Query psy6799
Match_columns 176
No_of_seqs 159 out of 1210
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 18:38:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236|consensus 100.0 9.1E-39 2E-43 302.4 10.1 124 52-175 55-191 (665)
2 PF13792 Sulfate_tra_GLY: Sulf 100.0 1.1E-31 2.3E-36 195.6 7.3 83 62-144 1-84 (84)
3 PRK11660 putative transporter; 100.0 8.1E-31 1.7E-35 243.4 9.6 119 57-175 5-128 (568)
4 TIGR00815 sulP high affinity s 100.0 1E-30 2.2E-35 242.4 8.0 113 63-175 1-122 (563)
5 COG0659 SUL1 Sulfate permease 100.0 1.2E-29 2.7E-34 236.2 9.3 119 57-175 2-123 (554)
6 TIGR03173 pbuX xanthine permea 93.9 0.23 4.9E-06 44.8 7.3 86 86-174 10-106 (406)
7 TIGR03616 RutG pyrimidine util 93.2 0.82 1.8E-05 42.0 9.9 98 75-172 28-132 (429)
8 TIGR00834 ae anion exchange pr 92.7 0.39 8.4E-06 48.4 7.5 94 81-174 373-478 (900)
9 PF00955 HCO3_cotransp: HCO3- 83.5 0.77 1.7E-05 43.5 2.3 93 83-175 39-143 (510)
10 COG2252 Xanthine/uracil/vitami 82.9 9 0.00019 35.9 8.9 96 73-171 16-123 (436)
11 KOG1172|consensus 81.9 2.6 5.7E-05 42.4 5.3 83 93-175 376-470 (876)
12 PRK10720 uracil transporter; P 81.5 6.9 0.00015 35.9 7.6 75 87-169 30-106 (428)
13 COG1296 AzlC Predicted branche 77.8 22 0.00048 30.6 9.1 56 73-130 9-64 (238)
14 PF06686 SpoIIIAC: Stage III s 69.9 12 0.00027 24.8 4.5 41 133-173 8-49 (58)
15 PF00860 Xan_ur_permease: Perm 68.6 20 0.00044 32.1 7.0 92 78-171 2-111 (389)
16 PHA00736 hypothetical protein 49.2 76 0.0016 22.6 5.7 69 93-162 3-72 (79)
17 COG0628 yhhT Predicted permeas 46.8 89 0.0019 27.4 7.2 41 85-125 226-269 (355)
18 TIGR00801 ncs2 uracil-xanthine 41.8 2.7E+02 0.0059 25.3 9.9 80 86-169 20-110 (415)
19 PF11840 DUF3360: Protein of u 35.9 1.9E+02 0.0041 27.4 7.6 113 54-174 42-166 (492)
20 PRK10692 hypothetical protein; 31.7 1.1E+02 0.0024 22.8 4.5 46 73-120 5-54 (92)
21 PF04206 MtrE: Tetrahydrometha 31.4 52 0.0011 28.9 3.1 22 101-122 52-73 (269)
22 TIGR02872 spore_ytvI sporulati 30.0 1.7E+02 0.0037 24.8 6.2 45 82-126 223-270 (341)
23 COG0573 PstC ABC-type phosphat 29.3 3.6E+02 0.0078 24.3 8.2 35 65-99 64-104 (310)
24 PF01594 UPF0118: Domain of un 26.0 2.8E+02 0.0061 23.4 6.8 44 82-125 209-255 (327)
25 PRK11412 putative uracil/xanth 25.8 3.5E+02 0.0076 25.1 7.8 84 85-170 22-121 (433)
26 PF06738 DUF1212: Protein of u 24.9 1.5E+02 0.0032 23.5 4.6 28 94-121 114-141 (193)
27 PF10762 DUF2583: Protein of u 24.1 1.8E+02 0.0038 21.6 4.4 45 74-120 6-54 (89)
28 TIGR02848 spore_III_AC stage I 22.4 2.7E+02 0.0058 19.5 4.8 40 131-170 10-49 (64)
29 PF09788 Tmemb_55A: Transmembr 20.8 87 0.0019 27.5 2.6 51 70-122 192-242 (256)
30 PRK00972 tetrahydromethanopter 20.6 1.1E+02 0.0025 27.1 3.3 22 101-122 59-80 (292)
31 TIGR00801 ncs2 uracil-xanthine 20.2 3.3E+02 0.0071 24.7 6.4 54 79-132 235-298 (415)
32 PRK11412 putative uracil/xanth 20.1 5.3E+02 0.012 23.9 7.8 55 80-134 242-306 (433)
No 1
>KOG0236|consensus
Probab=100.00 E-value=9.1e-39 Score=302.43 Aligned_cols=124 Identities=43% Similarity=0.767 Sum_probs=116.1
Q ss_pred HhhHHHHhhhccccCcCCCCCh-hhhhHHHHHHHHHHHhhhchhhHHHHHhCCCcchhhhhhhhhhhhhhhcCCCCcccc
Q psy6799 52 VFTKKMLHKKVPILQWLPEYNS-ESAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYTIFGSCKDSAI 130 (176)
Q Consensus 52 ~~~~~~~~~~~Pil~Wl~~Y~~-~~l~~D~iAGlTval~~IPq~mAyA~lAGlpP~~GLYsa~~~~liyalfGsS~~~~~ 130 (176)
.+.++++.+++|+++|+|+|++ +|+..|++||+|||+++|||+||||.+||+||+|||||+|+|+++|++||+|||+++
T Consensus 55 ~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~l~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isi 134 (665)
T KOG0236|consen 55 NKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGSLSVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSI 134 (665)
T ss_pred HHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeeeeecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccc
Confidence 3467789999999999999996 999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhc------------ccHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6799 131 GPTAIMSILTRENLHG------------LGPQFAVFLTFVSGIVQLFMGLLQLALIT 175 (176)
Q Consensus 131 Gp~a~~sll~~~~v~~------------~~~~~~~~lt~l~Gviql~~gllrLG~l~ 175 (176)
||+|++|+|+++++++ ..++.+.++||++|++|++||+|||||++
T Consensus 135 G~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt~l~Giiq~~mG~lrLGfl~ 191 (665)
T KOG0236|consen 135 GPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLTFLTGIIQLILGLLRLGFLV 191 (665)
T ss_pred cHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 9999999999966652 34678999999999999999999999985
No 2
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.97 E-value=1.1e-31 Score=195.62 Aligned_cols=83 Identities=46% Similarity=0.889 Sum_probs=80.7
