C + +++S HL H+RTHTGEKP+ C + C +FA
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 443 RSDEKKRHAKVH 454
RSDE RH + H
Sbjct: 59 RSDELTRHYRKH 70
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 134 bits (339), Expect = 1e-38
Identities = 56/73 (76%), Positives = 61/73 (83%)
Query: 355 VKPRKYPNRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFS 414
++P N + RPYACPVE+CDRRFSRSDELTRHIRIHTGQKPFQCRICMR+FS
Sbjct: 1 MEPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 415 RSDHLTTHIRTHT 427
RSDHLTTHIRTHT
Sbjct: 61 RSDHLTTHIRTHT 73
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 129 bits (328), Expect = 8e-37
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 370 HERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHT 427
+ C C + +++S L H+R HTG+KP+ C C F+RSD LT H R HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 428 GEKPFSCDVCGRKFARSDEKKRHAKVHL 455
G +PF C C R F+RSD H K H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRHF 89
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 131 bits (331), Expect = 9e-37
Identities = 57/86 (66%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
E+PY C ++C+RRFSRSD+L RH R HTG KPFQC+ C R FSRSDHL TH RTHTGEK
Sbjct: 34 EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 431 PFSCDV--CGRKFARSDEKKRHAKVH 454
PFSC C +KFARSDE RH +H
Sbjct: 94 PFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 126 bits (319), Expect = 4e-35
Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHTG 428
+RP+ C C++R+ + L H R HTG+KP+QC C R FSRSD L H R HTG
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 429 EKPFSCDVCGRKFARSDEKKRHAKVH 454
KPF C C RKF+RSD K H + H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 80.3 bits (199), Expect = 2e-18
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 399 TGQKPFQC--RICMRSFSRSDHLTTHIRTHTGEKPFSCDV--CGRKFARSDEKKRHAKVH 454
+ ++PF C C + + + HL H R HTGEKP+ CD C R+F+RSD+ KRH + H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 116 bits (292), Expect = 1e-31
Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 372 RPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 431
+P+ C C R FSRSD LT HIR HTG+KPF C IC R F+RSD H P
Sbjct: 2 KPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILP 58
Query: 432 FSCDVCGRKFARSD---EKKRHAKVH 454
D +++ + K
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKL 84
Score = 89.5 bits (223), Expect = 4e-22
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHI---RTHT 427
E+P+AC + C R+F+RSDE RH I P S++ HL + +
Sbjct: 29 EKPFAC--DICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLV 85
Query: 428 GEK 430
GE+
Sbjct: 86 GER 88
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 113 bits (285), Expect = 9e-31
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 370 HERPYACPVENCDRRFSRSDELTRHIRI-HTGQKPFQC--RICMRSFSRSDHLTTHIRTH 426
C C R FS L H + H QK F C C +SF+ HL H++ H
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 427 TGEKPFSCDVCGRKF 441
+ + + C+ G
Sbjct: 64 SDTRDYICEFSGPSS 78
Score = 80.7 bits (200), Expect = 5e-19
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 398 HTGQKPFQCRI--CMRSFSRSDHLTTHIR-THTGEKPFSCD--VCGRKFARSDEKKRHAK 452
+G C C R FS +L H + H +K FSC CG+ F K H K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 453 VH 454
+H
Sbjct: 62 LH 63
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 112 bits (283), Expect = 3e-30
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
P+ C E C + FSR D+L H+R HTG KP++C+ C + + S L H+R H+ E+
Sbjct: 6 SGPHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 431 PFSCDVCGRKFARSDEKKRHAKVH 454
PF C +C S + H + H
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSH 87
Score = 99.0 bits (248), Expect = 2e-25
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
+PY C + CD + S L +H+RIH+ ++PF+C+IC + S LT H+R+HTG+
Sbjct: 34 VKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
Query: 431 PFSC 434
S
Sbjct: 92 GPSS 95
Score = 83.2 bits (207), Expect = 9e-20
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 398 HTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
P +C +C + FSR D L TH+R HTG KP+ C C A S +H ++H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 43.6 bits (104), Expect = 8e-06
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 425 THTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ P C+VCG+ F+R D+ K H + H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCH 31
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 113 bits (284), Expect = 9e-30
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRSFSRSDHLTTHI-RTHT 427
E+P+ C E C + +SR + L H+R HTG+KP+ C C ++FS + H RTH+
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 428 GEKPFSCDV--CGRKFARSDEKKRHAKVH 454
EKP+ C + C +++ ++H K
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 107 bits (269), Expect = 1e-27
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHI---RIHTGQKPFQCRIC-----MRSFSRSDHLTTH 422
E + C + F ++L HI IH +K F C +R F L H
Sbjct: 1 ETDCRW--DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 423 IRTHTGEKPFSCDV--CGRKFARSDEKKRHAKVH 454
+R HTGEKP C C + ++R + K H + H
Sbjct: 59 MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 86.5 bits (215), Expect = 3e-20
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHI-RIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHT 427
E+PY C E C + FS + + +H R H+ +KP+ C++ C + ++ L H++T
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Query: 428 G 428
G
Sbjct: 155 G 155
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 110 bits (277), Expect = 4e-29
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHTG 428
R + C C + F S +L RH +HTG+KPFQC C + FS +L TH+R HTG
Sbjct: 32 PRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 89
Query: 429 EKPFSCDV--CGRKFARSDEKKRHAKVH 454
++P+ C C +KFA+S K H H
Sbjct: 90 DRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 109 bits (275), Expect = 9e-29
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 369 VHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTG 428
+ R ACP + C + F + + +H+ H G + C C ++F S L H HTG
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG 59
Query: 429 EKPFSCDV--CGRKFARSDEKKRHAKVH 454
EKPF C CG++F+ + H ++H
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 99.9 bits (250), Expect = 2e-25
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHTG 428
E+P+ C E C +RFS L H+RIHTG +P+ C C + F++S +L +HI TH
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Query: 429 EKPF 432
K
Sbjct: 120 AKNN 123
Score = 58.3 bits (142), Expect = 9e-11
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQ 405
+RPY CP + C+++F++S L HI H K Q
Sbjct: 90 DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 107 bits (269), Expect = 2e-28
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 374 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRSFSRSDHLTTHIRTHTGEKP 431
Y C ENC + F + ++L H HT Q P++C C + FS L H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 432 FSCDVCGRKFARSDE-KKRHAKVH 454
D C K A+ H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 87.7 bits (218), Expect = 1e-21
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHI-RTH 426
+ PY CP E CD+RFS L RH ++H G + C H+ H
Sbjct: 29 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 106 bits (268), Expect = 3e-28
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGE- 429
AC E C + F L RH H+G+KP+ C +C F R D ++ H+R+H G
Sbjct: 5 SSGVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 430 -KPFSCDVCGRKFARSDEKKRHAK 452
KP+ C CG+ F+R D H K
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIK 86
Score = 85.6 bits (213), Expect = 1e-20
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 398 HTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+G C IC + F HL H +H+GEKP+SC VCG +F R D H + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 83.3 bits (207), Expect = 8e-20
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTG--QKPFQCRICMRSFSRSDHLTTHI-RTHT 427
E+PY+CPV C RF R D ++ H+R H G KP+ C+ C + FSR DHL HI + H+
Sbjct: 33 EKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Query: 428 GEK 430
G
Sbjct: 91 GPS 93
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 106 bits (268), Expect = 5e-28
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
++ + C + C R F++S L H R HT ++P+ C IC ++F R DHL H H+ EK
Sbjct: 15 KKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 431 PFSCDVCGRKFARSDEKKRHAKVH 454
PF C CG+ F +S H +H
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLH 96
Score = 92.9 bits (232), Expect = 4e-23
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 388 SDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEK 447
S + +K F C+ C R F++S +L H RTHT E+P++CD+C + F R D
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 448 KRHAKVH 454
+ H +H
Sbjct: 62 RDHRYIH 68
Score = 92.1 bits (230), Expect = 8e-23
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
ERPY C + C + F R D L H IH+ +KPF+C+ C + F +S L H H
Sbjct: 43 ERPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTS 100
Query: 431 PFSC 434
+
Sbjct: 101 SPTA 104
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 108 bits (271), Expect = 5e-28
Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 11/95 (11%)
Query: 371 ERPY----ACPVENCDRR---FSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTT 421
P C E C R F +L HIR+HTG+KPF C C + F+RS++L
Sbjct: 51 GGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKI 110
Query: 422 HIRTHTGEKPFSCDV--CGRKFARSDEKKRHAKVH 454
H RTHTGEKPF C+ C R+FA S ++K+H VH
Sbjct: 111 HKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 105 bits (264), Expect = 5e-27
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQ---------CRICMRSFSRSDHLTT 421
+ ++CDR FS EL H+ + P Q C +SF L
Sbjct: 23 QLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 422 HIRTHTGEKPFSCDV--CGRKFARSDEKKRHAKVH 454
HIR HTGEKPF C CG+ FARS+ K H + H
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 102 bits (257), Expect = 5e-26
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 369 VH--ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIR 424
VH E+P+ CP C + F+RS+ L H R HTG+KPF+C C R F+ S H+
Sbjct: 84 VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Query: 425 THTGEKPFSCD 435
HT +K
Sbjct: 144 VHTSDKSGPSS 154
Score = 85.4 bits (212), Expect = 6e-20
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 9/84 (10%)
Query: 380 NCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS------ 433
+ + I Q + C R+FS L TH+ P
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 434 ---CDVCGRKFARSDEKKRHAKVH 454
C G+ F + H +VH
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVH 85
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 107 bits (270), Expect = 2e-27
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRSFSRSDHLTTHIRTHTG 428
+ Y C +C ++++ +L H+ HTG+KPF C C + F+ HLT H THTG
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69
Query: 429 EKPFSCD--VCGRKFARSDEKKRHAKVH 454
EK F+CD C +F K+H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 101 bits (254), Expect = 3e-25
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRSFSRSDHLTTHIRTHTG 428
E+P+ C E C++ F+ LTRH HTG+K F C C F+ ++ H
Sbjct: 40 EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99
Query: 429 EK--PFSCDV--CGRKFARSDEKKRHAKVH 454
K + C CG+ F + ++ K H H
Sbjct: 100 IKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 97.7 bits (244), Expect = 9e-24
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 362 NRPSKTPVHER--------PYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC--RICMR 411
+ H Y C ENC + F + ++L H HT Q P++C C +
Sbjct: 85 TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDK 144
Query: 412 SFSRSDHLTTHIRTHTG---EKPFSCDVCGRKFARSDEKKRHAKVH 454
FS L H + H G +K SC G+ + + K A+ H
Sbjct: 145 RFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW--TLYLKHVAECH 188
Score = 81.9 bits (203), Expect = 3e-18
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 394 HIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHTGEKPFSCD--VCGRKFARSDEKKR 449
+ K + C C +++++ L H+ HTGEKPF C C + F R
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 450 HAKVH 454
H+ H
Sbjct: 63 HSLTH 67
Score = 63.8 bits (156), Expect = 5e-12
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSR-SDHLTTHIRTHT 427
+ PY CP E CD+RFS L RH ++H G + C + +L H
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 102 bits (258), Expect = 1e-26
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
++ Y C C + F+ + RH+ +H G +P+ C +C + F HL H++ HTG K
Sbjct: 8 DKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 431 PFSCDVCGRKFARSDEKKRHAKVHLKQR 458
P+ C++C ++F D +
Sbjct: 65 PYECNICAKRFMWRD--------SFHRH 84
Score = 94.0 bits (235), Expect = 2e-23
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
RPY C C ++F L H++IHTG KP++C IC + F D H + K
Sbjct: 35 LRPYGC--GVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTK 90
Query: 431 PFSCDVCGRKFARS 444
+ + +
Sbjct: 91 SYEAAKAEQNTTEA 104
Score = 79.8 bits (198), Expect = 2e-18
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 396 RIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+G K + C+ C +SF+ H+ H G +P+ C VCG+KF H K+H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 57.5 bits (140), Expect = 1e-10
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTT 421
+PY C C +RF D H + + K ++ ++ + + ++
Sbjct: 63 IKPYEC--NICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 105 bits (264), Expect = 2e-26
Identities = 43/84 (51%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
E+PYACP C + FS+ L H R HTG+KP++C C +SFSR D+L TH RTHTGEK
Sbjct: 103 EKPYACPE--CGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK 160
Query: 431 PFSCDVCGRKFARSDEKKRHAKVH 454
P+ C CG+ F+R D H + H
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTH 184
Score = 104 bits (262), Expect = 3e-26
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
E+PY C C + FS +LTRH R HTG+KP++C C +SFS+ +L H RTHTGEK
Sbjct: 47 EKPYKC--PECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104
Query: 431 PFSCDVCGRKFARSDEKKRHAKVH 454
P++C CG+ F++ + H + H
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTH 128
Score = 103 bits (260), Expect = 5e-26
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
E+PYAC C + FSRSD L H R HTG+KP++C C +SFS LT H RTHTGEK
Sbjct: 19 EKPYAC--PECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 431 PFSCDVCGRKFARSDEKKRHAKVH 454
P+ C CG+ F++ + H + H
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTH 100
Score = 103 bits (259), Expect = 7e-26
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
E+PY C C + FS+ L H R HTG+KP+ C C +SFS+ HL H RTHTGEK
Sbjct: 75 EKPYKC--PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Query: 431 PFSCDVCGRKFARSDEKKRHAKVH 454
P+ C CG+ F+R D H + H
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTH 156
Score = 97.1 bits (243), Expect = 1e-23
Identities = 30/70 (42%), Positives = 39/70 (55%)
Query: 385 FSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARS 444
S + G+KP+ C C +SFSRSDHL H RTHTGEKP+ C CG+ F+
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 445 DEKKRHAKVH 454
+ RH + H
Sbjct: 63 KDLTRHQRTH 72
Score = 87.1 bits (217), Expect = 4e-20
Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
E+PY C C + FSR D L H R HTG+KP++C C +SFSR D L H RTHTG+K
Sbjct: 131 EKPYKC--PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Query: 431 P 431
Sbjct: 189 T 189
Score = 58.2 bits (142), Expect = 4e-10
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 412 SFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
S S GEKP++C CG+ F+RSD H + H
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH 44
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 101 bits (254), Expect = 6e-26
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIR---THT 427
CP C ++F L H R HTG+KPF+C C + + R ++L H +
Sbjct: 5 SSGVECP--TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 428 GEKPFSCDVCGRKFARSDEKKRHAKVH 454
E+ F+C VC F R E + H H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 98.0 bits (245), Expect = 1e-24
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIR---IHTGQKPFQCRICMRSFSRSDHLTTHIRTHT 427
E+P+ CP C + + R + L H ++ ++ F C +C +F R L H+ +HT
Sbjct: 33 EKPFECP--KCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHT 90
Query: 428 GEKPFSCDVCGRKFARSDEKKRH-AKVH 454
GE P+ C C ++F + + + H K+H
Sbjct: 91 GEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 81.8 bits (203), Expect = 5e-19
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTH-IRTHTGE 429
E+ + C V C F R EL H+ HTG+ P++C C + F + L +H I+ H+G
Sbjct: 64 EQVFTCSV--CQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Query: 430 K 430
Sbjct: 122 S 122
Score = 76.8 bits (190), Expect = 4e-17
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 398 HTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRH 450
+G +C C + F +L H R HTGEKPF C CG+ + R + H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 40.2 bits (95), Expect = 2e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 426 HTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+G C C +KF K H + H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKH 30
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 99.0 bits (248), Expect = 1e-25
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 374 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 433
+ C + C + F RS L+ H+ IH+ +P+ C+ C + F + + H HTGEKP
Sbjct: 2 FDC--KICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 434 CDVCGRKFARSDEKKRHAKVH 454
C VCG+ F++S H++ H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKH 80
Score = 82.5 bits (205), Expect = 1e-19
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTG 428
