Query psy6794
Match_columns 165
No_of_seqs 307 out of 1392
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 18:32:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t7v_A Methylornithine synthas 95.4 0.015 5.1E-07 48.7 4.7 37 3-39 205-241 (350)
2 2qgq_A Protein TM_1862; alpha- 94.2 0.045 1.5E-06 45.3 4.4 35 4-38 159-194 (304)
3 3iix_A Biotin synthetase, puta 92.9 0.086 2.9E-06 43.5 4.1 36 3-38 195-231 (348)
4 1r30_A Biotin synthase; SAM ra 92.3 0.13 4.3E-06 43.5 4.3 35 4-38 212-248 (369)
5 1olt_A Oxygen-independent copr 92.2 0.15 5E-06 44.7 4.7 35 4-38 208-243 (457)
6 3nn1_A Chlorite dismutase; fer 57.3 2.5 8.4E-05 35.1 0.3 49 4-57 68-117 (241)
7 2vxh_A Chlorite dismutase; hem 41.6 6.2 0.00021 32.9 0.3 42 10-56 83-124 (251)
8 1xm3_A Thiazole biosynthesis p 41.0 16 0.00056 29.6 2.8 33 3-36 12-44 (264)
9 3e96_A Dihydrodipicolinate syn 40.0 30 0.001 28.7 4.3 39 4-42 82-122 (316)
10 2ekg_A Proline dehydrogenase/d 38.3 22 0.00077 30.3 3.3 28 10-39 57-84 (327)
11 3d0c_A Dihydrodipicolinate syn 35.9 43 0.0015 27.8 4.6 38 5-42 83-122 (314)
12 1vem_A Beta-amylase; beta-alph 34.4 34 0.0012 30.8 4.0 42 6-47 15-65 (516)
13 1xky_A Dihydrodipicolinate syn 34.0 59 0.002 26.8 5.2 38 5-42 83-123 (301)
14 2ehh_A DHDPS, dihydrodipicolin 33.3 62 0.0021 26.4 5.2 38 5-42 71-111 (294)
15 3cpr_A Dihydrodipicolinate syn 33.0 62 0.0021 26.6 5.2 38 5-42 87-127 (304)
16 1ypx_A Putative vitamin-B12 in 32.6 24 0.00083 30.1 2.6 27 14-40 43-69 (375)
17 3pzg_A Mannan endo-1,4-beta-ma 32.3 24 0.00083 30.4 2.6 35 12-46 40-87 (383)
18 3a5f_A Dihydrodipicolinate syn 32.3 65 0.0022 26.3 5.1 38 5-42 72-112 (291)
19 2wkj_A N-acetylneuraminate lya 32.0 58 0.002 26.8 4.8 38 5-42 82-122 (303)
20 1o5k_A DHDPS, dihydrodipicolin 31.9 59 0.002 26.8 4.8 38 5-42 83-123 (306)
21 3m5v_A DHDPS, dihydrodipicolin 31.6 67 0.0023 26.4 5.1 39 4-42 78-119 (301)
22 1m3s_A Hypothetical protein YC 31.3 39 0.0013 24.8 3.3 26 11-37 90-115 (186)
23 3qze_A DHDPS, dihydrodipicolin 31.3 67 0.0023 26.7 5.1 39 4-42 93-134 (314)
24 4h6q_A Proline dehydrogenase; 31.3 32 0.0011 29.1 3.1 21 10-30 38-58 (312)
25 3tjl_A NADPH dehydrogenase; OL 30.8 35 0.0012 30.0 3.4 32 13-44 158-205 (407)
26 3na8_A Putative dihydrodipicol 30.7 63 0.0021 26.9 4.8 39 4-42 94-135 (315)
27 3dtz_A Putative chlorite dismu 30.7 7 0.00024 32.5 -1.1 43 9-57 83-125 (244)
28 1fx0_B ATP synthase beta chain 30.2 24 0.00082 32.0 2.3 44 5-48 197-250 (498)
29 2vc6_A MOSA, dihydrodipicolina 30.1 73 0.0025 26.0 5.1 38 5-42 71-111 (292)
30 1f6k_A N-acetylneuraminate lya 29.9 68 0.0023 26.2 4.8 38 5-42 75-115 (293)
31 2yxg_A DHDPS, dihydrodipicolin 29.9 67 0.0023 26.2 4.8 38 5-42 71-111 (289)
32 1xg4_A Probable methylisocitra 29.8 50 0.0017 27.6 4.1 38 9-46 88-126 (295)
33 3tak_A DHDPS, dihydrodipicolin 29.5 68 0.0023 26.1 4.8 39 4-42 71-112 (291)
34 3flu_A DHDPS, dihydrodipicolin 29.1 78 0.0027 25.9 5.1 38 5-42 78-118 (297)
35 1jeo_A MJ1247, hypothetical pr 28.9 49 0.0017 24.1 3.5 26 11-37 93-118 (180)
36 3ju3_A Probable 2-oxoacid ferr 28.8 59 0.002 23.0 3.8 35 6-40 17-52 (118)
37 2rfg_A Dihydrodipicolinate syn 28.8 65 0.0022 26.4 4.6 38 5-42 71-111 (297)
38 3gxv_A Replicative DNA helicas 28.5 19 0.00065 26.0 1.1 28 14-41 45-74 (123)
39 3sho_A Transcriptional regulat 28.3 58 0.002 23.7 3.8 27 11-38 98-124 (187)
40 2fqm_A Phosphoprotein, P prote 27.8 6 0.0002 27.5 -1.7 19 109-127 40-58 (75)
41 2ck3_D ATP synthase subunit be 27.6 29 0.00098 31.4 2.3 44 5-48 185-237 (482)
42 3dhx_A Methionine import ATP-b 27.6 61 0.0021 22.6 3.7 35 6-40 67-101 (106)
43 1t0t_V APC35880; pentamer, ico 27.2 22 0.00075 29.5 1.4 43 9-56 74-116 (248)
44 3si9_A DHDPS, dihydrodipicolin 27.2 86 0.0029 26.1 5.1 39 4-42 92-133 (315)
45 4hqf_A Thrombospondin-related 27.0 35 0.0012 27.0 2.5 30 6-35 133-164 (281)
46 2r91_A 2-keto-3-deoxy-(6-phosp 26.9 85 0.0029 25.5 4.9 37 6-42 67-107 (286)
47 3l21_A DHDPS, dihydrodipicolin 26.6 81 0.0028 26.0 4.8 38 5-42 86-126 (304)
48 1ijb_A VON willebrand factor; 26.3 23 0.0008 26.5 1.3 31 6-36 120-154 (202)
49 2r8w_A AGR_C_1641P; APC7498, d 25.9 72 0.0025 26.7 4.4 38 5-42 105-145 (332)
50 2v9d_A YAGE; dihydrodipicolini 25.7 84 0.0029 26.5 4.8 38 5-42 102-142 (343)
51 1vyr_A Pentaerythritol tetrani 25.6 32 0.0011 29.2 2.1 32 13-44 152-198 (364)
52 3daq_A DHDPS, dihydrodipicolin 25.3 90 0.0031 25.4 4.8 39 4-42 72-113 (292)
53 2nuw_A 2-keto-3-deoxygluconate 25.2 88 0.003 25.5 4.7 37 6-42 68-108 (288)
54 2xbl_A Phosphoheptose isomeras 24.9 58 0.002 23.9 3.3 26 11-37 127-152 (198)
55 3eb2_A Putative dihydrodipicol 24.9 70 0.0024 26.3 4.0 38 5-42 75-115 (300)
56 2x5n_A SPRPN10, 26S proteasome 24.8 51 0.0017 25.3 3.0 24 12-35 119-142 (192)
57 2ojp_A DHDPS, dihydrodipicolin 24.4 65 0.0022 26.3 3.7 38 5-42 72-112 (292)
58 1gdt_A GD resolvase, protein ( 24.0 54 0.0019 24.4 3.0 28 10-37 69-96 (183)
59 3dz1_A Dihydrodipicolinate syn 23.9 86 0.0029 25.9 4.4 38 4-41 77-116 (313)
60 2pcq_A Putative dihydrodipicol 23.9 75 0.0026 25.8 4.0 38 5-42 64-105 (283)
61 3fkr_A L-2-keto-3-deoxyarabona 23.8 97 0.0033 25.6 4.8 39 4-42 78-122 (309)
62 3b4u_A Dihydrodipicolinate syn 23.8 97 0.0033 25.3 4.7 38 5-42 74-115 (294)
63 2jwk_A Protein TOLR; periplasm 23.5 64 0.0022 20.2 2.9 18 13-30 57-74 (74)
64 2xgg_A Microneme protein 2; A/ 23.4 53 0.0018 23.9 2.8 31 6-36 127-159 (178)
65 1tk9_A Phosphoheptose isomeras 23.3 72 0.0025 23.2 3.5 26 11-37 121-146 (188)
66 2gm5_A Transposon gamma-delta 23.2 52 0.0018 23.7 2.7 27 10-36 68-94 (139)
67 3pkz_A Recombinase SIN; small 22.6 53 0.0018 23.1 2.5 27 10-36 67-93 (124)
68 2gou_A Oxidoreductase, FMN-bin 22.5 51 0.0017 28.0 2.8 32 13-44 152-198 (365)
69 3tty_A Beta-GAL, beta-galactos 22.4 43 0.0015 30.9 2.4 34 13-46 21-58 (675)
70 3etn_A Putative phosphosugar i 22.4 67 0.0023 24.7 3.3 26 11-37 117-144 (220)
71 3kru_A NADH:flavin oxidoreduct 22.0 69 0.0024 27.1 3.5 33 13-45 134-181 (343)
