RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6799
(176 letters)
>gnl|CDD|205965 pfam13792, Sulfate_tra_GLY, Sulfate transporter N-terminal domain
with GLY motif. This domain is found usually at the
N-terminus of sulfate-transporter proteins. It carries a
highly conserved GLY sequence motif, but the function of
the domain is not known.
Length = 83
Score = 122 bits (309), Expect = 6e-37
Identities = 40/79 (50%), Positives = 58/79 (73%)
Query: 62 VPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYTI 121
+PILQWLP+Y+ DL+AG+TV L +IPQ +AY+ +AGLPP GLY+SF+ +Y +
Sbjct: 1 LPILQWLPKYSRSWLKGDLIAGLTVALVLIPQGMAYALLAGLPPVYGLYASFVPPLIYAL 60
Query: 122 FGSCKDSAIGPTAIMSILT 140
FGS + ++GPTA +S+L
Sbjct: 61 FGSSRHLSVGPTAAISLLV 79
>gnl|CDD|162054 TIGR00815, sulP, high affinity sulphate transporter 1. The SulP
family is a large and ubiquitous family with over 30
sequenced members derived from bacteria, fungi, plants
and animals. Many organisms including Bacillus subtilis,
Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis
thaliana and Caenorhabditis elegans possess multiple
SulP family paralogues. Many of these proteins are
functionally characterized, and all are sulfate uptake
transporters. Some transport their substrate with high
affinities, while others transport it with relatively
low affinities. Most function by SO42- :H+symport, but
SO42- :HCO3- antiport has been reported for the rat
protein (spP45380). The bacterial proteins vary in size
from 434 residues to 566 residues with one exception, a
Mycobacterium tuberculosis protein with 784 residues.
The eukaryotic proteins vary in size from 611 residues
to 893 residues with one exception, a protein designated
"early nodulin 70 protein" from Glycine max which is
reported to be of 485 residues. Thus, the eukaryotic
proteins are almost without exception larger than the
prokaryotic proteins. These proteins exhibit 10-13
putative transmembrane a-helical spanners (TMSs)
depending on the protein. The phylogenetic tree for the
SulP family reveals five principal branches. Three of
these are bacterial specific as follows: one bears a
single protein from M. tuberculosis; a second bears two
proteins, one from M. tuberculosis, the other from
Synechocystis sp, and the third bears all remaining
prokaryotic proteins. The remaining two clusters bear
only eukaryotic proteins with the animal proteins all
localized to one branch and the plant and fungal
proteins localized to the other. The generalized
transport reactions catalyzed by SulP family proteins
are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+
(in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3-
(out) [Transport and binding proteins, Anions].
Length = 563
Score = 120 bits (303), Expect = 3e-32
Identities = 52/121 (42%), Positives = 79/121 (65%), Gaps = 9/121 (7%)
Query: 63 PILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYTIF 122
P+L+WLP Y + DL+AG+TVG+ +IPQA+AY+ +AGL P GLY+SF+ F+Y +F
Sbjct: 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALF 60
Query: 123 GSCKDSAIGPTAIMSILTRENLHGLG---------PQFAVFLTFVSGIVQLFMGLLQLAL 173
G+ +D AIGP A+MS+L + +G + A LT ++GI Q+ +GLL+L
Sbjct: 61 GTSRDIAIGPVAVMSLLLGSVIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGF 120
Query: 174 I 174
+
Sbjct: 121 L 121
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 108 bits (271), Expect = 8e-28
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 56 KMLHKKVPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMA 115
K L ++P L+WLP Y DL+AG+TV +P A+A++ AG+PP+ GLY+S +A
Sbjct: 1 KRLRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVA 60
Query: 116 CFVYTIFGSCKDSAIGPTAIMSILTRENLHGL---GPQFAVFLTFVSGIVQLFMGLLQLA 172
+Y +FG + GPT +++ + L G A T ++G+ Q+ +GLL+L
Sbjct: 61 GIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLALAFLATLLAGVFQILLGLLRLG 120
>gnl|CDD|183265 PRK11660, PRK11660, putative transporter; Provisional.
Length = 568
Score = 62.3 bits (152), Expect = 7e-12
Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Query: 71 YNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFVYTIFGSCKDSAI 130
Y + DL+AG+TVG+ IP A+A + +G+PPQ GLY++ +A V + G + S
Sbjct: 24 YTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVS 83
Query: 131 GPTAIMSILTRENLHGLGPQFAV----FLTFVSGIVQLFMGLLQL 171
GPTA ++ L+ + QF + T +SGI+ + MGL +L
Sbjct: 84 GPTAAFVVI----LYPVSQQFGLAGLLVATLMSGIILILMGLARL 124
>gnl|CDD|221583 pfam12449, DUF3684, Protein of unknown function (DUF3684). This
domain family is found in eukaryotes, and is typically
between 1072 and 1090 amino acids in length.
