Query psy6796
Match_columns 123
No_of_seqs 124 out of 739
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 18:35:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hnh_A DNA polymerase III alph 64.4 4.5 0.00015 37.0 3.3 50 13-71 344-395 (910)
2 2hpi_A DNA polymerase III alph 55.8 6.5 0.00022 37.5 2.8 50 13-71 406-457 (1220)
3 2k9i_A Plasmid PRN1, complete 45.7 24 0.00082 20.0 3.3 32 54-85 2-33 (55)
4 2ba3_A NIKA; dimer, bacterial 44.9 13 0.00045 21.6 2.1 26 61-86 15-40 (51)
5 2ki0_A DS119; beta-alpha-beta, 43.4 17 0.0006 21.8 2.4 21 69-89 13-33 (36)
6 3rpd_A Methionine synthase (B1 42.9 28 0.00097 28.1 4.4 58 46-107 20-89 (357)
7 4huj_A Uncharacterized protein 33.5 22 0.00076 25.4 2.1 28 69-96 175-202 (220)
8 1e5p_A Aphrodisin; lipocalin, 33.4 29 0.00098 23.0 2.5 20 68-87 118-137 (151)
9 1bj7_A D 2; allergen, lipocali 30.3 31 0.0011 23.1 2.3 20 68-87 123-142 (156)
10 3fiq_A OBP1, RCG36470, odorant 29.9 34 0.0012 23.5 2.5 19 68-86 124-142 (157)
11 1dzk_A PIG OBP, odorant-bindin 26.5 44 0.0015 22.2 2.5 20 68-87 124-143 (157)
12 3te3_A Polycystic kidney disea 26.0 40 0.0014 20.4 2.0 18 66-83 2-19 (39)
13 3sao_A Extracellular fatty aci 25.5 47 0.0016 22.5 2.6 19 68-86 120-138 (160)
14 3kq0_A Alpha-1-acid glycoprote 25.4 27 0.00094 24.4 1.4 19 68-86 133-151 (192)
15 2hlv_A Odorant-binding protein 25.2 48 0.0016 22.2 2.5 20 67-86 124-143 (160)
16 1ypx_A Putative vitamin-B12 in 24.8 18 0.00063 29.0 0.4 53 46-100 9-73 (375)
17 2ra6_A Trichosurin; lipocalin, 24.0 52 0.0018 22.1 2.6 21 67-87 134-154 (166)
18 3dgp_A RNA polymerase II trans 23.6 1.3E+02 0.0044 20.2 4.4 49 65-114 27-77 (80)
19 1exs_A Beta-lactoglobulin; lip 22.4 51 0.0017 22.0 2.2 20 68-87 128-147 (160)
20 1ew3_A Allergen EQU C 1; lipoc 21.8 62 0.0021 21.4 2.5 20 67-86 122-141 (159)
21 3dom_A RNA polymerase II trans 21.8 1.6E+02 0.0053 21.0 4.8 49 65-114 55-105 (108)
22 3cqn_A Violaxanthin DE-epoxida 21.7 49 0.0017 25.4 2.2 33 67-99 143-182 (185)
23 3jwg_A HEN1, methyltransferase 21.1 68 0.0023 21.8 2.7 31 61-91 159-190 (219)
24 3hjg_A Putative alpha-ribazole 20.3 74 0.0025 22.6 2.9 32 69-100 31-64 (213)
25 2k1o_A Putative; repressor, tr 20.3 58 0.002 21.8 2.1 22 61-82 15-36 (66)
26 3o22_A Prostaglandin-H2 D-isom 20.2 69 0.0023 21.5 2.5 21 67-87 126-146 (162)
27 1f8m_A Isocitrate lyase, ICL; 20.0 87 0.003 26.7 3.7 45 68-112 325-370 (429)
No 1
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=64.44 E-value=4.5 Score=37.04 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=37.3