72 1zlp_A PSR132, petal death pro 21.9 95 0.0032 26.3 4.4 37 9-46 111-148 (318)
73 1w3i_A EDA, 2-keto-3-deoxy glu 21.9 94 0.0032 25.4 4.2 37 6-42 68-108 (293)
74 3guv_A Site-specific recombina 21.8 58 0.002 23.8 2.7 27 10-36 87-113 (167)
75 1z69_A COG2141, coenzyme F420- 21.6 90 0.0031 25.1 4.0 24 12-35 283-306 (327)
76 4hqo_A Sporozoite surface prot 21.6 55 0.0019 25.8 2.7 30 6-35 130-161 (266)
77 3ej6_A Catalase-3; heme, hydro 21.4 58 0.002 30.8 3.1 38 2-39 538-576 (688)
78 4h3d_A 3-dehydroquinate dehydr 21.4 54 0.0018 26.6 2.6 29 11-39 28-57 (258)
79 2r14_A Morphinone reductase; H 21.2 39 0.0014 28.9 1.8 32 13-44 157-203 (377)
80 2pfu_A Biopolymer transport EX 21.1 83 0.0029 20.8 3.2 23 13-35 69-91 (99)
81 2g2c_A Putative molybdenum cof 21.0 82 0.0028 23.5 3.5 34 10-43 51-84 (167)
82 1x67_A Drebrin-like protein; c 20.6 91 0.0031 22.8 3.6 43 4-48 6-50 (146)
83 3uj3_X DNA-invertase; helix-tu 20.5 65 0.0022 24.2 2.8 27 10-36 66-92 (193)
84 3g13_A Putative conjugative tr 20.3 49 0.0017 24.2 2.0 27 10-36 87-113 (169)
85 2pju_A Propionate catabolism o 20.1 78 0.0027 25.3 3.3 24 12-35 138-161 (225)
No 1
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=95.41 E-value=0.015 Score=48.69 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=33.9
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccC
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQ 39 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ 39 (165)
.+++|+|+|||.+++.+.++.|++.+++.+.+..|.-
T Consensus 205 ~~~~i~Glget~e~~~~~l~~l~~l~~~~v~~~~f~p 241 (350)
T 3t7v_A 205 EDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLP 241 (350)
T ss_dssp EEEEEESSSCCHHHHHHHHHHHHHTCCSEEEEEECCC
T ss_pred ccceEeecCCCHHHHHHHHHHHHhCCCCEEEecceee
Confidence 4789999999999999999999999999988887764
No 2
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=94.17 E-value=0.045 Score=45.30 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=32.4
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
+.+|+|+ |||++++.++++-+++.++|.+.+-.|.
T Consensus 159 ~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~ 194 (304)
T 2qgq_A 159 TSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYS 194 (304)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5789999 9999999999999999999998888875
No 3
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=92.94 E-value=0.086 Score=43.51 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=33.4
Q ss_pred ccceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 3 ESSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 3 ks~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
.+++|+|+ |||.+++.+.++-|++.|++.+.++.|.
T Consensus 195 ~~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~ 231 (348)
T 3iix_A 195 GAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFI 231 (348)
T ss_dssp EECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECC
T ss_pred ccceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeee
Confidence 46899999 9999999999999999999999998875
No 4
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=92.26 E-value=0.13 Score=43.47 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=31.0
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcC--CCeeeeeecc
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAG--VDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~--~d~~tigqyl 38 (165)
+++|+|+|||.+++.++++.|++.+ ++.+.+..+.
T Consensus 212 ~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~ 248 (369)
T 1r30_A 212 SGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLV 248 (369)
T ss_dssp CCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECC
T ss_pred eeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeee
Confidence 6799999999999999999999998 7777777654
No 5
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=92.17 E-value=0.15 Score=44.73 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=33.2
Q ss_pred cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
..+|+|| |||.+++.++++.+.+.++|-+.+-+|.
T Consensus 208 ~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~ 243 (457)
T 1olt_A 208 IDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYA 243 (457)
T ss_dssp EEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCc
Confidence 5689999 9999999999999999999999999987
No 6
>3nn1_A Chlorite dismutase; ferredoxin like fold, chlorite dismutation, periplasmatic, oxidoreductase; HET: HEM; 1.85A {Candidatus nitrospira defluvii} PDB: 3nn2_A* 3nn4_A* 3nn3_A*
Probab=57.30 E-value=2.5 Score=35.12 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=41.3
Q ss_pred cceee-ecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCC
Q psy6794 4 SSIML-GLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQP 57 (165)
Q Consensus 4 s~~m~-glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~ 57 (165)
+-||+ =++++.+++.++..+++.. .||+||.|+..-+.|.+...|+++.
T Consensus 68 aDlm~w~~~~~~~~lq~~~~~f~~t-----~lg~~l~p~~S~~sv~~~s~Y~~~~ 117 (241)
T 3nn1_A 68 ADLMFRVHARTLSDTQQFLSAFMGT-----RLGRHLTSGGLLHGVSKKPTYVAGF 117 (241)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHTS-----TTGGGEEEEEEEEEECCCCSSGGGS
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHhh-----hhhcccccceEEEEeeccccccCCc
Confidence 34444 4799999999999999974 7999999999988888888999754
No 7
>2vxh_A Chlorite dismutase; heme-based enzyme, oxidoreductase, chlorate respiration, molecular oxygen production; HET: HEM; 2.10A {Azospira oryzae} PDB: 3q09_A* 3q08_A* 3m2s_A* 3m2q_A*
Probab=41.60 E-value=6.2 Score=32.87 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=36.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccC
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQ 56 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~ 56 (165)
++++.+++.++..+|+.. .||+||.|+..-+.|.+...|+..
