Query psy6801
Match_columns 228
No_of_seqs 127 out of 1645
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 18:44:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 5.7E-44 1.2E-48 283.2 25.1 207 6-212 30-243 (244)
2 PRK14526 adenylate kinase; Pro 100.0 4.7E-41 1E-45 263.1 24.1 205 9-214 2-209 (211)
3 PLN02459 probable adenylate ki 100.0 9.2E-41 2E-45 265.9 24.6 205 7-214 29-251 (261)
4 TIGR01351 adk adenylate kinase 100.0 1.4E-40 3.1E-45 261.9 24.7 204 9-212 1-209 (210)
5 PRK00279 adk adenylate kinase; 100.0 1.6E-39 3.4E-44 256.8 25.1 207 8-214 1-214 (215)
6 PRK14529 adenylate kinase; Pro 100.0 1.3E-39 2.9E-44 255.5 22.3 205 8-212 1-222 (223)
7 PTZ00088 adenylate kinase 1; P 100.0 3.4E-39 7.4E-44 255.3 24.7 208 4-212 3-229 (229)
8 PRK14530 adenylate kinase; Pro 100.0 7E-38 1.5E-42 247.4 25.0 207 6-215 2-214 (215)
9 KOG3078|consensus 100.0 1.5E-36 3.2E-41 235.9 18.9 215 6-220 14-230 (235)
10 KOG3079|consensus 100.0 2.1E-35 4.6E-40 219.0 21.8 185 3-214 4-193 (195)
11 PRK13808 adenylate kinase; Pro 100.0 1E-33 2.3E-38 232.8 23.8 190 8-219 1-198 (333)
12 PLN02842 nucleotide kinase 100.0 1.1E-33 2.4E-38 242.9 22.8 204 11-220 1-208 (505)
13 cd01428 ADK Adenylate kinase ( 100.0 4.9E-33 1.1E-37 216.4 23.1 188 9-204 1-194 (194)
14 PRK14531 adenylate kinase; Pro 100.0 6.6E-33 1.4E-37 213.8 22.7 175 7-212 2-182 (183)
15 PRK14528 adenylate kinase; Pro 100.0 7.9E-33 1.7E-37 213.6 22.7 178 8-212 2-186 (186)
16 PRK14532 adenylate kinase; Pro 100.0 5.9E-32 1.3E-36 209.4 23.6 178 9-213 2-186 (188)
17 PRK14527 adenylate kinase; Pro 100.0 2.6E-31 5.6E-36 206.3 23.3 180 6-212 5-190 (191)
18 PLN02200 adenylate kinase fami 100.0 3.3E-31 7.1E-36 211.0 23.7 183 6-217 42-227 (234)
19 PRK02496 adk adenylate kinase; 100.0 7.6E-31 1.6E-35 202.5 23.2 176 7-213 1-183 (184)
20 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 8.7E-31 1.9E-35 202.0 23.3 177 9-212 1-182 (183)
21 PF00406 ADK: Adenylate kinase 100.0 3.1E-29 6.7E-34 187.6 18.2 144 12-191 1-150 (151)
22 TIGR01360 aden_kin_iso1 adenyl 100.0 5.5E-28 1.2E-32 187.0 23.7 181 7-214 3-187 (188)
23 COG0563 Adk Adenylate kinase a 100.0 1.3E-28 2.7E-33 187.8 18.8 170 8-212 1-177 (178)
24 PRK13974 thymidylate kinase; P 99.8 4.6E-18 1E-22 134.0 15.3 174 6-216 2-208 (212)
25 PRK01184 hypothetical protein; 99.8 4.1E-17 8.9E-22 125.8 19.8 173 7-217 1-181 (184)
26 PRK13973 thymidylate kinase; P 99.8 2.3E-17 5E-22 130.1 18.6 179 5-217 1-209 (213)
27 PRK06217 hypothetical protein; 99.8 9.4E-18 2E-22 129.3 15.1 171 7-214 1-179 (183)
28 PRK03839 putative kinase; Prov 99.8 2.4E-17 5.3E-22 126.7 15.9 150 9-216 2-155 (180)
29 COG0125 Tmk Thymidylate kinase 99.8 4.2E-17 9.1E-22 126.9 15.7 177 5-217 1-206 (208)
30 PRK13949 shikimate kinase; Pro 99.7 1E-16 2.3E-21 121.7 15.8 109 8-128 2-114 (169)
31 COG0703 AroK Shikimate kinase 99.7 1.9E-16 4.2E-21 118.4 15.6 161 7-216 2-170 (172)
32 PRK13975 thymidylate kinase; P 99.7 7.1E-16 1.5E-20 120.0 18.4 170 7-219 2-195 (196)
33 COG1102 Cmk Cytidylate kinase 99.7 1.6E-15 3.5E-20 110.9 18.3 166 8-216 1-174 (179)
34 PRK08356 hypothetical protein; 99.7 2.5E-16 5.5E-21 122.5 13.6 115 8-128 6-135 (195)
35 PLN02924 thymidylate kinase 99.7 9.1E-16 2E-20 121.1 16.4 169 5-217 14-206 (220)
36 PRK00698 tmk thymidylate kinas 99.7 1.7E-15 3.7E-20 118.6 14.9 174 6-216 2-204 (205)
37 PRK00081 coaE dephospho-CoA ki 99.7 1.4E-15 3E-20 118.2 13.9 162 7-214 2-193 (194)
38 PRK08118 topology modulation p 99.7 5.8E-16 1.3E-20 117.4 10.5 100 7-130 1-101 (167)
39 TIGR00041 DTMP_kinase thymidyl 99.7 2.3E-15 5E-20 117.0 13.7 116 6-128 2-148 (195)
40 PRK08233 hypothetical protein; 99.6 2.5E-15 5.5E-20 115.4 12.3 169 5-215 1-178 (182)
41 PRK14734 coaE dephospho-CoA ki 99.6 9.5E-15 2.1E-19 113.9 15.4 162 8-216 2-196 (200)
42 PRK14730 coaE dephospho-CoA ki 99.6 6.5E-15 1.4E-19 114.4 14.2 161 8-213 2-193 (195)
43 PHA02530 pseT polynucleotide k 99.6 1.9E-15 4.2E-20 125.2 11.4 160 7-201 2-168 (300)
44 cd01672 TMPK Thymidine monopho 99.6 5.1E-14 1.1E-18 109.5 18.8 166 8-213 1-199 (200)
45 PRK03731 aroL shikimate kinase 99.6 3.8E-14 8.3E-19 107.9 16.3 107 8-128 3-114 (171)
46 PRK13947 shikimate kinase; Pro 99.6 3.7E-14 8E-19 108.0 16.1 109 8-128 2-114 (171)
47 PRK04040 adenylate kinase; Pro 99.6 6.2E-14 1.4E-18 108.2 16.8 117 7-127 2-130 (188)
48 PRK13948 shikimate kinase; Pro 99.6 3.4E-14 7.4E-19 108.8 14.9 109 7-127 10-122 (182)
49 COG1936 Predicted nucleotide k 99.6 3.4E-14 7.3E-19 105.4 14.1 153 8-214 1-156 (180)
50 TIGR02173 cyt_kin_arch cytidyl 99.6 2E-13 4.4E-18 103.7 18.5 111 8-128 1-112 (171)
51 PRK13946 shikimate kinase; Pro 99.6 1.5E-13 3.2E-18 106.0 17.5 114 5-128 8-123 (184)
52 PRK04182 cytidylate kinase; Pr 99.6 6.9E-14 1.5E-18 107.2 15.5 110 8-128 1-112 (180)
53 PRK00625 shikimate kinase; Pro 99.6 5.7E-14 1.2E-18 106.9 14.1 110 9-128 2-116 (173)
54 PF02223 Thymidylate_kin: Thym 99.6 5.2E-15 1.1E-19 114.3 8.3 159 12-208 1-186 (186)
55 COG0237 CoaE Dephospho-CoA kin 99.6 1E-13 2.2E-18 107.6 15.1 165 7-218 2-196 (201)
56 PLN02422 dephospho-CoA kinase 99.6 6.2E-14 1.4E-18 110.9 14.1 161 8-216 2-196 (232)
57 PRK07933 thymidylate kinase; V 99.6 5.6E-14 1.2E-18 110.6 13.4 174 8-213 1-212 (213)
58 PRK00131 aroK shikimate kinase 99.6 1.9E-13 4.2E-18 104.1 15.5 114 5-128 2-117 (175)
59 PRK06762 hypothetical protein; 99.6 1.5E-13 3.2E-18 104.2 14.4 111 6-128 1-116 (166)
60 KOG3347|consensus 99.6 1.4E-13 3E-18 99.4 13.2 107 5-128 5-113 (176)
61 PRK14733 coaE dephospho-CoA ki 99.6 2.8E-13 6.1E-18 105.4 16.1 163 5-215 4-199 (204)
62 PRK14731 coaE dephospho-CoA ki 99.6 1.1E-13 2.3E-18 108.8 13.4 166 6-216 4-204 (208)
63 PRK05057 aroK shikimate kinase 99.6 2.6E-13 5.7E-18 103.4 15.0 113 5-128 2-117 (172)
64 PRK13976 thymidylate kinase; P 99.6 2E-13 4.2E-18 107.1 14.5 170 8-218 1-205 (209)
65 cd02030 NDUO42 NADH:Ubiquinone 99.6 2.2E-13 4.8E-18 107.9 14.9 28 9-36 1-28 (219)
66 PRK12339 2-phosphoglycerate ki 99.5 3.2E-13 6.9E-18 104.8 14.4 175 5-212 1-195 (197)
67 TIGR01313 therm_gnt_kin carboh 99.5 5.8E-13 1.3E-17 100.6 15.4 153 10-213 1-162 (163)
68 TIGR00152 dephospho-CoA kinase 99.5 2.4E-13 5.3E-18 105.1 13.4 155 9-209 1-187 (188)
69 PTZ00451 dephospho-CoA kinase; 99.5 4E-13 8.7E-18 107.3 13.9 160 8-214 2-207 (244)
70 PLN02199 shikimate kinase 99.5 2.4E-12 5.2E-17 104.4 17.6 109 7-127 102-214 (303)
71 cd02022 DPCK Dephospho-coenzym 99.5 4.7E-13 1E-17 102.7 13.0 113 9-128 1-142 (179)
72 KOG3327|consensus 99.5 3.7E-13 7.9E-18 100.6 11.7 173 5-217 3-198 (208)
73 PF13671 AAA_33: AAA domain; P 99.5 8.4E-14 1.8E-18 102.8 8.4 113 9-129 1-119 (143)
74 PRK14732 coaE dephospho-CoA ki 99.5 4E-13 8.6E-18 104.4 12.6 163 9-217 1-193 (196)
75 TIGR03574 selen_PSTK L-seryl-t 99.5 7.4E-13 1.6E-17 106.9 14.2 161 9-217 1-172 (249)
76 PRK07261 topology modulation p 99.5 1.3E-13 2.7E-18 105.1 8.9 101 8-130 1-101 (171)
77 PRK03333 coaE dephospho-CoA ki 99.5 5.2E-13 1.1E-17 114.2 13.0 166 8-218 2-196 (395)
78 COG3265 GntK Gluconate kinase 99.5 9.8E-13 2.1E-17 95.0 12.2 151 13-214 1-159 (161)
79 PRK08154 anaerobic benzoate ca 99.5 8.6E-13 1.9E-17 109.6 12.2 112 6-128 132-247 (309)
80 COG1428 Deoxynucleoside kinase 99.5 1.7E-12 3.7E-17 99.5 12.7 30 7-36 4-33 (216)
81 KOG3354|consensus 99.5 2.8E-12 6E-17 93.3 12.8 111 9-129 14-139 (191)
