Query psy6794
Match_columns 165
No_of_seqs 307 out of 1392
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 18:31:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2672|consensus 100.0 1.2E-39 2.6E-44 281.8 5.6 95 49-145 28-122 (360)
2 COG0320 LipA Lipoate synthase 100.0 6.3E-33 1.4E-37 238.8 5.6 91 1-101 214-304 (306)
3 PTZ00413 lipoate synthase; Pro 99.9 1.6E-28 3.6E-33 219.1 6.1 95 49-149 65-164 (398)
4 COG0320 LipA Lipoate synthase 99.9 3.7E-28 8.1E-33 209.3 4.2 66 80-150 21-86 (306)
5 PLN02428 lipoic acid synthase 99.9 3.6E-27 7.8E-32 208.1 6.0 70 80-149 48-117 (349)
6 PTZ00413 lipoate synthase; Pro 99.9 1.1E-26 2.3E-31 207.5 6.5 87 2-98 297-383 (398)
7 TIGR00510 lipA lipoate synthas 99.9 1.5E-24 3.2E-29 187.9 5.3 87 2-98 209-295 (302)
8 KOG2672|consensus 99.9 1.2E-24 2.6E-29 188.7 4.2 96 1-108 257-352 (360)
9 TIGR00510 lipA lipoate synthas 99.9 5.1E-24 1.1E-28 184.5 5.5 65 80-149 14-78 (302)
10 PLN02428 lipoic acid synthase 99.9 8.2E-24 1.8E-28 186.8 4.8 86 2-97 249-334 (349)
11 PRK12928 lipoyl synthase; Prov 99.9 2.4E-22 5.2E-27 172.8 5.9 84 2-95 206-289 (290)
12 PRK12928 lipoyl synthase; Prov 99.7 2.6E-18 5.6E-23 147.9 4.3 65 80-149 11-75 (290)
13 PRK05481 lipoyl synthase; Prov 99.4 2.8E-13 6E-18 116.3 5.2 89 2-100 198-286 (289)
14 PRK05481 lipoyl synthase; Prov 99.3 2.3E-12 5E-17 110.6 4.4 64 81-149 5-68 (289)
15 TIGR03700 mena_SCO4494 putativ 97.0 0.00083 1.8E-08 59.0 4.1 44 2-45 204-251 (351)
16 PRK08508 biotin synthase; Prov 96.6 0.0026 5.5E-08 54.4 4.5 38 2-40 153-190 (279)
17 PRK15108 biotin synthase; Prov 96.0 0.0085 1.8E-07 52.9 4.5 38 2-40 187-226 (345)
18 TIGR03699 mena_SCO4550 menaqui 96.0 0.0093 2E-07 51.7 4.6 40 3-42 198-241 (340)
19 PRK06256 biotin synthase; Vali 95.5 0.019 4.2E-07 49.5 4.5 37 3-40 204-240 (336)
20 TIGR00423 radical SAM domain p 95.2 0.016 3.5E-07 49.8 3.1 34 3-36 162-195 (309)
21 PRK07094 biotin synthase; Prov 95.2 0.027 5.8E-07 48.3 4.3 36 3-38 182-218 (323)
22 TIGR03550 F420_cofG 7,8-dideme 95.1 0.024 5.2E-07 49.3 3.9 27 2-28 165-191 (322)
23 PRK07360 FO synthase subunit 2 94.6 0.029 6.4E-07 49.8 3.2 36 3-38 218-253 (371)
24 PRK06267 hypothetical protein; 94.5 0.056 1.2E-06 47.7 4.5 37 4-41 171-207 (350)
25 COG0502 BioB Biotin synthase a 94.3 0.056 1.2E-06 48.4 4.2 35 4-38 197-232 (335)
26 TIGR00433 bioB biotin syntheta 94.3 0.065 1.4E-06 45.0 4.3 37 4-41 176-212 (296)
27 PRK08444 hypothetical protein; 94.1 0.05 1.1E-06 48.5 3.5 33 3-35 206-238 (353)
28 PRK05927 hypothetical protein; 93.8 0.049 1.1E-06 48.4 2.9 33 3-35 202-234 (350)
29 TIGR03551 F420_cofH 7,8-dideme 93.6 0.056 1.2E-06 47.3 2.8 35 3-37 196-230 (343)
30 PRK05926 hypothetical protein; 93.2 0.098 2.1E-06 46.9 3.8 35 4-38 225-259 (370)
31 PLN02389 biotin synthase 92.7 0.13 2.8E-06 46.4 3.9 32 4-35 231-264 (379)
32 TIGR01212 radical SAM protein, 92.5 0.19 4.1E-06 43.5 4.4 34 4-37 181-215 (302)
33 PRK14332 (dimethylallyl)adenos 92.4 0.19 4.1E-06 46.0 4.5 35 4-38 306-341 (449)
34 TIGR01125 MiaB-like tRNA modif 91.7 0.25 5.4E-06 44.5 4.4 35 4-38 290-325 (430)
35 PRK08445 hypothetical protein; 91.6 0.14 3E-06 45.4 2.6 32 4-35 200-231 (348)
36 TIGR01579 MiaB-like-C MiaB-lik 91.5 0.28 6E-06 43.8 4.5 35 4-38 293-328 (414)
37 PRK06245 cofG FO synthase subu 91.4 0.21 4.5E-06 43.3 3.5 27 3-29 170-196 (336)
38 PRK09234 fbiC FO synthase; Rev 91.2 0.24 5.2E-06 49.1 4.1 36 3-38 235-275 (843)
39 smart00729 Elp3 Elongator prot 90.8 0.41 9E-06 36.3 4.2 36 3-38 154-190 (216)
40 TIGR00089 RNA modification enz 90.7 0.33 7.1E-06 43.5 4.1 36 4-39 294-330 (429)
41 TIGR01578 MiaB-like-B MiaB-lik 90.2 0.43 9.3E-06 43.0 4.5 34 4-37 288-322 (420)
42 TIGR03471 HpnJ hopanoid biosyn 88.0 0.68 1.5E-05 42.0 4.2 35 3-37 340-375 (472)
43 PRK14331 (dimethylallyl)adenos 88.0 0.72 1.6E-05 41.7 4.3 34 4-37 300-334 (437)
44 PRK14338 (dimethylallyl)adenos 88.0 0.76 1.7E-05 42.0 4.5 35 4-38 310-345 (459)
45 PRK14325 (dimethylallyl)adenos 88.0 0.72 1.6E-05 41.7 4.3 35 4-38 304-339 (444)
46 TIGR01574 miaB-methiolase tRNA 87.7 0.81 1.8E-05 41.4 4.5 34 4-37 302-336 (438)
47 PRK09234 fbiC FO synthase; Rev 87.3 0.6 1.3E-05 46.4 3.6 33 3-35 683-715 (843)
48 PRK14862 rimO ribosomal protei 87.1 0.93 2E-05 41.2 4.5 35 4-38 301-336 (440)
49 TIGR02026 BchE magnesium-proto 85.9 1.1 2.4E-05 41.2 4.4 36 4-40 341-377 (497)
50 PRK14326 (dimethylallyl)adenos 85.7 1.2 2.6E-05 41.4 4.5 34 4-37 312-346 (502)
51 PRK08207 coproporphyrinogen II 85.3 1.2 2.5E-05 41.5 4.2 34 4-37 324-358 (488)
52 PRK14334 (dimethylallyl)adenos 84.8 1.4 3E-05 40.0 4.4 35 4-38 292-327 (440)
53 PRK14328 (dimethylallyl)adenos 84.0 1.3 2.9E-05 40.0 3.9 35 4-38 302-337 (439)
54 PRK09240 thiH thiamine biosynt 83.8 0.76 1.7E-05 40.9 2.3 27 4-30 221-247 (371)
55 PRK08599 coproporphyrinogen II 83.3 1.4 3E-05 38.8 3.7 33 5-37 156-189 (377)
56 PRK05799 coproporphyrinogen II 83.2 1.4 3E-05 38.7 3.7 33 4-36 154-187 (374)
57 cd01335 Radical_SAM Radical SA 82.3 1.3 2.8E-05 32.9 2.7 38 3-40 142-181 (204)
58 PRK08898 coproporphyrinogen II 79.5 2.6 5.6E-05 37.7 4.1 34 5-38 177-211 (394)
59 PRK14337 (dimethylallyl)adenos 79.4 3 6.4E-05 38.0 4.5 34 4-37 304-338 (446)
60 PRK09613 thiH thiamine biosynt 79.2 2.2 4.8E-05 39.7 3.7 37 4-41 238-280 (469)
61 TIGR00539 hemN_rel putative ox 78.6 2.5 5.4E-05 37.1 3.6 33 5-37 156-189 (360)
62 COG2516 Biotin synthase-relate 76.1 2.8 6E-05 37.9 3.2 28 4-31 191-218 (339)
63 PRK14335 (dimethylallyl)adenos 74.8 4.7 0.0001 36.9 4.5 35 4-38 313-348 (455)
64 PF02449 Glyco_hydro_42: Beta- 72.8 1.1 2.4E-05 39.4 -0.1 41 14-54 9-53 (374)
65 COG1242 Predicted Fe-S oxidore 72.2 5 0.00011 35.9 3.8 30 5-34 187-217 (312)
66 COG0621 MiaB 2-methylthioadeni 72.0 5.7 0.00012 36.9 4.3 36 4-39 300-336 (437)
67 PRK07379 coproporphyrinogen II 72.0 4.9 0.00011 36.1 3.8 33 5-37 171-204 (400)
68 PRK14329 (dimethylallyl)adenos 71.8 5.8 0.00013 36.4 4.3 35 4-38 328-363 (467)
69 TIGR02351 thiH thiazole biosyn 70.2 3 6.4E-05 37.1 2.0 27 3-29 219-245 (366)
70 PRK14336 (dimethylallyl)adenos 69.4 7.7 0.00017 35.1 4.5 35 4-38 279-314 (418)
71 PF08219 TOM13: Outer membrane 68.1 0.9 1.9E-05 33.0 -1.4 10 5-14 47-56 (77)
72 PRK14340 (dimethylallyl)adenos 67.0 9.1 0.0002 35.0 4.5 35 4-38 303-338 (445)
73 PRK14327 (dimethylallyl)adenos 66.5 9 0.0002 36.0 4.5 35 4-38 367-402 (509)
74 PRK14330 (dimethylallyl)adenos 66.2 9.4 0.0002 34.5 4.4 35 4-38 295-330 (434)
75 PRK09057 coproporphyrinogen II 64.3 8.9 0.00019 34.1 3.8 33 6-38 160-193 (380)
76 COG1654 BirA Biotin operon rep 63.5 11 0.00023 27.2 3.4 33 10-42 29-63 (79)
77 PRK05904 coproporphyrinogen II 62.0 12 0.00026 33.2 4.2 34 5-38 159-193 (353)
78 PRK08629 coproporphyrinogen II 61.3 11 0.00023 34.5 3.9 34 5-38 203-237 (433)
79 COG1032 Fe-S oxidoreductase [E 61.3 7.7 0.00017 33.9 2.8 28 3-30 354-385 (490)
80 PRK09058 coproporphyrinogen II 61.3 12 0.00026 34.1 4.2 33 5-37 219-252 (449)
81 PRK14333 (dimethylallyl)adenos 60.8 14 0.0003 33.7 4.4 35 4-38 310-345 (448)
82 PRK08446 coproporphyrinogen II 60.5 11 0.00025 33.0 3.7 32 6-37 155-187 (350)
83 PF10582 Connexin_CCC: Gap jun 57.2 4.5 9.9E-05 28.4 0.6 19 110-128 20-38 (67)
84 cd05009 SIS_GlmS_GlmD_2 SIS (S 54.8 18 0.0004 26.6 3.6 31 9-39 70-100 (153)
85 PRK14339 (dimethylallyl)adenos 53.1 22 0.00048 32.1 4.4 35 4-38 285-320 (420)
86 cd04795 SIS SIS domain. SIS (S 52.9 30 0.00065 23.0 4.1 32 3-35 47-81 (87)
87 KOG4730|consensus 51.1 60 0.0013 31.0 7.0 103 11-148 56-158 (518)
88 cd01481 vWA_collagen_alpha3-VI 50.8 20 0.00043 28.0 3.4 35 3-37 108-142 (165)
89 PRK12276 putative heme peroxid 50.3 37 0.0008 29.4 5.1 43 9-56 74-116 (248)
90 cd04734 OYE_like_3_FMN Old yel 50.2 25 0.00055 31.0 4.2 30 11-40 224-256 (343)
91 COG1060 ThiH Thiamine biosynth 50.0 16 0.00034 33.1 3.0 24 4-27 217-240 (370)
92 cd04905 ACT_CM-PDT C-terminal 49.4 26 0.00056 23.9 3.4 39 3-43 1-39 (80)
93 TIGR01211 ELP3 histone acetylt 48.2 23 0.00049 33.6 3.8 32 5-36 261-296 (522)
94 cd01482 vWA_collagen_alphaI-XI 47.9 17 0.00036 27.8 2.4 29 8-36 110-138 (164)
95 PRK08318 dihydropyrimidine deh 45.3 1.1E+02 0.0024 27.4 7.6 95 6-113 102-198 (420)
96 PF13653 GDPD_2: Glycerophosph 45.3 21 0.00045 21.3 2.0 15 18-32 10-24 (30)
97 cd05008 SIS_GlmS_GlmD_1 SIS (S 44.9 31 0.00067 24.8 3.4 33 4-37 47-82 (126)
98 cd00954 NAL N-Acetylneuraminic 43.9 43 0.00094 28.5 4.6 38 5-42 72-112 (288)
99 cd02810 DHOD_DHPD_FMN Dihydroo 43.4 33 0.00071 28.8 3.7 26 10-35 171-196 (289)
100 PF09524 Phg_2220_C: Conserved 43.1 16 0.00034 26.2 1.5 32 11-42 31-62 (74)
101 PRK00955 hypothetical protein; 42.8 33 0.00071 33.4 4.1 38 4-42 482-520 (620)
102 PRK09249 coproporphyrinogen II 42.7 33 0.00071 31.2 3.9 34 5-38 207-241 (453)
103 PF01380 SIS: SIS domain SIS d 42.1 36 0.00077 24.3 3.3 32 6-37 58-89 (131)
104 PF13985 YbgS: YbgS-like prote 41.6 12 0.00026 29.3 0.8 17 109-125 88-104 (122)
105 PF15088 NADH_dh_m_C1: NADH de 41.4 25 0.00053 23.5 2.1 28 80-107 8-35 (49)
106 PRK03620 5-dehydro-4-deoxygluc 41.3 50 0.0011 28.4 4.6 32 4-35 77-108 (303)
107 PRK05628 coproporphyrinogen II 41.1 38 0.00083 29.8 4.0 34 5-38 164-198 (375)
108 PRK00957 methionine synthase; 40.8 27 0.00058 29.9 2.9 25 14-39 35-59 (305)
109 TIGR00538 hemN oxygen-independ 40.0 46 0.00099 30.3 4.4 35 4-38 206-241 (455)
110 TIGR00683 nanA N-acetylneurami 39.8 58 0.0013 27.9 4.8 39 4-42 71-112 (290)
111 COG1094 Predicted RNA-binding 39.1 9.9 0.00022 31.9 -0.0 46 8-56 74-119 (194)
112 KOG4355|consensus 39.0 26 0.00056 33.1 2.6 38 4-41 343-382 (547)
113 PRK11382 frlB fructoselysine-6 38.8 51 0.0011 28.8 4.4 37 3-40 92-131 (340)
114 cd04905 ACT_CM-PDT C-terminal 38.7 39 0.00085 22.9 3.0 25 13-37 55-79 (80)
115 TIGR03249 KdgD 5-dehydro-4-deo 38.7 56 0.0012 27.9 4.5 32 3-34 74-105 (296)
116 PRK13347 coproporphyrinogen II 38.6 48 0.001 30.2 4.3 34 5-38 208-242 (453)
117 TIGR00695 uxuA mannonate dehyd 38.4 30 0.00065 31.9 2.9 37 5-41 70-114 (394)
118 cd03311 CIMS_C_terminal_like C 38.4 28 0.00061 29.9 2.7 29 14-42 36-64 (332)
119 PF05504 Spore_GerAC: Spore ge 38.2 13 0.00028 28.6 0.5 27 14-40 107-134 (171)
120 cd04868 ACT_AK-like ACT domain 38.1 53 0.0011 19.4 3.2 31 8-38 6-38 (60)
121 cd05014 SIS_Kpsf KpsF-like pro 37.9 52 0.0011 23.7 3.7 31 8-38 54-84 (128)
122 PF00701 DHDPS: Dihydrodipicol 37.6 55 0.0012 27.6 4.3 40 3-42 70-112 (289)
123 cd00945 Aldolase_Class_I Class 37.5 46 0.001 25.3 3.5 38 4-41 49-93 (201)
124 PRK06582 coproporphyrinogen II 37.4 46 0.00099 29.9 3.9 33 6-38 167-200 (390)
125 PF11181 YflT: Heat induced st 36.6 42 0.0009 24.4 3.0 24 7-30 2-25 (103)
126 cd04931 ACT_PAH ACT domain of 36.0 55 0.0012 23.7 3.5 42 2-45 13-54 (90)
127 TIGR00282 metallophosphoestera 35.5 36 0.00077 29.5 2.8 19 18-36 49-67 (266)
128 KOG4233|consensus 35.5 7.9 0.00017 28.7 -1.0 28 7-40 24-53 (90)
129 TIGR01210 conserved hypothetic 35.3 41 0.00088 29.3 3.2 24 5-28 174-202 (313)
130 TIGR02313 HpaI-NOT-DapA 2,4-di 34.9 72 0.0016 27.4 4.6 39 4-42 70-111 (294)
131 cd03465 URO-D_like The URO-D _ 34.8 45 0.00098 28.2 3.3 67 90-160 225-292 (330)
132 cd04930 ACT_TH ACT domain of t 34.1 55 0.0012 24.8 3.4 40 3-44 41-80 (115)
133 COG3160 Rsd Regulator of sigma 34.0 4.1 8.8E-05 33.1 -3.0 73 38-119 39-123 (162)
134 PLN02681 proline dehydrogenase 33.9 40 0.00088 31.3 3.1 22 10-31 90-111 (455)
135 PRK05660 HemN family oxidoredu 32.8 59 0.0013 28.9 3.9 34 5-38 163-197 (378)
136 cd03174 DRE_TIM_metallolyase D 32.3 55 0.0012 26.6 3.3 30 11-40 15-44 (265)
137 PRK09121 5-methyltetrahydropte 32.2 44 0.00096 29.5 2.9 29 13-41 38-66 (339)
138 PRK06520 5-methyltetrahydropte 32.1 45 0.00098 29.8 3.0 28 13-40 43-70 (368)
139 cd04880 ACT_AAAH-PDT-like ACT 31.7 73 0.0016 21.2 3.4 36 6-43 2-37 (75)
140 cd01480 vWA_collagen_alpha_1-V 31.7 48 0.001 26.0 2.8 22 14-35 126-147 (186)
141 PF01717 Meth_synt_2: Cobalami 31.3 43 0.00094 28.8 2.7 31 14-44 37-67 (324)
142 PF01207 Dus: Dihydrouridine s 31.1 42 0.00092 29.1 2.6 28 8-35 131-158 (309)
143 cd00951 KDGDH 5-dehydro-4-deox 31.1 87 0.0019 26.7 4.5 30 5-34 71-100 (289)
144 cd01475 vWA_Matrilin VWA_Matri 30.8 52 0.0011 26.6 3.0 32 4-35 111-142 (224)
145 PF05893 LuxC: Acyl-CoA reduct 30.4 55 0.0012 29.7 3.3 35 8-42 348-383 (399)
146 PRK08208 coproporphyrinogen II 30.0 69 0.0015 29.0 3.8 33 5-37 197-230 (430)
147 PF13277 YmdB: YmdB-like prote 29.9 37 0.00081 29.6 2.0 24 9-36 41-64 (253)
148 PRK08091 ribulose-phosphate 3- 29.8 44 0.00095 28.4 2.4 20 19-38 191-210 (228)
149 cd04892 ACT_AK-like_2 ACT doma 29.7 74 0.0016 19.2 2.9 30 9-38 9-38 (65)
150 PLN02495 oxidoreductase, actin 29.5 2.4E+02 0.0051 25.8 7.2 94 5-111 115-210 (385)
151 PF07485 DUF1529: Domain of Un 29.2 62 0.0013 25.1 2.9 31 13-43 66-97 (123)
152 PRK06233 hypothetical protein; 29.1 53 0.0012 29.3 3.0 27 14-40 45-71 (372)
153 PLN02417 dihydrodipicolinate s 28.7 1.1E+02 0.0024 25.9 4.8 38 4-41 71-111 (280)
154 PF11305 DUF3107: Protein of u 28.7 93 0.002 22.3 3.6 35 9-43 17-56 (74)
155 PF12646 DUF3783: Domain of un 28.7 1.5E+02 0.0032 19.6 4.4 41 7-48 4-44 (58)
156 cd00952 CHBPH_aldolase Trans-o 28.5 1E+02 0.0023 26.6 4.6 39 4-42 78-119 (309)
157 PLN03128 DNA topoisomerase 2; 28.5 37 0.00079 35.3 2.0 44 9-55 587-660 (1135)
158 PRK08575 5-methyltetrahydropte 28.4 55 0.0012 28.6 2.9 24 14-37 39-62 (326)
159 PTZ00333 triosephosphate isome 27.8 58 0.0012 28.0 2.8 30 10-39 104-134 (255)
160 cd02933 OYE_like_FMN Old yello 27.8 71 0.0015 28.2 3.5 26 10-35 236-261 (338)
161 PF04412 DUF521: Protein of un 27.8 81 0.0018 29.0 3.9 91 13-128 271-366 (400)
162 PRK13413 mpi multiple promoter 27.6 74 0.0016 25.4 3.3 29 10-38 73-101 (200)
163 COG4274 Uncharacterized conser 26.6 62 0.0013 24.8 2.5 29 9-37 24-56 (104)
164 PRK10605 N-ethylmaleimide redu 26.5 78 0.0017 28.2 3.5 32 13-44 150-196 (362)
165 cd04913 ACT_AKii-LysC-BS-like_ 26.1 89 0.0019 19.7 2.9 30 8-37 7-36 (75)
166 PF06778 Chlor_dismutase: Chlo 26.0 28 0.00061 28.9 0.6 43 9-56 44-86 (193)
167 cd01132 F1_ATPase_alpha F1 ATP 26.0 72 0.0016 27.9 3.1 40 5-44 100-142 (274)
168 PLN02561 triosephosphate isome 25.9 65 0.0014 27.8 2.8 113 10-151 103-221 (253)
169 cd06556 ICL_KPHMT Members of t 25.8 87 0.0019 26.6 3.5 28 9-36 83-111 (240)
170 COG1533 SplB DNA repair photol 25.7 82 0.0018 27.6 3.5 27 10-36 194-220 (297)
171 cd04735 OYE_like_4_FMN Old yel 25.5 86 0.0019 27.6 3.6 27 11-37 231-257 (353)
172 cd00950 DHDPS Dihydrodipicolin 25.5 1E+02 0.0023 25.8 4.0 32 4-35 70-102 (284)
