RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6793
(376 letters)
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 248 bits (635), Expect = 5e-79
Identities = 82/266 (30%), Positives = 119/266 (44%), Gaps = 25/266 (9%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARN 173
+F R+T+ ++HGF D +ES + + + N VDW ++ Y+ A++N
Sbjct: 64 NFNTGRKTRFIIHGFIDKGEES-WLSTMCQNMFKVESVNCICVDWKSGSR-TAYSQASQN 121
Query: 174 TMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQ 233
VG A + L S +VH++G SLG+H G AG+ + +TGLDPA+
Sbjct: 122 VRIVGAEVAYLVGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGA-VGRITGLDPAE 180
Query: 234 VLFTKSGPDERLDASHAEWVDVVHTSGGYL------GFSSSLGHRDFYPNGGDWPQPGCT 287
F + RLD S A++VDV+HT G S + GH DF+PNGG PGC
Sbjct: 181 PCFQGTPELVRLDPSDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGG-KEMPGCQ 239
Query: 288 WDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHRRAYYYYAEAIRNHGKGFTAVS 347
+ + G A C+H R+Y YY ++I N GF S
Sbjct: 240 KNVLSQIVDIDGIWQ-------------GTRDFAACNHLRSYKYYTDSILNP-DGFAGFS 285
Query: 348 CPSYEYFEKGECKAMDNSTLP-MGLN 372
C SY F +C + P MG
Sbjct: 286 CASYSDFTANKCFPCSSEGCPQMGHY 311
Score = 104 bits (260), Expect = 7e-25
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 8 AYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVG 67
+ + N VDW ++ Y+ A++N VG A + L S +VH++G
Sbjct: 93 NMFKVESVNCICVDWKSGSR-TAYSQASQNVRIVGAEVAYLVGVLQSSFDYSPSNVHIIG 151
Query: 68 FSLGAHVVGMAGKHVKSRQIRHVTG 92
SLG+H G AG+ + +TG
Sbjct: 152 HSLGSHAAGEAGRRTNGA-VGRITG 175
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 246 bits (629), Expect = 4e-78
Identities = 94/287 (32%), Positives = 136/287 (47%), Gaps = 25/287 (8%)
Query: 93 RKNPKDPEVRSMTAECKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYN 152
KNP ++ + +F+ SR+T ++HGF D ++S + L+ + N
Sbjct: 44 NKNPDSYQLITARDVATIKSSNFQSSRKTHFVIHGFRDRGEDS-WPSDMCKKILQVETTN 102
Query: 153 IFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVG 212
+VDWS AK Y A +N VG TA I L+ + +VH++G SLGAH G
Sbjct: 103 CISVDWSSGAK-AEYTQAVQNIRIVGAETAYLIQQLLTELSYNPENVHIIGHSLGAHTAG 161
Query: 213 MAGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSGGYL------GFS 266
AG+ ++ R + VTGLDPA+ F + + RLD S A++VDV+HT + G S
Sbjct: 162 EAGRRLEGR-VGRVTGLDPAEPCFQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMS 220
Query: 267 SSLGHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHR 326
+GH DF+PNGG PGC F G DY A C+H
Sbjct: 221 QKVGHMDFFPNGGK-QMPGCKRSSFSTFIDINGI------------WQGAQDYLA-CNHL 266
Query: 327 RAYYYYAEAIRNHGKGFTAVSCPSYEYFEKGECKAMDNSTLP-MGLN 372
+++ YY+ +I N GF A C SY+ F++ C P MG
Sbjct: 267 KSFEYYSSSILNP-DGFLAYPCDSYDKFQENGCFPCPAGGCPKMGHY 312
Score = 105 bits (264), Expect = 2e-25
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 1 MNVLPPPAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADA 60
L+ + N +VDWS AK Y A +N VG TA I L+ +
Sbjct: 87 WPSDMCKKILQVETTNCISVDWSSGAK-AEYTQAVQNIRIVGAETAYLIQQLLTELSYNP 145
Query: 61 RDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAECKPVFKHFKPSRR 120
+VH++G SLGAH G AG+ ++ R GR DP +P F+ R
Sbjct: 146 ENVHIIGHSLGAHTAGEAGRRLEGRV-----GRVTGLDP--------AEPCFQDASEEVR 192
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 242 bits (618), Expect = 1e-76
Identities = 81/260 (31%), Positives = 120/260 (46%), Gaps = 31/260 (11%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARN 173
+F +R+T+ ++HGF D+ + S + + + N VDW +K Y+ A++N
Sbjct: 65 NFNLNRKTRFIIHGFTDSGENS-WLSDMCKNMFQVEKVNCICVDWKGGSK-AQYSQASQN 122
Query: 174 TMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQ 233
VG A + L S +VH++G SLGAH G AGK + + +TGLDPA+
Sbjct: 123 IRVVGAEVAYLVQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGL-VGRITGLDPAE 181
Query: 234 VLFTKSGPDERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFYPNGGDWPQPGCTWDYADR 293
F + + RLD S A++VDV+HT + S G
Sbjct: 182 PYFQDTPEEVRLDPSDAKFVDVIHTDISPILPSLGFG----------------------- 218
Query: 294 FSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHRRAYYYYAEAIRNHGKGFTAVSCPSYEY 353
S +GH DF+PNGG PGC + C+H R+ YY +I N +GF C SY+
Sbjct: 219 MSQKVGHMDFFPNGGK-DMPGCKTGIS--CNHHRSIEYYHSSILNP-EGFLGYPCASYDE 274
Query: 354 FEKGECKAMDNSTLP-MGLN 372
F++ C P MG
Sbjct: 275 FQESGCFPCPAKGCPKMGHF 294
Score = 104 bits (260), Expect = 5e-25
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 14/113 (12%)
Query: 8 AYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVG 67
+ + N VDW +K Y+ A++N VG A + L S +VH++G
Sbjct: 94 NMFQVEKVNCICVDWKGGSK-AQYSQASQNIRVVGAEVAYLVQVLSTSLNYAPENVHIIG 152
Query: 68 FSLGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAECKPVFKHFKPSRR 120
SLGAH G AGK + GR DP +P F+ R
Sbjct: 153 HSLGAHTAGEAGKRLNGLV-----GRITGLDP--------AEPYFQDTPEEVR 192
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 241 bits (617), Expect = 2e-76
Identities = 91/287 (31%), Positives = 130/287 (45%), Gaps = 25/287 (8%)
Query: 93 RKNPKDPEVRSMTAECKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYN 152
+NP + + S T F +F+ R+T+ +VHGF D ++ + + + N
Sbjct: 44 NENPNNYQKISATEPDTIKFSNFQLDRKTRFIVHGFIDKGEDG-WLLDMCKKMFQVEKVN 102
Query: 153 IFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVG 212
VDW ++ Y A+ NT VG A + L G +VHL+G SLGAHVVG
Sbjct: 103 CICVDWRRGSR-TEYTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVG 161
Query: 213 MAGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSGGYL------GFS 266
AG+ ++ + +TGLDPA+ F + RLD S A +VDV+HT + G S
Sbjct: 162 EAGRRLEGH-VGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMS 220
Query: 267 SSLGHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHR 326
+GH DF+PNGG PGC + G + C+H
Sbjct: 221 QKVGHLDFFPNGGK-EMPGCQKNILSTIVDINGIWE-------------GTQNFVACNHL 266
Query: 327 RAYYYYAEAIRNHGKGFTAVSCPSYEYFEKGECKAMDNSTLP-MGLN 372
R+Y YYA +I N GF C SYE F++ +C P MG
Sbjct: 267 RSYKYYASSILNP-DGFLGYPCSSYEKFQQNDCFPCPEEGCPKMGHY 312
Score = 104 bits (260), Expect = 6e-25
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 14/120 (11%)
Query: 1 MNVLPPPAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADA 60
+ + + N VDW ++ Y A+ NT VG A + L G
Sbjct: 87 WLLDMCKKMFQVEKVNCICVDWRRGSR-TEYTQASYNTRVVGAEIAFLVQVLSTEMGYSP 145
Query: 61 RDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAECKPVFKHFKPSRR 120
+VHL+G SLGAHVVG AG+ ++ GR DP +P F+ R
Sbjct: 146 ENVHLIGHSLGAHVVGEAGRRLEGHV-----GRITGLDP--------AEPCFQGLPEEVR 192
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 239 bits (610), Expect = 3e-75
Identities = 84/287 (29%), Positives = 126/287 (43%), Gaps = 26/287 (9%)
Query: 93 RKNPKDPEVRSMTAECKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYN 152
KNP + + + +F+ ++T+ ++HGF D +E+ + + ++ N
Sbjct: 44 NKNPNNFQTLLPSDPSTIGASNFQTDKKTRFIIHGFIDKGEEN-WLLDMCKNMFKVEEVN 102
Query: 153 IFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVG 212
VDW ++ Y AA N VG A+ + L + V L+G SLGAHV G
Sbjct: 103 CICVDWKKGSQ-TSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAG 161
Query: 213 MAGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSGGYL------GFS 266
AG + +TGLDP + F + + RLD + A++VDV+HT L G S
Sbjct: 162 EAGSRTP--GLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTS 219
Query: 267 SSLGHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHR 326
+GH DF+PNGG+ PGC + D C+H
Sbjct: 220 QQMGHLDFFPNGGE-EMPGCKKNAL-------------SQIVDLDGIWEGTRDFVACNHL 265
Query: 327 RAYYYYAEAIRNHGKGFTAVSCPSYEYFEKGECKAMDNSTLP-MGLN 372
R+Y YY+E+I N GF + C SY FE +C + P MG
Sbjct: 266 RSYKYYSESILNP-DGFASYPCASYRAFESNKCFPCPDQGCPQMGHY 311
Score = 98.6 bits (245), Expect = 7e-23
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 15/113 (13%)
Query: 8 AYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVG 67
+ ++ N VDW ++ Y AA N VG A+ + L + V L+G
Sbjct: 94 NMFKVEEVNCICVDWKKGSQ-TSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIG 152
Query: 68 FSLGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAECKPVFKHFKPSRR 120
SLGAHV G AG GR DP + F+ R
Sbjct: 153 HSLGAHVAGEAGSRTPGL------GRITGLDP--------VEASFQGTPEEVR 191
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 55.4 bits (133), Expect = 8e-09
Identities = 31/204 (15%), Positives = 57/204 (27%), Gaps = 22/204 (10%)
Query: 79 GKHVKSRQIRHVTGRKNPKDPEVRSMTAECKPVFKHFKPSRRTKILVHGFGDNSDESLMF 138
G H+ S GR + + P++ + + + G G S
Sbjct: 1 GSHMASMTGGQQMGRGSMAALNKEMVNTLLGPIYTCHREGNPCFVFLSGAGFFSTADNFA 60
Query: 139 PLLRDAYLEKDDYNIFTVD-----WSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTG 193
++ D I T+D +SP++ I + +
Sbjct: 61 NIIDKL---PDSIGILTIDAPNSGYSPVSNQANVGLRD---------WVNAILMIFEHFK 108
Query: 194 ADARDVHLVGFSLGAHVV-GMAGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEW 252
L S+G + + K GL+P V+ ++G L A
Sbjct: 109 FQ--SYLLCVHSIGGFAALQIMNQSSK--ACLGFIGLEPTTVMIYRAGFSSDLYPQLALR 164
Query: 253 VDVVHTSGGYLGFSSSLGHRDFYP 276
+ T+ L + L F
Sbjct: 165 RQKLKTAADRLNYLKDLSRSHFSS 188
Score = 30.0 bits (67), Expect = 1.2
Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 17/76 (22%)
Query: 12 KDDYNIFTVD-----WSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLV 66
D I T+D +SP++ I + + L
Sbjct: 67 PDSIGILTIDAPNSGYSPVSNQANVGLRD---------WVNAILMIFEHFKFQ--SYLLC 115
Query: 67 GFSLGAHVV-GMAGKH 81
S+G + +
Sbjct: 116 VHSIGGFAALQIMNQS 131
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 46.3 bits (110), Expect = 3e-06