Q ss_pred hhHhh-hhccccccC-CCCccccchhhhhhhccccccccccccCCCCCCCccccceecChH
Q psy6796 13 LWDEV-WQGSMGLNC-PGGLSSMGSKLAYSMGFALNCPVVEYVTPEKYAHWEKVVEYVTPE 71 (123)
Q Consensus 13 ~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~lTIGQYLqPSk~~~HlpV~rYVtPE 71 (123)
+||=| |--+.|+-| ||==|.-||-+||.+|..- +-|-+. .|+-.||+.||
T Consensus 344 V~d~v~~a~~~gi~vGpGRGSaagSlVay~LgIT~-------vDPl~~--~LlFERFLnpe 395 (910)
T 2hnh_A 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITD-------LDPLEF--DLLFERFLNPE 395 (910)
T ss_dssp HHHHHHHHHHTTCCBCSCCTTGGGCHHHHHTTSSC-------SCTTTT--TCCGGGTSCTT
T ss_pred HHHHHHHHHHCCceeCCCcccHHHHHHHHHhCCCC-------cCcccc--CCchhhccCCc
Confidence 46665 667899999 9999999999999999742 334445 56666666665
No 2
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=55.75 E-value=6.5 Score=37.53 Aligned_cols=50 Identities=28% Similarity=0.571 Sum_probs=35.3
Q ss_pred hhHhh-hhcccccc-CCCCccccchhhhhhhccccccccccccCCCCCCCccccceecChH
Q psy6796 13 LWDEV-WQGSMGLN-CPGGLSSMGSKLAYSMGFALNCPVVEYVTPEKYAHWEKVVEYVTPE 71 (123)
Q Consensus 13 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~lTIGQYLqPSk~~~HlpV~rYVtPE 71 (123)
+||=| |--+.|+- |||==|.-||-.||.+|+.- +-|-+. .|+-.||..||
T Consensus 406 V~D~I~~Ak~~gI~VGpGRGSaAgSlVaY~LgIT~-------vDPl~~--~LlFERFLnpe 457 (1220)
T 2hpi_A 406 VQDYINWARGHGVSVGPGRGSAAGSLVAYAVGITN-------IDPLRF--GLLFERFLNPE 457 (1220)
T ss_dssp HHHHHHHHHTTTCCBCSCCGGGGGCHHHHHTTSCC-------SCTTTT--TCCHHHHSCTT
T ss_pred HHHHHHHHHHCCCcccCCCChHHHHHHHHHhCCCC-------cCcccc--CCChhhcCCcc
Confidence 46655 77788988 99999999999999999642 234444 45555555554
No 3
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=45.72 E-value=24 Score=20.05 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=24.0
Q ss_pred CCCCCCCccccceecChHHHHHHHHHHHhcCC
Q psy6796 54 TPEKYAHWEKVVEYVTPEKYAHWEKVGNSMGF 85 (123)
Q Consensus 54 qPSk~~~HlpV~rYVtPEeF~~~k~~a~~mGF 85 (123)
||..++--..+.=.++++.++.+.++|.+.|.
T Consensus 2 RP~~~~~~~~i~vrl~~el~~~l~~~a~~~g~ 33 (55)
T 2k9i_A 2 RPYKLLNGIKLGVYIPQEWHDRLMEIAKEKNL 33 (55)
T ss_dssp CCSSTTCCEEEEEEECHHHHHHHHHHHHHHTC
T ss_pred CCCCCCccceEEEEcCHHHHHHHHHHHHHhCC
Confidence 45433223456668999999999999999995
No 4
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=44.86 E-value=13 Score=21.63 Aligned_cols=26 Identities=12% Similarity=-0.002 Sum_probs=21.7
Q ss_pred ccccceecChHHHHHHHHHHHhcCCc
Q psy6796 61 WEKVVEYVTPEKYAHWEKVGNSMGFL 86 (123)
Q Consensus 61 HlpV~rYVtPEeF~~~k~~a~~mGF~ 86 (123)
...|.=.++|||++.+++.|...|-.
