RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6793
(376 letters)
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 338
Score = 214 bits (545), Expect = 2e-67
Identities = 90/287 (31%), Positives = 131/287 (45%), Gaps = 25/287 (8%)
Query: 93 RKNPKDPEVRSMTAECKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYN 152
+NP + + S T F +F+ R+T+ +VHGF D ++ + + + + N
Sbjct: 44 NENPNNYQKISATEPDTIKFSNFQLDRKTRFIVHGFIDKGEDGWLLDM-CKKMFQVEKVN 102
Query: 153 IFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVG 212
VDW ++ Y A+ NT VG A + L G +VHL+G SLGAHVVG
Sbjct: 103 CICVDWRRGSRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVG 161
Query: 213 MAGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSGGYL------GFS 266
AG+ ++ + +TGLDPA+ F + RLD S A +VDV+HT + G S
Sbjct: 162 EAGRRLE-GHVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMS 220
Query: 267 SSLGHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHR 326
+GH DF+PNGG PGC ++ D C+H
Sbjct: 221 QKVGHLDFFPNGG-KEMPGC-------------QKNILSTIVDINGIWEGTQNFVACNHL 266
Query: 327 RAYYYYAEAIRNHGKGFTAVSCPSYEYFEKGEC-KAMDNSTLPMGLN 372
R+Y YYA +I N GF C SYE F++ +C + MG
Sbjct: 267 RSYKYYASSILNP-DGFLGYPCSSYEKFQQNDCFPCPEEGCPKMGHY 312
Score = 84.0 bits (207), Expect = 9e-19
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 7 PAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLV 66
+ + N VDW ++ Y A+ NT VG A + L G +VHL+
Sbjct: 93 KKMFQVEKVNCICVDWRRGSRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLI 151
Query: 67 GFSLGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAECKPVFKHFKPSRR 120
G SLGAHVVG AG+ ++ GR DP +P F+ R
Sbjct: 152 GHSLGAHVVGEAGRRLEGH-----VGRITGLDP--------AEPCFQGLPEEVR 192
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 337
Score = 205 bits (523), Expect = 4e-64
Identities = 85/287 (29%), Positives = 128/287 (44%), Gaps = 26/287 (9%)
Query: 93 RKNPKDPEVRSMTAECKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYN 152
KNP + + + +F+ ++T+ ++HGF D +E+ + + ++ N
Sbjct: 44 NKNPNNFQTLLPSDPSTIGASNFQTDKKTRFIIHGFIDKGEEN-WLLDMCKNMFKVEEVN 102
Query: 153 IFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVG 212
VDW ++ Y AA N VG A+ + L + V L+G SLGAHV G
Sbjct: 103 CICVDWKKGSQ-TSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAG 161
Query: 213 MAGKHVKSRQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSGGYL------GFS 266
AG + +TGLDP + F + + RLD + A++VDV+HT L G S
Sbjct: 162 EAGSRTP--GLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTS 219
Query: 267 SSLGHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHR 326
+GH DF+PNGG PGC + S + + D+ C+H
Sbjct: 220 QQMGHLDFFPNGG-EEMPGCKKNA---LSQIVDLDGIWEGTRDFV----------ACNHL 265
Query: 327 RAYYYYAEAIRNHGKGFTAVSCPSYEYFEKGEC-KAMDNSTLPMGLN 372
R+Y YY+E+I N GF + C SY FE +C D MG
Sbjct: 266 RSYKYYSESILNP-DGFASYPCASYRAFESNKCFPCPDQGCPQMGHY 311
Score = 81.0 bits (199), Expect = 9e-18
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 8 AYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVG 67
+ ++ N VDW ++ Y AA N VG A+ + L + V L+G
Sbjct: 94 NMFKVEEVNCICVDWKKGSQ-TSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIG 152
Query: 68 FSLGAHVVGMAGKHVKSRQIRHVTGRKNPKDP 99
SLGAHV G AG + +TG +
Sbjct: 153 HSLGAHVAGEAGSRTP--GLGRITGLDPVEAS 182
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 44.7 bits (105), Expect = 8e-06
Identities = 20/145 (13%), Positives = 38/145 (26%), Gaps = 14/145 (9%)
Query: 117 PSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMP 176
+ +LV G G +S + + Y + P +
Sbjct: 29 SVSKPILLVPGTGTTGPQSFDSNWIP--LSTQLGYTPCWISPPPFMLNDTQVNTEY---- 82
Query: 177 VGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQ--IRHVTGLDPAQV 234
I L +G + + ++ +S G V S + + + P
