BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6801
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 242 bits (617), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 111/212 (52%), Positives = 162/212 (76%), Gaps = 2/212 (0%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
+L+AVI+GAPG GKGT+SSRI HF +KH+++GD+LR ++ + T +G+ AK ++++G L+
Sbjct: 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLI 66
Query: 67 PDDLMIDLVKNEVKDL-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
PDD+M L +E+K+L + ++LLDGFPRT QA AL + + + V+++NVP EVI RL
Sbjct: 67 PDDVMTRLALHELKNLTQYSWLLDGFPRTLPQAEALDRAY-QIDTVINLNVPFEVIKQRL 125
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
+ RWIHPASGRVYN++FN PK GIDD+TGE LIQR+DDKPE + KRL+ ++ KP+L+
Sbjct: 126 TARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLE 185
Query: 186 YYDNREVLDTFTGNTTDEIWPRIYEHLNIRIP 217
YY + VL+TF+G T++IWP +Y L ++P
Sbjct: 186 YYQKKGVLETFSGTETNKIWPYVYAFLQTKVP 217
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 238 bits (608), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 108/212 (50%), Positives = 161/212 (75%), Gaps = 2/212 (0%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
+L+A I+GAPG GKGT+SSRI HF +KH+++GD+LR ++ + T +G+ AK ++++G L+
Sbjct: 6 LLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLI 65
Query: 67 PDDLMIDLVKNEVKDL-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
PDD+M LV +E+K+L + N+LLDGFPRT QA AL + + + V+++NVP EVI RL
Sbjct: 66 PDDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAY-QIDTVINLNVPFEVIKQRL 124
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
+ RWIHP SGRVYN++FN PK GIDD+TGE L+QR+DD+PE + KRL+ ++ +P+L+
Sbjct: 125 TARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLE 184
Query: 186 YYDNREVLDTFTGNTTDEIWPRIYEHLNIRIP 217
YY + VL+TF+G T++IWP +Y L ++P
Sbjct: 185 YYRKKGVLETFSGTETNKIWPHVYAFLQTKLP 216
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 213 bits (542), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 151/218 (69%), Gaps = 2/218 (0%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
+L+AVI+G PG GKGT+ RI +F ++H+++G LR +I +T +G AK+Y+ K LLV
Sbjct: 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLV 86
Query: 67 PDDLMIDLVKNEVKDLKC-NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
PD ++ L+ +E+++ + ++LLDGFPRT QA AL K + V+ +N+P E + DRL
Sbjct: 87 PDHVITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDRL 145
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
S+RWIHP SGRVYNLDFN P GIDD+TGE L+Q++DDKPEA+ RL + KP+++
Sbjct: 146 SRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIE 205
Query: 186 YYDNREVLDTFTGNTTDEIWPRIYEHLNIRIPPLKRLE 223
Y +R VL F+G T++IWP +Y + +I P++ E
Sbjct: 206 LYKSRGVLHQFSGTETNKIWPYVYTLFSNKITPIQSKE 243
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 209 bits (533), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 150/218 (68%), Gaps = 2/218 (0%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
+L+AVI+G PG GKGT+ RI +F ++H+++G LR +I +T +G AK+Y+ K LLV
Sbjct: 5 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLV 64
Query: 67 PDDLMIDLVKNEVKDLKC-NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
PD ++ L+ +E+++ + ++LLDGFPRT QA AL K + V+ +N+P E + DRL
Sbjct: 65 PDHVITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDRL 123
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
S+RWIHP SGRVYNLDFN P GIDD+TGE L+Q++DDKPEA+ R + KP+++
Sbjct: 124 SRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIE 183
Query: 186 YYDNREVLDTFTGNTTDEIWPRIYEHLNIRIPPLKRLE 223
Y +R VL F+G T++IWP +Y + +I P++ E
Sbjct: 184 LYKSRGVLHQFSGTETNKIWPYVYTLFSNKITPIQSKE 221
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 122/181 (67%), Gaps = 2/181 (1%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
+++GAPG GKGT ++ I + F + I+TGD LR+ + T LG++AK Y ++G LVPD L
Sbjct: 12 ILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSL 71
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128
+I LVK +K+ C YL DGFPRT QA A + ++ + V+ I+VP II+R S R
Sbjct: 72 IIGLVKERLKEADCANGYLFDGFPRTIAQADAXKEAGVAIDYVLEIDVPFSEIIERXSGR 131
Query: 129 WIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYD 188
HPASGR Y++ FN PK G DD+TGE L+QRDDDK E +KKRL+ ++ KPL+ YY
Sbjct: 132 RTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYG 191
Query: 189 N 189
+
Sbjct: 192 D 192
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 124/195 (63%), Gaps = 6/195 (3%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ +++GAPG GKGT + I++ + + I+TGD+LR+ + + LG +AK+ M+ G LV
Sbjct: 1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 68 DDLMIDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