T Consensus 15 ~~~i~vRlt~eE~~~l~~~A~~~g~s 40 (51)
T 2ba3_A 15 TVVRTLRFSPVEDETIRKKAEDSGLT 40 (51)
T ss_dssp SEEEEEEECHHHHHHHHHHHHHHTCC
T ss_pred ceeEEEEECHHHHHHHHHHHHHhCCC
Confidence 35566679999999999999998864
No 5
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=43.37 E-value=17 Score=21.76 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=17.8
Q ss_pred ChHHHHHHHHHHHhcCCceee
Q psy6796 69 TPEKYAHWEKVGNSMGFLYTA 89 (123)
Q Consensus 69 tPEeF~~~k~~a~~mGF~~Va 89 (123)
+|||.+.+++.|++-..+...
T Consensus 13 tpeelkklkeeakkanirvtf 33 (36)
T 2ki0_A 13 TPEELKKLKEEAKKANIRVTF 33 (36)
T ss_dssp CHHHHHHHHHHHHHHCCCCCB
T ss_pred CHHHHHHHHHHHHhccEEEEe
Confidence 899999999999987776543
No 6
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=42.92 E-value=28 Score=28.05 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=40.7
Q ss_pred ccccccccCCCCCCCccccc----eecChHHHHHHHHHH--------HhcCCceeeeccccccchhhhHHHHHH
Q psy6796 46 NCPVVEYVTPEKYAHWEKVV----EYVTPEKYAHWEKVG--------NSMGFLYTASGPLVRSSYKAGEFFIGS 107 (123)
Q Consensus 46 ~lTIGQYLqPSk~~~HlpV~----rYVtPEeF~~~k~~a--------~~mGF~~VaSGPLVRSSY~A~e~~~~~ 107 (123)
.-|||-|+||..- ...-. .=++.++++...+.+ ++.|...|.-|=+.|++|+- +|.+.
T Consensus 20 tt~vGSfprp~~l--~~ar~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~~GldvvtdGE~~R~d~~~--~f~~~ 89 (357)
T 3rpd_A 20 TSTAGSLPKPLWL--AEPETLWSPWKLQGEELITGKHDALRLSLQDQQLAGIDIVSDGEQTRQHFVT--TFIEH 89 (357)
T ss_dssp CCCSSCCCCCTTT--BCTTCSSCCBSCCHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTTTTCSCTTH--HHHHT
T ss_pred cceeccCCCCHHH--HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCcchhhHHH--HHHHh
Confidence 4489999999742 11111 236778887765544 46899999999999999986 35443
No 7
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=33.52 E-value=22 Score=25.43 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHhcCCceeeecccccc
Q psy6796 69 TPEKYAHWEKVGNSMGFLYTASGPLVRS 96 (123)
Q Consensus 69 tPEeF~~~k~~a~~mGF~~VaSGPLVRS 96 (123)
.++.++..+++..++||+.+..||+..+
T Consensus 175 ~~~~~~~v~~l~~~~G~~~~~~G~l~~a 202 (220)
T 4huj_A 175 HSDANRQVAELISSLGFAPVDLGTLAAS 202 (220)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCSHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEeeCChhhc
Confidence 4789999999999999999999998655
No 8
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=33.38 E-value=29 Score=23.04 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=18.3
Q ss_pred cChHHHHHHHHHHHhcCCce
Q psy6796 68 VTPEKYAHWEKVGNSMGFLY 87 (123)
Q Consensus 68 VtPEeF~~~k~~a~~mGF~~ 87 (123)
++||..++++++++++||..
T Consensus 118 l~~e~~~~f~~~~~~~G~~~ 137 (151)
T 1e5p_A 118 LTPEENEILVQFAHEKKIPV 137 (151)
T ss_dssp CCHHHHHHHHHHHHHTTCCG
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 68999999999999999963
No 9
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=30.33 E-value=31 Score=23.08 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=18.3
Q ss_pred cChHHHHHHHHHHHhcCCce
Q psy6796 68 VTPEKYAHWEKVGNSMGFLY 87 (123)
Q Consensus 68 VtPEeF~~~k~~a~~mGF~~ 87 (123)
++||..++++++++++||..
