RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6794
(165 letters)
>gnl|CDD|215236 PLN02428, PLN02428, lipoic acid synthase.
Length = 349
Score = 111 bits (279), Expect = 5e-30
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 81 LRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIM 138
L P WL+ + P G ++ ++KE+LR L L+TVCEEA+CPNIGECW GG GT+TATIM
Sbjct: 49 LPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIM 106
Score = 84.8 bits (210), Expect = 4e-20
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 5/64 (7%)
Query: 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHY 63
+SIMLGLGETD EV QT++DL AAGVD VT GQY++PTK+HL V T PE + +
Sbjct: 251 TSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVT----PEKFEFW 306
Query: 64 LKEY 67
+EY
Sbjct: 307 -REY 309
Score = 59.4 bits (144), Expect = 5e-11
Identities = 21/27 (77%), Positives = 22/27 (81%)
Query: 139 SGLDVFAHNIETVEKLTPYVRDRRARY 165
SGLDVFAHNIETVE+L VRD RA Y
Sbjct: 204 SGLDVFAHNIETVERLQRIVRDPRAGY 230
>gnl|CDD|235493 PRK05481, PRK05481, lipoyl synthase; Provisional.
Length = 289
Score = 99.8 bits (250), Expect = 5e-26
Identities = 33/61 (54%), Positives = 41/61 (67%), Gaps = 5/61 (8%)
Query: 78 NERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATI 137
+ R P WL+ K+PTG ++ ++K+ LR L LHTVCEEA CPNIGECW G TAT
Sbjct: 2 EKVARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TATF 56
Query: 138 M 138
M
Sbjct: 57 M 57
Score = 92.1 bits (230), Expect = 4e-23
Identities = 28/44 (63%), Positives = 37/44 (84%)
Query: 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKV 47
S +M+GLGETD EV + +DDL AAGVD +T+GQY+QP++KHL V
Sbjct: 200 SGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPV 243
Score = 45.8 bits (110), Expect = 2e-06
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 135 ATIM-SGLDVFAHNIETVEKLTPYVRDRRARY 165
T++ + DVF HN+ETV +L VR A Y
Sbjct: 149 LTVLDARPDVFNHNLETVPRLYKRVR-PGADY 179
>gnl|CDD|240408 PTZ00413, PTZ00413, lipoate synthase; Provisional.
Length = 398
Score = 98.7 bits (246), Expect = 4e-25
Identities = 45/93 (48%), Positives = 56/93 (60%), Gaps = 11/93 (11%)
Query: 51 ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTG----SQFAKVKEQLRT 106
E FV PE + G +KR + LPPW K K+P G +F +++ +R
Sbjct: 67 EGFVDLPEGLKPSAASI-GPIKRGEE-----PLPPWFKVKVPKGASRRPRFNRIRRSMRE 120
Query: 107 LNLHTVCEEARCPNIGECWGGG-EHGTSTATIM 138
LHTVCEEA+CPNIGECWGGG E GT+TATIM
Sbjct: 121 KKLHTVCEEAKCPNIGECWGGGDEEGTATATIM 153
Score = 76.4 bits (188), Expect = 5e-17
Identities = 34/46 (73%), Positives = 38/46 (82%)
Query: 3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVS 48
+SSIMLGLGET+ EV+QTL DL AGV VTLGQY+QPTK LKVS
Sbjct: 298 KSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVS 343
Score = 57.9 bits (140), Expect = 2e-10
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 139 SGLDVFAHNIETVEKLTPYVRDRRARY 165
S L V+AHNIE VE++TPYVRDRRA Y
Sbjct: 251 SPLSVYAHNIECVERITPYVRDRRASY 277
>gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism].
Length = 306
Score = 96.6 bits (241), Expect = 9e-25
Identities = 37/62 (59%), Positives = 41/62 (66%), Gaps = 5/62 (8%)
Query: 77 ENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTAT 136
E LR P WLK K PTGS++ ++KE LR LHTVCEEA CPNIGECW G TAT
Sbjct: 18 NEELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-----TAT 72
Query: 137 IM 138
M
Sbjct: 73 FM 74
Score = 86.9 bits (216), Expect = 4e-21
Identities = 27/44 (61%), Positives = 37/44 (84%)
Query: 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKV 47
S +M+GLGETD EV + +DDL +AGVD +T+GQY+QP++KHL V
Sbjct: 217 SGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLPV 260
Score = 49.6 bits (119), Expect = 1e-07
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 95 SQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETVEKL 154
FA+ +R LN T E P+ G +G DVF HN+ETV +L
Sbjct: 133 QHFAECIRAIRELNPQTTIE-VLTPDFR-----GNDDALEIVADAGPDVFNHNVETVPRL 186
Query: 155 TPYVRDRRARY 165
P VR A Y
Sbjct: 187 YPRVR-PGATY 196
>gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional.
