Query psy6799
Match_columns 176
No_of_seqs 159 out of 1210
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 18:39:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 97.2 0.0012 4E-08 59.2 9.2 96 75-172 13-112 (429)
2 1bts_A BAND 3 anion transport 46.0 10 0.00035 21.1 1.6 19 108-126 6-24 (26)
3 3qe7_A Uracil permease; uracil 32.7 84 0.0029 27.6 6.2 54 80-133 228-291 (429)
4 2l8s_A Integrin alpha-1; trans 22.3 73 0.0025 20.6 2.9 24 151-174 10-36 (54)
5 2knc_A Integrin alpha-IIB; tra 21.1 79 0.0027 20.4 2.9 25 150-174 12-39 (54)
6 2k1a_A Integrin alpha-IIB; sin 20.8 1.2E+02 0.004 18.5 3.5 25 150-174 10-37 (42)
7 2xq2_A Sodium/glucose cotransp 17.8 2.6E+02 0.0089 25.1 6.6 37 94-130 151-187 (593)
8 2ksf_A Sensor protein KDPD; me 17.5 2.4E+02 0.0082 19.8 5.2 34 95-130 42-75 (107)
9 4ayb_N DNA-directed RNA polyme 9.5 1.1E+02 0.0037 20.6 1.1 24 50-73 41-64 (66)
10 3dh4_A Sodium/glucose cotransp 8.2 3.3E+02 0.011 24.0 4.1 38 94-131 122-159 (530)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=97.24 E-value=0.0012 Score=59.19 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHHHhhhchhhHHHHHhCCCcchhhhhhhhhhhhhhhcCCCCccc-cchhHH-HHHHHHHHhhcccHHHH
Q psy6799 75 SAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYTIFGSCKDSA-IGPTAI-MSILTRENLHGLGPQFA 152 (176)
Q Consensus 75 ~l~~D~iAGlTval~~IPq~mAyA~lAGlpP~~GLYsa~~~~liyalfGsS~~~~-~Gp~a~-~sll~~~~v~~~~~~~~ 152 (176)
.+.+++++|++--+.+..-.++--.+-|+||..+|+++.++.++.++++.+|.-. .|++-. ++.+.. +.. ++.+.+
T Consensus 13 ~~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~-i~~-~g~~~~ 90 (429)
T 3qe7_A 13 PLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLL-LLP-LGYEVA 90 (429)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHH-HGG-GCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHH-HHh-cCHHHH
Confidence 4778999999876655544444444449999999999999999999998777644 676533 333332 223 789999
Q ss_pred HHHHHHHHHHHHHHHHH--hcc
Q psy6799 153 VFLTFVSGIVQLFMGLL--QLA 172 (176)
Q Consensus 153 ~~lt~l~Gviql~~gll--rLG 172 (176)
....+++|+++++++++ |+|
T Consensus 91 ~gavi~aGli~ill~~~~~~~g 112 (429)
T 3qe7_A 91 LGGFIMCGVLFCLVSFIVKKAG 112 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999998 776
No 2
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=46.04 E-value=10 Score=21.11 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=13.7
Q ss_pred hhhhhhhhhhhhhhcCCCC
Q psy6799 108 GLYSSFMACFVYTIFGSCK 126 (176)
Q Consensus 108 GLYsa~~~~liyalfGsS~ 126 (176)
.+.++.+.+++|++|++-|
T Consensus 6 ~i~s~ai~Gi~f~lf~gQP 24 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXX 24 (26)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4667788888888888765
No 3
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=32.72 E-value=84 Score=27.59 Aligned_cols=54 Identities=15% Similarity=0.327 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhchhh----HHHHHhCCC------cchhhhhhhhhhhhhhhcCCCCccccchh
Q psy6799 80 LVAGVTVGLTVIPQAI----AYSNVAGLP------PQVGLYSSFMACFVYTIFGSCKDSAIGPT 133 (176)
Q Consensus 80 ~iAGlTval~~IPq~m----AyA~lAGlp------P~~GLYsa~~~~liyalfGsS~~~~~Gp~ 133 (176)
++.=++++++..=|.+ |.+..+|-+ ..-++.+--++.++-++||+++..+.+-.
T Consensus 228 i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en 291 (429)
T 3qe7_A 228 ILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGEN 291 (429)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHh
Confidence 3444566666555554 445566643 24689999999999999999997776543
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=22.26 E-value=73 Score=20.61 Aligned_cols=24 Identities=17% Similarity=0.595 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHhcccc
Q psy6799 151 FAVFLTFVSGIVQLF---MGLLQLALI 174 (176)
Q Consensus 151 ~~~~lt~l~Gviql~---~gllrLG~l 174 (176)
....++.++|++++. +.+.|+||.
