RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6791
(293 letters)
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 123
Score = 50.9 bits (122), Expect = 2e-08
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC-AIDIHADTPEEWN 162
++ +VS F+ + +RH +VHEAL +E+ A+ I A TP +W
Sbjct: 64 RVAVVSSRFEGMSPLQRHRLVHEALSEEL---AGPVHALAIQAKTPAQWR 110
Score = 44.4 bits (105), Expect = 4e-06
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 196 LRDKIYNYIAKHFSPTVLHVVDSKKMHPI-DNDNPAFDVLIVSNHFNNLTITQRTMLMHD 254
+ I + + SP VL + + H + F V +VS+ F ++ QR L+H+
Sbjct: 27 VEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHE 86
Query: 255 YLRDFINEGV 264
L + + V
Sbjct: 87 ALSEELAGPV 96
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene,
structural GEN NPPSFA; NMR {Escherichia coli str}
Length = 107
Score = 50.4 bits (121), Expect = 2e-08
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC-AIDIHADTPEEWND 163
K+ +VS F + RH M++ L +E+ A+ +H T +EW
Sbjct: 47 KVVLVSDRFTGERFLNRHRMIYSTLAEEL---STTVHALALHTYTIKEWEG 94
Score = 43.9 bits (104), Expect = 4e-06
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 196 LRDKIYNYIAKHFSPTVLHVVDSKKMHPI-DNDNPAFDVLIVSNHFNNLTITQRTMLMHD 254
+R++I + F P L VVD H + F V++VS+ F R +++
Sbjct: 10 IRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYS 69
Query: 255 YLRDFINEGV 264
L + ++ V
Sbjct: 70 TLAEELSTTV 79
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure,
ssgcid, seattle structural genomics center for
infectious disease; NMR {Plasmodium falciparum}
Length = 108
Score = 49.8 bits (119), Expect = 4e-08
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC-AIDIHADTPEEWNDFRA 166
IVS F++K +RH +V+ L++E+ A + TP E++ ++
Sbjct: 56 DAVIVSNNFEDKKLLDRHRLVNTILKEEL----QNIHAFSMKCHTPLEYDKLKS 105
Score = 37.1 bits (86), Expect = 0.001
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 196 LRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDY 255
++ I + ++ PT L +VD +FD +IVSN+F + + R L++
Sbjct: 25 IQKVIEDKLSSALKPTFLELVDKS-----CGCGTSFDAVIVSNNFEDKKLLDRHRLVNTI 79
Query: 256 LRDFINE 262
L++ +
Sbjct: 80 LKEELQN 86
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom
center for infectious disease, BOL like protein, unknown
FU; 1.95A {Babesia bovis}
Length = 105
Score = 47.5 bits (113), Expect = 2e-07
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEW 161
+IVS+ F+ K +R +V+ A+ EM + A + TP EW
Sbjct: 55 NAYIVSQQFEGKGLLDRQRLVNSAIAAEMPQIH---AFTMKCLTPGEW 99
Score = 36.3 bits (84), Expect = 0.002
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 197 RDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYL 256
+ + + SP L V D+ AF+ IVS F + R L++ +
Sbjct: 25 KSIVEERLRSMLSPQFLKVTDNS-----GGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAI 79
Query: 257 RDFINE 262
+ +
Sbjct: 80 AAEMPQ 85
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase
morphogene, stress-induced morphogene, structural
genomics; NMR {Mus musculus} SCOP: d.52.6.1
Length = 113
Score = 47.5 bits (113), Expect = 2e-07
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC-AIDIHADTPEEW 161
++ +VS F+ K +RH +V+E L +E+ A + TPE+W
Sbjct: 63 RVLVVSAKFEGKPLLQRHRLVNECLAEEL----PHIHAFEQKTLTPEQW 107
Score = 40.6 bits (95), Expect = 6e-05
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 198 DKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLR 257
D + + + + V D+ +F VL+VS F + QR L+++ L
Sbjct: 33 DYLREKLRQDLEAEHVEVEDTTLNR----CATSFRVLVVSAKFEGKPLLQRHRLVNECLA 88
Query: 258 DFINE 262
+ +
Sbjct: 89 EELPH 93
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A
{Coxiella burnetii}
Length = 82
Score = 45.8 bits (109), Expect = 6e-07
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC--AIDIHADTPEEW 161
+ ++ F+ +T RH +V+ AL M A+ + TP+E+
Sbjct: 34 EAVVLCPTFEGQTALTRHRLVYNALGSHM----QSDIHALSLKTYTPDEY 79
Score = 31.9 bits (73), Expect = 0.041