Length = 1084
Score = 32.7 bits (75), Expect = 0.10
Identities = 30/139 (21%), Positives = 45/139 (32%), Gaps = 23/139 (16%)
Query: 25 DLSSLDPPVGPRQRVHVSEML--KEKARKVFTKKMLHKKVPILQWLPEYNSESAVSDLVA 82
S +D G RQR SE+ KE R + +PIL W ++ S +
Sbjct: 656 AESGMDSKKGRRQRYKASELYEPKEALRAL--------GLPILDWPGKWRPSSDEGKFLF 707
Query: 83 GVTVGLTVIPQAIAYSNVAGLPPQVGLYSSFMACFV-------YTIFGSCKDSAIGPTAI 135
++GL P A + L + M+ F+ Y F D + A
Sbjct: 708 --SLGLRSFPSAPELIELMASSDDADLRTKAMSYFISNHHANGYAAF----DISAVTIAF 761
Query: 136 MSILTRENLHGLGPQFAVF 154
+ E L F
Sbjct: 762 LPAEGNEKEGKLSTPSECF 780
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 31.9 bits (73), Expect = 0.18
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 107 VGLYSSFMACFVYTIFGSCKDSAIGPTAIMSILTRENLH-------GLGPQFAVFLTFVS 159
+ LY I+G GP ++S L L GL + L+ +
Sbjct: 410 ILLYLGIST----IIWGFLYGEFFGPAVLLSTLPIGLLFVYHGLDEGLLFSNILILSLLI 465
Query: 160 GIVQLFMGLL 169
G++ L +GLL
Sbjct: 466 GVLHLSLGLL 475
>gnl|CDD|235456 PRK05425, PRK05425, asparagine synthetase AsnA; Provisional.
Length = 327
Score = 29.0 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 43 EMLKEKARKVF-----TKKMLHKKVPILQWLPE 70
+ LKE K++ T+K + KK P+L +LPE
Sbjct: 133 DYLKETVEKIYKAIKATEKAVSKKYPLLPFLPE 165
>gnl|CDD|235998 PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.
Length = 500
Score = 28.9 bits (65), Expect = 1.4
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 74 ESAV-SDLVAGVTVGLTVIPQAIAYSNVAGLPPQVGL 109
ES V +DLV GV + IP AI +S +G+P GL
Sbjct: 308 ESPVDADLVIGVPD--SGIPAAIGFSQASGIPYAEGL 342
>gnl|CDD|219662 pfam07954, DUF1689, Protein of unknown function (DUF1689). Family
of fungal proteins with unknown function. A member of
this family has been found to localise in the
mitochondria.
Length = 152
Score = 27.7 bits (62), Expect = 2.3
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 20/76 (26%)
Query: 93 QAIAY-SNVAGLPPQVGLYSSFMACFVYTIFGSCKDSAIGPTAIMSILTRENLHGLGPQF 151
Q+IA + G Y FMA F GPTA T P+
Sbjct: 27 QSIARATLWGG-------YGGFMAGF------------GGPTAYYRYKTGAIKGVPVPRI 67
Query: 152 AVFLTFVSGIVQLFMG 167
FL+F+ G+ L +G
Sbjct: 68 FFFLSFLLGVTALVVG 83
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.4 bits (64), Expect = 2.3
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 107 VGLYSSFMACFVYTIFGSCKDSAIGPTAIMSILTRENLHGL-----GPQFAVFLTFVSGI 161
+ +Y + GS ++ L + + ++ + G+
Sbjct: 395 ILIYLGISTIIWGLLTGSFFGFSLPIFLPGGYLELPEGYPSLSTENDVMTILIISLLIGV 454
Query: 162 VQLFMGLL 169
+ LF+GLL
Sbjct: 455 IHLFLGLL 462
>gnl|CDD|237150 PRK12608, PRK12608, transcription termination factor Rho;
Provisional.
Length = 380
Score = 28.1 bits (63), Expect = 2.9
Identities = 8/25 (32%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 27 SSLDPPVGPRQRVHVSEMLKEKARK 51
S+ D P P + + V+E++ E+A++
Sbjct: 192 STFDRP--PDEHIRVAELVLERAKR 214
>gnl|CDD|220520 pfam10011, DUF2254, Predicted membrane protein (DUF2254). Members
of this family of bacterial proteins comprises various
hypothetical and putative membrane proteins. Their exact
function, has not, as yet, been defined.
Length = 369
Score = 27.5 bits (62), Expect = 4.3
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 35/101 (34%)
Query: 81 VAGVTVGLTVIPQAIAYSNVAGLPPQVG--LYSSFM-------------ACFVYTIFGSC 125
V + +TV+ A + Q L FM FVY++
Sbjct: 60 VTTFSFSITVV----ALQLASS---QFTPRLLRLFMEDRTTQNVLGTFIGTFVYSL---- 108
Query: 126 KDSAIGPTAIMSILTRENLHGLGPQFAVFLTFVSGIVQLFM 166
++ I R +G P+ +V +T + ++ +
Sbjct: 109 ---------LVLITIRGGAYGFVPRLSVLVTILLAVLSVAA 140
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 26.8 bits (60), Expect = 5.7
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 119 YTIFGSCKDSAIGPTAIMSILTR-ENLHGLGPQFAVFLTFV 158
YT+FGS KD I P A+ + + F+V ++++
Sbjct: 94 YTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYL 134
>gnl|CDD|219638 pfam07914, DUF1679, Protein of unknown function (DUF1679). The
region featured in this family is found in a number of
C. elegans proteins, in one case as a repeat. In many of
the family members, this region is associated with the
CHK region described by SMART as being found in ZnF_C4
and HLH domain-containing kinases. In fact, one member
of this family is annotated as being a member of the
nuclear hormone receptor family, and contains regions
typical of such proteins (Interpro:IPR000536,
Interpro:IPR008946, and Interpro:IPR001628).
Length = 413
Score = 26.9 bits (60), Expect = 6.2
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 31 PPVGP-RQRVHVSEMLKEKARKVFTKKM 57
P +GP +SE KE+ R+V +KM
Sbjct: 371 PLIGPFLDSKSMSEEEKEEYREVVIEKM 398
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.408
Gapped
Lambda K H
0.267 0.0887 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,870,603
Number of extensions: 804857
Number of successful extensions: 824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 820
Number of HSP's successfully gapped: 36
Length of query: 176
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 86
Effective length of database: 6,945,742
Effective search space: 597333812
Effective search space used: 597333812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.1 bits)