173 cd01133 F1-ATPase_beta F1 ATP 25.3 67 0.0015 28.0 2.8 43 5-47 101-146 (274)
174 PF01037 AsnC_trans_reg: AsnC 25.2 77 0.0017 20.5 2.5 50 87-154 3-52 (74)
175 cd04923 ACT_AK-LysC-DapG-like_ 25.1 1.2E+02 0.0026 18.6 3.4 27 10-36 10-36 (63)
176 PRK11302 DNA-binding transcrip 25.1 1.2E+02 0.0025 25.2 4.1 33 3-36 175-210 (284)
177 PRK13938 phosphoheptose isomer 25.1 1.2E+02 0.0027 24.8 4.2 35 3-38 113-150 (196)
178 PRK04147 N-acetylneuraminate l 25.0 1.3E+02 0.0029 25.5 4.6 38 5-42 75-115 (293)
179 cd00408 DHDPS-like Dihydrodipi 25.0 1.4E+02 0.0029 24.9 4.5 32 4-35 67-99 (281)
180 COG1692 Calcineurin-like phosp 24.9 56 0.0012 28.8 2.2 23 19-41 50-74 (266)
181 PRK08366 vorA 2-ketoisovalerat 24.8 1E+02 0.0022 28.1 3.9 36 6-42 263-300 (390)
182 PRK08745 ribulose-phosphate 3- 24.6 61 0.0013 27.2 2.3 20 19-38 183-202 (223)
183 PRK03170 dihydrodipicolinate s 24.5 1.1E+02 0.0024 25.8 4.0 31 4-34 71-102 (292)
184 cd01472 vWA_collagen von Wille 24.5 84 0.0018 23.7 2.9 31 6-36 108-138 (164)
185 TIGR00262 trpA tryptophan synt 24.1 90 0.0019 26.5 3.3 32 3-38 198-230 (256)
186 cd02940 DHPD_FMN Dihydropyrimi 24.1 3.4E+02 0.0074 23.2 6.9 89 11-113 108-198 (299)
187 PRK13523 NADPH dehydrogenase N 24.1 94 0.002 27.5 3.6 26 11-36 223-248 (337)
188 cd04728 ThiG Thiazole synthase 24.0 81 0.0018 27.5 3.0 30 3-35 9-40 (248)
189 PRK09993 C-lysozyme inhibitor; 23.9 17 0.00038 29.5 -1.0 54 82-137 51-106 (153)
190 PF13714 PEP_mutase: Phosphoen 23.8 1.2E+02 0.0025 25.8 3.9 29 9-37 79-107 (238)
191 PRK09565 hypothetical protein; 23.7 79 0.0017 30.4 3.1 43 8-55 75-117 (533)
192 PRK06294 coproporphyrinogen II 23.4 1.1E+02 0.0023 27.2 3.8 33 6-38 160-193 (370)
193 cd05013 SIS_RpiR RpiR-like pro 23.3 1.3E+02 0.0027 21.3 3.5 26 11-37 71-96 (139)
194 PRK11780 isoprenoid biosynthes 23.2 1E+02 0.0022 25.6 3.5 35 1-35 1-40 (217)
195 cd04936 ACT_AKii-LysC-BS-like_ 23.1 1.4E+02 0.003 18.3 3.4 27 10-36 10-36 (63)
196 TIGR03554 F420_G6P_DH glucose- 23.0 1E+02 0.0022 26.8 3.5 27 10-36 284-310 (331)
197 cd01477 vWA_F09G8-8_type VWA F 23.0 64 0.0014 26.1 2.1 21 15-35 148-168 (193)
198 PRK08005 epimerase; Validated 22.9 1.1E+02 0.0024 25.5 3.6 41 14-54 12-74 (210)
199 cd00245 Glm_e Coenzyme B12-dep 22.6 86 0.0019 29.3 3.1 30 9-39 23-55 (428)
200 PRK03906 mannonate dehydratase 22.5 79 0.0017 28.9 2.8 31 5-35 70-103 (385)
201 PF02885 Glycos_trans_3N: Glyc 22.3 89 0.0019 20.9 2.4 18 11-28 48-65 (66)
202 COG0635 HemN Coproporphyrinoge 22.2 1.3E+02 0.0027 27.6 4.1 33 6-38 194-227 (416)
203 PRK07565 dihydroorotate dehydr 22.2 1.3E+02 0.0028 26.2 4.0 95 5-116 103-198 (334)
204 PF09383 NIL: NIL domain; Int 22.1 77 0.0017 21.4 2.1 27 5-31 47-73 (76)
205 cd03768 SR_ResInv Serine Recom 21.9 1.4E+02 0.0031 21.4 3.6 29 10-38 66-94 (126)
206 cd03174 DRE_TIM_metallolyase D 21.9 1.5E+02 0.0033 24.0 4.2 27 8-34 137-165 (265)
207 cd02931 ER_like_FMN Enoate red 21.7 1.1E+02 0.0024 27.4 3.5 25 11-35 248-272 (382)
208 PRK14057 epimerase; Provisiona 21.5 74 0.0016 27.6 2.3 20 19-38 205-224 (254)
209 PF01535 PPR: PPR repeat; Int 21.5 1E+02 0.0022 16.2 2.2 17 13-29 15-31 (31)
210 PF01565 FAD_binding_4: FAD bi 21.5 1.1E+02 0.0023 22.5 2.9 90 12-120 8-97 (139)
211 PF07868 DUF1655: Protein of u 21.3 56 0.0012 22.1 1.2 13 130-142 36-48 (55)
212 cd04916 ACT_AKiii-YclM-BS_2 AC 21.3 1.5E+02 0.0032 18.6 3.2 30 9-38 10-39 (66)
213 PF00006 ATP-synt_ab: ATP synt 21.3 86 0.0019 26.1 2.6 39 6-44 45-86 (215)
214 cd04904 ACT_AAAH ACT domain of 21.3 1.4E+02 0.0031 20.1 3.3 38 4-43 1-38 (74)
215 TIGR02887 spore_ger_x_C germin 21.3 55 0.0012 28.5 1.5 28 14-41 308-335 (371)
216 TIGR00674 dapA dihydrodipicoli 21.2 1.8E+02 0.004 24.5 4.7 38 4-41 68-108 (285)
217 PRK01254 hypothetical protein; 21.2 1.1E+02 0.0023 30.6 3.5 38 5-43 562-600 (707)
218 PF04566 RNA_pol_Rpb2_4: RNA p 21.0 1.2E+02 0.0025 20.7 2.8 25 5-29 5-29 (63)
219 COG0036 Rpe Pentose-5-phosphat 20.8 95 0.0021 26.5 2.8 22 18-39 180-201 (220)
220 COG1458 Predicted DNA-binding 20.7 52 0.0011 28.2 1.1 55 10-68 22-77 (221)
221 KOG1643|consensus 20.6 1.7E+02 0.0037 25.4 4.2 116 10-153 101-221 (247)
222 cd06323 PBP1_ribose_binding Pe 20.4 1.8E+02 0.0039 22.7 4.2 34 4-38 57-90 (268)
223 COG0826 Collagenase and relate 20.3 1.7E+02 0.0036 26.3 4.4 77 14-108 78-160 (347)
224 PF00239 Resolvase: Resolvase, 20.2 98 0.0021 22.5 2.5 27 10-36 71-97 (141)
225 cd00311 TIM Triosephosphate is 20.2 1E+02 0.0022 26.2 2.9 30 10-39 99-129 (242)
226 TIGR03842 F420_CPS_4043 F420-d 20.2 1.2E+02 0.0026 26.2 3.4 26 10-35 284-309 (330)
227 TIGR03557 F420_G6P_family F420 20.2 1.4E+02 0.003 25.8 3.8 26 10-35 268-293 (316)
228 PF12010 DUF3502: Domain of un 20.2 47 0.001 25.5 0.8 27 4-30 90-116 (134)
229 TIGR03620 F420_MSMEG_4141 prob 20.2 1.4E+02 0.003 25.7 3.7 28 9-36 231-258 (278)
230 COG0159 TrpA Tryptophan syntha 20.0 1.4E+02 0.003 26.2 3.7 23 13-35 29-51 (265)
No 1
>KOG2672|consensus
Probab=100.00 E-value=1.2e-39 Score=281.75 Aligned_cols=95 Identities=58% Similarity=0.975 Sum_probs=86.2
Q ss_pred cccccccCCCCccchhhhhccccccccCccccccCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCC
Q psy6794 49 YRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGG 128 (165)
Q Consensus 49 ~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g 128 (165)
+|+|||++....-..|+.|.++++++ |.. ++|+|+|||.++|.+++|.+++..|++++||||||||+||||||||++|
T Consensus 28 s~~DFv~~d~~~~~~~~~e~~~~~~~-~~~-~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPNiGECWgG~ 105 (360)
T KOG2672|consen 28 SFADFVSGDKPLRADWDFEKGRKKRE-GEE-RLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPNIGECWGGG 105 (360)
T ss_pred chhhhhcCCcccccccchhhchhhhh-ccc-cccCChhhcccCCCCccHHHHHHHHhhCchhhhhhhccCCchhhccCCC
Confidence 68999998766556788888887777 543 8999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeeeecccccc
Q psy6794 129 EHGTSTATIMSGLDVFA 145 (165)
Q Consensus 129 ~~~~aT~~im~~~~~c~ 145 (165)
++++||||||.+||+||
T Consensus 106 d~~~ATATIMlmGDTCT 122 (360)
T KOG2672|consen 106 DKSTATATIMLMGDTCT 122 (360)
T ss_pred CCcceeEEEEeecCccc
Confidence 99999999999999854
No 2
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.97 E-value=6.3e-33 Score=238.78 Aligned_cols=91 Identities=38% Similarity=0.644 Sum_probs=85.9
Q ss_pred CCccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCcccc
Q psy6794 1 MRESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENER 80 (165)
Q Consensus 1 ~~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~ 80 (165)
+||||||||||||++||.|+|+|||++||||||||||||||++|+||. +||+ |++|+.|+ ..++++||. +
T Consensus 214 ~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~HlpV~---ryv~-----PeeF~~~~-~~a~~~GF~-~ 283 (306)
T COG0320 214 PTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLPVQ---RYVT-----PEEFDELE-EVAEEMGFL-H 283 (306)
T ss_pred ccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccccCCce---eccC-----HHHHHHHH-HHHHHccch-h
Confidence 589999999999999999999999999999999999999999999997 9999 78999997 788999998 8
Q ss_pred ccCCccccccCCCCchHHHHH
Q psy6794 81 LRLPPWLKTKIPTGSQFAKVK 101 (165)
Q Consensus 81 ~rKP~WLRvs~pag~~~~~V~ 101 (165)
+...|.+|+|+++++.|.+..
T Consensus 284 v~sgPlvRSSYhA~~~~~~~~ 304 (306)
T COG0320 284 VASGPLVRSSYHADEQFAEAE 304 (306)
T ss_pred hccCcccccccchHHHHHHhh
Confidence 999999999999999887654
No 3
>PTZ00413 lipoate synthase; Provisional
Probab=99.95 E-value=1.6e-28 Score=219.14 Aligned_cols=95 Identities=48% Similarity=0.876 Sum_probs=75.2
Q ss_pred cccccccCCCCccchhhhhccccccccCccccccCCccccccCCCCc----hHHHHHHHHhhcCccccccccCCCCcccc
Q psy6794 49 YRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGS----QFAKVKEQLRTLNLHTVCEEARCPNIGEC 124 (165)
Q Consensus 49 ~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rKP~WLRvs~pag~----~~~~V~~~l~~~~L~TVCeeA~CPNi~EC 124 (165)
++.+|+..+......+.... .+++ | ..+||+|||+++|.++ .|.+++++|++++||||||||+||||+||
T Consensus 65 ~~~~f~~l~~~~~~~~~~~~-~~~~--~---~~~kP~Wlk~~~~~~~~~~~~~~~~~~~~~~~~L~TVCeea~CPNi~EC 138 (398)
T PTZ00413 65 SLEGFVDLPEGLKPSAASIG-PIKR--G---EEPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTVCEEAKCPNIGEC 138 (398)
T ss_pred chhhhhcCccccccccccCC-CccC--C---CCCCCcceeecCCCCccccchHHHHHHHHHhCCCceeeCCCCCCChHHH
Confidence 34678765433222222222 2222 2 4689999999999988 89999999999999999999999999999
Q ss_pred ccCC-CCcceeeeeeeccccccccch
Q psy6794 125 WGGG-EHGTSTATIMSGLDVFAHNIE 149 (165)
Q Consensus 125 ~~~g-~~~~aT~~im~~~~~c~~~~~ 149 (165)
|++| ..|+|||||||+||+|||||.
T Consensus 139 ~~~~~~~~~~tATfmilG~~CTr~C~ 164 (398)
T PTZ00413 139 WGGGDEEGTATATIMVMGDHCTRGCR 164 (398)
T ss_pred hCCCCCCCCceeEeeecCCCCCCCCC
Confidence 9998 468888888999999999985
No 4
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.94 E-value=3.7e-28 Score=209.32 Aligned_cols=66 Identities=55% Similarity=0.997 Sum_probs=62.0
Q ss_pred cccCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccchh
Q psy6794 80 RLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIET 150 (165)
Q Consensus 80 ~~rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~~ 150 (165)
..+||+|+|+++|.++.|.+++++||+++||||||||+||||+|||++| |||||||| |+|||+|.-
T Consensus 21 ~~rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~---tATFmImG--~~CTR~C~F 86 (306)
T COG0320 21 LLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG---TATFMILG--DICTRRCRF 86 (306)
T ss_pred hccCcHhheecCCCCchHHHHHHHHHhcCCceecccCCCCChHHHhcCC---ceEEeecc--chhccCCCc
Confidence 5789999999999999999999999999999999999999999999965 88888888 999999963
No 5
>PLN02428 lipoic acid synthase
Probab=99.94 E-value=3.6e-27 Score=208.09 Aligned_cols=70 Identities=51% Similarity=0.978 Sum_probs=67.1
Q ss_pred cccCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccch
Q psy6794 80 RLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIE 149 (165)
Q Consensus 80 ~~rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~ 149 (165)
..+||+|||+++|.+++|.+++++|++++||||||||+||||+|||++|.+++||||+|++|+.|++||.
T Consensus 48 ~~~~p~wl~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~~~~~~taT~milg~gCtr~Cr 117 (349)
T PLN02428 48 PLPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRGCR 117 (349)
T ss_pred CCCCCcceeecCCCCchHHHHHHHHHHCCCceeecCCCCCChHHhhCCCCCCCceEEEEEecCCCCCCCC
Confidence 5689999999999999999999999999999999999999999999999889999999999999999996
No 6
>PTZ00413 lipoate synthase; Provisional
Probab=99.93 E-value=1.1e-26 Score=207.54 Aligned_cols=87 Identities=43% Similarity=0.618 Sum_probs=82.8
Q ss_pred CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccc
Q psy6794 2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERL 81 (165)
Q Consensus 2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~ 81 (165)
+|||||||||||++|++++|+||+++|||++|||||||||++|+||. +||+ |++|+.|+ +++.+.||. ++
T Consensus 297 tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~---~yv~-----P~~F~~~~-~~a~~~Gf~-~v 366 (398)
T PTZ00413 297 TKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVS---RYAH-----PKEFEMWE-EEAMKMGFL-YC 366 (398)
T ss_pred EeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCce---eccC-----HHHHHHHH-HHHHHcCCc-eE
Confidence 79999999999999999999999999999999999999999999997 9999 88999998 789999998 99
Q ss_pred cCCccccccCCCCchHH
Q psy6794 82 RLPPWLKTKIPTGSQFA 98 (165)
Q Consensus 82 rKP~WLRvs~pag~~~~ 98 (165)
...|.+|++|++++.|.
T Consensus 367 ~sgPlVRSSY~A~e~~~ 383 (398)
T PTZ00413 367 ASGPLVRSSYRAGEYYI 383 (398)
T ss_pred EecCccccchhccHHHH
Confidence 99999999999998554
No 7
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.90 E-value=1.5e-24 Score=187.91 Aligned_cols=87 Identities=39% Similarity=0.628 Sum_probs=82.3
Q ss_pred CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccc
Q psy6794 2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERL 81 (165)
Q Consensus 2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~ 81 (165)
+|||||||||||+||+.++|++|+++|+|++|||||||||++|+||. +||+ |++|+.|+ .++.+.||. ++
T Consensus 209 ~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~---~~~~-----p~~f~~~~-~~a~~~gf~-~v 278 (302)
T TIGR00510 209 TKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVK---RYVS-----PEEFDYYR-SVALEMGFL-HA 278 (302)
T ss_pred ecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccc---cCCC-----HHHHHHHH-HHHHHcCCh-he
Confidence 68999999999999999999999999999999999999999999997 9999 78999997 789999998 99
Q ss_pred cCCccccccCCCCchHH
Q psy6794 82 RLPPWLKTKIPTGSQFA 98 (165)
Q Consensus 82 rKP~WLRvs~pag~~~~ 98 (165)
...|.+|+||++++.|.
T Consensus 279 ~~~p~vrssy~a~~~~~ 295 (302)
T TIGR00510 279 ACGPFVRSSYHADSLFA 295 (302)
T ss_pred EecccchhhhhHHHHHH
Confidence 99999999999987654
No 8
>KOG2672|consensus
Probab=99.90 E-value=1.2e-24 Score=188.71 Aligned_cols=96 Identities=49% Similarity=0.724 Sum_probs=82.7
Q ss_pred CCccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCcccc
Q psy6794 1 MRESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENER 80 (165)
Q Consensus 1 ~~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~ 80 (165)
||||+||||||||+|||.++|+|||+++||++|+||||||+++|++|. +||++ ++|+.|+.|+ .+.||. +
T Consensus 257 itktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~---eyvtp--ekf~~w~~~~----~~lgf~-y 326 (360)
T KOG2672|consen 257 ITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVK---EYVTP--EKFDYWKEYG----EELGFL-Y 326 (360)
T ss_pred eehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeE---EeeCH--HHHHHHHHHh----hhcceE-E
Confidence 699999999999999999999999999999999999999999999997 99994 3466666665 478887 8
Q ss_pred ccCCccccccCCCCchHHHHHHHHhhcC
Q psy6794 81 LRLPPWLKTKIPTGSQFAKVKEQLRTLN 108 (165)
Q Consensus 81 ~rKP~WLRvs~pag~~~~~V~~~l~~~~ 108 (165)
+..+|.+|+++.+++-| |+++|+..+
T Consensus 327 ~AsgplvrSsykage~~--i~~~l~~r~ 352 (360)
T KOG2672|consen 327 VASGPLVRSSYKAGEYF--IKNVLEKRK 352 (360)
T ss_pred eccCceeechhhhhHHH--HHHHHHhcc
Confidence 99999999999988654 556665543
No 9
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.89 E-value=5.1e-24 Score=184.49 Aligned_cols=65 Identities=46% Similarity=0.929 Sum_probs=60.5
Q ss_pred cccCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccch
Q psy6794 80 RLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIE 149 (165)
Q Consensus 80 ~~rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~ 149 (165)
..+||+|||+++|.++.|.+++++|++++||||||||+||||+|||+++ |||||+++ |.|++||.