D+L+I LVK + C +LLDGFPRT QA A+ + ++ + V+ +VP E+I+DR+
Sbjct: 61 DELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI 120
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
R +H SGRVY++ FN PK G DD+TGE+L R DD+ E ++KRL + Q PL+
Sbjct: 121 VGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIG 180
Query: 186 YYDNREVLDTFTGNT 200
YY + GNT
Sbjct: 181 YYSK----EAEAGNT 191
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 125/187 (66%), Gaps = 7/187 (3%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ V+IG PG GKGT + + + F+ H+ATGD+LRS IA+ T LGL+AK+ M++G LV
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 68 DDLMIDLVKNEVKD---LKCNYLLDGFPRTYDQAMAL---FKNHLSP-NCVMHINVPKEV 120
DD+M++++K+E+ + K ++LDGFPRT QA L K +P + + V E+
Sbjct: 65 DDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDEL 124
Query: 121 IIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTI 180
++ R++ R IHPASGR Y+ FN PK+ DD+TGE L+QR DD +A+KKRL +
Sbjct: 125 LVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQT 184
Query: 181 KPLLDYY 187
+P++D+Y
Sbjct: 185 EPIVDFY 191
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 125/187 (66%), Gaps = 7/187 (3%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ V+IG PG GKGT + + + F+ H+ATGD+LRS IA+ T LGL+AK+ M++G LV
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 68 DDLMIDLVKNEVKD---LKCNYLLDGFPRTYDQAMAL---FKNHLSP-NCVMHINVPKEV 120
DD+M++++K+E+ + K ++LDGFPRT QA L K +P + + V E+
Sbjct: 65 DDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDEL 124
Query: 121 IIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTI 180
++ R++ R IHPASGR Y+ FN PK+ DD+TGE L+QR DD +A+KKRL +
Sbjct: 125 LVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQT 184
Query: 181 KPLLDYY 187
+P++D+Y
Sbjct: 185 EPIVDFY 191
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 164 bits (414), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 13/205 (6%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V +G PG GKGT + R+ HI+TGDILR + + T LG KAKEYM +G LVPDDL
Sbjct: 4 VFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDL 63
Query: 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMA----LFKNHLSPNCVMHINVPKEVIIDRLS 126
+I L+ EV N + DGFPRT QA A L K L + V+ VP EV+I+RLS
Sbjct: 64 IIALI-EEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLS 122
Query: 127 KRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDY 186
R I+P +G VY++ +N P PG+ K+IQR+DDKPE IKKRLE + + PL++Y
Sbjct: 123 GRRINPETGEVYHVKYNPP-PPGV------KVIQREDDKPEVIKKRLEVYREQTAPLIEY 175
Query: 187 YDNREVLDTFTGNT-TDEIWPRIYE 210
Y + +L + +E++ ++ E
Sbjct: 176 YKKKGILRIIDASKPVEEVYRQVLE 200
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 163 bits (412), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 123/195 (63%), Gaps = 6/195 (3%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ +++GAPG GKGT + I++ + + I+TGD+LR+ + + LG +AK+ M+ G LV
Sbjct: 1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 68 DDLMIDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
D+L+I LVK + C +LLDGFPRT QA A+ + ++ + V+ +VP E+I+DR+
Sbjct: 61 DELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI 120
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
R +H SGRVY++ FN PK G DD TGE+L R DD+ E ++KRL + Q PL+
Sbjct: 121 VGRRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLIG 180
Query: 186 YYDNREVLDTFTGNT 200
YY + GNT
Sbjct: 181 YYSK----EAEAGNT 191
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 123/195 (63%), Gaps = 6/195 (3%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ +++GAP GKGT + I++ + + I+TGD+LR+ + + LG +AK+ M+ G LV
Sbjct: 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 68 DDLMIDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
D+L+I LVK + C +LLDGFPRT QA A+ + ++ + V+ +VP E+I+DR+
Sbjct: 61 DELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI 120
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
R +H SGRVY++ FN PK G DD+TGE+L R DD+ E ++KRL + Q PL+
Sbjct: 121 VGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIG 180
Query: 186 YYDNREVLDTFTGNT 200
YY + GNT
Sbjct: 181 YYSK----EAEAGNT 191
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 127/203 (62%), Gaps = 6/203 (2%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++AV++G PG GKGT + R+ ++F V H+ATGD+LR+ +A + LG K K M+ G LV
Sbjct: 17 IRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS 76
Query: 68 DDLMIDLVKNEVKDLKC--NYLLDGFPRTYDQAMAL----FKNHLSPNCVMHINVPKEVI 121
D+++++L++ ++ C +LLDGFPRT QA L K + V+ ++P ++
Sbjct: 77 DEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLL 136