T Consensus 123 l~~e~~~~f~~~~~~~G~~~ 142 (156)
T 1bj7_A 123 FTPEELEKYQQLNSERGVPN 142 (156)
T ss_dssp CCHHHHHHHHHHHHHHTCCG
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 78999999999999999963
No 10
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=29.89 E-value=34 Score=23.49 Aligned_cols=19 Identities=5% Similarity=0.116 Sum_probs=18.0
Q ss_pred cChHHHHHHHHHHHhcCCc
Q psy6796 68 VTPEKYAHWEKVGNSMGFL 86 (123)
Q Consensus 68 VtPEeF~~~k~~a~~mGF~ 86 (123)
++||..++++++++++|+.
T Consensus 124 ~s~e~~e~F~~~~~~~Gl~ 142 (157)
T 3fiq_A 124 LNKAQKQELRKLAEEYNIP 142 (157)
T ss_dssp CCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 8899999999999999985
No 11
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=26.48 E-value=44 Score=22.16 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=18.2
Q ss_pred cChHHHHHHHHHHHhcCCce
Q psy6796 68 VTPEKYAHWEKVGNSMGFLY 87 (123)
Q Consensus 68 VtPEeF~~~k~~a~~mGF~~ 87 (123)
++||..++++++++++||..
T Consensus 124 ~~~e~~~~f~~~~~~~G~~~ 143 (157)
T 1dzk_A 124 IEDQDLEKFKEVTRENGIPE 143 (157)
T ss_dssp CCHHHHHHHHHHHHHTTCCG
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 78999999999999999963
No 12
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=26.00 E-value=40 Score=20.37 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=13.8
Q ss_pred eecChHHHHHHHHHHHhc
Q psy6796 66 EYVTPEKYAHWEKVGNSM 83 (123)
Q Consensus 66 rYVtPEeF~~~k~~a~~m 83 (123)
-||++|||..+.+--.+|
T Consensus 2 ~~Vs~eeF~~L~rRVlql 19 (39)
T 3te3_A 2 GWVSGEEFYMLTRRVLQL 19 (39)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 379999999888765544
No 13
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=25.51 E-value=47 Score=22.50 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=17.9
Q ss_pred cChHHHHHHHHHHHhcCCc
Q psy6796 68 VTPEKYAHWEKVGNSMGFL 86 (123)
Q Consensus 68 VtPEeF~~~k~~a~~mGF~ 86 (123)
++||..++++++++++||.
T Consensus 120 ~~~e~~~~f~~~~~~~G~~ 138 (160)
T 3sao_A 120 VSPTAMAIFRKLARERNYT 138 (160)
T ss_dssp CCHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 7899999999999999995
No 14
>3kq0_A Alpha-1-acid glycoprotein 1; plasma protein, polymorphism, acute phase protein, secreted, pyrrolidone carboxylic acid, lipocalin; 1.80A {Homo sapiens} PDB: 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=25.44 E-value=27 Score=24.40 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=17.6
Q ss_pred cChHHHHHHHHHHHhcCCc
Q psy6796 68 VTPEKYAHWEKVGNSMGFL 86 (123)
Q Consensus 68 VtPEeF~~~k~~a~~mGF~ 86 (123)
++||..+++++.++.+||.
T Consensus 133 v~~e~le~F~~~a~~~G~~ 151 (192)
T 3kq0_A 133 TTKEQLGEFYEALDCLRIP 151 (192)
T ss_dssp CCTTTTHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHCCCC
Confidence 6899999999999999995
No 15
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=25.20 E-value=48 Score=22.22 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=18.3
Q ss_pred ecChHHHHHHHHHHHhcCCc
Q psy6796 67 YVTPEKYAHWEKVGNSMGFL 86 (123)
Q Consensus 67 YVtPEeF~~~k~~a~~mGF~ 86 (123)
-++||..++++++++++||.
