Query psy6791
Match_columns 293
No_of_seqs 314 out of 2200
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 18:27:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11628 transcriptional regul 100.0 1.3E-28 2.9E-33 201.1 9.5 86 194-284 1-87 (105)
2 PF01722 BolA: BolA-like prote 99.9 2.6E-27 5.5E-32 183.1 8.1 75 203-282 1-76 (76)
3 PRK11628 transcriptional regul 99.9 4.9E-27 1.1E-31 191.9 9.4 83 75-164 5-88 (105)
4 COG0271 BolA Stress-induced mo 99.9 8.6E-27 1.9E-31 186.5 8.7 82 198-284 6-89 (90)
5 COG0271 BolA Stress-induced mo 99.9 1E-26 2.2E-31 186.1 8.4 82 75-163 6-89 (90)
6 PF01722 BolA: BolA-like prote 99.9 4.3E-25 9.4E-30 170.7 8.4 75 80-161 1-76 (76)
7 KOG2313|consensus 99.9 3.9E-23 8.4E-28 168.0 8.0 84 194-282 9-100 (100)
8 KOG2313|consensus 99.9 3.1E-22 6.7E-27 162.7 7.1 81 75-161 13-100 (100)
9 KOG3348|consensus 99.9 6.2E-22 1.3E-26 157.1 8.6 80 196-286 4-83 (85)
10 COG5007 Predicted transcriptio 99.9 7.8E-22 1.7E-26 155.0 7.4 75 197-285 3-78 (80)
11 COG5007 Predicted transcriptio 99.8 1E-20 2.2E-25 148.7 7.6 79 64-165 1-79 (80)
12 KOG3348|consensus 99.8 1.6E-20 3.5E-25 149.1 7.4 78 75-165 6-83 (85)
13 PRK08444 hypothetical protein; 58.4 40 0.00087 33.0 7.5 24 58-81 74-97 (353)
14 PF06649 DUF1161: Protein of u 43.7 35 0.00076 25.7 3.5 14 73-86 4-17 (52)
15 cd02978 KaiB_like KaiB-like fa 42.1 41 0.00089 26.5 3.8 40 178-220 3-43 (72)
16 COG1004 Ugd Predicted UDP-gluc 41.1 20 0.00043 36.6 2.4 37 49-96 117-153 (414)
17 PHA01632 hypothetical protein 40.1 30 0.00066 26.7 2.7 22 58-79 22-43 (64)
18 PRK11190 Fe/S biogenesis prote 30.7 1.4E+02 0.0031 27.1 5.9 118 85-219 60-182 (192)
19 PRK05926 hypothetical protein; 27.3 3E+02 0.0065 27.2 8.0 20 56-75 91-110 (370)
20 PRK07360 FO synthase subunit 2 24.7 3.4E+02 0.0073 26.5 7.8 22 57-78 84-105 (371)
21 COG1060 ThiH Thiamine biosynth 23.1 78 0.0017 31.5 3.1 31 57-87 83-113 (370)
No 1
>PRK11628 transcriptional regulator BolA; Provisional
Probab=99.95 E-value=1.3e-28 Score=201.12 Aligned_cols=86 Identities=22% Similarity=0.397 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHhcCCCceEEEEeCCCCCCCC-CCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhccccccccccc
Q psy6791 194 VKLRDKIYNYIAKHFSPTVLHVVDSKKMHPID-NDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTM 272 (293)
Q Consensus 194 ~~~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~-g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~AL 272 (293)
|+..++|+++|+++|+|.+|+|+|+|++|+++ |+++||+|+|||+.|+|||+|+|||+||++|+++|.++|| ||
T Consensus 1 mm~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~g~~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~~~IH-----AL 75 (105)
T PRK11628 1 MMIREQIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVH-----AL 75 (105)
T ss_pred CCcHHHHHHHHHhhCCCcEEEEEECcccccCCCCCCceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHhCCcc-----ce
Confidence 56789999999999999999999999999998 8899999999999999999999999999999999998899 99
Q ss_pred ceeecchHHHhc
Q psy6791 273 LMHDYLRDFINE 284 (293)
Q Consensus 273 sIktyTpeE~~~ 284 (293)
+|+||||+||+.