Q ss_pred ccccCcCCCCC-hhhhhHHHHHHHHHHHhhhchhhHHHHHhCCCcchhhhhhhhhhhhhhhcCCCCccccchhHHHHHHH
Q psy6799 62 VPILQWLPEYN-SESAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYTIFGSCKDSAIGPTAIMSILT 140 (176)
Q Consensus 62 ~Pil~Wl~~Y~-~~~l~~D~iAGlTval~~IPq~mAyA~lAGlpP~~GLYsa~~~~liyalfGsS~~~~~Gp~a~~sll~ 140 (176)
+|+++|+++|+ |+|+++|++||+|+++++|||+||||.+||+||++|||++++++++|++||+|||+++||++.+|+++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 69999999999 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q psy6799 141 RENL 144 (176)
Q Consensus 141 ~~~v 144 (176)
++++
T Consensus 81 ~~~v 84 (84)
T PF13792_consen 81 ASVV 84 (84)
T ss_pred HHhC
Confidence 8764
No 3
>PRK11660 putative transporter; Provisional
Probab=99.97 E-value=8.1e-31 Score=243.45 Aligned_cols=119 Identities=33% Similarity=0.559 Sum_probs=111.2
Q ss_pred HHhhhccccC-----cCCCCChhhhhHHHHHHHHHHHhhhchhhHHHHHhCCCcchhhhhhhhhhhhhhhcCCCCccccc
Q psy6799 57 MLHKKVPILQ-----WLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYTIFGSCKDSAIG 131 (176)
Q Consensus 57 ~~~~~~Pil~-----Wl~~Y~~~~l~~D~iAGlTval~~IPq~mAyA~lAGlpP~~GLYsa~~~~liyalfGsS~~~~~G 131 (176)
.+.++.|.+. |+|+|+++++.+|++||+|+|+++|||+||||.+||+||+|||||+++|+++|++||+|||+++|
T Consensus 5 ~~~~~~~~~~~~~~~wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~G 84 (568)
T PRK11660 5 HLFSVRPFSALIDACWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSG 84 (568)
T ss_pred hhHhhHhhhhHHHHHHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccC
Confidence 3555666666 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6799 132 PTAIMSILTRENLHGLGPQFAVFLTFVSGIVQLFMGLLQLALIT 175 (176)
Q Consensus 132 p~a~~sll~~~~v~~~~~~~~~~lt~l~Gviql~~gllrLG~l~ 175 (176)
|++.++++++..+++.+.+.+..+++++|++|+++|++|+|+++
T Consensus 85 p~a~~~~~~~~~~~~~~~~~~~~~~~l~Gii~~l~gllrlG~l~ 128 (568)
T PRK11660 85 PTAAFVVILYPVSQQFGLAGLLVATLMSGIILILMGLARLGRLI 128 (568)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998888888888888999999999999999999874
No 4
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.96 E-value=1e-30 Score=242.36 Aligned_cols=113 Identities=46% Similarity=0.889 Sum_probs=107.1
Q ss_pred cccCcCCCCChhhhhHHHHHHHHHHHhhhchhhHHHHHhCCCcchhhhhhhhhhhhhhhcCCCCccccchhHHHHHHHHH
Q psy6799 63 PILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYTIFGSCKDSAIGPTAIMSILTRE 142 (176)
Q Consensus 63 Pil~Wl~~Y~~~~l~~D~iAGlTval~~IPq~mAyA~lAGlpP~~GLYsa~~~~liyalfGsS~~~~~Gp~a~~sll~~~ 142 (176)
|+++|+++|+++++++|++||+|+++++|||+||||.+||+||++|||++++++++|++||+|||+++||++++|+++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccc---------HHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6799 143 NLHGLG---------PQFAVFLTFVSGIVQLFMGLLQLALIT 175 (176)
Q Consensus 143 ~v~~~~---------~~~~~~lt~l~Gviql~~gllrLG~l~ 175 (176)
++.+.+ .+.+.++++++|++|+++|++|+|+++
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~ 122 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLI 122 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 987632 356779999999999999999999874
No 5
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.2e-29 Score=236.22 Aligned_cols=119 Identities=34% Similarity=0.686 Sum_probs=115.9
Q ss_pred HHhhhccccCcCCCCChhhhhHHHHHHHHHHHhhhchhhHHHHHhCCCcchhhhhhhhhhhhhhhcCCCCccccchhHHH
Q psy6799 57 MLHKKVPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYTIFGSCKDSAIGPTAIM 136 (176)
Q Consensus 57 ~~~~~~Pil~Wl~~Y~~~~l~~D~iAGlTval~~IPq~mAyA~lAGlpP~~GLYsa~~~~liyalfGsS~~~~~Gp~a~~ 136 (176)
++.+++|..+|.+.|+++|+++|++||+|||++++||+||||.+||+||++|||++++++++|++||+||++++||++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~ 81 (554)
T COG0659 2 RLRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAF 81 (554)
T ss_pred cchhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh---cccHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy6799 137 SILTRENLH---GLGPQFAVFLTFVSGIVQLFMGLLQLALIT 175 (176)
Q Consensus 137 sll~~~~v~---~~~~~~~~~lt~l~Gviql~~gllrLG~l~ 175 (176)
+++++..+. +++.+++.++++++|++|+++|++|||+++
T Consensus 82 ~~v~a~~i~~~~~~g~~~~~~~tllaGv~~i~~G~lRLG~li 123 (554)
T COG0659 82 AVVLAAVIASLVETGLALAFLATLLAGVFQILLGLLRLGRLI 123 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999 899999999999999999999999999985
No 6
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=93.88 E-value=0.23 Score=44.76 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=64.6
Q ss_pred HHHhhhchhhHHHHHhCCCc-------chhhhhhhhhhhhhh----hcCCCCccccchhHHHHHHHHHHhhcccHHHHHH
Q psy6799 86 VGLTVIPQAIAYSNVAGLPP-------QVGLYSSFMACFVYT----IFGSCKDSAIGPTAIMSILTRENLHGLGPQFAVF 154 (176)
Q Consensus 86 val~~IPq~mAyA~lAGlpP-------~~GLYsa~~~~liya----lfGsS~~~~~Gp~a~~sll~~~~v~~~~~~~~~~ 154 (176)
.+.+.+|.-++-+ .|+|+ +.-+.++.+++++.. .+|+..-+..||+......+.....+++.+.+..