T Consensus 83 ~~~~~e~lq~~~~~f~rt-----~lg~~l~p~~S~~sv~~~s~Y~~~ 124 (251)
T 2vxh_A 83 NAYDLAKAQTFMREFRST-----TIGKNADVFETLVGVTKPLNYISK 124 (251)
T ss_dssp EESSHHHHHHHHHHHHTS-----TTGGGEEEEEEEEEECCCCSSSST
T ss_pred eCCCHHHHHHHHHHHHhc-----ccccccccceEEEEEeeccccccc
Confidence 589999999999999985 799999999888888877789863
No 8
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=41.02 E-value=16 Score=29.55 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=24.5
Q ss_pred ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
||-+|+|-|-- -....+++.|.++|+|+++||=
T Consensus 12 ~~~~~~~t~g~-p~~~~~~~~l~~~Gad~ielg~ 44 (264)
T 1xm3_A 12 QSRLLLGTGKY-PSFDIQKEAVAVSESDILTFAV 44 (264)
T ss_dssp SCCEEEECSCS-SCHHHHHHHHHHHTCSEEEEET
T ss_pred cCCCEEEecCC-CCHHHHHHHHHHcCCeEEEEcc
Confidence 68899998854 2333445778888999999993
No 9
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=39.99 E-value=30 Score=28.74 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=31.5
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
--+|+|.|.+-+|.++..+...++|+|-+-+. -|-.||.
T Consensus 82 vpViaGvg~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~ 122 (316)
T 3e96_A 82 ALVVAGIGYATSTAIELGNAAKAAGADAVMIHMPIHPYVTA 122 (316)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHHTCSEEEECCCCCSCCCH
T ss_pred CcEEEEeCcCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCH
Confidence 35899999999999999999999999965554 3555554
No 10
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; flavoenzyme, prodh, beta-alpha-barrel inhibitor, inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus thermophilus} PDB: 2g37_A*
Probab=38.30 E-value=22 Score=30.28 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=23.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeeeccC
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQYMQ 39 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigqyl~ 39 (165)
.|||.+|+.+++++|++.|+. +++ .||-
T Consensus 57 aGet~~ea~~~~~~l~~~G~~-~~l-d~lg 84 (327)
T 2ekg_A 57 AGETLEEALKAAEALEREGVH-AIL-DLLG 84 (327)
T ss_dssp CCSSHHHHHHHHHHHHHTTCE-EEE-EEEC
T ss_pred CCCCHHHHHHHHHHHHhCCCE-EEE-eccc
Confidence 699999999999999999998 444 3443
No 11
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=35.86 E-value=43 Score=27.81 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=30.8
Q ss_pred ceeeecCCCHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGETDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|.+-+|.++..+...++|+|-+-+- -|..||.
T Consensus 83 pViaGvg~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~ 122 (314)
T 3d0c_A 83 TVVAGIGYSVDTAIELGKSAIDSGADCVMIHQPVHPYITD 122 (314)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHTTCSEEEECCCCCSCCCH
T ss_pred eEEecCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCH
Confidence 4899999988999999999999999955443 3666764
No 12
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=34.42 E-value=34 Score=30.75 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=32.3
Q ss_pred eeeecC-----CCHHHHHHHHHHHHHcCCCeeeeee---ccCCC-CCCCcc
Q psy6794 6 IMLGLG-----ETDAEVQQTLDDLLAAGVDCVTLGQ---YMQPT-KKHLKV 47 (165)
Q Consensus 6 ~m~glg-----e~~~ev~~~~~dl~~~~~d~~tigq---yl~ps-~~h~~v 47 (165)
+||.|+ -..+...+-|+.|+++|++.+.++= .+.|. +..+-.
T Consensus 15 vmlp~~~v~~~~~~~~w~~dl~~mk~~Gln~Vr~~V~W~~iEP~g~G~ydf 65 (516)
T 1vem_A 15 LMAPLKKIPEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65 (516)
T ss_dssp EECCSSCGGGTSCHHHHHHHHHHHHHTTEEEEEEEEEHHHHTCSSTTCCCC
T ss_pred EEecccccCCCCCHHHHHHHHHHHHHcCCCEEEEecchhhccCCCCCccch
Confidence 577774 4678999999999999999999984 46777 554443
No 13
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=34.00 E-value=59 Score=26.76 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=30.4
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|..||.
T Consensus 83 pViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~ 123 (301)
T 1xky_A 83 PVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQ 123 (301)
T ss_dssp CEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH
T ss_pred eEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCH
Confidence 48999997 78999999999999999955443 3666664
No 14
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=33.29 E-value=62 Score=26.42 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=30.3
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|.+||.
T Consensus 71 pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~ 111 (294)
T 2ehh_A 71 KVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQ 111 (294)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH
T ss_pred cEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCH
Confidence 48999997 77999999999999999955443 3556664
No 15
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=33.01 E-value=62 Score=26.64 Aligned_cols=38 Identities=18% Similarity=0.390 Sum_probs=30.3
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|.+||.
T Consensus 87 pviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~ 127 (304)
T 3cpr_A 87 KLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQ 127 (304)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH
T ss_pred cEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCH
Confidence 48999997 78999999999999999955443 3666764
No 16
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=32.65 E-value=24 Score=30.12 Aligned_cols=27 Identities=15% Similarity=0.423 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCCeeeeeeccCC
Q psy6794 14 DAEVQQTLDDLLAAGVDCVTLGQYMQP 40 (165)
Q Consensus 14 ~~ev~~~~~dl~~~~~d~~tigqyl~p 40 (165)
+++|.+++++-.++|+|++|=|++=|.
T Consensus 43 ~~~i~~~v~~Q~~~GldvvtdGE~~R~ 69 (375)
T 1ypx_A 43 NTEIKYIVEKQKEVGLKSITDGEFRRA 69 (375)
T ss_dssp HHHHHHHHHHHHHHTCSEECCTTTTC-
T ss_pred HHHHHHHHHHHHHhCCCcccCCCcchh
Confidence 467888999999999999999997654
No 17
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A*
Probab=32.34 E-value=24 Score=30.44 Aligned_cols=35 Identities=14% Similarity=0.362 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeee-------------eccCCCCCCCc
Q psy6794 12 ETDAEVQQTLDDLLAAGVDCVTLG-------------QYMQPTKKHLK 46 (165)
Q Consensus 12 e~~~ev~~~~~dl~~~~~d~~tig-------------qyl~ps~~h~~ 46 (165)
.+.++|.+.|+.++++|+++|.+. .|+||++-.+.
T Consensus 40 ~~~~~i~~~l~~~a~~G~N~VRv~~f~d~~~~~~~~~~~lqp~~G~yd 87 (383)
T 3pzg_A 40 KSNRMIDSVLESARDMGIKVLRIWGFLDGESYCRDKNTYMHPEPGVFG 87 (383)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEECCCBSHHHHHHHTEESBSBTTBCS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccCCCccc
Confidence 378889999999999999998774 36888765443
No 18
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=32.33 E-value=65 Score=26.27 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=30.3
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|..||.
T Consensus 72 pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~ 112 (291)
T 3a5f_A 72 PVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQ 112 (291)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH
T ss_pred cEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCH
Confidence 48999998 77999999999999999955443 3556654
No 19
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=31.97 E-value=58 Score=26.83 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=30.3
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|..||.
T Consensus 82 pViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~ 122 (303)
T 2wkj_A 82 KLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSF 122 (303)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCH
T ss_pred cEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCH
Confidence 48999998 77999999999999999954443 3556664
No 20
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=31.88 E-value=59 Score=26.80 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=30.3
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|.+||.