T Consensus 76 si~t~tp~Ew~~ 87 (105)
T PRK11628 76 ALHTYTIKEWEG 87 (105)
T ss_pred eeecCCHHHHHH
Confidence 999999999984
No 2
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=99.94 E-value=2.6e-27 Score=183.13 Aligned_cols=75 Identities=24% Similarity=0.408 Sum_probs=68.9
Q ss_pred HHHhcCCCceEEEEeCCCCCCCC-CCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhcccccccccccceeecchHH
Q psy6791 203 YIAKHFSPTVLHVVDSKKMHPID-NDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLRDF 281 (293)
Q Consensus 203 kL~~~l~p~~LeV~DeS~~H~~~-g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALsIktyTpeE 281 (293)
||+++|+|+.|+|+|+|++|++| ++|+||+|+|||+.|+|||+|+|||+||++|+++|+++|| ||+|+||||+|
T Consensus 1 Kl~~~l~~~~l~V~d~S~~H~~h~~g~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i~~~iH-----Alsi~t~tp~E 75 (76)
T PF01722_consen 1 KLKAALPPTHLEVEDESHKHAGHAGGGSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEIKDGIH-----ALSIKTYTPEE 75 (76)
T ss_dssp HHHHHHTTSEEEEEE-SSSSSS-CCSSSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHHGCTCS-----EEEEEEE-HHH
T ss_pred ChhHhCCCcEEEEEECcccccCCCCCCceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHhcCCce-----EEEEEcCCccc
Confidence 68889999999999999999998 6799999999999999999999999999999999998999 99999999999
Q ss_pred H
Q psy6791 282 I 282 (293)
Q Consensus 282 ~ 282 (293)
|
T Consensus 76 w 76 (76)
T PF01722_consen 76 W 76 (76)
T ss_dssp H
T ss_pred C
Confidence 9
No 3
>PRK11628 transcriptional regulator BolA; Provisional
Probab=99.94 E-value=4.9e-27 Score=191.89 Aligned_cols=83 Identities=25% Similarity=0.350 Sum_probs=76.7
Q ss_pred HHHHHhhhhccceeecccceeeeeccccCCCCCC-CCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCcccee
Q psy6791 75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDY-WPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDI 153 (293)
Q Consensus 75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~-~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsI 153 (293)
+.|+++|.. +|+|.+++|.|+|++|++++ +++||+|+|||+.|+|+++|+|||+||++|+++|+ +.+|||+|
T Consensus 5 ~~I~~~L~~-----~l~~~~l~V~d~S~~H~~~~g~~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~--~~IHALsi 77 (105)
T PRK11628 5 EQIEEKLRA-----AFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELS--TTVHALAL 77 (105)
T ss_pred HHHHHHHHh-----hCCCcEEEEEECcccccCCCCCCceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHh--CCccceee
Confidence 556688888 89999999999999999875 68999999999999999999999999999999998 47999999
Q ss_pred EEeChHHHHHh
Q psy6791 154 HADTPEEWNDF 164 (293)
Q Consensus 154 HA~TP~EW~~~ 164 (293)
+||||+||++.
T Consensus 78 ~t~tp~Ew~~~ 88 (105)
T PRK11628 78 HTYTIKEWEGL 88 (105)
T ss_pred ecCCHHHHHHh
Confidence 99999999864
No 4
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=99.94 E-value=8.6e-27 Score=186.53 Aligned_cols=82 Identities=23% Similarity=0.451 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCC--CCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhccccccccccccee
Q psy6791 198 DKIYNYIAKHFSPTVLHVVDSKKMHPID--NDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMH 275 (293)
Q Consensus 198 e~Ik~kL~~~l~p~~LeV~DeS~~H~~~--g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALsIk 275 (293)
++|+++|+++|+|..++|+|+|++|+++ |||+||+|+|||+.|+|||+|+|||+||++|+|+|+++|| ||+|+
T Consensus 6 ~~Ie~~l~~~f~p~~l~i~deS~~h~~~~~g~~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~~iH-----ALal~ 80 (90)
T COG0271 6 ERIEKKLRAAFPPSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRLVYSALKDELSGGIH-----ALALH 80 (90)
T ss_pred HHHHHHHHhcCCCceEEEEecccccccCCCCCCCeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhccce-----eeEeE
Confidence 5899999999999999999999999998 5999999999999999999999999999999999998999 99999
Q ss_pred ecchHHHhc
Q psy6791 276 DYLRDFINE 284 (293)
Q Consensus 276 tyTpeE~~~ 284 (293)
||||+||..