T Consensus 124 ~~~~e~~~~f~~~~~~~G~~ 143 (160)
T 2hlv_A 124 NVEDEDLEKFWKLTEDKGID 143 (160)
T ss_dssp SCCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 37899999999999999996
No 16
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=24.79 E-value=18 Score=29.00 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=36.9
Q ss_pred ccccccccCCCCCCCcccccee----cChHHHHHHHHHH--------HhcCCceeeeccccccchhh
Q psy6796 46 NCPVVEYVTPEKYAHWEKVVEY----VTPEKYAHWEKVG--------NSMGFLYTASGPLVRSSYKA 100 (123)
Q Consensus 46 ~lTIGQYLqPSk~~~HlpV~rY----VtPEeF~~~k~~a--------~~mGF~~VaSGPLVRSSY~A 100 (123)
.-|||-|+||..- ...-.+| ++.++++...+.+ ++.|...|.-|=+-|++++-
T Consensus 9 tt~vGSfprp~~l--~~ar~~~~~g~i~~~~l~~~~~~~i~~~v~~Q~~~GldvvtdGE~~R~d~~~ 73 (375)
T 1ypx_A 9 ADHVGSILRTKGI--KDAREKFQSGEITALELRKIENTEIKYIVEKQKEVGLKSITDGEFRRAWWHF 73 (375)
T ss_dssp BCCCSCCCCCHHH--HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHTCSEECCTTTTC--CCH
T ss_pred cceeCcCCCCHHH--HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcchhhHHH
Confidence 4589999999643 2333444 7778877664433 46799999999999999874
No 17
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A
Probab=24.00 E-value=52 Score=22.08 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=18.3
Q ss_pred ecChHHHHHHHHHHHhcCCce
Q psy6796 67 YVTPEKYAHWEKVGNSMGFLY 87 (123)
Q Consensus 67 YVtPEeF~~~k~~a~~mGF~~ 87 (123)
-++||..++++++++++||..
T Consensus 134 ~~~~e~~~~f~~~~~~~G~~~ 154 (166)
T 2ra6_A 134 NLSNEIKKRFEEDFMNRGFRR 154 (166)
T ss_dssp CCCHHHHHHHHHHHHTTTCCG
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 368999999999999999863
No 18
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=23.57 E-value=1.3e+02 Score=20.19 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=33.2
Q ss_pred ceecChHHHHHHHHHHHhcCCceeeeccccccchh--hhHHHHHHHHHHHHH
Q psy6796 65 VEYVTPEKYAHWEKVGNSMGFLYTASGPLVRSSYK--AGEFFIGSVLRNRKA 114 (123)
Q Consensus 65 ~rYVtPEeF~~~k~~a~~mGF~~VaSGPLVRSSY~--A~e~~~~~~l~~~~~ 114 (123)
..|-+.++|+...++|+++|... .+-|--|--+- ++...++..++.++.
T Consensus 27 ~~F~s~~efe~~~~yA~e~gvLl-W~~~~kr~~~V~~~gh~~vk~f~k~~~~ 77 (80)
T 3dgp_A 27 SDFETSQEYNLLSKYAQDIGVLL-WKDDKKKKFFISKEGNSQVLDFAKRKLK 77 (80)
T ss_dssp ECCSCHHHHHHHHHHHHHTTCEE-EEETTTTEEEEEGGGHHHHHHHHTTC--
T ss_pred ecCCCHHHHHHHHHHHHHcCeEE-EecCCccEEEEeccchHHHHHHHHHHHh
Confidence 45788999999999999999964 56666666553 333445665555443
No 19
>1exs_A Beta-lactoglobulin; lipocalin fold, lipid-binding protein; 2.39A {Sus scrofa} SCOP: b.60.1.1
Probab=22.40 E-value=51 Score=22.00 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=18.3
Q ss_pred cChHHHHHHHHHHHhcCCce
Q psy6796 68 VTPEKYAHWEKVGNSMGFLY 87 (123)
Q Consensus 68 VtPEeF~~~k~~a~~mGF~~ 87 (123)
++||..++++++++++||..
