BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6793
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 121/252 (48%), Gaps = 24/252 (9%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARN 173
+F+ SR+T ++HGF D ++S + + L+ + N +VDWS AK Y A +N
Sbjct: 65 NFQSSRKTHFVIHGFRDRGEDSWPSDMCKKI-LQVETTNCISVDWSSGAKAE-YTQAVQN 122
Query: 174 TMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQ 233
VG TA I L+ + +VH++G SLGAH G AG+ ++ R + VTGLDPA+
Sbjct: 123 IRIVGAETAYLIQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRLEGR-VGRVTGLDPAE 181
Query: 234 VLFTKSGPDERLDASHAEWVDVVHTXXXXXX------XXXXXXHRDFYPNGGDWPQPGCT 287
F + + RLD S A++VDV+HT H DF+PNGG PGC
Sbjct: 182 PCFQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGK-QMPGCK 240
Query: 288 WDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHXXXXXXXXEAIRNHGKGFTAVS 347
FS+ F G W DY A C+H +I N GF A
Sbjct: 241 ---RSSFST------FIDINGIWQG---AQDYLA-CNHLKSFEYYSSSILNP-DGFLAYP 286
Query: 348 CPSYEYFEKGEC 359
C SY+ F++ C
Sbjct: 287 CDSYDKFQENGC 298
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 10 LEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGFS 69
L+ + N +VDWS AK Y A +N VG TA I L+ + +VH++G S
Sbjct: 96 LQVETTNCISVDWSSGAKAE-YTQAVQNIRIVGAETAYLIQQLLTELSYNPENVHIIGHS 154
Query: 70 LGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAECK 109
LGAH G AG+ ++ R + VTG +P +P + + E +
Sbjct: 155 LGAHTAGEAGRRLEGR-VGRVTGL-DPAEPCFQDASEEVR 192
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 125/276 (45%), Gaps = 33/276 (11%)
Query: 94 KNPKDPEVRSMTAECKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNI 153
+NP + ++ ++ +F+ R+T+ ++HGF D DES + + + + E ++ N
Sbjct: 70 ENPNNFQILLLSDPSTIEASNFQMDRKTRFIIHGFIDKGDESWVTDMCKKLF-EVEEVNC 128
Query: 154 FTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGM 213
VDW ++ Y AA N VG A+ +D L+ VHL+G SLGAHV G
Sbjct: 129 ICVDWKKGSQAT-YTQAANNVRVVGAQVAQMLDILLTEYSYPPSKVHLIGHSLGAHVAGE 187
Query: 214 AGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTXXXXXX------XXX 267
AG K+ + +TGLDP + F + + RLD S A++VDV+HT
Sbjct: 188 AGS--KTPGLSRITGLDPVEASFESTPEEVRLDPSDADFVDVIHTDAAPLIPFLGFGTNQ 245
Query: 268 XXXHRDFYPNGGDWPQPGCTWDYADRFSSS----LGHRDFYPNGGDWPQPGCTWDYAAVC 323
H DF+PNGG+ PGC + + G RDF C
Sbjct: 246 QMGHLDFFPNGGE-SMPGCKKNALSQIVDLDGIWAGTRDF-----------------VAC 287
Query: 324 SHXXXXXXXXEAIRNHGKGFTAVSCPSYEYFEKGEC 359
+H E+I N GF A C SY+ FE +C
Sbjct: 288 NHLRSYKYYLESILNP-DGFAAYPCTSYKSFESDKC 322
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 10 LEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGFS 69
E ++ N VDW ++ Y AA N VG A+ +D L+ VHL+G S
Sbjct: 121 FEVEEVNCICVDWKKGSQAT-YTQAANNVRVVGAQVAQMLDILLTEYSYPPSKVHLIGHS 179
Query: 70 LGAHVVGMAGKHVKSRQIRHVTG 92
LGAHV G AG K+ + +TG
Sbjct: 180 LGAHVAGEAGS--KTPGLSRITG 200
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 123/272 (45%), Gaps = 24/272 (8%)
Query: 94 KNPKDPEVRSMTAECKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNI 153
+NP + + S T F +F+ R+T+ +VHGF D ++ + + + + + + N
Sbjct: 45 ENPNNYQKISATEPDTIKFSNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKMF-QVEKVNC 103
Query: 154 FTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGM 213
