RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6793
(376 letters)
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 261 bits (668), Expect = 9e-86
Identities = 108/259 (41%), Positives = 146/259 (56%), Gaps = 30/259 (11%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARN 173
+F PSR T+ ++HG+ + +ES LR AYL + DYN+ VDW A P Y A N
Sbjct: 31 NFNPSRPTRFIIHGWTSSGEES-WISDLRKAYLSRGDYNVIVVDWGRGA-NPNYPQAVNN 88
Query: 174 TMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQ 233
T VG A+F+D L+D+TG +VHL+G SLGAHV G AGK + ++ +TGLDPA
Sbjct: 89 TRVVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLN-GKLGRITGLDPAG 147
Query: 234 VLFTKSGPDERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFYPNGGDWPQPGCTWDYADR 293
LF+ + P++RLD S A++VDV+HT GG LGFS +GH DFYPNGG QPGC D
Sbjct: 148 PLFSGADPEDRLDPSDAQFVDVIHTDGGLLGFSQPIGHADFYPNGGR-DQPGCPKDILSS 206
Query: 294 FSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHRRAYYYYAEAIRNHGKGFTAVSCPSYEY 353
+ CSH+RA +Y+AE+I + GF A C SY+
Sbjct: 207 DFVA-------------------------CSHQRAVHYFAESILSP-CGFVAYPCSSYDE 240
Query: 354 FEKGECKAMDNSTLPMGLN 372
F G+C + + MG +
Sbjct: 241 FLAGKCFPCGSGCVRMGYH 259
Score = 105 bits (263), Expect = 6e-26
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 8 AYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVG 67
AYL + DYN+ VDW A P Y A NT VG A+F+D L+D+TG +VHL+G
Sbjct: 60 AYLSRGDYNVIVVDWGRGA-NPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLENVHLIG 118
Query: 68 FSLGAHVVGMAGKHVKSRQIRHVTG 92
SLGAHV G AGK + ++ +TG
Sbjct: 119 HSLGAHVAGFAGKRLN-GKLGRITG 142
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 161 bits (410), Expect = 9e-47
Identities = 78/255 (30%), Positives = 114/255 (44%), Gaps = 39/255 (15%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARN 173
+F S++T+ ++HGF D E + + + N+ VDW + +Y A N
Sbjct: 66 NFNTSKKTRAIIHGFTDKGQEESWLSDMCKNLFQVEGVNVIVVDWGSGST-TFYRQATLN 124
Query: 174 TMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVK-SRQIRHVTGLDPA 232
VG A+ + L + +VHL+G SLGAHV G AG+ K ++ +TGLDPA
Sbjct: 125 VRVVGAEVAKLLVELEEELNVSPENVHLIGHSLGAHVAGEAGRRTKGKTKLGRITGLDPA 184
Query: 233 QVLFTKSGPDERLDASHAEWVDVVHTSGG---YLGFSSSLGHRDFYPNGGDWPQPGCTWD 289
F + RLD A++VD +HT LG +S Q
Sbjct: 185 GPYFKGTPELTRLDPGDADFVDAIHTDTRPIPGLGMGTS--------------QR----- 225
Query: 290 YADRFSSSLGHRDFYPNGGDWPQPGC-----TWDYAAVCSHRRAYYYYAEAIRNHGKGFT 344
+GH DF+PNGG QPGC C+H R+ Y+AE++ N + F
Sbjct: 226 --------VGHVDFFPNGGSE-QPGCQNNVLEGTQFVACAHMRSVRYFAESLLNP-RNFP 275
Query: 345 AVSCPSYEYFEKGEC 359
A C SY+ F +C
Sbjct: 276 AYPCSSYDEFSNNKC 290
Score = 60.9 bits (148), Expect = 2e-10
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 8 AYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVG 67
+ + N+ VDW + +Y A N VG A+ + L + +VHL+G
Sbjct: 96 NLFQVEGVNVIVVDWGSGST-TFYRQATLNVRVVGAEVAKLLVELEEELNVSPENVHLIG 154
Query: 68 FSLGAHVVGMAGKHVK-SRQIRHVTG 92
SLGAHV G AG+ K ++ +TG
Sbjct: 155 HSLGAHVAGEAGRRTKGKTKLGRITG 180
>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase. Members of this
protein family are lipoprotein lipase (EC 3.1.1.34), a
eukaryotic triacylglycerol lipase active in plasma and
similar to pancreatic and hepatic triacylglycerol
lipases (EC 3.1.1.3). It is also called clearing factor.
It cleaves chylomicron and VLDL triacylglycerols; it
also has phospholipase A-1 activity.