Query: 122 IDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIK 181
I R++ R IHP SGR Y+ +FN PK+P DDITGE LI+R DD +A+K RL+ +
Sbjct: 137 IRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTT 196
Query: 182 PLLDYYDNREVLDTFTGNTTDEI 204
PL++YY R + + T ++
Sbjct: 197 PLIEYYRKRGIHSAIDASQTPDV 219
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 160 bits (406), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 126/203 (62%), Gaps = 6/203 (2%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++AV++G PG GKGT + ++ +F V H+ATGD+LR+ +A + LG K K M+ G LV
Sbjct: 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS 76
Query: 68 DDLMIDLVKNEVKDLKC--NYLLDGFPRTYDQAMAL----FKNHLSPNCVMHINVPKEVI 121
D+++++L++ ++ C +LLDGFPRT QA L K + V+ ++P ++
Sbjct: 77 DEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLL 136
Query: 122 IDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIK 181
I R++ R IHP SGR Y+ +FN PK+P DDITGE LI+R DD +A+K RLE +
Sbjct: 137 IRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTT 196
Query: 182 PLLDYYDNREVLDTFTGNTTDEI 204
PL++YY R + + T ++
Sbjct: 197 PLVEYYSKRGIHSAIDASQTPDV 219
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 122/195 (62%), Gaps = 6/195 (3%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ +++GA GKGT + I++ + + I+TGD+LR+ + + LG +AK+ M+ G LV
Sbjct: 1 MRIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 68 DDLMIDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
D+L+I LVK + C +LLDGFPRT QA A+ + ++ + V+ +VP E+I+DR+
Sbjct: 61 DELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI 120
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
R +H SGRVY++ FN PK G DD+TGE+L R DD+ E ++KRL + Q PL+
Sbjct: 121 VGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIG 180
Query: 186 YYDNREVLDTFTGNT 200
YY + GNT
Sbjct: 181 YYSK----EAEAGNT 191
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 123/187 (65%), Gaps = 7/187 (3%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ V+IG PG GKGT + + + F+ H+ATGD+LRS IA+ T LGL+AK+ M++G LV
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 68 DDLMIDLVKNEVKD---LKCNYLLDGFPRTYDQAMAL---FKNHLSP-NCVMHINVPKEV 120
DD+M++++K+E+ + K ++L GFPRT QA L K +P + + V E+
Sbjct: 65 DDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDEL 124
Query: 121 IIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTI 180
++ R++ R IHPASGR Y+ FN PK+ DD+TGE L+Q DD +A+KKRL +
Sbjct: 125 LVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQT 184
Query: 181 KPLLDYY 187
+P++D+Y
Sbjct: 185 EPIVDFY 191
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 119/189 (62%), Gaps = 6/189 (3%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
++IGAPG GKGT I + + H++TGD+LR I T +GL+AK + G V D++
Sbjct: 9 ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFK--NHL--SPNCVMHINVPKEVIIDR 124
++ LVK + C ++LDGFPRT QA L K + + S V++ + II+R
Sbjct: 69 VLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIER 128
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
+S R HPASGR+Y++ +N PK+PGIDD+TGE L+ RDDD EA+K RL+ F + PL+
Sbjct: 129 ISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLV 188
Query: 185 DYYDNREVL 193
+Y++ +L
Sbjct: 189 KFYEDLGIL 197
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 124/212 (58%), Gaps = 7/212 (3%)
Query: 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD 68
+ + +GAPG GKGT S + H++TGD+LR + T LGLK K +N+G LV D
Sbjct: 31 RYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD 90
Query: 69 DLMIDLVKNEVKDLKC--NYLLDGFPRTYDQA----MALFKNHLSPNCVMHINVPKEVII 122
+++ LV ++K +C ++LDG+PR QA L KN + V + NVP EV++
Sbjct: 91 QMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLV 150
Query: 123 DRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKP 182
+R+S R IH SGR+Y+ FN PK P DD+T E LIQR+DD + +KKRL F P
Sbjct: 151 NRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSP 210
Query: 183 LLDYYDNREVLDTFTGNT-TDEIWPRIYEHLN 213
L+ YY N+ +L +++ +I +H++
Sbjct: 211 LISYYKNKNLLINLDATQPANDLEKKISQHID 242
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 120/195 (61%), Gaps = 6/195 (3%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G PG GKGT + RI++ + + HI+TGD+ R+ + + T LGL+AK Y++KG LVPD++
Sbjct: 4 VLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFKNHLSP----NCVMHINVPKEVIIDR 124
I +V+ + C +LLDGFPRT QA AL + + V++I V KE +++R
Sbjct: 64 TIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMER 123
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
L+ R I G Y+L FN PK PGI D G +L QR DD E + KRLE + PLL
Sbjct: 124 LTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLL 183
Query: 185 DYYDNREVLDTFTGN 199
+YD++EVL G