Sbjct: 83 ----MVNAITALYAGSGNN--KLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 136
Query: 235 LFTKSGPDERLDASHAEWVDVVHTS 259
+GP + L S S
Sbjct: 137 GTVLAGPLDALAVSAPSVWQQTTGS 161
Score = 26.6 bits (58), Expect = 4.8
Identities = 8/74 (10%), Positives = 17/74 (22%), Gaps = 10/74 (13%)
Query: 8 AYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVG 67
+ Y + P + I L +G + + ++
Sbjct: 54 PLSTQLGYTPCWISPPPFMLNDTQVNTEY--------MVNAITALYAGSGNN--KLPVLT 103
Query: 68 FSLGAHVVGMAGKH 81
+S G V
Sbjct: 104 WSQGGLVAQWGLTF 117
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 279
Score = 40.3 bits (94), Expect = 2e-04
Identities = 13/108 (12%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 123 ILVHGFGDN-SDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHT 181
++ HG GD+ + M + + + ++ +++ + NS N
Sbjct: 9 VIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVN----SQ 64
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGL 229
+ ++ + + +GFS G + + S + ++ +
Sbjct: 65 VTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISV 112
>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId:
42739]}
Length = 319
Score = 38.3 bits (88), Expect = 0.001
Identities = 31/261 (11%), Positives = 64/261 (24%), Gaps = 21/261 (8%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRD--AYLEKDDYNIFTVDWSPLAKVPWYNSAA 171
+ +R ILVHG + + + L+ ++ + S N
Sbjct: 3 TYAATRYPVILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPNGRG 62
Query: 172 RNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDP 231
++ ++ +TGA V+L+G S G T +
Sbjct: 63 E-------QLLAYVKQVLAATGAT--KVNLIGHSQGGLTSRYVAAVAPQLVASVTT-IGT 112
Query: 232 AQVLFTKSGPDERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFYPNGGDWPQPGCTWDYA 291
+ + + + + + F + + T
Sbjct: 113 PHRGSEFADFVQDVLKTDPTGLSSTVIAAFVNVFGTLVSSSHNTDQDALAALRTLTTAQT 172
Query: 292 DRFSSSLGHRDFYPNGGDW-PQPGCTWDYAAVCSHRRAYYYY--AEAIRNHGKGFTAVSC 348
++ + +P+ G P T + Y AI+
Sbjct: 173 ATYNRN------FPSAGLGAPGSCQTGAATETVGGSQHLLYSWGGTAIQPTSTVLGVTGA 226
Query: 349 PSYEYFEKGECKAMDNSTLPM 369
D STL +
Sbjct: 227 TDTSTGTLDVANVTDPSTLAL 247
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 36.4 bits (83), Expect = 0.003
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 8/121 (6%)
Query: 116 KPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTM 175
T ++ GF D L YL + +++F D S TM
Sbjct: 29 PFKNNTILIASGFARRMDH--FAGLAE--YLSTNGFHVFRYDS-LHHVGLSSGSIDEFTM 83
Query: 176 PVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGM-AGKHVKSRQIRHVTGLDPAQV 234
G ++ + H + + G ++ L+ SL A V S I V ++
Sbjct: 84 TTGKNSLCTVYHWLQTKGTQ--NIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRDT 141
Query: 235 L 235
L
Sbjct: 142 L 142
Score = 28.4 bits (62), Expect = 1.4
Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 11/158 (6%)
Query: 9 YLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVGF 68
YL + +++F D S TM G ++ + H + + G ++ L+
Sbjct: 54 YLSTNGFHVFRYDS-LHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKGTQ--NIGLIAA 110
Query: 69 SLGAHVVGMAGKHVKSRQIRHVTGRKNPKDPEVRSMTAECKPVFKHFKPSRRTKILVHGF 128
SL A V ++ + G N +D + S L +
Sbjct: 111 SLSARVAYEVISDLELSFLITAVGVVNLRD--------TLEKALGFDYLSLPIDELPNDL 162
Query: 129 GDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPW 166
+ +RD + D T+D VP
Sbjct: 163 DFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPL 200
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 36.3 bits (83), Expect = 0.004
Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 13/106 (12%)
Query: 123 ILVHGFGDNSDESLMFPLLRDA-YLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHT 181
+L HG + + L +D ++ + S L G
Sbjct: 11 VLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQLDTSEVR----------GEQL 60