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 198 DKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLR 257
I +I S + + + D F+ +++ F T R L+++ L
Sbjct: 8 HDIKQWIETGLSESRVISAE--------GDGHHFEAVVLCPTFEGQTALTRHRLVYNALG 59
Query: 258 DFINEGV 264
+ +
Sbjct: 60 SHMQSDI 66
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG,
structural genomics, PSI, protein structure initiative;
NMR {Escherichia coli} SCOP: d.52.6.1
Length = 97
Score = 45.5 bits (108), Expect = 9e-07
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDF 170
++ V LF ++ ++ V+ L + + A+ I A TP EW R N F
Sbjct: 34 QVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIH-AVSIKAYTPAEWARDRKLNGF 89
Score = 30.1 bits (68), Expect = 0.27
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 198 DKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLR 257
++I + + S +HV D F V+ V F+ ++ ++ ++ L
Sbjct: 9 NEIQSVLMNALSLQEVHV---------SGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLM 59
Query: 258 DFINEG 263
++I +
Sbjct: 60 EYIADN 65
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 1e-05
Identities = 44/244 (18%), Positives = 78/244 (31%), Gaps = 60/244 (24%)
Query: 39 FDEAELTTLFKDQSTLPDGDLVPYIPTLE----ELRYVLKKPIMRKLKAVNFTIEMNYEQ 94
+ AE +F S P +P L ++ ++ KL
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKL------------- 411
Query: 95 IRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDI- 153
KY + V+ P + I S + K K E +H ++ D + + D+
Sbjct: 412 ----HKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 154 --------------H---ADTPEEWNDFRAN-NDFDEISGKPDLRLRAAKT---TPVSVK 192
H + PE FR DF + K +R T S+
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK----IRHDSTAWNASGSIL 521
Query: 193 DVKLRDKIY-NYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTML 251
+ + K Y YI + P +V++ +D + LI S + + + + L
Sbjct: 522 NTLQQLKFYKPYICDN-DPKYERLVNAI----LDFLPKIEENLICSKYTD---LLRIA-L 572
Query: 252 MHDY 255
M +
Sbjct: 573 MAED 576
Score = 42.5 bits (99), Expect = 1e-04
Identities = 29/252 (11%), Positives = 65/252 (25%), Gaps = 78/252 (30%)
Query: 38 GFDEAELTTLF-----KDQSTLPD-------------GDLV-PYIPTLEELRYVLKKPIM 78
E+ +L LP + + + T + ++V +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 79 RKLKAVNFTIEMNYEQIRFVE--KYYMD------HVDYWPLCVKLHIVSRLFQNKTKDER 130
IE + + E K + + ++S ++ + K +
Sbjct: 357 T-------IIESSLNVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLIWFDVIKSDV 404
Query: 131 HAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFDEISGKPDLRLRAAKTTPVS 190
+V++ + ++++ + P + L
Sbjct: 405 MVVVNKLHKYSLVEK---------------QPK-------ESTISIPSIYLELKVKLE-- 440
Query: 191 VKDVKLRDKI---YNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQ 247
+ L I YN DS + P D + + +H N+ +
Sbjct: 441 -NEYALHRSIVDHYNIPKTF---------DSDDLIPPYLDQYFYSHI--GHHLKNIEHPE 488
Query: 248 RTMLMHDYLRDF 259
R L DF
Sbjct: 489 RMTLFRMVFLDF 500
Score = 37.5 bits (86), Expect = 0.005
Identities = 40/322 (12%), Positives = 96/322 (29%), Gaps = 101/322 (31%)
Query: 1 MD-----EDHSHNELLDEYQEPTGPDNRPTFARLHIVARNFCGFDEAELTTLFKDQSTLP 55
MD + + ++L F FD ++ + K +
Sbjct: 7 MDFETGEHQYQYKDIL--------SVFEDAFVD---------NFDCKDVQDMPKSILSKE 49
Query: 56 DGDLVPYIPTLEELRYVLKKPIMRK-----LKAVNFTIEMNY----EQIR-------FVE 99
+ D + L ++ K K V + +NY I+ +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 100 KYYMDHVDYWPLCVKLHIVSRLFQ--NKTKDERHAMVHEALRDEMLKRE--------AGC 149
+ Y++ D +L+ +++F N ++ + + + +AL + L+ G
Sbjct: 110 RMYIEQRD------RLYNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKNVLIDGVLGS 161
Query: 150 -----AIDIHADTPEE--------WNDFRANNDFDE-----------ISGKPDLRLRAAK 185
A+D+ + W + + N + I R +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 186 TTPVSVKDVKLRDKIYNYIAKHFSPTVLHVVD---SKKMHPIDNDNPAFD----VLI--- 235
+ + ++ + + L V+ + K + AF+ +L+
Sbjct: 222 NIKLRIHSIQAELR--RLLKSKPYENCLLVLLNVQNAKA--WN----AFNLSCKILLTTR 273
Query: 236 ---VSNHFNNLTITQRTMLMHD 254
V++ + T T ++ H
Sbjct: 274 FKQVTDFLSAATTTHISLDHHS 295
