RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6799
         (176 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 36/123 (29%)

Query: 41  VSEMLKEKARKVF-TKKMLHKKVPILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSN 99
            +E L E  R     +K+  + + IL+WL   ++      L   + +             
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LSIPISC----------- 238

Query: 100 VAGLPPQVGLYSSFMACFVYTIFGSCKDSAIGPTAIMSILTRENLHGLGPQFAVFLTFVS 159
                P +G+    +A +V T     K     P  +     R  L G             
Sbjct: 239 -----PLIGVIQ--LAHYVVT----AKLLGFTPGEL-----RSYLKGA-------TGHSQ 275

Query: 160 GIV 162
           G+V
Sbjct: 276 GLV 278



 Score = 35.4 bits (81), Expect = 0.007
 Identities = 39/177 (22%), Positives = 56/177 (31%), Gaps = 52/177 (29%)

Query: 3   TIVNGYHNPKLISSYPTKD---FACDLSSLDPPVGPRQ-RVHVSEMLKEKARK-VFTKKM 57
           ++VNG  N  L+ S P +        L     P G  Q R+  SE      RK  F+ + 
Sbjct: 369 SLVNGAKN--LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE------RKLKFSNRF 420

Query: 58  LHKKVP------------ILQWLPEYNSESAVSDLVAGVTVGLTVIPQAIAYSNVAGLPP 105
           L    P            I + L + N      D+   + V          Y    G   
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI--QIPV----------YDTFDGSDL 468

Query: 106 QVGLYSSFMACFVYTIF-------GSCKDSA-----IGP--TAIMSILTRENLHGLG 148
           +V L  S     V  I         + +  A      GP   + + +LT  N  G G
Sbjct: 469 RV-LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524



 Score = 29.2 bits (65), Expect = 0.71
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 36/130 (27%)

Query: 18  PTKDFACDLSSLDPPVGPRQRV-----HVSEMLKEKARKVFTKKMLHKKVPILQW-LPEY 71
           PT+ FA D    D P  P + V     +VS +++      F          +L   L E+
Sbjct: 44  PTEGFAAD----DEPTTPAELVGKFLGYVSSLVEPSKVGQFD--------QVLNLCLTEF 91

Query: 72  NSE--------SAVSDLVAGVTVGLTVIPQAI-AY--SNVAGLPPQVGLYSS--FMACF- 117
            +         +  + L+      L    + I  Y  + +    P     +S  F A   
Sbjct: 92  ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151

Query: 118 ----VYTIFG 123
               +  IFG
Sbjct: 152 GNAQLVAIFG 161



 Score = 25.8 bits (56), Expect = 9.9
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 5/28 (17%)

Query: 151 FAVFLTFVSGIVQ-----LFMGLLQLAL 173
              FL +VS +V+      F  +L L L
Sbjct: 61  VGKFLGYVSSLVEPSKVGQFDQVLNLCL 88


>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel,
           structu genomics, PSI-2, protein structure initiative;
           2.01A {Agrobacterium tumefaciens str}
          Length = 256

 Score = 26.5 bits (59), Expect = 4.9
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 8/67 (11%)

Query: 80  LVAGVTVGLTVIPQAIAYSNVAG--LPPQVGLYSSFMA------CFVYTIFGSCKDSAIG 131
            +  +  G   I      SN  G   P    L S+ +        F+  I GS       
Sbjct: 126 ALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPA 185

Query: 132 PTAIMSI 138
             A ++I
Sbjct: 186 GFAPIAI 192


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,593,154
Number of extensions: 143082
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 13
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)