T Consensus 10 ~~~i~~p~i~~~a--~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~~~~~~~~g 87 (406)
T TIGR03173 10 AGAVAVPLIVGGA--LGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAGGGLGAIFG 87 (406)
T ss_pred HHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhhhhHHHHHH
Confidence 3456666665543 68888 678888888999986 6788988999998755443433445578899999
Q ss_pred HHHHHHHHHHHHHHHhcccc
Q psy6799 155 LTFVSGIVQLFMGLLQLALI 174 (176)
Q Consensus 155 lt~l~Gviql~~gllrLG~l 174 (176)
..+++|++++++|. +++++
T Consensus 88 a~~v~Gii~illg~-~~~~l 106 (406)
T TIGR03173 88 AVIVAGLFVILLAP-FFSKL 106 (406)
T ss_pred HHHHHHHHHHHHHH-HHHHH
Confidence 99999999999994 55554
No 7
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=93.23 E-value=0.82 Score=42.00 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHHHhhhchhhHHHHHhCCCcchhhhhhhhhhhhhh-hcCCCCccccchhHHHHHHHHHHh--hc----c
Q psy6799 75 SAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYT-IFGSCKDSAIGPTAIMSILTRENL--HG----L 147 (176)
Q Consensus 75 ~l~~D~iAGlTval~~IPq~mAyA~lAGlpP~~GLYsa~~~~liya-lfGsS~~~~~Gp~a~~sll~~~~v--~~----~ 147 (176)
.+...++.|+.--+.+.--.++...+-|+++..-+.++-++.++.. .+|+.--+..|++......+.... .. .
T Consensus 28 p~~~~~~~GlQh~lam~~~~v~~Plilgl~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~~~~~~~~~~ 107 (429)
T TIGR03616 28 PAAQTIVMGLQHAVAMFGATVLMPLLMGFDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAATGYNGQGTNP 107 (429)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHHhhcccCCcc
Confidence 3567888898865555444444444457999999999999999997 577777778888665433222211 11 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6799 148 GPQFAVFLTFVSGIVQLFMGLLQLA 172 (176)
Q Consensus 148 ~~~~~~~lt~l~Gviql~~gllrLG 172 (176)
+.+.+...++++|++++++|+++++
T Consensus 108 ~~~~a~ga~iv~G~i~~llg~~~~~ 132 (429)
T TIGR03616 108 NIALALGGIIACGLVYAAIGLVVMR 132 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999998764
No 8
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=92.74 E-value=0.39 Score=48.36 Aligned_cols=94 Identities=11% Similarity=0.147 Sum_probs=69.1
Q ss_pred HHHHHHHHhhhchhhHHHHHhC------CCcchhhhhhhhhhhhhhhcCCCCccccchhHHHHHHHHH---HhhcccH--
Q psy6799 81 VAGVTVGLTVIPQAIAYSNVAG------LPPQVGLYSSFMACFVYTIFGSCKDSAIGPTAIMSILTRE---NLHGLGP-- 149 (176)
Q Consensus 81 iAGlTval~~IPq~mAyA~lAG------lpP~~GLYsa~~~~liyalfGsS~~~~~Gp~a~~sll~~~---~v~~~~~-- 149 (176)
-|=+-+-..++.-++||+.+.+ +...=-|.|+.+++++|++||+-+..++|+|+-+++.... ..++.+.