T Consensus 14 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~---tatfm~i~--~gC~~~C~ 78 (302)
T TIGR00510 14 LLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG---TATFMILG--DICTRRCP 78 (302)
T ss_pred cCCCCcceEecCCCCchHHHHHHHHHHCCCceeecCCCCCCcccccCCC---EEEEEecC--cCcCCCCC
Confidence 5689999999999999999999999999999999999999999999975 78887776 89999997
No 10
>PLN02428 lipoic acid synthase
Probab=99.89 E-value=8.2e-24 Score=186.82 Aligned_cols=86 Identities=44% Similarity=0.689 Sum_probs=81.7
Q ss_pred CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccc
Q psy6794 2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERL 81 (165)
Q Consensus 2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~ 81 (165)
+|||||||||||+||+.++|++|+++|||++|||||||||+.|+||. +||+ |++|+.|+ .++.+.||. ++
T Consensus 249 tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~---~~v~-----p~~f~~~~-~~~~~~gf~-~v 318 (349)
T PLN02428 249 TKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVK---EYVT-----PEKFEFWR-EYGEEMGFR-YV 318 (349)
T ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeee---cccC-----HHHHHHHH-HHHHHcCCc-eE
Confidence 69999999999999999999999999999999999999999999998 9999 78999997 889999998 99
Q ss_pred cCCccccccCCCCchH
Q psy6794 82 RLPPWLKTKIPTGSQF 97 (165)
Q Consensus 82 rKP~WLRvs~pag~~~ 97 (165)
...|.+|++|++++.|
T Consensus 319 ~sgp~vrssy~a~~~~ 334 (349)
T PLN02428 319 ASGPLVRSSYKAGEFF 334 (349)
T ss_pred EecCcccchhhhHHHH
Confidence 9999999999998754
No 11
>PRK12928 lipoyl synthase; Provisional
Probab=99.86 E-value=2.4e-22 Score=172.81 Aligned_cols=84 Identities=37% Similarity=0.620 Sum_probs=80.2
Q ss_pred CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccc
Q psy6794 2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERL 81 (165)
Q Consensus 2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~ 81 (165)
++|+||+|+|||++|+.++|++|++.|+|+++||||||||++|+||. +||+ |++|+.|. .++.+.||. ++
T Consensus 206 ~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~---~~~~-----~~~f~~~~-~~~~~~g~~-~~ 275 (290)
T PRK12928 206 TKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQ---RYWT-----PEEFEALG-QIARELGFS-HV 275 (290)
T ss_pred ecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCcee---eccC-----HHHHHHHH-HHHHHcCCc-ee
Confidence 68999999999999999999999999999999999999999999997 9999 78999997 889999997 99
Q ss_pred cCCccccccCCCCc
Q psy6794 82 RLPPWLKTKIPTGS 95 (165)
Q Consensus 82 rKP~WLRvs~pag~ 95 (165)
...|.+|+||++++
T Consensus 276 ~~~p~~rssy~a~~ 289 (290)
T PRK12928 276 RSGPLVRSSYHAGE 289 (290)
T ss_pred EecCcccccccCCC
Confidence 99999999999875
No 12
>PRK12928 lipoyl synthase; Provisional
Probab=99.72 E-value=2.6e-18 Score=147.90 Aligned_cols=65 Identities=42% Similarity=0.797 Sum_probs=60.1
Q ss_pred cccCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccch
Q psy6794 80 RLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIE 149 (165)
Q Consensus 80 ~~rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~ 149 (165)
..+||+|||+++|.+++|.++..++++++|||||++|+|||+++||+++ +||||+++ +.|+++|-
T Consensus 11 ~~~~p~w~~~~~~~~~~~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~---~~tfv~is--~gC~~~C~ 75 (290)
T PRK12928 11 VERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG---TATFLIMG--SICTRRCA 75 (290)
T ss_pred CCCCCcceeecCCCChhHHHHHHHHHcCCHHHHHHHhCCCcccccCCCC---EEEEEEec--ccccCcCC
Confidence 4689999999999999999999999999999999999999999999865 78888885 99999985
No 13
>PRK05481 lipoyl synthase; Provisional
Probab=99.39 E-value=2.8e-13 Score=116.29 Aligned_cols=89 Identities=40% Similarity=0.638 Sum_probs=79.6
Q ss_pred CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccc
Q psy6794 2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERL 81 (165)
Q Consensus 2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~ 81 (165)
..|++|+|+|||+|++.++|+.|++.++|.+.++||++|+.+|++|. ++|. ++.++.+. .+..+.||. .+
T Consensus 198 ~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~---~~~k-----~~r~~~l~-~~~~~i~~~-~~ 267 (289)
T PRK05481 198 TKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVE---RYVT-----PEEFDEYK-EIALELGFL-HV 267 (289)
T ss_pred EeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCC---CcCC-----HHHHHHHH-HHHHHcCch-he
Confidence 35899999999999999999999999999999999999999889997 7776 67778886 788899997 89
Q ss_pred cCCccccccCCCCchHHHH
Q psy6794 82 RLPPWLKTKIPTGSQFAKV 100 (165)
Q Consensus 82 rKP~WLRvs~pag~~~~~V 100 (165)
...|.+|+|+.++..+..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~ 286 (289)
T PRK05481 268 ASGPLVRSSYHADEQAAGA 286 (289)
T ss_pred EecCccccchhhHHHHhhh
Confidence 9999999999998866554
No 14
>PRK05481 lipoyl synthase; Provisional
Probab=99.28 E-value=2.3e-12 Score=110.60 Aligned_cols=64 Identities=52% Similarity=1.054 Sum_probs=58.5
Q ss_pred ccCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccch
Q psy6794 81 LRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIE 149 (165)
Q Consensus 81 ~rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~ 149 (165)
.++|+|+|+++|.++.|++...++++.+|||+|++|.|||+.+||.+ +++||++.. +.|.++|-
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~---~~~~fi~is--~GC~~~C~ 68 (289)
T PRK05481 5 ARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSR---GTATFMILG--DICTRRCP 68 (289)
T ss_pred CCCCcceeecCCCChhHHHHHHHHHhCChHHHHHhhCCCcchhccCC---CeEEEEEec--ccccCCCC
Confidence 46999999999999999999999999999999999999999999985 478888866 88888885
No 15
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=96.97 E-value=0.00083 Score=59.01 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=36.9
Q ss_pred CccceeeecCCCHHHHHHHHHHHHHcCCCe----eeeeeccCCCCCCC
Q psy6794 2 RESSIMLGLGETDAEVQQTLDDLLAAGVDC----VTLGQYMQPTKKHL 45 (165)
Q Consensus 2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~----~tigqyl~ps~~h~ 45 (165)
+.||+|+|+|||++|..+.|..|++.+++. ..|-|..+|...++
T Consensus 204 ~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl 251 (351)
T TIGR03700 204 TNATMLYGHIETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRL 251 (351)
T ss_pred cceEEEeeCCCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcc
Confidence 468999999999999999999999999986 55677777655544
No 16
>PRK08508 biotin synthase; Provisional
Probab=96.64 E-value=0.0026 Score=54.37 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=32.5
Q ss_pred CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCC
Q psy6794 2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQP 40 (165)
Q Consensus 2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~p 40 (165)
..||+|+|+|||++|+.+.|..|++.++|.+.+.- +.|
T Consensus 153 v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~-~~p 190 (279)
T PRK08508 153 LCSGGIFGLGESWEDRISFLKSLASLSPHSTPINF-FIP 190 (279)
T ss_pred ecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCC-cCC
Confidence 35899999999999999999999999999766554 444
No 17
>PRK15108 biotin synthase; Provisional
Probab=96.05 E-value=0.0085 Score=52.92 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=32.1
Q ss_pred CccceeeecCCCHHHHHHHHHHHHHc--CCCeeeeeeccCC
Q psy6794 2 RESSIMLGLGETDAEVQQTLDDLLAA--GVDCVTLGQYMQP 40 (165)
Q Consensus 2 ~ks~~m~glge~~~ev~~~~~dl~~~--~~d~~tigqyl~p 40 (165)
+-||+|+|||||++|+.+.+..|++. .++.+.+. ++.|
T Consensus 187 v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~-~~~P 226 (345)
T PRK15108 187 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPIN-MLVK 226 (345)
T ss_pred eeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeC-CccC
Confidence 35899999999999999999999999 66777776 4445
No 18
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=96.02 E-value=0.0093 Score=51.73 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=33.5
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeee----eeeccCCCC
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVT----LGQYMQPTK 42 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~t----igqyl~ps~ 42 (165)
.+++|+|+|||++++.+.+..|++.+++... |-++.+|..
T Consensus 198 ~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~ 241 (340)
T TIGR03699 198 TATMMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGN 241 (340)
T ss_pred cceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCC
Confidence 5899999999999999999999999998633 556666743
No 19
>PRK06256 biotin synthase; Validated
Probab=95.50 E-value=0.019 Score=49.52 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=32.4
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCC
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQP 40 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~p 40 (165)
.+++|+|+|||++++.+.+..|++.+++.+.+. .+.|
T Consensus 204 ~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~-~l~P 240 (336)
T PRK06256 204 CSGGIIGMGESLEDRVEHAFFLKELDADSIPIN-FLNP 240 (336)
T ss_pred ccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeec-cccc
Confidence 578999999999999999999999999988775 3444
No 20
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=95.20 E-value=0.016 Score=49.82 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=29.5
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
-||+|+|+|||+++..+.|..|++.+.+...+.-
T Consensus 162 ~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~ 195 (309)
T TIGR00423 162 TATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTE 195 (309)
T ss_pred eeeEEecCCCCHHHHHHHHHHHHhhchhhCCeee
Confidence 4899999999999999999999999987655443
No 21
>PRK07094 biotin synthase; Provisional
Probab=95.19 E-value=0.027 Score=48.29 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=32.9
Q ss_pred ccceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 3 ESSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 3 ks~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
.+++|+|+ |||.+++.++++-+++.+++.+.+..|.
T Consensus 182 ~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~ 218 (323)
T PRK07094 182 GSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFI 218 (323)
T ss_pred cceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccc
Confidence 57899999 9999999999999999999998887754
No 22
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=95.13 E-value=0.024 Score=49.31 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=24.5
Q ss_pred CccceeeecCCCHHHHHHHHHHHHHcC
Q psy6794 2 RESSIMLGLGETDAEVQQTLDDLLAAG 28 (165)
Q Consensus 2 ~ks~~m~glge~~~ev~~~~~dl~~~~ 28 (165)
+.|++|+|+|||++++.+.|..|++.+
T Consensus 165 ~~s~~i~G~gEt~ed~~~~l~~lr~Lq 191 (322)
T TIGR03550 165 FTTGILIGIGETREERAESLLAIRELH 191 (322)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999998866
No 23
>PRK07360 FO synthase subunit 2; Reviewed
Probab=94.64 E-value=0.029 Score=49.81 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=31.9
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
-||+|+|+|||+++..+.|..|++.+++...++-++
T Consensus 218 ~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fI 253 (371)
T PRK07360 218 TSTMMYGHVETPEHRIDHLLILREIQQETGGITEFV 253 (371)
T ss_pred eeeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEE
Confidence 489999999999999999999999999986666544
No 24
>PRK06267 hypothetical protein; Provisional
Probab=94.46 E-value=0.056 Score=47.71 Aligned_cols=37 Identities=30% Similarity=0.576 Sum_probs=32.3
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCC
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPT 41 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps 41 (165)
+|+|+|+||+.+|+.++++-|++.++|.+.+.- |.|.
T Consensus 171 ~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~-L~P~ 207 (350)
T PRK06267 171 ITIILGLGETEDDIEKLLNLIEELDLDRITFYS-LNPQ 207 (350)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEe-eeEC
Confidence 789999999999999999999999999887765 3443
No 25
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=94.29 E-value=0.056 Score=48.45 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=32.4
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcC-CCeeeeeecc
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAG-VDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~-~d~~tigqyl 38 (165)
||.+||||||.++-++.+..|++.. .|.|.|....
T Consensus 197 sGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~ 232 (335)
T COG0502 197 SGGIVGLGETVEDRAELLLELANLPTPDSVPINFLN 232 (335)
T ss_pred cceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeec
Confidence 8999999999999999999999999 9999988654
No 26
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=94.26 E-value=0.065 Score=45.03 Aligned_cols=37 Identities=22% Similarity=0.147 Sum_probs=31.8
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCC
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPT 41 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps 41 (165)
+++|+|+|||.+++.++++.|++.|++.+.+.-+ .|.
T Consensus 176 ~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l-~p~ 212 (296)
T TIGR00433 176 SGGIFGLGETVEDRIGLALALANLPPESVPINFL-VKI 212 (296)
T ss_pred EeEEEeCCCCHHHHHHHHHHHHhCCCCEEEeeee-EEc
Confidence 6789999999999999999999999998776654 443
No 27
>PRK08444 hypothetical protein; Provisional
Probab=94.12 E-value=0.05 Score=48.52 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=29.5
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
=||+|+|+|||.+|..+.|..||+.+++..-|.
T Consensus 206 ~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~ 238 (353)
T PRK08444 206 NATMLFGHIENREHRIDHMLRLRDLQDKTGGFN 238 (353)
T ss_pred cceeEEecCCCHHHHHHHHHHHHHhccccCCce
Confidence 389999999999999999999999999875544
No 28
>PRK05927 hypothetical protein; Provisional
Probab=93.80 E-value=0.049 Score=48.44 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=28.1
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
=||+|+|+|||+++..+.|..||+.+-++.-|+
T Consensus 202 ~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~~gf~ 234 (350)
T PRK05927 202 TATMMFGHVESPEDILLHLQTLRDAQDENPGFY 234 (350)
T ss_pred CceeEEeeCCCHHHHHHHHHHHHHhhHhhCCee
Confidence 489999999999999999999999995554333
No 29
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=93.60 E-value=0.056 Score=47.26 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=30.1
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
-||+|+|+|||.+++.+.+.-|++.+++...++-+
T Consensus 196 ~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~ 230 (343)
T TIGR03551 196 TATIMYGHVETPEHWVDHLLILREIQEETGGFTEF 230 (343)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEE
Confidence 37899999999999999999999999986555443
No 30
>PRK05926 hypothetical protein; Provisional
Probab=93.21 E-value=0.098 Score=46.93 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=32.3
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
||+|.|+|||.+|..+-|..||+.++|..-|+-|.
T Consensus 225 sgmi~G~gEt~edrv~~l~~Lr~Lq~~t~gf~~fI 259 (370)
T PRK05926 225 ATMLCYHRETPEDIVTHMSKLRALQDKTSGFKNFI 259 (370)
T ss_pred CceEEeCCCCHHHHHHHHHHHHhcCCccCCeeeeE
Confidence 78999999999999999999999999988777665
No 31
>PLN02389 biotin synthase
Probab=92.73 E-value=0.13 Score=46.36 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.7
Q ss_pred cceeeecCCCHHHHHHHHHHHHHc--CCCeeeee
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAA--GVDCVTLG 35 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~--~~d~~tig 35 (165)
||+|+|||||++++.+.+..|++. ++|.+.|.
T Consensus 231 sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~ 264 (379)
T PLN02389 231 SGGIIGLGEAEEDRVGLLHTLATLPEHPESVPIN 264 (379)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCCcEEecc
Confidence 699999999999999999999988 56766663
No 32
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=92.48 E-value=0.19 Score=43.51 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=31.1
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
+.+|+|| |||.+++.++++.+.+.++|.+.+.++
T Consensus 181 ~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l 215 (302)
T TIGR01212 181 SHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPL 215 (302)
T ss_pred EeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 5789999 999999999999999999999988653
No 33
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.38 E-value=0.19 Score=45.99 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=32.3
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.+|+|+ |||++++.++++-+.+.+.|.+.+-+|-
T Consensus 306 td~IvGfPgET~edf~~tl~~v~~l~~~~~~~f~ys 341 (449)
T PRK14332 306 TDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYS 341 (449)
T ss_pred EEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 5799998 9999999999999999999999888874
No 34
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=91.66 E-value=0.25 Score=44.45 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=32.4
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.+|+|+ |||++++.++++-+.+.+.+.+.+-.|.
T Consensus 290 ~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~s 325 (430)
T TIGR01125 290 TTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYS 325 (430)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeecc
Confidence 5689999 9999999999999999999999888875
No 35
>PRK08445 hypothetical protein; Provisional
Probab=91.59 E-value=0.14 Score=45.39 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=28.3
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
||+|+|+|||.++..+.+..|++.+++..-++
T Consensus 200 sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~ 231 (348)
T PRK08445 200 ATMMFGTVENDEEIIEHWERIRDLQDETGGFR 231 (348)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHhCCee
Confidence 78999999999999999999999999864333
No 36
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=91.54 E-value=0.28 Score=43.80 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=31.2
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.+|+|| |||+|++.++++-+.+.+.|.+.+-.|.
T Consensus 293 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~s 328 (414)
T TIGR01579 293 TDIIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYS 328 (414)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecC
Confidence 5689999 9999999999999999999988877653
No 37
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=91.41 E-value=0.21 Score=43.33 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=23.8
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCC
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGV 29 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~ 29 (165)
.+++|+|+|||++++.+.|..|++.+.
T Consensus 170 ~~~~i~G~gEt~ed~~~~l~~l~~l~~ 196 (336)
T PRK06245 170 TTGILIGIGETWEDRAESLEAIAELHE 196 (336)
T ss_pred eeeeeeECCCCHHHHHHHHHHHHHHHH
Confidence 478999999999999999888888754
No 38
>PRK09234 fbiC FO synthase; Reviewed
Probab=91.23 E-value=0.24 Score=49.12 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=31.1
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHc-----CCCeeeeeecc
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAA-----GVDCVTLGQYM 38 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~-----~~d~~tigqyl 38 (165)
=||+|+|+|||.+|..+.|..||+. |++-+.+.-|+
T Consensus 235 tsG~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~ 275 (843)
T PRK09234 235 TTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFR 275 (843)
T ss_pred cceEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccc
Confidence 3899999999999999999999998 67767766665
No 39
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=90.79 E-value=0.41 Score=36.25 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=32.6
Q ss_pred ccceeeecC-CCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 3 ESSIMLGLG-ETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 3 ks~~m~glg-e~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.++|+|++ ++.+++.+.++-+++.|++-+.+.+|.
T Consensus 154 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 190 (216)
T smart00729 154 STDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLS 190 (216)
T ss_pred EEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeee
Confidence 467899996 999999999999999999999999887
No 40
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=90.68 E-value=0.33 Score=43.54 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=32.3
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeeccC
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYMQ 39 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl~ 39 (165)
+.+|+|+ |||++++.++++-+.+.+.|.+.+-.|..
T Consensus 294 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp 330 (429)
T TIGR00089 294 TDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSP 330 (429)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCC
Confidence 4689998 99999999999999999999888877653
No 41
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=90.23 E-value=0.43 Score=43.00 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=31.7
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
+.+|+|+ |||++++.++++-+.+.+.+.+.+-.|
T Consensus 288 ~~~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~ 322 (420)
T TIGR01578 288 TDIIVGFPTETDDDFEETMELLRKYRPEKINITKF 322 (420)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 5699999 999999999999999999999888877
No 42
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=88.04 E-value=0.68 Score=42.03 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=30.9
Q ss_pred ccceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 3 ESSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 3 ks~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
..++|+|+ |||.+++.++++-+.+.+.+.+++..+
T Consensus 340 ~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l 375 (472)
T TIGR03471 340 HGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLA 375 (472)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeec
Confidence 35789998 999999999999999999998887654
No 43
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.02 E-value=0.72 Score=41.72 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=29.6
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
+.+|+|+ |||++++.++++-+.+.+.|.+.+-.|
T Consensus 300 ~d~IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~ 334 (437)
T PRK14331 300 TDIIVGFPTETEEDFEETLDVLKKVEFEQVFSFKY 334 (437)
T ss_pred cCEEEECCCCCHHHHHHHHHHHHhcCcceeeeeEe
Confidence 4589997 999999999999999999987666555
No 44
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.01 E-value=0.76 Score=42.00 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=32.0
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.||+|+ |||++++.++++-+.+.+.+.+.+-.|.
T Consensus 310 ~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ys 345 (459)
T PRK14338 310 TDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYS 345 (459)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecC
Confidence 4589998 9999999999999999999999888886
No 45
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=87.99 E-value=0.72 Score=41.66 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=31.1
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.+|+|+ |||++++.++++-+.+.+.+.+.+-+|.
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~s 339 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYS 339 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeecc
Confidence 4689998 9999999999999999999988777665
No 46
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=87.71 E-value=0.81 Score=41.40 Aligned_cols=34 Identities=32% Similarity=0.493 Sum_probs=30.9
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
+.||+|+ |||++++.++++-+.+.+.|.+.+-+|
T Consensus 302 ~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~ 336 (438)
T TIGR01574 302 TDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIY 336 (438)
T ss_pred eCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEe
Confidence 4689998 999999999999999999998877776
No 47
>PRK09234 fbiC FO synthase; Reviewed
Probab=87.28 E-value=0.6 Score=46.36 Aligned_cols=33 Identities=18% Similarity=0.054 Sum_probs=28.8
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
=||+|+|+|||.++..+.|..||+.+++..-+.
T Consensus 683 ~stmm~G~~Et~edrv~hl~~LreLq~~tgGf~ 715 (843)
T PRK09234 683 SSTMMYGHVDTPRHWVAHLRVLRDIQDRTGGFT 715 (843)
T ss_pred ccceEEcCCCCHHHHHHHHHHHHhcCcccCCee
Confidence 489999999999999999999999999854333
No 48
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=87.07 E-value=0.93 Score=41.23 Aligned_cols=35 Identities=37% Similarity=0.491 Sum_probs=31.1
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.+|+|+ |||++++.++++-+++.++|.+.+-.|.
T Consensus 301 t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ys 336 (440)
T PRK14862 301 STFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYS 336 (440)
T ss_pred ccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeec
Confidence 5789997 9999999999999999999988776653
No 49
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=85.88 E-value=1.1 Score=41.23 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=31.2
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeeccCC
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYMQP 40 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl~p 40 (165)
.++|+|+ |||.+++.++++-+.+.+.|.+.+. .+.|
T Consensus 341 ~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~-~~tP 377 (497)
T TIGR02026 341 AQFITGFENETDETFEETYRQLLDWDPDQANWL-MYTP 377 (497)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHcCCCceEEE-EecC
Confidence 4689998 9999999999999999999988885 3444
No 50
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=85.65 E-value=1.2 Score=41.40 Aligned_cols=34 Identities=35% Similarity=0.506 Sum_probs=30.1
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
+.||+|+ |||++++.++++-+.+.+.|.+.+-+|
T Consensus 312 ~~~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~ 346 (502)
T PRK14326 312 TDIIVGFPGETEEDFQATLDVVREARFSSAFTFQY 346 (502)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEee
Confidence 4589998 999999999999999999997766665
No 51
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=85.31 E-value=1.2 Score=41.54 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=31.2
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
..+|+|| |||.+++.++++.+.+.++|-+++-.+
T Consensus 324 ~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L 358 (488)
T PRK08207 324 MDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTL 358 (488)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEec
Confidence 4689998 999999999999999999999998875
No 52
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=84.78 E-value=1.4 Score=40.04 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=31.4
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.||+|| |||++++.++++-+.+.+.|.+.+-.|.
T Consensus 292 ~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ys 327 (440)
T PRK14334 292 TDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYS 327 (440)
T ss_pred EeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEee
Confidence 4588997 9999999999999999999988888775
No 53
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=83.99 E-value=1.3 Score=40.05 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=29.8
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.+|+|+ |||++++.++++-+.+.+.+.+.+-.|.
T Consensus 302 ~d~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~s 337 (439)
T PRK14328 302 TDIIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYS 337 (439)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcCCCcccceEec
Confidence 4589997 9999999999999999998876655553
No 54
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=83.82 E-value=0.76 Score=40.92 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=24.5
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcCCC
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAGVD 30 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~~d 30 (165)
||+|+||||+.+|+++++..|+..+++
T Consensus 221 ~g~i~Glge~~~d~~~~a~~l~~L~~~ 247 (371)
T PRK09240 221 LGALLGLSDWRTDALMTALHLRYLQRK 247 (371)
T ss_pred eEEEecCCccHHHHHHHHHHHHHHHHh
Confidence 899999999999999999988888775
No 55
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=83.29 E-value=1.4 Score=38.78 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=29.5
Q ss_pred ceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 5 SIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 5 ~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
.+|+|| |||.+++.++++.+.+.+++.+++-.+
T Consensus 156 dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l 189 (377)
T PRK08599 156 DLIYALPGQTIEDFKESLAKALALDIPHYSAYSL 189 (377)
T ss_pred eeecCCCCCCHHHHHHHHHHHHccCCCEEeeece
Confidence 589999 999999999999999999998877653
No 56
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=83.23 E-value=1.4 Score=38.65 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=29.9
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
..+|+|| |||.+++.++++.+.+.+++-+++=.