Sbjct: 184 AFYDSKEVLVNVNGQ 198
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 131/210 (62%), Gaps = 10/210 (4%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
LK +I GAP GKGT I + + HI+ GD+LR+ IA + G +AKE+M KG LVP
Sbjct: 6 LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 65
Query: 68 DDLMIDLVKNEVK--DLKCN-YLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDR 124
D++++++VK ++ D + N +LLDG+PR+Y QAMAL + P+ + ++VP E++++R
Sbjct: 66 DEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVER 125
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
+ R + P +G++Y+L ++ P+ I +L QR DD E +K RLET+ Q I+ LL
Sbjct: 126 VVGRRLDPVTGKIYHLKYSPPENEEI----ASRLTQRFDDTEEKVKLRLETYYQNIESLL 181
Query: 185 DYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213
Y+N ++ G+ T D ++ +I E L
Sbjct: 182 STYEN--IIVKVQGDATVDAVFAKIDELLG 209
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 119/195 (61%), Gaps = 6/195 (3%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G PG GKGT RI++ + + HI+TGD+ R+ + + T LGL+AK Y++KG LVPD++
Sbjct: 4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQ---AMALFKNHLSP-NCVMHINVPKEVIIDR 124
I +VK + C +LLDGFPRT Q + + + P + V++I V K+V+++R
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMER 123
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
L+ R I G Y+L FN PK PGI D G +L QR DD E + KRLE + I+PLL
Sbjct: 124 LTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQPLL 183
Query: 185 DYYDNREVLDTFTGN 199
D+Y + L G
Sbjct: 184 DFYSEKGYLANVNGQ 198
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 150 bits (378), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 119/195 (61%), Gaps = 6/195 (3%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G PG GKGT+ RI++ + + HI+TGD+ R+ + + T LGL+AK Y++KG LVPD++
Sbjct: 4 VLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQ---AMALFKNHLSP-NCVMHINVPKEVIIDR 124
I +VK + C +LLDGFPRT Q + + + P + V++I V K+V+++R
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMER 123
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
L+ R I G Y+L FN PK PGI D G +L QR DD E + KRLE + +PLL
Sbjct: 124 LTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLL 183
Query: 185 DYYDNREVLDTFTGN 199
D+Y + L G
Sbjct: 184 DFYSEKGYLANVNGQ 198
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 116/195 (59%), Gaps = 6/195 (3%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G PG GKGT + +II+ + + HI+TGD+ R+ I T LGLKAK +M++G LVPD++
Sbjct: 4 VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQAMAL--FKNHLSP--NCVMHINVPKEVIIDR 124
I +V + C +LLDGFPRT QA AL L + V++I V +E ++ R
Sbjct: 64 TIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKR 123
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
L+ RWI G Y+ FN P GI D G +L QR DDKPE +K RL+ + +PLL
Sbjct: 124 LTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLL 183
Query: 185 DYYDNREVLDTFTGN 199
D+Y + VL G
Sbjct: 184 DFYSQKGVLKDIDGQ 198
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 129/211 (61%), Gaps = 9/211 (4%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G PG GKGT + +I+ + + HI+TGD+ R+ + + T LGL+AK+YM++G LVPD++
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEV 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFKNHLSP-----NCVMHINVPKEVIID 123
I +V+ + C +LLDGFPRT QA AL + L+ + V+HI+V ++V+++
Sbjct: 64 TIGIVRERLSKDDCQNGFLLDGFPRTVAQAEAL-ETMLADIGRKLDYVIHIDVRQDVLME 122
Query: 124 RLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPL 183
RL+ R I G Y+L F+ P KPG+ D G +L QR DD + RLE + +KPL
Sbjct: 123 RLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPL 182
Query: 184 LDYYDNREVLDTFTGNT-TDEIWPRIYEHLN 213
+D+Y+ + L G ++++ I E L
Sbjct: 183 VDFYEQKGYLRNINGEQDMEKVFADIRELLG 213
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 126/216 (58%), Gaps = 9/216 (4%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G PG GKGT RI++ + + HI+TGD+ R+ + + T LGL+AK Y++KG LVPD++
Sbjct: 4 VLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFKNHLSP----NCVMHINVPKEVIIDR 124
I +VK + C +LLDGFPRT QA AL + + V++I V K+V+++R
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMER 123
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
L+ R I G Y+L FN PK PGI D G +L QR DD E + KRLE + PLL
Sbjct: 124 LTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLL 183
Query: 185 DYYDNREVLDTFTGNTTDEIWPRIYEHLNIRIPPLK 220
D+YD + L G + +Y L + + LK
Sbjct: 184 DFYDEKGYLVNVNGQ---QDIQDVYADLKVLLGGLK 216
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 118/195 (60%), Gaps = 6/195 (3%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G PG GKGT RI++ + + HI+TGD+ R+ + + T LGL+AK Y++KG LVPD++