Query: 182 ARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVT 227
+ ++ ++ +G V+L+G S G + +
Sbjct: 61 LQQVEEIVALSGQP--KVNLIGHSHGGPTIRYVAAVRPDLIASATS 104
Score = 27.8 bits (61), Expect = 2.1
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 12/84 (14%)
Query: 8 AYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLIDSTGADARDVHLVG 67
+ L +D ++ + S L G + ++ ++ +G V+L+G
Sbjct: 33 SALRRDGAQVYVTEVSQLDTSEVR----------GEQLLQQVEEIVALSGQP--KVNLIG 80
Query: 68 FSLGAHVVGMAGKHVKSRQIRHVT 91
S G + +
Sbjct: 81 HSHGGPTIRYVAAVRPDLIASATS 104
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 35.8 bits (81), Expect = 0.006
Identities = 33/234 (14%), Positives = 66/234 (28%), Gaps = 28/234 (11%)
Query: 123 ILVHGFGDNSDE-SLMFPLLRDA-YLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIH 180
L HG ++ P A L Y+++ + + +++
Sbjct: 62 FLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAF 121
Query: 181 T---------ARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDP 231
+ ID ++ TG D +H VG S G + +A R T
Sbjct: 122 SFDEMAKYDLPATIDFILKKTGQD--KLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYAL 179
Query: 232 AQVLFTKSGPDERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFYPNGGDWPQPGCTWDYA 291
A V K + E + F G++ FYP+
Sbjct: 180 APVATVK----------YTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSR 229
Query: 292 DRFSSSLGHRDFYPNGGDWPQP-----GCTWDYAAVCSHRRAYYYYAEAIRNHG 340
+ + F G D + + + ++++A+++
Sbjct: 230 ETVDLLCSNALFIICGFDTMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGK 283
>d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]}
Length = 179
Score = 30.6 bits (68), Expect = 0.18
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 13/111 (11%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTA 182
++VHG G S + YL ++ + + G +
Sbjct: 6 VMVHGIGGASFN--FAGIKS--YLVSQGWSRDKLYA------VDFWDKTGTNYNNGPVLS 55
Query: 183 RFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGK-HVKSRQIRHVTGLDPA 232
RF+ ++D TGA V +V S+G K ++ +V L A
Sbjct: 56 RFVQKVLDETGAK--KVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGA 104
>d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis
[TaxId: 1423]}
Length = 186
Score = 30.0 bits (66), Expect = 0.34
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 17/107 (15%)
Query: 120 RTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGI 179
+ ++HG+ +S L + L D ++ P+
Sbjct: 2 KQVYIIHGYRASSTNHWFPWLKK--RLLADGVQADILNM---------------PNPLQP 44
Query: 180 HTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHV 226
++D L + +LV SLG + +H++ R
Sbjct: 45 RLEDWLDTLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQLRAALGG 91
>d1auna_ b.25.1.1 (A:) Pathogenesis-related protein 5d {Common
tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 208
Score = 29.6 bits (66), Expect = 0.43
Identities = 23/125 (18%), Positives = 30/125 (24%), Gaps = 6/125 (4%)
Query: 252 WVDVVHTSGGY---LGFSSSLGHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGG 308
W GG G S W + C +D A R G
Sbjct: 15 WAAATPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRGWCQTGDCGGVLECK 74
Query: 309 DWPQPGCT-WDYAAVCSHRRAYYY-YAEAIRNHGKGFTAVSCPSYEYFEKGECKAMDNST 366
W +P T +YA ++ N F + C A N
Sbjct: 75 GWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGKCHGIQ-CTANINGE 133
Query: 367 LPMGL 371
P L
Sbjct: 134 CPGSL 138
>d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374
{Mesorhizobium loti [TaxId: 381]}
Length = 209
Score = 29.2 bits (64), Expect = 0.56
Identities = 18/105 (17%), Positives = 28/105 (26%), Gaps = 7/105 (6%)
Query: 116 KPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTM 175
K SR L+HG G + + PL R +