T Consensus 83 pViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~ 123 (306)
T 1o5k_A 83 PVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQ 123 (306)
T ss_dssp CEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCH
T ss_pred eEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCH
Confidence 48999998 77999999999999999955443 3556654
No 21
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=31.60 E-value=67 Score=26.36 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=31.4
Q ss_pred cceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 4 SSIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 4 s~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
--+|+|.|. +-+|.++..+...++|+|-+-+- -|..||.
T Consensus 78 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~ 119 (301)
T 3m5v_A 78 VKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQ 119 (301)
T ss_dssp CEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCH
Confidence 458999995 89999999999999999955444 3667764
No 22
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=31.30 E-value=39 Score=24.76 Aligned_cols=26 Identities=19% Similarity=0.047 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
|+| .|+.+.++.+++.|+.++.|...
T Consensus 90 G~t-~~~~~~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 90 GET-KSLIHTAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp SCC-HHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCc-HHHHHHHHHHHHCCCEEEEEECC
Confidence 777 78999999999999999999875
No 23
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=31.29 E-value=67 Score=26.67 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=31.6
Q ss_pred cceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 4 SSIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 4 s~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
--+|+|.|. +-+|.++..+...++|+|-+-+. -|.+||.
T Consensus 93 vpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~ 134 (314)
T 3qze_A 93 IPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQ 134 (314)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH
T ss_pred CcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCH
Confidence 348999996 78999999999999999965554 3667764
No 24
>4h6q_A Proline dehydrogenase; BETA8-alpha8-barrel, flavoenzyme, oxidoreductase; HET: FAD; 1.36A {Deinococcus radiodurans} PDB: 4h6r_A*
Probab=31.28 E-value=32 Score=29.10 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCC
Q psy6794 10 LGETDAEVQQTLDDLLAAGVD 30 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d 30 (165)
.|||.+|+++++++|.+.|+.
T Consensus 38 aGet~~ea~~~~~~l~~~G~~ 58 (312)
T 4h6q_A 38 AGESIESAIQAVQALERDGIA 58 (312)
T ss_dssp CCSSHHHHHHHHHHHHHTTCE
T ss_pred CcCCHHHHHHHHHHHHhCCCE
Confidence 599999999999999999986
No 25
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=30.81 E-value=35 Score=29.98 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=25.9
Q ss_pred CHHHHHHHHHH--------HHHcCCCeeee--------eeccCCCCCC
Q psy6794 13 TDAEVQQTLDD--------LLAAGVDCVTL--------GQYMQPTKKH 44 (165)
Q Consensus 13 ~~~ev~~~~~d--------l~~~~~d~~ti--------gqyl~ps~~h 44 (165)
|.+||.+++++ +.++|.|.|-| .|+|.|..++
T Consensus 158 t~~eI~~ii~~~~~~aa~~a~~aGfdgveih~~~GYLl~QFLsp~~N~ 205 (407)
T 3tjl_A 158 TTQEVKDLVYEAYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQ 205 (407)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEECCccchHHHHhcCccccc
Confidence 68999999998 67899998776 3899996554
No 26
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=30.75 E-value=63 Score=26.86 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=31.0
Q ss_pred cceeeecC-CCHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 4 SSIMLGLG-ETDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 4 s~~m~glg-e~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
--+|+|.| .+-+|.++..+...++|+|-+-+. -|..||.
T Consensus 94 vpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~ 135 (315)
T 3na8_A 94 VPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNE 135 (315)
T ss_dssp SCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCH
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCH
Confidence 34899999 688999999999999999965554 3666664
No 27
>3dtz_A Putative chlorite dismutase TA0507; putatvie chlorite dismutase TA0507 thermoplasma acidophilum, structural genomics, PSI-2; HET: MSE; 1.81A {Thermoplasma acidophilum}
Probab=30.68 E-value=7 Score=32.53 Aligned_cols=43 Identities=2% Similarity=-0.056 Sum_probs=36.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCC
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQP 57 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~ 57 (165)
=++++.+++.+...+|+. +||+||.|+..-+.|.++..|+.+.
T Consensus 83 ~~~~~~~~Lq~~~~~l~~------~lg~~l~p~~S~~sv~~~s~Y~~~~ 125 (244)
T 3dtz_A 83 YSSRNPDLMILAKERVQA------SMRPIAVSSFSSISIYDESPYNAMN 125 (244)
T ss_dssp EEESCHHHHHHHHHHHHH------HHTTTEEEEEEEEEEECCHHHHHTT
T ss_pred EeCCCHHHHHHHHHHHHH------HHhhhcccceEEEEEeecccccCCC
Confidence 468999999999999973 6999999999888888777888754
No 28
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=30.17 E-value=24 Score=32.05 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=36.9
Q ss_pred ceeeecCCCHHHHHHHHHHHHHcCCC----------eeeeeeccCCCCCCCccc
Q psy6794 5 SIMLGLGETDAEVQQTLDDLLAAGVD----------CVTLGQYMQPTKKHLKVS 48 (165)
Q Consensus 5 ~~m~glge~~~ev~~~~~dl~~~~~d----------~~tigqyl~ps~~h~~v~ 48 (165)
.+++|+||.-.|+.+.++++.+.|+- ++..+|.=+|...|+-+.
T Consensus 197 ~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~ 250 (498)
T 1fx0_B 197 SVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVG 250 (498)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHH
T ss_pred EEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHHH
Confidence 57899999999999999999998853 677888888877776664
No 29
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=30.09 E-value=73 Score=25.95 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=30.2
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|..||.
T Consensus 71 pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~ 111 (292)
T 2vc6_A 71 PVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQ 111 (292)
T ss_dssp CBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH
T ss_pred cEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCH
Confidence 48999998 77999999999999999954443 3666664
No 30
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=29.89 E-value=68 Score=26.16 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=30.3
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|..||.
T Consensus 75 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~ 115 (293)
T 1f6k_A 75 ALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSF 115 (293)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCH
T ss_pred eEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCH
Confidence 48999998 77999999999999999955443 3556664
No 31
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=29.89 E-value=67 Score=26.15 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=30.2
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|.+||.
T Consensus 71 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~ 111 (289)
T 2yxg_A 71 QVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQ 111 (289)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCH
Confidence 48999997 77999999999999999955443 3556664
No 32
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=29.79 E-value=50 Score=27.64 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=30.8
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeee-eeccCCCCCCCc
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTL-GQYMQPTKKHLK 46 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~ti-gqyl~ps~~h~~ 46 (165)
|.|.+.+++.++.+.|.++|++.+.| +|-..|---|++
T Consensus 88 Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~ 126 (295)
T 1xg4_A 88 GFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRP 126 (295)
T ss_dssp CSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSS
T ss_pred ccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCC
Confidence 57889999999999999999999998 555444445765
No 33
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=29.54 E-value=68 Score=26.13 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=31.2
Q ss_pred cceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 4 SSIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 4 s~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
--+|+|.|. +-+|.++..+...++|+|-+-+. -|..||.
T Consensus 71 ~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~ 112 (291)
T 3tak_A 71 IPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQ 112 (291)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCH
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCH
Confidence 348999996 89999999999999999965544 4666764
No 34
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=29.13 E-value=78 Score=25.89 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=30.8
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+. -|..||.
T Consensus 78 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~ 118 (297)
T 3flu_A 78 PVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQ 118 (297)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH
T ss_pred cEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCH
Confidence 48999995 89999999999999999965544 4666764
No 35
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=28.87 E-value=49 Score=24.08 Aligned_cols=26 Identities=12% Similarity=0.058 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
|+| .|+.+.++-+++.|+.++.|...