T Consensus 128 ~~~e~~~~f~~~~~~~G~~~ 147 (160)
T 1exs_A 128 VDDQIREKFEDALKTLSVPM 147 (160)
T ss_dssp CCHHHHHHHHHHHTTSSSCE
T ss_pred CCHHHHHHHHHHHHhcCCCc
Confidence 68999999999999999975
No 20
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1
Probab=21.80 E-value=62 Score=21.40 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=17.9
Q ss_pred ecChHHHHHHHHHHHhcCCc
Q psy6796 67 YVTPEKYAHWEKVGNSMGFL 86 (123)
Q Consensus 67 YVtPEeF~~~k~~a~~mGF~ 86 (123)
-++|+..++++++++++||.
T Consensus 122 ~~~~~~~~~f~~~~~~~G~~ 141 (159)
T 1ew3_A 122 DVSPEIKEEFVKIVQKRGIV 141 (159)
T ss_dssp SCCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 36899999999999999996
No 21
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=21.79 E-value=1.6e+02 Score=20.98 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=33.6
Q ss_pred ceecChHHHHHHHHHHHhcCCceeeeccccccchh--hhHHHHHHHHHHHHH
Q psy6796 65 VEYVTPEKYAHWEKVGNSMGFLYTASGPLVRSSYK--AGEFFIGSVLRNRKA 114 (123)
Q Consensus 65 ~rYVtPEeF~~~k~~a~~mGF~~VaSGPLVRSSY~--A~e~~~~~~l~~~~~ 114 (123)
..|-+.++|+...++|+++|... .+-+--|--+- .+...++..+++++.
T Consensus 55 ~dF~s~~efe~v~~yA~e~gvLl-W~d~~kr~~~Vs~egh~~vk~f~Kr~~~ 105 (108)
T 3dom_A 55 SDFETSQEYNLLSKYAQDIGVLL-WKDDKKKKFFISKEGNSQVLDFAKRKLK 105 (108)
T ss_dssp ECCSCHHHHHHHHHHHHHHTCEE-EEEGGGTEEEEEGGGHHHHHHHHHHHC-
T ss_pred ecCCCHHHHHHHHHHHHHcCeEE-EecCCccEEEEeccchHHHHHHHHHHHh
Confidence 45888999999999999999964 55666665553 333445665555443
No 22
>3cqn_A Violaxanthin DE-epoxidase, chloroplast; lipocalin, enzyme, xanthophyll cycle, non photochemical quenching, NPQ, antheraxanthin, zeaxanthin; 2.00A {Arabidopsis thaliana} PDB: 3cqr_A
Probab=21.65 E-value=49 Score=25.36 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=21.2
Q ss_pred ecChHHHHHHHHHHHhcCCcee-------eeccccccchh
Q psy6796 67 YVTPEKYAHWEKVGNSMGFLYT-------ASGPLVRSSYK 99 (123)
Q Consensus 67 YVtPEeF~~~k~~a~~mGF~~V-------aSGPLVRSSY~ 99 (123)
-++||-.++++++|++.||..= .|||--||--|
T Consensus 143 ~l~peale~f~~fa~~~Gl~~e~~~~~dn~c~~~~~~~~~ 182 (185)
T 3cqn_A 143 VLPNSIIPELEKAAKSIGRDFSTFIRTDNTCGPEPRSHHH 182 (185)
T ss_dssp SCCGGGHHHHHHHHHHTTCCGGGSEECCCCCC--------
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHEEEecCCCCCCCccccc
Confidence 3789999999999999999753 47787777544
No 23
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=21.09 E-value=68 Score=21.82 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=22.7
Q ss_pred ccccceecChHHHHHH-HHHHHhcCCceeeec
Q psy6796 61 WEKVVEYVTPEKYAHW-EKVGNSMGFLYTASG 91 (123)
Q Consensus 61 HlpV~rYVtPEeF~~~-k~~a~~mGF~~VaSG 91 (123)
|..-..++++++|..| ++++.+-||.....|