Length = 442
Score = 123 bits (311), Expect = 1e-31
Identities = 78/252 (30%), Positives = 116/252 (46%), Gaps = 23/252 (9%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKD-DYNIFTVDWSPLAKVPWYNSAAR 172
+F +T I++HG+ P L A E++ N+ VDW A+ + SAA
Sbjct: 36 NFNHETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSAAY 95
Query: 173 NTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPA 232
T VG A+F++ + + +VHL+G+SLGAHV G+AG K ++ +TGLDPA
Sbjct: 96 -TKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTK-HKVNRITGLDPA 153
Query: 233 QVLFTKSGPDERLDASHAEWVDVVHTS-----GGYLGFSSSLGHRDFYPNGGDWPQPGCT 287
F + L A++VDV+HT+ +G +GH D YPNGG + QPGC
Sbjct: 154 GPTFEYADAPSTLSPDDADFVDVLHTNTRGSPDRSIGIQRPVGHIDIYPNGGTF-QPGCD 212
Query: 288 WDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHRRAYYYYAEAIRNHGKGFTAVS 347
+ G + D CSH R+ + + +++ N A
Sbjct: 213 IQETLLVIAEKGLGNM--------------DQLVKCSHERSIHLFIDSLLNEENPSMAYR 258
Query: 348 CPSYEYFEKGEC 359
C S E F KG C
Sbjct: 259 CSSKEAFNKGLC 270
Score = 50.7 bits (121), Expect = 7e-07
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 9 YLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGF 68
Y + N+ VDW A+ + SAA T VG A+F++ + + +VHL+G+
Sbjct: 68 YEREPSANVIVVDWLSRAQQHYPTSAAY-TKLVGKDVAKFVNWMQEEFNYPWDNVHLLGY 126
Query: 69 SLGAHVVGMAGKHVKSRQIRHVTG 92
SLGAHV G+AG K ++ +TG
Sbjct: 127 SLGAHVAGIAGSLTK-HKVNRITG 149
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 153
Score = 78.3 bits (193), Expect = 2e-17
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 12/127 (9%)
Query: 172 RNTMPVGIHTARFIDHLMDSTGADARD--VHLVGFSLGAHVVGMAGKHVKSRQ---IRHV 226
+ A + L+ S A D +H+ G SLG + G+AG ++ R + V
Sbjct: 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRV 60
Query: 227 TGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSGGYLGFSS------SLGHRDFYPNGGD 280
P +V + ++RLD S A +VD + + G +FY NGG
Sbjct: 61 YTFGPPRVGN-AAFAEDRLDPSDALFVDRIVNDNDIVPRLPPGGEGYPHGGAEFYINGGK 119
Query: 281 WPQPGCT 287
C
Sbjct: 120 SQPGCCK 126
Score = 38.6 bits (90), Expect = 0.001
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 36 RNTMPVGIHTARFIDHLIDSTGADARD--VHLVGFSLGAHVVGMAGKHVKSR 85
+ A + L+ S A D +H+ G SLG + G+AG ++ R
Sbjct: 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGR 52
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 45.9 bits (109), Expect = 7e-06
Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 21/153 (13%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWY-NSAARNTMPVGIHT 181
+L+HG G +++ PL L Y + D P + +S P +
Sbjct: 2 VLLHGAGGSAES--WRPLAE--ALAAG-YRVLAPDL------PGHGDSDGPPRTPYSLED 50
Query: 182 -ARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQVLFTKSG 240
A + L+D+ G V LVG SLG V A R + + + P
Sbjct: 51 DAADLAALLDALGL--GPVVLVGHSLGGAVALAAAARRPER-VAGLVLISPPL-----RD 102
Query: 241 PDERLDASHAEWVDVVHTSGGYLGFSSSLGHRD 273
+E L A A + ++ + +L
Sbjct: 103 LEELLAADAAALLALLRAALLDADLREALARLT 135
Score = 31.6 bits (72), Expect = 0.43
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 12 KDDYNIFTVDWSPLAKVPWY-NSAARNTMPVGIHT-ARFIDHLIDSTGADARDVHLVGFS 69
Y + D P + +S P + A + L+D+ G V LVG S
Sbjct: 22 AAGYRVLAPDL------PGHGDSDGPPRTPYSLEDDAADLAALLDALGL--GPVVLVGHS 73
Query: 70 LGAHVVGMA 78
LG V A
Sbjct: 74 LGGAVALAA 82
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 37.7 bits (88), Expect = 0.002
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 19/92 (20%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTA 182
+L+HG G + + PL R L YN+ VD+ P + ++ A
Sbjct: 3 VLLHGAGGDPEA--YAPLAR--ALASRGYNVVAVDY------PGHGASLG---------A 43
Query: 183 RFIDHLMDSTGADARDVHLVGFSLGAHVVGMA 214
+ ++ D + LVG SLG V +
Sbjct: 44 PDAEAVLADAPLDPERIVLVGHSLGGGVALLL 75
Score = 28.9 bits (65), Expect = 2.2
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVGMA 78
A + ++ D + LVG SLG V +
Sbjct: 43 APDAEAVLADAPLDPERIVLVGHSLGGGVALLL 75
