Query psy6799
Match_columns 176
No_of_seqs 159 out of 1210
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 18:39:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6799.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6799hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5c_ f.23.29.1 (C:) Sec-bet 12.0 61 0.0044 17.1 1.9 24 75-98 7-30 (32)
2 d1y9ia_ a.195.1.1 (A:) Low tem 10.4 49 0.0035 24.0 1.5 27 63-89 121-150 (159)
3 d1tlqa_ a.195.1.1 (A:) Hypothe 9.6 54 0.0039 23.8 1.5 26 64-89 123-150 (161)
4 d1rfza_ a.195.1.1 (A:) YutG ho 7.1 63 0.0046 23.5 0.9 26 64-89 129-157 (164)
5 d3brda2 b.2.5.8 (A:197-380) DN 6.2 73 0.0053 23.5 0.8 10 4-13 29-38 (184)
6 d1vpda1 a.100.1.1 (A:164-296) 5.9 2.5E+02 0.018 18.1 3.6 31 75-107 9-39 (133)
7 d1wpga4 f.33.1.1 (A:1-124,A:24 5.3 1.3E+02 0.0094 24.0 1.9 24 74-97 175-198 (472)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 5.0 1.4E+02 0.01 15.4 1.3 16 109-124 9-24 (30)
9 d2ax3a1 c.72.1.4 (A:212-489) H 4.9 1.4E+02 0.01 22.2 1.9 16 75-90 216-231 (278)
10 d1kyha_ c.72.1.4 (A:) Hypothet 4.4 1.7E+02 0.012 21.9 1.9 16 76-91 212-227 (275)
No 1
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=11.96 E-value=61 Score=17.08 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHhhhchhhHHH
Q psy6799 75 SAVSDLVAGVTVGLTVIPQAIAYS 98 (176)
Q Consensus 75 ~l~~D~iAGlTval~~IPq~mAyA 98 (176)
....+-+-|+||+.+.|-.-+.|+
T Consensus 7 rvkpehvigvtvafviieailtyg 30 (32)
T d1rh5c_ 7 RVKPEHVIGVTVAFVIIEAILTYG 30 (32)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeccceEEEEEEehhhHHHHHhhc
Confidence 344667789999999887666664
No 2
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=10.42 E-value=49 Score=24.00 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=19.5
Q ss_pred cccCcCC-CCC--hhhhhHHHHHHHHHHHh
Q psy6799 63 PILQWLP-EYN--SESAVSDLVAGVTVGLT 89 (176)
Q Consensus 63 Pil~Wl~-~Y~--~~~l~~D~iAGlTval~ 89 (176)
.+++|+. +.+ ..-+..|++||+..++.
T Consensus 121 g~i~~ld~~~~g~~gv~lDDivagi~Aa~~ 150 (159)
T d1y9ia_ 121 GILAKLNEHDGIAVHTFLDDIVGAIAAAAA 150 (159)
T ss_dssp THHHHTTCCCSSCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCccchHHHHHHHHHHHHH
Confidence 3466884 444 56899999999987754
No 3
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis [TaxId: 1423]}
Probab=9.57 E-value=54 Score=23.79 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=19.3
Q ss_pred ccCcCCCCC--hhhhhHHHHHHHHHHHh
Q psy6799 64 ILQWLPEYN--SESAVSDLVAGVTVGLT 89 (176)
Q Consensus 64 il~Wl~~Y~--~~~l~~D~iAGlTval~ 89 (176)
+++|+.+.+ ..-+..|++||+..++.
T Consensus 123 ~i~~ld~~~~g~gv~lDDivagi~A~~~ 150 (161)
T d1tlqa_ 123 IIKELDESPDGIHTFLDDIVAALAAAAA 150 (161)
T ss_dssp HHHHTSSSCSCCCTTHHHHHHHHHHHHH
T ss_pred hHHHHhhcCCCcceeHHHHHHHHHHHHH
Confidence 467777654 45699999999987653
No 4
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.11 E-value=63 Score=23.49 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=18.6
Q ss_pred ccCcCC-CCC--hhhhhHHHHHHHHHHHh
Q psy6799 64 ILQWLP-EYN--SESAVSDLVAGVTVGLT 89 (176)
Q Consensus 64 il~Wl~-~Y~--~~~l~~D~iAGlTval~ 89 (176)
+++|+. +.+ ..-+..|++||+..++.