Sbjct: 20 KESRECLFLLHGSGVDETT--LVPLARRIAPTATLVAARGRIPQEDGFRWFERIDPTRFE 77
Query: 176 PVGIHTA-----RFIDHLMDSTGADARDVHLVGFSLGAHVVGMAG 215
I F + G + +G+S GA++V
Sbjct: 78 QKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLM 122
>d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens
[TaxId: 294]}
Length = 218
Score = 29.2 bits (64), Expect = 0.58
Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 14/125 (11%)
Query: 116 KPSRRTKILVHGFGDN-SDESLMFPLLRDAYLE-------------KDDYNIFTVDWSPL 161
KP+ I +HG G + D + L+++ L + W +
Sbjct: 11 KPADACVIWLHGLGADRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDI 70
Query: 162 AKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSR 221
+ S + + V + TG DA + L GFS G VV
Sbjct: 71 KAMSPARSISLEELEVSAKMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQG 130
Query: 222 QIRHV 226
+ V
Sbjct: 131 PLGGV 135
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
flexneri [TaxId: 623]}
Length = 255
Score = 29.2 bits (65), Expect = 0.72
Identities = 25/219 (11%), Positives = 54/219 (24%), Gaps = 38/219 (17%)
Query: 36 RNTMPVGIHTAR----FIDHLIDSTGADARD-VHLVGFSLGAHVVGMAGKHVKSRQIRHV 90
VG R +++L + + V ++G G + +
Sbjct: 48 EPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAKL 107
Query: 91 TGRKNPK-------DPEVRSMTAECKPVFKHFKPSRRTKILVHGFGDNSDESLMFPLLRD 143
G + +P +R+ + + I + G G +
Sbjct: 108 KGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDIALVGIGSPAIRDGANW---H 164
Query: 144 AYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVG 203
A+ ++ + AR +RF D + + +
Sbjct: 165 AFYGGEESDDL---------------NARQVAGDIC--SRFFDIHGAMVETNMSE-KTLS 206
Query: 204 FSLGA-----HVVGMAGKHVKSRQIRHVTGLDPAQVLFT 237
+ + +G+A K I L T
Sbjct: 207 IEMNKLKQARYSIGIAMSEEKYSGIIGALRGKYINCLVT 245
>d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 28.5 bits (62), Expect = 1.1
Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 13/115 (11%)
Query: 118 SRRTKILVHGFGDNSDE-SLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMP 176
S + I+VHG D+S + + + + + +D + P
Sbjct: 1 SYKPVIVVHGLFDSSYSFRHLLEYINETH---PGTVVTVLD---------LFDGRESLRP 48
Query: 177 VGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDP 231
+ F + ++ + VHL+ +S G V + + L
Sbjct: 49 LWEQVQGFREAVVPIMAKAPQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal
domains {Human (Homo sapiens), mitochondrial [TaxId:
9606]}
Length = 204
Score = 28.1 bits (62), Expect = 1.4
Identities = 5/47 (10%), Positives = 12/47 (25%)
Query: 293 RFSSSLGHRDFYPNGGDWPQPGCTWDYAAVCSHRRAYYYYAEAIRNH 339
RF + + + A S R + + + +
Sbjct: 24 RFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGN 70
>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 242
Score = 27.9 bits (60), Expect = 2.1
Identities = 20/112 (17%), Positives = 31/112 (27%), Gaps = 8/112 (7%)
Query: 114 HFKPSRRTKILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARN 173
F+ R +L+HGF NS + + L R +LE Y +
Sbjct: 6 FFEAGERAVLLLHGFTGNSAD--VRMLGR--FLESKGYTCHAPIYKG----HGVPPEELV 57
Query: 174 TMPVGIHTARFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRH 225
++ + + G SLG G V I
Sbjct: 58 HTGPDDWWQDVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVT 109
>d1yu0a2 d.169.1.8 (A:171-380) Major tropism determinant (Mtd),
C-terminal domain {Bordetella phage bpp-1 [TaxId:
194699]}
Length = 210
Score = 27.1 bits (59), Expect = 2.9
Identities = 13/87 (14%), Positives = 26/87 (29%)
Query: 257 HTSGGYLGFSSSLGHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWPQPGCT 316
+ + F+S G W + A ++++ G R G
Sbjct: 115 GATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGA 174
Query: 317 WDYAAVCSHRRAYYYYAEAIRNHGKGF 343
W+ ++ R A +Y + G
Sbjct: 175 WNGTSLSGSRAALWYSGPSFSFAFFGA 201
>d1rqwa_ b.25.1.1 (A:) Thaumatin {Ketemfe (Thaumatococcus daniellii)