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 35.8 bits (81), Expect = 0.025
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 112 FKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAA 171
++ +L+HGF +S + P+ + Y + D + A
Sbjct: 14 YREAGGGGPPLVLLHGFPGSSS--VWRPVFKVLPALAARYRVIAPDLRG----HGRSDPA 67
Query: 172 RNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVV 211
++ A + L+D+ G + V LVG S+G V
Sbjct: 68 GYSLS---AYADDLAALLDALGLE--KVVLVGHSMGGAVA 102
>gnl|CDD|183682 PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 116
Score = 30.9 bits (70), Expect = 0.32
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 157 DWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMD 190
+ +VP+ NSA NT+ +G AR+ + MD
Sbjct: 61 QYEAQYRVPYQNSADGNTVELGKEQARYSQNAMD 94
Score = 27.8 bits (62), Expect = 3.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 21 DWSPLAKVPWYNSAARNTMPVGIHTARFIDHLID 54
+ +VP+ NSA NT+ +G AR+ + +D
Sbjct: 61 QYEAQYRVPYQNSADGNTVELGKEQARYSQNAMD 94
>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 31.1 bits (71), Expect = 0.62
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 23/109 (21%)
Query: 116 KPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTM 175
P+ IL+HG G DE + PL + + SP V R
Sbjct: 15 DPAAPLLILLHGLGG--DELDLVPLPELIL---PNATLV----SPRGPVAENG-GPRFFR 64
Query: 176 PVGIHT-------------ARFIDHLMDSTGADARDVHLVGFSLGAHVV 211
+ A F++ L + G D+ + L+GFS GA++
Sbjct: 65 RYDEGSFDQEDLDLETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIA 113
Score = 27.7 bits (62), Expect = 8.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVV 75
A F++ L + G D+ + L+GFS GA++
Sbjct: 84 AEFLEELAEEYGIDSSRIILIGFSQGANIA 113
>gnl|CDD|176981 CHL00040, rbcL, ribulose-1,5-bisphosphate carboxylase/oxygenase
large subunit.
Length = 475
Score = 31.6 bits (72), Expect = 0.74
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 15/46 (32%)
Query: 140 LLRDAYLEKD-DYNI-FTVDWSPLAKVPWYNSAARNTMPV---GIH 180
LLRD ++EKD I FT DW L V +PV GIH
Sbjct: 348 LLRDDFIEKDRSRGIYFTQDWVSLPGV----------LPVASGGIH 383
>gnl|CDD|225783 COG3243, PhaC, Poly(3-hydroxyalkanoate) synthetase [Lipid
metabolism].
Length = 445
Score = 30.8 bits (70), Expect = 1.1
Identities = 25/111 (22%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 136 LMFPLLRD----AYLEKDDYNIFTVDW-SPLAKVPWYNSAARNTMPVGIHTARFIDHLMD 190
+ L + +L + ++F + W +P A + N + G+ A ID + D
Sbjct: 121 YILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDY--ILEGLSEA--IDTVKD 176
Query: 191 STGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQVLFTKSGP 241
TG +D++L+G+ +G ++ A + +++I+ +T L + V F+ +G
Sbjct: 177 ITGQ--KDINLIGYCVGGTLLAAALALMAAKRIKSLTLL-TSPVDFSHAGD 224
Score = 29.3 bits (66), Expect = 4.1
Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 14/159 (8%)
Query: 8 AYLEKDDYNIFTVDW-SPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLV 66
+L + ++F + W +P A + N + G+ A ID + D TG +D++L+
Sbjct: 133 RWLLEQGLDVFVISWRNPDASLAAKNLEDY--ILEGLSEA--IDTVKDITGQ--KDINLI 186
Query: 67 GFSLGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAECKPVFKHFKPSRRTK--IL 124
G+ +G ++ A + +++I+ +T +P V A +F + I+
Sbjct: 187 GYCVGGTLLAAALALMAAKRIKSLTLLTSP----VDFSHAGDLGIFANEATIEALDADIV 242
Query: 125 VHGFGDNSDESLMFPLLRDAYL-EKDDYNIFTVDWSPLA 162
G +++F LLR L N + PL
Sbjct: 243 QKGILPGWYMAIVFFLLRPNDLIWNYFVNNYLDGEQPLP 281
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 30.2 bits (68), Expect = 1.4
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLG----AHVVGMAGKHVKS 220
A ++ L+D+ G D V+LVG S+G VK+
Sbjct: 29 AEDLEALLDALGLD--KVNLVGHSMGGLIALAYAAKYPDRVKA 69
Score = 30.2 bits (68), Expect = 1.4
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLG----AHVVGMAGKHVKS 84
A ++ L+D+ G D V+LVG S+G VK+
Sbjct: 29 AEDLEALLDALGLD--KVNLVGHSMGGLIALAYAAKYPDRVKA 69
>gnl|CDD|223506 COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase
fold [General function prediction only].