RPY C + C +RF + ++ +H IHTG+KP +C++C ++FS+S +L TH R HTG
Sbjct: 27 TRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 95.7 bits (239), Expect = 2e-24
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 391 LTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGE--KPFSCDVCGRKFARSDEKK 448
R H+G+KP++C IC F++S + HI E F C C AR +
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 449 RH 450
H
Sbjct: 63 VH 64
Score = 94.1 bits (235), Expect = 6e-24
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTG--QKPFQCRICMRSFSRSDHLTTHIRT-HT 427
E+PY C + C RF++S + HI F C C +R L H+R H+
Sbjct: 13 EKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Query: 428 GEKPFS 433
P S
Sbjct: 71 YSGPSS 76
Score = 60.2 bits (147), Expect = 6e-12
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 418 HLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ RTH+GEKP+ C +C +F +S K H
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK 38
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 94.9 bits (237), Expect = 5e-24
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTG----QKPFQCRICMRSFSRSDHLTTHIRTH 426
E+PYAC +CD+ F + L H + + F C C ++F+R + + H
Sbjct: 13 EKPYACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Query: 427 TGEKPFSCDVCGRKF 441
G + G
Sbjct: 71 AGPDGVEGENSGPSS 85
Score = 85.7 bits (213), Expect = 8e-21
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 391 LTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGE----KPFSCDVCGRKFARSDE 446
R HTG+KP+ C C ++F + L H + + F C CG+ F R +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 447 KKRHAKVH 454
RHA
Sbjct: 63 MARHADNC 70
Score = 53.3 bits (129), Expect = 2e-09
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 418 HLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ RTHTGEKP++C C + F + H K +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 93.8 bits (234), Expect = 7e-24
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 396 RIHTGQKPFQCRICMRSFSRSDHLTTHIRT--HTGEKPFSCDVCGRKFARSDEKKRHAKV 453
G+ ++C++C R ++ + H T K + C C ++F R D H K+
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 454 H 454
Sbjct: 63 I 63
Score = 87.2 bits (217), Expect = 2e-21
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRI--HTGQKPFQCRICMRSFSRSDHLTTHIRTHTG 428
E Y C V C R ++ RH K + C C + F+R D++T H++
Sbjct: 8 EHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 91.3 bits (227), Expect = 7e-23
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 388 SDELTRHIRIHTGQKPFQCRI--CMRSFSRSDHLTTHIRTHTGEKPFSCDV--CGRKFAR 443
S + + + C C +++ +S HL H RTHTGEKPFSC C R+FAR
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 444 SDEKKRHAKVH 454
SDE RH + H
Sbjct: 62 SDELSRHRRTH 72
Score = 87.1 bits (216), Expect = 2e-21
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 358 RKYPNRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRSFSR 415
+ P R + C C + + +S L H R HTG+KPF C C R F+R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 416 SDHLTTHIRTH 426
SD L+ H RTH
Sbjct: 62 SDELSRHRRTH 72
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 91.0 bits (227), Expect = 8e-23
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 388 SDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEK 447
H + KP++C C SF +L +H HTGEKP+ C++CG +F R
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 448 KRHAKVH 454
K H ++H
Sbjct: 62 KTHTRIH 68
Score = 89.0 bits (222), Expect = 3e-22
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
++PY C + C F L H +HTG+KP++C IC F+R +L TH R H+GEK
Sbjct: 15 DKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Query: 431 PF 432
P+
Sbjct: 73 PY 74
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 89.5 bits (223), Expect = 2e-22
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 372 RPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHI-RTHTGEK 430
R + C V C R F+R + L RH R HT +KP+ C +C R+F+R D L H + H+G
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 85.2 bits (212), Expect = 7e-21
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 402 KPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHA-KVH 454
+ F C +C R+F+R +HL H R+HT EKP+ C +C R F R D RHA K+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 89.5 bits (223), Expect = 2e-22
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 391 LTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRH 450
+ IH+G+KP+ C C ++FSRS L H R HTGEKP+ C CG+ F+++ H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 451 AKVH 454
++H
Sbjct: 62 QRIH 65
Score = 87.1 bits (217), Expect = 2e-21
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
E+PY C C + FSRS L +H R+HTG+KP++C C ++FS++ L H R HT
Sbjct: 12 EKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Query: 431 PF 432
Sbjct: 70 SS 71
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 89.0 bits (222), Expect = 5e-22
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 388 SDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEK 447
S R ++ ++C C +SFS S L+ H RTHTGEKP+ CD CG+ F +
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 448 KRHAKVH 454
H +VH
Sbjct: 63 IGHHRVH 69
Score = 86.7 bits (216), Expect = 3e-21
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
R Y C + C + FS S +L++H R HTG+KP++C C ++F + HL H R HTG
Sbjct: 16 RRRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Query: 431 PF 432
P
Sbjct: 74 PS 75
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 86.4 bits (215), Expect = 3e-21
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
P C C S L H RIH +PF+C C + +L+ H++ G+
Sbjct: 7 GHPEKC--SECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
Query: 431 PFSC 434
Sbjct: 65 SGPS 68
Score = 81.8 bits (203), Expect = 1e-19
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 396 RIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ P +C C S S L H R H ++PF C+ C + +H K
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 84.4 bits (209), Expect = 2e-20
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 398 HTGQKPFQCRICMRSFSRSDHLTTHIRTHT---GEKPFSCDVCGRKFARSDEKKRHAKVH 454
+G QC IC + + L H R H F C+ CG++F + D H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 77.8 bits (192), Expect = 4e-18
Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 5/73 (6%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHT---GQKPFQCRICMRSFSRSDHLTTHIRTHT 427
C + C + L H R H F C C + F + D + H
Sbjct: 5 SSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 428 GEKPFSCDVCGRK 440
+
Sbjct: 63 PALLLAPQESSGP 75
Score = 46.2 bits (110), Expect = 6e-07
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 426 HTGEKPFSCDVCGRKFARSDEKKRHAKVHLKQRSKK 461
+G C++CG + H + H + +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAAL 37
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 77.6 bits (192), Expect = 2e-18
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHI-RTHTGEKPFSCDVCGRKFA 442
+ KP+ C+ C + FSR DHL HI + HT E+P C V +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 58.4 bits (142), Expect = 2e-11
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRSFS 414
+PY C ++C + FSR D L HI ++HT ++P +C++ + S
Sbjct: 10 GKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAK-VH 454
+ + + KP+ C CG+ F+R D H K VH
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 76.6 bits (189), Expect = 5e-18
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 394 HIRIHTGQKPFQC--RICMRSFSRSDHLTTHIRTHTGEKPFSCD 435
TG+KPF C C FSRSD L+ H R+H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 74.3 bits (183), Expect = 3e-17
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+AC C RFSRSDEL+RH R H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 62.3 bits (152), Expect = 6e-13
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 421 THIRTHTGEKPFSCDV--CGRKFARSDEKKRHAKVH 454
+ + TGEKPF+C CG +F+RSDE RH + H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 76.5 bits (188), Expect = 2e-17
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 369 VHERPYACPVENCDRRFSRSDELTRHI-RIHTGQKPFQCRICM--------RSFSRSDHL 419
+ E + P ++CDR FS EL H+ H G +C +SF L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 420 TTHIRTHTGEKPFSC 434
HIR HTGEK
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 51.5 bits (123), Expect = 1e-08
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 397 IHTGQKPFQCRICMRSFSRSDHLTTHI-RTHTGEKPFSCDVC--------GRKFARSDEK 447
I Q + C R+FS L TH+ H G + VC G+ F +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 448 KRHAKVH 454
H +VH
Sbjct: 79 VNHIRVH 85
Score = 32.6 bits (74), Expect = 0.050
Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 425 THTGEKPFSCDVCGRKFARSDEKKRH-AKVHLKQRSKKE 462
+ C R F+ E H H+ +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 5e-17
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G+KP++C C ++F R HL H R HTG +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 50.6 bits (122), Expect = 7e-09
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F R L H RIHTG +P
Sbjct: 10 EKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 45.2 bits (108), Expect = 5e-07
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + +GEKP+ C CG+ F R H ++H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 72.9 bits (180), Expect = 1e-16
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KPF+C C +SFS S L TH R HTGEKP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 5e-08
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C C + FS S +L H RIHTG+KP
Sbjct: 10 EKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKPF C CG+ F+ S + H ++H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.5 bits (179), Expect = 1e-16
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G+KPF+C+ C ++F ++ HL +H+R HTGEKP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 2e-08
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C + C + F ++ L H+RIHTG+KP
Sbjct: 10 EKPFKC--KECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + +GEKPF C CG+ F ++ H ++H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 72.6 bits (179), Expect = 1e-16
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KPF+C C +S+++ HLT H R HTGEKP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 49.1 bits (118), Expect = 3e-08
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C C + +++ LT+H R+HTG+KP
Sbjct: 10 EKPFKC--GECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKPF C CG+ + + +H +VH
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.1 bits (178), Expect = 2e-16
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C + F R+ HL H HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F R+ L RH IHTG+KP
Sbjct: 10 EKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 45.5 bits (109), Expect = 5e-07
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C CG+ F R+ RH +H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 2e-16
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
G+KP+ C C ++FS +L H+RTH+GEKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 47.9 bits (115), Expect = 6e-08
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + FS L H+R H+G+KP
Sbjct: 10 EKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + GEKP+ C CG+ F+ H + H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 2e-16
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+ P++C C ++FSR L +H RTH GEKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E PY C C + FSR +L H R H G+KP
Sbjct: 10 ENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGE P+ C CG+ F+R + H + H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.7 bits (177), Expect = 2e-16
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KPF+C C ++F+ +L H RTHTGEKP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C C + F+ L H R HTG+KP
Sbjct: 10 EKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKPF C C + F H + H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 2e-16
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCD 435
TG+KPF+C IC +SF L H HT EKP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 48.6 bits (117), Expect = 4e-08
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKPF CD+CG+ F RH+ VH
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 48.3 bits (116), Expect = 4e-08
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C + C + F L RH +HT +KP
Sbjct: 10 EKPFKC--DICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 2e-16
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C++C ++F++ HL H +THTGEKP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 8e-08
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C + C + F++ L +H + HTG+KP
Sbjct: 10 EKPYEC--KVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C VC + F + +H K H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 3e-16
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G+KPFQC C + F+++ HL +H R HTGEKP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 6e-08
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C E C +RF+++ L H R+HTG+KP
Sbjct: 10 EKPFQC--EECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 5e-07
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + +GEKPF C+ CG++F ++ H +VH
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 71.6 bits (176), Expect = 3e-16
Identities = 20/33 (60%), Positives = 21/33 (63%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTH 426
R TG KPFQC C RSFSRSDHL H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 59.3 bits (144), Expect = 5e-12
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 422 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVHL 455
R TG KPF C C R F+RSD H K H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 45.8 bits (109), Expect = 3e-07
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIH 398
+P+ CP CDR FSRSD L H + H
Sbjct: 9 IKPFQCPD--CDRSFSRSDHLALHRKRH 34
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 71.7 bits (177), Expect = 3e-16
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG KP+ C C ++F +L H RTHTGE S
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 46.3 bits (111), Expect = 3e-07
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
+PY C C + F L H R HTG+
Sbjct: 10 MKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TG KP+ C+ CG+ F H + H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 71.4 bits (176), Expect = 3e-16
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG KP+ C C ++FS L H R+HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
+PY C C + FS +L H R HTG KP
Sbjct: 10 VKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TG KP+ C C + F+ + H + H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 3e-16
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C++C ++F S HL H H+GE+P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 49.4 bits (119), Expect = 2e-08
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C + C + F S L +H +H+G++P
Sbjct: 10 EKPYKC--QVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 422 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ TGEKP+ C VCG+ F S +H VH
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 71.0 bits (175), Expect = 4e-16
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+K ++C C + FSR+ L+ H + HTGEKP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 2e-08
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+ Y C C + FSR+ +L++H +IHTG+KP
Sbjct: 10 EKRYKC--NECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEK + C+ CG+ F+R+ + +H K+H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 4e-16
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G+KP++C C + F+++ HLT H R HTGEKP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 48.6 bits (117), Expect = 3e-08
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F+++ LT H RIHTG+KP
Sbjct: 10 EKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + +GEKP+ C+ CG+ F ++ H ++H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 4e-16
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCD 435
TG+KP+ C +C ++F S HL H+R HT E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 48.7 bits (117), Expect = 3e-08
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY+C V C + F S L +H+R+HT +
Sbjct: 10 EKPYSCNV--CGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 422 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ TGEKP+SC+VCG+ F S +H +VH
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 4e-16
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G+KPF+C C + F+++ L +H R HTGEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 8e-08
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C E C +RF+++ +L H R+HTG+KP
Sbjct: 10 EKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + +GEKPF C+ CG++F ++ + H +VH
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 4e-16
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
G+K ++C +C + FS+S HL TH R HTGEKP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 2e-08
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+ Y C + C + FS+S L H R+HTG+KP
Sbjct: 10 EKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 2e-07
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + GEK + CDVCG++F++S + H +VH
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 5e-16
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG++P +C C +SF +S HL H R HTGEKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
ERP+ C C + F +S L +H RIHTG+KP
Sbjct: 10 ERPHKC--NECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGE+P C+ CG+ F +S +H ++H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 5e-16
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+K + C+ C +SFSR+ L H R H+GEKP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 49.4 bits (119), Expect = 2e-08