Sbjct: 4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQ---AMALFKNHLSP-NCVMHINVPKEVIIDR 124
I +VK + C +LLDGFPRT Q + + + P + V++I V K+V+++R
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMER 123
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
L+ R I G Y+L FN PK PGI D G +L QR DD E + KRLE + +PLL
Sbjct: 124 LTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLL 183
Query: 185 DYYDNREVLDTFTGN 199
D+Y + L G
Sbjct: 184 DFYSEKGYLANVNGQ 198
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 118/195 (60%), Gaps = 6/195 (3%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G PG GKGT RI++ + + HI+TGD+ R+ + + T LGL+AK Y++KG LVPD++
Sbjct: 4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQ---AMALFKNHLSP-NCVMHINVPKEVIIDR 124
I +VK + C +LLDGFPRT Q + + + P + V++I V K+V+++R
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMER 123
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
L+ R I G Y+L FN PK PGI D G +L QR DD E + KRLE + +PLL
Sbjct: 124 LTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLL 183
Query: 185 DYYDNREVLDTFTGN 199
D+Y + L G
Sbjct: 184 DFYSEKGYLANVNGQ 198
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 118/195 (60%), Gaps = 6/195 (3%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G PG GKGT RI++ + + HI+TGD+ R+ + + T LGL+AK Y++KG LVPD++
Sbjct: 4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQ---AMALFKNHLSP-NCVMHINVPKEVIIDR 124
I +VK + C +LLDGFPRT Q + + + P + V++I V K+V+++R
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMER 123
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
L+ R I G Y+L FN PK PGI D G +L QR DD E + KRLE + +PLL
Sbjct: 124 LTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLL 183
Query: 185 DYYDNREVLDTFTGN 199
D+Y + L G
Sbjct: 184 DFYSEKGYLANVNGQ 198
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 118/195 (60%), Gaps = 6/195 (3%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G PG GKGT RI++ + + HI+TGD+ R+ + + T LGL+AK Y++KG LVPD++
Sbjct: 4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQ---AMALFKNHLSP-NCVMHINVPKEVIIDR 124
I +VK + C +LLDGFPRT Q + + + P + V++I V K+V+++R
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMER 123
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
L+ R I G Y+L FN PK PGI D G +L QR DD E + KRLE + +PLL
Sbjct: 124 LTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLL 183
Query: 185 DYYDNREVLDTFTGN 199
D+Y + L G
Sbjct: 184 DFYSEKGYLANVNGQ 198
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 10/197 (5%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G PG GKGT + RI++ + HI+TGD+ R+ I + T LG+KAK +M++G LVPD++
Sbjct: 4 VLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEV 63
Query: 71 MIDLVKNEVKDLKCN--YLLDGFPRTYDQAMALFKNHLSPNC------VMHINVPKEVII 122
I +V+ + C+ +LLDGFPRT QA AL + L + V++I V KE +I
Sbjct: 64 TIGIVRERLSKSDCDNGFLLDGFPRTVPQAEAL--DQLLADMGRKIEHVLNIQVEKEELI 121
Query: 123 DRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKP 182
RL+ R I G Y+L FN P+ G D G +L QR DD P+ + RLE P
Sbjct: 122 ARLTGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAP 181
Query: 183 LLDYYDNREVLDTFTGN 199
LL +YD++EVL G
Sbjct: 182 LLAFYDSKEVLVNINGQ 198
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 118/195 (60%), Gaps = 6/195 (3%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G PG GKGT RI++ + + HI+TGD+ R+ + + T LGL+AK Y++KG LVPD++
Sbjct: 4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQ---AMALFKNHLSP-NCVMHINVPKEVIIDR 124
I +VK + C +LLDGFPRT Q + + + P + V++I V K+V+++R
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMER 123
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
L+ R I G Y+L FN PK PGI D G +L QR DD E + KRLE + +PLL
Sbjct: 124 LTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLL 183
Query: 185 DYYDNREVLDTFTGN 199
D+Y + L G
Sbjct: 184 DFYSEKGYLVNVNGQ 198
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 27/205 (13%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
+ +G PG GKGT +SR+ K ++TGDILR H+A+ T LG + + M +G LVPDDL
Sbjct: 8 IFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDL 67
Query: 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWI 130
+++L++ E+ + + DGFPRT QA AL LS + V + + R I
Sbjct: 68 ILELIREELAE---RVIFDGFPRTLAQAEAL-DRLLSETGTRLLGVVLVEVPEEELVRRI 123
Query: 131 HPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNR 190
+ +L R DD E +++RLE + + +PL+ YY+ R
Sbjct: 124 ----------------------LRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEAR 161
Query: 191 EVLDTFTG-NTTDEIWPRIYEHLNI 214
VL G T DE++ RI L I
Sbjct: 162 GVLKRVDGLGTPDEVYARIRAALGI 186