VDW ++ Y A+ NT VG A + L G +VHL+G SLGAHVVG
Sbjct: 104 ICVDWRRGSRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGE 162
Query: 214 AGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTXXXXXX------XXX 267
AG+ ++ + +TGLDPA+ F + RLD S A +VDV+HT
Sbjct: 163 AGRRLEG-HVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQ 221
Query: 268 XXXHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHXX 327
H DF+PNGG PGC + G W T ++ A C+H
Sbjct: 222 KVGHLDFFPNGGK-EMPGCQKNILSTIVDI---------NGIWEG---TQNFVA-CNHLR 267
Query: 328 XXXXXXEAIRNHGKGFTAVSCPSYEYFEKGEC 359
+I N GF C SYE F++ +C
Sbjct: 268 SYKYYASSILNP-DGFLGYPCSSYEKFQQNDC 298
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 10 LEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGFS 69
+ + N VDW ++ Y A+ NT VG A + L G +VHL+G S
Sbjct: 96 FQVEKVNCICVDWRRGSRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHS 154
Query: 70 LGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAECK 109
LGAHVVG AG+ ++ + +TG +P +P + + E +
Sbjct: 155 LGAHVVGEAGRRLEG-HVGRITGL-DPAEPCFQGLPEEVR 192
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 139/305 (45%), Gaps = 51/305 (16%)
Query: 73 HVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAECKPVF-KHFKPSRRTKILVHGFGDN 131
H++ + K V +R + + +NP + + + A+ + +FK +R+T+ ++HGF D
Sbjct: 26 HILPWSPKDVNTRFLLYT--NENPNN--FQEVAADSSSISGSNFKTNRKTRFIIHGFIDK 81
Query: 132 SDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDS 191
+E+ + + ++ + + + N VDW ++ Y A++N VG A F++ L +
Sbjct: 82 GEENWLANVCKNLF-KVESVNCICVDWKGGSRT-GYTQASQNIRIVGAEVAYFVEFLQSA 139
Query: 192 TGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAE 251
G +VH++G SLGAH G AG+ I +TGLDPA+ F + RLD S A+
Sbjct: 140 FGYSPSNVHVIGHSLGAHAAGEAGRRTNG-TIGRITGLDPAEPCFQGTPELVRLDPSDAK 198
Query: 252 WVDVVHTXXXXXXXXXXXXHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWP 311
+VDV+HT PN G S +GH DF+PNGG
Sbjct: 199 FVDVIHTDGAP-----------IVPNLG------------FGMSQVVGHLDFFPNGG-VE 234
Query: 312 QPGC-----------------TWDYAAVCSHXXXXXXXXEAIRNHGKGFTAVSCPSYEYF 354
PGC T D+AA C+H ++I N GF C SY F
Sbjct: 235 MPGCKKNILSQIVDIDGIWEGTRDFAA-CNHLRSYKYYTDSIVNP-DGFAGFPCASYNVF 292
Query: 355 EKGEC 359
+C
Sbjct: 293 TANKC 297
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 10 LEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGFS 69
+ + N VDW ++ Y A++N VG A F++ L + G +VH++G S
Sbjct: 95 FKVESVNCICVDWKGGSRT-GYTQASQNIRIVGAEVAYFVEFLQSAFGYSPSNVHVIGHS 153
Query: 70 LGAHVVGMAGKHVKSRQIRHVTGRKNPKDP 99
LGAH G AG+ I +TG +P +P
Sbjct: 154 LGAHAAGEAGRRTNG-TIGRITGL-DPAEP 181
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 118/246 (47%), Gaps = 30/246 (12%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARN 173
+F +R+T+ ++HGF D+ + S + + ++ + + + N VDW +K Y+ A++N
Sbjct: 65 NFNLNRKTRFIIHGFTDSGENSWLSDMCKNMF-QVEKVNCICVDWKGGSKA-QYSQASQN 122
Query: 174 TMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQ 233
VG A + L S +VH++G SLGAH G AGK + + +TGLDPA+
Sbjct: 123 IRVVGAEVAYLVQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGL-VGRITGLDPAE 181
Query: 234 VLFTKSGPDERLDASHAEWVDVVHTXXXXXXXXXXXXHRDFYPNGGDWPQPGCTWDYADR 293
F + + RLD S A++VDV+HT D P P G
Sbjct: 182 PYFQDTPEEVRLDPSDAKFVDVIHT--------------DISP---ILPSLGFG------ 218