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+ Y C + C + FSR+ L +H R+H+G+KP
Sbjct: 10 EKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEK ++C CG+ F+R+ +H ++H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 5e-16
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C + F+++ HL H HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 6e-08
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F+++ L RH IHTG+KP
Sbjct: 10 EKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ CG+ F ++ RH +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 6e-16
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G++P+ C C ++F R HL H++ H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 52.5 bits (127), Expect = 2e-09
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
ERPY C C + F R L H++ H +K
Sbjct: 10 ERPYGC--NECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 422 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ +GE+P+ C+ CG+ F R H K H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 70.6 bits (174), Expect = 6e-16
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TGQKPF+C C +SF +L TH R HTGEK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 47.2 bits (113), Expect = 1e-07
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
++P+ C +C + F L H RIHTG+K
Sbjct: 10 QKPFEC--THCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TG+KPF C CG+ F H ++H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 6e-16
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP +CR C +SFS + L H R HTGE P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 47.5 bits (114), Expect = 9e-08
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C C + FS + +L H RIHTG+ P
Sbjct: 10 EKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP C CG+ F+ + + H ++H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 70.7 bits (174), Expect = 7e-16
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCG 438
+G+KPF+C C + F + +H R+H+GEKP G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 46.8 bits (112), Expect = 2e-07
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C E C + F + + H R H+G+KP
Sbjct: 10 EKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + +GEKPF C+ CG+ F + + H + H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 70.2 bits (173), Expect = 7e-16
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C ++F+ +L H RTHTGE S
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 46.7 bits (112), Expect = 2e-07
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F+ L H R HTG+
Sbjct: 10 EKPYEC--NECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ C + F H + H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 70.2 bits (173), Expect = 7e-16
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C+ C ++FS++ HL H R HTGEKP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 6e-08
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCR 407
E+PY C + C + FS++ L +H R+HTG+KP
Sbjct: 10 EKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 43.6 bits (104), Expect = 2e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C CG+ F+++ +H +VH
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 70.3 bits (173), Expect = 8e-16
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G+KP++C C ++F L H RTH G S
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F L H R H G
Sbjct: 10 EKPYEC--NECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + +GEKP+ C+ CG+ F H + H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.2 bits (173), Expect = 8e-16
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP+ C C ++F L H R HTGEKP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C E C + F +L H RIHTG+KP
Sbjct: 10 EKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP++C+ CG+ F + + H ++H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 70.2 bits (173), Expect = 9e-16
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KPF+C C + FSR L H + HTGEKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 8e-08
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C C + FSR L H ++HTG+KP
Sbjct: 10 EKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 5e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKPF C CG+ F+R H K+H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.2 bits (173), Expect = 9e-16
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C + F+++ HL H R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 47.5 bits (114), Expect = 9e-08
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F+++ L H RIHTG KP
Sbjct: 10 EKPYKC--NECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ CG+ F ++ H ++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.2 bits (173), Expect = 9e-16
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG++ ++C C ++F+R L H R HTGEKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 5e-08
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
ER Y C C + F+R L H RIHTG+KP
Sbjct: 10 ERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGE+ + C CG+ FAR H ++H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.3 bits (173), Expect = 9e-16
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C IC +SF++ L H + HTGEKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F++ +L H +IHTG+KP
Sbjct: 10 EKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C +CG+ F + + H ++H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 69.9 bits (172), Expect = 1e-15
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TGQ+P++C C ++F L H R+HTGEKP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
+RPY C C + F L H R HTG+KP
Sbjct: 10 QRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TG++P+ C CG+ F H + H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.8 bits (172), Expect = 1e-15
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C ++F+R L H ++HTGE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C +C + F+R L H + HTG++
Sbjct: 10 EKPYKC--SDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C CG+ F R H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 69.9 bits (172), Expect = 1e-15
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP+ C+ C +SF + L H R H+GEKP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 48.7 bits (117), Expect = 4e-08
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C + C + F + L +H R+H+G+KP
Sbjct: 10 EKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP++C CG+ F + +H +VH
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 69.8 bits (172), Expect = 1e-15
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C ++F++ +LT H R HTGEKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 6e-08
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F++ LT+H RIHTG+KP
Sbjct: 10 EKPYRC--GECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C CG+ FA+ +H ++H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 2e-15
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C + F+++ HL H HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 4e-08
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F+++ L RH IHTG+KP
Sbjct: 10 EKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 5e-07
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ CG+ F ++ RH +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 2e-15
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG K F+C C ++F+R L+ H + HTGEKP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
+ + C C + F+R L+ H +IHTG+KP
Sbjct: 10 GKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TG K F C CG+ F R H K+H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 69.5 bits (171), Expect = 2e-15
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 433
G+KP++C C F + HL H+ HTG P S
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 48.7 bits (117), Expect = 4e-08
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPF 404
E+PY C E C RF + L H+ IHTG P
Sbjct: 9 EKPYKC--ETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 48.3 bits (116), Expect = 4e-08
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 422 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ GEKP+ C+ CG +F + + H +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 69.2 bits (170), Expect = 2e-15
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 372 RPYACPVENCDRRFSRSDELTRHIRIHTGQK 402
RP+ C C +RF+RSDEL RH R HTG+K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 43.8 bits (104), Expect = 2e-06
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 430 KPFSCDV--CGRKFARSDEKKRHAKVHLKQR 458
+PF C CG++F RSDE +RH + H ++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 2e-15
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG KP+ C C ++FS LTTH HTGEKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
+PY C C + FS LT H IHTG+KP
Sbjct: 10 VKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TG KP+ C+ CG+ F+ H +H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 2e-15
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KPF C C ++FS L H R HTGEKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C +C + FS L +H RIHTG+KP
Sbjct: 10 EKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKPF C CG+ F+ +H ++H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 2e-15
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C ++FS++ L H R HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 6e-08
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + FS++ +L RH RIHTG+KP
Sbjct: 10 EKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ CG+ F+++ + RH ++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 2e-15
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C +C ++FS L+ H R H+G+KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 47.5 bits (114), Expect = 9e-08
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + FS L+ H RIH+G+KP
Sbjct: 10 EKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 422 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ TGEKP+ C VCG+ F+ H ++H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 2e-15
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C + F+++ HL H HTGEKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 3e-08
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
++PY C C + F+++ L RH IHTG+KP
Sbjct: 10 KKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TG+KP+ C+ CG+ F ++ RH +H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 2e-15
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCD 435
+G+KP++C C + + R L H R HTGEK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 48.3 bits (116), Expect = 5e-08
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + + R +L H R+HTG+K
Sbjct: 10 EKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 44.8 bits (107), Expect = 7e-07
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + +GEKP+ C CG+ + R + H +VH
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 2e-15
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP+ C C +SF + HL H R HTGEKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 5e-08
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F + L RH RIHTG+KP
Sbjct: 10 EKPYIC--NECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ CG+ F + RH ++H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G+KP+ C C ++F S L H R HTGEKP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 4e-08
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCR 407
E+PY C + C + F S EL RH RIHTG+KP
Sbjct: 10 EKPYVC--DYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 7e-07
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + +GEKP+ CD CG+ F S E RH ++H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C +C ++FS LT H R H+GEKP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 48.7 bits (117), Expect = 4e-08
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C + C + FS LT+H R+H+G+KP
Sbjct: 10 EKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ CDVC + F+ +H +VH
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C + F + +L+ H R HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F + L+RH RIHTG+KP
Sbjct: 10 EKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ CG+ F + RH ++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G+KP+ C C ++FS+ L+ H RTHTGEKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + FS+ L+ H R HTG+KP
Sbjct: 10 EKPYGC--NECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + +GEKP+ C+ CG+ F++ H + H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C ++F L H TH+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F L H H+G+KP
Sbjct: 10 EKPYKC--NECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 42.1 bits (100), Expect = 7e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ CG+ F H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 68.7 bits (169), Expect = 2e-15
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 433
G+KP+ C IC F L +H+R HTG P S
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 50.2 bits (121), Expect = 1e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 422 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ GEKP+ C++CG +F K H ++H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 49.8 bits (120), Expect = 1e-08
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPF 404
E+PY C E C RF L H+RIHTG P
Sbjct: 9 EKPYPC--EICGTRFRHLQTLKSHLRIHTGSGPS 40
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 3e-15
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C ++FS LTTH HTG+KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + FS LT H IHTG+KP
Sbjct: 10 EKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ CG+ F+ H +H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 3e-15
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C + ++ +L H + HTGE+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 48.7 bits (117), Expect = 3e-08
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C E C + ++ L H ++HTG++P
Sbjct: 10 EKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ CG+ + H KVH
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 3e-15
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C + F+++ HL H R HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 47.9 bits (115), Expect = 6e-08
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F+++ L RH R+HTG KP
Sbjct: 10 EKPYKC--NECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ CG+ F ++ RH +VH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 3e-15
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C ++F +LTTH HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 7e-08
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F LT H IHTG+KP
Sbjct: 10 EKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ CG+ F H +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 4e-15
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG++P+ C +C ++F+ +L H + HTGEKP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
ERPY C V C + F+ L +H +IHTG+KP
Sbjct: 10 ERPYICTV--CGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGE+P+ C VCG+ F +H K+H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 4e-15
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+ +KP++C C + ++R +L H R H GEK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C E+C + ++R L H R+H G+K
Sbjct: 10 EKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 46.3 bits (111), Expect = 2e-07
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + + EKP+ C+ CG+ + R H +VH
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 4e-15
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+ PF C C + F+ +L H + HTGE+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 47.5 bits (114), Expect = 1e-07
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E P+ C C + F+ L H +IHTG++P
Sbjct: 10 ENPFIC--SECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGE PF C CG+ F H K+H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.0 bits (167), Expect = 5e-15
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C +SF + L H R HTGE P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 47.2 bits (113), Expect = 1e-07
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C +C + F + +L H RIHTG+ P
Sbjct: 10 EKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C CG+ F + + H ++H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.0 bits (167), Expect = 5e-15
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C ++F + T H R HTG++P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 48.7 bits (117), Expect = 4e-08
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F + T+H R+HTGQ+P
Sbjct: 10 EKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 44.9 bits (107), Expect = 7e-07
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C CG+ F + +H ++H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 5e-15
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C +C +SF LT H R HTGEKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C + C + F LT H RIHTG+KP
Sbjct: 10 EKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ CDVC + F H ++H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 6e-15
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
G+K F+C C ++F++S LT H R HTGEKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 7e-08
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
++ + C C + F++S LT H RIHTG+KP
Sbjct: 10 KKLFKC--NECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + G+K F C+ C + F +S H ++H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.6 bits (166), Expect = 7e-15
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG KP+QC C ++FS++ L H R HTGEKP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 7e-08
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
+PY C C + FS++ +L RH R+HTG+KP