Length = 290
Score = 87.3 bits (217), Expect = 3e-21
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 79 ERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIM 138
RLP WL+ I S+ V+ ++ LHT+CEEARCPN GEC+ G TAT +
Sbjct: 10 PVERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFL 64
Score = 76.9 bits (190), Expect = 2e-17
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKV 47
S +MLGLGET+ EV +TL DL A G D +T+GQY++P+ HL V
Sbjct: 208 SGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPV 251
Score = 41.8 bits (99), Expect = 5e-05
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 18/77 (23%)
Query: 95 SQFAKVKEQLRTLNLHTVCEEARCPNIG------ECWGGGEHGTSTATIMSGLDVFAHNI 148
+ F +R AR P G + WGG +T + + DVF HN+
Sbjct: 123 AHFVATIAAIR----------ARNPGTGIEVLTPDFWGGQRERLAT-VLAAKPDVFNHNL 171
Query: 149 ETVEKLTPYVRDRRARY 165
ETV +L VR R A Y
Sbjct: 172 ETVPRLQKAVR-RGADY 187
>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase. This enzyme is an iron-sulfur
protein. It is localized to mitochondria in yeast and
Arabidopsis. It generates lipoic acid, a thiol
antioxidant that is linked to a specific Lys as
prosthetic group for the pyruvate and
alpha-ketoglutarate dehydrogenase complexes and the
glycine-cleavage system. The family shows strong
sequence conservation [Biosynthesis of cofactors,
prosthetic groups, and carriers, Lipoate].
Length = 302
Score = 79.1 bits (195), Expect = 3e-18
Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 79 ERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIM 138
LR P WLK K+P G+ A++K ++ LHTVCEEA CPN+ ECW G TAT M
Sbjct: 13 ILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TATFM 67
Score = 70.3 bits (172), Expect = 5e-15
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 1 MRESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKV 47
+S IM+GLGET+ E++QTL DL GV VTLGQY++P+++HL V
Sbjct: 208 PTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPV 254
Score = 40.6 bits (95), Expect = 1e-04
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 139 SGLDVFAHNIETVEKLTPYVRDR 161
+ DV+ HN+ETVE+LTP+VR
Sbjct: 165 APPDVYNHNLETVERLTPFVRPG 187
>gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
This superfamily contains MoaA, NifB, PqqE,
coproporphyrinogen III oxidase, biotin synthase and MiaB
families, and includes a representative in the
eukaryotic elongator subunit, Elp-3. Some members of the
family are methyltransferases.
Length = 216
Score = 35.8 bits (83), Expect = 0.004
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38
+ +++GL GET+ + ++TL L G D V++
Sbjct: 155 TDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLS 190
>gnl|CDD|205457 pfam13277, YmdB, YmdB-like protein. This family of putative
phosphoesterases contains the B. subtilis protein YmdB.
Length = 253
Score = 30.5 bits (70), Expect = 0.35
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 6/27 (22%)
Query: 9 GLGETDAEVQQTLDDLLAAGVDCVTLG 35
G+ A+ +L AGVD +TLG
Sbjct: 43 GITPKIAK------ELFEAGVDVITLG 63
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase. This
is a family of related homocysteine S-methyltransferases
enzymes: 5-methyltetrahydrofolate--homocysteine
S-methyltransferases also known EC:2.1.1.13;
Betaine--homocysteine S-methyltransferase (vitamin B12
dependent), EC:2.1.1.5; and Homocysteine
S-methyltransferase, EC:2.1.1.10.
Length = 303
Score = 29.7 bits (67), Expect = 0.69
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHY 63
+ + L +A + ++ A GV+C M + L ++ R+ P + Y
Sbjct: 192 TGLTLSGATIEAALNSVQAEIDAVGVNCALGPDIMDEILELLSLTARKPLSVYPNSGEPY 251
Query: 64 L---KEYDG 69
KEYDG
Sbjct: 252 DAGKKEYDG 260
>gnl|CDD|163625 cd07382, MPP_DR1281, Deinococcus radiodurans DR1281 and related
proteins, metallophosphatase domain. DR1281 is an
uncharacterized Deinococcus radiodurans protein with a
domain that belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and
acid sphingomyelinases (ASMases). The conserved domain
is a double beta-sheet sandwich with a di-metal active
site made up of residues located at the C-terminal side
of the sheets. This domain is thought to allow for
productive metal coordination.