82 PF01121 CoaE: Dephospho-CoA k 99.4 7.8E-13 1.7E-17 101.2 10.1 114 8-128 1-143 (180)
83 cd00464 SK Shikimate kinase (S 99.4 5E-12 1.1E-16 94.4 14.0 106 10-129 2-113 (154)
84 COG0283 Cmk Cytidylate kinase 99.4 6.9E-12 1.5E-16 96.5 14.3 38 8-45 5-42 (222)
85 KOG3877|consensus 99.4 1.4E-11 3E-16 97.7 16.3 171 7-211 71-294 (393)
86 PRK14021 bifunctional shikimat 99.4 9.2E-12 2E-16 110.7 17.1 114 7-128 6-123 (542)
87 PRK10078 ribose 1,5-bisphospho 99.4 9.4E-12 2E-16 96.1 14.7 160 8-214 3-176 (186)
88 smart00072 GuKc Guanylate kina 99.4 1.1E-12 2.4E-17 101.2 9.0 163 7-214 2-182 (184)
89 KOG3220|consensus 99.4 1.9E-11 4.2E-16 92.7 15.3 163 7-214 1-194 (225)
90 cd02020 CMPK Cytidine monophos 99.4 2.4E-12 5.3E-17 95.2 10.2 103 9-128 1-103 (147)
91 PRK09825 idnK D-gluconate kina 99.4 9.9E-12 2.2E-16 95.0 13.6 163 7-219 3-173 (176)
92 cd00227 CPT Chloramphenicol (C 99.4 2.6E-11 5.5E-16 92.8 15.9 118 7-128 2-131 (175)
93 COG4088 Predicted nucleotide k 99.4 6.4E-12 1.4E-16 95.8 11.8 164 7-213 1-172 (261)
94 cd01673 dNK Deoxyribonucleosid 99.4 1.1E-11 2.4E-16 96.2 13.3 112 9-128 1-145 (193)
95 PRK12338 hypothetical protein; 99.4 2.9E-11 6.3E-16 99.6 15.8 182 4-217 1-207 (319)
96 PRK05541 adenylylsulfate kinas 99.4 1.9E-11 4.2E-16 93.5 13.6 116 1-127 1-121 (176)
97 PRK06547 hypothetical protein; 99.4 2.4E-12 5.1E-17 98.0 8.3 121 5-128 13-138 (172)
98 PF01202 SKI: Shikimate kinase 99.4 1.3E-11 2.9E-16 92.7 12.2 101 16-128 1-105 (158)
99 PRK00023 cmk cytidylate kinase 99.4 2.4E-11 5.3E-16 96.4 14.1 41 4-44 1-41 (225)
100 PRK14738 gmk guanylate kinase; 99.4 2.8E-12 6.1E-17 100.6 8.6 167 6-216 12-196 (206)
101 cd02021 GntK Gluconate kinase 99.3 6.2E-11 1.3E-15 88.2 14.4 110 9-129 1-119 (150)
102 TIGR02322 phosphon_PhnN phosph 99.3 6.5E-11 1.4E-15 90.8 14.2 161 8-214 2-178 (179)
103 TIGR00017 cmk cytidylate kinas 99.3 3E-11 6.5E-16 95.3 12.0 39 7-45 2-40 (217)
104 PRK13477 bifunctional pantoate 99.3 8.7E-11 1.9E-15 102.8 15.8 40 6-45 283-322 (512)
105 PF13207 AAA_17: AAA domain; P 99.3 1.6E-12 3.5E-17 93.1 4.1 34 9-42 1-34 (121)
106 PTZ00301 uridine kinase; Provi 99.3 1.9E-11 4.1E-16 95.8 8.7 119 5-130 1-149 (210)
107 PRK11545 gntK gluconate kinase 99.3 1.4E-10 3.1E-15 87.6 13.1 104 13-128 1-111 (163)
108 PRK13951 bifunctional shikimat 99.3 1.8E-10 3.8E-15 101.1 14.6 107 9-128 2-112 (488)
109 PRK05480 uridine/cytidine kina 99.2 1.5E-10 3.3E-15 90.9 12.6 38 6-43 5-45 (209)
110 PRK00300 gmk guanylate kinase; 99.2 1.7E-10 3.8E-15 90.3 12.1 166 6-215 4-185 (205)
111 COG0572 Udk Uridine kinase [Nu 99.2 8E-11 1.7E-15 91.5 9.9 118 7-130 8-150 (218)
112 PRK11860 bifunctional 3-phosph 99.2 4.6E-10 9.9E-15 102.3 16.0 39 7-45 442-480 (661)
113 COG2019 AdkA Archaeal adenylat 99.2 6.1E-09 1.3E-13 77.0 18.5 112 7-127 4-129 (189)
114 TIGR03263 guanyl_kin guanylate 99.2 1.3E-10 2.9E-15 89.0 10.2 162 8-213 2-179 (180)
115 PRK09518 bifunctional cytidyla 99.2 7.4E-11 1.6E-15 108.3 9.9 38 8-45 2-39 (712)
116 PRK14737 gmk guanylate kinase; 99.2 2.8E-10 6.1E-15 87.7 10.6 163 6-214 3-184 (186)
117 KOG3308|consensus 99.1 5.9E-10 1.3E-14 84.7 10.7 178 5-219 2-209 (225)
118 TIGR00235 udk uridine kinase. 99.1 2.8E-10 6E-15 89.4 9.0 118 7-129 6-147 (207)
119 PF08433 KTI12: Chromatin asso 99.1 8.8E-10 1.9E-14 89.6 11.9 111 7-128 1-119 (270)
120 PRK07667 uridine kinase; Provi 99.1 2.7E-10 5.8E-15 88.5 8.4 38 8-45 18-60 (193)
121 PF13238 AAA_18: AAA domain; P 99.1 1.2E-10 2.7E-15 83.9 5.9 105 10-128 1-112 (129)
122 PRK12269 bifunctional cytidyla 99.1 1.6E-09 3.5E-14 100.2 14.5 41 5-45 32-72 (863)
123 PRK06696 uridine kinase; Valid 99.1 5.3E-10 1.2E-14 88.8 9.6 38 6-43 21-63 (223)
124 cd02024 NRK1 Nicotinamide ribo 99.1 4.4E-10 9.6E-15 86.4 8.0 36 9-44 1-37 (187)
125 COG0529 CysC Adenylylsulfate k 99.1 3.6E-09 7.8E-14 79.0 12.4 109 6-127 22-140 (197)
126 COG0194 Gmk Guanylate kinase [ 99.1 4.3E-09 9.3E-14 79.5 12.1 164 6-215 3-183 (191)
127 PRK00889 adenylylsulfate kinas 99.0 4.9E-09 1.1E-13 80.1 12.3 107 7-125 4-117 (175)
128 PRK04220 2-phosphoglycerate ki 99.0 1.2E-08 2.6E-13 83.5 15.0 121 5-129 90-236 (301)
129 TIGR01663 PNK-3'Pase polynucle 99.0 1.6E-09 3.5E-14 95.3 10.4 99 6-129 368-469 (526)
130 cd02023 UMPK Uridine monophosp 99.0 3.9E-09 8.4E-14 82.2 11.5 35 9-43 1-38 (198)
131 PRK07429 phosphoribulokinase; 99.0 1.1E-09 2.3E-14 91.5 8.7 42 1-42 1-46 (327)
132 PF01583 APS_kinase: Adenylyls 99.0 3E-09 6.5E-14 79.1 9.8 109 7-126 2-118 (156)
133 PRK05537 bifunctional sulfate 99.0 2.3E-09 4.9E-14 95.7 10.8 111 6-126 391-510 (568)
134 TIGR03575 selen_PSTK_euk L-ser 99.0 3E-09 6.4E-14 88.9 10.2 34 10-43 2-41 (340)
135 TIGR00455 apsK adenylylsulfate 99.0 7.4E-09 1.6E-13 79.8 11.5 109 6-124 17-132 (184)
136 cd02025 PanK Pantothenate kina 99.0 2.5E-09 5.4E-14 84.7 8.7 34 9-42 1-41 (220)
137 cd02027 APSK Adenosine 5'-phos 99.0 1.4E-08 3.1E-13 75.5 11.9 108 9-127 1-116 (149)
138 PRK05416 glmZ(sRNA)-inactivati 99.0 2.9E-08 6.3E-13 81.4 14.7 94 6-128 5-106 (288)
139 PRK12337 2-phosphoglycerate ki 99.0 5.9E-08 1.3E-12 83.6 16.7 41 6-47 254-295 (475)
140 PLN02348 phosphoribulokinase 98.9 1.1E-09 2.3E-14 92.4 5.6 37 6-42 48-104 (395)
141 PHA03132 thymidine kinase; Pro 98.9 8.6E-09 1.9E-13 91.1 11.2 122 7-128 257-422 (580)
142 PF00485 PRK: Phosphoribulokin 98.9 2.3E-09 5E-14 83.3 6.4 24 9-32 1-24 (194)
143 PF07931 CPT: Chloramphenicol 98.9 2E-08 4.3E-13 76.3 10.9 112 8-128 2-130 (174)
144 COG0645 Predicted kinase [Gene 98.9 1.5E-08 3.2E-13 75.4 9.7 115 8-129 2-125 (170)
145 PRK03846 adenylylsulfate kinas 98.9 3.4E-08 7.3E-13 77.0 12.3 107 6-124 23-138 (198)
146 COG4639 Predicted kinase [Gene 98.9 5.9E-08 1.3E-12 71.1 12.1 112 8-128 3-117 (168)
147 PF01591 6PF2K: 6-phosphofruct 98.9 2E-08 4.3E-13 79.1 10.3 165 7-200 12-196 (222)
148 PF03668 ATP_bind_2: P-loop AT 98.9 9.5E-08 2E-12 77.3 14.2 98 7-133 1-108 (284)
149 COG2074 2-phosphoglycerate kin 98.9 7.6E-08 1.6E-12 75.9 12.6 179 3-216 85-289 (299)
150 PRK05506 bifunctional sulfate 98.8 3.3E-08 7.1E-13 89.9 11.6 108 6-125 459-575 (632)
151 PRK15453 phosphoribulokinase; 98.8 5.8E-09 1.3E-13 84.4 5.3 39 5-43 3-46 (290)
152 COG3709 Uncharacterized compon 98.8 1.2E-07 2.5E-12 70.0 10.9 160 7-216 5-184 (192)
153 PF06414 Zeta_toxin: Zeta toxi 98.8 1.8E-08 3.9E-13 78.6 7.3 119 6-130 14-143 (199)
154 cd02026 PRK Phosphoribulokinas 98.8 5.8E-08 1.3E-12 79.3 10.4 34 9-42 1-37 (273)
155 cd02019 NK Nucleoside/nucleoti 98.8 2.7E-08 5.9E-13 64.0 6.7 23 9-31 1-23 (69)
156 PRK05439 pantothenate kinase; 98.8 4.1E-08 8.9E-13 81.1 8.5 38 6-43 85-129 (311)
157 PRK09270 nucleoside triphospha 98.7 5.8E-08 1.3E-12 77.4 8.9 27 6-32 32-58 (229)
158 cd02028 UMPK_like Uridine mono 98.7 2.7E-08 5.8E-13 76.3 6.6 36 9-44 1-41 (179)
159 PF00625 Guanylate_kin: Guanyl 98.7 5.9E-08 1.3E-12 74.7 8.0 163 7-214 2-182 (183)
160 TIGR00554 panK_bact pantothena 98.7 2.1E-08 4.5E-13 82.2 5.0 37 6-42 61-104 (290)
161 PHA00729 NTP-binding motif con 98.7 1.9E-07 4E-12 73.6 9.3 106 7-129 17-140 (226)
162 cd02029 PRK_like Phosphoribulo 98.6 1.7E-07 3.7E-12 75.4 7.8 35 9-43 1-40 (277)
163 PLN02165 adenylate isopentenyl 98.6 6.3E-07 1.4E-11 74.5 10.8 36 6-41 42-77 (334)
164 COG1660 Predicted P-loop-conta 98.6 3.1E-06 6.8E-11 67.1 13.9 143 8-214 2-157 (286)