T Consensus 154 ~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~ 187 (374)
T PRK05799 154 VDLMFGLPNQTLEDWKETLEKVVELNPEHISCYS 187 (374)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 3689998 99999999999999999999888765
No 57
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=82.32 E-value=1.3 Score=32.92 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=30.4
Q ss_pred ccceeeecCCCH-HHHHHHHHHHHHcC-CCeeeeeeccCC
Q psy6794 3 ESSIMLGLGETD-AEVQQTLDDLLAAG-VDCVTLGQYMQP 40 (165)
Q Consensus 3 ks~~m~glge~~-~ev~~~~~dl~~~~-~d~~tigqyl~p 40 (165)
.+.+|+|+++.+ +++.+.++++.+.+ ++.+.+.+|..-
T Consensus 142 ~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~ 181 (204)
T cd01335 142 STTLLVGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPE 181 (204)
T ss_pred eEEEEEecCCChhHHHHHHHHHHHhhcCcchhhhhhhccc
Confidence 467888888886 88888888888888 888888777643
No 58
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=79.47 E-value=2.6 Score=37.68 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=30.9
Q ss_pred ceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 5 SIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 5 ~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
-+|+|| |+|.+++.++++.+.+.+.+-+++-.+.
T Consensus 177 dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~ 211 (394)
T PRK08898 177 DLMYALPGQTLDEALADVETALAFGPPHLSLYHLT 211 (394)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeE
Confidence 489999 9999999999999999999988888754
No 59
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=79.44 E-value=3 Score=37.99 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=29.1
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
+.+|+|+ |||++++.++++-+.+.+.+.+-+=.|
T Consensus 304 ~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~y 338 (446)
T PRK14337 304 TDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCY 338 (446)
T ss_pred EeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEec
Confidence 5689997 999999999999999999986655444
No 60
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=79.22 E-value=2.2 Score=39.72 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=28.6
Q ss_pred cceeeecCCCHHHHHHHHHHHHHc------CCCeeeeeeccCCC
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAA------GVDCVTLGQYMQPT 41 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~------~~d~~tigqyl~ps 41 (165)
||+++||||+.+|++..+..++.. |++.+.+- -|+|.
T Consensus 238 ~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvp-rl~P~ 280 (469)
T PRK09613 238 IGVLFGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVP-RLRPA 280 (469)
T ss_pred eEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCCcccccc-ceecC
Confidence 799999999999999998888766 45545543 66774
No 61
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=78.64 E-value=2.5 Score=37.11 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=29.5
Q ss_pred ceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 5 SIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 5 ~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
.+|+|| |||.+++.++++.+.+.|++-+++-.+
T Consensus 156 dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l 189 (360)
T TIGR00539 156 DLMYGLPLQTLNSLKEELKLAKELPINHLSAYAL 189 (360)
T ss_pred eccCCCCCCCHHHHHHHHHHHHccCCCEEEeecc
Confidence 469998 999999999999999999998888764
No 62
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=76.11 E-value=2.8 Score=37.90 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=24.9
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcCCCe
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAGVDC 31 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~~d~ 31 (165)
..|+|||||+|.++.++|...+.-|-.+
T Consensus 191 ihliVglGesD~~~ve~~~~v~~~g~~v 218 (339)
T COG2516 191 IHLIVGLGESDKDIVETIKRVRKRGGIV 218 (339)
T ss_pred eeEEeccCCchHHHHHHHHHHHhcCceE
Confidence 3689999999999999999999888665
No 63
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=74.84 E-value=4.7 Score=36.86 Aligned_cols=35 Identities=31% Similarity=0.556 Sum_probs=31.4
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.||+|+ |||++++.++++-+.+.+.|.+.+-.|.
T Consensus 313 ~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~s 348 (455)
T PRK14335 313 TDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYN 348 (455)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 5689995 9999999999999999999998887764
No 64
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=72.79 E-value=1.1 Score=39.39 Aligned_cols=41 Identities=20% Similarity=0.481 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCCeeeeee----ccCCCCCCCccccccccc
Q psy6794 14 DAEVQQTLDDLLAAGVDCVTLGQ----YMQPTKKHLKVSYRETFV 54 (165)
Q Consensus 14 ~~ev~~~~~dl~~~~~d~~tigq----yl~ps~~h~~v~~~~~fV 54 (165)
.+++.+-|+.++++|+++|+||- .|+|+..++.-..++++|
T Consensus 9 ~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l 53 (374)
T PF02449_consen 9 EEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVL 53 (374)
T ss_dssp CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHH
Confidence 36788889999999999999973 489999877654333333
No 65
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=72.20 E-value=5 Score=35.87 Aligned_cols=30 Identities=37% Similarity=0.528 Sum_probs=27.1
Q ss_pred ceeeec-CCCHHHHHHHHHHHHHcCCCeeee
Q psy6794 5 SIMLGL-GETDAEVQQTLDDLLAAGVDCVTL 34 (165)
Q Consensus 5 ~~m~gl-ge~~~ev~~~~~dl~~~~~d~~ti 34 (165)
=|++|| |||.+|.++|++-+...|||=+.|
T Consensus 187 HiI~GLPgE~~~~mleTak~v~~~~v~GIKl 217 (312)
T COG1242 187 HLINGLPGETRDEMLETAKIVAELGVDGIKL 217 (312)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 378898 999999999999999999997766
No 66
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.03 E-value=5.7 Score=36.89 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=32.9
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeeccC
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYMQ 39 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl~ 39 (165)
|-|+||+ |||+|+..+||+=+.+++-|.+-+=+|-.
T Consensus 300 tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSp 336 (437)
T COG0621 300 TDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSP 336 (437)
T ss_pred ccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCC
Confidence 6789998 99999999999999999999998888853
No 67
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=71.97 E-value=4.9 Score=36.07 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=28.8
Q ss_pred ceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 5 SIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 5 ~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
-+|+|| |||.+.+.++++.+.+.+.+-+++-.+
T Consensus 171 dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L 204 (400)
T PRK07379 171 DLISGLPHQTLEDWQASLEAAIALNPTHLSCYDL 204 (400)
T ss_pred EeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecc
Confidence 479998 799999999999999999998887654
No 68
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=71.76 E-value=5.8 Score=36.42 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=31.4
Q ss_pred cceeee-cCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLG-LGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~g-lge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.||+| =|||++++.++++-+++.+.|.+.+-.|.
T Consensus 328 ~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~s 363 (467)
T PRK14329 328 TDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYS 363 (467)
T ss_pred EeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEec
Confidence 468999 59999999999999999999988887776
No 69
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=70.23 E-value=3 Score=37.07 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=23.1
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCC
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGV 29 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~ 29 (165)
.+|+|+||||+.++.+.+...|+..++
T Consensus 219 ~~g~i~Gl~e~~~d~~~~a~~l~~L~~ 245 (366)
T TIGR02351 219 GIGALLGLDDWRTDAFFTAYHLRYLQK 245 (366)
T ss_pred ceeEEEeCchhHHHHHHHHHHHHHHHH
Confidence 689999999999999998888777666
No 70
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=69.39 E-value=7.7 Score=35.08 Aligned_cols=35 Identities=20% Similarity=0.502 Sum_probs=31.1
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.+|+|+ |||+++..++++-+.+.+.|.+.+-.|.
T Consensus 279 ~d~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ys 314 (418)
T PRK14336 279 TDLIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYS 314 (418)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecC
Confidence 4689995 9999999999999999999988887765
No 71
>PF08219 TOM13: Outer membrane protein TOM13; InterPro: IPR013262 The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins [].; GO: 0005741 mitochondrial outer membrane
Probab=68.11 E-value=0.9 Score=33.00 Aligned_cols=10 Identities=50% Similarity=0.806 Sum_probs=8.5
Q ss_pred ceeeecCCCH
Q psy6794 5 SIMLGLGETD 14 (165)
Q Consensus 5 ~~m~glge~~ 14 (165)
|+|||+||=.
T Consensus 47 G~MLGFGEl~ 56 (77)
T PF08219_consen 47 GMMLGFGELF 56 (77)
T ss_pred hhhHhHHHHH
Confidence 8999999854
No 72
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=66.99 E-value=9.1 Score=35.01 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=30.7
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.||+|+ |||+++..++++-+++.+.|.+.+-.|.
T Consensus 303 td~IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~s 338 (445)
T PRK14340 303 TDLIAGFCGETEEDHRATLSLMEEVRFDSAFMFYYS 338 (445)
T ss_pred ccEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEEec
Confidence 5689995 9999999999999999999988777654
No 73
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=66.47 E-value=9 Score=35.97 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=30.6
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.||+|+ |||++++.++++-+++.+.|.+.+-.|.
T Consensus 367 tdiIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ys 402 (509)
T PRK14327 367 TDIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYS 402 (509)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeee
Confidence 3589995 9999999999999999999988877663
No 74
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=66.23 E-value=9.4 Score=34.47 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=31.7
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.+|+|+ |||++++.++++-+.+.+.|.+.+-.|.
T Consensus 295 ~d~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~s 330 (434)
T PRK14330 295 SDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYS 330 (434)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeecc
Confidence 4589995 9999999999999999999999888775
No 75
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=64.34 E-value=8.9 Score=34.07 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=27.3
Q ss_pred eeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 6 IMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 6 ~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+|.|| |+|.+.+.++++.+.+.++|-+++=.+.
T Consensus 160 li~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~ 193 (380)
T PRK09057 160 LIYARPGQTLAAWRAELKEALSLAADHLSLYQLT 193 (380)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCeEEeecce
Confidence 58898 8999999999999999888877776543
No 76
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=63.50 E-value=11 Score=27.24 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=27.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeee--ccCCCC
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQ--YMQPTK 42 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigq--yl~ps~ 42 (165)
||=+..-|...++.|++.|++|.+..+ |.=|..
T Consensus 29 LgiSRtaVwK~Iq~Lr~~G~~I~s~~~kGY~L~~~ 63 (79)
T COG1654 29 LGISRTAVWKHIQQLREEGVDIESVRGKGYLLPQL 63 (79)
T ss_pred HCccHHHHHHHHHHHHHhCCceEecCCCceeccCc
Confidence 566777899999999999999999988 655543
No 77
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=61.96 E-value=12 Score=33.19 Aligned_cols=34 Identities=6% Similarity=0.108 Sum_probs=27.1
Q ss_pred ceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 5 SIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 5 ~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
.+|+|| |||.+++.++++.+.+.+.+-+++-.|.
T Consensus 159 dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~ 193 (353)
T PRK05904 159 DFLYCLPILKLKDLDEVFNFILKHKINHISFYSLE 193 (353)
T ss_pred EEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeE
Confidence 468885 8999999999999999988877666543
No 78
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=61.31 E-value=11 Score=34.50 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=29.8
Q ss_pred ceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 5 SIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 5 ~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
-+|+|| |||.+++.++++.+.+.+++-+++=.+.
T Consensus 203 DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~ 237 (433)
T PRK08629 203 DLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLM 237 (433)
T ss_pred EEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccce
Confidence 378896 8999999999999999999988886554
No 79
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=61.26 E-value=7.7 Score=33.93 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=24.1
Q ss_pred ccceeeec-CCCHHHHHHH---HHHHHHcCCC
Q psy6794 3 ESSIMLGL-GETDAEVQQT---LDDLLAAGVD 30 (165)
Q Consensus 3 ks~~m~gl-ge~~~ev~~~---~~dl~~~~~d 30 (165)
+-++|+|+ |||++++.++ ++.+...|..
T Consensus 354 ~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~ 385 (490)
T COG1032 354 KLYFIVGLPGETEEDVKETIELAKFIKKLGPK 385 (490)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHhCcc
Confidence 34689999 6888899998 8999999998
No 80
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=61.26 E-value=12 Score=34.13 Aligned_cols=33 Identities=33% Similarity=0.414 Sum_probs=28.9
Q ss_pred ceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 5 SIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 5 ~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
-+|.|| |+|.+.+.++++.+.+.+.|-+++-++
T Consensus 219 DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L 252 (449)
T PRK09058 219 DLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYAL 252 (449)
T ss_pred EEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 378886 899999999999999999998888774
No 81
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=60.82 E-value=14 Score=33.69 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=30.5
Q ss_pred cceeee-cCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLG-LGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~g-lge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.+|+| =|||+++..++++-+.+.+.|.+.+-.|.
T Consensus 310 ~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~s 345 (448)
T PRK14333 310 ADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYS 345 (448)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeee
Confidence 458999 49999999999999999999988777664
No 82
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=60.45 E-value=11 Score=33.03 Aligned_cols=32 Identities=3% Similarity=0.021 Sum_probs=25.9
Q ss_pred eeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 6 IMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 6 ~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
+|+|| |+|.+++.++++.+.+.+++-+++-+|
T Consensus 155 li~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L 187 (350)
T PRK08446 155 LIYDTPLDNKKLLKEELKLAKELPINHLSAYSL 187 (350)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCEEEeccc
Confidence 67775 788888888888888888888877663
No 83
>PF10582 Connexin_CCC: Gap junction channel protein cysteine-rich domain; InterPro: IPR019570 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. This entry represents the cysteine rich domain of the connexins.; PDB: 2ZW3_F.
Probab=57.18 E-value=4.5 Score=28.44 Aligned_cols=19 Identities=26% Similarity=0.740 Sum_probs=13.8
Q ss_pred cccccccCCCCccccccCC
Q psy6794 110 HTVCEEARCPNIGECWGGG 128 (165)
Q Consensus 110 ~TVCeeA~CPNi~EC~~~g 128 (165)
.-+|+...|||.-+||-++
T Consensus 20 ~~~C~~~PCp~~VdCfVSR 38 (67)
T PF10582_consen 20 LYKCDRSPCPNTVDCFVSR 38 (67)
T ss_dssp EEEE--TTSSSSEEEE-SS
T ss_pred eeEeCCCCCCCcceEeCCC
Confidence 3579999999999999865
No 84
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=54.85 E-value=18 Score=26.64 Aligned_cols=31 Identities=6% Similarity=0.175 Sum_probs=27.2
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeeeeeccC
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTLGQYMQ 39 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~tigqyl~ 39 (165)
+-|+|.+++.++++.+++.|+.++.|...-.
T Consensus 70 ~~g~t~~~~~~~~~~~~~~~~~vi~it~~~~ 100 (153)
T cd05009 70 PEDRLEEKLESLIKEVKARGAKVIVITDDGD 100 (153)
T ss_pred cCChhHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 3688999999999999999999999987643
No 85
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=53.07 E-value=22 Score=32.15 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=29.1
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.+|+|+ |||++++.++++-+.+.+.+.+.+-.|.
T Consensus 285 ~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~s 320 (420)
T PRK14339 285 TDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYS 320 (420)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecC
Confidence 3589995 9999999999999999999866655543
No 86
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=52.88 E-value=30 Score=22.97 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=24.8
Q ss_pred ccceeeec---CCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 3 ESSIMLGL---GETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 3 ks~~m~gl---ge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
+..+.+++ |+| .|+.++++-+++.|+.++.|.
T Consensus 47 ~~d~~i~iS~sg~t-~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 47 KGDVVIALSYSGRT-EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCEEEEEECCCCC-HHHHHHHHHHHHcCCeEEEEe
Confidence 34455555 555 669999999999999998876
No 87
>KOG4730|consensus
Probab=51.11 E-value=60 Score=31.01 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccccCCcccccc
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTK 90 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rKP~WLRvs 90 (165)
=+|++|+.+...+.+++|-.|.+.|-=..|++--.+= .=+|+. +.+. +.. .+ -|+-+++.
T Consensus 56 P~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl--------~~ln-kVv---~~-----dpe~~tvT 115 (518)
T KOG4730|consen 56 PKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISL--------DKLN-KVV---EF-----DPELKTVT 115 (518)
T ss_pred CCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEh--------hhhc-cce---ee-----CchhceEE
Confidence 4799999999999999999999999445555432221 233331 1222 222 12 24557899
Q ss_pred CCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccc
Q psy6794 91 IPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNI 148 (165)
Q Consensus 91 ~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~ 148 (165)
+.+|-++.++...++++||. -||.+-=|+. +|-|++.+|+|.-
T Consensus 116 V~aGirlrQLie~~~~~Gls-------L~~~~si~e~--------sVgGii~TGaHGS 158 (518)
T KOG4730|consen 116 VQAGIRLRQLIEELAKLGLS-------LPNAPSISEQ--------SVGGIISTGAHGS 158 (518)
T ss_pred eccCcCHHHHHHHHHhcCcc-------ccCCCceecc--------eeeeEEecccCCC
Confidence 99999999999999999996 5888877764 4556667888874
No 88
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=50.85 E-value=20 Score=28.02 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=29.9
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
|--+++==|.+.+++.+.-+.|+++||.+++||-.
T Consensus 108 kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~ 142 (165)
T cd01481 108 QFLVLITGGKSQDDVERPAVALKRAGIVPFAIGAR 142 (165)
T ss_pred eEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC
Confidence 34466777899999999999999999999999964
No 89
>PRK12276 putative heme peroxidase; Provisional
Probab=50.28 E-value=37 Score=29.40 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=38.3
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccC
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQ 56 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~ 56 (165)
=++++.+++.++..+|+.. .||+||.|+-.-+.|.+...|+.+
T Consensus 74 ~~~~~~~~lq~~~~~~~~t-----~lg~~l~p~~S~vsv~e~s~Y~~~ 116 (248)
T PRK12276 74 ILRPTMEELNEIENELNKT-----RLADYLIPAYSYVSVVELSNYLAS 116 (248)
T ss_pred EeCCCHHHHHHHHHHHHhc-----ccccccccceeEEEEEeecccccc
Confidence 4799999999999999983 699999999999999888899874
No 90
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=50.18 E-value=25 Score=30.96 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHcC-CCeeee--eeccCC
Q psy6794 11 GETDAEVQQTLDDLLAAG-VDCVTL--GQYMQP 40 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~-~d~~ti--gqyl~p 40 (165)
|.|.+|.++.++.|.++| +|+++| |.|.++
T Consensus 224 G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~ 256 (343)
T cd04734 224 GLSPDEALEIAARLAAEGLIDYVNVSAGSYYTL 256 (343)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcc
Confidence 578899999999999998 899887 666655
No 91
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=49.98 E-value=16 Score=33.14 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.8
Q ss_pred cceeeecCCCHHHHHHHHHHHHHc
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAA 27 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~ 27 (165)
+++|+|-|||.+|+...|..||+.
T Consensus 217 atml~Gh~E~~ed~~~hl~~ir~l 240 (370)
T COG1060 217 ATMLLGHVETREDRIDHLEHIRDL 240 (370)
T ss_pred ceeEEEecCCHHHHHHHHHHHHHH
Confidence 678999999999999999999864
No 92
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=49.40 E-value=26 Score=23.86 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=32.7
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCC
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKK 43 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~ 43 (165)
|++|++-+......+.++++-++++|++|..|. .+|..+
T Consensus 1 ~~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~--s~p~~~ 39 (80)
T cd04905 1 KTSIVFTLPNKPGALYDVLGVFAERGINLTKIE--SRPSKG 39 (80)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCcCEEEEE--EEEcCC
Confidence 577888887778889999999999999999995 666644
No 93
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=48.17 E-value=23 Score=33.60 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=26.0
Q ss_pred ceeeec-CCCHHHHHHHHHHHHH---cCCCeeeeee
Q psy6794 5 SIMLGL-GETDAEVQQTLDDLLA---AGVDCVTLGQ 36 (165)
Q Consensus 5 ~~m~gl-ge~~~ev~~~~~dl~~---~~~d~~tigq 36 (165)
-||.|| |+|.+...++++.+.+ .+.|.+.|-.
T Consensus 261 ~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiyp 296 (522)
T TIGR01211 261 HIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYP 296 (522)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEec
Confidence 378897 8999999999998875 7888777754
No 94
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=47.91 E-value=17 Score=27.81 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.4
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 8 LGLGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 8 ~glge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
+==|.+.+++.+.-++|++.|+.+.+||=
T Consensus 110 lTDG~~~~~~~~~a~~lk~~gi~i~~ig~ 138 (164)
T cd01482 110 ITDGKSQDDVELPARVLRNLGVNVFAVGV 138 (164)
T ss_pred EcCCCCCchHHHHHHHHHHCCCEEEEEec
Confidence 33366777888888999999999999984
No 95
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=45.32 E-value=1.1e+02 Score=27.43 Aligned_cols=95 Identities=17% Similarity=0.133 Sum_probs=57.5
Q ss_pred eeeec-CC-CHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccccC
Q psy6794 6 IMLGL-GE-TDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLRL 83 (165)
Q Consensus 6 ~m~gl-ge-~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rK 83 (165)
+++++ |. +.+++.+..+.+.++|+|.+.|-=+--.+.. -......+.. .++...+.-..++. ...+
T Consensus 102 ~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~---~~~~g~~~~~---~~~~~~~i~~~v~~------~~~~ 169 (420)
T PRK08318 102 LIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMS---ERGMGSAVGQ---VPELVEMYTRWVKR------GSRL 169 (420)
T ss_pred EEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcc---ccCCcccccC---CHHHHHHHHHHHHh------ccCC
Confidence 67774 76 7899999999999999999888644322110 0101112211 13333333322222 2457
Q ss_pred CccccccCCCCchHHHHHHHHhhcCccccc
Q psy6794 84 PPWLKTKIPTGSQFAKVKEQLRTLNLHTVC 113 (165)
Q Consensus 84 P~WLRvs~pag~~~~~V~~~l~~~~L~TVC 113 (165)
|=|+|++ |.-.++..+.+.+.+.|..-|+
T Consensus 170 Pv~vKl~-p~~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 170 PVIVKLT-PNITDIREPARAAKRGGADAVS 198 (420)
T ss_pred cEEEEcC-CCcccHHHHHHHHHHCCCCEEE
Confidence 8899987 4445688888888888876666
No 96
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=45.27 E-value=21 Score=21.35 Aligned_cols=15 Identities=33% Similarity=0.559 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCCee
Q psy6794 18 QQTLDDLLAAGVDCV 32 (165)
Q Consensus 18 ~~~~~dl~~~~~d~~ 32 (165)
.++++.|.++|||-+
T Consensus 10 ~~~~~~~l~~GVDgI 24 (30)
T PF13653_consen 10 PASWRELLDLGVDGI 24 (30)
T ss_dssp HHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHcCCCEe
Confidence 468899999999954
No 97
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=44.94 E-value=31 Score=24.80 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=26.7
Q ss_pred cceeeec---CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 4 SSIMLGL---GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 4 s~~m~gl---ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
-.+++++ |+|. |+.+.++.+++.|+.++.|...