T Consensus 81 t~t~~e~~~ 89 (90)
T COG0271 81 TYTPEEWKG 89 (90)
T ss_pred eeccchhcc
Confidence 999998863
No 5
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=99.94 E-value=1e-26 Score=186.10 Aligned_cols=82 Identities=32% Similarity=0.408 Sum_probs=77.4
Q ss_pred HHHHHhhhhccceeecccceeeeeccccCCCCC--CCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccce
Q psy6791 75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVD--YWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAID 152 (293)
Q Consensus 75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~--~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALs 152 (293)
.+|+.+|++ +|.|.+++|+|||++|+++ +||+||+|+|||+.|+|+|+|+|||+||++|+|+|.+ ++|||+
T Consensus 6 ~~Ie~~l~~-----~f~p~~l~i~deS~~h~~~~~g~~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~--~iHALa 78 (90)
T COG0271 6 ERIEKKLRA-----AFPPSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRLVYSALKDELSG--GIHALA 78 (90)
T ss_pred HHHHHHHHh-----cCCCceEEEEecccccccCCCCCCCeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhc--cceeeE
Confidence 489999999 9999999999999999998 5899999999999999999999999999999999993 599999
Q ss_pred eEEeChHHHHH
Q psy6791 153 IHADTPEEWND 163 (293)
Q Consensus 153 IHA~TP~EW~~ 163 (293)
|++|||+||..
T Consensus 79 l~t~t~~e~~~ 89 (90)
T COG0271 79 LHTYTPEEWKG 89 (90)
T ss_pred eEeeccchhcc
Confidence 99999999974
No 6
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=99.92 E-value=4.3e-25 Score=170.73 Aligned_cols=75 Identities=32% Similarity=0.402 Sum_probs=66.4
Q ss_pred hhhhccceeecccceeeeeccccCCCCCC-CCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccceeEEeCh
Q psy6791 80 KLKAVNFTIEMNYEQIRFVEKYYMDHVDY-WPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTP 158 (293)
Q Consensus 80 kL~~~~~~i~~~p~~l~v~neS~~h~v~~-~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsIHA~TP 158 (293)
||++ +|+|.+++|.|+|++|.... +|+||+|+|||+.|+|+|+|+|||+||++|+++|++ ++|||+|+++||
T Consensus 1 Kl~~-----~l~~~~l~V~d~S~~H~~h~~g~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i~~--~iHAlsi~t~tp 73 (76)
T PF01722_consen 1 KLKA-----ALPPTHLEVEDESHKHAGHAGGGSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEIKD--GIHALSIKTYTP 73 (76)
T ss_dssp HHHH-----HHTTSEEEEEE-SSSSSS-CCSSSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHHGC--TCSEEEEEEE-H
T ss_pred ChhH-----hCCCcEEEEEECcccccCCCCCCceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHhcC--CceEEEEEcCCc
Confidence 5666 88999999999999999866 589999999999999999999999999999999984 499999999999
Q ss_pred HHH
Q psy6791 159 EEW 161 (293)
Q Consensus 159 ~EW 161 (293)
+||
T Consensus 74 ~Ew 76 (76)
T PF01722_consen 74 EEW 76 (76)
T ss_dssp HHH
T ss_pred ccC
Confidence 999
No 7
>KOG2313|consensus
Probab=99.88 E-value=3.9e-23 Score=167.99 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHhcCCCceEEEEeCCCCCCCC----C---CCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhc-ccc
Q psy6791 194 VKLRDKIYNYIAKHFSPTVLHVVDSKKMHPID----N---DNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINE-GVQ 265 (293)
Q Consensus 194 ~~~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~----g---~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~-~IH 265 (293)
+.++.+|+++|..+|.|..+++.|+|++|+|| | +++||+|.|||+.|+|||+++||||||++|+|++.+ ++|
T Consensus 9 g~~~~ri~~~l~~~lkp~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl~~~gvH 88 (100)
T KOG2313|consen 9 GPRESRIREKLFEALKPLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYKALKEELAGTGVH 88 (100)
T ss_pred CcHHHHHHHHhHhhcCcceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHHHHHHHhhcccee
Confidence 56788999999999999999999999998886 4 899999999999999999999999999999999999 799