Sbjct: 10 GKPYQC--NECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TG KP+ C+ CG+ F+++ + RH +VH
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 67.6 bits (166), Expect = 7e-15
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C + F L TH HTGEKP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C E C + F +L H +HTG+KP
Sbjct: 10 EKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C+ CG+ F + H VH
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 67.6 bits (166), Expect = 7e-15
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCD 435
TG+KPFQC+ C +FS S L H+R+H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 47.6 bits (114), Expect = 1e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKPF C CG F+ S +H + H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 47.2 bits (113), Expect = 1e-07
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C + C FS S L +H+R H P
Sbjct: 10 EKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 8e-15
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP+ C C ++F+ +L H + HT +KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 47.9 bits (115), Expect = 7e-08
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F+ L +H +IHT QKP
Sbjct: 10 EKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 44.8 bits (107), Expect = 8e-07
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C CG+ F +H K+H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 8e-15
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C ++F+ +L TH + HTGEKP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 2e-07
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + F+ L H +IHTG+KP
Sbjct: 10 EKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C CG+ F H K+H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 67.2 bits (165), Expect = 1e-14
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 433
G+KP++C C ++FS+ L HIR HTG P S
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 422 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ GEKP+ CD CG+ F++ H +VH
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 44.1 bits (105), Expect = 1e-06
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPF 404
E+PY C + C + FS+ L HIR+HTG P
Sbjct: 9 EKPYRC--DQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 67.2 bits (165), Expect = 1e-14
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 396 RIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G+ P++C C ++F+R D L +H RTH GE S
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 49.0 bits (118), Expect = 2e-08
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E PY C C + F+R D+L H R H G+
Sbjct: 8 ENPYEC--SECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 424 RTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+GE P+ C CG+ F R D+ H + H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP++C C +SF+ L H + HTGE+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C +C + F+ L H + HTG++
Sbjct: 10 EKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP+ C CG+ F + H K H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG++ ++C C ++F + L+ H R H GEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
ER Y C C + F + L+ H RIH G+KP
Sbjct: 10 ERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGE+ + C CG+ F + H ++H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 2e-14
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
G+KP+QC C +SFS S LT H THT EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 47.5 bits (114), Expect = 7e-08
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY C C + FS S LT+H HT +KP
Sbjct: 10 EKPYQC--SECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + GEKP+ C CG+ F+ S +H H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 2e-14
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G++PF+C C + F R HL H+R H+ EK
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
ERP+ C C + F R L H+R+H+ +K
Sbjct: 10 ERPFKC--NECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + +GE+PF C+ CG+ F R H ++H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 66.0 bits (162), Expect = 2e-14
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+ P++C C + FSR D L +H +TH+G+ S
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E PY C C + FSR D+L H + H+GQ
Sbjct: 10 ENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGE P+ C CG+ F+R D+ H K H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 3e-14
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G+KP++C+ C ++F + HL H R HTGE+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
++PY C + C + F + L +H R+HTG++
Sbjct: 10 KKPYEC--KECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + +G+KP+ C C + F + +H +VH
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 65.2 bits (160), Expect = 4e-14
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 396 RIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G+KPF C C ++FS +L H +TH EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 47.9 bits (115), Expect = 6e-08
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P+ C C++ FS L H + H +KP
Sbjct: 8 EKPFGC--SCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 38.3 bits (90), Expect = 2e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 424 RTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+GEKPF C C + F+ H + H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 65.1 bits (158), Expect = 7e-14
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 374 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
Y C E C R + L +HIR HT +P+ C C SF +LT H+++ K
Sbjct: 2 YIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 55.5 bits (133), Expect = 2e-10
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 404 FQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ C C + L HIRTHT +P+ C C F +H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 27.0 bits (59), Expect = 2.5
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 434 CDVCGRKFARSDEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVH 484
C+ CG + + K+H + H R + + + ++ H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 64.5 bits (158), Expect = 8e-14
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
G++ +C C + F ++ + H R HTGEKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
ER + C +C + F ++ +H RIHTG+KP
Sbjct: 10 ERGHRC--SDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 2e-06
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + GE+ C CG+ F ++ +H ++H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 9e-14
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
TG+KP +C C ++F L H RTH +K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+P C C + F +L H R H K
Sbjct: 10 EKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 42.5 bits (101), Expect = 6e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + TGEKP C CG+ F + H + H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 64.5 bits (158), Expect = 1e-13
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
G P++C C +SFS L H R HT EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
PY C C++ FS L H R+HT +KP
Sbjct: 10 VNPYKC--SQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + G P+ C C + F+ H ++H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 64.1 bits (157), Expect = 1e-13
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+ K QC C R F+ HL H R HTGEKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 44.5 bits (106), Expect = 1e-06
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
+ + C C R F+ L +H RIHTG+KP
Sbjct: 10 TKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + + K C CGR F +H ++H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 64.1 bits (157), Expect = 1e-13
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIR-THTGEKPFSC 434
TG+KP++C C ++F ++ L H R HTGEKP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIR-IHTGQKPFQC 406
++PY C C + F ++ L RH R HTG+KP
Sbjct: 10 KKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 41.8 bits (99), Expect = 1e-05
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRH 450
+ + TG+KP+ C CG+ F ++ RH
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 63.7 bits (156), Expect = 2e-13
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
G+K ++CR C FS++ L H H GEKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 47.9 bits (115), Expect = 6e-08
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+ + C CD FS++ L H +H G+KP
Sbjct: 10 EKTWKC--RECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + GEK + C C F+++ + H VH
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 63.8 bits (156), Expect = 2e-13
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
T K + C C ++F+R HLT H + HT + S
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 45.3 bits (108), Expect = 6e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 422 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ T K ++C+ CG+ F R RH K+H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
+ Y C C + F+R LTRH +IHT +
Sbjct: 10 SKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 63.2 bits (153), Expect = 2e-12
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 1/109 (0%)
Query: 386 SRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSD 445
S + I TG F+C+ C ++ LT H+ TG +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRW 60
Query: 446 EKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHH 494
K R + + + K+ M + + Q VH + H+
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
Score = 57.9 bits (139), Expect = 1e-10
Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 7/85 (8%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRI-----HTGQKPFQCRICMRSFSRSDHLTTHIRT 425
+ C ++C + ELT H+ + S R L
Sbjct: 17 ASKFRC--KDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74
Query: 426 HTGEKPFSCDVCGRKFARSDEKKRH 450
+K C CG F + H
Sbjct: 75 EDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 35.5 bits (81), Expect = 0.009
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 2/54 (3%)
Query: 381 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHI--RTHTGEKPF 432
R L QK +C C SF L+ H+ H +
Sbjct: 58 KRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 59.1 bits (144), Expect = 6e-12
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 396 RIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 433
+GQ+ ++C+ C +SF + LT H R HTG P S
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 44.5 bits (106), Expect = 9e-07
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPF 404
+R Y C + C + F + LT H RIHTG P
Sbjct: 8 QRVYEC--QECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 37.2 bits (87), Expect = 4e-04
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 424 RTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+G++ + C CG+ F + H ++H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 58.8 bits (143), Expect = 9e-12
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCD 435
+G+K C C ++F L H R H GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 422 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ +GEK +CD CG+ F + H +VH
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 39.9 bits (94), Expect = 4e-05
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+ + C + C + F L H R+H G+K
Sbjct: 10 EKSHTC--DECGKNFCYISALRIHQRVHMGEKCSGP 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 61.1 bits (147), Expect = 1e-11
Identities = 26/98 (26%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 365 SKTPVHERPYACPVENCDRRFSRSDE--LTRHIRIHTGQKPFQCRICMRSFSRSDHLTTH 422
TP +R V+ DE + F C +C+ FS S L H
Sbjct: 34 QLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQH 93
Query: 423 IRTHTGEKPFSCDVCGRKFARSDEKKRHA-KVHLKQRS 459
IR E C VC ++F +D H K H S
Sbjct: 94 IRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNICVS 129
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 57.7 bits (140), Expect = 2e-11
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 402 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
+ F C +C R+F+R +HL H R+HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 48.1 bits (115), Expect = 3e-08
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 372 RPYACPVENCDRRFSRSDELTRHIRIHTGQK 402
R + C V C R F+R + L RH R HT +K
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
Score = 41.5 bits (98), Expect = 8e-06
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 430 KPFSCDVCGRKFARSDEKKRHAKVHLKQR 458
+ F C+VC R FAR + KRH + H ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 56.5 bits (137), Expect = 5e-11
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 394 HIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFS 433
G+ P+ C C +SF++ L H R+ + P S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 42.3 bits (100), Expect = 7e-06
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPF 404
E PY C C + F++ L H R + P
Sbjct: 9 ETPYLCG--QCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 36.5 bits (85), Expect = 6e-04
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 422 HIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ GE P+ C CG+ F + H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 56.5 bits (136), Expect = 7e-11
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 396 RIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVC 437
+K C IC + F HL H +H+GEKP+S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 46.9 bits (111), Expect = 2e-07
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRIC 409
+ AC E C + F L RH H+G+KP+
Sbjct: 10 RKQVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 36.5 bits (84), Expect = 8e-04
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 424 RTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ K +C++CG+ F RH H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 55.8 bits (135), Expect = 9e-11
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 396 RIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSC 434
+G+KP+ C C +FS ++ L H + HT + S
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 42.7 bits (101), Expect = 5e-06
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 424 RTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+GEKP+SC C F+ ++ +H K+H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 40.4 bits (95), Expect = 2e-05
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQC 406
E+PY+C C FS ++ L +H ++HT +
Sbjct: 8 EKPYSCA--ECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 56.6 bits (136), Expect = 1e-10
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 7/77 (9%)
Query: 387 RSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDE 446
S + +IH G + +C C F T + K C+ C + +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAA 54
Query: 447 KKRHAKVHLKQRSKKES 463
+ +++ S
Sbjct: 55 LNKDEGNESGKKTSGPS 71
Score = 48.5 bits (115), Expect = 7e-08
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
+R C C F R L+R K C C + + L +G+K
Sbjct: 16 DRSQKC--SKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNESGKK 66
Query: 431 PF 432
Sbjct: 67 TS 68
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 52.2 bits (124), Expect = 1e-08
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 361 PNRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLT 420
+ + ++ Y C + C+ + S E H R+ + C C F +
Sbjct: 4 GSSGASPVENKEVYQCRL--CNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQ 59
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRH-AKVH 454
H + K +C C R F S RH +VH
Sbjct: 60 EH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 49.9 bits (119), Expect = 1e-08
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 393 RHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 431
G+ PF+C C R F++ ++L H RTH +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 39.5 bits (92), Expect = 6e-05
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 421 THIRTHTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+ + GE PF C C R F + + +H + H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 39.1 bits (91), Expect = 8e-05
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQKP 403
E P+ C CDR F++ + L +H R H +
Sbjct: 10 ENPFKC--SKCDRVFTQRNYLVQHERTHARKSG 40
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 45.0 bits (107), Expect = 5e-07
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHTGQK 402
++ + C ++ C + + ++ L H+R HTG++
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 44.7 bits (106), Expect = 7e-07
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 399 TGQKPFQCRI--CMRSFSRSDHLTTHIRTHTGEK 430
+K C I C + + ++ HL H+R HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 26.2 bits (58), Expect = 3.1
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 427 TGEKPFSCDV--CGRKFARSDEKKRHAKVHLKQR 458
+K C + CG+ + ++ + H + H +R
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 43.7 bits (103), Expect = 1e-06
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 404 FQCRICMRSFSRSDHLTTHIRTHTGEK 430
F C C + F RSDHLT HI H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 40.6 bits (95), Expect = 2e-05
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 374 YACPVENCDRRFSRSDELTRHIRIHTGQK 402
+ACP C +RF RSD LT HI +H +K
Sbjct: 3 FACPE--CPKRFMRSDHLTLHILLHENKK 29
Score = 36.8 bits (85), Expect = 4e-04
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 432 FSCDVCGRKFARSDEKKRHAKVHLKQR 458
F+C C ++F RSD H +H ++
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 43.8 bits (103), Expect = 1e-06
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHT 399
+RPY+C CD+ F R+ +L RH + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 37.7 bits (87), Expect = 2e-04
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 429 EKPFSCDV--CGRKFARSDEKKRHAKVHLKQ 457
