RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6791
         (293 letters)



>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli
           [TaxId: 562]}
          Length = 97

 Score = 47.9 bits (114), Expect = 4e-08
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEWNDFRANNDF 170
           ++  V  LF   ++ ++   V+  L + +       A+ I A TP EW   R  N F
Sbjct: 34  QVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIH-AVSIKAYTPAEWARDRKLNGF 89



 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 198 DKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLR 257
           ++I + +    S   +HV           D   F V+ V   F+ ++  ++   ++  L 
Sbjct: 9   NEIQSVLMNALSLQEVHV---------SGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLM 59

Query: 258 DFINEG 263
           ++I + 
Sbjct: 60  EYIADN 65


>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 113

 Score = 42.2 bits (99), Expect = 6e-06
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 114 KLHIVSRLFQNKTKDERHAMVHEALRDEMLKREAGCAIDIHADTPEEW 161
           ++ +VS  F+ K   +RH +V+E L +E+       A +    TPE+W
Sbjct: 63  RVLVVSAKFEGKPLLQRHRLVNECLAEELPHIH---AFEQKTLTPEQW 107



 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 198 DKIYNYIAKHFSPTVLHVVDSKKMHPIDNDNPAFDVLIVSNHFNNLTITQRTMLMHDYLR 257
           D +   + +      + V D+           +F VL+VS  F    + QR  L+++ L 
Sbjct: 33  DYLREKLRQDLEAEHVEVEDTTLNR----CATSFRVLVVSAKFEGKPLLQRHRLVNECLA 88

Query: 258 DFINE 262
           + +  
Sbjct: 89  EELPH 93


>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B, GatB, C-terminal domain
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 107

 Score = 24.3 bits (52), Expect = 9.8
 Identities = 9/83 (10%), Positives = 22/83 (26%), Gaps = 2/83 (2%)

Query: 96  RFVEKYYMDHVDYWPLCVKLHIVSRLFQNKTKDERHAMVHEALRDEMLKR--EAGCAIDI 153
           ++V +  +   D   L +   +               +    L   + +   +    +  
Sbjct: 9   KYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLD 68

Query: 154 HADTPEEWNDFRANNDFDEISGK 176
              TPE         +   +S K
Sbjct: 69  TKLTPENLAGMIKLIEDGTMSSK 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0533    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,197,182
Number of extensions: 59207
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 20
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)