RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6794
(165 letters)
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO
berkeley structural genomics center, BSGC, PSI, protein
STR initiative; 2.30A {Deinococcus radiodurans} SCOP:
d.159.1.9
Length = 255
Score = 29.6 bits (67), Expect = 0.36
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 22 DDLLAAGVDCVTLG 35
L AG C+TLG
Sbjct: 51 RGALEAGAGCLTLG 64
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography,
structural GENO berkeley structural genomics center,
BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP:
d.159.1.9
Length = 281
Score = 29.3 bits (66), Expect = 0.44
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 9 GLGETDAEVQQTLDDLLAAGVDCVTLG 35
GL E L AGV+ +T+G
Sbjct: 50 GLSLKHYE------FLKEAGVNYITMG 70
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein,
structural genomics, NPPSFA; 2.20A {Thermus
thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Length = 252
Score = 28.9 bits (65), Expect = 0.60
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 22 DDLLAAGVDCVTLG 35
L AGVD V+LG
Sbjct: 51 RLLREAGVDLVSLG 64
>3ist_A Glutamate racemase; structural genomics, cell WALL
biogenesis/degradation, isomerase, peptidoglycan
synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB:
3hfr_A* 3isv_A*
Length = 269
Score = 27.9 bits (63), Expect = 1.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 12 ETDAEVQQTLDDLLAAGVDCVTLG 35
V ++L L + +D V LG
Sbjct: 162 IAKKVVAESLLPLKSTKIDTVILG 185
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL
biogenesis/degradation, cell shape, benzyl purine, MURI
inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis}
PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Length = 290
Score = 27.9 bits (63), Expect = 1.4
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 12 ETDAEVQQTLDDLLAAGVDCVTLG 35
V +TL L G+D + LG
Sbjct: 181 VAKKIVAETLQALQLKGLDTLILG 204
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus
anthracis}
Length = 267
Score = 27.9 bits (63), Expect = 1.7
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 12 ETDAEVQQTLDDLLAAGVDCVTLG 35
V++TL L +D + LG
Sbjct: 160 MAYEVVRETLQPLKNTDIDTLILG 183
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma;
transferase, oligomerisation DOM serine- threonine
kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7
PDB: 2w2c_A 1hkx_A*
Length = 143
Score = 25.9 bits (56), Expect = 4.8
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 26 AAGVDCVTLGQYMQPTKKHLKVSYRETFVFQ 56
AA + + L QY+ + ET V+
Sbjct: 91 AACIAYIRLTQYIDGQGRPRTSQSEETRVWH 121
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles,
endocytosis/exocytosis complex; 2.40A {Saccharomyces
cerevisiae}
Length = 399
Score = 25.9 bits (56), Expect = 6.8
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 31 CVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREK 75
TL +Y+ K + F+ + ++ L E
Sbjct: 224 ADTLDEYLLDIKPQMNSVLFVNFI--DNVIGETIIKFLTALSFEH 266
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 7.8
Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 12/34 (35%)
Query: 60 KQHYLKEYDGKLKREKGENERLRLP---PWLKTK 90
KQ LK+ LK L P L K
Sbjct: 19 KQA-LKKLQASLK--------LYADDSAPALAIK 43
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor,
lysozyme/inhibitor complex, IVY, type-C lysozyme
inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa}
SCOP: d.233.1.1
Length = 137
Score = 25.1 bits (54), Expect = 8.2
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 82 RLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPN 120
+P W+ S + + + L C+ C N
Sbjct: 28 DVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKPHDCGN 66
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer,
structural genomics,struct proteomics in europe, spine;
2.70A {Klebsiella pneumoniae}
Length = 387
Score = 25.6 bits (57), Expect = 9.6
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 136 TIMSGLDVFAHNIE 149
T +G+D H +E
Sbjct: 192 TAATGMDALTHAVE 205
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2,
protein structure initiative, MI center for STR uctural
genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Length = 300
Score = 25.5 bits (57), Expect = 9.7
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
Query: 6 IMLGLGETDAEVQQTLDDLLAAGVDCV 32
I + LG +D + D LA VDC
Sbjct: 117 IQIDLGVSDRTI-----DYLAENVDCA 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0832 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,506,693
Number of extensions: 140861
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 12
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)