RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6791
(293 letters)
>gnl|CDD|216662 pfam01722, BolA, BolA-like protein. This family consist of the
morphoprotein BolA from E. coli and its various
homologues. In E. coli over expression of this protein
causes round morphology and may be involved in switching
the cell between elongation and septation systems during
cell division. The expression of BolA is growth rate
regulated and is induced during the transition into the
the stationary phase. BolA is also induced by stress
during early stages of growth and may have a general
role in stress response. It has also been suggested that
BolA can induce the transcription of penicillin binding
proteins 6 and 5.
Length = 72
Score = 44.9 bits (107), Expect = 1e-06
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC--AIDIHADTPEEW 161
K+ +VS F+ K+ +RH +V+ AL++E+ A A+ I TPEEW
Sbjct: 27 KVVVVSDAFEGKSLVKRHRLVYAALKEEL----ASGIHALSIKTYTPEEW 72
Score = 34.5 bits (80), Expect = 0.006
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 204 IAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEG 263
+ P L V D D F V++VS+ F ++ +R L++ L++ + G
Sbjct: 3 LEAALPPAHLEVEDESHK----GDGSHFKVVVVSDAFEGKSLVKRHRLVYAALKEELASG 58
Query: 264 V 264
+
Sbjct: 59 I 59
>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal
transduction mechanisms].
Length = 90
Score = 40.4 bits (95), Expect = 8e-05
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEW 161
K+ IVS FQ K+ RH +V+ AL+DE+ A+ +H TPEEW
Sbjct: 42 KVVIVSEAFQGKSLVARHRLVYSALKDEL--SGGIHALALHTYTPEEW 87
Score = 34.3 bits (79), Expect = 0.010
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 197 RDKIYNYIAKHFSPTVLHVVDSKKMH--PIDNDNPAFDVLIVSNHFNNLTITQRTMLMHD 254
R++I + F P+ L ++D H F V+IVS F ++ R L++
Sbjct: 5 RERIEKKLRAAFPPSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRLVYS 64
Query: 255 YLRDFINEGV 264
L+D ++ G+
Sbjct: 65 ALKDELSGGI 74
>gnl|CDD|227340 COG5007, COG5007, Predicted transcriptional regulator, BolA
superfamily [Transcription].
Length = 80
Score = 30.4 bits (69), Expect = 0.18
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 117 IVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEW 161
VS F K++ +R +V+ L + E A+ I TP EW
Sbjct: 32 AVSEEFAGKSRVKRQQLVYAPLMAYIADNEIH-ALSIKTYTPAEW 75
>gnl|CDD|165129 PHA02764, PHA02764, hypothetical protein; Provisional.
Length = 399
Score = 32.2 bits (73), Expect = 0.27
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 69 LRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYY 102
L YVL +PI+ L +NF I+ +EQ VE +
Sbjct: 101 LTYVLSQPILGDLVLLNFNIQNQFEQFLIVESLF 134
>gnl|CDD|237812 PRK14772, PRK14772, lipoprotein signal peptidase; Provisional.
Length = 190
Score = 30.2 bits (68), Expect = 0.96
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 8 NELLDEYQEPTGPDNRPTFARLHIVARNFC----GFDEAELTTLFKDQSTLPDGDLVPYI 63
+E +PT P RP RL I+ F FD +LT L+ ST+ +G+ +P +
Sbjct: 3 DEFAATATQPTPPTRRPRRWRLLILFAGFAVFAYVFD--QLTKLWV-TSTMVEGERIPVL 59
Query: 64 PTLEELRYV 72
P L Y+
Sbjct: 60 PPLLHWYYI 68
>gnl|CDD|132845 cd07206, Pat_TGL3-4-5_SDP1, Triacylglycerol lipase 3, 4, and 5 and
Sugar-Dependent 1 lipase. Triacylglycerol lipases are
involved in triacylglycerol mobilization and
degradation; they are found in lipid particles. TGL4 is
30% homologus to TGL3, whereas TGL5 is 26% homologus to
TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like
acyl-hydrolase domain that initiates the breakdown of
storage oil in germinating Arabidopsis seeds. This
family includes subfamilies of proteins: TGL3, TGL4,
TGL5, and SDP1.
Length = 298
Score = 29.5 bits (67), Expect = 2.1
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 55 PDGDLVPYIPTLEELRYVLKK-----PIMR--KLKAVNFTI--EMNYEQIRFVEKYYMDH 105
DG++VPY+P ++V P R +L VN I + N + F+++Y D
Sbjct: 189 RDGEIVPYLPG---RKWVDGSVSDDLPAKRLARLYNVNHFIVSQTNPHVVPFLQEYSGD- 244
Query: 106 VDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALR 139
+ P + +L N ++DE ++ E R
Sbjct: 245 ITIIPPFSFSNP-LKLLSNPSEDELQRLILEGER 277
>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional.
Length = 401
Score = 29.4 bits (66), Expect = 2.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 79 RKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCV 113
RK A+NF + EQ++ +E++Y ++ P+ V
Sbjct: 363 RKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEV 397
>gnl|CDD|183243 PRK11628, PRK11628, transcriptional regulator BolA; Provisional.
