RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6796
         (123 letters)



>d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase
           {Bacteriophage PHI-6 [TaxId: 10879]}
          Length = 664

 Score = 30.4 bits (68), Expect = 0.043
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 21  SMGLNCPGGLSSMGSKLAYSMGFALNCPVVEYVTPEKYAHWEK 63
             G++ P G      + A    FALN P++    P +   + K
Sbjct: 255 QYGIDVPDGFFCERRRTAMGGPFALNAPIMAVAQPVRNKIYSK 297


>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 85

 Score = 23.3 bits (50), Expect = 5.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 45 LNCPVVEYVTPEKY 58
          + C V+EY+ P++Y
Sbjct: 68 IKCAVMEYMAPKEY 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 481,520
Number of extensions: 19519
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 4
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (21.9 bits)