Score = 36.0 bits (82), Expect = 0.013
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 36/150 (24%)
Query: 156 DTPEEWNDFRANNDFDEISGKPD-----------LRLRAAKTTPVSVKDVKLRDKIYNYI 204
D + + + D I D L + + V++V + Y ++
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN--YKFL 94
Query: 205 AKHFS-----PTVLHVVDSKKMHPIDNDNPAFDVLIVS--NHFNNLTITQRTMLMHDYLR 257
P+++ + ++ + NDN F VS + L R L+ LR
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL----RQALLE--LR 148
Query: 258 DFINEGVQFRLH------RTMLMHDYLRDF 281
+ V + +T + D +
Sbjct: 149 P--AKNVL--IDGVLGSGKTWVALDVCLSY 174
Score = 34.4 bits (78), Expect = 0.040
Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 27/146 (18%)
Query: 7 HNELLDEYQEPTGPDNRPTFARLHI-------VARNFCGFDEAELTTLFKDQSTLPDGDL 59
H ++D Y P D+ ++ + + + E TLF+
Sbjct: 446 HRSIVDHYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-------- 496
Query: 60 VPYIPTLEELRYVLKKPIMRKLKAVNFTIEMN--YEQIRFVEKYYMDHVDYWPLCVK--L 115
++ + R++ +K I A N + + +Q++F + Y D+ + V L
Sbjct: 497 --FL----DFRFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 116 HIVSRLFQNKTKDERHAMVHEALRDE 141
+ ++ +N + ++ AL E
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAE 575
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN
integrated structural and functional genomic project,
unknown function; NMR {Synthetic}
Length = 80
Score = 40.4 bits (95), Expect = 4e-05
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGC--AIDIHADTPEE 160
+ +VS F K RH MV+ L + M G A+ + TP+E
Sbjct: 35 EATVVSPAFVGKAPLARHRMVYATLGELM----GGAIHALQLKTLTPDE 79
Score = 30.8 bits (70), Expect = 0.081
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 198 DKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLR 257
+ I I + V +H F+ +VS F R +++ L
Sbjct: 9 ETIRKLIESGLPEARVDVQGEDGVH--------FEATVVSPAFVGKAPLARHRMVYATLG 60
Query: 258 DFINEGV 264
+ + +
Sbjct: 61 ELMGGAI 67
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic
ehrlichiosis, STRE response, structural genomics; NMR
{Ehrlichia chaffeensis}
Length = 76
Score = 34.6 bits (80), Expect = 0.004
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEML 143
+ ++S FQ K+K E+H M+++ L +
Sbjct: 37 SIKVISSQFQGKSKLEQHRMIYKVLDGLNI 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.023
Identities = 47/284 (16%), Positives = 83/284 (29%), Gaps = 114/284 (40%)
Query: 2 DEDHSHNELLDEYQEPTGPDNRPTFARLHIVAR-----NFCGFDEAELTTLFKD--QSTL 54
DE + EL+ ++ L V+ FD+ L + L
Sbjct: 52 DEPTTPAELVGKF--------------LGYVSSLVEPSKVGQFDQV-LNLCLTEFENCYL 96
Query: 55 PDGD---LVPYIPTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPL 111
D L + + V K +++ NY R + K P
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIK-----------NYITARIMAKR--------PF 137
Query: 112 CVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHAD-----TPEEWNDFRA 166
K S LF R G A + A +++
Sbjct: 138 -DKKS-NSALF-------RAV-------------GEGNA-QLVAIFGGQGNTDDY----- 169
Query: 167 NNDFDEISGKPDLRLRAA-KTTPVSVKDVKLRDKIYNYIAKHFSPTVLHVVDSKKMHP-- 223
F+E LR +T V V D + + A+ S + +D++K+
Sbjct: 170 ---FEE--------LRDLYQTYHVLVGD------LIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 224 ID--------NDNPAFDVLI---VSNHFNNLTITQRTMLMHDYL 256
++ ++ P D L+ +S + + Q L H Y+
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPIS--CPLIGVIQ---LAH-YV 250
Score = 28.1 bits (62), Expect = 4.6
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 57 GDLVPYIPTLEELRYVLKKPIMRKLKAVNFTIEMNYEQIR 96
GDL L+ + VL ++K+ + ++ E++
Sbjct: 1857 GDLR----ALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.19
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 25/51 (49%)
Query: 43 ELTTLFKDQSTL----PDGDLVPYIPTLEELRYVLKKPIMRKLKAVNFTIE 89
E L K Q++L D P L A+ T+E
Sbjct: 18 EKQALKKLQASLKLYADDS-----APAL----------------AIKATME 47
Score = 27.6 bits (60), Expect = 3.2
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 7/28 (25%)
Query: 3 EDHSHNEL---LDEYQEPTGPDNRPTFA 27
E + +L L Y D+ P A