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFF 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 455666777777544 677777764
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.10 E-value=79 Score=20.37 Aligned_cols=25 Identities=12% Similarity=0.402 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHhcccc
Q psy6799 150 QFAVFLTFVSGIVQLF---MGLLQLALI 174 (176)
Q Consensus 150 ~~~~~lt~l~Gviql~---~gllrLG~l 174 (176)
-....++.+.|++++. +.+.|+||.
T Consensus 12 ~wiIi~svl~GLllL~li~~~LwK~GFF 39 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMWKVGFF 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4556677777877654 677777774
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=20.83 E-value=1.2e+02 Score=18.51 Aligned_cols=25 Identities=12% Similarity=0.402 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHhcccc
Q psy6799 150 QFAVFLTFVSGIVQLF---MGLLQLALI 174 (176)
Q Consensus 150 ~~~~~lt~l~Gviql~---~gllrLG~l 174 (176)
-....++.+.|++.+. +.+.|+||.
T Consensus 10 ~wiIi~s~l~GLllL~li~~~LwK~GFF 37 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMWKVGFF 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4566677788887655 677888875
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=17.77 E-value=2.6e+02 Score=25.07 Aligned_cols=37 Identities=19% Similarity=0.429 Sum_probs=28.3
Q ss_pred hhHHHHHhCCCcchhhhhhhhhhhhhhhcCCCCcccc
Q psy6799 94 AIAYSNVAGLPPQVGLYSSFMACFVYTIFGSCKDSAI 130 (176)
Q Consensus 94 ~mAyA~lAGlpP~~GLYsa~~~~liyalfGsS~~~~~ 130 (176)
+.++..+.|+|...++.-..+-.++|.++|+-|.++.
T Consensus 151 ~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~ 187 (593)
T 2xq2_A 151 GLALETILGIPLMYSILGLALFALVYSIYGGLSAVVW 187 (593)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTTC---CCH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4555678899999999888888899999999998754
No 8
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=17.46 E-value=2.4e+02 Score=19.77 Aligned_cols=34 Identities=9% Similarity=0.213 Sum_probs=18.6
Q ss_pred hHHHHHhCCCcchhhhhhhhhhhhhhhcCCCCcccc
Q psy6799 95 IAYSNVAGLPPQVGLYSSFMACFVYTIFGSCKDSAI 130 (176)
Q Consensus 95 mAyA~lAGlpP~~GLYsa~~~~liyalfGsS~~~~~ 130 (176)
+.-|...|.-| |+.+++++.+.+-+|=+.|..+.
T Consensus 42 v~~A~~~g~~p--a~~aa~ls~l~~nffF~~P~~sf 75 (107)
T 2ksf_A 42 VVVALFYGRWP--SVVATVINVVSFDLFFIAPRGTL 75 (107)
T ss_dssp HHHHHHHSSCC--CSHHHHHHHHHHHHTTSCSSCTT
T ss_pred HHHHHHhCcHH--HHHHHHHHHHHHHHhhcCCCccc
Confidence 33444555555 66666666666655555555443
No 9
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=9.46 E-value=1.1e+02 Score=20.58 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=20.8
Q ss_pred HHHhhHHHHhhhccccCcCCCCCh
Q psy6799 50 RKVFTKKMLHKKVPILQWLPEYNS 73 (176)
Q Consensus 50 ~~~~~~~~~~~~~Pil~Wl~~Y~~ 73 (176)
++-|.++.+...+.+++++-+|++
T Consensus 41 ~ryCCRRm~LtHVdlid~ll~y~~ 64 (66)
T 4ayb_N 41 KRYCCRRMLLSHIDIISEVIHYTR 64 (66)
T ss_dssp CSSHHHHHHHTCCCCTTTTSTTCC
T ss_pred ceechhhhHHHHHHHHHHHHccCC
Confidence 455788999999999999999984
No 10
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=8.20 E-value=3.3e+02 Score=23.97 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=26.6
Q ss_pred hhHHHHHhCCCcchhhhhhhhhhhhhhhcCCCCccccc
Q psy6799 94 AIAYSNVAGLPPQVGLYSSFMACFVYTIFGSCKDSAIG 131 (176)
Q Consensus 94 ~mAyA~lAGlpP~~GLYsa~~~~liyalfGsS~~~~~G 131 (176)
+..+..+.|+|...++.-..+-.++|.++|+=+.++.-
T Consensus 122 ~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~T 159 (530)
T 3dh4_A 122 GLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWT 159 (530)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTC------CCSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34556788999999999999999999999999987753
Done!