Q ss_pred cccccccceeecchHHH
Q psy6791 266 FRLHRTMLMHDYLRDFI 282 (293)
Q Consensus 266 ~~~~~ALsIktyTpeE~ 282 (293)
||+|.+.||+||
T Consensus 89 -----AL~i~aKTP~e~ 100 (100)
T KOG2313|consen 89 -----ALSIMAKTPSEV 100 (100)
T ss_pred -----EEEeeccCCCCC
Confidence 999999999998
No 8
>KOG2313|consensus
Probab=99.86 E-value=3.1e-22 Score=162.74 Aligned_cols=81 Identities=23% Similarity=0.271 Sum_probs=73.5
Q ss_pred HHHHHhhhhccceeecccceeeeeccccC---CCCCC----CCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccC
Q psy6791 75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYM---DHVDY----WPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREA 147 (293)
Q Consensus 75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~---h~v~~----~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~ 147 (293)
.+|..||.. ++.|..|++.|+||. |+++. +|+||+|.|||++|+|+++++||||||++|+||++. .+
T Consensus 13 ~ri~~~l~~-----~lkp~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl~~-~g 86 (100)
T KOG2313|consen 13 SRIREKLFE-----ALKPLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYKALKEELAG-TG 86 (100)
T ss_pred HHHHHHhHh-----hcCcceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHHHHHHHhhc-cc
Confidence 456688888 999999999999999 77764 489999999999999999999999999999999993 16
Q ss_pred CccceeEEeChHHH
Q psy6791 148 GCAIDIHADTPEEW 161 (293)
Q Consensus 148 iHALsIHA~TP~EW 161 (293)
+|||+|-|.||+||
T Consensus 87 vHAL~i~aKTP~e~ 100 (100)
T KOG2313|consen 87 VHALSIMAKTPSEV 100 (100)
T ss_pred eeEEEeeccCCCCC
Confidence 89999999999999
No 9
>KOG3348|consensus
Probab=99.86 E-value=6.2e-22 Score=157.11 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhccccccccccccee
Q psy6791 196 LRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMH 275 (293)
Q Consensus 196 ~~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~~IH~~~~~ALsIk 275 (293)
-.+.|+++|++.|.|.+|+|+|.|. |||+.|+|.|||+.|+|+|+|+|||+||++|+++|++ || ||+++
T Consensus 4 ~e~~l~~~L~~~l~p~~v~V~D~Sg-----GCG~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Eeik~-iH-----alt~k 72 (85)
T KOG3348|consen 4 TEERLEELLTEALEPEHVEVQDVSG-----GCGSMFDVVIVSAAFEGKSLLARHRLVNSILAEEIKE-IH-----ALTIK 72 (85)
T ss_pred hHHHHHHHHHhhcCceEEEEEEcCC-----CccceEEEEEEccccCChHHHHHHHHHHHHHHHHHHH-Hh-----hheee
Confidence 4788999999999999999999997 9999999999999999999999999999999999984 99 99999
Q ss_pred ecchHHHhccc
Q psy6791 276 DYLRDFINEGV 286 (293)
Q Consensus 276 tyTpeE~~~~~ 286 (293)
||||++|....
T Consensus 73 t~t~~~w~~~~ 83 (85)
T KOG3348|consen 73 TYTPEEWSKAS 83 (85)
T ss_pred ecChhhhcccc
Confidence 99999998654
No 10
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=99.86 E-value=7.8e-22 Score=154.97 Aligned_cols=75 Identities=17% Similarity=0.321 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCCCCCCceEEEEEccccCCCCHhHHHHHHHHHHHHHHhc-cccccccccccee
Q psy6791 197 RDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINE-GVQFRLHRTMLMH 275 (293)
Q Consensus 197 ~e~Ik~kL~~~l~p~~LeV~DeS~~H~~~g~gsHF~ViIVS~~F~GlS~VqRHRlVy~~L~dei~~-~IH~~~~~ALsIk 275 (293)
.++|+..|++.|+.++++| .|+|+||.+++||+.|+|||+|+|||+||+.|.++|.+ .|| ||||+
T Consensus 3 ~e~Ik~ll~~~L~~e~v~V---------~Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IH-----Alsik 68 (80)
T COG5007 3 NEEIKSLLENALPLEEVEV---------EGDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIH-----ALSIK 68 (80)
T ss_pred HHHHHHHHHhcCCccEEEE---------ecCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCceE-----EEEee
Confidence 5789999999999999999 47899999999999999999999999999999999995 899 99999
Q ss_pred ecchHHHhcc
Q psy6791 276 DYLRDFINEG 285 (293)
Q Consensus 276 tyTpeE~~~~ 285 (293)
+|||+||...
