RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6796
         (123 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 0.30
 Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 14/72 (19%)

Query: 33  MGSKLAYSMGFALNCPVVEYVTP-----EKYAHWEKVVEYVTPEKYAHWEKVGNSMGFLY 87
           +  K+ +    A N      +       + Y        Y+      +   V   + FL 
Sbjct: 503 LEQKIRHD-STAWNAS--GSILNTLQQLKFYK------PYICDNDPKYERLVNAILDFLP 553

Query: 88  TASGPLVRSSYK 99
                L+ S Y 
Sbjct: 554 KIEENLICSKYT 565


>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP;
           2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A*
           1dkm_A 1dkn_A 1dko_A 1dkl_A
          Length = 410

 Score = 26.1 bits (56), Expect = 3.8
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 46  NCPVVEYVTPEKYAHWEKVVEYVTPEKYAHWEKVGNSMGFLYTASGPLVRSS-YKAGEFF 104
              +++ VTP+ +  W   + ++TP        +G+       A G L +    ++G+  
Sbjct: 25  ATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVA 84

Query: 105 IGSVLRNR 112
           I + +  R
Sbjct: 85  IIADVDER 92


>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
           aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
           radiodurans}
          Length = 851

 Score = 24.8 bits (54), Expect = 9.7
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 89  ASGPLVRSSYKAGE-----FFIGSVLRNRKAAAEAKTENA 123
           A+ P    +Y+ G+     FF G V+R     A+ +   A
Sbjct: 805 AANPDKAEAYRGGKTALLGFFTGQVMRATAGKADPQALAA 844


>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
           1.90A {Staphylococcus aureus}
          Length = 693

 Score = 24.8 bits (55), Expect = 9.7
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 11/39 (28%)

Query: 31  SSMGSKLAYSMGF---ALNC-PV-------VEYVTPEKY 58
           S M  K+A S+     A  C PV       V    PE+Y
Sbjct: 577 SEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEY 615


>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
           50S subunit, cryo-EM, REAL-space refinement,
           ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
          Length = 704

 Score = 24.8 bits (55), Expect = 9.9
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 11/39 (28%)

Query: 31  SSMGSKLAYSMGF---ALNC-PV-------VEYVTPEKY 58
           S +  KLA S+ F        PV       VE  TPE+ 
Sbjct: 589 SELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEEN 627


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,946,748
Number of extensions: 102013
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 11
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)