BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6799
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FB2|A Chain A, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|B Chain B, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|C Chain C, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|D Chain D, Crystal Structure Of Substrate-Free P450cin
pdb|4FYZ|A Chain A, Crystal Structure Of Nitrosyl Cytochrome P450cin
pdb|4FYZ|B Chain B, Crystal Structure Of Nitrosyl Cytochrome P450cin
pdb|4FMX|A Chain A, Crystal Structure Of Substrate-Bound P450cin
pdb|4FMX|B Chain B, Crystal Structure Of Substrate-Bound P450cin
Length = 398
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 17 YPTKDFACDLSSLDPPVGPRQRVHVSEMLKEKARKVFTKKMLHKKVPILQWLPEYNSESA 76
Y T +F ++ D PV + R V++ +A +FT+++ ++ E A
Sbjct: 75 YETGEFELMMAGQDDPVHKKYRQLVAKPFSPEATDLFTEQLRQSTNDLIDARIELGEGDA 134
Query: 77 VSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVG 108
+ L + LT I + GLPP+ G
Sbjct: 135 ATWLANEIPARLTAI--------LLGLPPEDG 158
>pdb|1T2B|A Chain A, Crystal Structure Of Cytochrome P450cin Complexed With Its
Substrate 1,8-Cineole
pdb|1T2B|B Chain B, Crystal Structure Of Cytochrome P450cin Complexed With Its
Substrate 1,8-Cineole
Length = 397
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 17 YPTKDFACDLSSLDPPVGPRQRVHVSEMLKEKARKVFTKKMLHKKVPILQWLPEYNSESA 76
Y T +F ++ D PV + R V++ +A +FT+++ ++ E A
Sbjct: 74 YETGEFELMMAGQDDPVHKKYRQLVAKPFSPEATDLFTEQLRQSTNDLIDARIELGEGDA 133
Query: 77 VSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVG 108
+ L + LT I + GLPP+ G
Sbjct: 134 ATWLANEIPARLTAI--------LLGLPPEDG 157
>pdb|3BDZ|A Chain A, The Role Of Asn 242 In P450cin
pdb|3BDZ|B Chain B, The Role Of Asn 242 In P450cin
pdb|3BE0|A Chain A, The Role Of Asn 242 In P450cin
pdb|3BE0|B Chain B, The Role Of Asn 242 In P450cin
Length = 397
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 17 YPTKDFACDLSSLDPPVGPRQRVHVSEMLKEKARKVFTKKMLHKKVPILQWLPEYNSESA 76
Y T +F ++ D PV + R V++ +A +FT+++ ++ E A
Sbjct: 74 YETGEFELMMAGQDDPVHKKYRQLVAKPFSPEATDLFTEQLRQSTNDLIDARIELGEGDA 133
Query: 77 VSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVG 108
+ L + LT I + GLPP+ G
Sbjct: 134 ATWLANEIPARLTAI--------LLGLPPEDG 157
>pdb|4GWE|A Chain A, W116l-Oye1 Complexed With (R)-Carvone
pdb|4GXM|A Chain A, Oye1-W116l In Complex With Aromatic Product Of R-Carvone
Dismutation
Length = 400
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 56 KMLH-KKVPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGL 103
+ LH +P W EY ++ A +T G + PQA Y N G+
Sbjct: 41 RALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGV 89
>pdb|1BWK|A Chain A, Old Yellow Enzyme (Oye1) Mutant H191n
Length = 399
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 56 KMLH-KKVPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGL 103
+ LH +P W EY ++ A +T G + PQA Y N G+
Sbjct: 40 RALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGV 88
>pdb|3RND|A Chain A, W116i-Oye1 Complexed With
2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 399
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 56 KMLH-KKVPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGL 103
+ LH +P W EY ++ A +T G + PQA Y N G+
Sbjct: 40 RALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGV 88
>pdb|3TXZ|A Chain A, Oye1-W116q Complexed With R-Carvone
Length = 400
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 56 KMLH-KKVPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGL 103
+ LH +P W EY ++ A +T G + PQA Y N G+
Sbjct: 41 RALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGV 89
>pdb|4GE8|A Chain A, Oye1-W116i Complexed With (S)-Carvone
Length = 400
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 56 KMLH-KKVPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGL 103
+ LH +P W EY ++ A +T G + PQA Y N G+
Sbjct: 41 RALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGV 89
>pdb|4GBU|A Chain A, Oye1-W116a In Complex With Aromatic Product Of S-Carvone
Dismutation
Length = 400
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 56 KMLH-KKVPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGL 103
+ LH +P W EY ++ A +T G + PQA Y N G+
Sbjct: 41 RALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGV 89
>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h
Length = 399
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 56 KMLH-KKVPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGL 103
+ LH +P W EY ++ A +T G + PQA Y N G+
Sbjct: 40 RALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGV 88
>pdb|1K02|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
pdb|1K03|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
Complexed With Para-Hydroxy Benzaldehyde
Length = 399
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 56 KMLH-KKVPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGL 103
+ LH +P W EY ++ A +T G + PQA Y N G+
Sbjct: 40 RALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGV 88
>pdb|1OYA|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYB|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYC|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|3TX9|A Chain A, Oye1 Complexed With 2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 400
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 56 KMLH-KKVPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGL 103
+ LH +P W EY ++ A +T G + PQA Y N G+
Sbjct: 41 RALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGV 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,879,986
Number of Sequences: 62578
Number of extensions: 175504
Number of successful extensions: 359
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 12
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)