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 19/114 (16%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDY---NIFTVDWSPLAKVPWYNSAARNTMPVGI 179
++VHG G S + YL + ++ VD+ + N
Sbjct: 7 VMVHGIGGAS--FNFAGIKS--YLVSQGWSRDKLYAVDFWDKTGTNYNNGPV-------- 54
Query: 180 HTARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKHVKSRQIRHVTGLDPA 232
+RF+ ++D TGA + V +V S+G ++ +V L A
Sbjct: 55 -LSRFVQKVLDETGA--KKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGA 105
Score = 31.2 bits (71), Expect = 0.28
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 15/90 (16%)
Query: 7 PAYLEKDDY---NIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDV 63
+YL + ++ VD+ + N +RF+ ++D TGA + V
Sbjct: 23 KSYLVSQGWSRDKLYAVDFWDKTGTNYNNGPV---------LSRFVQKVLDETGA--KKV 71
Query: 64 HLVGFSLGAHVV-GMAGKHVKSRQIRHVTG 92
+V S+G ++ +V
Sbjct: 72 DIVAHSMGGANTLYYIKNLDGGNKVANVVT 101
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 47.7 bits (113), Expect = 3e-06
Identities = 32/223 (14%), Positives = 62/223 (27%), Gaps = 34/223 (15%)
Query: 123 ILVHGFGDNSDESLMFPLLRD--AYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIH 180
ILVHG + + L++ ++ + + + S G
Sbjct: 12 ILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVAN------LSGFQSDDGPN-GRGEQ 64
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDP-----AQVL 235
++ ++ +TGA V+LVG S G + VT +
Sbjct: 65 LLAYVKTVLAATGAT--KVNLVGHSQGGLTSRYVAAVAPDL-VASVTTIGTPHRGSEFAD 121
Query: 236 FTKSGPDERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFYPNGGDWPQPGCTWDYADRFS 295
F + + + G L SS+ ++D A +
Sbjct: 122 FVQGVLAYDPTGLSSTVIAAFVNVFGILTSSSNNTNQDALA--------------ALKTL 167
Query: 296 SSLGHRDF---YPNGGDWPQPGCTWDYAAVCSHRRAYYYYAEA 335
++ + YP+ G C + Y+ A
Sbjct: 168 TTAQAATYNQNYPSAGLGAPGSCQTGAPTETVGGNTHLLYSWA 210
Score = 33.9 bits (77), Expect = 0.075
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 7 PAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLV 66
L++ ++ + + + S G ++ ++ +TGA V+LV
Sbjct: 34 QEDLQQRGATVYVAN------LSGFQSDDGPN-GRGEQLLAYVKTVLAATGAT--KVNLV 84
Query: 67 GFSLGAHVVGMAGKHVKSRQIRHVTG 92
G S G + VT
Sbjct: 85 GHSQGGLTSRYVAAVAPDL-VASVTT 109
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 47.5 bits (112), Expect = 3e-06
Identities = 16/126 (12%), Positives = 32/126 (25%), Gaps = 16/126 (12%)
Query: 108 CKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWY 167
C+ + +LV G G +S + + Y + P
Sbjct: 22 CQGASPS--SVSKPILLVPGTGTTGPQSFDSNWIP--LSTQLGYTPCWISPPPFMLNDTQ 77
Query: 168 NSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKS--RQIRH 225
+ I L +G + ++ +S G V S ++
Sbjct: 78 VNTEY--------MVNAITALYAGSG--NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDR 127
Query: 226 VTGLDP 231
+ P
Sbjct: 128 LMAFAP 133
Score = 29.8 bits (66), Expect = 1.6
Identities = 9/81 (11%), Positives = 19/81 (23%), Gaps = 10/81 (12%)
Query: 8 AYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVG 67
+ Y + P + I L +G + ++
Sbjct: 54 PLSTQLGYTPCWISPPPFMLNDTQVNTEY--------MVNAITALYAGSGN--NKLPVLT 103
Query: 68 FSLGAHVVGMAGKHVKSRQIR 88
+S G V S + +
Sbjct: 104 WSQGGLVAQWGLTFFPSIRSK 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 6e-06
Identities = 45/248 (18%), Positives = 72/248 (29%), Gaps = 87/248 (35%)
Query: 71 GAHVVGM-----------------AGKHVKSR---QIRHVTGRKNPKDPEVRSMTAECKP 110
G+ GM A H K I + NP + +
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIV-INNPVNLTI--------- 1674
Query: 111 VFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSA 170
HF + +I +N +++F + D L+ + IF + +
Sbjct: 1675 ---HFGGEKGKRI-----RENYS-AMIFETIVDGKLKTE--KIFKEINEHSTSYTFRSEK 1723
Query: 171 A-----RNTMP----VGIHTARFIDHLMDSTGADARDVHLVGFSLG---AHVVGMAG--- 215
+ T P + A F + S G D G SLG A + +A
Sbjct: 1724 GLLSATQFTQPALTLMEK--AAF--EDLKSKGLIPADATFAGHSLGEYAA-LASLADVMS 1778
Query: 216 -----KHVKSR----QI---RHVTG--------LDPAQVLFTKSGPDERLDASHAEWVDV 255
+ V R Q+ R G ++P +V S E L V+
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV--AASFSQEALQ----YVVER 1832
Query: 256 VHTSGGYL 263
V G+L
Sbjct: 1833 VGKRTGWL 1840
Score = 42.7 bits (100), Expect = 2e-04
Identities = 45/301 (14%), Positives = 86/301 (28%), Gaps = 101/301 (33%)
Query: 45 TARF---IDHLIDSTGADAR-------------------DVHLVGFSLGAHVVGMAGKHV 82
+F + L++ + D+H + L V
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN---DTTLV 117
Query: 83 KSRQI-------RHVTGRKNPKDPE------VRSMTAECKPVFKHFKPSRRTKILVHGFG 129
K++++ R + R K V A+ +F G G
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-------------GQG 164
Query: 130 DNS---DESLMFPLLRDAYLEKDDYNIFTVDW--------SPLAKVPWYNSAARNTMPVG 178
+ +E LRD Y Y++ D S L + A G
Sbjct: 165 NTDDYFEE------LRDLY---QTYHVLVGDLIKFSAETLSELIRTT---LDAEKVFTQG 212
Query: 179 IHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRH------VTGLDPA 232
++ ++++ S D + + S ++G+ Q+ H + G P
Sbjct: 213 LNILEWLEN--PSNTPDKDYLLSIPISCP--LIGVI-------QLAHYVVTAKLLGFTPG 261
Query: 233 QV---LFTKSGPDERLDASHA-----EWVDVVHTSGGYLGFSSSLGHR--DFYPNGGDWP 282
++ L +G + L + A W + + +G R + YPN P
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 283 Q 283
Sbjct: 322 S 322
Score = 37.7 bits (87), Expect = 0.007
Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 64/174 (36%)
Query: 183 RFIDHLMDSTGADARDVHLVGFSL--GA--HVVGMAGKHVKS--------RQIRHVTGLD 230
+++ +S + V + SL GA VV +G +S R+ + +GLD
Sbjct: 351 DYVNKT-NSHLPAGKQVEI---SLVNGAKNLVV--SG-PPQSLYGLNLTLRKAKAPSGLD 403
Query: 231 PAQVLFTK------------SGP-------------DERLDASHAEW------VDVVHTS 259
+++ F++ + P ++ L ++ + + V T
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 260 GGY-L-GFSSSLGHRDFYPNGGDW--PQPGCTWDYADRFSSSLGH-RDFYPNGG 308
G L S S+ R D P W+ +F ++ H DF P GG
Sbjct: 464 DGSDLRVLSGSISERIV-----DCIIRLP-VKWETTTQFKAT--HILDFGP-GG 508
Score = 28.5 bits (63), Expect = 5.0
Identities = 26/160 (16%), Positives = 38/160 (23%), Gaps = 54/160 (33%)
Query: 232 AQVL---FTKS--GPDERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFYPNGGDWPQPGC 286
A L F K P E A+ E G +LG+ SSL +P
Sbjct: 30 ASQLQEQFNKILPEPTEGF-AADDEPTTPAELVGKFLGYVSSL------------VEPSK 76
Query: 287 TWDYADRFSSSLGH--RDFYPNGGD---------WPQPGCTWDYAAVCSHRRAYYYYAEA 335
+ + L + G D + + Y A
Sbjct: 77 VGQFDQVLNLCLTEFENCYL-EGNDIHALAAKLLQENDTTLVKTKELI---KN-YITARI 131
Query: 336 IRNHGKG-------FTAVSCPS---Y----------EYFE 355
+ F AV + +YFE
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Score = 27.7 bits (61), Expect = 9.6
Identities = 23/97 (23%), Positives = 30/97 (30%), Gaps = 34/97 (35%)
Query: 36 RNTMP----VGIHTARFIDHLIDSTGADARDVHLVGFSLG---AHVVGMAG--------K 80
+ T P + A F + S G D G SLG A + +A +
Sbjct: 1730 QFTQPALTLMEK--AAF--EDLKSKGLIPADATFAGHSLGEYAA-LASLADVMSIESLVE 1784
Query: 81 HVKSRQIRHVTGRK----NPKDPEVRS---MTAECKP 110
V R G P+D RS M A P
Sbjct: 1785 VVFYR------GMTMQVAVPRDELGRSNYGMIA-INP 1814
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 45.0 bits (107), Expect = 1e-05
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 21/101 (20%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTMPV 177
+ VHG G N +F L YLE DYN +D S P + +
Sbjct: 20 LFVHGSGCNLK---IFGELEK-YLE--DYNCILLDLKGHGESKGQC-PSTVYGYIDNV-- 70
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKH 217
A FI + + ++ L+G+S+G +V G+A K
Sbjct: 71 ----ANFITNSEVTKHQK--NITLIGYSMGGAIVLGVALKK 105
Score = 36.1 bits (84), Expect = 0.011
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVV-GMAGKH 81
A FI + + ++ L+G+S+G +V G+A K
Sbjct: 71 ANFITNSEVTKHQK--NITLIGYSMGGAIVLGVALKK 105
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 45.2 bits (106), Expect = 2e-05
Identities = 16/126 (12%), Positives = 32/126 (25%), Gaps = 16/126 (12%)
Query: 108 CKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWY 167
C+ + +LV G G +S + + Y + P
Sbjct: 56 CQGASPS--SVSKPILLVPGTGTTGPQSFDSNWIP--LSAQLGYTPCWISPPPFMLNDTQ 111
Query: 168 NSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKS--RQIRH 225
+ I L +G + ++ +S G V S ++
Sbjct: 112 VNTEY--------MVNAITTLYAGSG--NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDR 161
Query: 226 VTGLDP 231
+ P
Sbjct: 162 LMAFAP 167
Score = 27.8 bits (61), Expect = 5.2
Identities = 9/79 (11%), Positives = 18/79 (22%), Gaps = 10/79 (12%)
Query: 8 AYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVG 67
+ Y + P + I L +G + ++
Sbjct: 88 PLSAQLGYTPCWISPPPFMLNDTQVNTEY--------MVNAITTLYAGSGN--NKLPVLT 137
Query: 68 FSLGAHVVGMAGKHVKSRQ 86
+S G V S +
Sbjct: 138 WSQGGLVAQWGLTFFPSIR 156
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 42.6 bits (99), Expect = 1e-04
Identities = 38/220 (17%), Positives = 62/220 (28%), Gaps = 21/220 (9%)
Query: 116 KPSRRTK---ILVHGFGDNSDESLMFPLLRD----------AYLEKDDY---NIFTVDWS 159
TK I +HG GDN+ M P A L+ Y IF V +
Sbjct: 34 GSCTATKTPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYL 93
Query: 160 PLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVK 219
++ ++ FID + TG V +V S+G + ++
Sbjct: 94 SSSEQG-SAQYNYHSSTKYAIIKTFIDKVKAYTGKS--QVDIVAHSMGVSMSLATLQYYN 150
Query: 220 -SRQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFYPNG 278
+R L +A+ + + GF + +
Sbjct: 151 NWTSVRKFINLAGGIRGLYSCYYTGYANAAAPTCGSQNYYNSYTFGFFPEGWYYGVW-VS 209
Query: 279 GDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWPQPGCTWD 318
W G T D + + + G Q GC