Sbjct: 18 EKQALKKLQASLKLY----ADDSAPALA 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit
DNA-dependent RNA polymerase in mitochondria,
transferase; 2.50A {Homo sapiens}
Length = 1134
Score = 29.8 bits (65), Expect = 1.4
Identities = 35/216 (16%), Positives = 58/216 (26%), Gaps = 13/216 (6%)
Query: 70 RYVLKKPIMRKLKAVNFTIEMNYEQIRFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDE 129
R V+K+ +M + V + R E W L +
Sbjct: 891 RKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFSG 950
Query: 130 RHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFDEISGKPDLRLRAAKTTPV 189
A+ H E + + + TP + S + T
Sbjct: 951 TRAIQH--WLTESARLISHMGSVVEWVTP---LGVPVIQPYRLDSKVKQIGGGIQSITYT 1005
Query: 190 SVKDVKLRDKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRT 249
D+ R F P +H +DS M + VS H T
Sbjct: 1006 HNGDIS-RKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADV 1064
Query: 250 MLMHDYLRD-FINEGVQFRLHRTMLMHDYLRDFINE 284
+M+ R+ F+ LH ++ D R +
Sbjct: 1065 SVMNQVCREQFVR------LHSEPILQDLSRFLVKR 1094
>2rff_A Putative nucleotidyltransferase; NP_343093.1,
nucleotidyltransferase domain, structural genomics; HET:
MSE; 1.40A {Sulfolobus solfataricus P2}
Length = 111
Score = 28.1 bits (62), Expect = 1.4
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 9/60 (15%)
Query: 113 VKLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDFDE 172
+ + V + + +R MV +R +D E + + F +
Sbjct: 53 IDILFVFKGIKEMNVFDRMYMVSRFIRGN---------VDYIVLDEGEKDRVKDKVLFWK 103
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine,
trap-transporter, periplasmic binding protein,
transport; HET: 4CS; 1.55A {Halomonas elongata} PDB:
2vpo_A* 3gyy_A
Length = 316
Score = 27.6 bits (62), Expect = 4.9
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 26/93 (27%)
Query: 92 YEQIRFVEKYYM--DHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALR---------- 139
YE V H ++ + + ++ F +E +V +A
Sbjct: 195 YE----VSPNLTFTSHG-WFTTAM---MANQDFYEGLSEEDQQLVQDAADAAYDHTIEHI 246
Query: 140 ----DEMLK--REAGCAIDIHADTPEEWNDFRA 166
+E L+ + A + + E+ F+
Sbjct: 247 KGLSEESLEKIKAASDEVTVTRLNDEQIQAFKE 279
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 27.3 bits (60), Expect = 6.2
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 126 TKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEW 161
ER AM+ L ++LKR + + W
Sbjct: 55 RSPERMAMIEACLSPQILKRVHFLTVRDWLYSDNLW 90
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD,
glucose metabolism, oxidoreductase (CHOH(D) - NAD(P));
2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5
PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A*
1h9b_A 2dpg_A*
Length = 485
Score = 27.5 bits (62), Expect = 6.3
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 10/61 (16%)
Query: 130 RHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRAN-----NDFDEISGKPDLRLRAA 184
R A+ + + + I D + F + +D + + L+
Sbjct: 46 RQALNDDEFKQLVRD-----CIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIE 100
Query: 185 K 185
+
Sbjct: 101 E 101
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium
smegmatis} PDB: 2we7_A
Length = 386
Score = 27.1 bits (60), Expect = 6.9
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 10/39 (25%)
Query: 130 RHAMVHEALRDEMLKRE--------AGCAIDIHADTPEE 160
H LR+ L E G +D+ TPEE
Sbjct: 309 THEDRLARLREAGLTEEELARLSSPIG--LDLGGRTPEE 345
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.3 bits (52), Expect = 7.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 116 HIVSRLFQNKTKDERHAMVH 135
HI R F+N+ +RH +VH
Sbjct: 13 HICERKFKNELDRDRHMLVH 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.421
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,864,238
Number of extensions: 302768
Number of successful extensions: 890
Number of sequences better than 10.0: 1
Number of HSP's gapped: 868
Number of HSP's successfully gapped: 42
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)