T Consensus 373 aa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~~~~~y 452 (900)
T TIGR00834 373 AAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCESNGLEY 452 (900)
T ss_pred HHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhhcCCch
Confidence 3344455667778899986654 4556678999999999999999999999988877765543 4444444
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcccc
Q psy6799 150 -QFAVFLTFVSGIVQLFMGLLQLALI 174 (176)
Q Consensus 150 -~~~~~lt~l~Gviql~~gllrLG~l 174 (176)
.+..++.+-+.++.++++.+...++
T Consensus 453 l~~~~WigiW~~~~~~lla~~~~s~l 478 (900)
T TIGR00834 453 LVGRVWIGLWLVLLVLLLVATEGSFL 478 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4456777778888888888877655
No 9
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=83.51 E-value=0.77 Score=43.51 Aligned_cols=93 Identities=13% Similarity=0.293 Sum_probs=28.3
Q ss_pred HHHHHHhhhchhhHHHHHhC------CCcchhhhhhhhhhhhhhhcCCCCccccchhHHHHHHHHH---HhhcccHHH--
Q psy6799 83 GVTVGLTVIPQAIAYSNVAG------LPPQVGLYSSFMACFVYTIFGSCKDSAIGPTAIMSILTRE---NLHGLGPQF-- 151 (176)
Q Consensus 83 GlTval~~IPq~mAyA~lAG------lpP~~GLYsa~~~~liyalfGsS~~~~~Gp~a~~sll~~~---~v~~~~~~~-- 151 (176)
=+-+-..++.-+++|+.+-+ +...--|.++.+.+++|++||+.+..++|+|+-+.+.... ..++.+.++
T Consensus 39 ~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~~~~~~~~~fl~ 118 (510)
T PF00955_consen 39 TLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYKFCKSYGLDFLP 118 (510)
T ss_dssp HHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC---------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33455566777888886554 3455567788999999999999999999999887765533 334455443
Q ss_pred -HHHHHHHHHHHHHHHHHHhccccc
Q psy6799 152 -AVFLTFVSGIVQLFMGLLQLALIT 175 (176)
Q Consensus 152 -~~~lt~l~Gviql~~gllrLG~l~ 175 (176)
-.++.+-++++.+++..+..++++
T Consensus 119 ~~~wig~w~~~~~~~~~~~~~s~lv 143 (510)
T PF00955_consen 119 FRAWIGIWTAIFLLVLAAFNASFLV 143 (510)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 456777778888888887777654
No 10
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=82.94 E-value=9 Score=35.88 Aligned_cols=96 Identities=20% Similarity=0.329 Sum_probs=64.2
Q ss_pred hhhhhHHHHHHHHHHHhhh------chhhHHHHHhCCCcchhhh----hhhhhhhhhhhcCCCCccccchhHHHHHHHHH
Q psy6799 73 SESAVSDLVAGVTVGLTVI------PQAIAYSNVAGLPPQVGLY----SSFMACFVYTIFGSCKDSAIGPTAIMSILTRE 142 (176)
Q Consensus 73 ~~~l~~D~iAGlTval~~I------Pq~mAyA~lAGlpP~~GLY----sa~~~~liyalfGsS~~~~~Gp~a~~sll~~~ 142 (176)
..+.+.+++||+|.-+.+. |+-++ -||.|...-.+ ++.++++.-+++...|.-.-=.-+.-+.....
T Consensus 16 ~t~vrtEiiAGlTTFltM~YIl~VnP~IL~---~ag~~~~av~~AT~l~a~~gs~~mgl~An~P~alapgmglnAfFaft 92 (436)
T COG2252 16 GTTVRTEVIAGLTTFLTMAYIVFVNPQILG---AAGMPVGAVFVATCLAAAIGSIAMGLYANLPIALAPGMGLNAFFAFT 92 (436)
T ss_pred CchHHHHHHHHHHHHHHHHHhheecHHHHH---hcCCCchhHHHHHHHHHHHHHHHHHHHHcCchhhcchhhHHHHHHHH
Confidence 6788999999999887554 44444 34566333332 34556666777766554333233444555556
Q ss_pred Hhhcc--cHHHHHHHHHHHHHHHHHHHHHhc
Q psy6799 143 NLHGL--GPQFAVFLTFVSGIVQLFMGLLQL 171 (176)
Q Consensus 143 ~v~~~--~~~~~~~lt~l~Gviql~~gllrL 171 (176)
++... .++.+....|++|++.+++.+.++
T Consensus 93 vv~~~gi~wq~AL~aVF~sGiif~ils~t~i 123 (436)
T COG2252 93 VVLGMGLSWQVALGAVFLSGIIFLLLSLTGI 123 (436)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHhH
Confidence 66554 589999999999999999988775
No 11
>KOG1172|consensus
Probab=81.86 E-value=2.6 Score=42.36 Aligned_cols=83 Identities=13% Similarity=0.299 Sum_probs=60.7
Q ss_pred hhhHHHHHhC------CCcchhhhhhhhhhhhhhhcCCCCccccchhHHHHHHHH---HHhhcccH---HHHHHHHHHHH
Q psy6799 93 QAIAYSNVAG------LPPQVGLYSSFMACFVYTIFGSCKDSAIGPTAIMSILTR---ENLHGLGP---QFAVFLTFVSG 160 (176)
Q Consensus 93 q~mAyA~lAG------lpP~~GLYsa~~~~liyalfGsS~~~~~Gp~a~~sll~~---~~v~~~~~---~~~~~lt~l~G 160 (176)
-+++|+.+-| +..+=-|.+..+++++|++||+-+..++|+|+-+.++.. ....+.+. ++..++.+-+.