Length = 255
Score = 29.4 bits (67), Expect = 0.80
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 18 QQTLDDLLAAGVDCVTLG 35
+ +LL+AGVD +T+G
Sbjct: 48 PKIAKELLSAGVDVITMG 65
>gnl|CDD|227580 COG5255, COG5255, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 239
Score = 29.0 bits (65), Expect = 1.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 24 LLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEP 59
+LAAG+D ++ + +P HL + + F P P
Sbjct: 5 VLAAGLDAISSAAHDRPMPNHLGIKFDANGEFLPFP 40
>gnl|CDD|180172 PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated.
Length = 375
Score = 28.7 bits (65), Expect = 1.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 11 GETDAEVQQTLDDLLAAGVDCV 32
GE+D + + +LD L AGVD V
Sbjct: 171 GESDDDWRASLDAALEAGVDHV 192
>gnl|CDD|223708 COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S
oxidoreductases [Coenzyme metabolism].
Length = 416
Score = 28.0 bits (63), Expect = 2.2
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 6 IMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38
++ GL G+T +++ L+ L G D ++L
Sbjct: 194 LIYGLPGQTLESLKEDLEQALELGPDHLSLYSLA 227
>gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine
S-adenosyl-L-methionine-dependent methyltransferase
fusion protein; Provisional.
Length = 423
Score = 28.1 bits (62), Expect = 2.2
Identities = 17/28 (60%), Positives = 20/28 (71%), Gaps = 6/28 (21%)
Query: 19 QTLDDLLAAGVDCVTLGQYMQPTKKHLK 46
+TL DL AG+D VTLG+YM KHLK
Sbjct: 402 ETLPDL--AGLDRVTLGKYM----KHLK 423
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 28.0 bits (63), Expect = 2.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 88 KTKIPTGSQFAKVKEQLRTLNLH 110
+TKI T Q E ++ L L
Sbjct: 144 RTKIETEEQKEACLETVKKLKLD 166
>gnl|CDD|107297 cd06302, PBP1_LsrB_Quorum_Sensing, Periplasmic binding domain of
autoinducer-2 (AI-2) receptor LsrB from Salmonella
typhimurium and its close homologs. Periplasmic
binding domain of autoinducer-2 (AI-2) receptor LsrB
from Salmonella typhimurium and its close homologs from
other bacteria. The members of this group are
homologous to a family of periplasmic pentose/hexose
sugar-binding proteins that function as the primary
receptors for chemotaxis and transporters of many sugar
based solutes in bacteria and archaea and that are a
member of the type I periplasmic binding protein
superfamily. LsrB binds a chemically distinct form of
the AI-2 signal that lacks boron, in contrast to the
Vibrio harveyi AI-2 signaling molecule that has an
unusual furanosyl borate diester. Hence, many bacteria
coordinate their gene expression according to the local
density of their population by producing species
specific AI-2. This process of quorum sensing allows
LsrB to function as a periplasmic AI-2 binding protein
in interspecies signaling.
Length = 298
Score = 27.9 bits (63), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 6 IMLGLGETDAEVQ-QTLDDLLAAGVDCVTL 34
I +G DA Q Q ++DL+A GVD + +
Sbjct: 33 IYVGPTTADAAGQVQIIEDLIAQGVDAIAV 62
>gnl|CDD|236368 PRK09058, PRK09058, coproporphyrinogen III oxidase; Provisional.
Length = 449
Score = 28.0 bits (63), Expect = 2.9
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 7 MLGL-GETDAEVQQTLDDLLAAGVDCVTLGQ 36
+ GL G+T QQ L + G+D V L
Sbjct: 221 IFGLPGQTPEIWQQDLAIVRDLGLDGVDLYA 251
>gnl|CDD|99863 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) citrate synthase
(CS)-II_like. CS catalyzes the condensation of acetyl
coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate
and coenzyme A (CoA), the first step in the citric acid
cycle (TCA or Krebs cycle). 2MCS catalyzes the
condensation of propionyl-coenzyme A (PrCoA) and OAA to
form 2-methylcitrate and CoA during propionate
metabolism. The overall CS reaction is thought to
proceed through three partial reactions: a) the
carbanion or equivalent is generated from AcCoA by base
abstraction of a proton, b) the nucleophilic attack of
this carbanion on OAA to generate citryl-CoA, and c) the
hydrolysis of citryl-CoA to produce citrate and CoA.
