RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy680
(122 letters)
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide
phosphodiesterase 2A, GAF A and GAF B domains {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 45.4 bits (106), Expect = 1e-07
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 12 DLKSLSKKTVDNVSVLLDADGASLFFVERRRGGKKCLVSKVFDLHSGAGLVYSTADEVEV 71
D+ L ++ + L +A+ S+F +++ LV+KVFD +V + E+ +
Sbjct: 1 DVSVLLQEIITEARNLSNAEICSVFLLDQNE-----LVAKVFDGG----VVDDESYEIRI 51
Query: 72 PWGVGILGHVAVTGETVNLQ 91
P GI GHVA TG+ +N+
Sbjct: 52 PADQGIAGHVATTGQILNIP 71
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide
phosphodiesterase 2A, GAF A and GAF B domains {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 187
Score = 45.0 bits (105), Expect = 2e-07
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 11/89 (12%)
Query: 1 MAIVRDIARDLDLKSLSKKTVDNVSVLLDADGASLFFVERRRGGKKCLVSKVFDLHSGAG 60
+ + ++ DLD SL K + + A L V L
Sbjct: 9 LQLCGELF-DLDATSLQLKVLQYLQQETQATHCCLLLVSEDN----------LQLSCKVI 57
Query: 61 LVYSTADEVEVPWGVGILGHVAVTGETVN 89
+EV P +G LG V + +
Sbjct: 58 GDKVLGEEVSFPLTMGRLGQVVEDKQCIQ 86
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 31.2 bits (71), Expect = 0.020
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 90 LQKKKEKKKKKKKKKKKKKKKKKKKAE 116
Q +KE+KK+ ++KK+ + +++K E
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFE 127
Score = 28.9 bits (65), Expect = 0.11
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 93 KKEKKKKKKKKKKKKKKKKKKKAEIERK 120
+ +K++KK+ ++KK+ + ++ + E
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 25.8 bits (57), Expect = 1.2
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 94 KEKKKKKKKKKKKKKKKKKKKAEIERKRY 122
+ +K++KK+ ++KK+ + + E + Y
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDY 130
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 30.5 bits (69), Expect = 0.031
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 90 LQKKKEKKKKKKKKKKKKKKKKKKKAE 116
+ + E +K+ K++K K K++ +K
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEKLL 135
Score = 28.9 bits (65), Expect = 0.13
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 93 KKEKKKKKKKKKKKKKKKKKKKAEIERK 120
K + + +K+ K++K K K++ ++ ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 25.4 bits (56), Expect = 1.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 94 KEKKKKKKKKKKKKKKKKKKKAEIERKRY 122
K + + +K+ K++K K K++ E K Y
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEY 138
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 192
Score = 28.8 bits (64), Expect = 0.14
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 2 AIVRDIARDLDLKSLSKKTVDNVSVLLDAD 31
I+ + D SL D + + D
Sbjct: 12 RIIAQVQLHNDTASLLSNVTDELRRMTGYD 41
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 27.4 bits (61), Expect = 0.20
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 41 RRGGKKCLVSKVFDLHSGAGLVYSTADEVEVPWGVGILGHVAVTGETVNLQKKKEKKKKK 100
R G KC++ + D LV D V + H+ T + +++QK ++ K
Sbjct: 16 REAGSKCVIVDIID--DNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVK 73
Query: 101 KKKKKKKKKKKKKKAE 116
KK ++ + K+
Sbjct: 74 KKLEESNLTEYMKEKI 89
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 27.6 bits (60), Expect = 0.35
Identities = 6/36 (16%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 90 LQKKKEKKKKKKKKKKKKKKKKKKK---AEIERKRY 122
L+++ E+ + +++ + + K++ + +ERK
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKEL 36
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 27.6 bits (61), Expect = 0.42
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 91 QKKKEKKKKKKKKKKKKKKKKKKK 114
QK++E ++K ++ K K+K +K++
Sbjct: 308 QKRRETEEKMRRAKLAKEKAEKER 331
Score = 27.2 bits (60), Expect = 0.50
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 92 KKKEKKKKKKKKKKKKKKKKKKKAEIER 119
K+ +K+++ ++K ++ K K+KAE ER
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 26.9 bits (59), Expect = 0.75
Identities = 6/25 (24%), Positives = 18/25 (72%)
Query: 89 NLQKKKEKKKKKKKKKKKKKKKKKK 113
N ++++ ++K ++ K K+K +K++
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEKER 331
Score = 26.5 bits (58), Expect = 1.0
Identities = 6/32 (18%), Positives = 20/32 (62%)
Query: 90 LQKKKEKKKKKKKKKKKKKKKKKKKAEIERKR 121
+ ++ +K+++ ++K ++ K K + E++R
Sbjct: 300 FLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 23.4 bits (50), Expect = 9.5
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 86 ETVNLQKKKEKKKKKKKKKKKKKKKK 111
E ++ +EK ++ K K+K +K++
Sbjct: 306 ENQKRRETEEKMRRAKLAKEKAEKER 331
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 27.0 bits (59), Expect = 0.55
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 93 KKEKKKKKKKKKKKKKKKKKKKA 115
K K++ + + + + +K+A
Sbjct: 160 PKPKREAFLEANRAELVRFQKEA 182
Score = 23.9 bits (51), Expect = 6.7