T Consensus 93 G~t-~~~~~~~~~ak~~g~~vi~IT~~ 118 (180)
T 1jeo_A 93 GRT-ESVLTVAKKAKNINNNIIAIVCE 118 (180)
T ss_dssp SCC-HHHHHHHHHHHTTCSCEEEEESS
T ss_pred CCc-HHHHHHHHHHHHCCCcEEEEeCC
Confidence 666 67999999999999999999875
No 36
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=28.83 E-value=59 Score=23.04 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=27.4
Q ss_pred eeeecCCCHHHHHHHHHHHHHcCCCeeeee-eccCC
Q psy6794 6 IMLGLGETDAEVQQTLDDLLAAGVDCVTLG-QYMQP 40 (165)
Q Consensus 6 ~m~glge~~~ev~~~~~dl~~~~~d~~tig-qyl~p 40 (165)
.+|+.|-+...+.++.+.|++.|+++-.|- .++.|
T Consensus 17 ~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P 52 (118)
T 3ju3_A 17 TFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSP 52 (118)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCS
T ss_pred EEEEECccHHHHHHHHHHHHHCCCceEEEEECeEec
Confidence 589999999999999999999988753332 24444
No 37
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=28.81 E-value=65 Score=26.43 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=30.0
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|..||.
T Consensus 71 pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~ 111 (297)
T 2rfg_A 71 PVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQ 111 (297)
T ss_dssp CBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCH
T ss_pred eEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCH
Confidence 48999998 77999999999999999955443 3556654
No 38
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=28.48 E-value=19 Score=26.04 Aligned_cols=28 Identities=14% Similarity=0.030 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcC--CCeeeeeeccCCC
Q psy6794 14 DAEVQQTLDDLLAAG--VDCVTLGQYMQPT 41 (165)
Q Consensus 14 ~~ev~~~~~dl~~~~--~d~~tigqyl~ps 41 (165)
...|.++|.+|.+.| +|++|+.++|+-.
T Consensus 45 H~~If~ai~~L~~~~~piD~vtl~~~L~~~ 74 (123)
T 3gxv_A 45 NGLFFEIALKLHEEDCPIDENFIRQKMPKD 74 (123)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 357889999999887 6889999999764
No 39
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=28.30 E-value=58 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLGQYM 38 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tigqyl 38 (165)
|+| .|+.+.++.+++.|+.++.|...-
T Consensus 98 G~t-~~~~~~~~~ak~~g~~vi~IT~~~ 124 (187)
T 3sho_A 98 RYL-RDTVAALAGAAERGVPTMALTDSS 124 (187)
T ss_dssp SCC-HHHHHHHHHHHHTTCCEEEEESCT
T ss_pred CCC-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence 566 579999999999999999998753
No 40
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=27.78 E-value=6 Score=27.45 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.2
Q ss_pred ccccccccCCCCccccccC
Q psy6794 109 LHTVCEEARCPNIGECWGG 127 (165)
Q Consensus 109 L~TVCeeA~CPNi~EC~~~ 127 (165)
+.+|||+|+==|+.||--.
T Consensus 40 Ieav~qSakyWNlaEC~~~ 58 (75)
T 2fqm_A 40 IKAVVQSAKHWNLAECTFE 58 (75)
T ss_dssp HHHHHHHHHHSCGGGSEEE
T ss_pred HHHHHhhhcccchhheEEE
Confidence 4579999999999999653
No 41
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=27.65 E-value=29 Score=31.41 Aligned_cols=44 Identities=25% Similarity=0.484 Sum_probs=35.8
Q ss_pred ceeeecCCCHHHHHHHHHHHHHcCCC---------eeeeeeccCCCCCCCccc
Q psy6794 5 SIMLGLGETDAEVQQTLDDLLAAGVD---------CVTLGQYMQPTKKHLKVS 48 (165)
Q Consensus 5 ~~m~glge~~~ev~~~~~dl~~~~~d---------~~tigqyl~ps~~h~~v~ 48 (165)
.+++|+||..+||.+.++++.+.|+- ++..+|.=+|...|+-+.
T Consensus 185 ~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~ 237 (482)
T 2ck3_D 185 SVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVA 237 (482)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHH
Confidence 47899999999999999999998752 677788888876666554
No 42
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=27.56 E-value=61 Score=22.59 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=28.4
Q ss_pred eeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCC
Q psy6794 6 IMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQP 40 (165)
Q Consensus 6 ~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~p 40 (165)
+.|.|-..++++.++++.|++.||.+=.||--|.-
T Consensus 67 L~v~l~G~~~~~~~ai~~L~~~~v~vEvl~~~~~~ 101 (106)
T 3dhx_A 67 MLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYVLEH 101 (106)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEEEEEC-
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeeeeeec
Confidence 45677667889999999999999999888876653
No 43
>1t0t_V APC35880; pentamer, icosahedral, structural genomics, protein structure initiative, MCSG, PSI; HET: P33; 1.75A {Geobacillus stearothermophilus} SCOP: d.58.4.10
Probab=27.25 E-value=22 Score=29.45 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=37.2
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccC
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQ 56 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~ 56 (165)
=++++.+++.++..+|+.. .||+||.|+..-+.|.++..|+..
T Consensus 74 ~~~~~~~~lq~~~~~~~rt-----~lg~~l~p~~S~vsv~~~s~y~~~ 116 (248)
T 1t0t_V 74 ILRPTLDELHEIETALNKT-----KLADYLLPAYSYVSVVELSNYLAS 116 (248)
T ss_dssp EEESSHHHHHHHHHHHHHS-----TGGGGEEEEEEEEEEEEECCCCCC
T ss_pred EeCCCHHHHHHHHHHHHhc-----ccccccccceeeEEEeeeecccCC
Confidence 4789999999999999983 599999999998888877789864
No 44
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=27.15 E-value=86 Score=26.06 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=31.2
Q ss_pred cceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 4 SSIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 4 s~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
--+|+|.|. +-+|.++..+...++|+|-+-+. -|.+||.
T Consensus 92 vpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~ 133 (315)
T 3si9_A 92 VPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQ 133 (315)
T ss_dssp SCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCH
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCH
Confidence 358999995 89999999999999999965544 3666764
No 45
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=27.02 E-value=35 Score=27.02 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=24.1
Q ss_pred eeeecCCCH--HHHHHHHHHHHHcCCCeeeee
Q psy6794 6 IMLGLGETD--AEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 6 ~m~glge~~--~ev~~~~~dl~~~~~d~~tig 35 (165)
|+|-=|+.. +++.+..+.|++.|+.|.+||
T Consensus 133 illTDG~~~d~~~~~~~~~~l~~~gv~i~~ig 164 (281)
T 4hqf_A 133 VILTDGIPDSIQDSLKESRKLSDRGVKIAVFG 164 (281)
T ss_dssp EEEESSCCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEecCCCCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 444446654 489999999999999999988
No 46
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=26.94 E-value=85 Score=25.47 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=29.3
Q ss_pred eeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccC-CCC
Q psy6794 6 IMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQ-PTK 42 (165)
Q Consensus 6 ~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~-ps~ 42 (165)
+|+|.|. +-+|.++..+...++|+|-+-+- -|.+ ||.
T Consensus 67 vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~ 107 (286)
T 2r91_A 67 VIVQVASLNADEAIALAKYAESRGAEAVASLPPYYFPRLSE 107 (286)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCH
T ss_pred EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCH
Confidence 8999998 77999999999999999954443 3555 553
No 47
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=26.58 E-value=81 Score=25.97 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=30.9
Q ss_pred ceeeecC-CCHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLG-ETDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glg-e~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.| .+-+|.++..+...++|+|-+-+. -|..||.