This group contains proteins similar to BsCS-II, the
major CS of the gram-positive bacterium Bacillus
subtilis. A mutation in the gene which encodes BsCS-II
(citZ gene) has been described which resulted in a
significant loss of CS activity, partial glutamate
auxotrophy, and a sporulation deficiency, all of which
are characteristic of strains defective in the Krebs
cycle. Streptococcus mutans CS, found in this group, may
participate in a pathway for the anaerobic biosynthesis
of glutamate. This group also contains functionally
uncharacterized CSs of various gram-negative bacteria.
Some of the gram-negative species represented in this
group have a second CS isozyme found in another group.
This group contains proteins which functions exclusively
as either a CS or a 2MCS, as well as those with relaxed
specificity which have dual functions as both a CS and a
2MCS.
Length = 356
Score = 27.6 bits (62), Expect = 2.9
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 130 HGTSTATIMSGLDVFAHNIETVEKLTPYVRDRRAR 164
HG + +M L I +V+ + YV+D+ A
Sbjct: 215 HGGANERVMKML----LEIGSVDNVAAYVKDKLAN 245
>gnl|CDD|234851 PRK00865, PRK00865, glutamate racemase; Provisional.
Length = 261
Score = 27.4 bits (62), Expect = 3.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 12 ETDAEVQQTLDDLLAAGVDCVTLG 35
T +++ L LLAAG+D + LG
Sbjct: 161 VTLEVLREYLAPLLAAGIDTLVLG 184
>gnl|CDD|224606 COG1692, COG1692, Calcineurin-like phosphoesterase [General
function prediction only].
Length = 266
Score = 27.2 bits (61), Expect = 3.7
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 9 GLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQP 57
G+ E + +LL AG D +TLG + K+ L + +P
Sbjct: 46 GITEKIYK------ELLEAGADVITLGNHTWDQKEILDFIDNADRILRP 88
>gnl|CDD|237149 PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed.
Length = 201
Score = 27.0 bits (60), Expect = 4.7
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 94 GSQFAKVKEQL---RTLNLHTVCEEARCPNIGECW-----GGGEHGTSTATIMSGLDVFA 145
G+ F +++ R + L+++CE P IG GG G S + +D+FA
Sbjct: 69 GALFDSDNDEMVIVRDIELYSLCEHHLLPFIGVAHVAYLPGGKVLGLSKIARI--VDMFA 126
Query: 146 HNIETVEKLT 155
++ E LT
Sbjct: 127 RRLQIQENLT 136
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 26.7 bits (60), Expect = 5.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 65 KEYDGKLKREKGENERLRLPP 85
++ + +L+R K E E+L+ PP
Sbjct: 32 EKLERELERLKSELEKLKSPP 52
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 26.5 bits (59), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 13 TDAEVQQTLDDLLAAGVD 30
TD E++ T+ +L AG D
Sbjct: 258 TDEELRATVLELFFAGTD 275
>gnl|CDD|222337 pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase. This
domain includes the enzyme Phosphoenolpyruvate
phosphomutase (EC:5.4.2.9). The PEP mutase from
Streptomyces viridochromogenes has been characterized as
catalyzing the formation of a carbon-phosphorus bond by
converting phosphoenolpyruvate (PEP) to
phosphonopyruvate (P-Pyr). This enzyme has a TIM barrel
fold.
Length = 238
Score = 26.4 bits (59), Expect = 7.4
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 9 GLGETDAEVQQTLDDLLAAGVDCVTL 34
G G++ V +T+ L+ AG + +
Sbjct: 79 GYGDSPENVAETVRRLIEAGAVGINI 104
>gnl|CDD|172884 PRK14408, PRK14408, membrane protein; Provisional.
Length = 257
Score = 26.5 bits (58), Expect = 7.7
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 50 RETFVFQPEPKQH 62
R+T +F + K +
Sbjct: 239 RKTILFHTKSKDN 251
>gnl|CDD|223859 COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide
transport and metabolism].
Length = 287
Score = 26.4 bits (59), Expect = 7.9
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 11 GETDAEVQQTLDDLLAA-GVDCVTLGQYMQ 39
E AE + L +LL G D V L +YMQ
Sbjct: 148 KENKAEAEARLLELLEEYGADLVVLARYMQ 177
>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system
protein KefC; Provisional.
Length = 621
Score = 26.5 bits (59), Expect = 8.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 145 AHNIETVEKLTPYVRDRRARY 165
HN++ VE++ P+ D + R
Sbjct: 550 RHNLQMVEEMAPHENDTKKRA 570
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,303,838
Number of extensions: 735330
Number of successful extensions: 879
Number of sequences better than 10.0: 1
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 46
Length of query: 165
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 75
Effective length of database: 6,945,742
Effective search space: 520930650
Effective search space used: 520930650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)