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 90 LQKKKEKKKKKKKKKKKKKKKKK 112
L K K + + + + + +K+
Sbjct: 159 LPKPKREAFLEANRAELVRFQKE 181
Score = 23.2 bits (49), Expect = 9.6
Identities = 2/22 (9%), Positives = 11/22 (50%)
Query: 92 KKKEKKKKKKKKKKKKKKKKKK 113
K +++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 194
Score = 26.5 bits (58), Expect = 0.78
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 2 AIVRDIARDLDLKSLSKKTVDNVSVLLDAD 31
+R + DL + V + D
Sbjct: 12 VAIRRLQTAADLPTACWIAASEVRRITGFD 41
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 196
Score = 26.1 bits (57), Expect = 1.00
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 2 AIVRDIARDLDLKSLSKKTVDNVSVLLDAD 31
A + + + +L+ V+ V + D
Sbjct: 12 AALNRLRQQANLRDFYDVIVEEVRRMTGFD 41
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId:
82367]}
Length = 123
Score = 25.9 bits (56), Expect = 1.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 74 GVGILGHVAVTGETVNLQKKKEKKKKKKKKKK 105
G+G++G V V NL K K KK +++
Sbjct: 83 GMGMVGLVQVGDAPENLDAAKTAKMPKKARER 114
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 25.9 bits (56), Expect = 1.2
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 20/98 (20%)
Query: 3 IVRDIARDLDLKSLSKKTVDNVSVLL---------DADGASLFFVERRRGGKKCLVSKVF 53
++ D + + N S L+ D + A + + L
Sbjct: 25 LLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLIL----- 79
Query: 54 DLHSGAGLVYSTADEVEVPWGVGILGHVAVTGETVNLQ 91
G + +G G+ G A T ET +
Sbjct: 80 ------GPFQGKVACQMIQFGKGVCGTAASTKETQIVP 111
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 24.3 bits (53), Expect = 2.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 49 VSKVFDLHSGAGLVYSTADE 68
+ + D S G +YST D+
Sbjct: 41 IKQAVDFLSNEGHIYSTVDD 60
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 24.4 bits (53), Expect = 2.7
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 89 NLQKKKEKKKKKKKKKKKKKKKKKKKAE 116
N QK + K +K K K + +A
Sbjct: 13 NAQKSAMARAKNLEKAKAAGKGSQLEAN 40
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 24.6 bits (53), Expect = 4.1
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 89 NLQKKKEKKKKKKKKKKKKKKKKK 112
N+ E +K++ K K+ + +K
Sbjct: 213 NVTVDLEMRKQRNKTTKQVRTIEK 236
Score = 24.2 bits (52), Expect = 4.8
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 92 KKKEKKKKKKKKKKKKKKKKKKKAEIERKR 121
K + +K++ K K+ K
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKI 237
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 24.0 bits (51), Expect = 4.5
Identities = 6/25 (24%), Positives = 18/25 (72%)
Query: 95 EKKKKKKKKKKKKKKKKKKKAEIER 119
+ K+ K+K ++ ++K+++ E+E+
Sbjct: 79 DSKRLAKRKLIEENREKRRREELEK 103
>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania
major [TaxId: 5664]}
Length = 302
Score = 23.9 bits (51), Expect = 6.9
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 100 KKKKKKKKKKKKKKKAEIERKRY 122
++K +++ + E R RY
Sbjct: 220 NRRKNTPYTEQQVEFQEFRRGRY 242
>d2ajta1 b.43.2.2 (A:329-498) L-arabinose isomerase AraA
{Escherichia coli [TaxId: 562]}
Length = 170
Score = 23.5 bits (51), Expect = 7.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 43 GGKKCLVSKVFDLHSGAGLVYSTAD 67
GGK +F+ +G +V S D
Sbjct: 46 GGKDDPARLIFNTQTGPAIVASLID 70
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 411
Score = 23.9 bits (51), Expect = 8.1
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 96 KKKKKKKKKKKKKKKKKKKAEIERKR 121
++ K K+K+ +K + R
Sbjct: 51 AAREIKSLASKRKEDLQKITFLSRDI 76
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 23.3 bits (50), Expect = 9.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 99 KKKKKKKKKKKKKKKKAEIERKRY 122
K K K K +++ K + E E++
Sbjct: 2 KNKGKGGKNRRRGKNENESEKREL 25
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 22.8 bits (49), Expect = 9.3
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 96 KKKKKKKKKKKKKKKKKK 113
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 22.8 bits (49), Expect = 9.3
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 97 KKKKKKKKKKKKKKKKKK 114
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 108
Score = 23.1 bits (49), Expect = 9.6
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 89 NLQKKKEKKKKKKKKKKKKKKKKKKKA 115
+L + + +K K K KA
Sbjct: 65 SLTPLTSEAISQFLEKPKPKTASLIKA 91
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 22.9 bits (49), Expect = 9.7
Identities = 3/24 (12%), Positives = 11/24 (45%)
Query: 90 LQKKKEKKKKKKKKKKKKKKKKKK 113
L++ + + K+ +K++
Sbjct: 78 LKEVVPEGYEMKRVGDYYVFEKRE 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.132 0.357
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 442,361
Number of extensions: 21120
Number of successful extensions: 800
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 251
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)