T Consensus 376 P~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~dyl~~r~wVglW~~ 455 (876)
T KOG1172|consen 376 PAITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGLDYLAFRAWVGLWTA 455 (876)
T ss_pred hHhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCCchhhHHHHHHHHHH
Confidence 4677876544 344556788899999999999999999988877766543 44455554 44567777788
Q ss_pred HHHHHHHHHhccccc
Q psy6799 161 IVQLFMGLLQLALIT 175 (176)
Q Consensus 161 viql~~gllrLG~l~ 175 (176)
++.+++..+....++
T Consensus 456 ~l~illaa~~as~lv 470 (876)
T KOG1172|consen 456 FLLILLAATNASSLV 470 (876)
T ss_pred HHHHHHHHhhhhHHH
Confidence 888888888776653
No 12
>PRK10720 uracil transporter; Provisional
Probab=81.45 E-value=6.9 Score=35.93 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=54.7
Q ss_pred HHhhhchhhHHHHHhCCCcchhhhhhhhhhhhhhhcCCCCc-cccchh-HHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Q psy6799 87 GLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYTIFGSCKD-SAIGPT-AIMSILTRENLHGLGPQFAVFLTFVSGIVQL 164 (176)
Q Consensus 87 al~~IPq~mAyA~lAGlpP~~GLYsa~~~~liyalfGsS~~-~~~Gp~-a~~sll~~~~v~~~~~~~~~~lt~l~Gviql 164 (176)
+.+.+|.-+ |+++...+..+-++.++..+++++|. +..||+ +.++.+..-. ..+.+.+....+++|++++
T Consensus 30 ~~i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~--~~~~~~~lgav~v~Glv~i 101 (428)
T PRK10720 30 ATVLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--PLGYEVALGGFIMCGVLFC 101 (428)
T ss_pred HHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHH--HccHHHHHHHHHHHHHHHH
Confidence 555666633 78888899999999999998886555 445764 3333333221 2478889999999999999
Q ss_pred HHHHH
Q psy6799 165 FMGLL 169 (176)
Q Consensus 165 ~~gll 169 (176)
+++++
T Consensus 102 lls~~ 106 (428)
T PRK10720 102 LVALI 106 (428)
T ss_pred HHHHH
Confidence 99997
No 13
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=77.84 E-value=22 Score=30.56 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=42.2
Q ss_pred hhhhhHHHHHHHHHHHhhhchhhHHHHHhCCCcchhhhhhhhhhhhhhhcCCCCcccc
Q psy6799 73 SESAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYTIFGSCKDSAI 130 (176)
Q Consensus 73 ~~~l~~D~iAGlTval~~IPq~mAyA~lAGlpP~~GLYsa~~~~liyalfGsS~~~~~ 130 (176)
++.+++.+.+++.+.+=.+|-|++|+.+|.-.=..=+++.++..+||+ |+|..+.+
T Consensus 9 ~~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~~e~~lmS~~iyA--GasQfv~i 64 (238)
T COG1296 9 RAEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSPLEAILMSLLIYA--GASQFVAI 64 (238)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHc--cHHHHHHH
Confidence 578999999999999999999999998873333334567777788887 45444433
No 14
>PF06686 SpoIIIAC: Stage III sporulation protein AC/AD protein family
Probab=69.85 E-value=12 Score=24.82 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHHHHHhccc
Q psy6799 133 TAIMSILTRENLHGLG-PQFAVFLTFVSGIVQLFMGLLQLAL 173 (176)
Q Consensus 133 ~a~~sll~~~~v~~~~-~~~~~~lt~l~Gviql~~gllrLG~ 173 (176)
-+.++.+.+...++.+ ++++..+++.+|++.+.+.+=++..
T Consensus 8 igii~~~l~~vlk~~~~~e~a~~isla~~i~I~~~~~~~i~~ 49 (58)
T PF06686_consen 8 IGIIAAFLALVLKQAGEPEYASLISLAGGILIFLLVLPKISS 49 (58)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888 9999999999999999887766544
No 15
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=68.56 E-value=20 Score=32.08 Aligned_cols=92 Identities=24% Similarity=0.300 Sum_probs=52.4
Q ss_pred HHHHHHHHHHH------hhhchhhHHHHHhCC--C----cchhhhhhhhhhhhhhh-cCCCCccccchhHHHHHHHHHHh
Q psy6799 78 SDLVAGVTVGL------TVIPQAIAYSNVAGL--P----PQVGLYSSFMACFVYTI-FGSCKDSAIGPTAIMSILTRENL 144 (176)
Q Consensus 78 ~D~iAGlTval------~~IPq~mAyA~lAGl--p----P~~GLYsa~~~~liyal-fGsS~~~~~Gp~a~~sll~~~~v 144 (176)
+.+++|++--+ +.+|.-++-+ .|+ + .+.-+..+.++.++.++ +|..--+.-||....-.....+.
T Consensus 2 ~~i~~glQ~~l~m~~~~iv~P~il~~~--~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~ 79 (389)
T PF00860_consen 2 KEILLGLQHFLAMFYIIIVVPLILAAA--FGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVI 79 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS-------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHhhc--ccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccc
Confidence 45667776544 3455555555 221 1 35566777888899999 77666677787544222111121
Q ss_pred h-----cccHHHHHHHHHHHHHHHHHHHHHhc
Q psy6799 145 H-----GLGPQFAVFLTFVSGIVQLFMGLLQL 171 (176)
Q Consensus 145 ~-----~~~~~~~~~lt~l~Gviql~~gllrL 171 (176)
. +.+.+.+....+++|++++++++.++
T Consensus 80 g~~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~ 111 (389)
T PF00860_consen 80 GMAESGGYGLQAALGAVLISGILFILLGLTGL 111 (389)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred ccccchhhchhhhhhHHHHHHHHHHHHHHhch
Confidence 2 24567788888999999999998776
No 16
>PHA00736 hypothetical protein
Probab=49.16 E-value=76 Score=22.63 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=48.7
Q ss_pred hhhHHHHHhCCCcchhhhhh-hhhhhhhhhcCCCCccccchhHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Q psy6799 93 QAIAYSNVAGLPPQVGLYSS-FMACFVYTIFGSCKDSAIGPTAIMSILTRENLHGLGPQFAVFLTFVSGIV 162 (176)
Q Consensus 93 q~mAyA~lAGlpP~~GLYsa-~~~~liyalfGsS~~~~~Gp~a~~sll~~~~v~~~~~~~~~~lt~l~Gvi 162 (176)
.+++.|+-.|+.|+.+..-- .+-++.|-.-|.-+.+.+|-.+..+++.-..+-- =+..+....+++|++
T Consensus 3 daislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfmdflpl-fwgi~vifgliag~v 72 (79)
T PHA00736 3 DAISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFMDFLPL-FWGITVIFGLIAGLV 72 (79)
T ss_pred hHHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 46788899999999987644 4567899999999999999988888877554431 112333444455543
No 17
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=46.77 E-value=89 Score=27.41 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=33.3
Q ss_pred HHHHhhhchhhHHHHHhC---CCcchhhhhhhhhhhhhhhcCCC
Q psy6799 85 TVGLTVIPQAIAYSNVAG---LPPQVGLYSSFMACFVYTIFGSC 125 (176)
Q Consensus 85 Tval~~IPq~mAyA~lAG---lpP~~GLYsa~~~~liyalfGsS 125 (176)
...++-+|.++..|.++| +=|..|=..+++|..+++++-+.