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 31/206 (15%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLM 71
++G PG GKGT +I+ + H++TGD+LRS ++ + G K E M KG LVP + +
Sbjct: 14 VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETV 73
Query: 72 IDLVKNEV---KDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128
+D++++ + + +L+DG+PR Q + P +++++ E + RL KR
Sbjct: 74 LDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKR 133
Query: 129 WIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYD 188
SGRV DD E IKKRLET+ + +P++ +Y+
Sbjct: 134 G--ETSGRV-------------------------DDNEETIKKRLETYYKATEPVIAFYE 166
Query: 189 NREVLDTFTG-NTTDEIWPRIYEHLN 213
R ++ + D ++ ++ HL+
Sbjct: 167 KRGIVRKVNAEGSVDSVFSQVCTHLD 192
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 31/206 (15%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLM 71
++G PG GKGT +I+ + H++TGD+LR+ ++ + G E M KG LVP + +
Sbjct: 14 VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETV 73
Query: 72 IDLVKNEV---KDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128
+D++++ + D +L+DG+PR Q + P +++++ E + RL KR
Sbjct: 74 LDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKR 133
Query: 129 WIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYD 188
SGRV DD E IKKRLET+ + +P++ +Y+
Sbjct: 134 G--ETSGRV-------------------------DDNEETIKKRLETYYKATEPVIAFYE 166
Query: 189 NREVLDTFTG-NTTDEIWPRIYEHLN 213
R ++ + D+++ ++ HL+
Sbjct: 167 KRGIVRKVNAEGSVDDVFSQVCTHLD 192
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 31/206 (15%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLM 71
++G PG GKGT +++ F+ H+++GD+LR+ + + G + K M +G LVP +++
Sbjct: 34 VLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVV 93
Query: 72 IDLVKN---EVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128
+ L+K ++ D C++L+DG+PR DQ + K CV++ +V +EV+ RL KR
Sbjct: 94 LALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKR 153
Query: 129 WIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYD 188
S RV DD E I KR TF++ KP++++Y
Sbjct: 154 A--ETSNRV-------------------------DDNEETIVKRFRTFNELTKPVIEHYK 186
Query: 189 NR-EVLDTFTGNTTDEIWPRIYEHLN 213
+ +V+ T D I+ ++ L
Sbjct: 187 QQNKVITIDASGTVDAIFDKVNHELQ 212
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 102/198 (51%), Gaps = 11/198 (5%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
+I G G GKGT + + D +++ HI +G I R HI T LG KAKE++++G LVPDD+
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 71 MIDLVKNEVKDL-KCNYLLDGFPRTYDQAMALF----KNHLSPNCVMHINVPKEVIIDRL 125
I +V ++ K +LLDGFPR QA LF + + N V+ I +P+EV +R+
Sbjct: 64 TIPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRI 123
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGID--DITGEKLIQRDDDKPE-AIKKRLETFDQTIKP 182
R I + N F KP D + G L R DD+ E AI KR + + T+
Sbjct: 124 MGRRICKNNPNHPNNIFIEAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDG 183
Query: 183 LLD---YYDNREVLDTFT 197
L YY N + F
Sbjct: 184 TLAAAYYYKNMAAKEGFV 201
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 105/203 (51%), Gaps = 21/203 (10%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
+I G G GKGT + + D +++ HI +G I R HI T LG KAKE++++G LVPDD+
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 71 MIDLVKNEVKDL-KCNYLLDGFPRTYDQAMALF----KNHLSPNCVMHINVPKEVIIDRL 125
I +V ++ K +LLDGFPR QA LF + + N V+ I +P+EV +R+
Sbjct: 64 TIPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRI 123
Query: 126 SKRWI------HPASGRVYNLDFNAPKKPG-IDDITGEKLIQRDDDKPE-AIKKRLETFD 177
R I HP N+ +A K G + + G L R DD+ E AI KR + +
Sbjct: 124 MGRRICKNNPNHPN-----NIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYY 178
Query: 178 QTIKPLLD---YYDNREVLDTFT 197
T+ L YY N + F
Sbjct: 179 NTVDGTLAAAYYYKNMAAKEGFV 201
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 40/213 (18%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ +++G PG GKGT + ++ + + I+TG++ R +I + T LG++AK Y++ G LVP
Sbjct: 1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 68 DDLMIDLVKNEVK--DLKCNYLLDGFPRTYDQAMALF----KNHLSPNCVMHINVPKEVI 121
DL +LV + + D ++LDG+PR+ +QA AL + + V+ V +EV+
Sbjct: 61 SDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL 120
Query: 122 IDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIK 181
++RL R R DD + I R++ +
Sbjct: 121 LERLKGRG-------------------------------RADDTDDVILNRMKVYRDETA 149
Query: 182 PLLDYYDNREVLDTFTG-NTTDEIWPRIYEHLN 213
PLL+YY R+ L T T DE++ R L
Sbjct: 150 PLLEYY--RDQLKTVDAVGTMDEVFARALRALG 180
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 40/213 (18%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ +++G PG GKGT + ++ + + I+TG++ R +I + T LG++AK Y++ G LVP
Sbjct: 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 80