++P+SCD C + F R+ + RH K H ++
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 28.0 bits (62), Expect = 0.61
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 402 KPFQCRI--CMRSFSRSDHLTTHIRTHT 427
+P+ C C ++F R+ L H ++H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 43.4 bits (102), Expect = 2e-06
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 404 FQCRICMRSFSRSDHLTTHIRTHTGEKP 431
F C C + F RSDHL+ HI H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 40.7 bits (95), Expect = 2e-05
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 374 YACPVENCDRRFSRSDELTRHIRIHTGQKP 403
+ACP C +RF RSD L++HI +H
Sbjct: 3 FACPE--CPKRFMRSDHLSKHITLHELLGE 30
Score = 39.5 bits (92), Expect = 5e-05
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 432 FSCDVCGRKFARSDEKKRHAKVHLKQRSKKE 462
F+C C ++F RSD +H +H ++
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEERR 33
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 39.1 bits (91), Expect = 6e-05
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 430 KPFSCDVCGRKFARSDEKKRHA-KVH 454
K ++C +C R F R D RHA K+H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
Score = 36.0 bits (83), Expect = 7e-04
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 402 KPFQCRICMRSFSRSDHLTTHIRT-HTG 428
K + C +C R+F+R D L H + H+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 35.2 bits (81), Expect = 0.002
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 372 RPYACPVENCDRRFSRSDELTRHIR-IHTG 400
+ YAC + C+R F+R D L RH + IH+G
Sbjct: 1 KAYACGL--CNRAFTRRDLLIRHAQKIHSG 28
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 1e-04
Identities = 34/233 (14%), Positives = 61/233 (26%), Gaps = 56/233 (24%)
Query: 230 INIECGALKQPSSSYSSCSGEQDVYARVNQSLMHSPNNKYQWLDSPVEYSA---SIVQAQ 286
I E +QPS ++D NQ KY + Y ++++ +
Sbjct: 98 IKTEQ---RQPSMMTRMYIEQRDRLYNDNQVF-----AKYN-VSRLQPYLKLRQALLELR 148
Query: 287 P--GIIPKQEPVYGNTNLSGCG--SLVN--LSD----PNNPGSSYPVQLAEYNPSTSKGH 336
P ++ + G + G G + + + L N S
Sbjct: 149 PAKNVL-----IDG---VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVL 199
Query: 337 EILSQVYQQSPLPLKLVPVKPRKYPNRPSKTPVHERPYACPVENCDRRFSRS----DEL- 391
E+L ++ Q R R + + +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-----KSKPYENCLLVLLNVQ 254
Query: 392 -TRHIRIHTGQKPF--QCRICM--RSFSRSDHL----TTHIRTHTGEKPFSCD 435
+ F C+I + R +D L TTHI + D
Sbjct: 255 NAKAW------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Score = 43.3 bits (101), Expect = 2e-04
Identities = 69/505 (13%), Positives = 138/505 (27%), Gaps = 154/505 (30%)
Query: 98 FERPSTKD-DSGELCQPKTELITDSPLG-LHEEEEETSLSSTISMYPGSNPSHSDKISYR 155
FE + D C+ + D P L +EE + + S + + R
Sbjct: 25 FEDAFVDNFD----CKD----VQDMPKSILSKEEIDHIIMS----------KDAVSGTLR 66
Query: 156 GIFTTTNSSPSHQP----GAASSPGNNWMLTG-----TDKSLFPPLFISSGVLGQSNNSN 206
+F T S ++++ S+ ++I + N N
Sbjct: 67 -LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDN 123
Query: 207 Q--GPYSGSSPSHYDE--------RSQQ----HEML-------------NINIECGALKQ 239
Q Y+ S Y + R + +L + ++C K
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC---KM 180
Query: 240 PSSSY----SSCSGEQDVYARVNQSLMHSPNNKYQWLDSPVEYSASIVQAQPGI--IPKQ 293
+ +C+ + V + + L N D I Q + + K
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 294 EPVYGNT----------------NLSGCGSLV-----NLSDPNNPGSSYPVQLAEYNP-- 330
+P Y N NL C L+ ++D + ++ + L ++
Sbjct: 241 KP-YENCLLVLLNVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 331 STSKGHEILS------------QVYQQSPLPLKLVPVKPRKYPNRPSKTPVHERPYACPV 378
+ + +L +V +P L ++ R
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-------------- 344
Query: 379 ENCDR-RFSRSDELTRHIRIH-TGQKPFQCRICMRSFS--RSDHLTTHIRTHT-----GE 429
D + D+LT I +P + R S HI T +
Sbjct: 345 ---DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPTILLSLIWFD 398
Query: 430 KPFSCDVCGRKFARSDEKK----RHAK--------VHLKQRSKKESKMAV---MMSQQQA 474
S K + K ++L+ + K E++ A+ ++
Sbjct: 399 VIKSDV---MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 475 QQQQQQNHVHQQQQHHHHHHH--HH 497
+ + + + + H HH
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHH 480
Score = 42.1 bits (98), Expect = 5e-04
Identities = 56/470 (11%), Positives = 121/470 (25%), Gaps = 166/470 (35%)
Query: 1 MVGEG---LRAEVL-----ESNFLSQIPAWLPGADQISNSGGDGKTTSFV----NLSH-- 46
++G G + +V + +I WL N + + L +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKI-FWL-------NLKNCNSPETVLEMLQKLLYQI 209
Query: 47 -PPTRSIPEYLILVEMP-------KLRVLKRPKGCSC-IV--DISPYLESLTGTRGSLSG 95
P S ++ +++ R+LK +C +V ++ ++
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAW--------- 259
Query: 96 NSFERPS-----TKD----DSGELCQPKTELITDSPLGLHEEEEETSLSSTISMYPGSNP 146
N+F T+ D + + L +E ++ L + P P
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 147 SHSDKISYR--GIFTTTNSSPSHQPGAASSPG----NNWMLTGTDK-------------- 186
+ R I + G +NW DK
Sbjct: 320 REVLTTNPRRLSII-----------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 187 ----------SLFPP-LFISSGVLG----------------QSNNS---NQGPYSGSS-- 214
S+FPP I + +L + + + P +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 215 PSHY-------DERSQQHEMLNINIECGALKQPSSSYSSCSGEQDVY---------ARVN 258
PS Y + H + ++ + + S D Y +
Sbjct: 429 PSIYLELKVKLENEYALHRSI---VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 259 QSLMHSPNNK----YQWLDSPVEYSASIVQAQPGI-------------IPKQEPVYGN-- 299
+ +++L+ + + ++ A I I +P Y
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 300 ----TNLSGCGSLVNLSDPNNPGSSYPVQLAEYNPSTSKGHEILSQVYQQ 345
L + S + +++A + I + ++Q
Sbjct: 546 NAILDFLPKIEENLICSKYTD-----LLRIALMAEDEA----IFEEAHKQ 586
Score = 32.5 bits (73), Expect = 0.37
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 7/24 (29%)
Query: 489 HHHHHH-------HHHPNMEGMPV 505
HHHHHH H + + + V
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSV 24
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 38.7 bits (90), Expect = 1e-04
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 368 PVHERPYACPVENCDRRFSRSDELTRHIRIHTGQK 402
+ ++ + C C + F R + HI+ H +
Sbjct: 13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 34.1 bits (78), Expect = 0.006
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 402 KPFQCRI--CMRSFSRSDHLTTHIRTHTGEK 430
K F+C C ++F R ++ +HI+TH ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 29.8 bits (67), Expect = 0.19
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 422 HIRTHTGEKP---FSCDV--CGRKFARSDEKKRHAKVHLKQR 458
I + E P F C C + F R + H + HL+ R
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 2e-04
Identities = 78/505 (15%), Positives = 132/505 (26%), Gaps = 191/505 (37%)
Query: 7 RAEVLESNFLSQIPAWLPGADQISNSGGDGKTTSFVNLSHPPTRSIPEYLILVEMPKLRV 66
A L+ F +P P D + T+ L + ++L V
Sbjct: 29 IASQLQEQFNKILPE--P----TEGFAADDEPTTPAEL-------VGKFLGYVSS----- 70
Query: 67 LKRPKGCSCIVDISPYLESLTGTRGSLSGNSFERP--STKDDSGELCQPKTELITDSPLG 124
L P + + + L +L FE D
Sbjct: 71 LVEPS------KVGQFDQVL-----NLCLTEFENCYLEGND------------------- 100
Query: 125 LH------EEEEETSLSST---ISMYPGSNPSHSDKISYRGIFTTTNSSPSHQPGA---A 172
+H +E +T+L T I Y A A
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNY------------ITARIMAKRPFDKKSNSALFRA 148
Query: 173 SSPGNNWMLTGTDKSLFPPLFISSGVLGQSNNSN-----QGPYSGSSPSHYD--ERSQQH 225
GN L +F G GQ N + + Y D + S +
Sbjct: 149 VGEGNA--------QLV-AIF---G--GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 226 EMLNINIECGALKQPSSSYSSCSGEQDVYARVNQSLMHSPNNKYQWLDSP-----VEYSA 280
L + + V+ + L +WL++P +Y
Sbjct: 195 -----------LSELIRTTLDAE---KVFTQGLNIL--------EWLENPSNTPDKDYLL 232
Query: 281 SIVQAQPGIIPKQEPVYGNT-NLSGC--GSLVNLSDPNNPGSSYPVQ-------LA---- 326
SI + P I Q Y T L G G L + G++ Q +A
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL----KGATGHSQGLVTAVAIAETDS 288
Query: 327 --EYNPSTSKGHEIL-------SQVYQQSPLPLKLVPVKPRKYPNRPSKTPVHERPYACP 377
+ S K +L + Y + LP ++ S P P
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL---------EDSLENNEGVP--SP 337
Query: 378 ---VENCDRRFSRSDELTRHIRIHTGQKPFQCRICM------RSF-----SRS-DHLTTH 422
+ N + +++ ++ P ++ + ++ +S L
Sbjct: 338 MLSISNLTQ-----EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 423 IRTH---TG----EKPFSCDVCGRK 440
+R +G PFS RK
Sbjct: 393 LRKAKAPSGLDQSRIPFS----ERK 413
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 38.4 bits (88), Expect = 2e-04
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 398 HTGQKPFQCRICMRSFSRSDHLTTHIRTHTG 428
+G+KP+ C +C F R D ++ H+R+H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 36.8 bits (84), Expect = 7e-04
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 370 HERPYACPVENCDRRFSRSDELTRHIRIHTG 400
E+PY+CPV C RF R D ++ H+R H G
Sbjct: 7 GEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35
Score = 35.7 bits (81), Expect = 0.001
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 426 HTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+GEKP+SC VCG +F R D H + H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 42.9 bits (100), Expect = 2e-04
Identities = 14/123 (11%), Positives = 33/123 (26%), Gaps = 10/123 (8%)
Query: 314 PNNPGSSYPVQLAEYNPSTSKGHEILSQVYQQSPLPLKLVPVKPRKYPNRPSKTPVH--- 370
P+ G++ + E++ + + E + + + V N +
Sbjct: 81 PDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVD 140
Query: 371 -------ERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHI 423
+ E S+ + +QC +C L H+
Sbjct: 141 NEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV 200
Query: 424 RTH 426
+H
Sbjct: 201 ASH 203
Score = 34.4 bits (78), Expect = 0.11
Identities = 13/143 (9%), Positives = 30/143 (20%), Gaps = 1/143 (0%)
Query: 312 SDPNNPGSSYPVQLAEYNPSTSKGHEILSQVYQQSPLPLKLVPVKPRKYPNRPSKTPVHE 371
+ P++ + KG+ V + S + ++ +
Sbjct: 62 VQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVT 121
Query: 372 RPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKP 431
+ N + + S+ T +
Sbjct: 122 YSDT-GINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHG 180
Query: 432 FSCDVCGRKFARSDEKKRHAKVH 454
+ C VC + H H
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVASH 203
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 37.1 bits (85), Expect = 4e-04
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 402 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
KP QC +C ++F+++ L H+R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.3 bits (57), Expect = 2.5
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 372 RPYACPVENCDRRFSRSDELTRHIRIHTGQK 402
+P C + C + F+++ L H+R HTG+K
Sbjct: 1 KPCQCVM--CGKAFTQASSLIAHVRQHTGEK 29
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 38.0 bits (88), Expect = 4e-04
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 388 SDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEK 447
S + H + C+ C S L H + G + C CGR D
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSILK-LKEHE-DYCGARTELCGNCGRNVLVKD-L 58
Query: 448 KRHAKVHLKQRSKKES 463
K H +V ++ S S
Sbjct: 59 KTHPEVCGREGSGPSS 74
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 35.9 bits (82), Expect = 8e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 402 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
KP+ C C R F+ L H+R HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 35.1 bits (80), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 372 RPYACPVENCDRRFSRSDELTRHIRIHTGQK 402
+PY C +C R+F+ L RH+RIHTG+K
Sbjct: 2 KPYVC--IHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.4 bits (60), Expect = 1.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 430 KPFSCDVCGRKFARSDEKKRHAKVHLKQR 458
KP+ C C R+FA +RH ++H ++
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 38.5 bits (89), Expect = 0.001
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 349 PLKLVPVKPRK-YPNRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCR 407
P+ + + +P+ +K + CP E C + + H C
Sbjct: 57 PVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRH--LEDHQAHCEFALMDCP 114
Query: 408 ICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKK 448
C R F + H+ HI + SCD C A D++
Sbjct: 115 QCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMAFEDKEI 154
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 35.5 bits (81), Expect = 0.002
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 404 FQCRICMRSFSRSDHLTTHIRT 425
F C C + F RSD L+ HI+T
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
Score = 32.4 bits (73), Expect = 0.016
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Query: 374 YACPVENCDRRFSRSDELTRHIR 396
+ACP C +RF RSD L++HI+
Sbjct: 3 FACPA--CPKRFMRSDALSKHIK 23
Score = 29.7 bits (66), Expect = 0.15
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 432 FSCDVCGRKFARSDEKKRHAK 452
F+C C ++F RSD +H K
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 34.6 bits (79), Expect = 0.002
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 374 YACPVENCDRRFSRSDELTRHIRIHTG 400
Y C ENC R F+ +L RH +IHTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 34.3 bits (78), Expect = 0.003
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 398 HTGQKPFQCRICMRSFSRSDHLTTHIRTHT 427
+G++PF CRIC+ +F+ + H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 32.8 bits (74), Expect = 0.011
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 426 HTGEKPFSCDVCGRKFARSDEKKRHAKVH 454
+G++PF C +C F RH KVH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 28.2 bits (62), Expect = 0.50
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHT 399
+RP+ C + C F+ RH+++HT
Sbjct: 5 KRPFVCRI--CLSAFTTKANCARHLKVHT 31
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.9 bits (82), Expect = 0.004
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 388 SDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRT-HTG---EKPFSCDVCGRKFAR 443
+ + + ++C+ C + T H+ + H + C C R
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 444 SDEKKRH-AKVH 454
D H K H
Sbjct: 63 YDALSEHNLKYH 74
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic
groups, and carriers, transferase; HET: PT1; 1.90A
{Coxiella burnetii}
Length = 314
Score = 38.0 bits (89), Expect = 0.005
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 461 KESKMAVMMSQQ-QAQQQQQQNHVHQQQQHHHHHHHHH 497
K ++ A+ ++ ++ ++ +++ Q HHHHHHHHH
Sbjct: 277 KATREAIKIATYTRSVDTIEEENLYFQGHHHHHHHHHH 314
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 33.7 bits (76), Expect = 0.007
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 402 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
K F C C + F L H+R HT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.7 bits (63), Expect = 0.41
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 367 TPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQK 402
+ + + C E C++ F L H+RIHT +K
Sbjct: 3 SGSSGKIFTC--EYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 25.2 bits (54), Expect = 7.2
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 430 KPFSCDVCGRKFARSDEKKRHAKVHLKQR 458
K F+C+ C + F + H ++H ++
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.6 bits (76), Expect = 0.008
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 398 HTGQKPFQCRICMRSFSRSDHLTTHIRTHT 427
+K F+C C ++FS S +LT H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 30.6 bits (68), Expect = 0.099
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 425 THTGEKPFSCDVCGRKFARSDEKKRHAKVHLK 456
+ EK F C+ C + F+ S +H ++H +
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 27.5 bits (60), Expect = 1.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 369 VHERPYACPVENCDRRFSRSDELTRHIRIHT 399
E+ + C C++ FS S LT+H RIHT
Sbjct: 8 QKEKCFKC--NKCEKTFSCSKYLTQHERIHT 36
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 32.9 bits (74), Expect = 0.011
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 372 RPYACPVENCDRRFSRSDELTRHIRIHTG 400
RPY+C V C +RFS ++ H R+HTG
Sbjct: 2 RPYSCSV--CGKRFSLKHQMETHYRVHTG 28
Score = 30.2 bits (67), Expect = 0.10
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 402 KPFQCRICMRSFSRSDHLTTHIRTHTG 428
+P+ C +C + FS + TH R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.8 bits (66), Expect = 0.12
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 430 KPFSCDVCGRKFARSDEKKRHAKVH 454
+P+SC VCG++F+ + + H +VH
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 32.3 bits (73), Expect = 0.016
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 371 ERPYACPVENCDRRFSRSDELTRHIRIHT 399
++P+ C C +RF+ D L H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.5 bits (73), Expect = 0.018
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 399 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
+ KP++C C + + +L H+R HTGEK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.3 bits (57), Expect = 2.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 372 RPYACPVENCDRRFSRSDELTRHIRIHTGQK 402
+PY CP C + L H+R HTG+K
Sbjct: 8 KPYKCP--QCSYASAIKANLNVHLRKHTGEK 36
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.030
Identities = 5/22 (22%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 127 EEEEETSLSSTISMY-PGSNPS 147
E++ L +++ +Y S P+
Sbjct: 18 EKQALKKLQASLKLYADDSAPA 39
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 31.9 bits (72), Expect = 0.042
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 9/60 (15%)
Query: 376 CPVENCDRRFSRSDELTRHI-RIHTGQK------PFQCR--ICMRSFSRSDHLTTHIRTH 426
C + C S +L RH+ + H Q P C C + + HI
Sbjct: 4 CKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ 63
>3rce_A Oligosaccharide transferase to N-glycosylate PROT;
oligosaccharyltransferase, membrane protein, helical
bundle, glycosylation, acceptor peptide, plasma
membrane; HET: PPN; 3.40A {Campylobacter lari}
Length = 724
Score = 35.0 bits (79), Expect = 0.057
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 483 VHQQQQHHHHHHHHH 497
+ ++ HHHHHHHHH
Sbjct: 710 LKREFHHHHHHHHHH 724
>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans
serovar lai} PDB: 3ubl_A*