T Consensus 86 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~ 126 (304)
T 3l21_A 86 RVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQ 126 (304)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCH
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCH
Confidence 5899998 688999999999999999965554 4666654
No 48
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=26.29 E-value=23 Score=26.52 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=22.7
Q ss_pred eeeecCCCH----HHHHHHHHHHHHcCCCeeeeee
Q psy6794 6 IMLGLGETD----AEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 6 ~m~glge~~----~ev~~~~~dl~~~~~d~~tigq 36 (165)
|+|-=|+.. +++.+..+.|++.|+.+.+||=
T Consensus 120 illTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igv 154 (202)
T 1ijb_A 120 LLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGI 154 (202)
T ss_dssp EEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEccCCCCccchHHHHHHHHHHHHCCCEEEEEec
Confidence 334446553 3688888999999999988883
No 49
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=25.87 E-value=72 Score=26.74 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=29.9
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|.+||.
T Consensus 105 pViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~ 145 (332)
T 2r8w_A 105 TLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQ 145 (332)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCH
T ss_pred cEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCH
Confidence 48999997 77999999999999999955443 3556654
No 50
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=25.74 E-value=84 Score=26.50 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=30.0
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|..||.
T Consensus 102 pViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~ 142 (343)
T 2v9d_A 102 PVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSE 142 (343)
T ss_dssp CEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCH
T ss_pred cEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCH
Confidence 48999995 77999999999999999955443 3556654
No 51
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=25.65 E-value=32 Score=29.23 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHH-------HHcCCCeeee--------eeccCCCCCC
Q psy6794 13 TDAEVQQTLDDL-------LAAGVDCVTL--------GQYMQPTKKH 44 (165)
Q Consensus 13 ~~~ev~~~~~dl-------~~~~~d~~ti--------gqyl~ps~~h 44 (165)
|.+||.++.+|. .++|.|.|=| .|+|.|..++
T Consensus 152 t~~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~ 198 (364)
T 1vyr_A 152 ELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQ 198 (364)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccc
No 52
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=25.26 E-value=90 Score=25.44 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=31.0
Q ss_pred cceeeecC-CCHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 4 SSIMLGLG-ETDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 4 s~~m~glg-e~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
--+|+|.| .+-+|.++..+...++|+|-+-+. -|..||.
T Consensus 72 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~ 113 (292)
T 3daq_A 72 VPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQ 113 (292)
T ss_dssp SCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCH
T ss_pred CcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCH
Confidence 35899998 488999999999999999955444 4667764
No 53
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=25.16 E-value=88 Score=25.46 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=29.4
Q ss_pred eeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccC-CCC
Q psy6794 6 IMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQ-PTK 42 (165)
Q Consensus 6 ~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~-ps~ 42 (165)
+|+|.|. +-+|.++..+...++|+|-+-+- -|.+ ||.
T Consensus 68 ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~ 108 (288)
T 2nuw_A 68 LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSPYYFPRLPE 108 (288)
T ss_dssp EEEECCCSCHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCH
T ss_pred eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCH
Confidence 8999997 77999999999999999954443 3555 554
No 54
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=24.89 E-value=58 Score=23.90 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
|+| .|+.++++-+++.|+.++.|...
T Consensus 127 G~t-~~~~~~~~~ak~~g~~vI~IT~~ 152 (198)
T 2xbl_A 127 GKS-PNILAAFREAKAKGMTCVGFTGN 152 (198)
T ss_dssp SCC-HHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCC-HHHHHHHHHHHHCCCeEEEEECC
Confidence 677 67899999999999999999864
No 55
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=24.86 E-value=70 Score=26.28 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=30.5
Q ss_pred ceeeecC-CCHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLG-ETDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glg-e~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.| .+-+|.++..+...++|+|-+-+. -|..||.
T Consensus 75 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~ 115 (300)
T 3eb2_A 75 PVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKD 115 (300)
T ss_dssp CBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCH
Confidence 4899999 488999999999999999965544 3666664
No 56
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=24.77 E-value=51 Score=25.27 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 12 ETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 12 e~~~ev~~~~~dl~~~~~d~~tig 35 (165)
...+++.++.+.+++.|+.+.|||
T Consensus 119 ~~~~~~~~~a~~lk~~gi~v~~Ig 142 (192)
T 2x5n_A 119 EDEKNLIRLAKRMKKNNVAIDIIH 142 (192)
T ss_dssp SCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCchhHHHHHHHHHHCCCEEEEEE
Confidence 457899999999999999998877
No 57
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=24.41 E-value=65 Score=26.28 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=30.0
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCCCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQPTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|..||.
T Consensus 72 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~ 112 (292)
T 2ojp_A 72 PVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQ 112 (292)
T ss_dssp CEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCH
T ss_pred cEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCH
Confidence 48999998 77999999999999999954443 3556654
No 58
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=23.96 E-value=54 Score=24.38 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=24.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
||-...|+.+.++.|.+.||.++++.+=
T Consensus 69 l~R~~~~~~~~~~~l~~~gv~l~~~~~~ 96 (183)
T 1gdt_A 69 LGRDTADMIQLIKEFDAQGVSIRFIDDG 96 (183)
T ss_dssp TCSSHHHHHHHHHHHHHTTCEEEEGGGC
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 6778889999999999999999999753
No 59
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.90 E-value=86 Score=25.90 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=28.9
Q ss_pred cceeeecC-CCHHHHHHHHHHHHHcCCCeeee-eeccCCC
Q psy6794 4 SSIMLGLG-ETDAEVQQTLDDLLAAGVDCVTL-GQYMQPT 41 (165)
Q Consensus 4 s~~m~glg-e~~~ev~~~~~dl~~~~~d~~ti-gqyl~ps 41 (165)
--+|+|.| .+-+|.++..+...++|+|-+-+ --|-.||
T Consensus 77 vpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~~~~s 116 (313)
T 3dz1_A 77 MQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPPSLRT 116 (313)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTCCS
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCC
Confidence 34899999 48999999999999999995544 3343343
No 60
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=23.89 E-value=75 Score=25.79 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=29.9
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccCC-CC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQP-TK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~p-s~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+. -|..| |.
T Consensus 64 pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~~ 105 (283)
T 2pcq_A 64 PFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRYYHGSLG 105 (283)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCTTGGGTT
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCEEEecCCcCCCCCCH
Confidence 47899996 77999999999999999955443 35566 54
No 61
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=23.80 E-value=97 Score=25.55 Aligned_cols=39 Identities=8% Similarity=0.114 Sum_probs=30.3
Q ss_pred cceeeecCC-CHHHHHHHHHHHHHcCCCeee-eeec----cCCCC
Q psy6794 4 SSIMLGLGE-TDAEVQQTLDDLLAAGVDCVT-LGQY----MQPTK 42 (165)
Q Consensus 4 s~~m~glge-~~~ev~~~~~dl~~~~~d~~t-igqy----l~ps~ 42 (165)
--+|+|.|. +-+|.++..+...++|+|-+- +--| .+||.
T Consensus 78 vpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~ 122 (309)
T 3fkr_A 78 VPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPE 122 (309)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCH
T ss_pred CcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCH
Confidence 348999995 799999999999999999544 3344 46764
No 62
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=23.78 E-value=97 Score=25.29 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=29.9
Q ss_pred ceeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccC-CCC
Q psy6794 5 SIMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQ-PTK 42 (165)
Q Consensus 5 ~~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~-ps~ 42 (165)
-+|+|.|. +-+|.++..+...++|+|-+-+- -|.. ||.
T Consensus 74 pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~ 115 (294)
T 3b4u_A 74 RIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSD 115 (294)
T ss_dssp GEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCH
T ss_pred cEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCH
Confidence 48999998 77999999999999999955443 3556 553
No 63
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=23.48 E-value=64 Score=20.20 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHcCCC
Q psy6794 13 TDAEVQQTLDDLLAAGVD 30 (165)
Q Consensus 13 ~~~ev~~~~~dl~~~~~d 30 (165)
.-+.|.++|+.|+.+|+.