Length = 345
Score = 30.0 bits (68), Expect = 1.8
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 17/95 (17%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHT- 181
+L HG +S+ L+R + + + + + NT P H+
Sbjct: 79 VLFHGLEGSSNSPYARGLMRALS--RRGWLVVVFHFRGCSGEA-------NTSPRLYHSG 129
Query: 182 -----ARFIDHLMDSTGADARDVHLVGFSLGAHVV 211
F+D L R ++ VGFSLG +++
Sbjct: 130 ETEDIRFFLDWLKARFPP--RPLYAVGFSLGGNML 162
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 29.9 bits (68), Expect = 2.4
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKHVKSRQIRHVTGLDPA 232
A + +D+ G + HLVG S+G V +A + +++ +T + PA
Sbjct: 184 AAAVLAFLDALGIER--AHLVGHSMGGAVALRLAARAP--QRVASLTLIAPA 231
>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated.
Length = 582
Score = 29.6 bits (67), Expect = 3.0
Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 27/102 (26%)
Query: 111 VFKHFKPSRRTKILVHGFGDNS---DESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWY 167
V++ P R T +LVHG+ DN D + PLL D + + D
Sbjct: 17 VYEWGDPDRPTVVLVHGYPDNHEVWDG--VAPLLA------DRFRVVAYD---------V 59
Query: 168 NSAARNTMPVGIHTARFIDHLMDSTGA--DA----RDVHLVG 203
A R++ P L D A DA R VHL+
Sbjct: 60 RGAGRSSAPKRTAAYTL-ARLADDFAAVIDAVSPDRPVHLLA 100
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 29.7 bits (67), Expect = 3.1
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGRKNPKD 98
+ ID + D TG RDVHLVG+S G A + +S+ I + +P D
Sbjct: 129 SEAIDTVKDVTG---RDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVD 178
Score = 28.9 bits (65), Expect = 5.3
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLGAHVVGM 213
+ ID + D TG RDVHLVG+S G GM
Sbjct: 129 SEAIDTVKDVTG---RDVHLVGYSQG----GM 153
>gnl|CDD|164824 PHA00653, mtd, major tropism determinant.
Length = 381
Score = 29.0 bits (64), Expect = 4.0
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 285 GCTWDYADRFSSSLGHRDFYPNGGD----WPQP-----GCTWDYAAVCSHRRAYYY 331
GC W + + F G ++ N G + QP G +W+Y ++ R AY+Y
Sbjct: 304 GCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGSWNYTSLSGSRAAYWY 359
>gnl|CDD|132235 TIGR03191, benz_CoA_bzdO, benzoyl-CoA reductase, bzd-type, O
subunit. Members of this family are the O subunit of
one of two related types of four-subunit ATP-dependent
benzoyl-CoA reductase. This enzyme system catalyzes the
dearomatization of benzoyl-CoA, a common intermediate in
pathways for the degradation for a number of different
aromatic compounds, such as phenol and toluene.
Length = 430
Score = 29.2 bits (65), Expect = 4.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 300 HRDFYPNGGDWPQPGCTWDYAAVCSHRRAYYYYAE 334
H D Y GG++P+P + CSH + Y + A+
Sbjct: 99 HLDEYAFGGEFPKPDFIFQTQICCSHAKWYQHVAK 133
>gnl|CDD|223324 COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases
[Carbohydrate transport and metabolism].
Length = 473
Score = 29.3 bits (66), Expect = 4.3
Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 35/129 (27%)
Query: 161 LAKVPWYNSAARNTMPVGI-----------HTARFIDHLMDSTGADARDVHLVGF----- 204
L + P Y+ R M GI H A FID L+ G + + V
Sbjct: 3 LVRRPTYD---RTQMKPGIVHFGAGNFHRAHQAVFIDDLLAEGGFN-DGIVFVDLNDDDV 58
Query: 205 --------SLGAHVVGMAGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEW---V 253
L V + ++ + V + + + P+ L A+ V
Sbjct: 59 RDALNAQDGLYTLVERGSAGGTEAEIVGSVIAV----LSAPEDEPEAVLAAAANPEIRIV 114
Query: 254 DVVHTSGGY 262
+ T GY
Sbjct: 115 SLTTTEKGY 123
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.447
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,907,670
Number of extensions: 1916733
Number of successful extensions: 1638
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1615
Number of HSP's successfully gapped: 35
Length of query: 376
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 278
Effective length of database: 6,590,910
Effective search space: 1832272980
Effective search space used: 1832272980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)