Sbjct: 210 NPWTGSGSTNSMRDMPAKRTAVSFYTLSAGFKDQVGCATA 249
Score = 32.2 bits (72), Expect = 0.28
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 8 AYLEKDDY---NIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVH 64
A L+ Y IF V + ++ ++ FID + TG V
Sbjct: 75 AELKARGYNDCEIFGVTYLSSSEQG-SAQYNYHSSTKYAIIKTFIDKVKAYTGKS--QVD 131
Query: 65 LVGFSLGA 72
+V S+G
Sbjct: 132 IVAHSMGV 139
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 41.9 bits (99), Expect = 2e-04
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWY-NSAARNTMPVGIHT 181
+L+HG G + F D +E Y + +D P + S +
Sbjct: 40 VLLHGSGPGATGWANFSRNIDPLVEAG-YRVILLDC------PGWGKSDSVVNSGSRSDL 92
Query: 182 -ARFIDHLMDSTGADARDVHLVGFSLGAHV-VGMAGKH 217
AR + ++D +HL+G S+G H V K
Sbjct: 93 NARILKSVVDQLDIA--KIHLLGNSMGGHSSVAFTLKW 128
Score = 35.0 bits (81), Expect = 0.031
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 44 HTARFIDHLIDSTGADARDVHLVGFSLGAHV-VGMAGKH 81
+D L D +HL+G S+G H V K
Sbjct: 96 ILKSVVDQL------DIAKIHLLGNSMGGHSSVAFTLKW 128
>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase,
glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens}
SCOP: c.69.1.13
Length = 302
Score = 42.1 bits (98), Expect = 2e-04
Identities = 34/209 (16%), Positives = 59/209 (28%), Gaps = 29/209 (13%)
Query: 106 AECKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVP 165
A P +KP I+VHG D+S LL + +D
Sbjct: 27 AAPAPHRASYKPV----IVVHGLFDSSYS--FRHLLEYINETHPGTVVTVLD-------- 72
Query: 166 WYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRH 225
+ P+ F + ++ + VHL+ +S G + R +
Sbjct: 73 -LFDGRESLRPLWEQVQGFREAVVPIMAKAPQGVHLICYSQGG---------LVCRALLS 122
Query: 226 VTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSGG----YLGFSSSLGHRDFYPNGGDW 281
V + S P +++ + + Y S G N
Sbjct: 123 VMDDHNVDSFISLSSPQMG-QYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHD 181
Query: 282 PQPGCTWDYADRFSSSLGHRDFYPNGGDW 310
P + A F + + +PN W
Sbjct: 182 PHHDDLYLNASSFLALINGERDHPNATVW 210
>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein
structure initiative, MCSG, midwest center for
structural genomics; 1.8A {Bacillus subtilis} SCOP:
c.69.1.31
Length = 192
Score = 40.1 bits (93), Expect = 4e-04
Identities = 33/197 (16%), Positives = 57/197 (28%), Gaps = 33/197 (16%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTA 182
++HG+ S + FP L+ L D ++ P P
Sbjct: 8 YIIHGYR-ASSTNHWFPWLKK-RLLADGVQADILNM-PNPLQP--------------RLE 50
Query: 183 RFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQVLFTKSGPD 242
++D L + +LV SLG + +H++ + G+
Sbjct: 51 DWLDTLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQ--LRAALGGIILVSGFAKSLPTL 108
Query: 243 ERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFYPNGGDWPQP-GCTWDYADRFSSSL--- 298
+ LD D + S HR + D P + D A + ++L
Sbjct: 109 QMLDEFTQGSFD-------HQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQIDAALYEV 161
Query: 299 ---GHRDFYPNGGDWPQ 312
GH P
Sbjct: 162 QHGGHFLEDEGFTSLPI 178
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 40.5 bits (95), Expect = 5e-04
Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 21/101 (20%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVD-----WSPLAKVPWYNSAARNTMPV 177
I +HG + L + Y +D S ++
Sbjct: 25 IFLHGLSLDKQ---STCLFFEPLSNVGQYQRIYLDLPGMGNSDPISPSTSDNVL------ 75
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKH 217
I+ + + GA L G S G ++ +A
Sbjct: 76 ----ETLIEAIEEIIGAR--RFILYGHSYGGYLAQAIAFHL 110
Score = 30.8 bits (70), Expect = 0.57
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVV-GMAGKH 81
I+ + + GA L G S G ++ +A
Sbjct: 76 ETLIEAIEEIIGAR--RFILYGHSYGGYLAQAIAFHL 110
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 39.6 bits (93), Expect = 8e-04
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 20/94 (21%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTMPV 177
+LVHG + + + L + T+D +P +
Sbjct: 20 VLVHGLLGSGA---DWQPVLSH-LARTQCAALTLDLPGHGTNP--------ERHCDNFA- 66
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHVV 211
I+ + + V LVG+SLG ++
Sbjct: 67 --EAVEMIEQTVQAHVTSEVPVILVGYSLGGRLI 98
Score = 31.9 bits (73), Expect = 0.29
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 16/71 (22%)
Query: 10 LEKDDYNIFTVDW-----SPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVH 64
L + T+D +P + I+ + + V
Sbjct: 39 LARTQCAALTLDLPGHGTNP--------ERHCDNFA---EAVEMIEQTVQAHVTSEVPVI 87
Query: 65 LVGFSLGAHVV 75
LVG+SLG ++
Sbjct: 88 LVGYSLGGRLI 98
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate
inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa}
SCOP: c.69.1.18
Length = 285
Score = 39.7 bits (92), Expect = 0.001
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 16/109 (14%)
Query: 123 ILVHGFGDNSD--ESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIH 180
+L HG + + + A L +D ++ + S S R G
Sbjct: 11 VLAHGMLGFDNILGVDYWFGIPSA-LRRDGAQVYVTEVS-----QLDTSEVR-----GEQ 59
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGL 229
+ ++ ++ +G V+L+G S G + I T +
Sbjct: 60 LLQQVEEIVALSGQP--KVNLIGHSHGGPTIRYVAAVRPDL-IASATSV 105
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 38.9 bits (91), Expect = 0.001
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVD-----WSPLAKVPWYNSAARNTMPV 177
I++HG G + + +++ Y + D S +
Sbjct: 37 IMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGFNKSDAVVMDEQRGLVN----- 90
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHV-VGMAGKH 217
AR + LMD+ D HLVG ++G + A ++
Sbjct: 91 ----ARAVKGLMDALDID--RAHLVGNAMGGATALNFALEY 125
Score = 31.5 bits (72), Expect = 0.41
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 44 HTARFIDHLIDSTGADARDVHLVGFSLGAHV-VGMAGKH 81
+D L D HLVG ++G + A ++
Sbjct: 93 AVKGLMDAL------DIDRAHLVGNAMGGATALNFALEY 125
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 38.9 bits (91), Expect = 0.002
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHT- 181
IL+HG G ++ + + Y + +D + A+ +
Sbjct: 40 ILIHGGGAGAESEGNWRNVIPIL--ARHYRVIAMDM------LGFGKTAKPDIEYTQDRR 91
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLGAHV-VGMAGKH 217
R + + + D + V +VG S+G +G++ H
Sbjct: 92 IRHLHDFIKAMNFDGK-VSIVGNSMGGATGLGVSVLH 127
Score = 33.1 bits (76), Expect = 0.11
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHV-VGMAGKH 81
R + I + D + V +VG S+G +G++ H
Sbjct: 92 IRHLHDFIKAMNFDGK-VSIVGNSMGGATGLGVSVLH 127
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 37.9 bits (88), Expect = 0.003
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 24/134 (17%)
Query: 99 PEVRSMTAECKPVFKHFKPSRRTK---ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFT 155
E + + ++ + ++ L+HG G DE+ + PL R + +
Sbjct: 7 IENSPLLTDLAFPYRLLGAGKESRECLFLLHGSG--VDETTLVPLAR--RIAPTATLV-- 60
Query: 156 VDWSPLAKVP------WYN-SAARNTMPVGIHTAR-----FIDHLMDSTGADARDVHLVG 203
+ ++P W+ I F + G + +G
Sbjct: 61 ---AARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLG 117
Query: 204 FSLGAHVVGMAGKH 217
+S GA++V
Sbjct: 118 YSNGANLVSSLMLL 131
Score = 32.5 bits (74), Expect = 0.16
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVGMAGKH 81
A F + G + +G+S GA++V
Sbjct: 96 AAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLL 131
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 38.1 bits (89), Expect = 0.003
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 22/101 (21%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTMPV 177
+ +HGF +S + + + D+Y++ T+D + +N
Sbjct: 20 VFLHGFLSDSR---TYHNHIEKF--TDNYHVITIDLPGHGEDQSSMDETWNFD------- 67
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKH 217
+ +D ++D + L G+S+G V A
Sbjct: 68 --YITTLLDRILDKYKDK--SITLFGYSMGGRVALYYAING 104
Score = 30.0 bits (68), Expect = 1.3
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 44 HTARFIDHLIDSTGADARDVHLVGFSLGAHVV-GMAGKH 81
+ +D ++D + L G+S+G V A
Sbjct: 68 YITTLLDRILDKYKDK--SITLFGYSMGGRVALYYAING 104
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 38.0 bits (89), Expect = 0.003
Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 32/107 (29%)
Query: 123 ILVHGFGDNSD--ESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTM 175
+L HGFG + + ++ L + + + D+ S + +++ +++
Sbjct: 32 LLAHGFGCDQNMWRFMLPEL-------EKQFTVIVFDYVGSGQSD---LESFSTKRYSSL 81
Query: 176 PVGIHT-----ARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKH 217
+ L D +V ++G S+ + + G+A H
Sbjct: 82 ----EGYAKDVEEILVAL------DLVNVSIIGHSVSSIIAGIASTH 118
Score = 31.1 bits (71), Expect = 0.55
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVGMAGKH 81
+ L D +V ++G S+ + + G+A H
Sbjct: 89 EEILVAL------DLVNVSIIGHSVSSIIAGIASTH 118
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 37.0 bits (86), Expect = 0.006
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 25/135 (18%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVD-------WSPLAKVPW 166
F+ R +L+HGF NS + + L R +LE Y L
Sbjct: 11 FFEAGERAVLLLHGFTGNSAD--VRMLGR--FLESKGYTCHAPIYKGHGVPPEELVHTGP 66
Query: 167 YNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHV 226
+ + L + + + G SLG + K + I +
Sbjct: 67 DDWWQ--------DVMNGYEFLKNKGY---EKIAVAGLSLGGVF---SLKLGYTVPIEGI 112
Query: 227 TGLDPAQVLFTKSGP 241
+ + ++
Sbjct: 113 VTMCAPMYIKSEETM 127
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 36.9 bits (86), Expect = 0.008
Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 19/101 (18%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTMPV 177
+L+HG G + F +++ VD S +
Sbjct: 40 VLLHGGGPGAASWTNFSRNIAVL--ARHFHVLAVDQPGYGHSDKRAEHGQFNRYA----- 92
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHV-VGMAGKH 217
A + L D G V LVG +LG V A +
Sbjct: 93 ----AMALKGLFDQLGLG--RVPLVGNALGGGTAVRFALDY 127
Score = 31.1 bits (71), Expect = 0.44
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 7/39 (17%)
Query: 44 HTARFIDHLIDSTGADARDVHLVGFSLGAHV-VGMAGKH 81
D L V LVG +LG V A +
Sbjct: 95 ALKGLFDQL------GLGRVPLVGNALGGGTAVRFALDY 127
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 35.3 bits (81), Expect = 0.018
Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 22/123 (17%)
Query: 117 PSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW------SPLAKVPWYNSA 170
+R + +L+HG +S+ L L + Y +D A
Sbjct: 30 QARFSVLLLHGIRFSSETWQNLGTLHR--LAQAGYRAVAIDLPGLGHSKEAAAPAPIGEL 87
Query: 171 ARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKHVKSRQIRHVTGL 229
A + A +D L + ++ SL Q+ +
Sbjct: 88 APGS-----FLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAP--GSQLPGFVPV 134
Query: 230 DPA 232
P
Sbjct: 135 API 137
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 35.6 bits (82), Expect = 0.020
Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 16/141 (11%)
Query: 117 PSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMP 176
I+ HGF N + SL+ + L ++ D++ + M
Sbjct: 44 EIYDMAIIFHGFTANRNTSLLREIAN--SLRDENIASVRFDFNGHGD----SDGKFENMT 97
Query: 177 VG-----IHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDP 231
V + ++++ T R+++LVG + G V M I+ V L P
Sbjct: 98 VLNEIEDANAI--LNYV--KTDPHVRNIYLVGHAQGGVVASMLAGLYPDL-IKKVVLLAP 152
Query: 232 AQVLFTKSGPDERLDASHAEW 252
A L + ++
Sbjct: 153 AATLKGDALEGNTQGVTYNPD 173
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 35.1 bits (81), Expect = 0.021
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 21/119 (17%)
Query: 115 FKPSRRTK---ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVD----------WSPL 161
FK R+ +L+H G DE + + + + I ++ + L
Sbjct: 9 FKAGRKDLAPLLLLHSTG--GDEHQLVEIAE--MI-APSHPILSIRGRINEQGVNRYFKL 63
Query: 162 AKVPWYNSAARNTMPVGIHTAR---FIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKH 217
+ + + + T + L + D + +G+S GA+V
Sbjct: 64 RGLGGFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLR 122
Score = 28.6 bits (64), Expect = 2.4
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVGMAGKH 81
+ L + D + +G+S GA+V
Sbjct: 87 TDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLR 122
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 35.0 bits (81), Expect = 0.028
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLGAHVVGM-AGKHVKSRQIRHVTGLDPAQVLFTKSG 240
++ L D +D LVGFS G V + +R I V L + K+
Sbjct: 81 NTVLETL------DLQDAVLVGFSTGTGEVARYVSSYGTAR-IAKVAFLASLEPFLLKT- 132
Query: 241 PDERLDASHAEWVD 254
D A+ E+ D
Sbjct: 133 DDNPDGAAPQEFFD 146
Score = 32.3 bits (74), Expect = 0.24
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVGM-AGKHVKSR 85
++ L D +D LVGFS G V + +R
Sbjct: 81 NTVLETL------DLQDAVLVGFSTGTGEVARYVSSYGTAR 115
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 34.6 bits (80), Expect = 0.045
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 21/93 (22%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTMPV 177
+L+HG +S M+ + Y + VD + +
Sbjct: 71 VLLHGALFSST---MWYPNIADW--SSKYRTYAVDIIGDKNKSIPENVSGTRT------- 118
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHV 210
A ++ + D+ G + H++G SLG
Sbjct: 119 --DYANWLLDVFDNLGIEK--SHMIGLSLGGLH 147
Score = 28.1 bits (63), Expect = 4.9
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHV 74
A ++ + D+ G + H++G SLG
Sbjct: 121 ANWLLDVFDNLGIEK--SHMIGLSLGGLH 147
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 34.7 bits (79), Expect = 0.046
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 8/123 (6%)
Query: 117 PSRRTKILVHGFGDNSD--ESLMFPLL-RDAYLEKDDYNIFTVDWSPLAKVPWYNSAARN 173
+R + +HG G + E + L+ DA + +D N
Sbjct: 50 ATRLNLVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDSAVRNRGRLG 109
Query: 174 TMPVGIHTAR----FIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGL 229
T I AR + S + ++G S+G + + +
Sbjct: 110 TNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNL-FHLLILI 168
Query: 230 DPA 232
+P
Sbjct: 169 EPV 171
Score = 27.4 bits (60), Expect = 9.4
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVGMA 78
+ + S + ++G S+G
Sbjct: 122 LKIATCELGSIDSHPALNVVIGHSMGGFQALAC 154
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 33.7 bits (77), Expect = 0.060
Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARN 173
++ + +L+H + + ++ M + R L++ Y ++ +S V + +
Sbjct: 17 EYEGTDTGVVLLHAYTGSPND--MNFMAR--ALQRSGYGVYVPLFSGHGTVEPLDILTKG 72
Query: 174 TMPVGIHTAR-FIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSR 221
+ + + H+ A V + G SLG A + +
Sbjct: 73 NPDIWWAESSAAVAHMT----AKYAKVFVFGLSLGGIFAMKALETLPGI 117
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 34.4 bits (79), Expect = 0.062
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLGAHVVGM-AGKHVKSRQIRHVTGLDPAQVLFTKSG 240
++ L D +D LVGFS+G V + +R I V L + K+
Sbjct: 82 NTVLETL------DLQDAVLVGFSMGTGEVARYVSSYGTAR-IAAVAFLASLEPFLLKT- 133
Query: 241 PDERLDASHAEWVD 254
D A+ E+ D
Sbjct: 134 DDNPDGAAPQEFFD 147
Score = 31.7 bits (72), Expect = 0.39
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVGMA 78
++ L D +D LVGFS+G V
Sbjct: 82 NTVLETL------DLQDAVLVGFSMGTGEVARY 108
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 33.8 bits (78), Expect = 0.066
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 14/93 (15%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTMPV 177
+L+HG G + + + + +++ + D S Y + +
Sbjct: 33 VLLHGAGPGAHAASNWRPIIPDL--AENFFVVAPDLIGFGQSE--YPETYPGHIMSWVG- 87
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHV 210
I LM+ G + H+VG S+G V
Sbjct: 88 --MRVEQILGLMNHFGIEK--SHIVGNSMGGAV 116
Score = 28.4 bits (64), Expect = 3.5
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 44 HTARFIDHL-IDSTGADARDVHLVGFSLGAHV 74
++H I+ H+VG S+G V
Sbjct: 92 QILGLMNHFGIEK-------SHIVGNSMGGAV 116
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 33.8 bits (76), Expect = 0.084
Identities = 30/210 (14%), Positives = 61/210 (29%), Gaps = 19/210 (9%)
Query: 117 PSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAA 171
S + + G + + YL ++ +N++T+D+ P K + A
Sbjct: 61 SSGEQLVTISWNGVHYTIPDYRKSI-VLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTA 119
Query: 172 RNTMPVGIH-TARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLD 230
I + + +G + ++L G S G I+ + LD
Sbjct: 120 NWGWSTWISDIKEVVSFIKRDSGQE--RIYLAGESFGGIAALNYSSLYWKNDIKGLILLD 177
Query: 231 PAQVLFTKSGPDERLDASHAEWVDVVHTSGGYL-----GFSSSLGHRDFYPNGGDWPQPG 285
TK G + ++ + G Y+ G ++ + P P
Sbjct: 178 GG---PTKHGIRPKFYTPEVNSIEEMEAKGIYVIPSRGGPNNPIWSYALANPDMPSPDPK 234
Query: 286 CTW--DYADRFSSSLGHRDFYPNGGDWPQP 313
D+ G + Y +
Sbjct: 235 YKSISDFLMDSLYVTGSANPYDYPYSKKED 264
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 33.4 bits (77), Expect = 0.096
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVGM-AGKHVKSR 85
A+ I+HL D ++V LVGFS+G V +H +R
Sbjct: 77 AQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSAR 111
Score = 33.4 bits (77), Expect = 0.096
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLGAHVVGM-AGKHVKSR 221
A+ I+HL D ++V LVGFS+G V +H +R
Sbjct: 77 AQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSAR 111
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 33.1 bits (76), Expect = 0.10
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 13/98 (13%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYN-SAARNTMPVGIHT 181
IL+HG G + L A Y + D + + +
Sbjct: 29 ILIHGSGPGVSAYANWRLTIPAL--SKFYRVIAPDM------VGFGFTDRPENYNYSKDS 80
Query: 182 -ARFIDHLMDSTGADARDVHLVGFSLGAHV-VGMAGKH 217
I +MD+ + H+VG + G + + A ++
Sbjct: 81 WVDHIIGIMDALEIE--KAHIVGNAFGGGLAIATALRY 116
Score = 29.6 bits (67), Expect = 1.4
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 44 HTARFIDHLIDSTGADARDVHLVGFSLGAHV-VGMAGKH 81
H +D L + H+VG + G + + A ++
Sbjct: 84 HIIGIMDAL------EIEKAHIVGNAFGGGLAIATALRY 116
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 32.9 bits (75), Expect = 0.10
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 28/114 (24%)
Query: 116 KPSRRTKILVHGFGDNS---DESLMFPLLRDAYLEKDDYNIFTVD--------WSPLAKV 164
+RR+ L HG+ S D++ +F YN++ D S +
Sbjct: 24 DSNRRSIALFHGYSFTSMDWDKADLFNNYSKI-----GYNVYAPDYPGFGRSASSEKYGI 78
Query: 165 PWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKH 217
+ H A FI + + G ++G S+G +V ++
Sbjct: 79 DRGDLK---------HAAEFIRDYLKANGVA--RSVIMGASMGGGMVIMTTLQY 121
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 33.0 bits (76), Expect = 0.11
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 25/105 (23%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPW----YNSAARN 173
+L+ S E+ P L L K + + D S + + A+
Sbjct: 26 VLLLPGMLGSGETDFGPQL--KNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAK- 82
Query: 174 TMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKH 217
+ L + V L+G+S G A K+
Sbjct: 83 ------DAVDLMKAL------KFKKVSLLGWSDGGITALIAAAKY 115
Score = 31.1 bits (71), Expect = 0.42
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 7/39 (17%)