165 PLN02772 guanylate kinase 98.6 5.9E-07 1.3E-11 76.0 10.4 165 8-213 136-317 (398)
166 PLN02318 phosphoribulokinase/u 98.4 9.9E-07 2.1E-11 78.1 8.9 36 7-42 65-101 (656)
167 PF13189 Cytidylate_kin2: Cyti 98.4 3.4E-06 7.3E-11 64.7 9.7 113 9-128 1-134 (179)
168 COG4185 Uncharacterized protei 98.3 2.7E-05 5.8E-10 57.6 11.9 111 7-128 2-117 (187)
169 COG1072 CoaA Panthothenate kin 98.3 8.1E-07 1.8E-11 71.2 4.4 27 5-31 80-106 (283)
170 PF01745 IPT: Isopentenyl tran 98.3 4.1E-06 8.9E-11 64.9 7.5 118 7-128 1-138 (233)
171 KOG0635|consensus 98.3 3.4E-05 7.3E-10 56.5 11.6 117 6-136 30-165 (207)
172 PRK00091 miaA tRNA delta(2)-is 98.2 1.1E-06 2.4E-11 72.8 4.1 37 5-41 2-38 (307)
173 PHA03136 thymidine kinase; Pro 98.2 6E-05 1.3E-09 63.5 14.3 23 106-128 190-212 (378)
174 PF00004 AAA: ATPase family as 98.2 1.4E-06 3E-11 62.8 3.9 29 10-38 1-29 (132)
175 TIGR03707 PPK2_P_aer polyphosp 98.2 0.00013 2.9E-09 57.8 15.0 184 6-218 30-223 (230)
176 PRK05800 cobU adenosylcobinami 98.2 2.3E-06 4.9E-11 65.0 4.1 33 8-40 2-36 (170)
177 KOG3062|consensus 98.1 1.3E-05 2.9E-10 62.3 7.6 111 7-128 1-122 (281)
178 COG1618 Predicted nucleotide k 98.1 3.1E-06 6.7E-11 62.6 3.4 28 6-33 4-31 (179)
179 PRK06761 hypothetical protein; 98.1 3.1E-06 6.7E-11 69.1 3.8 30 7-36 3-32 (282)
180 PF05191 ADK_lid: Adenylate ki 98.1 8.3E-07 1.8E-11 48.9 0.3 35 128-162 1-35 (36)
181 KOG0730|consensus 98.1 3.1E-05 6.8E-10 68.8 10.0 32 7-38 468-499 (693)
182 CHL00195 ycf46 Ycf46; Provisio 98.1 3.9E-05 8.4E-10 67.6 10.7 33 6-38 258-290 (489)
183 TIGR03709 PPK2_rel_1 polyphosp 98.0 0.00035 7.5E-09 56.6 14.7 169 6-216 55-250 (264)
184 KOG4235|consensus 98.0 0.00027 5.8E-09 54.0 13.1 26 106-131 152-177 (244)
185 KOG0738|consensus 98.0 6.5E-05 1.4E-09 63.1 10.3 30 9-38 247-276 (491)
186 PF13173 AAA_14: AAA domain 98.0 7.2E-05 1.6E-09 54.0 9.4 95 8-124 3-104 (128)
187 PF13521 AAA_28: AAA domain; P 98.0 4.2E-06 9.2E-11 63.0 3.0 35 9-46 1-35 (163)
188 KOG0733|consensus 98.0 4.6E-05 9.9E-10 67.4 9.5 117 6-128 221-372 (802)
189 PTZ00322 6-phosphofructo-2-kin 98.0 3.1E-05 6.7E-10 71.0 8.9 38 6-43 214-256 (664)
190 PLN02840 tRNA dimethylallyltra 98.0 6.2E-06 1.3E-10 70.7 3.9 36 5-40 19-54 (421)
191 PF05496 RuvB_N: Holliday junc 98.0 7.7E-06 1.7E-10 64.2 3.8 29 8-36 51-79 (233)
192 PRK09169 hypothetical protein; 97.9 0.00021 4.6E-09 71.1 14.0 108 7-128 2110-2220(2316)
193 PRK12724 flagellar biosynthesi 97.9 9.1E-05 2E-09 63.6 9.9 90 7-103 223-323 (432)
194 TIGR00174 miaA tRNA isopenteny 97.9 1E-05 2.2E-10 66.3 3.9 33 9-41 1-33 (287)
195 TIGR03708 poly_P_AMP_trns poly 97.9 0.00039 8.5E-09 61.1 13.6 183 6-216 39-234 (493)
196 TIGR00390 hslU ATP-dependent p 97.9 1.2E-05 2.7E-10 68.7 4.2 34 6-39 46-79 (441)
197 COG0324 MiaA tRNA delta(2)-iso 97.9 1.4E-05 3.1E-10 65.7 4.3 36 6-41 2-37 (308)
198 COG1223 Predicted ATPase (AAA+ 97.9 9.5E-05 2.1E-09 59.1 8.4 34 5-38 149-182 (368)
199 COG3172 NadR Predicted ATPase/ 97.9 0.00026 5.6E-09 52.5 10.1 30 6-35 7-36 (187)
200 PRK14974 cell division protein 97.9 7.8E-05 1.7E-09 62.6 8.4 25 7-31 140-164 (336)
201 KOG0744|consensus 97.9 0.00015 3.2E-09 59.7 9.7 27 8-34 178-204 (423)
202 PHA02575 1 deoxynucleoside mon 97.9 2.4E-05 5.2E-10 61.4 4.8 39 8-47 1-40 (227)
203 PRK05201 hslU ATP-dependent pr 97.8 1.5E-05 3.2E-10 68.3 3.8 34 7-40 50-83 (443)
204 PF07728 AAA_5: AAA domain (dy 97.8 2E-05 4.3E-10 57.6 3.9 28 10-37 2-29 (139)
205 smart00382 AAA ATPases associa 97.8 1.7E-05 3.7E-10 57.0 3.3 28 7-34 2-29 (148)
206 PLN02748 tRNA dimethylallyltra 97.8 1.9E-05 4.2E-10 68.8 4.0 35 6-40 21-55 (468)
207 PF03976 PPK2: Polyphosphate k 97.8 8.4E-05 1.8E-09 59.0 7.2 81 110-216 138-225 (228)
208 PF08303 tRNA_lig_kinase: tRNA 97.8 0.00023 4.9E-09 53.1 8.6 32 10-41 2-34 (168)
209 PRK06620 hypothetical protein; 97.8 0.0001 2.2E-09 58.2 7.2 30 8-37 45-74 (214)
210 KOG0707|consensus 97.7 0.00036 7.8E-09 54.7 9.6 26 8-33 38-63 (231)
211 PF13401 AAA_22: AAA domain; P 97.7 0.00014 3E-09 52.4 6.8 107 8-117 5-124 (131)
212 COG2256 MGS1 ATPase related to 97.7 0.00013 2.8E-09 61.6 7.4 31 8-38 49-79 (436)
213 PRK08099 bifunctional DNA-bind 97.7 3.4E-05 7.4E-10 66.4 4.1 32 6-37 218-249 (399)
214 PHA03135 thymidine kinase; Pro 97.7 0.0018 3.8E-08 54.1 13.8 23 8-30 11-33 (343)
215 PRK09087 hypothetical protein; 97.7 4.4E-05 9.6E-10 60.7 4.3 35 8-42 45-79 (226)
216 PRK00771 signal recognition pa 97.7 0.00011 2.3E-09 64.0 6.9 34 6-39 94-132 (437)
217 KOG0731|consensus 97.7 0.00034 7.4E-09 63.9 10.2 119 5-126 342-491 (774)
218 PRK10867 signal recognition pa 97.7 0.00023 5.1E-09 61.7 8.7 33 7-39 100-138 (433)
219 PRK10751 molybdopterin-guanine 97.7 4.3E-05 9.3E-10 58.0 3.7 28 5-32 4-31 (173)
220 TIGR01425 SRP54_euk signal rec 97.7 0.00022 4.7E-09 61.7 8.5 33 7-39 100-137 (429)
221 PRK14729 miaA tRNA delta(2)-is 97.7 5.2E-05 1.1E-09 62.6 4.4 35 6-41 3-37 (300)
222 cd00071 GMPK Guanosine monopho 97.7 3.7E-05 8.1E-10 56.3 3.1 23 10-32 2-24 (137)
223 smart00763 AAA_PrkA PrkA AAA d 97.6 3.9E-05 8.5E-10 64.5 3.4 27 7-33 78-104 (361)
224 PF03029 ATP_bind_1: Conserved 97.6 3.9E-05 8.5E-10 61.5 3.0 21 12-32 1-21 (238)
225 PF10662 PduV-EutP: Ethanolami 97.6 4.3E-05 9.3E-10 56.0 3.0 24 7-30 1-24 (143)
226 PLN00020 ribulose bisphosphate 97.6 5.5E-05 1.2E-09 63.7 3.9 38 5-42 146-185 (413)
227 TIGR01650 PD_CobS cobaltochela 97.6 5.2E-05 1.1E-09 63.1 3.7 32 7-38 64-95 (327)
228 PF00448 SRP54: SRP54-type pro 97.6 5.3E-05 1.1E-09 58.9 3.5 34 7-40 1-39 (196)
229 TIGR00959 ffh signal recogniti 97.6 0.0003 6.5E-09 61.0 8.3 33 7-39 99-137 (428)
230 PLN02796 D-glycerate 3-kinase 97.6 5.4E-05 1.2E-09 63.4 3.6 37 6-42 99-140 (347)
231 TIGR01243 CDC48 AAA family ATP 97.6 0.00026 5.6E-09 65.9 8.5 32 7-38 487-518 (733)
232 COG0464 SpoVK ATPases of the A 97.6 0.00071 1.5E-08 60.1 10.8 32 7-38 276-307 (494)
233 TIGR00064 ftsY signal recognit 97.6 0.00026 5.7E-09 57.9 7.4 33 7-39 72-109 (272)
234 TIGR01526 nadR_NMN_Atrans nico 97.6 6.9E-05 1.5E-09 62.8 4.1 31 7-37 162-192 (325)
235 TIGR00150 HI0065_YjeE ATPase, 97.6 7.7E-05 1.7E-09 54.1 3.7 28 7-34 22-49 (133)
236 PF00910 RNA_helicase: RNA hel 97.6 6.3E-05 1.4E-09 52.6 2.9 23 10-32 1-23 (107)
237 PF03266 NTPase_1: NTPase; In 97.6 9E-05 1.9E-09 56.2 3.9 23 9-31 1-23 (168)
238 COG3896 Chloramphenicol 3-O-ph 97.5 0.0032 6.9E-08 46.7 11.6 124 4-128 20-160 (205)
239 PRK05342 clpX ATP-dependent pr 97.5 7.9E-05 1.7E-09 64.4 3.8 31 8-38 109-139 (412)
240 PRK12723 flagellar biosynthesi 97.5 0.00072 1.6E-08 57.9 9.5 26 6-31 173-198 (388)
241 cd00009 AAA The AAA+ (ATPases 97.5 0.00011 2.5E-09 53.2 4.1 32 7-38 19-53 (151)
242 TIGR02881 spore_V_K stage V sp 97.5 9.6E-05 2.1E-09 60.1 4.0 24 8-31 43-66 (261)
243 PHA03134 thymidine kinase; Pro 97.5 0.01 2.2E-07 49.5 15.7 24 7-30 13-36 (340)
244 PRK03992 proteasome-activating 97.5 9.4E-05 2E-09 63.6 4.0 32 7-38 165-196 (389)
245 TIGR02640 gas_vesic_GvpN gas v 97.5 9.8E-05 2.1E-09 60.1 3.9 29 8-36 22-50 (262)
246 PF07726 AAA_3: ATPase family 97.5 6.3E-05 1.4E-09 53.9 2.3 29 10-38 2-30 (131)
247 KOG0737|consensus 97.5 0.00036 7.7E-09 58.3 6.8 32 7-38 127-158 (386)
248 COG1419 FlhF Flagellar GTP-bin 97.5 0.00059 1.3E-08 58.0 8.2 35 7-41 203-244 (407)