T Consensus 226 gl~ilgvp~alllgil~g~~~lIP~iG~~i~~ip~~i~al~~~~ 269 (355)
T COG0628 226 GLLILGVPYALLLGLLAGLLSLIPYIGPVIGLIPAVIIALLQGG 269 (355)
T ss_pred HHHHHcccHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhcc
Confidence 344456799999997665 67999999999999999998765
No 18
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=41.82 E-value=2.7e+02 Score=25.28 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=55.2
Q ss_pred HHHhhhchhhHHHHHhCCCc-------chhhhhhhhhhhhhhhcCCCC---ccccchh-HHHHHHHHHHhhcccHHHHHH
Q psy6799 86 VGLTVIPQAIAYSNVAGLPP-------QVGLYSSFMACFVYTIFGSCK---DSAIGPT-AIMSILTRENLHGLGPQFAVF 154 (176)
Q Consensus 86 val~~IPq~mAyA~lAGlpP-------~~GLYsa~~~~liyalfGsS~---~~~~Gp~-a~~sll~~~~v~~~~~~~~~~ 154 (176)
.+.+.+|.-++-+. +++ +..+..+.++.++.++++..+ -...|+. +.++.++... .+++.+.+..
T Consensus 20 ~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~-~~~~~~~~~g 95 (415)
T TIGR00801 20 GGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIG-SGLGIPAIMG 95 (415)
T ss_pred HHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHH-hccCHHHHHH
Confidence 45666676666554 233 456777888888888877666 4556776 6655544332 3357888888
Q ss_pred HHHHHHHHHHHHHHH
Q psy6799 155 LTFVSGIVQLFMGLL 169 (176)
Q Consensus 155 lt~l~Gviql~~gll 169 (176)
..+.+|++++++++.
T Consensus 96 ~~i~~gl~~~ll~~~ 110 (415)
T TIGR00801 96 ALIATGLVYTLLSLL 110 (415)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998874
No 19
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=35.89 E-value=1.9e+02 Score=27.38 Aligned_cols=113 Identities=24% Similarity=0.350 Sum_probs=56.3
Q ss_pred hHHHHhhhccccCcCCCCC--hhhhhHHHHHHHHHHHhhhch--hhHHHHHhCCCcchhh----hhhhhhhhhhhhcCCC
Q psy6799 54 TKKMLHKKVPILQWLPEYN--SESAVSDLVAGVTVGLTVIPQ--AIAYSNVAGLPPQVGL----YSSFMACFVYTIFGSC 125 (176)
Q Consensus 54 ~~~~~~~~~Pil~Wl~~Y~--~~~l~~D~iAGlTval~~IPq--~mAyA~lAGlpP~~GL----Ysa~~~~liyalfGsS 125 (176)
..|+++--+|.- .|+ ++|+..-+ || |.|-+.+=- +.+||.=-|++|.+-+ |--.++++.+.++-+.
T Consensus 42 ~pkRw~~nLP~r----D~rfE~ED~vPAl-Ag-tIGkivMvsAv~aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sg 115 (492)
T PF11840_consen 42 SPKRWRLNLPFR----DYRFEWEDLVPAL-AG-TIGKIVMVSAVAAAFAAPLGLSPEFVIENVRYELLIAALLFVILFSG 115 (492)
T ss_pred CcccccCCCCCc----ccccchHHhhHHH-Hh-hhhHHHHHHHHHHHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHh
Confidence 334455556643 444 56666554 33 223332223 4455554467766543 2223344322222222
Q ss_pred C----ccccchhHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy6799 126 K----DSAIGPTAIMSILTRENLHGLGPQFAVFLTFVSGIVQLFMGLLQLALI 174 (176)
Q Consensus 126 ~----~~~~Gp~a~~sll~~~~v~~~~~~~~~~lt~l~Gviql~~gllrLG~l 174 (176)
- .---|.-+-+-.++..++..++-. .++.+++|++=+++++.|.|..
T Consensus 116 fl~P~anLAGthgPmIpLIp~ivaaGgHP--Lalgilvg~fGlil~~~kggS~ 166 (492)
T PF11840_consen 116 FLNPRANLAGTHGPMIPLIPLIVAAGGHP--LALGILVGVFGLILSIFKGGSK 166 (492)
T ss_pred ccCccccccCCCCCcchhhHHHHHcCCCc--HHHHHHHHHHHHHHHHhcchhH
Confidence 1 112244444455555555433322 3467789999999999988754
No 20
>PRK10692 hypothetical protein; Provisional
Probab=31.72 E-value=1.1e+02 Score=22.82 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=29.0
Q ss_pred hhhhhHHHHHHHHHHHhhhchhhHHHHHhCCC----cchhhhhhhhhhhhhh
Q psy6799 73 SESAVSDLVAGVTVGLTVIPQAIAYSNVAGLP----PQVGLYSSFMACFVYT 120 (176)
Q Consensus 73 ~~~l~~D~iAGlTval~~IPq~mAyA~lAGlp----P~~GLYsa~~~~liya 120 (176)
...+.++++-|+-..+|.. +++|.+++.+| |++=-+.++++-+|-|
T Consensus 5 ~a~~~GN~lMglGmv~Mv~--gigysi~~~i~~L~Lp~~~~~gal~~IFiGA 54 (92)
T PRK10692 5 NASLLGNVLMGLGLVVMVV--GVGYSILNQLPQLNLPQFFAHGALLSIFVGA 54 (92)
T ss_pred hhHHHhhHHHHHHHHHHHH--HHHHHHHHhcccCCchHHHHhhHHHHHHHHH
Confidence 4457788887776555554 99999999886 3443344444444433
No 21
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=31.40 E-value=52 Score=28.89 Aligned_cols=22 Identities=23% Similarity=0.700 Sum_probs=12.6
Q ss_pred hCCCcchhhhhhhhhhhhhhhc
Q psy6799 101 AGLPPQVGLYSSFMACFVYTIF 122 (176)
Q Consensus 101 AGlpP~~GLYsa~~~~liyalf 122 (176)
+|=||.||||.++-+.+-|++.