Query: 44 HTARFIDHLIDSTGADARDVHLVGFSLGAHVV-GMAGKH 81
+ L + V L+G+S G A K+
Sbjct: 83 DAVDLMKAL------KFKKVSLLGWSDGGITALIAAAKY 115
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 33.1 bits (76), Expect = 0.12
Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 25/103 (24%)
Query: 123 ILVHGFGDNSD--ESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTM 175
+ H + + +D + P D Y+++ V+ S AK + +M
Sbjct: 27 CVTHLYSEYNDNGNTFANPF-------TDHYSVYLVNLKGCGNSDSAKND-----SEYSM 74
Query: 176 PVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKH 217
T + ++ + ++ + G S G + A +
Sbjct: 75 T---ETIKDLEAIREALYIN--KWGFAGHSAGGMLALVYATEA 112
Score = 27.3 bits (61), Expect = 9.1
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 33 SAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGFSLGAHVV-GMAGKH 81
+ + +M T + ++ + ++ + G S G + A +
Sbjct: 68 NDSEYSMT---ETIKDLEAIREALYIN--KWGFAGHSAGGMLALVYATEA 112
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 33.0 bits (76), Expect = 0.12
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 20/94 (21%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTMPV 177
+ GFG + ++ + A E +D+ + D+ S + Y+ T+
Sbjct: 24 MFAPGFGCDQS---VWNAVAPA-FE-EDHRVILFDYVGSGHSD---LRAYDLNRYQTLDG 75
Query: 178 -GIHTARFIDHLMDSTGADARDVHLVGFSLGAHV 210
+ L D ++ VG S+GA +
Sbjct: 76 YAQDVLDVCEAL------DLKETVFVGHSVGALI 103
Score = 29.1 bits (66), Expect = 2.3
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHV 74
+ L D ++ VG S+GA +
Sbjct: 81 LDVCEAL------DLKETVFVGHSVGALI 103
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 32.9 bits (75), Expect = 0.13
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 23/111 (20%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVD-------WSPLAKVPW 166
+ + +LVHGF M PL K Y + + + + +
Sbjct: 35 YAENGPVGVLLVHGFTGTPHS--MRPLAE--AYAKAGYTVCLPRLKGHGTHYEDMERTTF 90
Query: 167 YNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKH 217
++ A L + + + G S+G + +H
Sbjct: 91 HDWVA--------SVEEGYGWLK----QRCQTIFVTGLSMGGTLTLYLAEH 129
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 33.0 bits (74), Expect = 0.15
Identities = 22/164 (13%), Positives = 45/164 (27%), Gaps = 37/164 (22%)
Query: 101 VRSMTAECKPVFKHFKPSRRTKILVHGFGDNSDE-SLMFPLLRDA-----YLEKDDYNIF 154
+ + + R + VHG ++ + Y++ +Y+
Sbjct: 7 LVLLVFAVQVAAAE--DFRPV-VFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTI 63
Query: 155 TVDWSPLAKVPWYNSAARNTMPVGIHT------------------------ARFIDHLMD 190
+ + + + + + R ID +
Sbjct: 64 SWALVVETDMLFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALA 123
Query: 191 STGADARDVHLVGFSLGAHVVGMAGKHVKSRQ--IRHVTGLDPA 232
+GAD V LVG S+G + R + H+ LD
Sbjct: 124 ESGADK--VDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGV 165
Score = 27.6 bits (60), Expect = 7.3
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGA 72
R ID + +GAD V LVG S+G
Sbjct: 115 DRVIDEALAESGADK--VDLVGHSMGT 139
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 33.1 bits (75), Expect = 0.15
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 7 PAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLV 66
+ DYN+ VD P + + I ++D A + +
Sbjct: 180 GYSGWEHDYNVLMVDL------PGQGKNPNQGLHFEVDARAAISAILDWYQAPTEKIAIA 233
Query: 67 GFSLGAHVVGMA 78
GFS G + A
Sbjct: 234 GFSGGGYFTAQA 245
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 32.9 bits (75), Expect = 0.15
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 49 IDHLIDSTGADARDVHLVGFSLGAHVVGMA 78
D L DA + +VG S G ++ +
Sbjct: 89 YDQLASLPYVDAHSIAVVGLSYGGYLSALL 118
Score = 31.3 bits (71), Expect = 0.38
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 185 IDHLMDSTGADARDVHLVGFSLGAHVVGMA 214
D L DA + +VG S G ++ +
Sbjct: 89 YDQLASLPYVDAHSIAVVGLSYGGYLSALL 118
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 32.3 bits (74), Expect = 0.18
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLGAHVVG-MAGKHVKSRQIRHVTGLDPAQVLFTKSG 240
A+ I+HL D RD L GFS G V G+H +R + + L K+
Sbjct: 77 AQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTAR-VAKAGLISAVPPLMLKT- 128
Query: 241 PDERLDASHAEWVD 254
+ E D
Sbjct: 129 -EANPGGLPMEVFD 141
Score = 32.3 bits (74), Expect = 0.21
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVG-MAGKHVKSR 85
A+ I+HL D RD L GFS G V G+H +R
Sbjct: 77 AQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTAR 111
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 32.2 bits (74), Expect = 0.18
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 28/101 (27%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTMPV 177
+L+HG+G N++ ++ + + L + + VD S + A
Sbjct: 17 VLLHGWGLNAE---VWRCIDEE-LS-SHFTLHLVDLPGFGRSR--GFGALSLAD------ 63
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKH 217
A + +G+SLG V +A H
Sbjct: 64 ---MAEAVLQQAP------DKAIWLGWSLGGLVASQIALTH 95
Score = 28.4 bits (64), Expect = 3.3
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 7/37 (18%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVV-GMAGKH 81
A + +G+SLG V +A H
Sbjct: 65 AEAVLQQAP------DKAIWLGWSLGGLVASQIALTH 95
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 32.1 bits (73), Expect = 0.19
Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 116 KPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVD----------WSPLAKVP 165
S+ +L+HG G +E + PL + + ++ +V +
Sbjct: 35 DTSKPVLLLLHGTG--GNELDLLPLAE--IV-DSEASVLSVRGNVLENGMPRFFRRLAEG 89
Query: 166 WYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKH 217
++ + F+D D ++ +G+S GA++ H
Sbjct: 90 IFDEEDLIFRTKEL--NEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFH 139
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 32.5 bits (74), Expect = 0.22
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 17/106 (16%)
Query: 116 KPSRRTKILVHGFGDNSDE-SLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYN-SAARN 173
K + RT +L+HG + +L DA Y + VD + S+
Sbjct: 43 KANGRTILLMHGKNFCAGTWERTIDVLADA-----GYRVIAVDQ------VGFCKSSKPA 91
Query: 174 TMPVGIHT-ARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKH 217
A L++ G ++G S+G + A +
Sbjct: 92 HYQYSFQQLAANTHALLERLGVA--RASVIGHSMGGMLATRYALLY 135
Score = 30.2 bits (68), Expect = 0.97
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Query: 44 HTARFIDHLIDSTGADARDVHLVGFSLGAHVV-GMAGKH 81
+T ++ L ++G S+G + A +
Sbjct: 103 NTHALLERL------GVARASVIGHSMGGMLATRYALLY 135
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 32.3 bits (74), Expect = 0.23
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVGM-AGKHVKSR 85
+ L D RDV LV S+G + G+H R
Sbjct: 77 NDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGR 111
Score = 31.2 bits (71), Expect = 0.43
Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 25/138 (18%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTMPV 177
+ +HG+ N D + A ++ Y D S W
Sbjct: 23 VFIHGWPLNGD---AWQDQLKAVVDA-GYRGIAHDRRGHGHST---PVW----DGYDFD- 70
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGM-AGKHVKSRQIRHVTGLDPAQVLF 236
A ++ L+ D RDV LV S+G + G+H R +R L +
Sbjct: 71 --TFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGR-LRSAVLLSAIPPVM 125
Query: 237 TKSGPDERLDASHAEWVD 254
KS D+ D E D
Sbjct: 126 IKS--DKNPDGVPDEVFD 141
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 31.9 bits (73), Expect = 0.29
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 7/41 (17%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVG-MAGKHVKSR 85
A + HL + VG S G V +H + +
Sbjct: 80 AAVVAHL------GIQGAVHVGHSTGGGEVVRYMARHPEDK 114
Score = 29.9 bits (68), Expect = 1.1
Identities = 19/140 (13%), Positives = 38/140 (27%), Gaps = 29/140 (20%)
Query: 123 ILVHGFGDNSD--ESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTM 175
HG+ ++D ++ + L Y + D S W + M
Sbjct: 26 HFHHGWPLSADDWDAQLLFFL------AHGYRVVAHDRRGHGRSS---QVW----DGHDM 72
Query: 176 PVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVG-MAGKHVKSRQIRHVTGLDPAQV 234
H A + ++ + VG S G V +H + + + +
Sbjct: 73 D---HYADDVAAVVAHL--GIQGAVHVGHSTGGGEVVRYMARHPEDK-VAKAVLIAAVPP 126
Query: 235 LFTKSGPDERLDASHAEWVD 254
L ++ D
Sbjct: 127 LMVQT--PGNPGGLPKSVFD 144
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 31.1 bits (70), Expect = 0.48
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 21/118 (17%)
Query: 113 KHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDW------SPLAKVPW 166
++ T ++ GF D L YL + +++F D S
Sbjct: 29 ENVPFKNNTILIASGFARRMDH--FAGLAE--YLSTNGFHVFRYDSLHHVGLSS------ 78
Query: 167 YNSAARNTMPVGIHTAR-FIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQI 223
S TM G ++ L +++ L+ SL A V ++ +
Sbjct: 79 -GSIDEFTMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISDLELSFL 132
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 30.7 bits (69), Expect = 0.63
Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 23/114 (20%)
Query: 116 KPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVP------WY-N 168
+L+HG G DE+ F L T+ SP+ V ++
Sbjct: 59 VAGAPLFVLLHGTG--GDENQFFDFGA--RLLPQ----ATI-LSPVGDVSEHGAARFFRR 109
Query: 169 SAARNTMPVGIHTAR-----FIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKH 217
+ V + A FI + A V +GFS GA+++
Sbjct: 110 TGEGVYDMVDLERATGKMADFIKANRE--HYQAGPVIGLGFSNGANILANVLIE 161
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 30.8 bits (70), Expect = 0.64