T Consensus 69 t~Tp~eW~~~ 78 (80)
T COG5007 69 TYTPAEWARD 78 (80)
T ss_pred ecCHHHhhhc
Confidence 9999999853
No 11
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=99.83 E-value=1e-20 Score=148.74 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=67.6
Q ss_pred cChHHHHHHHHHHHHHhhhhccceeecccceeeeeccccCCCCCCCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHh
Q psy6791 64 PTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEML 143 (293)
Q Consensus 64 ~~~~~~~~~i~~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~ 143 (293)
|+.+||+ +-|+.+|.-..++ |.+-|+||.+++||+.|+|+++|+|||+||+.|.+.|.
T Consensus 1 M~~e~Ik----~ll~~~L~~e~v~------------------V~Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~ 58 (80)
T COG5007 1 MDNEEIK----SLLENALPLEEVE------------------VEGDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIA 58 (80)
T ss_pred CCHHHHH----HHHHhcCCccEEE------------------EecCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhh
Confidence 5778887 7777788663333 33567899999999999999999999999999999999
Q ss_pred hccCCccceeEEeChHHHHHhh
Q psy6791 144 KREAGCAIDIHADTPEEWNDFR 165 (293)
Q Consensus 144 ~~~~iHALsIHA~TP~EW~~~~ 165 (293)
+ +.||||+|.+|||+||++.+
T Consensus 59 ~-~~IHAlsikt~Tp~eW~~~~ 79 (80)
T COG5007 59 D-NEIHALSIKTYTPAEWARDR 79 (80)
T ss_pred c-CceEEEEeeecCHHHhhhcc
Confidence 7 58999999999999999764
No 12
>KOG3348|consensus
Probab=99.82 E-value=1.6e-20 Score=149.10 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=71.3
Q ss_pred HHHHHhhhhccceeecccceeeeeccccCCCCCCCCCeEEEEEEccccCCCCHhHHHHHHHHHHHHHHhhccCCccceeE
Q psy6791 75 KPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIH 154 (293)
Q Consensus 75 ~~I~~kL~~~~~~i~~~p~~l~v~neS~~h~v~~~esHFkVvIVS~~F~G~s~lqRHRlVy~aL~dei~~~~~iHALsIH 154 (293)
+.|+++|+. ++.|.+++|.+. +++||+.|.|+|||+.|+|+++|+|||+||++|+++|. .+||+++.
T Consensus 6 ~~l~~~L~~-----~l~p~~v~V~D~-----SgGCG~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Eeik---~iHalt~k 72 (85)
T KOG3348|consen 6 ERLEELLTE-----ALEPEHVEVQDV-----SGGCGSMFDVVIVSAAFEGKSLLARHRLVNSILAEEIK---EIHALTIK 72 (85)
T ss_pred HHHHHHHHh-----hcCceEEEEEEc-----CCCccceEEEEEEccccCChHHHHHHHHHHHHHHHHHH---HHhhheee
Confidence 568888888 888999999877 56799999999999999999999999999999999998 48999999
Q ss_pred EeChHHHHHhh
Q psy6791 155 ADTPEEWNDFR 165 (293)
Q Consensus 155 A~TP~EW~~~~ 165 (293)
+|||++|.+..
T Consensus 73 t~t~~~w~~~~ 83 (85)
T KOG3348|consen 73 TYTPEEWSKAS 83 (85)
T ss_pred ecChhhhcccc
Confidence 99999998754
No 13
>PRK08444 hypothetical protein; Provisional
Probab=58.41 E-value=40 Score=33.02 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=16.0
Q ss_pred CccccccChHHHHHHHHHHHHHhh
Q psy6791 58 DLVPYIPTLEELRYVLKKPIMRKL 81 (293)
Q Consensus 58 ~~~~~~~~~~~~~~~i~~~I~~kL 81 (293)
+..+|.+|.|||...+++.-....