T Consensus 47 ~d~~I~iS~sG~t~-e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 47 DTLVIAISQSGETA-DTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CcEEEEEeCCcCCH-HHHHHHHHHHHcCCeEEEEECC
Confidence 3345555 6666 5999999999999999999987
No 98
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=43.88 E-value=43 Score=28.46 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=31.0
Q ss_pred ceeeecC-CCHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLG-ETDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glg-e~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
.+|+|.| .+.+|+++..+...++|+|.+-+- -|.+||.
T Consensus 72 ~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~ 112 (288)
T cd00954 72 TLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSF 112 (288)
T ss_pred eEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCH
Confidence 5799998 478999999999999999976654 4666654
No 99
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=43.40 E-value=33 Score=28.80 Aligned_cols=26 Identities=15% Similarity=-0.057 Sum_probs=22.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
.+.+.+|+.+..+.|.++|+|.+++-
T Consensus 171 ~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 171 PYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 45788899999999999999988874
No 100
>PF09524 Phg_2220_C: Conserved phage C-terminus (Phg_2220_C); InterPro: IPR011741 This entry is represented by the C-terminal domain of Bacteriophage r1t, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=43.11 E-value=16 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeeeccCCCC
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLGQYMQPTK 42 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~ 42 (165)
|-|.|++..+++-..+.=-+--..-|||||+-
T Consensus 31 G~t~edf~~VID~k~~~W~~~~~m~~YLRP~T 62 (74)
T PF09524_consen 31 GYTLEDFKKVIDNKVAEWKGDPKMEKYLRPET 62 (74)
T ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHhcCchh
Confidence 66888888888877665444444678999974
No 101
>PRK00955 hypothetical protein; Provisional
Probab=42.75 E-value=33 Score=33.40 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=30.2
Q ss_pred cceeee-cCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCC
Q psy6794 4 SSIMLG-LGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTK 42 (165)
Q Consensus 4 s~~m~g-lge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~ 42 (165)
+.+|+| =|||++++.++++-+++.+.+.+.+-. +-|.+
T Consensus 482 ~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~-fTP~P 520 (620)
T PRK00955 482 PYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQD-FYPTP 520 (620)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHcCCCcceeee-eecCC
Confidence 468999 699999999999999999998665533 33444
No 102
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=42.74 E-value=33 Score=31.23 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=30.2
Q ss_pred ceeee-cCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 5 SIMLG-LGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 5 ~~m~g-lge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
.+|+| -|+|.+++.++++.+.+.|++-+++=.|.
T Consensus 207 dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~ 241 (453)
T PRK09249 207 DLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYA 241 (453)
T ss_pred EEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCc
Confidence 47888 49999999999999999999988887765
No 103
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=42.06 E-value=36 Score=24.31 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=26.3
Q ss_pred eeeecCCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 6 IMLGLGETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 6 ~m~glge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
|++-......|+.+.++.+++.|+.+++|..+
T Consensus 58 i~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 58 IIISYSGETRELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp EEEESSSTTHHHHHHHHHHHHTTSEEEEEESS
T ss_pred EeeeccccchhhhhhhHHHHhcCCeEEEEeCC
Confidence 45555666789999999999999999999854
No 104
>PF13985 YbgS: YbgS-like protein
Probab=41.61 E-value=12 Score=29.30 Aligned_cols=17 Identities=29% Similarity=0.849 Sum_probs=14.2
Q ss_pred ccccccccCCCCccccc
Q psy6794 109 LHTVCEEARCPNIGECW 125 (165)
Q Consensus 109 L~TVCeeA~CPNi~EC~ 125 (165)
-+|-|.+.+|||+..=-
T Consensus 88 KntmCKDGkCpd~nkKv 104 (122)
T PF13985_consen 88 KNTMCKDGKCPDINKKV 104 (122)
T ss_pred hcccccCCcCCCccccc
Confidence 37899999999997644
No 105
>PF15088 NADH_dh_m_C1: NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Probab=41.39 E-value=25 Score=23.47 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=19.2
Q ss_pred cccCCccccccCCCCchHHHHHHHHhhc
Q psy6794 80 RLRLPPWLKTKIPTGSQFAKVKEQLRTL 107 (165)
Q Consensus 80 ~~rKP~WLRvs~pag~~~~~V~~~l~~~ 107 (165)
...+|.|||+-+.-+.+..-.--+++.|
T Consensus 8 ~~~kPnWlkVGLtlGts~flW~~L~kqH 35 (49)
T PF15088_consen 8 PNAKPNWLKVGLTLGTSVFLWIYLIKQH 35 (49)
T ss_pred CCCCCChhheeeecchHHHHHHHHHHhh
Confidence 3568999999988776665544444444
No 106
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=41.33 E-value=50 Score=28.44 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=28.2
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
--+|+|.|.+.+|.++..+...++|+|.+.+-
T Consensus 77 ~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~ 108 (303)
T PRK03620 77 VPVIAGAGGGTAQAIEYAQAAERAGADGILLL 108 (303)
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 45799999999999999999999999977663
No 107
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=41.10 E-value=38 Score=29.78 Aligned_cols=34 Identities=35% Similarity=0.570 Sum_probs=28.9
Q ss_pred ceeee-cCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 5 SIMLG-LGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 5 ~~m~g-lge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
-+|+| =|||.+++.++++.+.+.+++-+++-.|.
T Consensus 164 dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~ 198 (375)
T PRK05628 164 DLIYGTPGESDDDWRASLDAALEAGVDHVSAYALI 198 (375)
T ss_pred EEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeee
Confidence 36888 48999999999999999999988876644
No 108
>PRK00957 methionine synthase; Provisional
Probab=40.77 E-value=27 Score=29.88 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCCeeeeeeccC
Q psy6794 14 DAEVQQTLDDLLAAGVDCVTLGQYMQ 39 (165)
Q Consensus 14 ~~ev~~~~~dl~~~~~d~~tigqyl~ 39 (165)
+++|.+++++-.++|+|++|=||+ |
T Consensus 35 ~~ai~~~v~~q~~~Gld~vtdGe~-r 59 (305)
T PRK00957 35 KPAIEEAVADQVKAGIDIISDGQV-R 59 (305)
T ss_pred HHHHHHHHHHHHHhCCCeecCCCc-c
Confidence 567889999999999999999999 5
No 109
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=40.01 E-value=46 Score=30.28 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=30.5
Q ss_pred cceeee-cCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLG-LGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~g-lge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
..||+| -|+|.+++.++++.+.+.|++-+++=.|.
T Consensus 206 ~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~ 241 (455)
T TIGR00538 206 IDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYA 241 (455)
T ss_pred EeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 357889 58999999999999999999988887763
No 110
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=39.85 E-value=58 Score=27.89 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=30.8
Q ss_pred cceeeecC-CCHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 4 SSIMLGLG-ETDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 4 s~~m~glg-e~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
--+|+|.| -+.+|.++..+...++|+|.+-+. -|..|+.
T Consensus 71 ~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~ 112 (290)
T TIGR00683 71 IALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSF 112 (290)
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCH
Confidence 35799998 588999999999999999976664 2555543
No 111
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]
Probab=39.12 E-value=9.9 Score=31.93 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=38.2
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccC
Q psy6794 8 LGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQ 56 (165)
Q Consensus 8 ~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~ 56 (165)
+|+|-..|+.+..|+| +.=+|++-|++|..++.+|+.-. .++-|..
T Consensus 74 IgrGF~pe~A~~LL~d--~~~levIdi~~~~~~~~~~l~R~-kgRIIG~ 119 (194)
T COG1094 74 IGRGFPPEKALKLLED--DYYLEVIDLKDVVTLSGDHLRRI-KGRIIGR 119 (194)
T ss_pred HhcCCCHHHHHHHhcC--CcEEEEEEHHHhccCchhhhhHh-hceeeCC
Confidence 6899999999999999 88899999999999999997642 2455543
No 112
>KOG4355|consensus
Probab=39.04 E-value=26 Score=33.09 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=33.1
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec-cCCC
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY-MQPT 41 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy-l~ps 41 (165)
+-|++|+ |||+|+..++|.-.++-...-|-|-|| =||.
T Consensus 343 TDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpG 382 (547)
T KOG4355|consen 343 TDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPG 382 (547)
T ss_pred eeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCC
Confidence 4577887 999999999999999999999999995 4664
No 113
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=38.80 E-value=51 Score=28.79 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=31.0
Q ss_pred ccceeeec---CCCHHHHHHHHHHHHHcCCCeeeeeeccCC
Q psy6794 3 ESSIMLGL---GETDAEVQQTLDDLLAAGVDCVTLGQYMQP 40 (165)
Q Consensus 3 ks~~m~gl---ge~~~ev~~~~~dl~~~~~d~~tigqyl~p 40 (165)
+..+.+++ |||.| ++++++-+++.|+.++.|..+-.-
T Consensus 92 ~~~lvI~iS~SGeT~e-~i~al~~ak~~Ga~~I~IT~~~~S 131 (340)
T PRK11382 92 DRCAVIGVSDYGKTEE-VIKALELGRACGALTAAFTKRADS 131 (340)
T ss_pred CCCEEEEEcCCCCCHH-HHHHHHHHHHcCCeEEEEECCCCC
Confidence 45678888 99875 999999999999999999876543
No 114
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=38.72 E-value=39 Score=22.93 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 13 TDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 13 ~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
..+++.+++++|.+...++-.+|.|
T Consensus 55 ~~~~~~~~l~~l~~~~~~~~~lG~y 79 (80)
T cd04905 55 EDPNVAEALEELKRLTEFVKVLGSY 79 (80)
T ss_pred CCHHHHHHHHHHHHhCCeEEEeeee
Confidence 4788999999999999999999999
No 115
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=38.66 E-value=56 Score=27.95 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=27.9
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeee
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTL 34 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~ti 34 (165)
+.-+|+|.|.+-+|.++..+...++|+|.+-+
T Consensus 74 ~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 74 KVPVYTGVGGNTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred CCcEEEecCccHHHHHHHHHHHHHhCCCEEEE
Confidence 34589999999999999999999999996655
No 116
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=38.63 E-value=48 Score=30.20 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=30.6
Q ss_pred ceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 5 SIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 5 ~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
.||+|| |+|.+++.++++.+.+.+++-+++-.|.
T Consensus 208 dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~ 242 (453)
T PRK13347 208 DLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYA 242 (453)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 378995 9999999999999999999999988775
No 117
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=38.38 E-value=30 Score=31.87 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=30.1
Q ss_pred ceeeecCCCHHHHH---HHHHHHHHcCCCeeee-----eeccCCC
Q psy6794 5 SIMLGLGETDAEVQ---QTLDDLLAAGVDCVTL-----GQYMQPT 41 (165)
Q Consensus 5 ~~m~glge~~~ev~---~~~~dl~~~~~d~~ti-----gqyl~ps 41 (165)
.|++|+++-+++|. ++|+.|-++|+.++.. +-|.|=.
T Consensus 70 ~Ik~g~~~rd~~Ienyk~~irNla~~GI~vicYNFMPv~dW~RT~ 114 (394)
T TIGR00695 70 AIKTGTGNYGRWIENYKQTLRNLAQCGIKTVCYNFMPVLDWTRTD 114 (394)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHcCCCEEEEEecccccccccc
Confidence 58999999998887 8999999999998764 4565543
No 118
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=38.36 E-value=28 Score=29.91 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCCeeeeeeccCCCC
Q psy6794 14 DAEVQQTLDDLLAAGVDCVTLGQYMQPTK 42 (165)
Q Consensus 14 ~~ev~~~~~dl~~~~~d~~tigqyl~ps~ 42 (165)
+++|.+++++-.++|+|++|=|++-|..-
T Consensus 36 ~~ai~~~v~~Q~~~GldiitDGe~~r~~~ 64 (332)
T cd03311 36 DDAIADAVKDQEEAGLDVVTDGEFRRSDM 64 (332)
T ss_pred HHHHHHHHHHHHHhCCCccccCCcccccH
Confidence 56788899999999999999999887553
No 119
>PF05504 Spore_GerAC: Spore germination B3/ GerAC like, C-terminal ; InterPro: IPR008844 The GerAA, -AB, and -AC proteins of the Bacillus subtilis spore are required for the germination response to L-alanine as the sole germinant. Members of GerAC family are thought to be located in the inner spore membrane. Although the function of this family is unclear, they are likely to encode the components of the germination apparatus that respond directly to this germinant, mediating the spore's response [].; GO: 0009847 spore germination, 0016020 membrane; PDB: 3N54_B.
Probab=38.20 E-value=13 Score=28.58 Aligned_cols=27 Identities=26% Similarity=0.568 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHH-HcCCCeeeeeeccCC
Q psy6794 14 DAEVQQTLDDLL-AAGVDCVTLGQYMQP 40 (165)
Q Consensus 14 ~~ev~~~~~dl~-~~~~d~~tigqyl~p 40 (165)
.+++.++++.+. +.++|++=||.|++-
T Consensus 107 ~~~~~~~i~k~q~~~~~D~lg~g~~~~~ 134 (171)
T PF05504_consen 107 KKEIQSLIKKMQKELGVDPLGFGEYLRR 134 (171)
T ss_dssp HHHHHHHHHHHHHTT----S-HHHHHHH
T ss_pred HHHHHHHHHHHhhhhCcChHHHHHHHHH
Confidence 357788899999 999999999999875
No 120
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=38.06 E-value=53 Score=19.42 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=24.0
Q ss_pred eecC--CCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 8 LGLG--ETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 8 ~glg--e~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+|.+ ++..-..+.++.|.++++++..+.|-.
T Consensus 6 ~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 6 VGVGMRGTPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred ECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4555 455667788899999999999998864
No 121
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=37.85 E-value=52 Score=23.67 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=25.0
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 8 LGLGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 8 ~glge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+...-...|+.++++-+++.|+.++.|...-
T Consensus 54 iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 54 ISNSGETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3444456789999999999999999998743
No 122
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=37.58 E-value=55 Score=27.59 Aligned_cols=40 Identities=23% Similarity=0.436 Sum_probs=31.3
Q ss_pred ccceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 3 ESSIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 3 ks~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
|.-+|+|.|. +-+|.++..+.+.++|+|-+-+. -|..||.
T Consensus 70 ~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~ 112 (289)
T PF00701_consen 70 RVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQ 112 (289)
T ss_dssp SSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCH
T ss_pred ceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchh
Confidence 3458999998 99999999999999999965544 4666665
No 123
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=37.51 E-value=46 Score=25.30 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=30.3
Q ss_pred cceeeecCCC-----HHHHHHHHHHHHHcCCCeeeee--eccCCC
Q psy6794 4 SSIMLGLGET-----DAEVQQTLDDLLAAGVDCVTLG--QYMQPT 41 (165)
Q Consensus 4 s~~m~glge~-----~~ev~~~~~dl~~~~~d~~tig--qyl~ps 41 (165)
-.+++|.|-. .++..+..+++.++|+|.+.+. -|..|+
T Consensus 49 ~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~ 93 (201)
T cd00945 49 VPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKE 93 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhC
Confidence 4578999987 4999999999999999987764 344554
No 124
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=37.40 E-value=46 Score=29.93 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=27.2
Q ss_pred eeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 6 IMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 6 ~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+|.|| |+|.+.+.++++.+.+.+++-+++=++.
T Consensus 167 lI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~ 200 (390)
T PRK06582 167 LIYARSGQTLKDWQEELKQAMQLATSHISLYQLT 200 (390)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCE
Confidence 58888 6889999999999999999877776543
No 125
>PF11181 YflT: Heat induced stress protein YflT
Probab=36.55 E-value=42 Score=24.44 Aligned_cols=24 Identities=21% Similarity=0.500 Sum_probs=21.5
Q ss_pred eeecCCCHHHHHHHHHHHHHcCCC
Q psy6794 7 MLGLGETDAEVQQTLDDLLAAGVD 30 (165)
Q Consensus 7 m~glge~~~ev~~~~~dl~~~~~d 30 (165)
++|.=++.+|+.+.+++|++.|.+
T Consensus 2 ~Igv~~~~~E~~~~I~~L~~~Gy~ 25 (103)
T PF11181_consen 2 VIGVYDNEEEALSAIEELKAQGYS 25 (103)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCC
Confidence 467778999999999999999986
No 126
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.96 E-value=55 Score=23.74 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=36.0
Q ss_pred CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCC
Q psy6794 2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHL 45 (165)
Q Consensus 2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~ 45 (165)
.|++||+-+-.....+..+|.-+.+.|+++.-|- -||++...
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~Ie--SRP~~~~~ 54 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIE--SRPSRLNK 54 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEE--eccCCCCC
Confidence 3689999998888999999999999999999996 47776543
No 127
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=35.49 E-value=36 Score=29.51 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCCeeeeee
Q psy6794 18 QQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 18 ~~~~~dl~~~~~d~~tigq 36 (165)
.++.+.|.++|+|++|+|-
T Consensus 49 ~~~~~~L~~~GvDviT~GN 67 (266)
T TIGR00282 49 LKIYEFLKQSGVNYITMGN 67 (266)
T ss_pred HHHHHHHHhcCCCEEEccc
Confidence 4567778899999999994
No 128
>KOG4233|consensus
Probab=35.49 E-value=7.9 Score=28.66 Aligned_cols=28 Identities=43% Similarity=0.656 Sum_probs=20.4
Q ss_pred eeecCCCHHHHHHHHHHHHHcCCC--eeeeeeccCC
Q psy6794 7 MLGLGETDAEVQQTLDDLLAAGVD--CVTLGQYMQP 40 (165)
Q Consensus 7 m~glge~~~ev~~~~~dl~~~~~d--~~tigqyl~p 40 (165)
.-|+|||-. ..|.++|.| .+.+||||-=
T Consensus 24 laGIg~~lg------~~L~~~GfdkAYvllGQfLll 53 (90)
T KOG4233|consen 24 LAGIGETLG------IKLVDAGFDKAYVLLGQFLLL 53 (90)
T ss_pred eccccHHhh------hhHHhccccHHHHHHHHHHHh
Confidence 346776543 478889999 5889999853
No 129
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=35.34 E-value=41 Score=29.32 Aligned_cols=24 Identities=8% Similarity=0.164 Sum_probs=11.9
Q ss_pred ceeeec-----CCCHHHHHHHHHHHHHcC
Q psy6794 5 SIMLGL-----GETDAEVQQTLDDLLAAG 28 (165)
Q Consensus 5 ~~m~gl-----ge~~~ev~~~~~dl~~~~ 28 (165)
.+|+|+ +|+.+++.++++.+.+.+
T Consensus 174 ~~i~G~P~~se~ea~ed~~~ti~~~~~l~ 202 (313)
T TIGR01210 174 YLLFKPPFLSEKEAIADMISSIRKCIPVT 202 (313)
T ss_pred EEEecCCCCChhhhHHHHHHHHHHHHhcC
Confidence 455554 234444555555555544
No 130
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=34.87 E-value=72 Score=27.39 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=31.5
Q ss_pred cceeeecC-CCHHHHHHHHHHHHHcCCCeeeeee--ccCCCC
Q psy6794 4 SSIMLGLG-ETDAEVQQTLDDLLAAGVDCVTLGQ--YMQPTK 42 (165)
Q Consensus 4 s~~m~glg-e~~~ev~~~~~dl~~~~~d~~tigq--yl~ps~ 42 (165)
.-+|+|.| .+.+|.++..+...++|+|.+-+.. |..|+.
T Consensus 70 ~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~ 111 (294)
T TIGR02313 70 IPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQ 111 (294)
T ss_pred CcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCH
Confidence 45799998 5788999999999999999777764 666654
No 131
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=34.82 E-value=45 Score=28.20 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=37.1
Q ss_pred cCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccc-cccchhhhhhchhhcc
Q psy6794 90 KIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVF-AHNIETVEKLTPYVRD 160 (165)
Q Consensus 90 s~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c-~~~~~~~~~~~~~~~~ 160 (165)
-+|.-.+...+-..+.+.+..-+- -..+-++.|....- --..+|||+.|.- .-...|.|.+..+|++
T Consensus 225 ~lH~cG~~~~~~~~l~~~~~d~~~-~d~~~dl~~~~~~~---g~~~~i~G~id~~~~l~~gt~eei~~~v~~ 292 (330)
T cd03465 225 IHHNCGDTAPILELMADLGADVFS-IDVTVDLAEAKKKV---GDKACLMGNLDPIDVLLNGSPEEIKEEVKE 292 (330)
T ss_pred EEEECCCchhHHHHHHHhCCCeEe-ecccCCHHHHHHHh---CCceEEEeCcChHHhhcCCCHHHHHHHHHH
Confidence 334334444555566666643322 22223776655421 1257899999887 4455677777666653
No 132
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.09 E-value=55 Score=24.77 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=35.2
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCC
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKH 44 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h 44 (165)
|++|++.+-....-+..+|..+...|+.+..|-. ||++..
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IES--RP~~~~ 80 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLES--RPSRKE 80 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEC--CcCCCC
Confidence 8999999999889999999999999999999964 676553
No 133
>COG3160 Rsd Regulator of sigma D [Transcription]
Probab=33.98 E-value=4.1 Score=33.12 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=40.1
Q ss_pred cCCCCC-CCccc---------cccccccCCCCccchhhhhccccccccCccccccCCccccccCCCCchHHHHHHH--Hh
Q psy6794 38 MQPTKK-HLKVS---------YRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQ--LR 105 (165)
Q Consensus 38 l~ps~~-h~~v~---------~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rKP~WLRvs~pag~~~~~V~~~--l~ 105 (165)
+||++. |.|.. ++-|||| .-+|+-|++-+++-+|+.. +.-+-..--.|. --+.++.+ ..