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAHVV 75
TA I+ L D +VG S+GA +
Sbjct: 100 TAALIETL------DIAPARVVGVSMGAFIA 124
Score = 30.8 bits (70), Expect = 0.64
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAHVV 211
TA I+ L D +VG S+GA +
Sbjct: 100 TAALIETL------DIAPARVVGVSMGAFIA 124
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 30.7 bits (69), Expect = 0.64
Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 10/125 (8%)
Query: 118 SRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPV 177
+ +LVHG + L LE + + +D + R
Sbjct: 3 EGKHFVLVHGACHGG--WSWYKLK--PLLEAAGHKVTALDLAASGTDLRKIEELRTLYDY 58
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQVLFT 237
+ ++ L + V LVG SLG +G+A + + I L
Sbjct: 59 TLPLMELMESL-----SADEKVILVGHSLGGMNLGLAMEKYPQK-IYAAVFLAAFMPDSV 112
Query: 238 KSGPD 242
+
Sbjct: 113 HNSSF 117
>2opt_A Actii protein; helical protein, TETR family, APO-protein,
transcriptional R transcription; 2.05A {Streptomyces
coelicolor} PDB: 3b6a_A* 3b6c_A*
Length = 234
Score = 30.6 bits (69), Expect = 0.66
Identities = 12/93 (12%), Positives = 21/93 (22%), Gaps = 3/93 (3%)
Query: 158 WSPLAKVPWYNSAARNTMPVGIHTARFIDHL---MDSTGADARDVHLVGFSLGAHVVGMA 214
A + +P+G + ++ + S G G L V A
Sbjct: 87 RRMFLAHRDLARIAIDRVPLGPNGMVGMERTMNLLRSGGLHDELAAYGGDLLSTFVTAEA 146
Query: 215 GKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDA 247
+ G + L A
Sbjct: 147 LEQSSRNPGTEQGREQAGVFADQLHGYLKSLPA 179
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 30.3 bits (68), Expect = 0.79
Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 25/172 (14%)
Query: 117 PSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMP 176
+ +LVH + + + L LE + + V+ LA S
Sbjct: 2 ERKHHFVLVHNAYHGA--WIWYKLK--PLLESAGHRVTAVE---LA-----ASGIDPRPI 49
Query: 177 VGIHT-ARFIDHLMD--STGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLD--- 230
+ T + L++ + + +V LVGFS G + +A ++ I+ + L+
Sbjct: 50 QAVETVDEYSKPLIETLKSLPENEEVILVGFSFGGINIALAADIFPAK-IKVLVFLNAFL 108
Query: 231 ------PAQVLFTKSGPDERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFYP 276
P+ VL L + + + L Y
Sbjct: 109 PDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKFMKARLYQ 160
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 30.3 bits (68), Expect = 0.84
Identities = 27/217 (12%), Positives = 62/217 (28%), Gaps = 17/217 (7%)
Query: 116 KPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTM 175
++ +LVH + + ++ A + +N+ +D L S
Sbjct: 9 PFVKKHFVLVHAAFHGA--WCWYKIV--ALMRSSGHNVTALD---LG-----ASGINPKQ 56
Query: 176 PVGIHT-ARFIDHLMD--STGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPA 232
+ I + ++ LM+ ++ + LVG +LG + A + + I L
Sbjct: 57 ALQIPNFSDYLSPLMEFMASLPANEKIILVGHALGGLAISKAMETFPEK-ISVAVFLSGL 115
Query: 233 QVLFTKSGPDERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFYPNGGDWPQPGCTWDYAD 292
A A + + G ++ P +
Sbjct: 116 MPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGPKFLATNVYHLSPIEDL 175
Query: 293 RFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHRRAY 329
+++L + D + S +R +
Sbjct: 176 ALATALVRPLYLYLAEDISKEV-VLSSKRYGSVKRVF 211
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 30.8 bits (69), Expect = 0.88
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 14/113 (12%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVD---WSPLAKVPWYNSAARNTMPVGI 179
I+ G D+ + +L K D + TVD +K P +R V
Sbjct: 197 IVSAGL-DSLQTDMWRLFR--DHLAKHDIAMLTVDMPSVGYSSKYPLTEDYSRLHQAV-- 251
Query: 180 HTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPA 232
++ L D V L+GF G + + + + I+ L
Sbjct: 252 -----LNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEK-IKACVILGAP 298
Score = 27.7 bits (61), Expect = 7.2
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 49 IDHLIDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHV 90
++ L D V L+GF G + + + + I+
Sbjct: 252 LNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEK-IKAC 292
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 30.3 bits (68), Expect = 0.92
Identities = 22/169 (13%), Positives = 42/169 (24%), Gaps = 19/169 (11%)
Query: 117 PSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMP 176
++ +LVHG + + L LE + + VD S P
Sbjct: 8 KQQKHFVLVHGGC--LGAWIWYKLK--PLLESAGHKVTAVDLSAAGINPRRLDEIHTFRD 63
Query: 177 VGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHV--------TG 228
+ + V L+G S G +G+A + + V
Sbjct: 64 YSEPLMEVMASI-----PPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPN 118
Query: 229 LDPAQVL--FTKSGPDERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFY 275
+ + P + + S G + +
Sbjct: 119 HSLTYPFEKYNEKCPADMMLDSQFSTYGNPENPGMSMILGPQFMALKMF 167
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein,
BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics,
PSI-2; 1.72A {Homo sapiens}
Length = 194
Score = 29.3 bits (65), Expect = 1.5
Identities = 10/95 (10%), Positives = 24/95 (25%), Gaps = 17/95 (17%)
Query: 118 SRRTKILVHGFG-DNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMP 176
S ++V G G + + ++ + + + P +
Sbjct: 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNM-PDPITARESI------- 54
Query: 177 VGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVV 211
M++ ++G S GA
Sbjct: 55 --------WLPFMETELHCDEKTIIIGHSSGAIAA 81
Score = 29.3 bits (65), Expect = 1.7
Identities = 9/83 (10%), Positives = 21/83 (25%), Gaps = 2/83 (2%)
Query: 51 HLIDSTGADARDVHLVGFSLGAHVV--GMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAEC 108
+++ ++G S GA V + + + E S
Sbjct: 57 PFMETELHCDEKTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYFTR 116
Query: 109 KPVFKHFKPSRRTKILVHGFGDN 131
++ K + + D
Sbjct: 117 PWQWEKIKANCPYIVQFGSTDDP 139
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 29.7 bits (67), Expect = 1.6
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLGAHVVGM-AGKHVKSRQIRHVTGLDPAQVLFTKSG 240
+ ++ L + ++V LVGFS+G V + R I V KS
Sbjct: 85 HQLLEQL------ELQNVTLVGFSMGGGEVARYISTYGTDR-IEKVVFAGAVPPYLYKS- 136
Query: 241 PDERLDASHAEWVD 254
D A ++
Sbjct: 137 EDHPEGALDDATIE 150
Score = 28.9 bits (65), Expect = 2.2
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVGM-AGKHVKSR 85
+ ++ L + ++V LVGFS+G V + R
Sbjct: 85 HQLLEQL------ELQNVTLVGFSMGGGEVARYISTYGTDR 119
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 29.2 bits (66), Expect = 1.8
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 30/118 (25%)
Query: 123 ILVHGFGDNSD--ESLMFPLLRDAYLEKDDYNIFTVDW------SPLAKVPWYNSAARNT 174
+ +HG + + + PL Y + D S L V Y +
Sbjct: 30 LCIHGILEQGLAWQEVALPLAA------QGYRVVAPDLFGHGRSSHLEMVTSY------S 77
Query: 175 MPVGIH-TARFIDHLMDSTGADARDVHLVGFSLGAHVVGM-AGKHVKSRQIRHVTGLD 230
+ R I L + + LVG S+GA + A ++I+ + ++
Sbjct: 78 SLTFLAQIDRVIQEL------PDQPLLLVGHSMGAMLATAIASVR--PKKIKELILVE 127
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 29.3 bits (66), Expect = 1.8
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 7/37 (18%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVV-GMAGKH 81
A I L LVG SLGA A K+
Sbjct: 125 AGLIRTL------ARGHAILVGHSLGARNSVTAAAKY 155
Score = 29.3 bits (66), Expect = 1.8
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 7/37 (18%)
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKH 217
A I L LVG SLGA A K+
Sbjct: 125 AGLIRTL------ARGHAILVGHSLGARNSVTAAAKY 155
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 29.4 bits (66), Expect = 1.8
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 183 RFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDP 231
+I + D + + L GFS G HVV ++R LD
Sbjct: 95 DWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDH 143
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 28.8 bits (65), Expect = 2.5
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 6/33 (18%)
Query: 46 ARFIDHLIDSTGADARDVHLVGFSLGAHVVGMA 78
A + L D R +G S G V
Sbjct: 79 AALTEAL------DLRGAVHIGHSTGGGEVARY 105
Score = 28.4 bits (64), Expect = 3.7
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 25/99 (25%)
Query: 123 ILVHGFGDNSD--ESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTM 175
+ HG+ ++D ++ M L Y + D S P + M
Sbjct: 25 VFHHGWPLSADDWDNQMLFFLS------HGYRVIAHDRRGHGRSD---QPS----TGHDM 71
Query: 176 PVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMA 214
A + L ++ D R +G S G V
Sbjct: 72 D---TYAADVAALTEAL--DLRGAVHIGHSTGGGEVARY 105
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein
structure in midwest center for structural genomics,
MCSG; 2.01A {Staphylococcus epidermidis}
Length = 249
Score = 28.6 bits (63), Expect = 2.7
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 13/99 (13%)
Query: 123 ILVHGFG--DNSDESLMFPLLRD--------AYLEKDDYNIFTVDWSPLAKVPWYNSA-A 171
+ +HG+G + S+ ++ L A + + F S A P
Sbjct: 10 LFLHGYGGSERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFK 69
Query: 172 RNTMPVGIHTARFIDHLMDS--TGADARDVHLVGFSLGA 208
N A +I ++ + + + VG S+G
Sbjct: 70 DNKNGNFKENAYWIKEVLSQLKSQFGIQQFNFVGHSMGN 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 2.7
Identities = 29/208 (13%), Positives = 59/208 (28%), Gaps = 75/208 (36%)
Query: 74 VVGMA--GKHVKSRQIRHVTGRKNPKDPEVRSMTAECKPVFKHFKPSRRTKILVH--GFG 129
+ G+ GK + + S +CK FK +
Sbjct: 155 IDGVLGSGKTWVALDV-------------CLSYKVQCKMDFK-----------IFWLNLK 190
Query: 130 -DNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTA--RFID 186