Length = 242
Score = 34.3 bits (79), Expect = 0.070
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 486 QQQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 226 FQSHHHHHHWSHPQFE 241
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal
transduction, photocycle ST membrane protein; HET: BOG
RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Length = 163
Score = 33.5 bits (76), Expect = 0.085
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 471 QQQAQQQQQQNHVHQQQQHHHHHHHHH 497
+ +Q Q + + HHHHHHH
Sbjct: 137 NAREDAEQAQKRAEEINTNSHHHHHHH 163
Score = 31.1 bits (70), Expect = 0.45
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 461 KESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHH 495
+ S +++ A+Q Q++ HHHHHHH
Sbjct: 129 RTSLEDAKNAREDAEQAQKRAEEINTNSHHHHHHH 163
Score = 28.8 bits (64), Expect = 2.3
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 471 QQQAQQQQQQNHVHQQQQHHHHHHHHH 497
+ + +Q ++ + HHHHHH
Sbjct: 136 KNAREDAEQAQKRAEEINTNSHHHHHH 162
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 33.3 bits (75), Expect = 0.12
Identities = 10/71 (14%), Positives = 22/71 (30%)
Query: 390 ELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKR 449
R IR + + M+ T H GEK + + ++ +
Sbjct: 167 RACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRG 226
Query: 450 HAKVHLKQRSK 460
+ + ++ K
Sbjct: 227 PIHLSVLRQGK 237
Score = 33.3 bits (75), Expect = 0.13
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 379 ENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
E+ +R + T H + G+K Q + + L I +
Sbjct: 184 EDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.14
Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 439 RKFARSDEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQ 488
RK+ R +++KR L++ M +++A++ ++ + Q +Q
Sbjct: 88 RKW-REEQRKR-----LQELDAASKVMEQEW-REKAKKDLEEWNQRQSEQ 130
>4f62_A Geranyltranstransferase; enzyme function initiative, structural
genomics; 2.10A {Marinomonas SP}
Length = 317
Score = 33.0 bits (76), Expect = 0.20
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 302 QSHHHHHHWSHPQFE 316
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate
synthase; 1.94A {Methylococcus capsulatus}
Length = 324
Score = 33.0 bits (76), Expect = 0.21
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 309 QSHHHHHHWSHPQFE 323
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 33.1 bits (76), Expect = 0.22
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 264 SPNNKYQ-WLDSPVEYSASIVQAQPGIIPKQ 293
+ NK++ WL+ VE A A+ G IPK+
Sbjct: 24 TEENKFKAWLE--VEILACEAWAELGDIPKE 52
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 32.9 bits (76), Expect = 0.26
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 471 QSHHHHHHWSHPQFE 485
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 32.6 bits (75), Expect = 0.26
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 264 SPNNKYQ-WLDSPVEYSASIVQAQPGIIPK 292
+ KY+ WL+ VE + + + G+IPK
Sbjct: 14 TEEAKYRRWLE--VELAVTRAYEELGMIPK 41
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown
function, nysgxrc target T2186, superfamily, protein
structure initiative, PSI; 2.90A {Listeria innocua}
SCOP: c.1.11.2 d.54.1.1
Length = 393
Score = 32.7 bits (75), Expect = 0.26
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 489 HHHHHHHHHPNMEG 502
HHHHHHHHH +
Sbjct: 2 HHHHHHHHHHGLVP 15
Score = 30.0 bits (68), Expect = 1.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 488 QHHHHHHHHHP 498
HHHHHHHHH
Sbjct: 2 HHHHHHHHHHG 12
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 32.8 bits (75), Expect = 0.28
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 478 QQQNHVHQQQQHHHHHHHHHPNMEGMPVVTTP 509
+ N Q HHH H P+
Sbjct: 375 SEMNLPTQTVLHHHAHAAACLAEHQWPLDGGD 406
Score = 29.7 bits (67), Expect = 2.9
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 4/34 (11%)
Query: 477 QQQQNHVHQQQQHHHHHHH----HHPNMEGMPVV 506
+ HH H H ++G V+
Sbjct: 375 SEMNLPTQTVLHHHAHAAACLAEHQWPLDGGDVI 408
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 32.7 bits (75), Expect = 0.28
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 264 SPNNKYQ-WLDSPVEYSASIVQAQPGIIPKQ 293
S ++ E + + QAQ G+IP+
Sbjct: 22 SDRALVSYMVE--AEVALAQAQAQVGVIPQS 50
>1pq4_A Periplasmic binding protein component of AN ABC T uptake
transporter; ZNUA, loop, metal-binding, metal binding
protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB:
2ov3_A 2ov1_A
Length = 291
Score = 32.4 bits (74), Expect = 0.30
Identities = 2/16 (12%), Positives = 3/16 (18%)
Query: 482 HVHQQQQHHHHHHHHH 497
H H +
Sbjct: 112 HDHGSESEKEKAKGAL 127
Score = 29.7 bits (67), Expect = 1.9
Identities = 1/16 (6%), Positives = 1/16 (6%)
Query: 482 HVHQQQQHHHHHHHHH 497
H
Sbjct: 110 DGHDHGSESEKEKAKG 125
Score = 29.7 bits (67), Expect = 2.4
Identities = 1/19 (5%), Positives = 5/19 (26%)
Query: 482 HVHQQQQHHHHHHHHHPNM 500
H + ++ +
Sbjct: 114 HGSESEKEKAKGALMVADP 132
Score = 28.9 bits (65), Expect = 3.4
Identities = 0/16 (0%), Positives = 2/16 (12%)
Query: 482 HVHQQQQHHHHHHHHH 497
+ +
Sbjct: 113 DHGSESEKEKAKGALM 128
Score = 28.5 bits (64), Expect = 4.5
Identities = 0/16 (0%), Positives = 1/16 (6%)
Query: 482 HVHQQQQHHHHHHHHH 497
+
Sbjct: 111 GHDHGSESEKEKAKGA 126
Score = 28.5 bits (64), Expect = 5.4
Identities = 3/16 (18%), Positives = 3/16 (18%)
Query: 482 HVHQQQQHHHHHHHHH 497
H H H
Sbjct: 107 HSHDGHDHGSESEKEK 122
Score = 27.8 bits (62), Expect = 8.3
Identities = 1/16 (6%), Positives = 1/16 (6%)
Query: 482 HVHQQQQHHHHHHHHH 497
H
Sbjct: 109 HDGHDHGSESEKEKAK 124
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich,
hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB:
1u7q_A 2a00_A* 2a29_A*
Length = 156
Score = 31.3 bits (71), Expect = 0.33
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 488 QHHHHHHHHH 497
HHHHHHHHH
Sbjct: 3 HHHHHHHHHH 12
Score = 28.6 bits (64), Expect = 2.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 487 QQHHHHHHHH 496
HHHHHHHH
Sbjct: 3 HHHHHHHHHH 12
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET:
MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Length = 145
Score = 31.2 bits (70), Expect = 0.33
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 469 MSQQQAQQQQQQNHVHQQQQHHHHHH 494
Q + + + + + HHHHHH
Sbjct: 120 AIQSERKDRHGSGGIAEGGSHHHHHH 145
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 32.3 bits (74), Expect = 0.35
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 264 SPNNKYQ-WLDSPVEYSASIVQAQPGIIPKQ 293
S + ++ E + + QA+ GIIP+
Sbjct: 22 SAQSFISRCVE--TEVALARAQARLGIIPED 50
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 32.3 bits (74), Expect = 0.35
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 264 SPNNKYQ-WLDSPVEYSASIVQAQPGIIPKQ 293
S + Q LD E + + +A G++P
Sbjct: 20 SDRGRLQGMLD--FEAALARAEASAGLVPHS 48
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding,
nucleotide-binding, membrane, transmembrane, transport
protein; 3.00A {Methanosarcina acetivorans} SCOP:
f.58.1.1
Length = 295
Score = 32.0 bits (73), Expect = 0.37
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 489 HHHHHHHHHPN 499
HHHHHHHHH +
Sbjct: 3 HHHHHHHHHHS 13
Score = 31.6 bits (72), Expect = 0.58
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 488 QHHHHHHHHH 497
HHHHHHHHH
Sbjct: 3 HHHHHHHHHH 12
Score = 28.9 bits (65), Expect = 3.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 487 QQHHHHHHHHHP 498
HHHHHHHH
Sbjct: 3 HHHHHHHHHHSS 14
Score = 28.9 bits (65), Expect = 3.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 490 HHHHHHHHPNMEG 502
HHHHHHHH + G
Sbjct: 3 HHHHHHHHHHSSG 15
>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
gibberellin signaling pathway, hydrolase, nucleus,
hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp}
PDB: 3ed1_A*
Length = 365
Score = 32.0 bits (73), Expect = 0.48
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 482 HVHQQQQHHHHHHHHH 497
+++ HHHHHHHHH
Sbjct: 350 NLYYGSHHHHHHHHHH 365
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 31.9 bits (73), Expect = 0.48
Identities = 4/31 (12%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 264 SPNNKYQ-WLDSPVEYSASIVQAQPGIIPKQ 293
+ +L+ VE + + G+ +
Sbjct: 20 TNEAIINAYLE--VERALVCALEELGVAERG 48
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 32.1 bits (74), Expect = 0.48
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 485 QQQQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 488 YFQSHHHHHHWSHPQFE 504
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 31.5 bits (72), Expect = 0.50
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 488 QHHHHHHHHH--PNMEGMP 504
HHHHHHHHH ++EG
Sbjct: 3 HHHHHHHHHHSSGHIEGRH 21
>1hcw_A BBA1; growth response protein, de novo protein design,
supersecondary motif; HET: PYA; NMR {} SCOP: k.14.1.1
PDB: 1t8j_A*
Length = 26
Score = 27.9 bits (61), Expect = 0.56
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 385 FSRSDELTRHIRIHTG 400
FSRSDEL + +R+H G
Sbjct: 9 FSRSDELAKLLRLHAG 24
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.7 bits (61), Expect = 0.57
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 372 RPYACPVENCDRRFSRSDELTRHIRIH 398
+PY C E C +RF +S +L HIR H
Sbjct: 1 KPYVC--ERCGKRFVQSSQLANHIRHH 25
Score = 27.4 bits (60), Expect = 0.78
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 430 KPFSCDVCGRKFARSDEKKRHAKVH 454
KP+ C+ CG++F +S + H + H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 26.6 bits (58), Expect = 1.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 402 KPFQCRICMRSFSRSDHLTTHIRTH 426
KP+ C C + F +S L HIR H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.2 bits (63), Expect = 0.65
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 430 KPFSCDVCGRKFARSDEKKRHAKVHLKQRSK 460
+ ++C C R+F + H VH + R++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRAR 35
Score = 27.0 bits (60), Expect = 1.6
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 402 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
+ + C C R F + L H+ H ++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 31.7 bits (72), Expect = 0.66
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 475 QQQQQQNHVHQQQQHHHHHH 494
Q Q+ H+Q +HHHHHH
Sbjct: 437 QIADSQHRSHRQLEHHHHHH 456
Score = 29.8 bits (67), Expect = 2.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 474 AQQQQQQNHVHQQQQHHHHHHHHH 497
A +Q + H+ + HHHHHH
Sbjct: 433 ATCEQIADSQHRSHRQLEHHHHHH 456
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-binding protein; 2.26A
{Neisseria gonorrhoeae}
Length = 291
Score = 31.2 bits (71), Expect = 0.71
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 488 QHHHHHHHHHP 498
HHHHHHHHH
Sbjct: 3 HHHHHHHHHHS 13
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 31.5 bits (72), Expect = 0.73
Identities = 4/30 (13%), Positives = 9/30 (30%), Gaps = 3/30 (10%)
Query: 264 SPNNKYQ-WLDSPVEYSASIVQAQPGIIPK 292
S + E + + +A+ I
Sbjct: 25 SAKADIDAMIR--FETALAQAEAEASIFAD 52
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 31.0 bits (70), Expect = 0.73
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 466 AVMMSQQQAQQQQQQNHVHQQQQHHHHHHH 495
A S + ++V + HHHHHH
Sbjct: 190 AAWASAVKLDADGDPDNVPESALEHHHHHH 219
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU;
2.64A {Bacteroides thetaiotaomicron}
Length = 325
Score = 31.2 bits (71), Expect = 0.77
Identities = 11/45 (24%), Positives = 14/45 (31%)
Query: 451 AKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHH 495
A V Q + + + QQ HHHHHH
Sbjct: 281 AHVMQLQTTHISELDKKIETLNGRIGGYLSQVATQQVLEHHHHHH 325
Score = 30.4 bits (69), Expect = 1.3
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 469 MSQQQAQQQQQQNHV-------HQQQQHHHHHHHH 496
+S+ + + + QQ HHHHHH
Sbjct: 291 ISELDKKIETLNGRIGGYLSQVATQQVLEHHHHHH 325
>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: f.25.1.1
Length = 204
Score = 30.7 bits (70), Expect = 0.79
Identities = 6/26 (23%), Positives = 7/26 (26%), Gaps = 2/26 (7%)
Query: 480 QNHVHQQQQHHHHHHHHHPNME--GM 503
H H H HH + G
Sbjct: 4 DTLTHATAHAHEHGHHDAGGTKIFGF 29
Score = 27.6 bits (62), Expect = 8.9
Identities = 5/18 (27%), Positives = 5/18 (27%)
Query: 481 NHVHQQQQHHHHHHHHHP 498
H H H HH
Sbjct: 3 TDTLTHATAHAHEHGHHD 20
>3u61_A DNA polymerase accessory protein 62; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_A* 3u60_A*
Length = 199
Score = 30.6 bits (69), Expect = 0.82
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 487 QQHHHHHHHHH 497
+ HHHHHHHHH
Sbjct: 189 EHHHHHHHHHH 199
Score = 28.0 bits (62), Expect = 6.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 486 QQQHHHHHHHH 496
+ HHHHHHHH
Sbjct: 189 EHHHHHHHHHH 199
Score = 27.2 bits (60), Expect = 9.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 468 MMSQQQAQQQQQQNHVHQQQQHHHHHHHHH 497
+++ +Q+Q + + HHHHHHHH
Sbjct: 168 EVTKNVKEQKQLKKLALEWGLEHHHHHHHH 197
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET:
GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP:
c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Length = 315
Score = 31.2 bits (70), Expect = 0.83
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 487 QQHHHHHHHHHPNMEGMPVVTTPL 510
HHHHHHHH + PL
Sbjct: 3 HHHHHHHHHHSSGHIEGRHMANPL 26
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 31.0 bits (71), Expect = 0.83
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 488 QHHHHHHHHH 497
HHHHHHHHH
Sbjct: 3 HHHHHHHHHH 12
Score = 28.7 bits (65), Expect = 4.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 490 HHHHHHHHPNMEG 502
HHHHHHHH + G
Sbjct: 3 HHHHHHHHHHSSG 15
Score = 28.3 bits (64), Expect = 6.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 487 QQHHHHHHHH 496
HHHHHHHH
Sbjct: 3 HHHHHHHHHH 12
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein;
PSI-biology, structural genomics, NEW YORK structural
genomi research consortium; 2.40A {Sorangium cellulosum}
Length = 389
Score = 31.2 bits (71), Expect = 0.84
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 374 QSHHHHHHWSHPQFE 388
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 30.9 bits (69), Expect = 0.87
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 489 HHHHHHHHHPNMEGMPVVTTP 509
HHHHHHHHH + + P
Sbjct: 2 HHHHHHHHHHSSGHIEGRHMP 22
Score = 29.0 bits (64), Expect = 3.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 486 QQQHHHHHHHHHPNMEGMPVVTTP 509
HHHHHHH ++EG + P
Sbjct: 2 HHHHHHHHHHSSGHIEGRHMPAAP 25
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA;
structural genomics; 2.60A {Methylobacillus flagellatus}
Length = 348
Score = 31.0 bits (70), Expect = 0.94
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 333 QSHHHHHHWSHPQFE 347
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 30.7 bits (70), Expect = 0.99
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 227 QSHHHHHHWSHPQFE 241
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding
protein, lyase; HET: KCX ALY; 1.55A {Thermus
thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Length = 301
Score = 30.6 bits (68), Expect = 1.00
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 489 HHHHHHHHHPNMEGMPVVT 507
HHHHHHHHH + +
Sbjct: 3 HHHHHHHHHHSSGHIEGRH 21
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 30.9 bits (70), Expect = 1.0
Identities = 9/14 (64%), Positives = 11/14 (78%), Gaps = 2/14 (14%)
Query: 492 HHHHHHPNM--EGM 503
HHHHHH N+ +GM
Sbjct: 7 HHHHHHENLYFQGM 20
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib
complex; HET: NDP TOP; 1.90A {Coxiella burnetii} PDB:
3tq9_A* 3tqa_A* 3tqb_A*
Length = 178
Score = 30.2 bits (69), Expect = 1.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 481 NHVHQQQQHHHHHHHHH 497
+++ Q HHHHHHHHH
Sbjct: 162 ENLYFQGHHHHHHHHHH 178
Score = 27.5 bits (62), Expect = 6.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 480 QNHVHQQQQHHHHHHHH 496
+N Q HHHHHHHH
Sbjct: 162 ENLYFQGHHHHHHHHHH 178
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha
helices, oxidoreductase; HET: NDP MTX; 1.95A
{Streptococcus pneumoniae}
Length = 190
Score = 30.3 bits (69), Expect = 1.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 490 HHHHHHHHPNM 500
HHHHHHHH +
Sbjct: 3 HHHHHHHHGGL 13
Score = 27.9 bits (63), Expect = 5.2
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 488 QHHHHHHHH 496
+HHHHHHHH
Sbjct: 2 KHHHHHHHH 10
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
2.95A {Clostridium perfringens}
Length = 560
Score = 30.8 bits (69), Expect = 1.1
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 488 QHHHHHHHHH 497
HHHHHHHHH
Sbjct: 3 HHHHHHHHHH 12
Score = 28.2 bits (62), Expect = 7.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 487 QQHHHHHHHH 496
HHHHHHHH
Sbjct: 3 HHHHHHHHHH 12
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone
methyltransferase, RRM fold, telomere, nuclear protein;
3.0A {Saccharomyces cerevisiae}
Length = 136
Score = 29.7 bits (66), Expect = 1.1
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 434 CDVCGRKFARSDEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHH 493
C + G KF K + + + K + + + ++++ + HHHHH
Sbjct: 81 CFIMGFKFEVILNKHSILNNIISKFVEINVKKLQKLQENLKKAKEKE----AENHHHHHH 136
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.1 bits (64), Expect = 1.2
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 351 KLVPVKPRKYPNRPSKTPVHER-PYACPVENCDRRFSRS-DELTRHIRIHTGQKPFQCRI 408
K PV + ++ +CP C ++ + L +H+ Q+ F C
Sbjct: 11 KEPPVYAAGSLEEQWYLEIVDKGSVSCP--TCQAVGRKTIEGLKKHMENC-KQEMFTCHH 67
Query: 409 CMRSFSRSDHLTTHIRTHTGEKPFSCD 435
C + + H+ + P
Sbjct: 68 CGKQLRSLAGMKYHVMANHNSLPSGPS 94
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 29.9 bits (68), Expect = 1.2
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 446 EKKRHAKVHL----KQRSKKESKMAVMMSQQQAQQQ----QQQNHVHQQQQHHHHHHHHH 497
E++R A++ L +Q ++K + A ++S+ Q Q + V + + HHHHHH