T Consensus 39 ikp~ke~~~plnakaL~~FCq~LvDYlS-----aGHF~iYe~i~~k~~~~g~--~~l~la~kI~p~--l~a~Tq~imnfn 109 (162)
T COG3160 39 IKPGKESYMPLNAKALDDFCQSLVDYLS-----AGHFSIYERILHKLEGNGD--RQLALAAKIWPQ--LEANTQQIMNFN 109 (162)
T ss_pred cCccccccCCCCHHHHHHHHHHHHHHHh-----ccchHHHHHHHHHHhccCc--HHHHHHHHHHHH--HHhhHHHHHhhc
Confidence 578764 66663 3468888 4489999977777777531 110101101111 11122333 34
Q ss_pred hcCccccccccCCC
Q psy6794 106 TLNLHTVCEEARCP 119 (165)
Q Consensus 106 ~~~L~TVCeeA~CP 119 (165)
+..++|+|++..|-
T Consensus 110 D~~~n~~~d~d~cl 123 (162)
T COG3160 110 DSSLNTAIDHDNCL 123 (162)
T ss_pred chhhccccCchHHH
Confidence 55689999988773
No 134
>PLN02681 proline dehydrogenase
Probab=33.92 E-value=40 Score=31.34 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCe
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDC 31 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~ 31 (165)
-|||.+|+..+++.|++.|+..
T Consensus 90 aGEt~~e~~~~i~~L~~~G~~~ 111 (455)
T PLN02681 90 AGEDAEEAARTVRRLWELGLGG 111 (455)
T ss_pred cCCCHHHHHHHHHHHHHCCCeE
Confidence 4999999999999999999985
No 135
>PRK05660 HemN family oxidoreductase; Provisional
Probab=32.83 E-value=59 Score=28.89 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=28.7
Q ss_pred ceeee-cCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 5 SIMLG-LGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 5 ~~m~g-lge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
.+|.| -|+|.+++.++++.+.+.|+|-+++-++.
T Consensus 163 dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~ 197 (378)
T PRK05660 163 DLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLT 197 (378)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccE
Confidence 36788 47999999999999999999988887764
No 136
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=32.28 E-value=55 Score=26.60 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeeeccCC
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLGQYMQP 40 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tigqyl~p 40 (165)
-=+.++..+.++.|.++||+.+-+|-.-.|
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~ 44 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASP 44 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCc
Confidence 348899999999999999999999965433
No 137
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=32.17 E-value=44 Score=29.53 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCCeeeeeeccCCC
Q psy6794 13 TDAEVQQTLDDLLAAGVDCVTLGQYMQPT 41 (165)
Q Consensus 13 ~~~ev~~~~~dl~~~~~d~~tigqyl~ps 41 (165)
.+++|.+++++-.++|+|++|=|++-|..
T Consensus 38 ~~~ai~~~V~~Q~~aGldiitDGE~rR~~ 66 (339)
T PRK09121 38 KQDALRLSLQEQEDAGIDIVSDGEQTRQH 66 (339)
T ss_pred HHHHHHHHHHHHHHhCCCceeCCccccch
Confidence 46788899999999999999999987765
No 138
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=32.14 E-value=45 Score=29.80 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCCeeeeeeccCC
Q psy6794 13 TDAEVQQTLDDLLAAGVDCVTLGQYMQP 40 (165)
Q Consensus 13 ~~~ev~~~~~dl~~~~~d~~tigqyl~p 40 (165)
.+++|.+++++..++|+|++|=||+-|.
T Consensus 43 ~~~ai~~~V~~Q~~aGldvitDGE~rR~ 70 (368)
T PRK06520 43 EDMEIRKVVEKQRACGLKVVTDGEFRRA 70 (368)
T ss_pred HHHHHHHHHHHHHHhCCCeeecCCcccc
Confidence 3678899999999999999999999884
No 139
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=31.74 E-value=73 Score=21.16 Aligned_cols=36 Identities=14% Similarity=0.387 Sum_probs=27.6
Q ss_pred eeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCC
Q psy6794 6 IMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKK 43 (165)
Q Consensus 6 ~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~ 43 (165)
|++=+-.....+.++|+.++++|+++++| .-+|.+.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I--~Srp~~~ 37 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKI--ESRPSRK 37 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEE--EeeecCC
Confidence 34444455567889999999999999999 5567766
No 140
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=31.67 E-value=48 Score=25.96 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCCCeeeee
Q psy6794 14 DAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 14 ~~ev~~~~~dl~~~~~d~~tig 35 (165)
+..+.++.+++++.||.+.+||
T Consensus 126 ~~~~~~~~~~~~~~gi~i~~vg 147 (186)
T cd01480 126 DGGIEKAVNEADHLGIKIFFVA 147 (186)
T ss_pred chhHHHHHHHHHHCCCEEEEEe
Confidence 4568889999999999999998
No 141
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=31.28 E-value=43 Score=28.77 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCCeeeeeeccCCCCCC
Q psy6794 14 DAEVQQTLDDLLAAGVDCVTLGQYMQPTKKH 44 (165)
Q Consensus 14 ~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h 44 (165)
+++|.+++++-.++|+|++|=|++-|..-.+
T Consensus 37 ~~ai~~~V~~Q~~~GldvitDGE~~R~~~~~ 67 (324)
T PF01717_consen 37 DEAIADAVKRQEDAGLDVITDGEFRRGDFHS 67 (324)
T ss_dssp HHHHHHHHHHHHHHT-SCBE-BTTT-SSTTH
T ss_pred HHHHHHHHHHHHHcCCCceecceeccCchhh
Confidence 5788999999999999999999987776443
No 142
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=31.13 E-value=42 Score=29.12 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=21.5
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 8 LGLGETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 8 ~glge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
+|.-++.++..+.++.|.++||+.|||=
T Consensus 131 ~g~~~~~~~~~~~~~~l~~~G~~~i~vH 158 (309)
T PF01207_consen 131 LGWDDSPEETIEFARILEDAGVSAITVH 158 (309)
T ss_dssp SECT--CHHHHHHHHHHHHTT--EEEEE
T ss_pred cccccchhHHHHHHHHhhhcccceEEEe
Confidence 5666778999999999999999999986
No 143
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=31.11 E-value=87 Score=26.70 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=27.2
Q ss_pred ceeeecCCCHHHHHHHHHHHHHcCCCeeee
Q psy6794 5 SIMLGLGETDAEVQQTLDDLLAAGVDCVTL 34 (165)
Q Consensus 5 ~~m~glge~~~ev~~~~~dl~~~~~d~~ti 34 (165)
-+++|.|-+.+|.++..+...++|+|.+.+
T Consensus 71 pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 71 PVLAGAGYGTATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred CEEEecCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 478999989999999999999999998766
No 144
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=30.77 E-value=52 Score=26.59 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=27.1
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
--|++-=|.+.+++.+..+.|++.||.|.+||
T Consensus 111 vvillTDG~s~~~~~~~a~~lk~~gv~i~~Vg 142 (224)
T cd01475 111 VGIVVTDGRPQDDVSEVAAKARALGIEMFAVG 142 (224)
T ss_pred EEEEEcCCCCcccHHHHHHHHHHCCcEEEEEe
Confidence 34566668888889999999999999999998
No 145
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=30.38 E-value=55 Score=29.71 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=29.2
Q ss_pred eecCCCHHHHHHHHHHHHHcCCC-eeeeeeccCCCC
Q psy6794 8 LGLGETDAEVQQTLDDLLAAGVD-CVTLGQYMQPTK 42 (165)
Q Consensus 8 ~glge~~~ev~~~~~dl~~~~~d-~~tigqyl~ps~ 42 (165)
+|++-..++..+..+.|..+||| |+-+||=+.+..
T Consensus 348 vgi~~~~~~~~~~~~~l~~~Gv~Riv~~G~m~~~~~ 383 (399)
T PF05893_consen 348 VGIYPWSERLEELARALAAAGVDRIVPLGQMLDFDP 383 (399)
T ss_pred EEEecChhhHHHHHHHHHhcCCeeeCCCCcCCCCCC
Confidence 67777778888888889999999 888999887765
No 146
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=29.97 E-value=69 Score=29.01 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=28.9
Q ss_pred ceeee-cCCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 5 SIMLG-LGETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 5 ~~m~g-lge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
.||+| =|+|.+++.++++.+.+.|++-+++-.+
T Consensus 197 dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L 230 (430)
T PRK08208 197 DLIYGIPGQTHASWMESLDQALVYRPEELFLYPL 230 (430)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccc
Confidence 47889 4899999999999999999999888874
No 147
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=29.92 E-value=37 Score=29.56 Aligned_cols=24 Identities=42% Similarity=0.803 Sum_probs=13.9
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
|.|=|. +..+.|.++|||++|.|-
T Consensus 41 G~Git~----~~~~~L~~~GvDviT~GN 64 (253)
T PF13277_consen 41 GFGITP----KIAEELFKAGVDVITMGN 64 (253)
T ss_dssp TSS--H----HHHHHHHHHT-SEEE--T
T ss_pred CCCCCH----HHHHHHHhcCCCEEecCc
Confidence 445454 345678899999999994
No 148
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=29.81 E-value=44 Score=28.41 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCeeeeeecc
Q psy6794 19 QTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 19 ~~~~dl~~~~~d~~tigqyl 38 (165)
+++..+.++|+|++..|.|+
T Consensus 191 ~ti~~l~~aGaD~~V~GSal 210 (228)
T PRK08091 191 ELASYLKQHQIDWVVSGSAL 210 (228)
T ss_pred HHHHHHHHCCCCEEEEChhh
Confidence 67888999999999999765
No 149
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=29.66 E-value=74 Score=19.24 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=24.0
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
|+..+..-+...++.|.+.++.+..+.|-.
T Consensus 9 ~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 9 GMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred CCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 455555667788899999999999999855
No 150
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=29.47 E-value=2.4e+02 Score=25.82 Aligned_cols=94 Identities=12% Similarity=0.118 Sum_probs=54.4
Q ss_pred ceeeec-C-CCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCcccccc
Q psy6794 5 SIMLGL-G-ETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLR 82 (165)
Q Consensus 5 ~~m~gl-g-e~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~r 82 (165)
-+++-+ | .+.+|..+..+.+-++|+|.+.|-=+--.+. +......-+.+ .++...+.-..++. ...
T Consensus 115 pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~---~~r~~g~~~gq---~~e~~~~i~~~Vk~------~~~ 182 (385)
T PLN02495 115 ILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM---PERKMGAAVGQ---DCDLLEEVCGWINA------KAT 182 (385)
T ss_pred cEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC---CcCccchhhcc---CHHHHHHHHHHHHH------hhc
Confidence 456666 4 7999999999999999999999875432221 11100000111 13333333212221 235
Q ss_pred CCccccccCCCCchHHHHHHHHhhcCccc
Q psy6794 83 LPPWLKTKIPTGSQFAKVKEQLRTLNLHT 111 (165)
Q Consensus 83 KP~WLRvs~pag~~~~~V~~~l~~~~L~T 111 (165)
+|=|+|.+. .-..+..+.+.+.+.+..-
T Consensus 183 iPv~vKLsP-n~t~i~~ia~aa~~~Gadg 210 (385)
T PLN02495 183 VPVWAKMTP-NITDITQPARVALKSGCEG 210 (385)
T ss_pred CceEEEeCC-ChhhHHHHHHHHHHhCCCE
Confidence 788999884 4445777777777776533
No 151
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=29.20 E-value=62 Score=25.09 Aligned_cols=31 Identities=16% Similarity=0.377 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCCeeeeee-ccCCCCC
Q psy6794 13 TDAEVQQTLDDLLAAGVDCVTLGQ-YMQPTKK 43 (165)
Q Consensus 13 ~~~ev~~~~~dl~~~~~d~~tigq-yl~ps~~ 43 (165)
+.+||..+|+.|++.|+++.-|=+ ||.-+++
T Consensus 66 l~~EV~pvi~aL~~~GI~vtAlHNH~l~e~Pr 97 (123)
T PF07485_consen 66 LEDEVNPVISALRKNGIEVTALHNHWLFEQPR 97 (123)
T ss_pred cHHHHHHHHHHHHHCCceEEEEecccccCCCC
Confidence 589999999999999999988753 4444433
No 152
>PRK06233 hypothetical protein; Provisional
Probab=29.12 E-value=53 Score=29.35 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCCeeeeeeccCC
Q psy6794 14 DAEVQQTLDDLLAAGVDCVTLGQYMQP 40 (165)
Q Consensus 14 ~~ev~~~~~dl~~~~~d~~tigqyl~p 40 (165)
+++|.+++++-.++|+|++|=|++-|.
T Consensus 45 ~~ai~~~V~~Q~~aGldiitDGE~rR~ 71 (372)
T PRK06233 45 HAEIKRLVKEQVELGLKAVTDGEFNRS 71 (372)
T ss_pred HHHHHHHHHHHHHhCCCeeeCCCcCCc
Confidence 578899999999999999999998873
No 153
>PLN02417 dihydrodipicolinate synthase
Probab=28.72 E-value=1.1e+02 Score=25.94 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=29.9
Q ss_pred cceeeecCC-CHHHHHHHHHHHHHcCCCeeeeee--ccCCC
Q psy6794 4 SSIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLGQ--YMQPT 41 (165)
Q Consensus 4 s~~m~glge-~~~ev~~~~~dl~~~~~d~~tigq--yl~ps 41 (165)
.-+|+|.|. +.+|+++..+...++|+|.+-+-. |..||
T Consensus 71 ~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~ 111 (280)
T PLN02417 71 IKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS 111 (280)
T ss_pred CcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCC
Confidence 358999997 789999999999999999766542 44444
No 154
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=28.70 E-value=93 Score=22.31 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=29.9
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeeee-----eccCCCCC
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTLG-----QYMQPTKK 43 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~tig-----qyl~ps~~ 43 (165)
=.-++.|||.+.+.+..+.|-.+|+|- +||-|+.+
T Consensus 17 es~~s~dev~~~v~~Al~~~~~~l~LtD~kGr~~lVp~~~ 56 (74)
T PF11305_consen 17 ESDQSADEVEAAVTDALADGSGVLTLTDEKGRRVLVPAAS 56 (74)
T ss_pred ecCCCHHHHHHHHHHHHhCCCceEEEEeCCCCEEEEECCc
Confidence 345789999999999999999999987 58888765
No 155
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.65 E-value=1.5e+02 Score=19.62 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=31.6
Q ss_pred eeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccc
Q psy6794 7 MLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVS 48 (165)
Q Consensus 7 m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~ 48 (165)
||=-|-+.+|+.+.|+.+|+.|+ -+.+=-=+-|+...+.+.
T Consensus 4 ll~~g~~~~el~~~l~~~r~~~~-~~~~kAvlT~tN~~Wt~~ 44 (58)
T PF12646_consen 4 LLFSGFSGEELDKFLDALRKAGI-PIPLKAVLTPTNINWTLK 44 (58)
T ss_pred EEECCCCHHHHHHHHHHHHHcCC-CcceEEEECCCcccCcHH
Confidence 34446699999999999999999 555555667888777774
No 156
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.55 E-value=1e+02 Score=26.63 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=30.2
Q ss_pred cceeeecC-CCHHHHHHHHHHHHHcCCCeeeee-e-ccCCCC
Q psy6794 4 SSIMLGLG-ETDAEVQQTLDDLLAAGVDCVTLG-Q-YMQPTK 42 (165)
Q Consensus 4 s~~m~glg-e~~~ev~~~~~dl~~~~~d~~tig-q-yl~ps~ 42 (165)
--+|+|.| .+.+|.++..+...++|+|-+-+- - |..|+.
T Consensus 78 vpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~ 119 (309)
T cd00952 78 VPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDV 119 (309)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCH
Confidence 45899999 488999999999999999954443 2 555543
No 157
>PLN03128 DNA topoisomerase 2; Provisional
Probab=28.53 E-value=37 Score=35.33 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=34.1
Q ss_pred ecCC-CHHHHHHHHHHHHHcCCCeeeee-----------------------------eccCCCCCCCcccccccccc
Q psy6794 9 GLGE-TDAEVQQTLDDLLAAGVDCVTLG-----------------------------QYMQPTKKHLKVSYRETFVF 55 (165)
Q Consensus 9 glge-~~~ev~~~~~dl~~~~~d~~tig-----------------------------qyl~ps~~h~~v~~~~~fV~ 55 (165)
|||| +.+|..+++.||-.+-.++...+ +||.++.+++++. |||.
T Consensus 587 GLGe~~~~e~~e~f~~~~~~~~~f~~~~~~~~~~i~~aF~k~~~~~RK~Wl~~~~~~~~~d~~~~~i~~~---dfi~ 660 (1135)
T PLN03128 587 GLGTSTSEEAKEYFSNLDIHKKEFLWQSDEDGDLIDMAFSKKRVEDRKIWLNNYEPGTFLDQTGNGISYS---DFIN 660 (1135)
T ss_pred ccccCCHHHHHHHHHhHHHhEEEEEeCCCCcHHHHHHhcCCCcHHHHHHHHHhCCCCccccCCCccccHH---HHHH
Confidence 9999 88999999999988777665443 4677777777775 7765
No 158
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=28.39 E-value=55 Score=28.63 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 14 DAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 14 ~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
++.+.+++++..++|+|++|=|++
T Consensus 39 ~~a~~~~v~~Q~~aGlD~itdGe~ 62 (326)
T PRK08575 39 NENTKRFFELAKDVGIDYTTDGLF 62 (326)
T ss_pred HHHHHHHHHHHHHcCCCEeCCCCc
Confidence 345667777888999999999997
No 159
>PTZ00333 triosephosphate isomerase; Provisional
Probab=27.81 E-value=58 Score=28.02 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCC-eeeeeeccC
Q psy6794 10 LGETDAEVQQTLDDLLAAGVD-CVTLGQYMQ 39 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d-~~tigqyl~ 39 (165)
+|||++.|-+-++.+.++|.. |+-+|..++
T Consensus 104 f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~ 134 (255)
T PTZ00333 104 FGETNEIVAQKVKNALENGLKVILCIGETLE 134 (255)
T ss_pred CCCCcHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 699999999999999999997 889998764
No 160
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=27.81 E-value=71 Score=28.19 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=23.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
.|.+.+|..+.++.|-++|+|++.+.
T Consensus 236 ~~~~~ee~~~~~~~l~~~g~d~i~vs 261 (338)
T cd02933 236 DSDPEATFSYLAKELNKRGLAYLHLV 261 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 36799999999999999999999883
No 161
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=27.80 E-value=81 Score=29.04 Aligned_cols=91 Identities=25% Similarity=0.402 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHH---HHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccccCCccccc
Q psy6794 13 TDAEVQQTLDDL---LAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKT 89 (165)
Q Consensus 13 ~~~ev~~~~~dl---~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rKP~WLRv 89 (165)
|.+|+.++.++| ....+|++.||= =|+.+ ++..+....++ |.+.+..+|=|+-.
T Consensus 271 ~~~dl~~~~~~l~~~~~~~~D~V~lGc------PH~S~--------------~El~~ia~ll~---gr~~~~~~~~~i~t 327 (400)
T PF04412_consen 271 TDADLEEVYEELNTAGDEKVDLVALGC------PHLSL--------------EELREIAELLE---GRKVHPNVPLWITT 327 (400)
T ss_pred CHHHHHHHHHHhccCCCCCCCEEEECC------CCCCH--------------HHHHHHHHHHh---CCCCCCCceEEEEC
Confidence 567777777777 444566676662 23333 34444443333 32225667778876
Q ss_pred cCCCCchHHH--HHHHHhhcCccccccccCCCCccccccCC
Q psy6794 90 KIPTGSQFAK--VKEQLRTLNLHTVCEEARCPNIGECWGGG 128 (165)
Q Consensus 90 s~pag~~~~~--V~~~l~~~~L~TVCeeA~CPNi~EC~~~g 128 (165)
+..--+.+.+ .-+.|++.|..-|+.. ||=....+..+
T Consensus 328 ~~~v~~~a~~~G~~~~le~~G~~iv~dT--C~~v~p~~~~~ 366 (400)
T PF04412_consen 328 SRAVYELAERMGYVERLEKAGVQIVTDT--CMVVSPIIPKG 366 (400)
T ss_pred CHHHHHHHHhCCHHHHHHHcCCEEEccc--cceeccccCCC
Confidence 6665566666 7788999999999888 99887776655
No 162
>PRK13413 mpi multiple promoter invertase; Provisional
Probab=27.61 E-value=74 Score=25.41 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=25.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
||-+..|+.+.++.|.+.||.++++-+-+
T Consensus 73 l~R~~~d~~~~~~~l~~~gv~l~~~~~~~ 101 (200)
T PRK13413 73 LGRNLMEIMSILNICMEKEVIVYTIKEGY 101 (200)
T ss_pred hcCCHHHHHHHHHHHHHCCCEEEEEecCc
Confidence 67888999999999999999999997643
No 163
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=26.57 E-value=62 Score=24.78 Aligned_cols=29 Identities=31% Similarity=0.298 Sum_probs=24.3
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCe----eeeeec
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDC----VTLGQY 37 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~----~tigqy 37 (165)
+|=|+.+.+.++=+.|-+.|+.+ +|+|||
T Consensus 24 tlke~p~R~~av~~~les~G~k~~~~y~T~GeY 56 (104)
T COG4274 24 TLKETPKRAAAVRALLESMGGKVKEQYWTLGEY 56 (104)
T ss_pred HHhhCHHHHHHHHHHHHHcCcEEEEEEEeeccc
Confidence 45578888888888899999986 799998
No 164
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=26.54 E-value=78 Score=28.23 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=0.0
Q ss_pred CHHHHHHHHHH-------HHHcCCCeeee--------eeccCCCCCC
Q psy6794 13 TDAEVQQTLDD-------LLAAGVDCVTL--------GQYMQPTKKH 44 (165)
Q Consensus 13 ~~~ev~~~~~d-------l~~~~~d~~ti--------gqyl~ps~~h 44 (165)
|.+||.+++++ +.++|.|-|-| .|+|.|..+|
T Consensus 150 t~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~ 196 (362)
T PRK10605 150 ELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQ 196 (362)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCC
No 165
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=26.06 E-value=89 Score=19.69 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=24.7
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 8 LGLGETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 8 ~glge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
+|+..+..-+.+.++-|.++|+.+..+.|-
T Consensus 7 ~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 7 RGVPDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 667666677788999999999999988774
No 166
>PF06778 Chlor_dismutase: Chlorite dismutase; InterPro: IPR010644 This family contains chlorite dismutase enzymes of bacterial and archaeal origin. This enzyme catalyses the disproportionation of chlorite into chloride and oxygen [, ]. Note that many family members are hypothetical proteins.; PDB: 2VXH_B 3NN4_A 3NN2_A 3NN3_D 3NN1_E 3QPI_A 3Q08_Q 3Q09_B 1T0T_V 1VDH_E ....