T Consensus 159 ~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~ 190 (219)
T 3jwg_A 159 HRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQ 190 (219)
T ss_dssp GGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred ccCceeeecHHHHHHHHHHHHHHCCcEEEEEe
Confidence 4444566899999976 446778899887775
No 24
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=20.32 E-value=74 Score=22.58 Aligned_cols=32 Identities=16% Similarity=0.032 Sum_probs=18.7
Q ss_pred ChHHHHHHHHHHHhc--CCceeeeccccccchhh
Q psy6796 69 TPEKYAHWEKVGNSM--GFLYTASGPLVRSSYKA 100 (123)
Q Consensus 69 tPEeF~~~k~~a~~m--GF~~VaSGPLVRSSY~A 100 (123)
++.=-+.-++.+..+ .|..|.|+||.|.-=-|
T Consensus 31 t~~G~~QA~~~~~~l~~~~~~i~sSpl~Ra~qTA 64 (213)
T 3hjg_A 31 KEAEQQQIAMAWKTKGYDVAGIISSPLSRCHDLA 64 (213)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCEEECSSHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHH
Confidence 343333334444444 67788888888875444
No 25
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=20.31 E-value=58 Score=21.79 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=19.5
Q ss_pred ccccceecChHHHHHHHHHHHh
Q psy6796 61 WEKVVEYVTPEKYAHWEKVGNS 82 (123)
Q Consensus 61 HlpV~rYVtPEeF~~~k~~a~~ 82 (123)
..-|.=|.+.||++.+++.|.+
T Consensus 15 ~~~Vs~Y~SkEey~~L~klA~e 36 (66)
T 2k1o_A 15 NFSVTFYLSKEEHDVLRRLADE 36 (66)
T ss_dssp CEEEEEEEEHHHHHHHHHHHHT
T ss_pred ceEEEEEecHHHHHHHHHHHHH
Confidence 4678889999999999999975
No 26
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Probab=20.23 E-value=69 Score=21.46 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=18.4
Q ss_pred ecChHHHHHHHHHHHhcCCce
Q psy6796 67 YVTPEKYAHWEKVGNSMGFLY 87 (123)
Q Consensus 67 YVtPEeF~~~k~~a~~mGF~~ 87 (123)
-++|+..++++++++++||..
T Consensus 126 ~~~~~~~~~f~~~~~~~G~~~ 146 (162)
T 3o22_A 126 TPRAELKEKFTAFCKAQGFTE 146 (162)
T ss_dssp SCCHHHHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 378999999999999999963
No 27
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A
Probab=20.02 E-value=87 Score=26.69 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=35.3
Q ss_pred cChHHHHHHHHHHHhcCCceeee-ccccccchhhhHHHHHHHHHHH
Q psy6796 68 VTPEKYAHWEKVGNSMGFLYTAS-GPLVRSSYKAGEFFIGSVLRNR 112 (123)
Q Consensus 68 VtPEeF~~~k~~a~~mGF~~VaS-GPLVRSSY~A~e~~~~~~l~~~ 112 (123)
+++++.+.+.+.-.+|||+.+.- .++.|+.++|-+.+.+.+.++.
T Consensus 325 ~~~~~~~~f~~eL~~lG~~~v~~~l~~~raa~~a~~~~a~~~~~~G 370 (429)
T 1f8m_A 325 LDDATIAKFQKELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQ 370 (429)
T ss_dssp CCHHHHHHHHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHhHHHHHHHHcCCeEEEECcHHHHHHHHHHHHHHHHHHHcC
Confidence 78999999888888899997654 5678888888877777766543
Done!