Query: 294 FSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHXXXXXXXXEAIRNHGKGFTAVSCPSYEY 353
S +GH DF+PNGG PGC + C+H +I N +GF C SY+
Sbjct: 219 MSQKVGHMDFFPNGGK-DMPGCKTGIS--CNHHRSIEYYHSSILNP-EGFLGYPCASYDE 274
Query: 354 FEKGEC 359
F++ C
Sbjct: 275 FQESGC 280
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 10 LEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGFS 69
+ + N VDW +K Y+ A++N VG A + L S +VH++G S
Sbjct: 96 FQVEKVNCICVDWKGGSKA-QYSQASQNIRVVGAEVAYLVQVLSTSLNYAPENVHIIGHS 154
Query: 70 LGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAECK 109
LGAH G AGK + + +TG +P +P + E +
Sbjct: 155 LGAHTAGEAGKRLNGL-VGRITGL-DPAEPYFQDTPEEVR 192
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 120/273 (43%), Gaps = 46/273 (16%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARN 173
+F R+T+ ++HGF D +ES + + ++ + + + N VDW ++ Y+ A++N
Sbjct: 64 NFNTGRKTRFIIHGFIDKGEESWLSTMCQNMF-KVESVNCICVDWKSGSRTA-YSQASQN 121
Query: 174 TMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQ 233
VG A + L S +VH++G SLG+H G AG+ + +TGLDPA+
Sbjct: 122 VRIVGAEVAYLVGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNG-AVGRITGLDPAE 180
Query: 234 VLFTKSGPDERLDASHAEWVDVVHTXXXXXXXXXXXXHRDFYPNGGDWPQPGCTWDYADR 293
F + RLD S A++VDV+HT F PN G
Sbjct: 181 PCFQGTPELVRLDPSDAQFVDVIHTDIAP-----------FIPNLG------------FG 217
Query: 294 FSSSLGHRDFYPNGGDWPQPGC-----------------TWDYAAVCSHXXXXXXXXEAI 336
S + GH DF+PNGG PGC T D+AA C+H ++I
Sbjct: 218 MSQTAGHLDFFPNGGK-EMPGCQKNVLSQIVDIDGIWQGTRDFAA-CNHLRSYKYYTDSI 275
Query: 337 RNHGKGFTAVSCPSYEYFEKGECKAMDNSTLPM 369
N GF SC SY F +C + P
Sbjct: 276 LNP-DGFAGFSCASYSDFTANKCFPCSSEGCPQ 307
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 13 DDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGFSLGA 72
+ N VDW ++ Y+ A++N VG A + L S +VH++G SLG+
Sbjct: 98 ESVNCICVDWKSGSRTA-YSQASQNVRIVGAEVAYLVGVLQSSFDYSPSNVHIIGHSLGS 156
Query: 73 HVVGMAGKHVKSRQIRHVTGRKNPKDP 99
H G AG R+ GR DP
Sbjct: 157 HAAGEAG-----RRTNGAVGRITGLDP 178
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 118/263 (44%), Gaps = 46/263 (17%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARN 173
+F+ R+T+ ++HGF D +E + + ++ + + + N VDW ++ Y A++N
Sbjct: 64 NFRMDRKTRFIIHGFIDKGEEDWLSNICKNLF-KVESVNCICVDWKGGSRT-GYTQASQN 121
Query: 174 TMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQ 233
VG A F++ L S G +VH++G SLG+H G AG+ I +TGLDPA+
Sbjct: 122 IRIVGAEVAYFVEVLKSSLGYSPSNVHVIGHSLGSHAAGEAGRRTNG-TIERITGLDPAE 180
Query: 234 VLFTKSGPDERLDASHAEWVDVVHTXXXXXXXXXXXXHRDFYPNGGDWPQPGCTWDYADR 293
F + RLD S A++VDV+HT PN G
Sbjct: 181 PCFQGTPELVRLDPSDAKFVDVIHTDAAP-----------IIPNLGFG------------ 217
Query: 294 FSSSLGHRDFYPNGGDWPQPGC-----------------TWDYAAVCSHXXXXXXXXEAI 336
S ++GH DF+PNGG PGC T D+ A C+H ++I
Sbjct: 218 MSQTVGHLDFFPNGGK-QMPGCQKNILSQIVDIDGIWEGTRDFVA-CNHLRSYKYYADSI 275
Query: 337 RNHGKGFTAVSCPSYEYFEKGEC 359
N GF C SY F +C
Sbjct: 276 LNP-DGFAGFPCDSYNVFTANKC 297
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 13 DDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGFSLGA 72
+ N VDW ++ Y A++N VG A F++ L S G +VH++G SLG+
Sbjct: 98 ESVNCICVDWKGGSRT-GYTQASQNIRIVGAEVAYFVEVLKSSLGYSPSNVHVIGHSLGS 156