249 TIGR03708 poly_P_AMP_trns poly 97.5 0.0058 1.3E-07 53.8 14.6 166 6-215 298-492 (493)
250 COG0466 Lon ATP-dependent Lon 97.5 0.00011 2.3E-09 66.3 3.8 34 4-37 347-380 (782)
251 PF13245 AAA_19: Part of AAA d 97.5 0.00014 3.1E-09 47.5 3.5 24 8-31 11-35 (76)
252 PLN03046 D-glycerate 3-kinase; 97.5 9.9E-05 2.1E-09 63.2 3.4 37 6-42 211-252 (460)
253 PRK10416 signal recognition pa 97.5 0.00063 1.4E-08 56.9 8.2 25 7-31 114-138 (318)
254 TIGR01242 26Sp45 26S proteasom 97.4 0.00014 3E-09 62.1 4.1 32 7-38 156-187 (364)
255 TIGR00382 clpX endopeptidase C 97.4 0.00013 2.8E-09 62.9 3.8 31 8-38 117-147 (413)
256 PTZ00454 26S protease regulato 97.4 0.00015 3.2E-09 62.5 4.1 33 6-38 178-210 (398)
257 KOG0733|consensus 97.4 0.0017 3.7E-08 57.8 10.6 32 7-38 545-576 (802)
258 COG1126 GlnQ ABC-type polar am 97.4 0.00011 2.4E-09 57.1 2.9 23 6-28 27-49 (240)
259 CHL00181 cbbX CbbX; Provisiona 97.4 0.00019 4.2E-09 59.1 4.5 25 7-31 59-83 (287)
260 TIGR01223 Pmev_kin_anim phosph 97.4 0.003 6.6E-08 47.7 10.4 116 9-127 1-134 (182)
261 COG1222 RPT1 ATP-dependent 26S 97.4 0.0011 2.3E-08 55.4 8.7 42 8-49 186-229 (406)
262 KOG1384|consensus 97.4 0.0007 1.5E-08 55.8 7.4 35 7-41 7-41 (348)
263 KOG2004|consensus 97.4 0.00015 3.3E-09 65.3 3.7 34 4-37 435-468 (906)
264 PRK13768 GTPase; Provisional 97.4 0.00019 4E-09 58.2 4.0 25 7-31 2-26 (253)
265 COG1219 ClpX ATP-dependent pro 97.4 0.00017 3.7E-09 59.2 3.6 30 9-38 99-128 (408)
266 PF07724 AAA_2: AAA domain (Cd 97.4 0.00022 4.8E-09 54.2 4.0 25 9-33 5-29 (171)
267 PRK11889 flhF flagellar biosyn 97.4 0.0012 2.6E-08 56.4 8.7 33 7-39 241-278 (436)
268 COG2255 RuvB Holliday junction 97.4 0.00017 3.8E-09 58.3 3.5 27 9-35 54-80 (332)
269 COG1220 HslU ATP-dependent pro 97.4 0.00021 4.6E-09 59.2 3.9 32 6-37 49-80 (444)
270 PF05729 NACHT: NACHT domain 97.4 0.00018 4E-09 53.6 3.4 23 9-31 2-24 (166)
271 KOG0735|consensus 97.3 0.0013 2.9E-08 59.4 8.9 39 9-47 703-743 (952)
272 KOG0739|consensus 97.3 0.0035 7.6E-08 51.3 10.6 38 9-46 168-207 (439)
273 COG0378 HypB Ni2+-binding GTPa 97.3 0.00017 3.7E-09 55.2 2.9 34 5-38 10-48 (202)
274 PTZ00361 26 proteosome regulat 97.3 0.00023 5.1E-09 61.9 4.1 32 7-38 217-248 (438)
275 cd03116 MobB Molybdenum is an 97.3 0.00023 5E-09 53.4 3.5 26 7-32 1-26 (159)
276 PHA02244 ATPase-like protein 97.3 0.00024 5.1E-09 60.1 3.9 34 8-41 120-153 (383)
277 PF08477 Miro: Miro-like prote 97.3 0.00023 4.9E-09 50.3 3.4 23 9-31 1-23 (119)
278 TIGR00101 ureG urease accessor 97.3 0.00023 4.9E-09 55.5 3.6 25 7-31 1-25 (199)
279 TIGR01241 FtsH_fam ATP-depende 97.3 0.00023 5E-09 63.2 4.0 32 7-38 88-119 (495)
280 PRK08116 hypothetical protein; 97.3 0.0034 7.4E-08 51.3 10.5 36 9-44 116-156 (268)
281 KOG0734|consensus 97.3 0.0014 3.1E-08 57.4 8.5 36 3-38 333-368 (752)
282 COG0541 Ffh Signal recognition 97.3 0.0015 3.3E-08 55.9 8.5 107 6-114 99-219 (451)
283 TIGR00635 ruvB Holliday juncti 97.3 0.00027 5.9E-09 58.6 4.1 28 8-35 31-58 (305)
284 PF03205 MobB: Molybdopterin g 97.3 0.00025 5.5E-09 52.1 3.4 24 8-31 1-24 (140)
285 PRK09435 membrane ATPase/prote 97.3 0.00025 5.5E-09 59.4 3.9 26 6-31 55-80 (332)
286 PRK00080 ruvB Holliday junctio 97.3 0.00026 5.6E-09 59.5 3.9 29 7-35 51-79 (328)
287 PF03215 Rad17: Rad17 cell cyc 97.3 0.00027 5.8E-09 62.8 4.1 30 8-37 46-75 (519)
288 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.00079 1.7E-08 53.9 6.5 25 6-30 20-44 (237)
289 PRK04195 replication factor C 97.3 0.00027 5.8E-09 62.6 4.1 32 7-38 39-70 (482)
290 cd04163 Era Era subfamily. Er 97.3 0.00023 5E-09 52.7 3.1 25 6-30 2-26 (168)
291 TIGR02880 cbbX_cfxQ probable R 97.3 0.00033 7.1E-09 57.7 4.3 23 9-31 60-82 (284)
292 PF02367 UPF0079: Uncharacteri 97.3 0.00031 6.7E-09 50.2 3.5 27 7-33 15-41 (123)
293 PF06745 KaiC: KaiC; InterPro 97.3 0.0011 2.3E-08 52.7 7.0 35 6-40 18-58 (226)
294 PRK14086 dnaA chromosomal repl 97.3 0.003 6.5E-08 57.0 10.4 36 10-45 317-359 (617)
295 KOG2702|consensus 97.3 0.0017 3.7E-08 51.1 7.7 24 9-32 121-144 (323)
296 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00032 7E-09 48.8 3.4 32 8-41 16-47 (107)
297 PF01712 dNK: Deoxynucleoside 97.2 0.00067 1.4E-08 50.2 5.3 23 106-128 65-88 (146)
298 cd01131 PilT Pilus retraction 97.2 0.00028 6E-09 55.0 3.4 24 9-32 3-26 (198)
299 PRK13695 putative NTPase; Prov 97.2 0.00031 6.6E-09 53.5 3.5 24 8-31 1-24 (174)
300 COG3911 Predicted ATPase [Gene 97.2 0.00034 7.5E-09 51.2 3.4 27 6-33 8-34 (183)
301 PRK04328 hypothetical protein; 97.2 0.00099 2.1E-08 53.8 6.3 24 7-30 23-46 (249)
302 PF03308 ArgK: ArgK protein; 97.2 0.00037 7.9E-09 55.9 3.7 25 7-31 29-53 (266)
303 PRK12377 putative replication 97.2 0.00057 1.2E-08 55.1 4.8 36 9-44 103-143 (248)
304 COG4240 Predicted kinase [Gene 97.2 0.00042 9.1E-09 54.4 3.9 40 6-45 49-94 (300)
305 KOG4238|consensus 97.2 0.0027 5.8E-08 53.1 8.7 109 7-126 50-168 (627)
306 PF01695 IstB_IS21: IstB-like 97.2 0.00059 1.3E-08 52.2 4.7 38 8-45 48-90 (178)
307 cd03115 SRP The signal recogni 97.2 0.00036 7.8E-09 53.0 3.5 31 9-39 2-37 (173)
308 PRK06921 hypothetical protein; 97.2 0.0011 2.4E-08 54.0 6.5 36 8-43 118-159 (266)
309 PRK08903 DnaA regulatory inact 97.2 0.00046 1E-08 54.8 4.2 34 8-41 43-81 (227)
310 PRK13342 recombination factor 97.2 0.00042 9.1E-09 60.1 4.2 31 8-38 37-67 (413)
311 COG1136 SalX ABC-type antimicr 97.2 0.00032 6.8E-09 55.4 2.9 23 7-29 31-53 (226)
312 cd01124 KaiC KaiC is a circadi 97.2 0.0004 8.6E-09 53.2 3.5 31 9-39 1-36 (187)
313 COG1855 ATPase (PilT family) [ 97.2 0.00032 7E-09 60.1 3.2 23 10-32 266-288 (604)
314 KOG1533|consensus 97.2 0.00032 6.9E-09 55.2 2.9 23 9-31 4-26 (290)
315 PRK06893 DNA replication initi 97.2 0.00056 1.2E-08 54.5 4.4 32 8-39 40-76 (229)
316 KOG0736|consensus 97.2 0.004 8.8E-08 56.8 10.1 29 10-38 708-736 (953)
317 KOG4622|consensus 97.2 0.015 3.4E-07 44.6 11.8 34 9-42 3-42 (291)
318 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.00061 1.3E-08 53.9 4.5 35 7-41 38-77 (226)
319 PRK06835 DNA replication prote 97.1 0.0022 4.8E-08 53.8 8.0 37 8-44 184-225 (329)
320 PF01926 MMR_HSR1: 50S ribosom 97.1 0.00041 8.8E-09 48.9 3.1 21 9-29 1-21 (116)
321 TIGR03015 pepcterm_ATPase puta 97.1 0.00041 9E-09 56.4 3.5 25 8-32 44-68 (269)
322 cd01120 RecA-like_NTPases RecA 97.1 0.00041 8.9E-09 51.4 3.2 23 9-31 1-23 (165)
323 PF13191 AAA_16: AAA ATPase do 97.1 0.0004 8.7E-09 52.9 3.2 27 6-32 23-49 (185)
324 cd01918 HprK_C HprK/P, the bif 97.1 0.00056 1.2E-08 50.6 3.7 31 7-38 14-44 (149)
325 TIGR00176 mobB molybdopterin-g 97.1 0.00047 1E-08 51.5 3.4 23 9-31 1-23 (155)
326 PRK08084 DNA replication initi 97.1 0.00048 1E-08 55.1 3.6 33 8-40 46-83 (235)
327 CHL00176 ftsH cell division pr 97.1 0.00052 1.1E-08 62.5 4.2 32 7-38 216-247 (638)
328 cd00544 CobU Adenosylcobinamid 97.1 0.00058 1.3E-08 51.8 3.7 25 9-33 1-25 (169)
329 COG1763 MobB Molybdopterin-gua 97.1 0.00044 9.5E-09 51.8 3.0 28 6-33 1-28 (161)
330 PRK06526 transposase; Provisio 97.1 0.00067 1.5E-08 54.9 4.2 38 7-44 98-140 (254)
331 PHA03138 thymidine kinase; Pro 97.1 0.0086 1.9E-07 50.0 10.7 25 7-31 12-36 (340)
332 PRK14493 putative bifunctional 97.1 0.00053 1.1E-08 56.1 3.6 25 7-31 1-25 (274)
333 PF00308 Bac_DnaA: Bacterial d 97.1 0.0033 7.1E-08 49.8 8.0 117 9-128 36-177 (219)
334 TIGR03689 pup_AAA proteasome A 97.1 0.00045 9.8E-09 61.1 3.3 28 7-34 216-243 (512)