T Consensus 52 SGEP~aygl~~ai~g~iA~~lm 73 (269)
T PF04206_consen 52 SGEPPAYGLWCAIAGAIAWALM 73 (269)
T ss_pred cCCCchhhHHHHHHHHHHHHHH
Confidence 4556666666665555555554
No 22
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=30.01 E-value=1.7e+02 Score=24.80 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=34.1
Q ss_pred HHHHHHHhhhchhhHHHHHhC---CCcchhhhhhhhhhhhhhhcCCCC
Q psy6799 82 AGVTVGLTVIPQAIAYSNVAG---LPPQVGLYSSFMACFVYTIFGSCK 126 (176)
Q Consensus 82 AGlTval~~IPq~mAyA~lAG---lpP~~GLYsa~~~~liyalfGsS~ 126 (176)
+++...++-+|.++..|.++| +=|..|-..+.+|..+++++.++.
T Consensus 223 ~~i~~~~~gvp~a~~~~~l~~~~~~IP~vG~~i~~ip~~~~~~~~~~~ 270 (341)
T TIGR02872 223 VLIGLLIIGVDYALTLALIIGIVDILPILGPGAVLVPWALYLFITGNY 270 (341)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHcCCH
Confidence 345566677899999887665 578889888999999888775444
No 23
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=29.34 E-value=3.6e+02 Score=24.28 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=27.9
Q ss_pred cCcCC-----CCC-hhhhhHHHHHHHHHHHhhhchhhHHHH
Q psy6799 65 LQWLP-----EYN-SESAVSDLVAGVTVGLTVIPQAIAYSN 99 (176)
Q Consensus 65 l~Wl~-----~Y~-~~~l~~D~iAGlTval~~IPq~mAyA~ 99 (176)
-+|=| +|. +.-+.+-++.-+.-.++++|-+++.|.
T Consensus 64 ~~W~p~~~~~~~G~l~~i~GTli~s~iA~liAvP~gi~~Ai 104 (310)
T COG0573 64 TEWNPTNAQPQYGALPPIAGTLITSLIALLIAVPVGIGTAI 104 (310)
T ss_pred CccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45777 355 666788888888889999999999995
No 24
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=26.03 E-value=2.8e+02 Score=23.45 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=32.8
Q ss_pred HHHHHHHhhhchhhHHHHHh---CCCcchhhhhhhhhhhhhhhcCCC
Q psy6799 82 AGVTVGLTVIPQAIAYSNVA---GLPPQVGLYSSFMACFVYTIFGSC 125 (176)
Q Consensus 82 AGlTval~~IPq~mAyA~lA---GlpP~~GLYsa~~~~liyalfGsS 125 (176)
.++...++-+|.++-.|.++ ++=|..|-.-+.+|..+|++..+.
T Consensus 209 ~~i~~~~~gi~~~~l~~~l~~i~~~IP~iG~~i~~ip~~i~~~~~~~ 255 (327)
T PF01594_consen 209 TFIGFSIFGIPYALLLGVLAFILSFIPYIGPIIVLIPAAIYALLQGG 255 (327)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHh
Confidence 34445566779998888665 457888999999998888876665
No 25
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=25.81 E-value=3.5e+02 Score=25.11 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=52.3
Q ss_pred HHHHhhhchhhHHHHHhCCCcc-------hhhhhhhhhhhhhhhcCCCCccccchhHHH-HHHHHHHh--hccc--HHHH
Q psy6799 85 TVGLTVIPQAIAYSNVAGLPPQ-------VGLYSSFMACFVYTIFGSCKDSAIGPTAIM-SILTRENL--HGLG--PQFA 152 (176)
Q Consensus 85 Tval~~IPq~mAyA~lAGlpP~-------~GLYsa~~~~liyalfGsS~~~~~Gp~a~~-sll~~~~v--~~~~--~~~~ 152 (176)
..+.+.+|.-++=| .|++|. .-+..+-++.++=+.||+.--+.-||+... ..+..-.. ...| .+..