Probab=26.04 E-value=28 Score=28.86 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=37.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccC
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQ 56 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~ 56 (165)
=+|++.+++.++..+|+... ||.|+.|+..-+-|.+...|+..
T Consensus 44 ~~~~~~~~lq~~~~~l~~t~-----lg~~l~~~~s~~sv~~~s~Y~~~ 86 (193)
T PF06778_consen 44 WHAPDLEDLQEAERRLRRTR-----LGRYLEPTWSYVSVTEPSEYVKR 86 (193)
T ss_dssp EEESSHHHHHHHHHHHHHST-----CGGGEEEEEEEEEEEEECSSSST
T ss_pred EeCCCHHHHHHHHHHHHhhh-----hhhhhhhceeEEEEeccccccCC
Confidence 46899999999999999876 89999999988888877888873
No 167
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=26.01 E-value=72 Score=27.90 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=31.7
Q ss_pred ceeeecCCCHHHHHHHHHHHHHcCCC---eeeeeeccCCCCCC
Q psy6794 5 SIMLGLGETDAEVQQTLDDLLAAGVD---CVTLGQYMQPTKKH 44 (165)
Q Consensus 5 ~~m~glge~~~ev~~~~~dl~~~~~d---~~tigqyl~ps~~h 44 (165)
.+.+++||..+||.+.++++++.|+. ++.+.+-=.|...+
T Consensus 100 ~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 100 CIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred EEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 36799999999999999999999974 66666665555443
No 168
>PLN02561 triosephosphate isomerase
Probab=25.89 E-value=65 Score=27.76 Aligned_cols=113 Identities=21% Similarity=0.274 Sum_probs=64.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCC-eeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCcccccc---CCc
Q psy6794 10 LGETDAEVQQTLDDLLAAGVD-CVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLR---LPP 85 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d-~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~r---KP~ 85 (165)
+|||++.|-+.++.+.++|.. |+-+|..++.-..--- .++|..+ .+..-..+. .. .++- -|.
T Consensus 103 f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~----~~~v~~Q------l~~~l~~v~---~~-~~iiIAYEPv 168 (253)
T PLN02561 103 LGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGST----MDVVAAQ------TKAIADKVS---DW-ANVVLAYEPV 168 (253)
T ss_pred cCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCH----HHHHHHH------HHHHHhccc---cc-cceEEEECCH
Confidence 799999999999999999997 8999988765332111 1334311 111110010 00 0111 278
Q ss_pred cc--cccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccchhh
Q psy6794 86 WL--KTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETV 151 (165)
Q Consensus 86 WL--Rvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~~~ 151 (165)
|. .=+.+..+..+++.+.+|+. | + +=|+.. -.....||-+|.|=..|+...
T Consensus 169 WAIGtG~~as~~~~~~v~~~Ir~~-l---~---------~~~~~~--~a~~i~ILYGGSV~~~N~~~l 221 (253)
T PLN02561 169 WAIGTGKVATPAQAQEVHDELRKW-L---H---------KNVSPE--VAATTRIIYGGSVTGANCKEL 221 (253)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHH-H---H---------Hhhccc--ccccceEEEeCCcCHHHHHHH
Confidence 87 33345667788888888763 1 0 112211 012346777888877776543
No 169
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=25.80 E-value=87 Score=26.61 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=25.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeee-ee
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTL-GQ 36 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~ti-gq 36 (165)
|.|++.+++.++.+.|.++|++-+.| +|
T Consensus 83 G~g~~~~~~~~~~~~l~~aGa~gv~iED~ 111 (240)
T cd06556 83 GAYGAPTAAFELAKTFMRAGAAGVKIEGG 111 (240)
T ss_pred CCCcCHHHHHHHHHHHHHcCCcEEEEcCc
Confidence 78998899999999999999999999 54
No 170
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=25.70 E-value=82 Score=27.63 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
-|.+|+|+.+.+.++.++|++.+..+-
T Consensus 194 P~~~d~e~e~~l~~~~~ag~~~v~~~~ 220 (297)
T COG1533 194 PGLNDEELERILEAAAEAGARVVVYGT 220 (297)
T ss_pred CCCChHHHHHHHHHHHHcCCCeeEeee
Confidence 367899999999999999999876653
No 171
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.54 E-value=86 Score=27.64 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
|-|.+|.++.++.|.++|||.++++..
T Consensus 231 g~~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 667899999999999999999998753
No 172
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.50 E-value=1e+02 Score=25.78 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=26.9
Q ss_pred cceeeecCC-CHHHHHHHHHHHHHcCCCeeeee
Q psy6794 4 SSIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 4 s~~m~glge-~~~ev~~~~~dl~~~~~d~~tig 35 (165)
.-||+|.|. +.+|.++..+++.++|+|-+-+.
T Consensus 70 ~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 70 VPVIAGTGSNNTAEAIELTKRAEKAGADAALVV 102 (284)
T ss_pred CcEEeccCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 357999985 89999999999999999955544
No 173
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=25.33 E-value=67 Score=28.03 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=35.0
Q ss_pred ceeeecCCCHHHHHHHHHHHHHcCCC---eeeeeeccCCCCCCCcc
Q psy6794 5 SIMLGLGETDAEVQQTLDDLLAAGVD---CVTLGQYMQPTKKHLKV 47 (165)
Q Consensus 5 ~~m~glge~~~ev~~~~~dl~~~~~d---~~tigqyl~ps~~h~~v 47 (165)
.+++++||..+||.+.++++.+.|+- ++...+-=+|...|+-+
T Consensus 101 ~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 101 SVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred EEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 58899999999999999999998874 56667777776666554
No 174
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=25.22 E-value=77 Score=20.47 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=30.6
Q ss_pred ccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccchhhhhh
Q psy6794 87 LKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETVEKL 154 (165)
Q Consensus 87 LRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~~~~~~ 154 (165)
+++..+. +.+.++.+.|++ +|++-+||.- .|..-+++.. ..++++.++.+
T Consensus 3 V~~~~~~-~~~~~~~~~l~~-----------~p~V~~~~~v--tG~~d~~~~v----~~~d~~~l~~~ 52 (74)
T PF01037_consen 3 VKVEPGH-DAYDEFAEALAE-----------IPEVVECYSV--TGEYDLILKV----RARDMEELEEF 52 (74)
T ss_dssp EEESTTG-THHHHHHHHHHT-----------STTEEEEEEE--SSSSSEEEEE----EESSHHHHHHH
T ss_pred EEEcCCC-chHHHHHHHHHc-----------CCCEEEEEEE--eCCCCEEEEE----EECCHHHHHHH
Confidence 3333333 457777777765 8999999984 3555665554 44555554444
No 175
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.14 E-value=1.2e+02 Score=18.57 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=22.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
+..+..=..+.++.|.++|+.+..++|
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 666666677888999999999999986
No 176
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=25.08 E-value=1.2e+02 Score=25.18 Aligned_cols=33 Identities=9% Similarity=0.232 Sum_probs=26.1
Q ss_pred ccceeeec---CCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 3 ESSIMLGL---GETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 3 ks~~m~gl---ge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
+.-+.+++ |+| .++.++++-+++.|+.++.|.-
T Consensus 175 ~~D~vI~iS~sG~t-~~~~~~~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 175 DGDVVVLISHTGRT-KSLVELAQLARENGATVIAITS 210 (284)
T ss_pred CCCEEEEEeCCCCC-HHHHHHHHHHHHcCCeEEEECC
Confidence 33455555 666 5699999999999999999985
No 177
>PRK13938 phosphoheptose isomerase; Provisional
Probab=25.06 E-value=1.2e+02 Score=24.75 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=27.3
Q ss_pred ccceeeec---CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 3 ESSIMLGL---GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 3 ks~~m~gl---ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.-+.+++ |+| .++++.++-+++.|+.++.|..+-
T Consensus 113 ~~DllI~iS~SG~t-~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 113 PGDTLFAISTSGNS-MSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred CCCEEEEEcCCCCC-HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 44455665 555 569999999999999999998753
No 178
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=25.00 E-value=1.3e+02 Score=25.52 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=30.2
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +.+|.++..+...++|+|.+.+- -|..|+.
T Consensus 75 ~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~ 115 (293)
T PRK04147 75 KLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSF 115 (293)
T ss_pred CEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCH
Confidence 58999985 78999999999999999966654 3555543
No 179
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=24.96 E-value=1.4e+02 Score=24.95 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=27.1
Q ss_pred cceeeecCC-CHHHHHHHHHHHHHcCCCeeeee
Q psy6794 4 SSIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 4 s~~m~glge-~~~ev~~~~~dl~~~~~d~~tig 35 (165)
--+|+|.|. +.+|.++..+...++|+|.+-+.
T Consensus 67 ~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~ 99 (281)
T cd00408 67 VPVIAGVGANSTREAIELARHAEEAGADGVLVV 99 (281)
T ss_pred CeEEEecCCccHHHHHHHHHHHHHcCCCEEEEC
Confidence 457999997 77889999999999999976663
No 180
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=24.92 E-value=56 Score=28.78 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=18.1
Q ss_pred HHHHHHHHcCCCeeeeee--ccCCC
Q psy6794 19 QTLDDLLAAGVDCVTLGQ--YMQPT 41 (165)
Q Consensus 19 ~~~~dl~~~~~d~~tigq--yl~ps 41 (165)
+.-++|.++|+|++|+|- |-|+-
T Consensus 50 k~y~~l~~~G~dviT~GNH~wd~~e 74 (266)
T COG1692 50 KIYKELLEAGADVITLGNHTWDQKE 74 (266)
T ss_pred HHHHHHHHhCCCEEecccccccchH
Confidence 355788999999999995 66654
No 181
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=24.80 E-value=1e+02 Score=28.10 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=28.8
Q ss_pred eeeecCCCHHHHHHHHHHHHHcCCC--eeeeeeccCCCC
Q psy6794 6 IMLGLGETDAEVQQTLDDLLAAGVD--CVTLGQYMQPTK 42 (165)
Q Consensus 6 ~m~glge~~~ev~~~~~dl~~~~~d--~~tigqyl~ps~ 42 (165)
++|++|-+...+.++++.||+.|.+ ++-|.+ ++|=+
T Consensus 263 ~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~-~~PfP 300 (390)
T PRK08366 263 VFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRW-FRPFP 300 (390)
T ss_pred EEEEeCccHHHHHHHHHHHHhcCCceeeEEEee-ecCCC
Confidence 7899999999999999999999865 455554 45543
No 182
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=24.59 E-value=61 Score=27.24 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCCeeeeeecc
Q psy6794 19 QTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 19 ~~~~dl~~~~~d~~tigqyl 38 (165)
+++..+.++|+|++..|-|+
T Consensus 183 eti~~l~~aGaDi~V~GSai 202 (223)
T PRK08745 183 DNIGAIAAAGADTFVAGSAI 202 (223)
T ss_pred HHHHHHHHcCCCEEEEChhh
Confidence 57888999999999999766
No 183
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=24.52 E-value=1.1e+02 Score=25.81 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=26.9
Q ss_pred cceeeecCC-CHHHHHHHHHHHHHcCCCeeee
Q psy6794 4 SSIMLGLGE-TDAEVQQTLDDLLAAGVDCVTL 34 (165)
Q Consensus 4 s~~m~glge-~~~ev~~~~~dl~~~~~d~~ti 34 (165)
.-||+|.|. +.+|.++..+.+.++|+|.+.+
T Consensus 71 ~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~ 102 (292)
T PRK03170 71 VPVIAGTGSNSTAEAIELTKFAEKAGADGALV 102 (292)
T ss_pred CcEEeecCCchHHHHHHHHHHHHHcCCCEEEE
Confidence 358999995 8899999999999999996655
No 184
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=24.46 E-value=84 Score=23.66 Aligned_cols=31 Identities=19% Similarity=0.481 Sum_probs=24.6
Q ss_pred eeeecCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 6 IMLGLGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 6 ~m~glge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
|++-=|+..+++.+...+|++.||.+.+||-
T Consensus 108 iliTDG~~~~~~~~~~~~l~~~gv~i~~ig~ 138 (164)
T cd01472 108 VVITDGKSQDDVEEPAVELKQAGIEVFAVGV 138 (164)
T ss_pred EEEcCCCCCchHHHHHHHHHHCCCEEEEEEC
Confidence 4555577777788888899999999999973
No 185
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=24.11 E-value=90 Score=26.53 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=25.7
Q ss_pred ccceeeecCCC-HHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 3 ESSIMLGLGET-DAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 3 ks~~m~glge~-~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.-|++|.|=+ .+++. .+.++|+|.+.+|..+
T Consensus 198 ~~pi~vgfGI~~~e~~~----~~~~~GADgvVvGSai 230 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVK----QAIDAGADGVIVGSAI 230 (256)
T ss_pred CCCEEEeCCCCCHHHHH----HHHHcCCCEEEECHHH
Confidence 45689999997 66554 4788999999999876
No 186
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=24.10 E-value=3.4e+02 Score=23.20 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=52.2
Q ss_pred CC-CHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccc-cccccccCCCCccchhhhhccccccccCccccccCCcccc
Q psy6794 11 GE-TDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVS-YRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLK 88 (165)
Q Consensus 11 ge-~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~-~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rKP~WLR 88 (165)
|. +.++..+..+.+.++|+|.+.|-=. -|.. +.. ....++-. .++...++-..++. ....|=|+|
T Consensus 108 G~~~~~~~~~~a~~~~~~gad~ielN~s-CP~~---~~~~~~G~~l~~---~~~~~~~iv~~v~~------~~~~Pv~vK 174 (299)
T cd02940 108 CEYNKEDWTELAKLVEEAGADALELNFS-CPHG---MPERGMGAAVGQ---DPELVEEICRWVRE------AVKIPVIAK 174 (299)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEECC-CCCC---CCCCCCchhhcc---CHHHHHHHHHHHHH------hcCCCeEEE
Confidence 77 8899999999998889998887533 2222 111 00112221 13343343322332 234677888
Q ss_pred ccCCCCchHHHHHHHHhhcCccccc
Q psy6794 89 TKIPTGSQFAKVKEQLRTLNLHTVC 113 (165)
Q Consensus 89 vs~pag~~~~~V~~~l~~~~L~TVC 113 (165)
.+. .-.++.++-+.+.+.+..-|+
T Consensus 175 l~~-~~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 175 LTP-NITDIREIARAAKEGGADGVS 198 (299)
T ss_pred CCC-CchhHHHHHHHHHHcCCCEEE
Confidence 774 334677777777787777666
No 187
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=24.07 E-value=94 Score=27.48 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
|-+.+|..+.++.|-++|+|.|++..
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 67899999999999999999887754
No 188
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=24.01 E-value=81 Score=27.47 Aligned_cols=30 Identities=30% Similarity=0.529 Sum_probs=22.4
Q ss_pred ccceeeecCCC--HHHHHHHHHHHHHcCCCeeeee
Q psy6794 3 ESSIMLGLGET--DAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 3 ks~~m~glge~--~~ev~~~~~dl~~~~~d~~tig 35 (165)
+|=||||-|-- .+.+. +-++++|++++|+.
T Consensus 9 ~SRl~~Gtgky~s~~~~~---~ai~aSg~~ivTva 40 (248)
T cd04728 9 SSRLLLGTGKYPSPAIMK---EAIEASGAEIVTVA 40 (248)
T ss_pred ecceEEecCCCCCHHHHH---HHHHHhCCCEEEEE
Confidence 57789999974 33333 44679999999987
No 189
>PRK09993 C-lysozyme inhibitor; Provisional
Probab=23.89 E-value=17 Score=29.48 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=36.5
Q ss_pred cCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCc--cccccCCCCcceeeee
Q psy6794 82 RLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNI--GECWGGGEHGTSTATI 137 (165)
Q Consensus 82 rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi--~EC~~~g~~~~aT~~i 137 (165)
+.|+|++.- .....++.+.-.=+.+-+-++|+-.-|+|- .-=|+.. ++.|-.|.
T Consensus 51 ~LP~WV~~g-GtssP~~~V~~~G~~YlVg~~CKPHDC~~~rl~V~fs~d-kk~a~Gvl 106 (153)
T PRK09993 51 KLPAWVMKG-GTYSPAQTVTLGDETYQVMSACKPHDCGSQRIAVLWSEK-SNQMTGVF 106 (153)
T ss_pred CCcHHHHcC-CCCCchhheeeCCceEEEeccccccCCCcceEEEEEcCC-CcceEEEE
Confidence 689999965 444456766666677889999999999963 3344433 34444443
No 190
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=23.77 E-value=1.2e+02 Score=25.78 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=26.5
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
|.|.+...|..+.+.+.++|+--+.|=..
T Consensus 79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 79 GYGNDPENVARTVRELERAGAAGINIEDQ 107 (238)
T ss_dssp TSSSSHHHHHHHHHHHHHCT-SEEEEESB
T ss_pred ccCchhHHHHHHHHHHHHcCCcEEEeecc
Confidence 88999999999999999999999999866
No 191
>PRK09565 hypothetical protein; Reviewed
Probab=23.71 E-value=79 Score=30.39 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=38.0
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCcccccccccc
Q psy6794 8 LGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVF 55 (165)
Q Consensus 8 ~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~ 55 (165)
.=|+++.+++.++-++|+. ..||+||.|+..-+.|..+..|+.
T Consensus 75 w~lrptleeLq~ae~~f~r-----T~Lg~~lep~~SyvSV~e~SeY~~ 117 (533)
T PRK09565 75 LHLRPTLADLDRAERRFEQ-----TALAAFTEQADSYVSVTEASGYTE 117 (533)
T ss_pred EEeCCCHHHHHHHHHHHHh-----cccccccccceeeeEEeeeccccC
Confidence 3489999999999999988 479999999999999988888874
No 192
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=23.41 E-value=1.1e+02 Score=27.16 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=26.8
Q ss_pred eeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 6 IMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 6 ~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+|.|| |+|.+++.++++.+.+.+++-+++-.+.
T Consensus 160 li~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~ 193 (370)
T PRK06294 160 LIYGLPTQSLSDFIVDLHQAITLPITHISLYNLT 193 (370)
T ss_pred eecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeE
Confidence 67884 8899999999999999998877776543
No 193
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=23.30 E-value=1.3e+02 Score=21.29 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
|++ .++.+.++.+++.|+.++.|...
T Consensus 71 g~~-~~~~~~~~~a~~~g~~iv~iT~~ 96 (139)
T cd05013 71 GET-KETVEAAEIAKERGAKVIAITDS 96 (139)
T ss_pred CCC-HHHHHHHHHHHHcCCeEEEEcCC
Confidence 444 68999999999999999999875
No 194
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=23.18 E-value=1e+02 Score=25.57 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=27.9
Q ss_pred CCccceeee-----cCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 1 MRESSIMLG-----LGETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 1 ~~ks~~m~g-----lge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
|+|--|+|. =|-.+.|+...++-|+++|+++...+
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEe
Confidence 456666774 37789999999999999999877665
No 195
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=23.07 E-value=1.4e+02 Score=18.28 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=22.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
+.++..-..+.++.|.++|+++..++|
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 666666677888999999999999985
No 196
>TIGR03554 F420_G6P_DH glucose-6-phosphate dehydrogenase, F420-dependent. This family consists of the F420-dependent glucose-6-phosphate dehydrogenase of Mycobacterium and Nocardia. It shows homology to several other F420-dependent enzymes rather than to the NAD or NADP-dependent glucose-6-phosphate dehydrogenases.
Probab=23.04 E-value=1e+02 Score=26.82 Aligned_cols=27 Identities=7% Similarity=0.219 Sum_probs=22.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
+--|.|||.+.|++++++||+-+.++.
T Consensus 284 ~~Gtpe~v~e~l~~~~~aGv~~~~l~~ 310 (331)
T TIGR03554 284 VASDPDEAVEQVGQYVDWGLNHLVFHA 310 (331)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 356899999999999999999777654
No 197
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=23.03 E-value=64 Score=26.09 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCCeeeee
Q psy6794 15 AEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 15 ~ev~~~~~dl~~~~~d~~tig 35 (165)
+.+.+..+.|++.|+.|.|||
T Consensus 148 ~~~~~~a~~l~~~GI~i~tVG 168 (193)
T cd01477 148 NDPRPIAARLKSTGIAIITVA 168 (193)
T ss_pred CCHHHHHHHHHHCCCEEEEEE
Confidence 457788889999999998886
No 198
>PRK08005 epimerase; Validated
Probab=22.87 E-value=1.1e+02 Score=25.53 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCCe-------------eeeee----ccCCCCC-----CCccccccccc
Q psy6794 14 DAEVQQTLDDLLAAGVDC-------------VTLGQ----YMQPTKK-----HLKVSYRETFV 54 (165)
Q Consensus 14 ~~ev~~~~~dl~~~~~d~-------------~tigq----yl~ps~~-----h~~v~~~~~fV 54 (165)
...+.+.++.|.++|+|. +|+|. .+++... |+-|..+++||
T Consensus 12 ~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i 74 (210)
T PRK08005 12 PLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWL 74 (210)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHH
Confidence 356778889999999886 67773 6665322 66666555554
No 199
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=22.57 E-value=86 Score=29.26 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=25.0
Q ss_pred ecCCCHHHHHHHHHHHHHcC-CCee--eeeeccC
Q psy6794 9 GLGETDAEVQQTLDDLLAAG-VDCV--TLGQYMQ 39 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~-~d~~--tigqyl~ 39 (165)
|++ +.+|-++.|+-|.+.| +|++ ||=||-|
T Consensus 23 G~~-~~~e~~~~l~~l~~~g~~dvl~ltiDsytr 55 (428)
T cd00245 23 GFP-LLEEHIELLRTLQEEGAADVLPLTIDSYTR 55 (428)
T ss_pred CCC-CHHHHHHHHHHHHhcCCCCeeccccccchh
Confidence 775 7889999999999998 9998 4557775
No 200
>PRK03906 mannonate dehydratase; Provisional
Probab=22.55 E-value=79 Score=28.88 Aligned_cols=31 Identities=35% Similarity=0.481 Sum_probs=26.1
Q ss_pred ceeeecCCCHHHHH---HHHHHHHHcCCCeeeee
Q psy6794 5 SIMLGLGETDAEVQ---QTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 5 ~~m~glge~~~ev~---~~~~dl~~~~~d~~tig 35 (165)
.|++|++.-+++|. ++|+.|-.+|+++++..