Query: 73 HVVGMAGKHVKSRQIRHVTGRKNPKDP 99
H G AG+ I +TG +P +P
Sbjct: 157 HAAGEAGRRTNG-TIERITGL-DPAEP 181
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 119/252 (47%), Gaps = 25/252 (9%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARN 173
+F+ ++T+ ++HGF D +E+ + + ++ + + ++ N VDW ++ Y AA N
Sbjct: 65 NFQTDKKTRFIIHGFIDKGEENWLLDMCKNMF-KVEEVNCICVDWKKGSQTS-YTQAANN 122
Query: 174 TMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQ 233
VG A+ + L + V L+G SLGAHV G AG ++ + +TGLDP +
Sbjct: 123 VRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGS--RTPGLGRITGLDPVE 180
Query: 234 VLFTKSGPDERLDASHAEWVDVVHTXXXXXX------XXXXXXHRDFYPNGGDWPQPGCT 287
F + + RLD + A++VDV+HT H DF+PNGG+ PGC
Sbjct: 181 ASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGE-EMPGCK 239
Query: 288 WDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHXXXXXXXXEAIRNHGKGFTAVS 347
+ S + D G W T D+ A C+H E+I N GF +
Sbjct: 240 KNAL----SQIVDLD-----GIWEG---TRDFVA-CNHLRSYKYYSESILNP-DGFASYP 285
Query: 348 CPSYEYFEKGEC 359
C SY FE +C
Sbjct: 286 CASYRAFESNKC 297
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 13 DDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGFSLGA 72
++ N VDW ++ Y AA N VG A+ + L + V L+G SLGA
Sbjct: 99 EEVNCICVDWKKGSQTS-YTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGA 157
Query: 73 HVVGMAG 79
HV G AG
Sbjct: 158 HVAGEAG 164
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 118/272 (43%), Gaps = 24/272 (8%)
Query: 94 KNPKDPEVRSMTAECKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNI 153
+NP + ++ + T +F+ R+T+ ++HGF D +++S + + + E + N
Sbjct: 47 ENPNNFQLITGTEPDTIEASNFQLDRKTRFIIHGFLDKAEDSWPSDMCKKMF-EVEKVNC 105
Query: 154 FTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGM 213
VDW ++ Y A +N VG TA I L G DVH++G SLGAH
Sbjct: 106 ICVDWRHGSRA-MYTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVHVIGHSLGAHTAAE 164
Query: 214 AGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTXXXXXX------XXX 267
A ++ +TGLDPA F + RLD S A +VDV+HT
Sbjct: 165 A-GRRLGGRVGRITGLDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQ 223
Query: 268 XXXHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHXX 327
H DF+PNGG PGC + S++ D G W G C+H
Sbjct: 224 KVGHLDFFPNGGK-EMPGCKKNVL----STITDID-----GIWEGIG----GFVSCNHLR 269
Query: 328 XXXXXXEAIRNHGKGFTAVSCPSYEYFEKGEC 359
++ N GF C SY+ F++ +C
Sbjct: 270 SFEYYSSSVLNP-DGFLGYPCASYDEFQESKC 300
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 10 LEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGFS 69
E + N VDW ++ Y A +N VG TA I L G DVH++G S
Sbjct: 98 FEVEKVNCICVDWRHGSRA-MYTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVHVIGHS 156
Query: 70 LGAHVVGMA 78
LGAH A
Sbjct: 157 LGAHTAAEA 165
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 118/272 (43%), Gaps = 24/272 (8%)
Query: 94 KNPKDPEVRSMTAECKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNI 153
+NP + ++ + T +F+ R+T+ ++HGF D +++S + + + E + N
Sbjct: 45 ENPNNFQLITGTEPDTIEASNFQLDRKTRFIIHGFLDKAEDSWPSDMCKKMF-EVEKVNC 103
Query: 154 FTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGM 213
VDW ++ Y A +N VG TA I L G DVH++G SLGAH
Sbjct: 104 ICVDWRHGSRA-MYTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVHVIGHSLGAHTAAE 162
Query: 214 AGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTXXXXXX------XXX 267
A ++ +TGLDPA F + RLD S A +VDV+HT
Sbjct: 163 A-GRRLGGRVGRITGLDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQ 221
Query: 268 XXXHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHXX 327
H DF+PNGG PGC + S++ D G W G C+H
Sbjct: 222 KVGHLDFFPNGGK-EMPGCKKNVL----STITDID-----GIWEGIG----GFVSCNHLR 267
Query: 328 XXXXXXEAIRNHGKGFTAVSCPSYEYFEKGEC 359
++ N GF C SY+ F++ +C
Sbjct: 268 SFEYYSSSVLNP-DGFLGYPCASYDEFQESKC 298
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 10 LEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGFS 69
E + N VDW ++ Y A +N VG TA I L G DVH++G S
Sbjct: 96 FEVEKVNCICVDWRHGSRA-MYTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVHVIGHS 154
Query: 70 LGAHVVGMA 78
LGAH A
Sbjct: 155 LGAHTAAEA 163
>pdb|1WLH|A Chain A, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
pdb|1WLH|B Chain B, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
Length = 311
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 49 IDHLIDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMT 105
+D + + G LVG + V + GKH++ + V G K+PEV+S T
Sbjct: 249 LDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGSPFKQVLGNPGKKNPEVKSFT 305
>pdb|3SK9|A Chain A, Crystal Structure Of The Thermus Thermophilus Cas3 Hd
Domain
pdb|3SKD|A Chain A, Crystal Structure Of The Thermus Thermophilus Cas3 Hd
Domain In The Presence Of Ni2+
Length = 265
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDP 231
G+ T F+ L+ G R + + +LGAH A KSR RH+ DP
Sbjct: 111 GVFTELFLRRLLKEKGLPERAANDLAAALGAHHGFPANAEEKSRARRHLRTEDP 164
>pdb|1QFH|A Chain A, Dimerization Of Gelation Factor From Dictyostelium
Discoideum: Crystal Structure Of Rod Domains 5 And 6
pdb|1QFH|B Chain B, Dimerization Of Gelation Factor From Dictyostelium
Discoideum: Crystal Structure Of Rod Domains 5 And 6
Length = 212
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 49 IDHLIDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMT 105
+D + + G LVG + V + GKH++ + V G K+PEV+S T
Sbjct: 150 LDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGSPFKQVLGNPGKKNPEVKSFT 206
>pdb|3IX1|A Chain A, Periplasmic
N-Formyl-4-Amino-5-Aminomethyl-2-Methylpyrimidine
Binding Protein From Bacillus Halodurans
pdb|3IX1|B Chain B, Periplasmic
N-Formyl-4-Amino-5-Aminomethyl-2-Methylpyrimidine
Binding Protein From Bacillus Halodurans
Length = 302
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 52 LIDSTGADARDVHL--VGFSLGAHVVGMAGKHVKSRQIRH 89
++++ G D VHL VGF LGA +V V I H
Sbjct: 124 MVEAAGGDYEQVHLMDVGFELGASIVSGRADAVVGTYINH 163
>pdb|2NU0|I Chain I, Molecular Structures Of The Complexes Of Sgpb With Omtky3
Aromatic P1 Variants Trp18i, His18i, Phe18i, And Tyr18i
Length = 51
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 309 DWPQPGCTWDYAAVC 323
++P+P CTW+Y +C
Sbjct: 5 EYPKPACTWEYRPLC 19
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,235,156
Number of Sequences: 62578
Number of extensions: 524769
Number of successful extensions: 1040
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 29
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)