BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6794
         (165 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QUF|A Chain A, Crystal Structure Of Transcription Factor Axxa-pf0095
          From Pyrococcus Furiosus
 pdb|2QUF|B Chain B, Crystal Structure Of Transcription Factor Axxa-pf0095
          From Pyrococcus Furiosus
          Length = 232

 Score = 27.7 bits (60), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 36 QYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYD 68
          +++ PTKK+ K+S  +++VF   P+  + K  D
Sbjct: 63 RFIGPTKKYYKISIAKSYVFTLTPEMFWYKGLD 95


>pdb|2QLZ|A Chain A, Crystal Structure Of Transcription Factor Pf0095 From
          Pyrococcus Furiosus
 pdb|2QLZ|B Chain B, Crystal Structure Of Transcription Factor Pf0095 From
          Pyrococcus Furiosus
 pdb|2QLZ|C Chain C, Crystal Structure Of Transcription Factor Pf0095 From
          Pyrococcus Furiosus
 pdb|2QLZ|D Chain D, Crystal Structure Of Transcription Factor Pf0095 From
          Pyrococcus Furiosus
          Length = 232

 Score = 27.3 bits (59), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 36 QYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYD 68
          +++ PTKK+ K+S  +++VF   P+  + K  D
Sbjct: 63 RFIGPTKKYYKISIAKSYVFTLTPEXFWYKGLD 95


>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
          Length = 331

 Score = 26.2 bits (56), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 125 WGGGEHGTSTATIMSGLDVFAHNIETV 151
           W  GEHG S+  + SG++V   +++T+
Sbjct: 187 WVLGEHGDSSVPVWSGMNVAGVSLKTL 213


>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
           Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
           Phenyl)methyl)propanedioic Acid
 pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
           Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
           Phenyl)methyl)propanedioic Acid
 pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
           Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
           Phenyl)methyl)propanedioic Acid
 pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
           Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
           Phenyl)methyl)propanedioic Acid
          Length = 337

 Score = 26.2 bits (56), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 125 WGGGEHGTSTATIMSGLDVFAHNIETV 151
           W  GEHG S+  + SG++V   +++T+
Sbjct: 187 WVLGEHGDSSVPVWSGMNVAGVSLKTL 213


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,943,574
Number of Sequences: 62578
Number of extensions: 205590
Number of successful extensions: 589
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 5
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)