Length = 105
Score = 27.4 bits (61), Expect = 3.2
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 196 LRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPA-----FDVLIVSNHFNNLTITQRTM 250
+R++I + F P L VVD H + PA F V++VS+ F R
Sbjct: 3 IREQIEEKLRAAFQPVFLEVVDESYRHNV----PAGSESHFKVVLVSDRFTGERFLNRHR 58
Query: 251 LMHDYLRDFINEGV 264
+++ L + ++ V
Sbjct: 59 MIYSTLAEELSTTV 72
Score = 27.1 bits (60), Expect = 5.2
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC--AIDIHADTPEEWN 162
K+ +VS F + RH M++ L +E+ + A+ +H T +EW
Sbjct: 40 KVVLVSDRFTGERFLNRHRMIYSTLAEEL----STTVHALALHTYTIKEWE 86
>gnl|CDD|177161 MTH00099, COX3, cytochrome c oxidase subunit III; Validated.
Length = 261
Score = 28.2 bits (63), Expect = 4.8
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 234 LIVSNHFNNLTI-----TQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLR 279
LI+ HFN+ T+ + M+ + RD I E F+ H T ++ LR
Sbjct: 31 LIMWFHFNSTTLLTLGLLTNMLTMYQWWRDIIREST-FQGHHTPIVQKGLR 80
>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function
prediction only].
Length = 218
Score = 27.8 bits (62), Expect = 5.6
Identities = 14/55 (25%), Positives = 20/55 (36%)
Query: 227 DNPAFDVLIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTMLMHDYLRDF 281
PAFD+L+ + F N T R + D L + + R L L
Sbjct: 139 SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPKKRLEFL 193
>gnl|CDD|232881 TIGR00221, nagA, N-acetylglucosamine-6-phosphate deacetylase.
[Central intermediary metabolism, Amino sugars].
Length = 380
Score = 28.3 bits (63), Expect = 5.6
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 9 ELLDEYQEPTGPDN--RPTFARLHIVARNFCGFDEAELTTLFKDQSTLPDGDLVPYIPTL 66
EL E +E P N P F +HI ++A TL LP ++PTL
Sbjct: 39 ELEPEIKEIDLPGNVLTPGFIDIHIHGCGGVDTNDASFETLEIMSERLPKSGCTSFLPTL 98
Query: 67 -----EELRYVLKKPIMRKLKA 83
E ++ +K MR+ A
Sbjct: 99 ITQPDENIKQAVK--NMREYLA 118
>gnl|CDD|234842 PRK00810, nifW, nitrogenase stabilizing/protective protein;
Provisional.
Length = 113
Score = 26.9 bits (60), Expect = 5.7
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 27 ARLHIVAR--------NFCGFDEAELTTLFKDQSTLPDGDLVPYIPTLEELRYVLKKPIM 78
ARLHI+ R +F G EAE + D V P + + VLK +
Sbjct: 37 ARLHILKRMGQYLAQEDFAGLPEAEARARCRAVLERAYADFVASSPLDQRVFKVLKDAVA 96
Query: 79 RKLKA 83
K +A
Sbjct: 97 PKKRA 101
>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 120
Score = 27.2 bits (61), Expect = 6.0
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 223 PIDNDN-------PAFDV--LIVSNHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTML 273
PI ++N FDV L +NNL +T L +DF EGV RT
Sbjct: 28 PIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRS-QDF--EGV-----RTCS 79
Query: 274 MHDYLRDFINEGVQFRLH 291
D LR + V+ R+H
Sbjct: 80 PDDCLRTIFDLIVKARVH 97
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 27.2 bits (61), Expect = 9.1
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 119 SRLFQNKTKDERHAMVHEALRDEMLKREA----GCAIDIHADTPEEWNDFRANNDFDEIS 174
SRLF ++H LR +L RE G I I P + D +E++
Sbjct: 149 SRLFYLA------GLIHPTLRTLLLPRELLNKRGKTIRIRVGRPIPPEELARFEDAEELA 202
>gnl|CDD|225852 COG3315, COG3315, O-Methyltransferase involved in polyketide
biosynthesis [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 297
Score = 27.3 bits (61), Expect = 9.4
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 216 VDSKKMHPIDNDNPAFDVLIVS---NHFNNLTITQRTMLMHDYLRDFINEGVQFRLHRTM 272
++S+K P+ +D F +V + F L + D+L RT
Sbjct: 27 LESRKPDPLIDD--PFAEELVRQGDDDFTKLADPALALGGGDFLERMNFLAA-----RTR 79
Query: 273 LMHDYLRDFINEGV 286
D++R ++ G+
Sbjct: 80 YFDDFVRAALDAGI 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.421
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,736,911
Number of extensions: 1544495
Number of successful extensions: 1371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1369
Number of HSP's successfully gapped: 30
Length of query: 293
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 197
Effective length of database: 6,679,618
Effective search space: 1315884746
Effective search space used: 1315884746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)