T Consensus 57 ~y~~vv~vmd~l~~aG~~ 74 (74)
T 2jwk_A 57 PYEEVIKALNLLHLAGIK 74 (74)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 356788888888888863
No 64
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=23.44 E-value=53 Score=23.89 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=24.2
Q ss_pred eeeecCCCHHH--HHHHHHHHHHcCCCeeeeee
Q psy6794 6 IMLGLGETDAE--VQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 6 ~m~glge~~~e--v~~~~~dl~~~~~d~~tigq 36 (165)
|++-=|+..+. +.+..+.|++.|+.+.+||=
T Consensus 127 illTDG~~~~~~~~~~~~~~l~~~gi~v~~igv 159 (178)
T 2xgg_A 127 IGMTDGESDSDFRTVRAAKEIRELGGIVTVLAV 159 (178)
T ss_dssp EEEESSCCCHHHHHSHHHHHHHHTTCEEEEEEC
T ss_pred EEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEc
Confidence 45555666555 88999999999999999983
No 65
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=23.33 E-value=72 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLGQY 37 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tigqy 37 (165)
|+| .|+.++++-+++.|+.++.|...
T Consensus 121 G~t-~~~~~~~~~ak~~g~~vi~iT~~ 146 (188)
T 1tk9_A 121 GKS-PNVLEALKKAKELNMLCLGLSGK 146 (188)
T ss_dssp SCC-HHHHHHHHHHHHTTCEEEEEEEG
T ss_pred CCC-HHHHHHHHHHHHCCCEEEEEeCC
Confidence 667 67999999999999999999875
No 66
>2gm5_A Transposon gamma-delta resolvase; site specific recombination, recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A 1ght_A 1hx7_A
Probab=23.21 E-value=52 Score=23.73 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
||-...|+.+.++.|.+.||.++++.+
T Consensus 68 L~R~~~d~~~~~~~l~~~gv~l~~~~~ 94 (139)
T 2gm5_A 68 LGRDTADMIQLIKEFDAQGVSIRFIDD 94 (139)
T ss_dssp TSSSHHHHHHHHHHHHHTTCEEEETTT
T ss_pred ccCCHHHHHHHHHHHHhCCCEEEEecC
Confidence 677888999999999999999998875
No 67
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA, recombination; 1.80A {Staphylococcus aureus}
Probab=22.62 E-value=53 Score=23.12 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=22.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
||-...|+.+.++.|.+.||.++++-+
T Consensus 67 l~R~~~~~~~~~~~l~~~gv~l~~~~~ 93 (124)
T 3pkz_A 67 LGRNYNEVIHTVNYLKDKEVQLMITSL 93 (124)
T ss_dssp HCSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 567788999999999999999988754
No 68
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=22.53 E-value=51 Score=27.96 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHH-------HHcCCCeeee--------eeccCCCCCC
Q psy6794 13 TDAEVQQTLDDL-------LAAGVDCVTL--------GQYMQPTKKH 44 (165)
Q Consensus 13 ~~~ev~~~~~dl-------~~~~~d~~ti--------gqyl~ps~~h 44 (165)
|.+||.++.+|. .++|.|.|=| .|+|.|..++
T Consensus 152 t~~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~ 198 (365)
T 2gou_A 152 TKADIAQVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANN 198 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccC
No 69
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=22.40 E-value=43 Score=30.86 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHcCCCeeeeee----ccCCCCCCCc
Q psy6794 13 TDAEVQQTLDDLLAAGVDCVTLGQ----YMQPTKKHLK 46 (165)
Q Consensus 13 ~~~ev~~~~~dl~~~~~d~~tigq----yl~ps~~h~~ 46 (165)
..+...+-|+.++++|++.+.++- .++|......
T Consensus 21 ~~~~~~~Dl~~mk~~G~n~vr~~if~W~~~eP~~g~~~ 58 (675)
T 3tty_A 21 DKATMEEDMRMFNLAGIDVATVNVFSWAKIQRDEVSYD 58 (675)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECSSCHHHHBSSSSCBC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeechhhhCCcCCccC
Confidence 456788889999999999999873 4678765443
No 70
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=22.37 E-value=67 Score=24.72 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHH--cCCCeeeeeec
Q psy6794 11 GETDAEVQQTLDDLLA--AGVDCVTLGQY 37 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~--~~~d~~tigqy 37 (165)
|+| .|+.++++.+++ .|+.++.|...
T Consensus 117 G~t-~~~i~~~~~ak~~~~Ga~vI~IT~~ 144 (220)
T 3etn_A 117 GKT-REIVELTQLAHNLNPGLKFIVITGN 144 (220)
T ss_dssp SCC-HHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCC-HHHHHHHHHHHhcCCCCeEEEEECC
Confidence 777 789999999999 99999999864
No 71
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=22.00 E-value=69 Score=27.07 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=25.2
Q ss_pred CHHHHHHHHHH-------HHHcCCCeeeee--------eccCCCCCCC
Q psy6794 13 TDAEVQQTLDD-------LLAAGVDCVTLG--------QYMQPTKKHL 45 (165)
Q Consensus 13 ~~~ev~~~~~d-------l~~~~~d~~tig--------qyl~ps~~h~ 45 (165)
|.+||.+++++ +.++|.|.|=|= |+|.|..++-
T Consensus 134 t~~eI~~ii~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R 181 (343)
T 3kru_A 134 SVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKR 181 (343)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCC
T ss_pred CHHHHHHHHHHHHHHHhhccccCCceEEEecccchhHHHhhccccccc
Confidence 67888887776 456899988774 8999987654
No 72
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=21.93 E-value=95 Score=26.35 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=29.5
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeeee-eeccCCCCCCCc
Q psy6794 9 GLGETDAEVQQTLDDLLAAGVDCVTL-GQYMQPTKKHLK 46 (165)
Q Consensus 9 glge~~~ev~~~~~dl~~~~~d~~ti-gqyl~ps~~h~~ 46 (165)
|.| +.+++.++.+.|.++|+.-+.| +|-.-|---|++
T Consensus 111 Gyg-~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~ 148 (318)
T 1zlp_A 111 GGG-GPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMR 148 (318)
T ss_dssp CSS-SHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSS
T ss_pred CCC-CHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCC
Confidence 677 8899999999999999999998 554444445776
No 73
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=21.86 E-value=94 Score=25.35 Aligned_cols=37 Identities=8% Similarity=0.028 Sum_probs=29.5
Q ss_pred eeeecCC-CHHHHHHHHHHHHHcCCCeeeee--eccC-CCC
Q psy6794 6 IMLGLGE-TDAEVQQTLDDLLAAGVDCVTLG--QYMQ-PTK 42 (165)
Q Consensus 6 ~m~glge-~~~ev~~~~~dl~~~~~d~~tig--qyl~-ps~ 42 (165)
+|+|.|. +-+|.++..+...++|+|-+-+- -|.+ ||.