T Consensus 74 ~~~~y~ls~eeI~~~a~~a~~~G~ 97 (353)
T PRK08444 74 NPNPYTMSHEEILEIVKNSVKRGI 97 (353)
T ss_pred CCccccCCHHHHHHHHHHHHHCCC
Confidence 335688999999966665444333
No 14
>PF06649 DUF1161: Protein of unknown function (DUF1161); InterPro: IPR010595 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=43.75 E-value=35 Score=25.68 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=10.7
Q ss_pred HHHHHHHhhhhccc
Q psy6791 73 LKKPIMRKLKAVNF 86 (293)
Q Consensus 73 i~~~I~~kL~~~~~ 86 (293)
++..|++|+.+..|
T Consensus 4 lk~eI~~KI~anGV 17 (52)
T PF06649_consen 4 LKAEIEQKIIANGV 17 (52)
T ss_pred HHHHHHHHHHHcCC
Confidence 44899999988444
No 15
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=42.08 E-value=41 Score=26.45 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=30.8
Q ss_pred cccccccccccccccchhHHHHHHHHHHhcCCC-ceEEEEeCCC
Q psy6791 178 DLRLRAAKTTPVSVKDVKLRDKIYNYIAKHFSP-TVLHVVDSKK 220 (293)
Q Consensus 178 ~~~l~~~~~tp~~~~~~~~~e~Ik~kL~~~l~p-~~LeV~DeS~ 220 (293)
.|||+.+..||-|.+. .+.|++.+++.++. ..++|+|.+.
T Consensus 3 ~L~Lyv~g~tp~S~~a---i~nl~~i~e~~l~~~~~LeVIDv~~ 43 (72)
T cd02978 3 VLRLYVAGRTPKSERA---LQNLKRILEELLGGPYELEVIDVLK 43 (72)
T ss_pred EEEEEECCCCchHHHH---HHHHHHHHHHhcCCcEEEEEEEccc
Confidence 4899999999997644 45677777777754 4899999864
No 16
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=41.11 E-value=20 Score=36.61 Aligned_cols=37 Identities=35% Similarity=0.429 Sum_probs=29.0
Q ss_pred ccCCCCCCCCccccccChHHHHHHHHHHHHHhhhhccceeecccceee
Q psy6791 49 KDQSTLPDGDLVPYIPTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIR 96 (293)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~I~~kL~~~~~~i~~~p~~l~ 96 (293)
-..||+|-| |-++++ +.|......-.|.|.+||+||+
T Consensus 117 V~KSTVPvG-------t~~~v~----~~i~~~~~~~~f~v~~NPEFLR 153 (414)
T COG1004 117 VIKSTVPVG-------TTEEVR----AKIREENSGKDFEVASNPEFLR 153 (414)
T ss_pred EEcCCCCCC-------chHHHH----HHHHhhcccCCceEecChHHhc
Confidence 346899988 788888 5555555555899999999998
No 17
>PHA01632 hypothetical protein
Probab=40.08 E-value=30 Score=26.73 Aligned_cols=22 Identities=50% Similarity=0.575 Sum_probs=17.8
Q ss_pred CccccccChHHHHHHHHHHHHH
Q psy6791 58 DLVPYIPTLEELRYVLKKPIMR 79 (293)
Q Consensus 58 ~~~~~~~~~~~~~~~i~~~I~~ 79 (293)
+-||--||-+|||+++-+.+..