[TaxId: 4621]}
Length = 207
Score = 26.9 bits (59), Expect = 3.1
Identities = 10/67 (14%), Positives = 21/67 (31%)
Query: 264 GFSSSLGHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRDFYPNGGDWPQPGCTWDYAAVC 323
G S ++ G W + C +D + G + +P T ++
Sbjct: 34 GESWTINVEPGTKGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLN 93
Query: 324 SHRRAYY 330
+ + Y
Sbjct: 94 QYGKDYI 100
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 26.6 bits (58), Expect = 4.5
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 10/46 (21%)
Query: 221 RQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSGGYLGFS 266
R+ RH+T LDP ++ DE + A D V + +
Sbjct: 4 RKWRHITKLDPD-----RTNTDEIIKAVADSGTDAV-----MISGT 39
>d2h3ka1 b.1.28.1 (A:1-144) Iron-regulated surface determinant
protein H, IsdH {Staphylococcus aureus [TaxId: 1280]}
Length = 144
Score = 25.8 bits (56), Expect = 5.3
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 220 SRQIRH-VTGLDPAQVLFTKSGPDERLDASHAE 251
Q H + DPA V +TK + LD + A
Sbjct: 37 ETQYYHFFSIKDPADVYYTKKKAEVELDINTAS 69
>d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2)
{Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 258
Score = 26.4 bits (56), Expect = 5.7
Identities = 17/212 (8%), Positives = 43/212 (20%), Gaps = 10/212 (4%)
Query: 123 ILVHGFGDNSDESLMFPLLRDAYLEKDDYNIFTVDWSPLAKVPWYNSAARNTMPVGIHTA 182
+LVHG + L LE + + +D + R +
Sbjct: 6 VLVHGACHGG--WSWYKLKP--LLEAAGHKVTALDL------AASGTDLRKIEELRTLYD 55
Query: 183 RFIDHLMDSTGADARDVHLVGFSLGAHVVGMAGKHVKSRQIRHVTGLDPAQVLFTKSGPD 242
+ + A + ++ + ++I L +
Sbjct: 56 YTLPLMELMESLSADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSF 115
Query: 243 ERLDASHAEWVDVVHTSGGYLGFSSSLGHRDFYPNGGDWPQPGCTWDYADRFSSSLGHRD 302
+ + + S + + + +
Sbjct: 116 VLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGPKFLAHKLYQLCSPEDLALASSLVR 175
Query: 303 FYPNGGDWPQPGCTWDYAAVCSHRRAYYYYAE 334
+ + S +R Y E
Sbjct: 176 PSSLFMEDLSKAKYFTDERFGSVKRVYIVCTE 207
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 25.8 bits (56), Expect = 7.6
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 10/46 (21%)
Query: 221 RQIRHVTGLDPAQVLFTKSGPDERLDASHAEWVDVVHTSGGYLGFS 266
+ +HV LDP K PDE+L+ D V +G S
Sbjct: 6 TEWKHVFKLDPN-----KDLPDEQLEILCESGTDAV-----IIGGS 41
>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL
{Lactococcus lactis [TaxId: 1358]}
Length = 468
Score = 26.4 bits (57), Expect = 7.9
Identities = 10/60 (16%), Positives = 14/60 (23%)
Query: 303 FYPNGGDWPQPGCTWDYAAVCSHRRAYYYYAEAIRNHGKGFTAVSCPSYEYFEKGECKAM 362
F P + + SH RA Y + G Y Y +
Sbjct: 174 FPPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVR 233
>d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 229
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/141 (12%), Positives = 38/141 (26%), Gaps = 14/141 (9%)
Query: 98 DPEVRSMTAECKPVFKHFKPSRRTKILVHGFGDNSD------ESLMFPLLRDAYLEKDDY 151
DPE M+ + + + I +HG GD + ++
Sbjct: 2 DPE--FMSTPLPAIVPAARKATAAVIFLHGLGDTGHGWAEAFAGIRSSHIKYICPHAPVR 59
Query: 152 ------NIFTVDWSPLAKVPWYNSAARNTMPVGIHTARFIDHLMDSTGADARDVHLVGFS 205
N+ W + + + + + + + G + + L GFS
Sbjct: 60 PVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSNRIILGGFS 119
Query: 206 LGAHVVGMAGKHVKSRQIRHV 226
G + + +
Sbjct: 120 QGGALSLYTALTTQQKLAGVT 140
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.447
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,567,849
Number of extensions: 76959
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 61
Length of query: 376
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,213,086
Effective search space: 350581854
Effective search space used: 350581854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)