Sbjct: 129 ERERRARITLAEAERQAAEKLREAAEIISEHPMALQLRTLQTISDVAGDKSNLEHHHHHH 188
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport,
rhesus protein, transpo protein; HET: BOG; 1.30A
{Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Length = 407
Score = 30.4 bits (69), Expect = 1.2
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 462 ESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHH 496
E + ++ Q + + V + HHHHHH
Sbjct: 373 ERLVLEAKTEIQGLKNRIDAAVLSAKSEGHHHHHH 407
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Length = 148
Score = 29.7 bits (66), Expect = 1.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 133 QSHHHHHHWSHPQFE 147
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 30.4 bits (68), Expect = 1.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 486 QQQHHHHHHHH 496
+ QHHHHHHHH
Sbjct: 231 KLQHHHHHHHH 241
Score = 29.6 bits (66), Expect = 2.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 485 QQQQHHHHHHH 495
+ Q HHHHHHH
Sbjct: 231 KLQHHHHHHHH 241
Score = 27.3 bits (60), Expect = 9.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 487 QQHHHHHHHHH 497
+ HHHHHHHH
Sbjct: 231 KLQHHHHHHHH 241
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.0 bits (59), Expect = 1.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 432 FSCDVCGRKFARSDEKKRHAKVH 454
+ C +C RKF ++ RH VH
Sbjct: 10 YDCHICERKFKNELDRDRHMLVH 32
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 30.3 bits (69), Expect = 1.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 233 QSHHHHHHWSHPQFE 247
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET:
DNA; 2.00A {Bacillus subtilis}
Length = 135
Score = 29.5 bits (66), Expect = 1.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 464 KMAVMMSQQQAQQQQQQNHVHQQQQHHHHHH 494
K+ + Q Q Q+++ Q+ +HHHHHH
Sbjct: 105 KLYEYIQLAQNQTQERKAEGEQKLEHHHHHH 135
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 30.4 bits (69), Expect = 1.4
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 488 QHHHHHHHHH 497
HHHHHHHHH
Sbjct: 3 HHHHHHHHHH 12
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 30.6 bits (70), Expect = 1.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 513 QSHHHHHHWSHPQFE 527
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5'
guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus
musculus} SCOP: d.110.2.1 d.110.2.1
Length = 368
Score = 30.4 bits (68), Expect = 1.6
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 471 QQQAQQQQQQNHV-HQQQQHHHHHHHHH 497
++ + Q ++H+ ++ + HHHHHH
Sbjct: 341 YKKVNEAQYRSHLANEMMMYLEHHHHHH 368
>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase,
GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia
coli}
Length = 26
Score = 26.6 bits (58), Expect = 1.6
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 488 QHHHHHHHHH 497
HHHHHHHHH
Sbjct: 3 HHHHHHHHHH 12
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 399 TGQKPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
+ +K QCR C F + L H H G+K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 26.7 bits (58), Expect = 2.4
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 427 TGEKPFSCDVCGRKFARSDEKKRHAKVHLKQRSKKES 463
+ EK C CG F + H +H+ Q++ S
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPS 44
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of
two (beta/ALFA)4 domains, metal transport; 1.70A
{Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A
2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Length = 284
Score = 30.0 bits (68), Expect = 1.8
Identities = 2/43 (4%), Positives = 8/43 (18%)
Query: 455 LKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHHH 497
+ ++ + + + H H
Sbjct: 66 PVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDED 108
Score = 29.3 bits (66), Expect = 3.0
Identities = 2/43 (4%), Positives = 9/43 (20%)
Query: 455 LKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHHH 497
+ + + + + + + H H
Sbjct: 67 VSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDH 109
Score = 28.5 bits (64), Expect = 4.4
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 479 QQNHVHQQQQHHHHHHHHH 497
+H H ++ HHH
Sbjct: 96 DDDHDHAEKSDEDHHHGDF 114
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 30.2 bits (67), Expect = 1.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 489 HHHHHHHHHPNMEG 502
HHHHHHHHH G
Sbjct: 3 HHHHHHHHHHAGAG 16
Score = 29.5 bits (65), Expect = 3.6
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 488 QHHHHHHHHH 497
HHHHHHHHH
Sbjct: 3 HHHHHHHHHH 12
>3c19_A Uncharacterized protein MK0293; protein structure initiative,
PSI-2, NEW YORK SGX research center for structu
genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Length = 186
Score = 29.5 bits (66), Expect = 1.9
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 30/136 (22%)
Query: 378 VENCDRRFSRSDELTRHIRIHTG-----QKPFQCRICM-RSFSRSDHLTTHIRTHTGEKP 431
V+ + ++++ R I + TG + + F +R GE+
Sbjct: 63 VDGGEDPDRVAEDVARDIMVLTGSTGVDRFDADGVYSVPSRF-------EDVRVVYGERE 115
Query: 432 FSCDVCGRKFARSDEK------------KRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQ 479
+ V K A ++E + + +E K V + +
Sbjct: 116 WRVSV---KIAETEEGEVVTVKAEFDECREIGEET--GIPPREVKAMVEAAARVGGWVDL 170
Query: 480 QNHVHQQQQHHHHHHH 495
+ + Q+ HHHHHH
Sbjct: 171 KEREIKVQEGHHHHHH 186
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural
genomics, joint C structural genomics, JCSG, protein
structure initiative; 1.83A {Thermotoga maritima} SCOP:
c.55.5.1 PDB: 1t3v_A
Length = 136
Score = 28.8 bits (64), Expect = 1.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 486 QQQHHHHHHHHH 497
+ H HHHH HH
Sbjct: 125 YEVHDHHHHEHH 136
>4dzi_A Putative TIM-barrel metal-dependent hydrolase; amidohydrolase,
bimetal binding site, enzyme FUNC initiative, EFI; HET:
SO4; 1.60A {Mycobacterium avium subsp}
Length = 423
Score = 29.9 bits (67), Expect = 2.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 408 QSHHHHHHWSHPQFE 422
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 29.9 bits (67), Expect = 2.1
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 488 QHHHHHHHHHPNMEGMPVV 506
HHHHHHHH P GM V
Sbjct: 2 DHHHHHHHHMPRTTGMNVA 20
>3fmb_A Dimeric protein of unknown function and ferredoxi fold;
YP_212648.1, stress responsive A/B barrel domain; HET:
MSE; 1.85A {Bacteroides fragilis}
Length = 118
Score = 28.6 bits (64), Expect = 2.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 490 HHHHHHHHPNMEGM 503
HHHHHH + +GM
Sbjct: 7 HHHHHHENLYFQGM 20
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.8 bits (58), Expect = 2.1
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 400 GQKPFQCRICMRSFSRSDHLTTHIRTHTGE 429
+ +C+ C + F S L H H GE
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface,
cell adhesion; 2.70A {Campylobacter jejuni subsp}
Length = 379
Score = 29.8 bits (66), Expect = 2.2
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 488 QHHHHHHHHH 497
HHHHHHHHH
Sbjct: 3 HHHHHHHHHH 12
Score = 27.8 bits (61), Expect = 10.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 490 HHHHHHHHPNMEG 502
HHHHHHHH + G
Sbjct: 3 HHHHHHHHHHSSG 15
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; 1.65A {Pyrobaculum calidifontis}
Length = 358
Score = 29.6 bits (67), Expect = 2.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 486 QQQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 342 FQSHHHHHHWSHPQFE 357
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter
SP}
Length = 150
Score = 28.9 bits (64), Expect = 2.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 490 HHHHHHHHPNMEGMP 504
HHHHHH + +GM
Sbjct: 7 HHHHHHENLYFQGMN 21
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 29.9 bits (66), Expect = 2.4
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 489 HHHHHHHHH 497
HHHHHHHHH
Sbjct: 2 HHHHHHHHH 10
Score = 28.0 bits (61), Expect = 8.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 490 HHHHHHHHPNMEG 502
HHHHHHHH + G
Sbjct: 2 HHHHHHHHHHQRG 14
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS
protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Length = 87
Score = 27.7 bits (62), Expect = 2.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 487 QQHHHHHHHHHPNM 500
HHHHHHHHH +
Sbjct: 2 GHHHHHHHHHHSSG 15
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519
protein structure initiative, NEW YORK SGX research
center structural genomics; 2.40A {Bacillus subtilis}
SCOP: a.195.1.1
Length = 189
Score = 29.1 bits (65), Expect = 2.6
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 463 SKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHH 496
S++A Q ++++Q + HHHHHH
Sbjct: 156 SRIAHTHQDLQDEEKEQDEKPVVSEGGSHHHHHH 189
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint
center for STR genomics, JCSG, protein structure
initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium
loti}
Length = 136
Score = 28.4 bits (63), Expect = 2.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 490 HHHHHHHHPNMEGMPV 505
HHHHHH + +GM +
Sbjct: 7 HHHHHHENLYFQGMTI 22
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type
transferase; 1.90A {Marchantia polymorpha}
Length = 413
Score = 29.6 bits (66), Expect = 2.7
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 490 HHHHHHHHPNMEGMPVVTTP 509
HHHHHHHH + +P +
Sbjct: 3 HHHHHHHHGGL--VPRGSHG 20
Score = 28.8 bits (64), Expect = 4.7
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 488 QHHHHHHHH 496
+HHHHHHHH
Sbjct: 2 KHHHHHHHH 10
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Length = 151
Score = 28.5 bits (63), Expect = 2.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 490 HHHHHHHHPNMEGM 503
HHHHHH + +GM
Sbjct: 7 HHHHHHENLYFQGM 20
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 29.4 bits (66), Expect = 2.8
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
Query: 488 QHHHHHHHHHPN--MEGMP----VVTTP 509
HHHHHHHHH + +EG V++P
Sbjct: 2 HHHHHHHHHHSSGHIEGRHMRVLFVSSP 29
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal
transductio colicin I receptor, receptor ligand,
membrane protein; HET: LDA; 2.50A {Escherichia coli}
Length = 113
Score = 28.2 bits (62), Expect = 2.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 490 HHHHHHHHPNMEGMPVVTTP 509
HHHHHHHH N + +P
Sbjct: 2 HHHHHHHHKNTPDGKTIVSP 21
Score = 27.4 bits (60), Expect = 5.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 489 HHHHHHHHHPNMEGMPVVT 507
HHHHHHHH +G +V+
Sbjct: 2 HHHHHHHHKNTPDGKTIVS 20
>2kcd_A Uncharacterized protein SSP0047; alpha beta, structural genomics,
unknown function, PSI-2, protein structure initiative;
NMR {Staphylococcus saprophyticus subsp}
Length = 120
Score = 28.1 bits (62), Expect = 2.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 480 QNHVHQQQQHHHHHHHH 496
Q ++ Q HHHHHH
Sbjct: 104 QRYLLTGGQLEHHHHHH 120
>3gz7_A Putative antibiotic biosynthesis monooxygenase; NP_888398.1,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE CIT; 2.15A {Bordetella
bronchiseptica}
Length = 115
Score = 28.0 bits (62), Expect = 3.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 490 HHHHHHHHPNMEGM 503
HHHHHH + +GM
Sbjct: 7 HHHHHHENLYFQGM 20
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 29.1 bits (66), Expect = 3.1
Identities = 2/16 (12%), Positives = 3/16 (18%)
Query: 484 HQQQQHHHHHHHHHPN 499
+ H N
Sbjct: 207 VVSTKPRFHFIADKQN 222
>3dao_A Putative phosphatse; structural genomics, joint center for S
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Length = 283
Score = 29.1 bits (66), Expect = 3.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 490 HHHHHHHHPNMEGM 503
HHHHHH + +GM
Sbjct: 7 HHHHHHENLYFQGM 20
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein;
structural genomics, protein structure initiative; HET:
RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Length = 433
Score = 29.2 bits (66), Expect = 3.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 418 QSHHHHHHWSHPQFE 432
>2rm8_A Sensory rhodopsin II transducer; protein, chemotaxis, chromophore,
membrane, methylation, photoreceptor protein, receptor;
NMR {Natronomonas pharaonis}
Length = 68
Score = 26.8 bits (59), Expect = 3.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 457 QRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHH 496
++S + S +++ A+Q Q++ + HHHHHH
Sbjct: 29 RQSVRTSLEDAKNAREDAEQAQKRAEEINTELLEHHHHHH 68
>2cnt_A Modification of 30S ribosomal subunit protein S18; N-alpha
acetylation, GCN5-N-acetyltransferase, ribosomal Pro
acetyltransferase, GNAT; HET: COA; 2.4A {Salmonella
typhimurium} PDB: 2cnm_A* 2cns_A*
Length = 160
Score = 28.4 bits (64), Expect = 3.6
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 488 QHHHHHHHHH 497
HHHHHHHHH
Sbjct: 151 HHHHHHHHHH 160
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM,
hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A
2kdf_A
Length = 132
Score = 28.0 bits (61), Expect = 3.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 489 HHHHHHHHHPNMEGMP 504
HHHHHHHHH + +
Sbjct: 3 HHHHHHHHHHSSGHIE 18
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 29.0 bits (65), Expect = 3.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 487 QQHHHHHHHHHP 498
HHHHHHHHH
Sbjct: 3 HHHHHHHHHHHH 14
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein;
structural genomics, unknown function, nysgxrc target
T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2
d.54.1.1
Length = 386
Score = 29.2 bits (66), Expect = 3.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 489 HHHHHHHHHPNM 500
HHHHHHHHH +
Sbjct: 2 HHHHHHHHHHGL 13
Score = 28.8 bits (65), Expect = 5.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 488 QHHHHHHHHHPNME 501
HHHHHHHHH +
Sbjct: 2 HHHHHHHHHHGLVP 15
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium
binding site, lyase; 1.95A {Ralstonia pickettii} PDB:
3rra_A
Length = 405
Score = 29.2 bits (66), Expect = 3.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 390 QSHHHHHHWSHPQFE 404
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 29.0 bits (64), Expect = 3.9
Identities = 12/59 (20%), Positives = 21/59 (35%)
Query: 438 GRKFARSDEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHH 496
K R + + A + K + + +Q + + + HHHHHHH
Sbjct: 316 NGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPENETTHHHHHHH 374
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 28.9 bits (65), Expect = 4.1
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 25/72 (34%)
Query: 19 IPAWLPGADQ-----ISN-SGGDGKTTSFVNLSHPPTRSIPEYLILVEMPK---LRVLKR 69
IP + + N GG KT S V L+H L + + LR+L
Sbjct: 101 IPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAH--------ALRVHQDLLRHDLRIL-- 150
Query: 70 PKGCSCIVDISP 81
++D+ P
Sbjct: 151 ------VIDLDP 156
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 29.1 bits (66), Expect = 4.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 502 QSHHHHHHWSHPQFE 516
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 29.2 bits (66), Expect = 4.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 471 QQQAQQQQQQNHVHQQQQHHHHHH 494
Q + Q + + + HHHHHH
Sbjct: 531 QMYHDHMRYQALMQEGEGHHHHHH 554
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane
protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU
DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A*
2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A*
1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A*
1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Length = 1057
Score = 29.1 bits (66), Expect = 4.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 467 VMMSQQQAQQQQQQNHVHQQQQHHHHHHHHH 497
V++ ++ +++ + H H H HHHHHH
Sbjct: 1027 VVVRRRFSRKNEDIEHSHTVDHHLEHHHHHH 1057
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 28.9 bits (65), Expect = 4.3
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 7/28 (25%)
Query: 489 HHHHHHHHHPNMEGMP-------VVTTP 509
HHHHHHHHH + + +
Sbjct: 2 HHHHHHHHHHSSGHIEGRHMRVLFASLG 29
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.0 bits (64), Expect = 4.3
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 402 KPFQCRICMRSFSRSDHLTTHIRT 425
+ C +C FS L+ H+R+
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRS 138
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1;
scaffold, complex, alpha/beta, endosome, membrane,
lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB:
1sko_A 2zl1_A 1vet_A 1veu_A
Length = 143
Score = 28.1 bits (62), Expect = 4.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 490 HHHHHHHHPNMEG 502
HHHHHHHH N+
Sbjct: 5 HHHHHHHHENLYF 17
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB,
ssDNA binding protein, OB-fold; 2.80A {Homo sapiens}
SCOP: b.40.4.3
Length = 181
Score = 28.5 bits (63), Expect = 4.4
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 14/64 (21%)
Query: 374 YACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDH---LTTHIRTHTGEK 430
ACP ++C+++ I ++C C F + L+ +I +
Sbjct: 44 QACPTQDCNKKV-----------IDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQ 92
Query: 431 PFSC 434
+C
Sbjct: 93 WVTC 96
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold,
oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis}
PDB: 3f4r_A* 3f4t_A*
Length = 226
Score = 28.3 bits (63), Expect = 4.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 486 QQQHHHHHHHH 496
+ +HHHHHHHH
Sbjct: 216 KLEHHHHHHHH 226
Score = 27.9 bits (62), Expect = 7.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 487 QQHHHHHHHHH 497
+ HHHHHHHH
Sbjct: 216 KLEHHHHHHHH 226
>2f4i_A Hypothetical protein TM0957; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MLY MSE; 2.25A {Thermotoga maritima} SCOP:
b.40.11.1
Length = 197
Score = 28.2 bits (61), Expect = 4.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 492 HHHHHHPNME 501
HHHHHH ME