T Consensus 68 viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~ 108 (293)
T 1w3i_A 68 IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSE 108 (293)
T ss_dssp EEEECCCSCHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCH
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCH
Confidence 8999997 77999999999999999955443 3555 654
No 74
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=21.83 E-value=58 Score=23.83 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
||-...|+.+.++.|.+.||.++++-+
T Consensus 87 l~R~~~~~~~~~~~l~~~gv~l~~~~~ 113 (167)
T 3guv_A 87 FARNAADVLSTLQIMQDYGVNLICVED 113 (167)
T ss_dssp TCSSHHHHHHHHHHHHHTTCEEEETTT
T ss_pred hcCCHHHHHHHHHHHHHCCCEEEEeeC
Confidence 567788999999999999999998875
No 75
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri}
Probab=21.63 E-value=90 Score=25.08 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 12 ETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 12 e~~~ev~~~~~dl~~~~~d~~tig 35 (165)
-|.+||.+.|+++.++|||-+.|+
T Consensus 283 Gtp~~v~~~l~~~~~~G~d~~~l~ 306 (327)
T 1z69_A 283 GTPDDCMKRIKDLEAIGVTQIVAG 306 (327)
T ss_dssp ESHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEc
Confidence 478999999999999999988884
No 76
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=21.59 E-value=55 Score=25.78 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=23.9
Q ss_pred eeeecCCCH--HHHHHHHHHHHHcCCCeeeee
Q psy6794 6 IMLGLGETD--AEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 6 ~m~glge~~--~ev~~~~~dl~~~~~d~~tig 35 (165)
|+|-=|+.. +++.+..+.|++.|+.+.+||
T Consensus 130 IllTDG~~~d~~~~~~~a~~l~~~gi~i~~iG 161 (266)
T 4hqo_A 130 ILMTDGVPNSKYRALEVANKLKQRNVRLAVIG 161 (266)
T ss_dssp EEEECSCCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEccCCCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 444445543 589999999999999999988
No 77
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=21.45 E-value=58 Score=30.81 Aligned_cols=38 Identities=8% Similarity=0.194 Sum_probs=31.8
Q ss_pred CccceeeecC-CCHHHHHHHHHHHHHcCCCeeeeeeccC
Q psy6794 2 RESSIMLGLG-ETDAEVQQTLDDLLAAGVDCVTLGQYMQ 39 (165)
Q Consensus 2 ~ks~~m~glg-e~~~ev~~~~~dl~~~~~d~~tigqyl~ 39 (165)
+|=+|+++=| -.+.|+....+.|+++|+.+.+||.-..
T Consensus 538 rKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g 576 (688)
T 3ej6_A 538 LRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA 576 (688)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 5678889888 5667999999999999999999986443
No 78
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=21.43 E-value=54 Score=26.62 Aligned_cols=29 Identities=14% Similarity=0.389 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeee-eccC
Q psy6794 11 GETDAEVQQTLDDLLAAGVDCVTLG-QYMQ 39 (165)
Q Consensus 11 ge~~~ev~~~~~dl~~~~~d~~tig-qyl~ 39 (165)
|.|.+|+++.++.+.+.|+|++=+= .||.
T Consensus 28 ~~t~~e~l~~a~~~~~~~aD~vElR~D~l~ 57 (258)
T 4h3d_A 28 GKNKKDIIKEAKELKDACLDIIEWRVDFFE 57 (258)
T ss_dssp CSSHHHHHHHHHHHTTSSCSEEEEEGGGCT
T ss_pred CCCHHHHHHHHHHHhhcCCCEEEEeecccc
Confidence 7899999999999999999997664 3554
No 79
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=21.17 E-value=39 Score=28.89 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHH-------HHcCCCeeee--------eeccCCCCCC
Q psy6794 13 TDAEVQQTLDDL-------LAAGVDCVTL--------GQYMQPTKKH 44 (165)
Q Consensus 13 ~~~ev~~~~~dl-------~~~~~d~~ti--------gqyl~ps~~h 44 (165)
|.+||.++.+|. .++|.|.|-| .|+|.|..++
T Consensus 157 t~~eI~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~ 203 (377)
T 2r14_A 157 ETDEIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNR 203 (377)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCcccc
No 80
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=21.14 E-value=83 Score=20.83 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHcCCCeeeee
Q psy6794 13 TDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 13 ~~~ev~~~~~dl~~~~~d~~tig 35 (165)
..+.|.++|+.|+++|+.=+.|-
T Consensus 69 ~y~~vv~vmd~l~~aG~~~v~l~ 91 (99)
T 2pfu_A 69 DYETLMKVMDTLHQAGYLKIGLV 91 (99)
T ss_dssp CHHHHHHHHHHHHHTCCCCEECT
T ss_pred CHHHHHHHHHHHHHcCCCeEEEE
Confidence 46789999999999999766553
No 81
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=21.05 E-value=82 Score=23.48 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=24.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCC
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKK 43 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~ 43 (165)
++-..++|.++++++.+.++|++-..==+-|+.+
T Consensus 51 v~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~~~ 84 (167)
T 2g2c_A 51 VPEGYDTVVEAIATALKQGARFIITAGGTGIRAK 84 (167)
T ss_dssp ECSSHHHHHHHHHHHHHTTCSEEEEESCCSSSTT
T ss_pred eCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 4567889999999998877996444334555554
No 82
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens}
Probab=20.62 E-value=91 Score=22.80 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=31.5
Q ss_pred cceeeecCCCHHHHHHHHHHHHHcC--CCeeeeeeccCCCCCCCccc
Q psy6794 4 SSIMLGLGETDAEVQQTLDDLLAAG--VDCVTLGQYMQPTKKHLKVS 48 (165)
Q Consensus 4 s~~m~glge~~~ev~~~~~dl~~~~--~d~~tigqyl~ps~~h~~v~ 48 (165)
||+.|-|+--.+|+.+++++++.-. .+.+.++ | ....+.+.|.
T Consensus 6 ~~m~~~l~~~~~e~~~a~~~v~~~~~~~~wi~~~-i-~~~~~~l~v~ 50 (146)
T 1x67_A 6 SGMAANLSRNGPALQEAYVRVVTEKSPTDWALFT-Y-EGNSNDIRVA 50 (146)
T ss_dssp SSSCCCCCTTHHHHHHHHHHHHCSSSSCSEEEEE-E-SSSSSCEEEE
T ss_pred cceEEEcCCCCHHHHHHHHHHHcCCCCccEEEEE-E-eCCCcEEEEE
Confidence 7888999999999999999999876 6666664 2 2323345553
No 83
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=20.52 E-value=65 Score=24.17 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=24.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
||-...|+.+.++.|.+.||.++++.+
T Consensus 66 L~R~~~~~~~~~~~l~~~gv~l~~~~~ 92 (193)
T 3uj3_X 66 LGRSMKHLISLVGELRERGINFRSLTD 92 (193)
T ss_dssp TTCCHHHHHHHHHHHHTTTCCCEETTT
T ss_pred ccCChHHHHHHHHHHHHcCcEEEEcCC
Confidence 677889999999999999999999875
No 84
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=20.32 E-value=49 Score=24.23 Aligned_cols=27 Identities=4% Similarity=0.022 Sum_probs=22.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794 10 LGETDAEVQQTLDDLLAAGVDCVTLGQ 36 (165)
Q Consensus 10 lge~~~ev~~~~~dl~~~~~d~~tigq 36 (165)
||-...|+.+.++.|.+.||.++++.+
T Consensus 87 l~R~~~~~~~~~~~l~~~gv~l~~~~~ 113 (169)
T 3g13_A 87 FARNTLDTLKYVRMLKERNIAVYFEDE 113 (169)
T ss_dssp HCSSHHHHHHHHHHHHTTTCEEEETTT
T ss_pred cccChHHHHHHHHHHHHcCCEEEEecC
Confidence 566778889999999999999988765
No 85
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=20.06 E-value=78 Score=25.29 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeee
Q psy6794 12 ETDAEVQQTLDDLLAAGVDCVTLG 35 (165)
Q Consensus 12 e~~~ev~~~~~dl~~~~~d~~tig 35 (165)
.+.+|+.+.+++|++.|++++.=|
T Consensus 138 ~~~ee~~~~i~~l~~~G~~vVVG~ 161 (225)
T 2pju_A 138 ITEEDARGQINELKANGTEAVVGA 161 (225)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCHHHHHHHHHHHHHCCCCEEECC
Confidence 478999999999999999986433
Done!