T Consensus 70 ~Ik~g~~~rd~~ie~y~~sirnlg~~GI~~icYn 103 (385)
T PRK03906 70 DIKTGTPNRDRYIENYKQTLRNLAAAGIKVVCYN 103 (385)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhcCCcEEEec
Confidence 58899999988877 88889999999987753
No 201
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=22.27 E-value=89 Score=20.90 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHHHHHHcC
Q psy6794 11 GETDAEVQQTLDDLLAAG 28 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~ 28 (165)
|||.+|+...-+-+++.+
T Consensus 48 get~~Eiag~~~am~~~a 65 (66)
T PF02885_consen 48 GETPEEIAGFAKAMREHA 65 (66)
T ss_dssp ---HHHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 789999988888888765
No 202
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=22.20 E-value=1.3e+02 Score=27.59 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=28.0
Q ss_pred eeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 6 IMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 6 ~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
||.|| |.|.+++.++++.+.+.+.|=|++=||.
T Consensus 194 LIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~ 227 (416)
T COG0635 194 LIYGLPGQTLESLKEDLEQALELGPDHLSLYSLA 227 (416)
T ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeee
Confidence 46666 8899999999999999999988887764
No 203
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=22.19 E-value=1.3e+02 Score=26.19 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=56.3
Q ss_pred ceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccccC
Q psy6794 5 SIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLRL 83 (165)
Q Consensus 5 ~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rK 83 (165)
-+++.+ |.+.+|..+..+.+.++|+|.+.|-=..-|... ++- +.. .++.+.+.-..++. ....
T Consensus 103 pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~--------~~~-g~~-~~~~~~eil~~v~~------~~~i 166 (334)
T PRK07565 103 PVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDP--------DIS-GAE-VEQRYLDILRAVKS------AVSI 166 (334)
T ss_pred cEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--------CCc-ccc-HHHHHHHHHHHHHh------ccCC
Confidence 356667 778899999999999999999988643222211 111 111 11112111112221 2356
Q ss_pred CccccccCCCCchHHHHHHHHhhcCcccccccc
Q psy6794 84 PPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEA 116 (165)
Q Consensus 84 P~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA 116 (165)
|=|+|.+. .-....++.+.+++.+..-|+.-.
T Consensus 167 PV~vKl~p-~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 167 PVAVKLSP-YFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred cEEEEeCC-CchhHHHHHHHHHHcCCCeEEEEC
Confidence 88888654 223567788888888888776543
No 204
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=22.07 E-value=77 Score=21.39 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=21.5
Q ss_pred ceeeecCCCHHHHHHHHHHHHHcCCCe
Q psy6794 5 SIMLGLGETDAEVQQTLDDLLAAGVDC 31 (165)
Q Consensus 5 ~~m~glge~~~ev~~~~~dl~~~~~d~ 31 (165)
.+.|.|--+++++.++++.|++.|+.+
T Consensus 47 ~l~l~l~g~~~~~~~a~~~L~~~~v~v 73 (76)
T PF09383_consen 47 ILILELPGDDEEIEKAIAYLREQGVEV 73 (76)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHTTEEE
T ss_pred EEEEEEECCHHHHHHHHHHHHHCCCeE
Confidence 356778778888999999999999764
No 205
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=21.95 E-value=1.4e+02 Score=21.41 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=23.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
||-...|....++-|.+.||.++++.+-+
T Consensus 66 l~R~~~e~~~~~~~l~~~gi~l~~~~~~~ 94 (126)
T cd03768 66 LGRSTKDLLEIVEELREKGVSLRSLTEGI 94 (126)
T ss_pred hcCcHHHHHHHHHHHHHCCCEEEEecCCC
Confidence 46667889999999999999999986544
No 206
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.87 E-value=1.5e+02 Score=23.99 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=21.4
Q ss_pred eecC--CCHHHHHHHHHHHHHcCCCeeee
Q psy6794 8 LGLG--ETDAEVQQTLDDLLAAGVDCVTL 34 (165)
Q Consensus 8 ~glg--e~~~ev~~~~~dl~~~~~d~~ti 34 (165)
--.+ .+.+++.+.++.+.++|+|.+.|
T Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 137 DAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred eecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 3445 78888888889899999888764
No 207
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=21.66 E-value=1.1e+02 Score=27.41 Aligned_cols=25 Identities=24% Similarity=0.233 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
|-|.+|..+.++.|.++|||+|.+.
T Consensus 248 g~~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 248 GRDLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 6788999999999999999998663
No 208
>PRK14057 epimerase; Provisional
Probab=21.51 E-value=74 Score=27.60 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=17.5
Q ss_pred HHHHHHHHcCCCeeeeeecc
Q psy6794 19 QTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 19 ~~~~dl~~~~~d~~tigqyl 38 (165)
+++..+.++|+|++..|-|+
T Consensus 205 ~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 205 DQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred HHHHHHHHCCCCEEEEChHh
Confidence 57888999999999999766
No 209
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=21.49 E-value=1e+02 Score=16.17 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHcCC
Q psy6794 13 TDAEVQQTLDDLLAAGV 29 (165)
Q Consensus 13 ~~~ev~~~~~dl~~~~~ 29 (165)
-.+++.+.++++++.||
T Consensus 15 ~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 15 QFEEALEVFDEMRERGI 31 (31)
T ss_pred hHHHHHHHHHHHhHCcC
Confidence 35789999999998886
No 210
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=21.45 E-value=1.1e+02 Score=22.46 Aligned_cols=90 Identities=16% Similarity=0.073 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccccCCccccccC
Q psy6794 12 ETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKI 91 (165)
Q Consensus 12 e~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rKP~WLRvs~ 91 (165)
.+.+||.+.++..++.++.+...|.--.....-..-. .-.|.. ..+.... .+..+. . .+.+
T Consensus 8 ~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~~--~ivi~~-----~~l~~i~-~id~~~---------~--~v~v 68 (139)
T PF01565_consen 8 KSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDEG--GIVIDM-----SRLNKII-EIDPEN---------G--TVTV 68 (139)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSSTT--EEEEEC-----TTCGCEE-EEETTT---------T--EEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccCC--cEEEee-----ccccccc-cccccc---------e--eEEE
Confidence 5789999999999999999999985222221100000 011111 0111100 011111 1 3455
Q ss_pred CCCchHHHHHHHHhhcCccccccccCCCC
Q psy6794 92 PTGSQFAKVKEQLRTLNLHTVCEEARCPN 120 (165)
Q Consensus 92 pag~~~~~V~~~l~~~~L~TVCeeA~CPN 120 (165)
.++-.+.++.+.|..+++-.-.+-..|+.
T Consensus 69 ~aG~~~~~l~~~l~~~g~~~~~~~~~~~~ 97 (139)
T PF01565_consen 69 GAGVTWGDLYEALAPRGLMLPVEPGSGIP 97 (139)
T ss_dssp ETTSBHHHHHHHHHHHTEEESSGGGSTTT
T ss_pred eccccchhccccccccccccccccccccc
Confidence 66888999999999998887777666664
No 211
>PF07868 DUF1655: Protein of unknown function (DUF1655); InterPro: IPR012450 This entry is represented by Bacteriophage bIL310, Orf15. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this family have unknown function and are found in some Lactococcus lactis prophages [].
Probab=21.34 E-value=56 Score=22.12 Aligned_cols=13 Identities=23% Similarity=0.023 Sum_probs=10.5
Q ss_pred Ccceeeeeeeccc
Q psy6794 130 HGTSTATIMSGLD 142 (165)
Q Consensus 130 ~~~aT~~im~~~~ 142 (165)
++-||||.|+++-
T Consensus 36 ~SV~TFT~~~N~~ 48 (55)
T PF07868_consen 36 QSVVTFTTMENNI 48 (55)
T ss_pred ceEEEEEEecCcE
Confidence 4689999999763
No 212
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.31 E-value=1.5e+02 Score=18.58 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=23.5
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
|+.+...-..+.++.|.++|+++..|.|=.
T Consensus 10 ~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 10 GMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred CCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 344556667788999999999999998744
No 213
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=21.30 E-value=86 Score=26.11 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=28.4
Q ss_pred eeeecCCCHHHHHHHHHHHHHcCCC---eeeeeeccCCCCCC
Q psy6794 6 IMLGLGETDAEVQQTLDDLLAAGVD---CVTLGQYMQPTKKH 44 (165)
Q Consensus 6 ~m~glge~~~ev~~~~~dl~~~~~d---~~tigqyl~ps~~h 44 (165)
+.+++||..+||.+..+++.+.++- ++...+-=.|...|
T Consensus 45 V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r 86 (215)
T PF00006_consen 45 VYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAAR 86 (215)
T ss_dssp EEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHH
T ss_pred eeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHH
Confidence 7899999999999999999987654 45555544444333
No 214
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.26 E-value=1.4e+02 Score=20.15 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=31.9
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCC
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKK 43 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~ 43 (165)
++|++-+......+.++|..+.+.|+++.-|-. ||++.
T Consensus 1 tsl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeS--RP~~~ 38 (74)
T cd04904 1 TSLIFSLKEEVGALARALKLFEEFGVNLTHIES--RPSRR 38 (74)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEC--CCCCC
Confidence 467888888888999999999999999999854 66654
No 215
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc.
Probab=21.26 E-value=55 Score=28.51 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCCeeeeeeccCCC
Q psy6794 14 DAEVQQTLDDLLAAGVDCVTLGQYMQPT 41 (165)
Q Consensus 14 ~~ev~~~~~dl~~~~~d~~tigqyl~ps 41 (165)
.+|+.++++.+.+.++|++=||+|++..
T Consensus 308 ~~~~~~~i~k~Q~~~~D~~g~g~~~~~~ 335 (371)
T TIGR02887 308 EKEIEQLIKKLQKYKIDPLGLGDELYRK 335 (371)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHh
Confidence 3577788899989999999999999543
No 216
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=21.17 E-value=1.8e+02 Score=24.50 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=29.6
Q ss_pred cceeeecCC-CHHHHHHHHHHHHHcCCCeeeee-e-ccCCC
Q psy6794 4 SSIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG-Q-YMQPT 41 (165)
Q Consensus 4 s~~m~glge-~~~ev~~~~~dl~~~~~d~~tig-q-yl~ps 41 (165)
--+++|.|. +.+|.++..+...++|+|-+.+. . |..||
T Consensus 68 ~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~ 108 (285)
T TIGR00674 68 VPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPT 108 (285)
T ss_pred CeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCC
Confidence 357899995 78999999999999999966554 2 44444
No 217
>PRK01254 hypothetical protein; Provisional
Probab=21.15 E-value=1.1e+02 Score=30.58 Aligned_cols=38 Identities=13% Similarity=0.048 Sum_probs=29.6
Q ss_pred ceeee-cCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCC
Q psy6794 5 SIMLG-LGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKK 43 (165)
Q Consensus 5 ~~m~g-lge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~ 43 (165)
-+|+| -|||+++..++++-|++.+.+.-.+- =+-|++.
T Consensus 562 yfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ-~FTPtP~ 600 (707)
T PRK01254 562 YFISAHPGTTDEDMVNLALWLKKNRFRLDQVQ-NFYPSPM 600 (707)
T ss_pred eEEEECCCCCHHHHHHHHHHHHHhCCCcceee-eeecCCC
Confidence 47999 89999999999999999998764432 2236654
No 218
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=21.04 E-value=1.2e+02 Score=20.75 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.4
Q ss_pred ceeeecCCCHHHHHHHHHHHHHcCC
Q psy6794 5 SIMLGLGETDAEVQQTLDDLLAAGV 29 (165)
Q Consensus 5 ~~m~glge~~~ev~~~~~dl~~~~~ 29 (165)
|-.+|+=+..+++.+.|+.||..|.
T Consensus 5 G~~iG~~~~p~~l~~~lr~~RR~g~ 29 (63)
T PF04566_consen 5 GVWIGIHSDPEELVKTLRNLRRSGK 29 (63)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CEEEEEEcCHHHHHHHHHHHhhccC
Confidence 6678998999999999999999983
No 219
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=20.79 E-value=95 Score=26.54 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCCeeeeeeccC
Q psy6794 18 QQTLDDLLAAGVDCVTLGQYMQ 39 (165)
Q Consensus 18 ~~~~~dl~~~~~d~~tigqyl~ 39 (165)
.++...+.++|+|++..|-|+=
T Consensus 180 ~~t~~~~~~AGad~~VaGSalF 201 (220)
T COG0036 180 LETIKQLAAAGADVFVAGSALF 201 (220)
T ss_pred HHHHHHHHHcCCCEEEEEEEEe
Confidence 3678889999999999998763
No 220
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=20.66 E-value=52 Score=28.18 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=37.1
Q ss_pred cC-CCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhc
Q psy6794 10 LG-ETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYD 68 (165)
Q Consensus 10 lg-e~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~ 68 (165)
|| |+..|...+|-||.+.-=--+-|-=|+-||.. .-++.|+..+.-+++.+.+.+
T Consensus 22 lG~~sl~ea~~~~ldlia~ar~~~~iscyiPPsVY----~El~~fm~r~gc~~e~~~ki~ 77 (221)
T COG1458 22 LGYESLCEAMKTFLDLIARARLKLGISCYIPPSVY----RELMGFMERNGCPEEVIAKIE 77 (221)
T ss_pred hccccHHHHHHHHHHHHHHhhhhcCeEEEeChHHH----HHHHHHHHhCCCcHHHHHhhh
Confidence 67 88999999999988753324556668877643 124588887666556655554
No 221
>KOG1643|consensus
Probab=20.65 E-value=1.7e+02 Score=25.41 Aligned_cols=116 Identities=24% Similarity=0.291 Sum_probs=70.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCC-eeeeeeccCC--CCCCCccccccccccCCCCccchhhhhccccccccCccccccCCcc
Q psy6794 10 LGETDAEVQQTLDDLLAAGVD-CVTLGQYMQP--TKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPW 86 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d-~~tigqyl~p--s~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rKP~W 86 (165)
+||+++-|-+-..-.++.|.. |.-||.=|.- .-+|+.|. +.+..++..+++.-.+-- -.--|-|
T Consensus 101 fgEsd~~i~~K~~~Al~eGl~ViaCIGE~leeREaG~t~dVv------------~~Ql~aiad~v~~w~niv-iAYEPVW 167 (247)
T KOG1643|consen 101 FGESDEFIADKTAHALAEGLKVIACIGETLEEREAGKTLDVV------------FRQLKAIADKVKDWSNIV-IAYEPVW 167 (247)
T ss_pred hCCchHHHHHHHHHHHHcCCeEEEEecccHHhhhcCchHHHH------------HHHHHHHHHhcCCccceE-EEeecee
Confidence 799999999999999999999 5679987743 45677775 334444444333222200 0112567
Q ss_pred c--cccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccchhhhh
Q psy6794 87 L--KTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETVEK 153 (165)
Q Consensus 87 L--Rvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~~~~~ 153 (165)
- -=+.+.+++.++++.-+|.-.-..|-.+ - .++-=|.-+|.|=.-||.+.-+
T Consensus 168 AIGTGk~atp~QaqEVh~~iR~wl~~~vs~~---------V------a~~~RIiYGGSV~g~N~~el~~ 221 (247)
T KOG1643|consen 168 AIGTGKTATPEQAQEVHAEIRKWLKSNVSDA---------V------ASSTRIIYGGSVNGGNCKELAK 221 (247)
T ss_pred eecCCCCCCHHHHHHHHHHHHHHHhhcchhh---------h------hhceEEEeccccccccHHHhcc
Confidence 5 2345677889999888876433222111 1 1222455557887888876543
No 222
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=20.37 E-value=1.8e+02 Score=22.66 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=21.2
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
.|++++ +...+.+.+.++.|++.|+.+++++...
T Consensus 57 dgii~~-~~~~~~~~~~l~~l~~~~ipvv~~~~~~ 90 (268)
T cd06323 57 DAIIIN-PTDSDAVVPAVKAANEAGIPVFTIDREA 90 (268)
T ss_pred CEEEEc-CCChHHHHHHHHHHHHCCCcEEEEccCC
Confidence 355654 3333344566777777888888887654
No 223
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=20.34 E-value=1.7e+02 Score=26.33 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCCeeeeee-----ccCCCCCCCccc-cccccccCCCCccchhhhhccccccccCccccccCCccc
Q psy6794 14 DAEVQQTLDDLLAAGVDCVTLGQ-----YMQPTKKHLKVS-YRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWL 87 (165)
Q Consensus 14 ~~ev~~~~~dl~~~~~d~~tigq-----yl~ps~~h~~v~-~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rKP~WL 87 (165)
.+.+.+.|++|.+.|+|-|.++. |++--.-++|++ |-|-.|+. ....+-|+ +.|.+
T Consensus 78 ~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N----~~~~~f~~-----~~G~~--------- 139 (347)
T COG0826 78 LETLERYLDRLVELGVDAVIVADPGLIMLARERGPDLPIHVSTQANVTN----AETAKFWK-----ELGAK--------- 139 (347)
T ss_pred hhHHHHHHHHHHHcCCCEEEEcCHHHHHHHHHhCCCCcEEEeeeEecCC----HHHHHHHH-----HcCCE---------
Confidence 45588999999999999999884 666444456664 44556652 23333333 34543
Q ss_pred cccCCCCchHHHHHHHHhhcC
Q psy6794 88 KTKIPTGSQFAKVKEQLRTLN 108 (165)
Q Consensus 88 Rvs~pag~~~~~V~~~l~~~~ 108 (165)
|+-+|.--+..+++++.+...
T Consensus 140 rvVl~rEls~~ei~~i~~~~~ 160 (347)
T COG0826 140 RVVLPRELSLEEIKEIKEQTP 160 (347)
T ss_pred EEEeCccCCHHHHHHHHHhCC
Confidence 333444445677777777663
No 224
>PF00239 Resolvase: Resolvase, N terminal domain; InterPro: IPR006119 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA, and a C-terminal helix-turn-helix DNA-binding domain IPR006120 from INTERPRO. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 3PLO_X 3BVP_B 2RSL_C 1ZR2_A 2GM4_B 2GM5_D 1ZR4_A 1GDT_B 1HX7_A 1GHT_A ....
Probab=20.25 E-value=98 Score=22.48 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
||-...|....+..|.+.||.++++-+
T Consensus 71 l~R~~~~~~~~~~~l~~~gv~l~~~~~ 97 (141)
T PF00239_consen 71 LGRDPRELLELLEQLRKKGVRLHSVDE 97 (141)
T ss_dssp CSSSHHHHHHHHHHHHHTTEEEEETTT
T ss_pred ccccccccccccccccccccceeeccc
Confidence 677889999999999999999998764
No 225
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=20.24 E-value=1e+02 Score=26.22 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=27.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCC-eeeeeeccC
Q psy6794 10 LGETDAEVQQTLDDLLAAGVD-CVTLGQYMQ 39 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d-~~tigqyl~ 39 (165)
+|||++.|.+.++.+.++|.. |+-||..+.
T Consensus 99 f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~ 129 (242)
T cd00311 99 FGETDEDVAKKVKAALEAGLTPILCVGETLE 129 (242)
T ss_pred CCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 799999999999999999997 889998763
No 226
>TIGR03842 F420_CPS_4043 F420-dependent oxidoreductase, CPS_4043 family. This model represents a family of putative F420-dependent oxidoreductases, fairly closely related to 5,10-methylenetetrahydromethanopterin reductase (mer, TIGR03555), both within the bacterial luciferase-like monoxygenase (LLM) family. A fairly deep split (to about 40 % sequence identity) in the present family separates a strictly Actinobacterial clade from an alpha/beta/gamma-proteobacterial clade, in which the member is often the only apparent F420-dependent LLM family member. The specific function, and whether Actinobacterial and Proteobacterial clades differ in function, are unknown.
Probab=20.23 E-value=1.2e+02 Score=26.18 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
+--|.|||.+-|+++.++||+-+.+.
T Consensus 284 ~~Gtpe~v~e~l~~~~~~Gv~~~~l~ 309 (330)
T TIGR03842 284 VLGPAEAHIEKLRELRALGVDQFAIY 309 (330)
T ss_pred cCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 44578999999999999999977764
No 227
>TIGR03557 F420_G6P_family F420-dependent oxidoreductase, G6PDH family. Members of this protein family include F420-dependent glucose-6-phosphate dehydrogenases (TIGR03554) and related proteins. All members of this family come from species that synthesize coenzyme F420.
Probab=20.20 E-value=1.4e+02 Score=25.81 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tig 35 (165)
.|-|.|||.+-|+++.++|||-+.+.
T Consensus 268 ~ggtpe~~~~~l~~~~~aG~d~~~l~ 293 (316)
T TIGR03557 268 CGPDPDRHVEAVREYVDAGFDEVALV 293 (316)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 56689999999999999999977764
No 228
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=20.20 E-value=47 Score=25.47 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.6
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcCCC
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAGVD 30 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~~d 30 (165)
+.|+.|+=..++-+-+.+..|.+||.|
T Consensus 90 ~~L~~G~vd~e~~~~~~~~kLk~AGid 116 (134)
T PF12010_consen 90 PPLETGLVDPEEALPEFNEKLKAAGID 116 (134)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHhChH
Confidence 568889988888888999999999987
No 229
>TIGR03620 F420_MSMEG_4141 probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria.
Probab=20.18 E-value=1.4e+02 Score=25.68 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=24.0
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
.+--|.+||.+-|++++++|||-+.+..
T Consensus 231 ~i~Gtp~ev~e~l~~~~~aGvd~l~l~~ 258 (278)
T TIGR03620 231 VAWGDADTVAARVREHLDAGADHVAVQV 258 (278)
T ss_pred eeeCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 3557899999999999999999877765
No 230
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.03 E-value=1.4e+02 Score=26.23 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHcCCCeeeee
Q psy6794 13 TDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 13 ~~~ev~~~~~dl~~~~~d~~tig 35 (165)
..|...+.|+.|.++|+|++=||
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELG 51 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELG 51 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEec
Confidence 67888999999999999999999
Done!