Sbjct: 7 HHHHHHEEME 16
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-BIND protein; HET: CYS GOL;
1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Length = 283
Score = 28.5 bits (64), Expect = 4.8
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 489 HHHHHHHHH 497
HHHHHHHHH
Sbjct: 3 HHHHHHHHH 11
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis}
SCOP: d.79.7.1
Length = 164
Score = 27.8 bits (62), Expect = 5.0
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 471 QQQAQQQQQQNHVHQQQQHHHHHH 494
+Q HQ +HHHHHH
Sbjct: 144 TRQVVPAHNH---HQHLEHHHHHH 164
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION
channel mechanosensitive, membrane protein; 3.50A
{Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Length = 174
Score = 28.2 bits (62), Expect = 5.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 489 HHHHHHHHHPNMEGM 503
HHHHHHHHH + +
Sbjct: 3 HHHHHHHHHHSSGHI 17
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 25.1 bits (54), Expect = 5.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 401 QKPFQCRICMRSFSRSDHLTTHIRTH 426
+KPF C +C + +T H+RTH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic
helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB:
2ql2_A*
Length = 76
Score = 26.4 bits (58), Expect = 5.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 445 DEKKRHAKVHLKQRSKKESKMAVMMSQQQAQ------QQQQQNHVHQQQQHHHHHH 494
E R ++HLK K ++K+ ++ QQA +QQ + HHHHHH
Sbjct: 25 RELGRMCQMHLKSD-KAQTKLLIL---QQAVQVILGLEQQVRERNLNPLNHHHHHH 76
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 28.6 bits (64), Expect = 5.2
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 33 GGDGKTTSFVNLSHPPTRSIPEYLILVEMPKLRVLKRPKGCSCIVDISP 81
GG KT S V+L+H ++ + L+ R+L ++D+ P
Sbjct: 118 GGVSKTVSTVSLAH----AMRAHPHLLMEDL-RIL--------VIDLDP 153
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Length = 405
Score = 28.6 bits (64), Expect = 5.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 486 QQQHHHHHHHHH 497
HHHHHHHH
Sbjct: 392 DDDKHHHHHHHH 403
Score = 28.2 bits (63), Expect = 7.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 476 QQQQQNHVHQQQQHHHHHHHH 496
++ Q +HHHHHHHH
Sbjct: 383 IKETQFPGDDDDKHHHHHHHH 403
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 28.9 bits (64), Expect = 5.2
Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 11/124 (8%)
Query: 125 LHEEEEETSLSSTISMYPGSNPSHSDKISYRGIFTTTNSSPSHQPGAASSPGNNWMLTGT 184
+++ + S ++ + G T SP G SP
Sbjct: 1450 YLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSP--------- 1500
Query: 185 DKSLFPPLFISSGVLGQSNNSNQGPYSGSSPSHYDERSQQHEMLNINIECGALKQPSSSY 244
D + F PL + G G+ + G +SP +S + + S SY
Sbjct: 1501 DAAAFSPL-VQGGSEGREGFGDYGLLGAASPYKGV-QSPGYTSPFSSAMSPGYGLTSPSY 1558
Query: 245 SSCS 248
S S
Sbjct: 1559 SPSS 1562
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold,
structural genomics, J center for structural genomics,
JCSG; 1.90A {Arthrobacter SP}
Length = 188
Score = 28.2 bits (62), Expect = 5.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 490 HHHHHHHHPNMEGMP 504
HHHHHH + +GM
Sbjct: 7 HHHHHHENLYFQGMA 21
>2jro_A Uncharacterized protein; solution structure, structural genomics,
PSI-2, protein initiative, northeast structural genomics
consortium; NMR {Shewanella oneidensis}
Length = 78
Score = 26.8 bits (59), Expect = 5.3
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 459 SKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHH 494
K K+ + + + Q + +HHHHHH
Sbjct: 43 RKSLPKVKQAILELNELIEAQNHQTKTALEHHHHHH 78
>1y2i_A Hypothetical protein S0862; structural genomics, pentamer, protein
structure initiative, PSI, midwest center for structural
genomics; 2.30A {Shigella flexneri 2a str} SCOP:
d.230.5.1
Length = 133
Score = 27.7 bits (61), Expect = 5.5
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 9/30 (30%)
Query: 489 HHHHHH---------HHHPNMEGMPVVTTP 509
HHHHHH + + M TTP
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMQFSTTP 31
>4dad_A Putative pilus assembly-related protein; response regulator
receiver domain, CHEY-related protein, ST genomics;
2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Length = 146
Score = 27.8 bits (62), Expect = 5.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 490 HHHHHHHHPNMEGM 503
HHHHHH + +GM
Sbjct: 7 HHHHHHENLYFQGM 20
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 28.2 bits (62), Expect = 5.6
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 445 DEKKRHAKVHLKQRSKKESKMAVMMSQQ----------QAQQQQQQNHVHQQQQHHHHHH 494
EK+ + + + ++ ++M Q + ++Q++ + QHHHHHH
Sbjct: 155 SEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEECLQHHHHHH 214
Score = 27.8 bits (61), Expect = 8.0
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 442 ARSDEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHH 492
A+ DE + H ++ + E ++ + +Q++ Q HHHH
Sbjct: 164 AKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEECLQHHHHHH 214
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM,
S-adenosylmethionine, iron sulfur cluster,
oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB:
3rf9_A*
Length = 404
Score = 28.4 bits (64), Expect = 5.8
Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 41/130 (31%)
Query: 368 PVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRTHT 427
P PY + RFS L + TT +R
Sbjct: 313 PFPGAPYGRSSNSRIDRFS--KVLMSY-----------------------GFTTIVRKTR 347
Query: 428 GEKPFSCDV---CGRKFARSDEKKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVH 484
G+ D+ CG+ D R K L++R + E+ + + + +
Sbjct: 348 GD-----DIDAACGQ--LAGDVIDR-TKRTLRKRMQGEA-----IDIKAVGNSSSVDKLA 394
Query: 485 QQQQHHHHHH 494
+HHHHHH
Sbjct: 395 AALEHHHHHH 404
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 28.3 bits (63), Expect = 5.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 490 HHHHHHHHPNMEGMPV 505
HHHHHH + +GM +
Sbjct: 7 HHHHHHENLYFQGMKI 22
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 28.1 bits (62), Expect = 5.8
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 429 EKPFSCDVCGRKFARSDEK-KRHAKVHLKQRSKKESKM 465
++ C CG F R K K H + K M
Sbjct: 167 QEDLKCWRCGETFGRHFTKLKAHLQEEYDDWLDKSVSM 204
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 28.7 bits (65), Expect = 5.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 469 QSHHHHHHWSHPQFE 483
>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.55A {Sinorhizobium meliloti}
Length = 330
Score = 28.2 bits (62), Expect = 5.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 315 QSHHHHHHWSHPQFE 329
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two
domain P rotamase; 2.41A {Thermus thermophilus} PDB:
3cgn_A 3luo_A*
Length = 158
Score = 27.6 bits (62), Expect = 6.3
Identities = 8/18 (44%), Positives = 8/18 (44%), Gaps = 3/18 (16%)
Query: 479 QQNHVHQQQQHHHHHHHH 496
H H HHHHHH
Sbjct: 144 LHGHAHP---SGHHHHHH 158
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
packaging podoviridae, virus assembly, tail tube, trunk
domain; 7.50A {Enterobacteria phage P22}
Length = 725
Score = 28.5 bits (62), Expect = 6.4
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 447 KKRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQ 488
+ K ++ KK +AQQ +Q Q
Sbjct: 569 RDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQ 610
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase
family 9, phosphotransfer, transferase two-component
system; 2.30A {Rhodopseudomonas palustris}
Length = 164
Score = 27.7 bits (61), Expect = 6.4
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 463 SKMAVMMSQQQAQQQQQQNHVHQQQ------QHHHHHH 494
+ ++V+ +QA Q+ + ++ +HHHHHH
Sbjct: 127 TSLSVLTRAEQALLIQRLSKHDRESLAAALLEHHHHHH 164
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 27.7 bits (61), Expect = 6.5
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 488 QHHHHHHHHH 497
HHHHHHHHH
Sbjct: 169 HHHHHHHHHH 178
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 28.5 bits (64), Expect = 6.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 488 QHHHHHHHHHPN 499
HHHHHHHHH +
Sbjct: 1 HHHHHHHHHHSS 12
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 28.4 bits (64), Expect = 6.7
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 454 HLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHHHH 496
H+ K + + S+ + + + + HHHHHHH
Sbjct: 320 HIHAIFKGQRAKGELNSKLEGKPIPNLLGLDSTRTGHHHHHHH 362
>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S
cluster protein, structural GEN protein structure
initiative; 2.04A {Lactobacillus acidophilus}
Length = 141
Score = 27.4 bits (60), Expect = 6.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 470 SQQQAQQQQQQNHVHQQQQHHHHHHH 495
+ + Q +++Q + HHHHHH
Sbjct: 116 AALLKANKNVQMGINRQCEGHHHHHH 141
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 28.2 bits (63), Expect = 6.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 309 QSHHHHHHWSHPQFE 323
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C
amphipathic-helix, apoptosis, HOST-virus interaction,
protein transport, transport; 2.02A {Homo sapiens} PDB:
2oew_A 3c3o_A 3c3q_A
Length = 380
Score = 28.3 bits (62), Expect = 6.8
Identities = 9/9 (100%), Positives = 9/9 (100%)
Query: 489 HHHHHHHHH 497
HHHHHHHHH
Sbjct: 2 HHHHHHHHH 10
Score = 28.3 bits (62), Expect = 7.2
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 488 QHHHHHHHHH 497
HHHHHHHHH
Sbjct: 2 HHHHHHHHHH 11
>3alx_A Hemagglutinin, CDW150; viral protein-receptor complex, six-bladed
beta-propeller FO immunoglobulin fold, beta-sandwich;
HET: NAG; 3.15A {Measles virus} PDB: 3alw_A*
Length = 559
Score = 28.2 bits (62), Expect = 7.0
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 459 SKKESKMAVMMSQQQAQQQQQ---QNHVHQQQQHHHHHHH 495
S K+ + M+ ++ Q+ +++Q HHHHHH
Sbjct: 520 STKKDEGWYFMTLEKNISVQRFCLHLKLYEQGTKHHHHHH 559
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein,
DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase;
HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A*
2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Length = 474
Score = 28.0 bits (63), Expect = 7.2
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 474 AQQQQQQNHVH---QQQQHHHHHHHH 496
+ + H +HHHHHHHH
Sbjct: 446 DNYRVIRGHQFPGDDDDKHHHHHHHH 471
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio,
structural genomics, PSI-2, prote structure initiative;
2.00A {Mycobacterium tuberculosis}
Length = 102
Score = 26.7 bits (59), Expect = 7.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 491 HHHHHHHPNMEGM 503
HHHHHH + + M
Sbjct: 3 HHHHHHVDDDDKM 15
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.7 bits (53), Expect = 7.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 404 FQCRICMRSFSRSDHLTTHIRTH 426
++C +C RSF L+ H R H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>2d4u_A Methyl-accepting chemotaxis protein I; helix-turn-helix, signaling
protein; 1.95A {Escherichia coli} PDB: 3atp_A
Length = 176
Score = 27.4 bits (60), Expect = 7.4
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 472 QQAQQQQQQNHVHQQQQHHHHHHHHH 497
+ + V + HHHHHH
Sbjct: 151 MEQNDRLHDIAVSDNNASYSHHHHHH 176
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription
factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter
litoralis}
Length = 258
Score = 28.0 bits (62), Expect = 7.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 487 QQHHHHHHHHHPNMEGMPVV 506
+ HHHHHH +M G +
Sbjct: 2 RGSHHHHHHGMASMTGGQQM 21
>3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A
{Methylococcus capsulatus} PDB: 3uap_A*
Length = 227
Score = 27.7 bits (62), Expect = 7.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 212 QSHHHHHHWSHPQFE 226
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 27.2 bits (60), Expect = 7.6
Identities = 4/23 (17%), Positives = 5/23 (21%)
Query: 476 QQQQQNHVHQQQQHHHHHHHHHP 498
+H H H P
Sbjct: 4 HHHHHHHHHSSGHIEGRHMLEEP 26
Score = 27.2 bits (60), Expect = 8.8
Identities = 4/34 (11%), Positives = 8/34 (23%)
Query: 469 MSQQQAQQQQQQNHVHQQQQHHHHHHHHHPNMEG 502
M + H + +H + G
Sbjct: 1 MGHHHHHHHHHHSSGHIEGRHMLEEPAASFSQPG 34
>3zve_A 3C protease; hydrolase, michael inhibitor; HET: G84; 1.80A {Human
enterovirus} PDB: 3zv8_A* 3zva_A* 3zvb_A* 3zv9_A*
3zvd_A* 3zvc_A* 3zvf_A* 3zvg_A*
Length = 190
Score = 27.6 bits (61), Expect = 7.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 480 QNHVHQQQQHHHHHH 494
++ Q+HHHHHH
Sbjct: 176 HSYFTDTQKHHHHHH 190
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural
genomics, JO center for structural genomics, JCSG; 1.79A
{Mesorhizobium loti}
Length = 120
Score = 26.8 bits (59), Expect = 7.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 490 HHHHHHHHPNMEGM 503
HHHHHH + +GM
Sbjct: 7 HHHHHHENLYFQGM 20
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics,
PSI-2, protein initiative, northeast structural genomics
consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Length = 83
Score = 26.0 bits (57), Expect = 8.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 480 QNHVHQQQQHHHHHHHHH 497
Q+ +++ + H HHHHHH
Sbjct: 66 QSSINEDKAHLEHHHHHH 83
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA
binding protein, OB-fold, dioxan replication, DNA
binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3
PDB: 2pqa_B 2z6k_C
Length = 142
Score = 27.3 bits (60), Expect = 8.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 489 HHHHHHHHHPN 499
HHHHHHHHH +
Sbjct: 3 HHHHHHHHHHS 13
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella
burnetii}
Length = 210
Score = 27.5 bits (62), Expect = 8.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 483 VHQQQQHHHHHHHHH 497
++ Q HHHHHHHHH
Sbjct: 196 LYFQGHHHHHHHHHH 210
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA
binding, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.5.6.1 PDB: 2k6b_A
Length = 118
Score = 26.7 bits (59), Expect = 8.6
Identities = 2/28 (7%), Positives = 10/28 (35%)
Query: 461 KESKMAVMMSQQQAQQQQQQNHVHQQQQ 488
+ ++A + ++ Q ++
Sbjct: 9 RRQRLAELQAKHGDPGDAAQQEAKHREA 36
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Salmonella typhimurium LT2} SCOP:
b.38.1.6
Length = 62
Score = 25.6 bits (56), Expect = 8.7
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 470 SQQQAQQQQQQNHVHQQQQHHHHHH 494
+Q++ + +HHHHHH
Sbjct: 38 NQREINSNDVAQLIKADLEHHHHHH 62
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 28.1 bits (63), Expect = 8.7
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 448 KRHAKVHLKQRSKKESKMAVMMSQQQAQQQQQQNHVHQQQQHHHHHH 494
+++ + SK + + Q V +HHHHHH
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDALEHHHHHH 522
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 24.8 bits (53), Expect = 8.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 402 KPFQCRICMRSFSRSDHLTTHIRT-HTGEK 430
K +QC+ C + S +L THI+T H+ EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 27.5 bits (62), Expect = 9.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 487 QQHHHHHHHHHPNME 501
Q HHHHHH HP E
Sbjct: 272 QSHHHHHHWSHPQFE 286
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 27.2 bits (61), Expect = 9.0
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 5/21 (23%)
Query: 482 HVHQQQQHHHHH-----HHHH 497
HVH HHH H HHHH
Sbjct: 151 HVHGAHDHHHDHDHDHHHHHH 171
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Length = 450
Score = 27.7 bits (61), Expect = 9.2
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 479 QQNHVHQQQQHHHHHHHHHPNME 501
+ Q HHHHHH HP E
Sbjct: 427 RVAENLYFQSHHHHHHWSHPQFE 449
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like
protein, structural genomics, joint for structural
genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Length = 121
Score = 26.7 bits (59), Expect = 9.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 487 QQHHHHHHHHHPNMEGM 503
+ HHHHHH + +GM
Sbjct: 4 DKIHHHHHHENLYFQGM 20
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 9.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 402 KPFQCRICMRSFSRSDHLTTHIRTHTGEK 430
KPF+C +C + +L H+ H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 26.0 bits (57), Expect = 9.3
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 404 FQCRICMRSFSRSDHLTTHIRTHTGEKPFSCDVCGRKFARSDEKKRHAK 452
F C C S + + H+ + SC CG+ F D+ K H K
Sbjct: 11 FTCNACGESVKKI-QVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHVK 57
>3mst_A Putative nitrate transport protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.35A {Thermoplasma
volcanium}
Length = 244
Score = 27.5 bits (60), Expect = 9.5
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 490 HHHHHHHHPNMEGMPVVTTPL 510
HHHHHH + +GM V P
Sbjct: 7 HHHHHHENLYFQGM-DVGMPF 26
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Length = 120
Score = 26.5 bits (58), Expect = 9.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 490 HHHHHHHHPNMEGMP 504
HHHHHH + +GM
Sbjct: 7 HHHHHHENLYFQGMS 21
>3alz_B CDW150; viral protein-receptor complex, six-bladed beta-propeller
FO immunoglobulin fold, beta-sandwich, viral
protein-membrane complex; HET: NAG; 4.51A {Saguinus
oedipus}
Length = 149
Score = 27.0 bits (59), Expect = 9.8
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 459 SKKESKMAVMMSQQQAQQQQQ---QNHVHQQQQHHHHHHH 495
S K+ + M+ ++ Q+ +++Q HHHHHH
Sbjct: 110 STKKDEGWYFMTLEKNISVQRFCLHLKLYEQGTKHHHHHH 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.386
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,505,547
Number of extensions: 437480
Number of successful extensions: 10319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9737
Number of HSP's successfully gapped: 738
Length of query: 510
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 412
Effective length of database: 3,965,535
Effective search space: 1633800420
Effective search space used: 1633800420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.0 bits)