335 COG4619 ABC-type uncharacteriz 97.1 0.0005 1.1E-08 51.6 3.0 26 6-31 28-53 (223)
336 PRK14962 DNA polymerase III su 97.1 0.00059 1.3E-08 60.1 3.9 27 7-33 36-62 (472)
337 KOG0780|consensus 97.1 0.0017 3.8E-08 54.7 6.4 107 6-118 100-225 (483)
338 TIGR01618 phage_P_loop phage n 97.1 0.00044 9.5E-09 54.6 2.8 34 6-41 11-44 (220)
339 COG1484 DnaC DNA replication p 97.0 0.0066 1.4E-07 49.2 9.6 39 7-45 105-148 (254)
340 PF06068 TIP49: TIP49 C-termin 97.0 0.00068 1.5E-08 57.1 3.9 32 6-37 49-82 (398)
341 COG1116 TauB ABC-type nitrate/ 97.0 0.00051 1.1E-08 54.6 2.9 25 7-31 29-53 (248)
342 KOG0743|consensus 97.0 0.00053 1.2E-08 58.8 3.1 29 10-38 238-266 (457)
343 COG1224 TIP49 DNA helicase TIP 97.0 0.0006 1.3E-08 56.9 3.4 28 5-32 63-90 (450)
344 PRK04296 thymidine kinase; Pro 97.0 0.00065 1.4E-08 52.5 3.3 25 7-31 2-26 (190)
345 TIGR02655 circ_KaiC circadian 97.0 0.001 2.2E-08 59.0 4.9 85 7-91 263-362 (484)
346 TIGR03499 FlhF flagellar biosy 97.0 0.00066 1.4E-08 55.8 3.5 34 7-40 194-234 (282)
347 cd04114 Rab30 Rab30 subfamily. 97.0 0.00079 1.7E-08 50.5 3.6 29 1-29 1-29 (169)
348 TIGR00362 DnaA chromosomal rep 97.0 0.0074 1.6E-07 52.3 10.0 36 9-44 138-180 (405)
349 KOG1970|consensus 97.0 0.00079 1.7E-08 59.1 3.9 31 7-37 110-140 (634)
350 PRK09183 transposase/IS protei 97.0 0.0011 2.4E-08 53.8 4.5 35 8-42 103-142 (259)
351 PF13555 AAA_29: P-loop contai 97.0 0.0009 2E-08 41.7 3.1 22 9-30 25-46 (62)
352 PRK06067 flagellar accessory p 97.0 0.0023 4.9E-08 51.1 6.3 33 7-39 25-62 (234)
353 PRK08181 transposase; Validate 97.0 0.0012 2.5E-08 53.9 4.6 38 8-45 107-149 (269)
354 PRK08533 flagellar accessory p 97.0 0.0022 4.8E-08 51.1 6.1 25 7-31 24-48 (230)
355 cd00879 Sar1 Sar1 subfamily. 96.9 0.00076 1.6E-08 51.8 3.3 25 5-29 17-41 (190)
356 TIGR00763 lon ATP-dependent pr 96.9 0.00084 1.8E-08 62.8 4.1 33 6-38 346-378 (775)
357 PF00005 ABC_tran: ABC transpo 96.9 0.0006 1.3E-08 49.5 2.6 25 7-31 11-35 (137)
358 PHA02544 44 clamp loader, smal 96.9 0.00093 2E-08 55.8 4.0 31 6-36 42-72 (316)
359 PRK07952 DNA replication prote 96.9 0.0013 2.8E-08 52.9 4.6 36 9-44 101-141 (244)
360 COG1703 ArgK Putative periplas 96.9 0.00081 1.7E-08 54.9 3.4 26 6-31 50-75 (323)
361 PRK14490 putative bifunctional 96.9 0.00077 1.7E-08 57.6 3.5 27 6-32 4-30 (369)
362 smart00173 RAS Ras subfamily o 96.9 0.0008 1.7E-08 50.2 3.2 21 9-29 2-22 (164)
363 PRK14721 flhF flagellar biosyn 96.9 0.0053 1.1E-07 53.2 8.5 25 7-31 191-215 (420)
364 PF04665 Pox_A32: Poxvirus A32 96.9 0.00086 1.9E-08 53.6 3.4 25 7-31 13-37 (241)
365 TIGR01243 CDC48 AAA family ATP 96.9 0.00087 1.9E-08 62.4 4.0 32 7-38 212-243 (733)
366 COG0714 MoxR-like ATPases [Gen 96.9 0.00094 2E-08 56.2 3.8 32 6-37 42-73 (329)
367 PLN03025 replication factor C 96.9 0.00085 1.9E-08 56.2 3.5 23 9-31 36-58 (319)
368 PF01078 Mg_chelatase: Magnesi 96.9 0.0007 1.5E-08 52.7 2.7 23 9-31 24-46 (206)
369 PF13479 AAA_24: AAA domain 96.9 0.00072 1.6E-08 53.3 2.9 29 7-38 3-31 (213)
370 PRK14491 putative bifunctional 96.9 0.00095 2.1E-08 60.5 4.0 32 1-32 4-35 (597)
371 cd01130 VirB11-like_ATPase Typ 96.9 0.00089 1.9E-08 51.6 3.3 25 7-31 25-49 (186)
372 PRK10733 hflB ATP-dependent me 96.9 0.015 3.3E-07 53.4 11.7 32 7-38 185-216 (644)
373 TIGR00073 hypB hydrogenase acc 96.9 0.00093 2E-08 52.3 3.4 26 7-32 22-47 (207)
374 PRK15455 PrkA family serine pr 96.9 0.00077 1.7E-08 60.0 3.1 25 7-31 103-127 (644)
375 COG0552 FtsY Signal recognitio 96.9 0.0086 1.9E-07 49.8 8.9 84 6-90 138-229 (340)
376 COG1124 DppF ABC-type dipeptid 96.9 0.00093 2E-08 53.0 3.2 24 7-30 33-56 (252)
377 PRK14961 DNA polymerase III su 96.9 0.001 2.2E-08 56.7 3.7 27 7-33 38-64 (363)
378 PRK00149 dnaA chromosomal repl 96.9 0.0091 2E-07 52.5 9.7 36 9-44 150-192 (450)
379 cd04138 H_N_K_Ras_like H-Ras/N 96.9 0.00098 2.1E-08 49.3 3.2 22 8-29 2-23 (162)
380 PRK14494 putative molybdopteri 96.9 0.001 2.2E-08 52.8 3.4 25 7-31 1-25 (229)
381 COG3840 ThiQ ABC-type thiamine 96.9 0.00093 2E-08 50.9 2.9 24 7-30 25-48 (231)
382 PRK14956 DNA polymerase III su 96.9 0.00093 2E-08 58.5 3.4 28 7-34 40-67 (484)
383 smart00175 RAB Rab subfamily o 96.9 0.00097 2.1E-08 49.6 3.1 23 8-30 1-23 (164)
384 PRK12402 replication factor C 96.8 0.001 2.2E-08 55.9 3.5 24 9-32 38-61 (337)
385 cd04119 RJL RJL (RabJ-Like) su 96.8 0.001 2.3E-08 49.5 3.2 22 9-30 2-23 (168)
386 CHL00206 ycf2 Ycf2; Provisiona 96.8 0.0011 2.5E-08 65.8 4.1 36 7-42 1630-1667(2281)
387 PRK11034 clpA ATP-dependent Cl 96.8 0.001 2.2E-08 61.7 3.7 30 9-38 490-519 (758)
388 KOG1532|consensus 96.8 0.0015 3.3E-08 52.7 4.2 40 5-44 17-61 (366)
389 PRK14722 flhF flagellar biosyn 96.8 0.0011 2.3E-08 56.6 3.4 25 7-31 137-161 (374)
390 cd00876 Ras Ras family. The R 96.8 0.00098 2.1E-08 49.2 2.9 21 9-29 1-21 (160)
391 cd04155 Arl3 Arl3 subfamily. 96.8 0.001 2.2E-08 50.1 3.1 24 7-30 14-37 (173)
392 PRK10463 hydrogenase nickel in 96.8 0.0011 2.4E-08 54.3 3.4 25 7-31 104-128 (290)
393 TIGR01166 cbiO cobalt transpor 96.8 0.001 2.2E-08 51.3 3.0 25 7-31 18-42 (190)
394 COG3839 MalK ABC-type sugar tr 96.8 0.00093 2E-08 56.0 2.9 23 8-30 30-52 (338)
395 cd03292 ABC_FtsE_transporter F 96.8 0.001 2.2E-08 52.2 3.1 25 7-31 27-51 (214)
396 cd02034 CooC The accessory pro 96.8 0.0017 3.6E-08 46.1 3.8 31 9-39 1-36 (116)
397 KOG0991|consensus 96.8 0.0011 2.4E-08 52.4 3.1 25 7-31 48-72 (333)
398 TIGR00960 3a0501s02 Type II (G 96.8 0.001 2.2E-08 52.3 3.0 25 7-31 29-53 (216)
399 TIGR00231 small_GTP small GTP- 96.8 0.0012 2.6E-08 48.2 3.2 23 8-30 2-24 (161)
400 PRK10646 ADP-binding protein; 96.8 0.0015 3.4E-08 48.4 3.7 26 8-33 29-54 (153)
401 TIGR02012 tigrfam_recA protein 96.8 0.0053 1.1E-07 51.3 7.2 37 7-43 55-96 (321)
402 PRK05642 DNA replication initi 96.8 0.0019 4.2E-08 51.6 4.5 36 8-43 46-86 (234)
403 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0011 2.3E-08 52.3 3.0 25 7-31 30-54 (218)
404 PRK10787 DNA-binding ATP-depen 96.8 0.0015 3.2E-08 61.0 4.4 32 6-37 348-379 (784)
405 KOG0651|consensus 96.8 0.0031 6.8E-08 51.8 5.7 39 6-44 165-205 (388)
406 TIGR02673 FtsE cell division A 96.8 0.0011 2.4E-08 52.1 3.0 25 7-31 28-52 (214)
407 KOG1969|consensus 96.8 0.0012 2.7E-08 59.7 3.6 31 8-38 327-357 (877)
408 KOG0727|consensus 96.8 0.0043 9.2E-08 49.7 6.2 40 9-48 191-232 (408)
409 PRK11331 5-methylcytosine-spec 96.8 0.0012 2.6E-08 57.3 3.4 26 7-32 194-219 (459)
410 cd04139 RalA_RalB RalA/RalB su 96.8 0.0012 2.6E-08 49.0 3.1 21 9-29 2-22 (164)
411 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0012 2.5E-08 51.8 3.1 25 7-31 27-51 (211)
412 PF06309 Torsin: Torsin; Inte 96.8 0.0017 3.7E-08 46.4 3.6 28 4-31 50-77 (127)
413 PF13086 AAA_11: AAA domain; P 96.8 0.0013 2.8E-08 51.8 3.4 23 9-31 19-41 (236)
414 cd04136 Rap_like Rap-like subf 96.8 0.0013 2.8E-08 48.9 3.1 22 8-29 2-23 (163)
415 PRK06645 DNA polymerase III su 96.8 0.0015 3.2E-08 58.0 3.9 29 6-34 42-70 (507)
416 PRK11784 tRNA 2-selenouridine 96.8 0.0093 2E-07 50.4 8.5 106 8-130 142-258 (345)
417 cd03264 ABC_drug_resistance_li 96.8 0.0011 2.5E-08 51.9 2.9 23 9-31 27-49 (211)
418 COG0396 sufC Cysteine desulfur 96.8 0.0012 2.6E-08 52.0 2.9 25 7-31 30-54 (251)
419 cd03269 ABC_putative_ATPase Th 96.8 0.0012 2.7E-08 51.7 3.1 25 7-31 26-50 (210)
