RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6794
         (165 letters)



>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus
           aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
          Length = 106

 Score = 25.6 bits (56), Expect = 1.9
 Identities = 9/44 (20%), Positives = 21/44 (47%)

Query: 64  LKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTL 107
           +++Y+ KL+  +   +R  +   +K  +    Q  +  +QL  L
Sbjct: 62  VEDYEKKLELYQKFEQRREIYDEMKQHLSNPEQIQRYIQQLEDL 105


>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 291

 Score = 25.8 bits (56), Expect = 2.7
 Identities = 5/30 (16%), Positives = 11/30 (36%)

Query: 6   IMLGLGETDAEVQQTLDDLLAAGVDCVTLG 35
           ++L  G  +    + +   + AG      G
Sbjct: 223 VILSSGVDEKLFPRAVRVAMEAGASGFLAG 252


>d1z4ra1 d.108.1.1 (A:497-658) Catalytic domain of GCN5 histone
           acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 162

 Score = 25.4 bits (55), Expect = 3.1
 Identities = 5/52 (9%), Positives = 13/52 (25%)

Query: 18  QQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDG 69
               +  +   +                K  + +           Y+K+Y+G
Sbjct: 100 NHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEG 151


>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
           thermophilus [TaxId: 274]}
          Length = 179

 Score = 25.3 bits (54), Expect = 3.2
 Identities = 9/42 (21%), Positives = 11/42 (26%)

Query: 113 CEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETVEKL 154
            E AR   +       E G        GL     N   +  L
Sbjct: 127 LETARVYGLPLLKTVDEEGKLLVEPFKGLYFREANRAILRDL 168


>d1fnga2 d.19.1.1 (A:1-81) Class II MHC alpha chain, N-terminal
          domain {Mouse (Mus musculus), I-EK [TaxId: 10090]}
          Length = 81

 Score = 24.3 bits (53), Expect = 4.2
 Identities = 4/23 (17%), Positives = 11/23 (47%)

Query: 47 VSYRETFVFQPEPKQHYLKEYDG 69
             +  F   P+ +  ++ ++DG
Sbjct: 6  TIIQAEFYLLPDKRGEFMFDFDG 28


>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 315

 Score = 24.6 bits (53), Expect = 6.7
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 11/60 (18%)

Query: 81  LRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSG 140
           + L P  K KI  G     ++++                + GECW    H    +T+ +G
Sbjct: 5   IFLTPVFKEKI-WGGT--ALRDRFG--------YSIPSESTGECWAISAHPKGPSTVANG 53


>d1uuza_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 130

 Score = 24.0 bits (52), Expect = 6.7
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 75  KGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPN 120
           KGE+    +P W+       S    +  + +   L   C+   C N
Sbjct: 24  KGES---DVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKPHDCGN 66


>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus
           casei [TaxId: 1582]}
          Length = 80

 Score = 23.3 bits (50), Expect = 9.1
 Identities = 3/21 (14%), Positives = 7/21 (33%)

Query: 142 DVFAHNIETVEKLTPYVRDRR 162
           +      +T  K+   V   +
Sbjct: 60  EFDRKEWDTPNKIIAKVEQAQ 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 608,635
Number of extensions: 26981
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 10
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)