NS E+++ L + L +W+ + + + + IH+
Sbjct: 191 NCNSPETVLEMLQK---L----LYQIDPNWTSRSDHS-------SNIKLRIHSIQAELRR 236
Query: 187 HLMDSTGADA----RDV----HLVGFSLGAHVVGMAGKHVKSRQI-----------RHVT 227
L + +V F+L ++ + +R H++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL------LTTRFKQVTDFLSAATTTHIS 290
Query: 228 GLDPAQVLFTKSGPDERLDASHAEWVDV 255
LD + T PDE +++D
Sbjct: 291 -LDHHSMTLT---PDEVKSLL-LKYLDC 313
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 28.5 bits (64), Expect = 3.1
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVD 157
I++HGF +S+E + + L + D
Sbjct: 31 IIIHGFTGHSEERHIVAV--QETLNEIGVATLRAD 63
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 28.6 bits (65), Expect = 3.1
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
TAR + ++ D R V G++LG H
Sbjct: 152 TARMQRAVGEAFDLDPRSVS--GYNLGEH 178
Score = 28.6 bits (65), Expect = 3.7
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
TAR + ++ D R V G++LG H
Sbjct: 152 TARMQRAVGEAFDLDPRSVS--GYNLGEH 178
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 28.5 bits (63), Expect = 3.2
Identities = 31/150 (20%), Positives = 48/150 (32%), Gaps = 27/150 (18%)
Query: 110 PVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLE------KDDYNIFTVDWSPLAK 163
PVF +RR + V G ++ LL Y + D+ V+ K
Sbjct: 29 PVFMMNMDARRCVLWVGGQTES--------LLSFDYFTNLAEELQGDWAFVQVEVPS-GK 79
Query: 164 VPW-YNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQ 222
+ A + V I L+ + +V L S G +V ++ +
Sbjct: 80 IGSGPQDHAHDAEDV----DDLIGILLRDHCMN--EVALFATSTGTQLVFELLENSAHKS 133
Query: 223 -----IRHVTGLDPAQVLFTKSGPDERLDA 247
I H DP LFT G R +
Sbjct: 134 SITRVILHGVVCDPENPLFTPEGCAARKEH 163
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 28.6 bits (65), Expect = 3.2
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
T RF + + RDV +G H
Sbjct: 148 TGRFRSFIAEELDVSVRDVQ--ALLMGGH 174
Score = 28.2 bits (64), Expect = 3.9
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
T RF + + RDV +G H
Sbjct: 148 TGRFRSFIAEELDVSVRDVQ--ALLMGGH 174
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 28.6 bits (64), Expect = 3.4
Identities = 18/108 (16%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYN-SAARNTMPVGIHT 181
+L+HG G ++ L + + A + + I +D + + +N + T
Sbjct: 42 LLLHGGGHSA---LSWAVFTAAIISRVQCRIVALDL------RSHGETKVKNPEDLSAET 92
Query: 182 -ARFIDHLMDSTGADA-RDVHLVGFSLGAHV-VGMAGKHVKSRQIRHV 226
A+ + +++++ D + L+G S+G + V A ++ +
Sbjct: 93 MAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLC 140
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 28.2 bits (64), Expect = 4.0
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
AR+ + G DV +G H
Sbjct: 149 AARYRTFIAMEAGVSVEDVQ--AMLMGGH 175
Score = 28.2 bits (64), Expect = 4.9
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
AR+ + G DV +G H
Sbjct: 149 AARYRTFIAMEAGVSVEDVQ--AMLMGGH 175
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 28.2 bits (64), Expect = 4.1
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
TARF + +D+ GF LG H
Sbjct: 157 TARFRTFIAQELNLSVKDIT--GFVLGGH 183
Score = 27.9 bits (63), Expect = 4.9
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
TARF + +D+ GF LG H
Sbjct: 157 TARFRTFIAQELNLSVKDIT--GFVLGGH 183
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 28.3 bits (64), Expect = 4.2
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+ RF ++ D+ RDV +G H
Sbjct: 162 SGRFRRYVADALSVSPRDVQ--ATVIGTH 188
Score = 27.9 bits (63), Expect = 5.1
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+ RF ++ D+ RDV +G H
Sbjct: 162 SGRFRRYVADALSVSPRDVQ--ATVIGTH 188
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET:
YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1
PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A*
3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Length = 215
Score = 28.2 bits (62), Expect = 4.3
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 14/119 (11%)
Query: 130 DNSDESLMFP-LLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHL 188
ESL+ P L R L +D + +S R+ + +++ L
Sbjct: 66 SGFAESLLDPALNRAEVLARD-LDKL-----------NGSSEWRSRITASPAVIDYVNRL 113
Query: 189 MDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDA 247
+ + LV ++ ++G V +R ++ G+DP + F +L
Sbjct: 114 EE-IRDNVDGPALVAHHYVRYLGDLSGGQVIARMMQRHYGVDPEALGFYHFEGIAKLKV 171
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 28.2 bits (64), Expect = 4.3
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+ARF +L + G DV +G H
Sbjct: 161 SARFRCNLSRALGVKPSDVS--AIVVGGH 187
Score = 27.9 bits (63), Expect = 5.1
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+ARF +L + G DV +G H
Sbjct: 161 SARFRCNLSRALGVKPSDVS--AIVVGGH 187
>3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG,
P structure initiative; 1.80A {Listeria innocua}
Length = 254
Score = 28.3 bits (62), Expect = 4.3
Identities = 29/201 (14%), Positives = 53/201 (26%), Gaps = 19/201 (9%)
Query: 123 ILVHGFGDN-SDESLMFPLLRDAYLEKDDYNIFTVD----------WSPLAKVPWYNSAA 171
IL+HG G N S M L + Y ++ TV+ + AK P
Sbjct: 7 ILIHGSGGNASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGF 66
Query: 172 RNTMPVGIHTARFIDHLMDSTGAD--ARDVHLVGFSLGAHVVGMA----GKHVKSRQIRH 225
++++ M+ + + VG S G + +R
Sbjct: 67 EQNQATPDDWSKWLKIAMEDLKSRYGFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRK 126
Query: 226 VTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFYPNGGDWPQPG 285
+ + + + + + + G+ +
Sbjct: 127 LVAIG-SPFNDLDPNDNGMDLSFKKLPNSTPQMDYFIKNQTEVSPDLEVLAIAGELSEDN 185
Query: 286 CTWDYADRFSSSLGHRDFYPN 306
D SSL R F P
Sbjct: 186 -PTDGIVPTISSLATRLFMPG 205
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 28.3 bits (64), Expect = 4.4
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+AR ++ G + V+ LG H
Sbjct: 146 SARMAYYISQKLGVSFKSVN--AIVLGMH 172
Score = 27.9 bits (63), Expect = 5.4
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+AR ++ G + V+ LG H
Sbjct: 146 SARMAYYISQKLGVSFKSVN--AIVLGMH 172
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 28.2 bits (64), Expect = 4.4
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
ARF + G +D++ LG H
Sbjct: 148 AARFRSFIAMELGVSMQDIN--ACVLGGH 174
Score = 27.9 bits (63), Expect = 5.3
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
ARF + G +D++ LG H
Sbjct: 148 AARFRSFIAMELGVSMQDIN--ACVLGGH 174
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 28.2 bits (64), Expect = 4.5
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+ RF L + G D ++VH G+ +G H
Sbjct: 153 SIRFRYLLSEKLGVDVKNVH--GYIIGEH 179
Score = 27.8 bits (63), Expect = 5.5
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+ RF L + G D ++VH G+ +G H
Sbjct: 153 SIRFRYLLSEKLGVDVKNVH--GYIIGEH 179
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 28.2 bits (64), Expect = 4.6
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
++RF + G +A DV +G H
Sbjct: 151 SSRFRTFIAQHFGVNASDVS--ANVIGGH 177
Score = 27.8 bits (63), Expect = 5.5
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
++RF + G +A DV +G H
Sbjct: 151 SSRFRTFIAQHFGVNASDVS--ANVIGGH 177
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 28.3 bits (64), Expect = 4.7
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+AR + TG + ++VH + G H
Sbjct: 154 SARLRFLIAQQTGVNVKNVH--AYIAGEH 180
Score = 27.9 bits (63), Expect = 5.7
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+AR + TG + ++VH + G H
Sbjct: 154 SARLRFLIAQQTGVNVKNVH--AYIAGEH 180
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 28.2 bits (64), Expect = 4.8
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
TARF + + DAR VH + +G H
Sbjct: 155 TARFRQSIAEMVNVDARSVH--AYIMGEH 181
Score = 27.9 bits (63), Expect = 5.8
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
TARF + + DAR VH + +G H
Sbjct: 155 TARFRQSIAEMVNVDARSVH--AYIMGEH 181
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 28.2 bits (64), Expect = 4.8
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+ARF L + DV F LG H
Sbjct: 154 SARFRYFLSEEFNVSVEDVT--VFVLGGH 180
Score = 27.9 bits (63), Expect = 6.2
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+ARF L + DV F LG H
Sbjct: 154 SARFRYFLSEEFNVSVEDVT--VFVLGGH 180
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 28.2 bits (64), Expect = 4.8
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+ARF + G D H G+ LG H
Sbjct: 144 SARFRHLMAQHAGVDGTHAH--GYVLGEH 170
Score = 27.8 bits (63), Expect = 5.8
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+ARF + G D H G+ LG H
Sbjct: 144 SARFRHLMAQHAGVDGTHAH--GYVLGEH 170
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 27.9 bits (63), Expect = 5.0
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
T+R ++ RDV+ +GAH
Sbjct: 156 TSRLKYYISQKLNVCPRDVN--AHIVGAH 182
Score = 27.9 bits (63), Expect = 6.0
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
T+R ++ RDV+ +GAH
Sbjct: 156 TSRLKYYISQKLNVCPRDVN--AHIVGAH 182
>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein;
1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X*
Length = 375
Score = 28.0 bits (61), Expect = 5.3
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 267 SSLGHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWPQPG 314
S+ + + D + ++ G Y GG P PG
Sbjct: 4 GSMPPKRRLVDDADAMEDQDLYEPPASLPKLPGKFLQYTVGGSDPHPG 51