420 PRK14489 putative bifunctional 96.7 0.0015 3.3E-08 55.7 3.9 27 5-31 203-229 (366)
421 cd01862 Rab7 Rab7 subfamily. 96.7 0.0012 2.7E-08 49.4 3.0 22 9-30 2-23 (172)
422 TIGR00750 lao LAO/AO transport 96.7 0.0014 3E-08 54.4 3.5 26 6-31 33-58 (300)
423 cd01983 Fer4_NifH The Fer4_Nif 96.7 0.0016 3.6E-08 43.7 3.3 30 9-38 1-33 (99)
424 cd00154 Rab Rab family. Rab G 96.7 0.0013 2.7E-08 48.3 3.0 21 9-29 2-22 (159)
425 PRK13341 recombination factor 96.7 0.0016 3.6E-08 60.1 4.2 31 8-38 53-83 (725)
426 cd04113 Rab4 Rab4 subfamily. 96.7 0.0014 3E-08 48.8 3.1 22 8-29 1-22 (161)
427 cd03263 ABC_subfamily_A The AB 96.7 0.0013 2.7E-08 52.0 3.1 25 7-31 28-52 (220)
428 cd03226 ABC_cobalt_CbiO_domain 96.7 0.0013 2.8E-08 51.4 3.0 25 7-31 26-50 (205)
429 cd00157 Rho Rho (Ras homology) 96.7 0.0014 3.1E-08 49.1 3.2 23 8-30 1-23 (171)
430 cd03114 ArgK-like The function 96.7 0.0015 3.3E-08 48.4 3.2 23 9-31 1-23 (148)
431 cd03261 ABC_Org_Solvent_Resist 96.7 0.0013 2.8E-08 52.5 3.0 25 7-31 26-50 (235)
432 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0013 2.7E-08 50.4 2.8 25 7-31 25-49 (177)
433 COG1117 PstB ABC-type phosphat 96.7 0.0013 2.8E-08 51.3 2.8 22 8-29 34-55 (253)
434 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0014 3E-08 49.8 3.1 25 7-31 26-50 (173)
435 PF03193 DUF258: Protein of un 96.7 0.0014 3.1E-08 49.0 3.1 26 6-31 34-59 (161)
436 cd03259 ABC_Carb_Solutes_like 96.7 0.0013 2.9E-08 51.6 3.1 25 7-31 26-50 (213)
437 cd03256 ABC_PhnC_transporter A 96.7 0.0013 2.8E-08 52.6 3.0 25 7-31 27-51 (241)
438 cd03224 ABC_TM1139_LivF_branch 96.7 0.0013 2.7E-08 52.0 2.9 25 7-31 26-50 (222)
439 TIGR02782 TrbB_P P-type conjug 96.7 0.0016 3.4E-08 54.1 3.5 24 8-31 133-156 (299)
440 cd03219 ABC_Mj1267_LivG_branch 96.7 0.0012 2.6E-08 52.6 2.8 25 7-31 26-50 (236)
441 cd03238 ABC_UvrA The excision 96.7 0.0014 3E-08 50.1 2.9 22 7-28 21-42 (176)
442 TIGR03608 L_ocin_972_ABC putat 96.7 0.0014 3E-08 51.1 3.1 25 7-31 24-48 (206)
443 COG1120 FepC ABC-type cobalami 96.7 0.0014 3.1E-08 52.8 3.1 25 7-31 28-52 (258)
444 PTZ00132 GTP-binding nuclear p 96.7 0.0017 3.8E-08 51.0 3.6 23 5-27 7-29 (215)
445 cd03229 ABC_Class3 This class 96.7 0.0015 3.2E-08 49.9 3.1 25 7-31 26-50 (178)
446 cd03293 ABC_NrtD_SsuB_transpor 96.7 0.0014 3E-08 51.8 3.1 25 7-31 30-54 (220)
447 cd03258 ABC_MetN_methionine_tr 96.7 0.0014 3E-08 52.2 3.1 25 7-31 31-55 (233)
448 TIGR02315 ABC_phnC phosphonate 96.7 0.0014 3E-08 52.6 3.0 25 7-31 28-52 (243)
449 cd00983 recA RecA is a bacter 96.7 0.0084 1.8E-07 50.2 7.7 35 7-41 55-94 (325)
450 KOG1534|consensus 96.7 0.0017 3.6E-08 50.5 3.3 52 175-226 208-260 (273)
451 PRK11629 lolD lipoprotein tran 96.7 0.0014 3.1E-08 52.2 3.1 25 7-31 35-59 (233)
452 cd03301 ABC_MalK_N The N-termi 96.7 0.0015 3.2E-08 51.3 3.1 25 7-31 26-50 (213)
453 PRK08939 primosomal protein Dn 96.7 0.0029 6.3E-08 52.6 5.0 36 9-44 158-198 (306)
454 cd03235 ABC_Metallic_Cations A 96.7 0.0013 2.8E-08 51.7 2.8 25 7-31 25-49 (213)
455 cd01394 radB RadB. The archaea 96.7 0.0017 3.7E-08 51.2 3.5 33 7-39 19-56 (218)
456 cd03265 ABC_DrrA DrrA is the A 96.7 0.0015 3.2E-08 51.6 3.1 25 7-31 26-50 (220)
457 TIGR02211 LolD_lipo_ex lipopro 96.7 0.0015 3.2E-08 51.6 3.1 25 7-31 31-55 (221)
458 PF00437 T2SE: Type II/IV secr 96.7 0.0016 3.4E-08 53.2 3.3 25 7-31 127-151 (270)
459 PRK13851 type IV secretion sys 96.7 0.0013 2.9E-08 55.5 2.9 25 8-32 163-187 (344)
460 cd03262 ABC_HisP_GlnQ_permease 96.7 0.0015 3.2E-08 51.3 3.1 25 7-31 26-50 (213)
461 PRK14963 DNA polymerase III su 96.7 0.0016 3.4E-08 57.9 3.5 27 7-33 36-62 (504)
462 cd04177 RSR1 RSR1 subgroup. R 96.7 0.0016 3.5E-08 48.9 3.1 22 8-29 2-23 (168)
463 cd03260 ABC_PstB_phosphate_tra 96.7 0.0016 3.5E-08 51.6 3.3 25 7-31 26-50 (227)
464 COG1127 Ttg2A ABC-type transpo 96.7 0.014 3E-07 46.4 8.3 26 6-31 33-58 (263)
465 TIGR02524 dot_icm_DotB Dot/Icm 96.7 0.0016 3.6E-08 55.3 3.5 24 8-31 135-158 (358)
466 cd03296 ABC_CysA_sulfate_impor 96.7 0.0015 3.3E-08 52.3 3.0 25 7-31 28-52 (239)
467 COG3842 PotA ABC-type spermidi 96.7 0.0014 3E-08 55.2 2.9 22 8-29 32-53 (352)
468 PRK13541 cytochrome c biogenes 96.7 0.0016 3.4E-08 50.5 3.1 25 7-31 26-50 (195)
469 cd03223 ABCD_peroxisomal_ALDP 96.7 0.0016 3.5E-08 49.1 3.0 25 7-31 27-51 (166)
470 COG0802 Predicted ATPase or ki 96.7 0.0021 4.6E-08 47.2 3.5 28 6-33 24-51 (149)
471 TIGR02237 recomb_radB DNA repa 96.6 0.002 4.3E-08 50.4 3.6 35 6-40 11-50 (209)
472 COG1100 GTPase SAR1 and relate 96.6 0.0015 3.3E-08 51.2 2.9 24 8-31 6-29 (219)
473 cd04164 trmE TrmE (MnmE, ThdF, 96.6 0.0018 3.8E-08 47.6 3.1 23 8-30 2-24 (157)
474 cd04137 RheB Rheb (Ras Homolog 96.6 0.0017 3.7E-08 49.3 3.1 22 8-29 2-23 (180)
475 PRK10247 putative ABC transpor 96.6 0.0017 3.6E-08 51.6 3.1 25 7-31 33-57 (225)
476 cd03257 ABC_NikE_OppD_transpor 96.6 0.0016 3.4E-08 51.6 3.0 25 7-31 31-55 (228)
477 cd01860 Rab5_related Rab5-rela 96.6 0.0017 3.8E-08 48.2 3.0 23 8-30 2-24 (163)
478 PRK14723 flhF flagellar biosyn 96.6 0.017 3.6E-07 53.6 9.8 25 7-31 185-209 (767)
479 PF01443 Viral_helicase1: Vira 96.6 0.0015 3.1E-08 51.9 2.7 22 10-31 1-22 (234)
480 PRK15177 Vi polysaccharide exp 96.6 0.0017 3.6E-08 51.2 3.0 25 7-31 13-37 (213)
481 PRK12323 DNA polymerase III su 96.6 0.021 4.6E-07 51.9 10.2 28 6-33 37-64 (700)
482 cd03232 ABC_PDR_domain2 The pl 96.6 0.0017 3.7E-08 50.2 3.0 23 7-29 33-55 (192)
483 cd01865 Rab3 Rab3 subfamily. 96.6 0.0018 3.9E-08 48.5 3.1 22 8-29 2-23 (165)
484 PRK14960 DNA polymerase III su 96.6 0.0021 4.6E-08 58.3 3.9 27 7-33 37-63 (702)
485 TIGR03864 PQQ_ABC_ATP ABC tran 96.6 0.0017 3.7E-08 51.9 3.1 25 7-31 27-51 (236)
486 cd04159 Arl10_like Arl10-like 96.6 0.0016 3.4E-08 47.8 2.7 21 10-30 2-22 (159)
487 PRK11248 tauB taurine transpor 96.6 0.0017 3.6E-08 52.6 3.1 25 7-31 27-51 (255)
488 cd03246 ABCC_Protease_Secretio 96.6 0.0018 4E-08 49.1 3.1 25 7-31 28-52 (173)
489 cd01867 Rab8_Rab10_Rab13_like 96.6 0.0019 4E-08 48.5 3.1 22 8-29 4-25 (167)
490 cd03218 ABC_YhbG The ABC trans 96.6 0.0017 3.7E-08 51.6 3.1 25 7-31 26-50 (232)
491 PRK14955 DNA polymerase III su 96.6 0.0021 4.6E-08 55.5 3.8 27 7-33 38-64 (397)
492 cd01128 rho_factor Transcripti 96.6 0.002 4.3E-08 52.0 3.3 28 6-33 15-42 (249)
493 cd03247 ABCC_cytochrome_bd The 96.6 0.0019 4.2E-08 49.2 3.2 25 7-31 28-52 (178)
494 TIGR01978 sufC FeS assembly AT 96.6 0.0017 3.7E-08 52.0 3.0 24 7-30 26-49 (243)
495 PRK11124 artP arginine transpo 96.6 0.0018 3.8E-08 52.0 3.1 25 7-31 28-52 (242)
496 cd04124 RabL2 RabL2 subfamily. 96.6 0.002 4.3E-08 48.1 3.2 21 9-29 2-22 (161)
497 cd03216 ABC_Carb_Monos_I This 96.6 0.0019 4.1E-08 48.6 3.1 25 7-31 26-50 (163)
498 PRK14949 DNA polymerase III su 96.6 0.0016 3.4E-08 60.9 3.1 29 6-34 37-65 (944)
499 PRK12726 flagellar biosynthesi 96.6 0.0023 5E-08 54.4 3.8 34 7-40 206-244 (407)
500 cd04123 Rab21 Rab21 subfamily. 96.6 0.002 4.3E-08 47.6 3.2 21 9-29 2-22 (162)
No 1
>PLN02674 adenylate kinase
Probab=100.00 E-value=5.7e-44 Score=283.24 Aligned_cols=207 Identities=41% Similarity=0.736 Sum_probs=197.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--C
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--K 83 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 83 (228)
.+++|+|+|||||||||+|+.|+++||+++|++++++|+++..++++|..+++++..|..+|++++..++.+++... .