Query: 68 DDLMIDLVKNEVK--DLKCNYLLDGFPRTYDQAMALF----KNHLSPNCVMHINVPKEVI 121
DL +LV + + D ++LDG+PR+ +QA AL + + V+ V +EV+
Sbjct: 81 SDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL 140
Query: 122 IDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIK 181
++RL R R DD + I R++ +
Sbjct: 141 LERLKGRG-------------------------------RADDTDDVILNRMKVYRDETA 169
Query: 182 PLLDYYDNREVLDTFTG-NTTDEIWPRIYEHLN 213
PLL+YY R+ L T T DE++ R L
Sbjct: 170 PLLEYY--RDQLKTVDAVGTMDEVFARALRALG 200
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 97/184 (52%), Gaps = 32/184 (17%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQ-NTTLGLKAKEYMNKGLLVPDDL 70
++G PG GKGT +++ ++ H++ GD+LR+ + + G K + +G +VP ++
Sbjct: 20 VLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEI 79
Query: 71 MIDLVKNEVKD-LKCN---YLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLS 126
+ L++N + D +K N +L+DGFPR DQA++ ++ + ++ + P++++++RL
Sbjct: 80 TLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLL 139
Query: 127 KRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDY 186
+R K R DD E+IKKR TF +T P+++Y
Sbjct: 140 ERG---------------------------KTSGRSDDNIESIKKRFNTFKETSMPVIEY 172
Query: 187 YDNR 190
++ +
Sbjct: 173 FETK 176
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 38/214 (17%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQ-NTTLGLKAKEYMNKGLLV 66
L ++G PG GKGT +RI++ + H++ G++LR ++ G ++Y+ +G +V
Sbjct: 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIV 63
Query: 67 PDDLMIDLVKNEVKDL------KCNYLLDGFPRTYDQAMALFK---NHLSPNCVMHINVP 117
P ++ I L+K E+ K +L+DGFPR D K + V+ +
Sbjct: 64 PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCN 123
Query: 118 KEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFD 177
E+ I+R +R +SG R DD E+++KR++T+
Sbjct: 124 NEICIERCLER--GKSSG-------------------------RSDDNRESLEKRIQTYL 156
Query: 178 QTIKPLLDYYDNR-EVLDTFTGNTTDEIWPRIYE 210
Q+ KP++D Y+ +V + DE++ + +
Sbjct: 157 QSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQ 190
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 31/181 (17%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLM 71
++G PG GKGT + I+ F H++ GD+LR + G + G +VP +
Sbjct: 11 VLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVT 70
Query: 72 IDLVKNEV-KDLKCNYLLDGFPR---TYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127
+ L+KN + + N+L+DGFPR + K+ + V+ + P+EV+ RL K
Sbjct: 71 VKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLK 130
Query: 128 RWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYY 187
R +SG R DD E+IKKR TF+ K ++D+Y
Sbjct: 131 R--GESSG-------------------------RSDDNIESIKKRFNTFNVQTKLVIDHY 163
Query: 188 D 188
+
Sbjct: 164 N 164
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 32/196 (16%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLM 71
IIG PG GKGT ++++ + H++TG++LR +A + ++ M +G LVP ++
Sbjct: 17 IIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIV 76
Query: 72 IDLVKN----EVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127
++L+K + D + +L+DG+PR Q + P V+ ++ + + +RL
Sbjct: 77 LELLKEAMVASLGDTR-GFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRL-- 133
Query: 128 RWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYY 187
L + P +DD T + I KRLE + + P++ YY
Sbjct: 134 ------------LQMSRSSLP-VDDTT------------KTIAKRLEAYYRASIPVIAYY 168
Query: 188 DNREVLDTFTGNTTDE 203
+ + L T E
Sbjct: 169 ETKTQLHKINAEGTPE 184
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45
+L+ ++ G PG GK T+ + +K+I GD+ R
Sbjct: 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45
+L+ ++ G PG GK T+ + +K+I GD+ R
Sbjct: 2 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 42
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 9 KAVIIGAPGCGKGTISSRIIDHFNV 33
KAV++G PG GK TI R+ V
Sbjct: 4 KAVLVGLPGSGKSTIGRRLAKALGV 28
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate And Adp At
2.15 Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate And Amppcp
At 2.85 Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate At 1.75
Angstrom Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 9 KAVIIGAPGCGKGTISSRIIDHFNV 33
KAV++G PG GK TI R+ V
Sbjct: 4 KAVLVGLPGSGKSTIGRRLAKALGV 28
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 43 RSHIAQNTTLGLK-AKEYMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDG 90
R HI +G++ +MNK +V D ++DLV+ EV+DL Y G
Sbjct: 117 REHILLARQVGVRYIVVFMNKVDMVDDRELLDLVEMEVRDLLNQYEFRG 165
>pdb|1RLO|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|C Chain C, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
pdb|1RLO|D Chain D, Phospho-Aspartyl Intermediate Analogue Of Ybiv From E.