T Consensus 22 ~~~~i~vPliva~a--~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~~~~g~~~~~~ 99 (433)
T PRK11412 22 FCNTVVVPPTLLSA--FQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDI 99 (433)
T ss_pred HHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhcccccCccHHHH
Confidence 35567777666544 677773 466677778888888999888998987654 22222221 1123 2111
Q ss_pred ----HHHHHHHHHHHHHHHHHh
Q psy6799 153 ----VFLTFVSGIVQLFMGLLQ 170 (176)
Q Consensus 153 ----~~lt~l~Gviql~~gllr 170 (176)
....+++|++++++|+.+
T Consensus 100 ~g~l~g~~i~~g~~~~~lg~~~ 121 (433)
T PRK11412 100 ATSLAVGIALSGVVTILIGFSG 121 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 124677888888887765
No 26
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=24.91 E-value=1.5e+02 Score=23.55 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=16.8
Q ss_pred hhHHHHHhCCCcchhhhhhhhhhhhhhh
Q psy6799 94 AIAYSNVAGLPPQVGLYSSFMACFVYTI 121 (176)
Q Consensus 94 ~mAyA~lAGlpP~~GLYsa~~~~liyal 121 (176)
+.++|.+-|-.+.--+.+.+.+.+++.+
T Consensus 114 ~~~fa~lfgg~~~~~~~a~i~g~~~~~~ 141 (193)
T PF06738_consen 114 SAAFALLFGGSWIDMIVAFILGLLVGLL 141 (193)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655555443
No 27
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=24.10 E-value=1.8e+02 Score=21.64 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=27.4
Q ss_pred hhhhHHHHHHHHHHHhhhchhhHHHHHhCCC----cchhhhhhhhhhhhhh
Q psy6799 74 ESAVSDLVAGVTVGLTVIPQAIAYSNVAGLP----PQVGLYSSFMACFVYT 120 (176)
Q Consensus 74 ~~l~~D~iAGlTval~~IPq~mAyA~lAGlp----P~~GLYsa~~~~liya 120 (176)
..+.++++-|+-...|. -+++|++++.+| |++=-+.++++-+|-|
T Consensus 6 a~~~GN~lMglGmv~Mv--~gigysi~~~~~~L~Lp~~~~~gal~~IFiGA 54 (89)
T PF10762_consen 6 AFLLGNVLMGLGMVVMV--GGIGYSILSQIPQLGLPQFLAHGALFSIFIGA 54 (89)
T ss_pred hHHHhhHHHHHhHHHHH--HhHHHHHHHhcccCCCcHHHHhhHHHHHHHHH
Confidence 44667777776555554 499999999886 3443344444433333
No 28
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=22.36 E-value=2.7e+02 Score=19.49 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHh
Q psy6799 131 GPTAIMSILTRENLHGLGPQFAVFLTFVSGIVQLFMGLLQ 170 (176)
Q Consensus 131 Gp~a~~sll~~~~v~~~~~~~~~~lt~l~Gviql~~gllr 170 (176)
+..+++-.+..++..+.|-+--+.++-++|++..++-+.+
T Consensus 10 AgVGIlvavl~~vLk~sGkee~A~~~tLaG~iiVL~~Vi~ 49 (64)
T TIGR02848 10 AGVGILVAVIHTILKQSGKEEQAQMVTLAGIVVVLFMVIT 49 (64)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666677777666655666778998888776554
No 29
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.78 E-value=87 Score=27.49 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=26.7
Q ss_pred CCChhhhhHHHHHHHHHHHhhhchhhHHHHHhCCCcchhhhhhhhhhhhhhhc
Q psy6799 70 EYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYTIF 122 (176)
Q Consensus 70 ~Y~~~~l~~D~iAGlTval~~IPq~mAyA~lAGlpP~~GLYsa~~~~liyalf 122 (176)
+|.++....=++-|+.+.+..| +++.+...-.--.-|+|.+++..++.+++
T Consensus 192 ~faRkR~i~f~llgllfliiai--gltvGT~~~A~~~~giY~~wv~~~l~a~~ 242 (256)
T PF09788_consen 192 RFARKRAIIFFLLGLLFLIIAI--GLTVGTWTYAKTYGGIYVSWVGLFLIALI 242 (256)
T ss_pred hHhhhHHHHHHHHHHHHHHHHH--HHhhhhHHHHhhcCcEeHHHHHHHHHHHH
Confidence 3444444444444555444444 33333322222334888888888877765
No 30
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=20.64 E-value=1.1e+02 Score=27.12 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=11.2
Q ss_pred hCCCcchhhhhhhhhhhhhhhc
Q psy6799 101 AGLPPQVGLYSSFMACFVYTIF 122 (176)
Q Consensus 101 AGlpP~~GLYsa~~~~liyalf 122 (176)
+|=||.||||.++-+.+-|++.
T Consensus 59 SGEP~aygl~~ai~g~vA~~lm 80 (292)
T PRK00972 59 SGEPVAYGLWCAIAGAVAWALM 80 (292)
T ss_pred cCCCchhHHHHHHHHHHHHHHH
Confidence 3455555555555555555443
No 31
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=20.19 E-value=3.3e+02 Score=24.73 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhchhh----HHHHHhCCCc------chhhhhhhhhhhhhhhcCCCCccccch
Q psy6799 79 DLVAGVTVGLTVIPQAI----AYSNVAGLPP------QVGLYSSFMACFVYTIFGSCKDSAIGP 132 (176)
Q Consensus 79 D~iAGlTval~~IPq~m----AyA~lAGlpP------~~GLYsa~~~~liyalfGsS~~~~~Gp 132 (176)
.+..=+.++++.+=+++ +.+..+|-++ ..++.+--++.++-++||+.+..+...
T Consensus 235 ~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~se 298 (415)
T TIGR00801 235 AILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQ 298 (415)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhh
Confidence 44444556666666665 4456777633 379999999999999999988777654
No 32
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=20.11 E-value=5.3e+02 Score=23.94 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhchh----hHHHHHhCCCc------chhhhhhhhhhhhhhhcCCCCccccchhH
Q psy6799 80 LVAGVTVGLTVIPQA----IAYSNVAGLPP------QVGLYSSFMACFVYTIFGSCKDSAIGPTA 134 (176)
Q Consensus 80 ~iAGlTval~~IPq~----mAyA~lAGlpP------~~GLYsa~~~~liyalfGsS~~~~~Gp~a 134 (176)
++.-+.++++.+=+. .|.+.+.+-++ ..|+.+--++.++-++||+.+..+.+-..
T Consensus 242 il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNv 306 (433)
T PRK11412 242 ILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSI 306 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhh
Confidence 444445555544443 34456665532 45899999999999999999987765433
Done!