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 109 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 109 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999775 6
Q ss_pred CceEEcCCCCCHHHHHHHHhc----CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy6801 84 CNYLLDGFPRTYDQAMALFKN----HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLI 159 (228)
Q Consensus 84 ~~~ildg~p~~~~~~~~l~~~----~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~ 159 (228)
.|||+||||++..|++.|+.. +..++.+|+|++|++++.+|+..|.+|+.||+.||..++||...+.|+.|+++|.
T Consensus 110 ~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~ 189 (244)
T PLN02674 110 KGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 189 (244)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccc
Confidence 899999999999999987643 5679999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHH
Q psy6801 160 QRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l 212 (228)
.|.+|.++.+++|+..|++++.++.++|++.+.++.||++++ ++|++.|...|
T Consensus 190 ~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 190 QRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 99999999876
No 2
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=4.7e-41 Score=263.11 Aligned_cols=205 Identities=35% Similarity=0.622 Sum_probs=194.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCce
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCNY 86 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 86 (228)
+|+|+|+|||||||+|+.|++.+++.++++++++++.+...++.++.+..++..|..+|++++..++.+++... ..+|
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ 81 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF 81 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999765 7889
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCcH
Q psy6801 87 LLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKP 166 (228)
Q Consensus 87 ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 166 (228)
|+||||++..|+..|... .....+|+|++|++++.+|+..|.+|+.||+.||..++||...+.|+.|++++..|.+|.+
T Consensus 82 ilDGfPR~~~Qa~~l~~~-~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~ 160 (211)
T PRK14526 82 ILDGFPRNINQAKALDKF-LPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKE 160 (211)
T ss_pred EEECCCCCHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCCH
Confidence 999999999999999875 4445688899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 167 EAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 167 ~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
+.+++|+..|++++.++.++|...+.++.||++++ ++|+++|.+.|..
T Consensus 161 e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 161 ESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 99999999999999999999999889999999999 9999999998875
No 3
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=9.2e-41 Score=265.90 Aligned_cols=205 Identities=35% Similarity=0.601 Sum_probs=190.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc----
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL---- 82 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 82 (228)
+++|+|+|||||||||+|+.|++.+++.++++++++|.++...+++|..++.++..|..+|++++..++.+++...
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~ 108 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEG 108 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccC
Confidence 3679999999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCC-------------CCCCCCC
Q psy6801 83 KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDF-------------NAPKKPG 149 (228)
Q Consensus 83 ~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~-------------~~p~~~~ 149 (228)
..+|||||||++..|++.|+.. ..++.+|+|++|++++.+|+..|.+|+.||+.||..+ +||..+
T Consensus 109 ~~g~iLDGFPRt~~Qa~~Le~~-~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~- 186 (261)
T PLN02459 109 ESGFILDGFPRTVRQAEILEGV-TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLP- 186 (261)
T ss_pred CceEEEeCCCCCHHHHHHHHhc-CCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCC-
Confidence 6889999999999999999887 6789999999999999999999999999999999863 566544
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 150 IDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
++.|++++..|.+|.++.+++|+..|.+++.++.++|.+.+.++.||++++ ++|+++|.+.|.-
T Consensus 187 -~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~ 251 (261)
T PLN02459 187 -PPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL 251 (261)
T ss_pred -CcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence 346888999999999999999999999999999999999999999999999 9999999998863
No 4
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=1.4e-40 Score=261.92 Aligned_cols=204 Identities=50% Similarity=0.859 Sum_probs=193.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc---CCc
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL---KCN 85 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~ 85 (228)
+|+|+|+|||||||+|+.|++.+|+++++++|++++.+...++++..+..++..|..++++++..++.+++... ..+
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~ 80 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENG 80 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCc
Confidence 48999999999999999999999999999999999999989999999999999999999999999999999763 679
Q ss_pred eEEcCCCCCHHHHHHHHhcCC-CCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCC
Q psy6801 86 YLLDGFPRTYDQAMALFKNHL-SPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDD 164 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~~~~~-~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 164 (228)
||+||||++..|++.|..... .|+.+|+|++|++++.+|+..|..|+.||+.||..++||..+..|+.+++++..|.+|
T Consensus 81 ~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD 160 (210)
T TIGR01351 81 FILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDD 160 (210)
T ss_pred EEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCC
Confidence 999999999999999988755 6999999999999999999999999999999999999999888888889999999999
Q ss_pred cHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHH
Q psy6801 165 KPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 165 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l 212 (228)
.++.+++|+..|++++.++.++|.+.+.++.||++++ ++|++.|.+.|
T Consensus 161 ~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 161 TEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 9999999999999999999999999889999999999 99999999876
No 5
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=1.6e-39 Score=256.82 Aligned_cols=207 Identities=43% Similarity=0.778 Sum_probs=194.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCN 85 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 85 (228)
++|+|+|+|||||||+|+.|++++|++++++++++++.+...++.+..+..++..|..++++.+..++.+++... ..+
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence 479999999999999999999999999999999999999989999999999999999999999999999998765 458
Q ss_pred eEEcCCCCCHHHHHHHH----hcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccC
Q psy6801 86 YLLDGFPRTYDQAMALF----KNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQR 161 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~----~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~ 161 (228)
|||||||++..|+..|. ..+..++.+|+|++|++++.+|+..|..|+.||..||..++||...+.|+.|++.+..|
T Consensus 81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r 160 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR 160 (215)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence 99999999999999884 34567899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 162 DDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
.++.++.+++|+..|+.++.++.++|.+.+.++.||++.+ +++++.|.+.|..
T Consensus 161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 161 ADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999889999999999 9999999998764
No 6
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=1.3e-39 Score=255.52 Aligned_cols=205 Identities=34% Similarity=0.547 Sum_probs=185.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc-CCce
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-KCNY 86 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 86 (228)
++|+|+|||||||||+|+.|++.|++++++.++++|+++..++++++.++.++..|..+|++++..++.+++... ..+|
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence 369999999999999999999999999999999999999989999999999999999999999999999999776 7899
Q ss_pred EEcCCCCCHHHHHHHHh----cCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCC-CCCCCC-CCccccccccc
Q psy6801 87 LLDGFPRTYDQAMALFK----NHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFN-APKKPG-IDDITGEKLIQ 160 (228)
Q Consensus 87 ildg~p~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~-~p~~~~-~~~~~~~~~~~ 160 (228)
|+||||++..|++.|.. .+..|+.+|+|++|++++.+|+..|.+|+.||..|+..+. ||..++ .|+.|+++|..
T Consensus 81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~ 160 (223)
T PRK14529 81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELST 160 (223)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCcccc
Confidence 99999999999998764 4678999999999999999999999999998887666664 444434 79999999999
Q ss_pred CCCCc-HHHHHHHHHHHHhc---HHHHHHHhhh-----CCcEEEEeCCCC-cchHHHHHHHH
Q psy6801 161 RDDDK-PEAIKKRLETFDQT---IKPLLDYYDN-----REVLDTFTGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 161 ~~~~~-~~~~~~~~~~y~~~---~~~~~~~~~~-----~~~~i~id~~~~-e~v~~~i~~~l 212 (228)
|.+|. ++.+++|+..|+++ ..++.+||++ .+.++.||++++ ++|+++|.+.|
T Consensus 161 R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 161 RADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred CCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 99996 78999999999997 4578899995 678999999999 99999999876
No 7
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=3.4e-39 Score=255.26 Aligned_cols=208 Identities=33% Similarity=0.560 Sum_probs=188.6
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhc--
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKD-- 81 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 81 (228)
.+.|++|+|+|||||||||+|+.|++.||++++++|+++++.+...+++|..++.++..|..++++.+..++.+++.+
T Consensus 3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~ 82 (229)
T PTZ00088 3 LKGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVT 82 (229)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhc
Confidence 356778999999999999999999999999999999999999988899999999999999999999999999999876
Q ss_pred c--CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCC-------CCCC-CCCCC
Q psy6801 82 L--KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDF-------NAPK-KPGID 151 (228)
Q Consensus 82 ~--~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~-------~~p~-~~~~~ 151 (228)
. ..+||+||||++..|+..|... ..|+.+|+|++|.+++.+|+..|++|+.||+.||..+ .||. .++.|
T Consensus 83 ~~~~~g~iLDGfPRt~~Qa~~l~~~-~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c 161 (229)
T PTZ00088 83 DDCFKGFILDGFPRNLKQCKELGKI-TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADC 161 (229)
T ss_pred cccCceEEEecCCCCHHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcc
Confidence 2 6899999999999999999876 6899999999999999999999999999999999873 2333 24578
Q ss_pred ccccc--ccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCc-EEEE---eCCCC-cchHHHHHHHH
Q psy6801 152 DITGE--KLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREV-LDTF---TGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 152 ~~~~~--~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~-~i~i---d~~~~-e~v~~~i~~~l 212 (228)
+.|+. ++..|.+|.++.+.+|+..|++++.++.++|.+.++ ++++ |++++ ++|++.|.+.+
T Consensus 162 ~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 229 (229)
T PTZ00088 162 EGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL 229 (229)
T ss_pred cccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence 88884 788999999999999999999999999999999999 9888 78888 88998887753
No 8
>PRK14530 adenylate kinase; Provisional
Probab=100.00 E-value=7e-38 Score=247.44 Aligned_cols=207 Identities=36% Similarity=0.689 Sum_probs=188.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHH-----hccChhhHHHHHHHHCCCCCChHHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHI-----AQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVK 80 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (228)
+.++|+|+|+|||||||+|+.|++.+++++++++++++... .....++. ...++..|..++++....++...+.
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34589999999999999999999999999999999999887 33455554 5678889999999999998888876
Q ss_pred ccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccccc
Q psy6801 81 DLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQ 160 (228)
Q Consensus 81 ~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~ 160 (228)
. ..+||+||||++..|++.|... ..++.+|+|++|.+++.+|+.+|..|+.||+.||..++||...+.++.|++++..
T Consensus 81 ~-~~~~IldG~pr~~~q~~~l~~~-~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~ 158 (215)
T PRK14530 81 D-ADGFVLDGYPRNLEQAEYLESI-TDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQ 158 (215)
T ss_pred c-CCCEEEcCCCCCHHHHHHHHHh-cCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccC
Confidence 6 7899999999999999988765 5689999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 161 RDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
|.++.++.+++|+..|.+++.++.++|.+.+.++.||++++ ++|++.|...|...
T Consensus 159 R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 214 (215)
T PRK14530 159 RDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDDA 214 (215)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998888999999999 99999999988753
No 9
>KOG3078|consensus
Probab=100.00 E-value=1.5e-36 Score=235.88 Aligned_cols=215 Identities=47% Similarity=0.881 Sum_probs=203.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--C
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--K 83 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 83 (228)
++.++++.|+|||||+|+|.++++.|++.+++++|++|.++...+++|+..+.++..|+.++++++..++...+... .