Coli K12
Length = 271
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 163 DDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTTDEIWPRIYEHLNIRI 216
++ PEA + +KP+ DY + +VL F+ N DE P + + L++ +
Sbjct: 116 ENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVAL 169
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDG--FPRTYDQA-MALFKNHLSPNC 110
+MNK +V D ++DLV+ EV+DL Y G P A +AL + H +P
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 188
>pdb|1RLM|A Chain A, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|B Chain B, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|C Chain C, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLM|D Chain D, Crystal Structure Of Ybiv From Escherichia Coli K12
pdb|1RLT|A Chain A, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|B Chain B, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|C Chain C, Transition State Analogue Of Ybiv From E. Coli K12
pdb|1RLT|D Chain D, Transition State Analogue Of Ybiv From E. Coli K12
Length = 271
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 163 DDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTTDEIWPRIYEHLNIRI 216
++ PEA + +KP+ DY + +VL F+ N DE P + + L++ +
Sbjct: 116 ENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVAL 169
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDG--FPRTYDQA-MALFKNHLSPNC 110
+MNK +V D ++DLV+ EV+DL Y G P A +AL + H +P
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 188
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDG--FPRTYDQA-MALFKNHLSPNC 110
+MNK +V D ++DLV+ EV+DL Y G P A +AL + H +P
Sbjct: 135 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 189
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDG--FPRTYDQA-MALFKNHLSPNC 110
+MNK +V D ++DLV+ EV+DL Y G P A +AL + H +P
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 188
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDG--FPRTYDQA-MALFKNHLSPNC 110
+MNK +V D ++DLV+ EV+DL Y G P A +AL + H +P
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 188
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDG--FPRTYDQA-MALFKNHLSPNC 110
+MNK +V D ++DLV+ EV+DL Y G P A +AL + H +P
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 188
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDG--FPRTYDQA-MALFKNHLSPNC 110
+MNK +V D ++DLV+ EV+DL Y G P A +AL + H +P
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 188
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
Length = 489
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 40 DILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
D+ R+ + Q T LG++AK Y L P+DL
Sbjct: 116 DVERNLVKQLTILGIEAKGYWGSTLCHPEDL 146
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDG--FPRTYDQA-MALFKNHLSPNC 110
+MNK +V D ++DLV+ EV+DL Y G P A +AL + H +P
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKT 188
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDG--FPRTYDQA-MALFKNHLSPNC 110
+MNK +V D ++DLV+ EV+DL Y G P A +AL + H +P
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKT 188
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDG--FPRTYDQA-MALFKNHLSPNC 110
+MNK +V D ++DLV+ EV+DL Y G P A +AL + H +P
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKT 188
>pdb|1CLU|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHF 31
K V++GAPG GK ++ ++I +HF
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHF 28
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHF 31
K V++GAPG GK ++ ++I +HF
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHF 28
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 26.9 bits (58), Expect = 8.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 18 CGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKN 77
CG ++ +I+ + V+ G I S NT A E+ L+ DDL+
Sbjct: 410 CGISSVLDKIVPGYYVRRDTNGQIENSAAMNNT-----ASEHFMVDRLIVDDLL------ 458
Query: 78 EVKDLKCNYLLDGF 91
+ NY +DGF
Sbjct: 459 ---NWAVNYKVDGF 469
>pdb|2BMB|A Chain A, X-Ray Structure Of The Bifunctional 6-Hydroxymethyl-7,8-
Dihydroxypterin Pyrophosphokinase Dihydropteroate
Synthase From Saccharomyces Cerevisiae
Length = 545
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 26/150 (17%)
Query: 64 LLVPDDLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMH---INVPKEV 120
LL P +L+ K E ++L+ D PRT D + +F N + +++ +N+P
Sbjct: 81 LLTPSELLKLCKKIEYEELQRVKHFDNGPRTIDLDIVMFLNSAGEDIIVNEPDLNIPHPR 140
Query: 121 IIDR----------LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIK 170
+++R +S +HP + +P +D + ++L + D+ K
Sbjct: 141 MLERTFVLEPLCELISPVHLHPVTA-----------EPIVDHL--KQLYDKQHDEDTLWK 187
Query: 171 KRLETFDQTIKPLLDYYDNREVLDTFTGNT 200
+ ++P + LD FTG T
Sbjct: 188 LVPLPYRSGVEPRFLKFKTATKLDEFTGET 217
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 26.9 bits (58), Expect = 9.9, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 12 IIGAPGCGKGTISSRIIDHFNV 33
++G+ GCGK TI S ++ +++V
Sbjct: 449 LVGSSGCGKSTIISLLLRYYDV 470
>pdb|2Z72|A Chain A, New Structure Of Cold-Active Protein Tyrosine Phosphatase
At 1.1 Angstrom
Length = 342
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 27 IIDHFNVKHIATGDILRSHIAQNTTLGL 54
I+ HFNV HI G H +Q LGL
Sbjct: 273 ILQHFNVNHIVVG-----HTSQERVLGL 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,642,925
Number of Sequences: 62578
Number of extensions: 341972
Number of successful extensions: 1051
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 79
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)