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 27.8 bits (63), Expect = 5.5
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
++R L D R V + +G H
Sbjct: 151 SSRLRVALGKQFNVDPRSVD--AYIMGEH 177
Score = 27.5 bits (62), Expect = 6.7
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
++R L D R V + +G H
Sbjct: 151 SSRLRVALGKQFNVDPRSVD--AYIMGEH 177
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 27.9 bits (63), Expect = 5.6
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+ARF L D + V + +G H
Sbjct: 152 SARFRTFLADELNVSVQQVQ--AYVMGGH 178
Score = 27.5 bits (62), Expect = 6.7
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+ARF L D + V + +G H
Sbjct: 152 SARFRTFLADELNVSVQQVQ--AYVMGGH 178
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase;
non-canonical TIM-barrel, prenyltransferase, archaeal
lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus
fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Length = 234
Score = 27.8 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 215 GKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSGG 261
G H++ R+ RH+T LDP ++ DE + A D V SG
Sbjct: 1 GSHMRWRKWRHITKLDPD-----RTNTDEIIKAVADSGTDAVMISGT 42
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 27.9 bits (63), Expect = 5.8
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+ARF L + GA ++V +G H
Sbjct: 152 SARFRFMLSEYFGAAPQNVC--AHIIGEH 178
Score = 27.5 bits (62), Expect = 7.0
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+ARF L + GA ++V +G H
Sbjct: 152 SARFRFMLSEYFGAAPQNVC--AHIIGEH 178
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 27.8 bits (63), Expect = 5.8
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
TARF L + + VH + LG H
Sbjct: 146 TARFRALLAEYLRVAPQSVH--AYVLGEH 172
Score = 27.5 bits (62), Expect = 7.0
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
TARF L + + VH + LG H
Sbjct: 146 TARFRALLAEYLRVAPQSVH--AYVLGEH 172
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 27.9 bits (63), Expect = 5.9
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+ RF + G +V +G H
Sbjct: 152 SLRFKVAIAKFFGVHIDEVR--TRIIGEH 178
Score = 27.5 bits (62), Expect = 7.2
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+ RF + G +V +G H
Sbjct: 152 SLRFKVAIAKFFGVHIDEVR--TRIIGEH 178
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 27.8 bits (63), Expect = 6.0
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+ARF L ++ R V +G H
Sbjct: 153 SARFRLLLSEAFDVAPRSVD--AQIIGEH 179
Score = 27.5 bits (62), Expect = 7.3
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+ARF L ++ R V +G H
Sbjct: 153 SARFRLLLSEAFDVAPRSVD--AQIIGEH 179
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 27.8 bits (63), Expect = 6.1
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
TARF L + ++VH + +G H
Sbjct: 153 TARFRFLLGEYFSVAPQNVH--AYIIGEH 179
Score = 27.5 bits (62), Expect = 7.4
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
TARF L + ++VH + +G H
Sbjct: 153 TARFRFLLGEYFSVAPQNVH--AYIIGEH 179
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 27.6 bits (62), Expect = 6.2
Identities = 3/29 (10%), Positives = 8/29 (27%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+ R + + A + +G
Sbjct: 155 SQRLQYIITNVLKAQTSGKE--VWVIGEQ 181
Score = 27.6 bits (62), Expect = 7.3
Identities = 3/29 (10%), Positives = 8/29 (27%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+ R + + A + +G
Sbjct: 155 SQRLQYIITNVLKAQTSGKE--VWVIGEQ 181
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 27.5 bits (62), Expect = 6.4
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 223 IRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVV 256
I H G DPA V F + + + A DVV
Sbjct: 163 ISHSEGADPAAVAF------DAVAHALARNKDVV 190
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 27.5 bits (61), Expect = 6.7
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 47 RFIDHLIDSTGADARDVHLVGFSLGAHVVGMAGKHVKSR 85
+ D + + GFS+G H+V + + +R
Sbjct: 110 NLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATR 148
Score = 27.1 bits (60), Expect = 8.8
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 183 RFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSR 221
+ D + + GFS+G H+V + + +R
Sbjct: 110 NLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATR 148
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 27.4 bits (61), Expect = 6.7
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 31/141 (21%)
Query: 123 ILVHGFGDNSD--ESLMFPLLRDAYLEKDDYNIFTVDW-----SPLAKVPWYNSAARNTM 175
+L+HG+ + E LL Y + T D S
Sbjct: 27 VLIHGYPLDGHSWERQTRELL------AQGYRVITYDRRGFGGSS---KVN----TGYDY 73
Query: 176 P-VGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGM-AGKHVKSRQIRHVTGLDPAQ 233
++ L D RDV LVGFS+G + ++ R + + L +
Sbjct: 74 DTFAADLHTVLETL------DLRDVVLVGFSMGTGELARYVARYGHER-VAKLAFLASLE 126
Query: 234 VLFTKSGPDERLDASHAEWVD 254
+ D+ + E D
Sbjct: 127 PFLVQR--DDNPEGVPQEVFD 145
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 27.5 bits (62), Expect = 6.8
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+ARF L + A ++V G LG H
Sbjct: 149 SARFRYVLSEEFDAPVQNVE--GTILGEH 175
Score = 27.5 bits (62), Expect = 8.3
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+ARF L + A ++V G LG H
Sbjct: 149 SARFRYVLSEEFDAPVQNVE--GTILGEH 175
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 27.5 bits (62), Expect = 7.1
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
TAR + G R VH + +G H
Sbjct: 146 TARLRTLIAQHCGFSPRSVH--VYVIGEH 172
Score = 27.5 bits (62), Expect = 8.6
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
TAR + G R VH + +G H
Sbjct: 146 TARLRTLIAQHCGFSPRSVH--VYVIGEH 172
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 27.3 bits (61), Expect = 7.3
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 52 LIDSTGADARDVHLVGFSLGAHVV 75
+ID+ G A + G S GA +
Sbjct: 81 IIDAAGGAA---FVFGMSSGAGLS 101
Score = 27.3 bits (61), Expect = 8.5
Identities = 7/30 (23%), Positives = 9/30 (30%), Gaps = 7/30 (23%)
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLGAHVV 211
A ID + G S GA +
Sbjct: 79 AAIIDAA-------GGAAFVFGMSSGAGLS 101
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 27.5 bits (60), Expect = 7.4
Identities = 21/157 (13%), Positives = 38/157 (24%), Gaps = 17/157 (10%)
Query: 64 HLVGFSLGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAECKPVFKHFKPSRRTKI 123
+V + G+ + Q VR+ I
Sbjct: 103 FVVELEVLDGHDPEPGRLLCQAQHERHFLPPGVWRQSVRAGRVRATLFLPPGPGPFPGII 162
Query: 124 LVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTAR 183
+ G G E R + L + + + YN I
Sbjct: 163 DIFGIGGGLLEY------RASLLAGHGFATLALAY--------YNFEDLPNNMDNISLEY 208
Query: 184 F---IDHLMDSTGADARDVHLVGFSLGAHVVGMAGKH 217
F + +++ + L+G SLGA +
Sbjct: 209 FEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASF 245
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 27.6 bits (62), Expect = 7.4
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 181 TARFIDHLMDSTGADARDVHLVGFSLGAH 209
+ARF + + G + V G+ +G H
Sbjct: 168 SARFRYLMGERLGVHSCLVI--GWVIGQH 194
Score = 27.3 bits (61), Expect = 8.9
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 45 TARFIDHLIDSTGADARDVHLVGFSLGAH 73
+ARF + + G + V G+ +G H
Sbjct: 168 SARFRYLMGERLGVHSCLVI--GWVIGQH 194
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 27.4 bits (61), Expect = 7.8
Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 26/134 (19%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVD-----WSPLAKVPWYNSAARNTMPV 177
+LVHG + D +L +D+NI VD SP M
Sbjct: 20 VLVHGLFGSLD---NLGVLARDL--VNDHNIIQVDVRNHGLSP-----REPVMNYPAM-- 67
Query: 178 GIHTARFIDHLMDSTGADARDVHLVGFSLGAHVV-GMAGKHVKSRQIRHVTGLDPAQVLF 236
A+ + +D+ D +G S+G V + +I + +D A V +
Sbjct: 68 ----AQDLVDTLDALQID--KATFIGHSMGGKAVMALTALA--PDRIDKLVAIDIAPVDY 119
Query: 237 TKSGPDERLDASHA 250
DE A +A
Sbjct: 120 HVRRHDEIFAAINA 133
>3aja_A Putative uncharacterized protein; alpha-beta hydrolase, serine
esterase, cutinase, lipase, HYD; 2.90A {Mycobacterium
smegmatis}
Length = 302
Score = 27.6 bits (60), Expect = 7.9
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 4/96 (4%)
Query: 201 LVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSG 260
+ GFS GA + G + + + L L D R + V
Sbjct: 137 IAGFSQGAVIAGDIASDIGNGRGPVDEDLVLGVTLI----ADGRRQMGVGQDVGPNPAGQ 192
Query: 261 GYLGFSSSLGHRDFYPNGGDWPQPGCTWDYADRFSS 296
G + P+PG +R +
Sbjct: 193 GAEITLHEVPALSALGLTMTGPRPGGFGALDNRTNQ 228
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 27.1 bits (61), Expect = 8.6
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 223 IRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVV 256
I+ G D A + + + + A A D++
Sbjct: 161 IQGPEGTDSAALAY------DAVQAMKARGYDLL 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.447
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,328,291
Number of extensions: 399500
Number of successful extensions: 1314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1210
Number of HSP's successfully gapped: 246
Length of query: 376
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 281
Effective length of database: 4,049,298
Effective search space: 1137852738
Effective search space used: 1137852738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)