T Consensus 129 ~i~~ld~~~~g~~gv~lDDivagi~Aaa~ 157 (164)
T d1rfza_ 129 ILQYLNDKSTGKCNTFLDDIVGAIAAAAS 157 (164)
T ss_dssp HHHHHHCSSSSCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeeehHHHHHHHHHHHHH
Confidence 455773 443 46799999999987654
No 5
>d3brda2 b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=6.16 E-value=73 Score=23.54 Aligned_cols=10 Identities=30% Similarity=0.321 Sum_probs=8.6
Q ss_pred cccCCCCCcc
Q psy6799 4 IVNGYHNPKL 13 (176)
Q Consensus 4 ~~~~~~~~~~ 13 (176)
.|..||+|||
T Consensus 29 AQKSYG~EKR 38 (184)
T d3brda2 29 AQKSYGNEKR 38 (184)
T ss_dssp EECBCTTCCC
T ss_pred hhhccccccc
Confidence 5789999996
No 6
>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}
Probab=5.92 E-value=2.5e+02 Score=18.11 Aligned_cols=31 Identities=13% Similarity=0.414 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHhhhchhhHHHHHhCCCcch
Q psy6799 75 SAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQV 107 (176)
Q Consensus 75 ~l~~D~iAGlTval~~IPq~mAyA~lAGlpP~~ 107 (176)
++..+++.+.++..+ =+++++|.-+|++|..
T Consensus 9 Kl~nN~l~~~~~~~~--aEal~la~~~Gid~~~ 39 (133)
T d1vpda1 9 KLANQVIVALNIAAM--SEALTLATKAGVNPDL 39 (133)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHcCCCHHH
Confidence 456677777766655 4899999999999865
No 7
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=5.28 E-value=1.3e+02 Score=24.04 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHhhhchhhHH
Q psy6799 74 ESAVSDLVAGVTVGLTVIPQAIAY 97 (176)
Q Consensus 74 ~~l~~D~iAGlTval~~IPq~mAy 97 (176)
+.....++.++++++.+||+|+--
T Consensus 175 ~~~~~~~~~ai~l~V~~iPEgLp~ 198 (472)
T d1wpga4 175 RGAIYYFKIAVALAVAAIPEGLPA 198 (472)
T ss_dssp SCGGGHHHHHHHHHHHHSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhHHH
Confidence 556677889999999999998643
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.00 E-value=1.4e+02 Score=15.38 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=10.1
Q ss_pred hhhhhhhhhhhhhcCC
Q psy6799 109 LYSSFMACFVYTIFGS 124 (176)
Q Consensus 109 LYsa~~~~liyalfGs 124 (176)
+++++++-+.+++|=.
T Consensus 9 ifac~i~lfffaiffr 24 (30)
T d2axtt1 9 IFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4566667677776644
No 9
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=4.90 E-value=1.4e+02 Score=22.21 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHhh
Q psy6799 75 SAVSDLVAGVTVGLTV 90 (176)
Q Consensus 75 ~l~~D~iAGlTval~~ 90 (176)
-=.+|++||+.-++++
T Consensus 216 ~GtGDvLaGiIaallA 231 (278)
T d2ax3a1 216 GGSGDVLTGMIAGFIA 231 (278)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHH
Confidence 3469999999999977
No 10
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]}
Probab=4.35 E-value=1.7e+02 Score=21.94 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHhhh
Q psy6799 76 AVSDLVAGVTVGLTVI 91 (176)
Q Consensus 76 l~~D~iAGlTval~~I 91 (176)
=.+|++||+..++++-
T Consensus 212 GsGDvLaGiIa~~lAq 227 (275)
T d1kyha_ 212 GTGDTLTGMILGMLCC 227 (275)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHc
Confidence 4699999999999873
Done!