T Consensus 22 eqvp~kpteeelrkvlpkilkd 43 (64)
T PHA01632 22 EQVPQKPTEEELRKVLPKILKD 43 (64)
T ss_pred hhcCCCCCHHHHHHHHHHHHHH
Confidence 4589999999999988776543
No 18
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=30.67 E-value=1.4e+02 Score=27.13 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=71.7
Q ss_pred cceeecccceeeeeccccCCCCCC-CCCeEEEEEEccccCCC---CHhHHHHHHHHHHHHHHhhccCCccceeEEeChHH
Q psy6791 85 NFTIEMNYEQIRFVEKYYMDHVDY-WPLCVKLHIVSRLFQNK---TKDERHAMVHEALRDEMLKREAGCAIDIHADTPEE 160 (293)
Q Consensus 85 ~~~i~~~p~~l~v~neS~~h~v~~-~esHFkVvIVS~~F~G~---s~lqRHRlVy~aL~dei~~~~~iHALsIHA~TP~E 160 (293)
.+.+-++|.-+..++.+-++.+.. .++-|++. -|.=.+. +.-+..+.|..+|.+.+. |.=
T Consensus 60 gv~v~Vd~~S~~~L~G~~IDyve~~~g~gF~f~--NPNa~~~~~~~~~~~~~~i~~~l~~~ir--------------P~l 123 (192)
T PRK11190 60 GFSAYVDELSAPFLEDAEIDFVTDQLGSQLTLK--APNAKMRKVADDAPLMERVEYVLQSQIN--------------PQL 123 (192)
T ss_pred CEEEEECcchHhHhCCCEEEEeecCCCCceEEE--CCCCCCCCCcccHHHHHHHHHHHHhccC--------------hhH
Confidence 466777888888888888888876 46677663 3332221 133466778888886664 211
Q ss_pred HHHhhcCCCCCcccCCccccccc-cccccccccchhHHHHHHHHHHhcCCCceEEEEeCC
Q psy6791 161 WNDFRANNDFDEISGKPDLRLRA-AKTTPVSVKDVKLRDKIYNYIAKHFSPTVLHVVDSK 219 (293)
Q Consensus 161 W~~~~~~~~~~~~~~~~~~~l~~-~~~tp~~~~~~~~~e~Ik~kL~~~l~p~~LeV~DeS 219 (293)
+. ....-.+-.+++.-.+++|. -.-..|.+..+.+..-|++.|+..+|+....|++..
T Consensus 124 ~~-dGGdielv~v~~~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~~v~ 182 (192)
T PRK11190 124 AG-HGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVRDLT 182 (192)
T ss_pred Hh-cCCcEEEEEEcCCCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEEEec
Confidence 11 12222223333222334443 233456667788899999999999997666776653
No 19
>PRK05926 hypothetical protein; Provisional
Probab=27.30 E-value=3e+02 Score=27.23 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=15.6
Q ss_pred CCCccccccChHHHHHHHHH
Q psy6791 56 DGDLVPYIPTLEELRYVLKK 75 (293)
Q Consensus 56 ~~~~~~~~~~~~~~~~~i~~ 75 (293)
.|+...|.++.|||...+++
T Consensus 91 ~~~~~~~~ls~eeI~~~a~~ 110 (370)
T PRK05926 91 PGDPKGWFYTPDQLVQSIKE 110 (370)
T ss_pred CCCcccccCCHHHHHHHHHH
Confidence 46677899999999965554
No 20
>PRK07360 FO synthase subunit 2; Reviewed
Probab=24.69 E-value=3.4e+02 Score=26.50 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=15.7
Q ss_pred CCccccccChHHHHHHHHHHHH
Q psy6791 57 GDLVPYIPTLEELRYVLKKPIM 78 (293)
Q Consensus 57 ~~~~~~~~~~~~~~~~i~~~I~ 78 (293)
++.-.|.+|.|||...+++.-+
T Consensus 84 ~~~~~y~ls~eeI~~~a~~a~~ 105 (371)
T PRK07360 84 GDHGAFWLTIAEILEKAAEAVK 105 (371)
T ss_pred CCCCCeeCCHHHHHHHHHHHHh
Confidence 4566788999999966655433
No 21
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=23.09 E-value=78 Score=31.51 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=21.9
Q ss_pred CCccccccChHHHHHHHHHHHHHhhhhccce
Q psy6791 57 GDLVPYIPTLEELRYVLKKPIMRKLKAVNFT 87 (293)
Q Consensus 57 ~~~~~~~~~~~~~~~~i~~~I~~kL~~~~~~ 87 (293)
|+--.|.+|.|||...+++......+.+.+.
T Consensus 83 ~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~ 113 (370)
T COG1060 83 GDPKAYTLSPEEILEEVREAVKRGITEVLIV 113 (370)
T ss_pred CCccccccCHHHHHHHHHHHHHcCCeEEEEe
Confidence 4445699999999977777766666664333
Done!