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999666667665 7
Q ss_pred CceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCC
Q psy6801 84 CNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDD 163 (228)
Q Consensus 84 ~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 163 (228)
.+|++||||++..|+..+...+..+|.+|.|.+|++.+.+|+..|++++.+|+.||..++||...+.++.++++|.+|.+
T Consensus 94 ~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~d 173 (235)
T KOG3078|consen 94 KGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRED 173 (235)
T ss_pred cccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCcc
Confidence 89999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCCcchHHHHHHHHhhcCCCCC
Q psy6801 164 DKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTTDEIWPRIYEHLNIRIPPLK 220 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~e~v~~~i~~~l~~~~~~~~ 220 (228)
|.++.+..|+..|.++..++.+||+..++++.+++..+++||..|...+...++..+
T Consensus 174 D~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~~~~v~~~v~~~l~~~~~~~~ 230 (235)
T KOG3078|consen 174 DKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEKPEEVFPNVYAFLSKKVPERE 230 (235)
T ss_pred ccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcchhHhHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999889999999999998886653
No 10
>KOG3079|consensus
Probab=100.00 E-value=2.1e-35 Score=218.96 Aligned_cols=185 Identities=29% Similarity=0.597 Sum_probs=170.4
Q ss_pred cccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhc-cChhhHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q psy6801 3 NTLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQ-NTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKD 81 (228)
Q Consensus 3 ~~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (228)
+...+++|+|.|.|||||-|+|.+++++|++.|++++|++|++... +++.|..+++++.+|..+|.+++..++.+++..
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS 83 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999999999999988 999999999999999999999999999999988
Q ss_pred c--CCceEEcCCCCCHHHHHHHHhcCC-CCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccc
Q psy6801 82 L--KCNYLLDGFPRTYDQAMALFKNHL-SPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKL 158 (228)
Q Consensus 82 ~--~~~~ildg~p~~~~~~~~l~~~~~-~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~ 158 (228)
. ..+++|||||+..+|+..|+.... .|++++|++|+.|++.+|+..|...
T Consensus 84 ~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~--------------------------- 136 (195)
T KOG3079|consen 84 SGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS--------------------------- 136 (195)
T ss_pred cCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc---------------------------
Confidence 7 455999999999999999998744 6999999999999999999999321
Q ss_pred ccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 159 IQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
..|.+++.+.+++|+..|.+...+++++|++.+.+..|+++.+ ++|++++...|..
T Consensus 137 ~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 137 NSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred CCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 1268899999999999999999999999999999999999999 9999999988764
No 11
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=1e-33 Score=232.81 Aligned_cols=190 Identities=33% Similarity=0.607 Sum_probs=169.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCN 85 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 85 (228)
++|+|+|||||||||+|..|++.||+++++++|+++..+...++.+..+.+++..|..+|++++..++.+++... ..+
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999998765 679
Q ss_pred eEEcCCCCCHHHHHHHHh----cCCCCCEEEEEEeCHHHHHHHHhcCccCCC-CCcccccCCCCCCCCCCCccccccccc
Q psy6801 86 YLLDGFPRTYDQAMALFK----NHLSPNCVMHINVPKEVIIDRLSKRWIHPA-SGRVYNLDFNAPKKPGIDDITGEKLIQ 160 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~-~g~~~~~~~~~p~~~~~~~~~~~~~~~ 160 (228)
|||||||++..|++.|+. .++.||++|+|++|++++++|+..|..+.. +|. ..
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~----------------------~~ 138 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGE----------------------EV 138 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCC----------------------cc
Confidence 999999999999997753 356899999999999999999999854311 111 13
Q ss_pred CCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCCCC
Q psy6801 161 RDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIPPL 219 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~~~ 219 (228)
|.+++++.+.+|+..|+.+..++.++|.+.+.++.||++.+ ++|++.|...|...+...
T Consensus 139 R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~~~ 198 (333)
T PRK13808 139 RADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAAN 198 (333)
T ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhCCC
Confidence 67788999999999999999999999998888999999999 999999999999877543
No 12
>PLN02842 nucleotide kinase
Probab=100.00 E-value=1.1e-33 Score=242.90 Aligned_cols=204 Identities=33% Similarity=0.646 Sum_probs=187.7
Q ss_pred EEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc---CCceE
Q psy6801 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL---KCNYL 87 (228)
Q Consensus 11 ~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~i 87 (228)
.|+|+|||||||+|+.|++.|++.+++++++++.++..++++|+.+++++..|..++++.+..++.+++... ..+||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 379999999999999999999999999999999999999999999999999999999999999999988653 67899
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCcHH
Q psy6801 88 LDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPE 167 (228)
Q Consensus 88 ldg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 167 (228)
+||||++..|++.|...+..||++|+|++|++++.+|+..|..|+.||..||..+.||.... ++.++..|.+|.++
T Consensus 81 LDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~----~~~rL~~R~DD~eE 156 (505)
T PLN02842 81 LDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEE----IKARLITRPDDTEE 156 (505)
T ss_pred EeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccc----cccccccCCCCCHH
Confidence 99999999999999888778999999999999999999999999999999999999987543 35678889999999
Q ss_pred HHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCCCCC
Q psy6801 168 AIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIPPLK 220 (228)
Q Consensus 168 ~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~~~~ 220 (228)
.+++|+..|+++..++.++|.. .++.||++.+ ++|+++|.+.|...+....
T Consensus 157 ~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L~~~~ 208 (505)
T PLN02842 157 KVKARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQKDAT 208 (505)
T ss_pred HHHHHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999964 5889999999 9999999999998876543
No 13
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=100.00 E-value=4.9e-33 Score=216.37 Aligned_cols=188 Identities=48% Similarity=0.836 Sum_probs=172.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCce
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCNY 86 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 86 (228)
+|+|+|+|||||||+|+.|++++|+.++++++++++.+...++++..+..++..|..++++.+..++..++... +.+|
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 58999999999999999999999999999999999999888899999999999999999999999999998764 6789
Q ss_pred EEcCCCCCHHHHHHHHhcCC---CCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCC
Q psy6801 87 LLDGFPRTYDQAMALFKNHL---SPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDD 163 (228)
Q Consensus 87 ildg~p~~~~~~~~l~~~~~---~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 163 (228)
|+||||++..|+..+..... .|+.+|+|++|++++.+|+..|..++.||+.||. +.+..++.++..+.+
T Consensus 81 vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~--------~~~~~~~~~l~~r~d 152 (194)
T cd01428 81 ILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL--------GKDDVTGEPLSQRSD 152 (194)
T ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc--------CCCcccCCccccCCC
Confidence 99999999999999987754 7999999999999999999999999999999998 333456778888899
Q ss_pred CcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cch
Q psy6801 164 DKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEI 204 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v 204 (228)
+.++.+++|+..|..++.++.++|.+.+.++.||++.+ +++
T Consensus 153 d~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 153 DNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 99999999999999999999999999889999999988 654
No 14
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=6.6e-33 Score=213.77 Aligned_cols=175 Identities=37% Similarity=0.625 Sum_probs=159.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc-CCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-KCN 85 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 85 (228)
.++|+|+|+|||||||+|+.|++.+|++++++++++|+++...++++..+..++..|..++++.+..++.+++... +.+
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g 81 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGG 81 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCc
Confidence 3479999999999999999999999999999999999999999999999999999999999999999988888754 788
Q ss_pred eEEcCCCCCHHHHHHHHhc----CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccC
Q psy6801 86 YLLDGFPRTYDQAMALFKN----HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQR 161 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~~~----~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~ 161 (228)
||+||||++..|+..++.. +..|+.+|+|+||++++.+|+..|. +
T Consensus 82 ~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~-------------------------------r 130 (183)
T PRK14531 82 WLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG-------------------------------R 130 (183)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC-------------------------------C
Confidence 9999999999999877643 4578899999999999999999981 4
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHH
Q psy6801 162 DDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l 212 (228)
.++.++.+.+|+..|++...++.++|...+.++.||++++ +++++.|.+.|
T Consensus 131 ~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 131 ADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 5678889999999999999999999998889999999999 99999998876
No 15
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=7.9e-33 Score=213.62 Aligned_cols=178 Identities=35% Similarity=0.636 Sum_probs=162.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCN 85 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 85 (228)
++|+|.|+|||||||+|+.|++.+|+++++++++++..+..+++++..+..++..|..+++..+..++.+++.+. ..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 579999999999999999999999999999999999999999999999999999999999999999999988775 678
Q ss_pred eEEcCCCCCHHHHHHHHhc----CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccC
Q psy6801 86 YLLDGFPRTYDQAMALFKN----HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQR 161 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~~~----~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~ 161 (228)
||+||||++..|++.+... +..||.+|+|++|++++.+|+..|..+ . .+
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~--~-------------------------gr 134 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI--E-------------------------GR 134 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc--c-------------------------CC
Confidence 9999999999999988653 457999999999999999999999432 1 25
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHH
Q psy6801 162 DDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l 212 (228)
.++.++.+.+|+..|++...++.++|+..+.+++||++.+ ++|++.|.+.+
T Consensus 135 ~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~~ 186 (186)
T PRK14528 135 ADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL 186 (186)
T ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhC
Confidence 6788999999999999999999999999999999999999 99999988653
No 16
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=5.9e-32 Score=209.45 Aligned_cols=178 Identities=32% Similarity=0.590 Sum_probs=160.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCce
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCNY 86 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 86 (228)
.|+|+|+|||||||+|+.|++++|+.++++|+++++.+..+++.+..+..++..|..++++.+..++...+... +.+|
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA 81 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence 69999999999999999999999999999999999999888999999999999999999999999999888665 7899
Q ss_pred EEcCCCCCHHHHHHHH----hcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCC
Q psy6801 87 LLDGFPRTYDQAMALF----KNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRD 162 (228)
Q Consensus 87 ildg~p~~~~~~~~l~----~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~ 162 (228)
|+||||++..|++.+. ..+..||.+|+|++|++++.+|+..|..+ ..+.
T Consensus 82 vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~---------------------------~~r~ 134 (188)
T PRK14532 82 IFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEE---------------------------QGRP 134 (188)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCc---------------------------CCCC
Confidence 9999999999998765 34578999999999999999999998321 1256
Q ss_pred CCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 163 DDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
++..+.+.+|+..|..+..++.++|.+.+.++.||++.+ +++++.|.+.|.
T Consensus 135 dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 135 DDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 677888999999999999999999998888999999999 999999999875
No 17
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=2.6e-31 Score=206.27 Aligned_cols=180 Identities=37% Similarity=0.660 Sum_probs=161.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc-CC
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-KC 84 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 84 (228)
.+++|+|+|+|||||||+|+.|++++++.+++.+++++..+...++++..+..++..|..++++.+..++.+.+... ..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~ 84 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPV 84 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCC
Confidence 56789999999999999999999999999999999999999888999999999999999999999999999888764 56
Q ss_pred ceEEcCCCCCHHHHHHHHh----cCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccccc
Q psy6801 85 NYLLDGFPRTYDQAMALFK----NHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQ 160 (228)
Q Consensus 85 ~~ildg~p~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~ 160 (228)
+||+||||++..|+..+.. .+..++.+|+|++|++++.+|+.+|... ..
T Consensus 85 ~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~---------------------------~~ 137 (191)
T PRK14527 85 RVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ---------------------------EG 137 (191)
T ss_pred cEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc---------------------------CC
Confidence 7999999999999887653 3567889999999999999999999422 12
Q ss_pred CCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHH
Q psy6801 161 RDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l 212 (228)
+.++.++.+.+|+..|+++..++.++|.+.+.++.||++++ ++|+++|...|
T Consensus 138 r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 138 RSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 56778899999999999999999999999889999999999 99999998876
No 18
>PLN02200 adenylate kinase family protein
Probab=100.00 E-value=3.3e-31 Score=210.96 Aligned_cols=183 Identities=32% Similarity=0.593 Sum_probs=164.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc-CC
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-KC 84 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 84 (228)
.|++|+|+|+|||||||+|+.|++++|+.+++.++++|+.+...++.+..+..++..|..++++.+..++..++... ..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~~~ 121 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSDNN 121 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999999999988999999999999999999999999888888755 67
Q ss_pred ceEEcCCCCCHHHHHHHHhc-CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCC
Q psy6801 85 NYLLDGFPRTYDQAMALFKN-HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDD 163 (228)
Q Consensus 85 ~~ildg~p~~~~~~~~l~~~-~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 163 (228)
+||+||||++..|+..+... +..||.+|+|++|++++.+|+.+|.. .+.+
T Consensus 122 ~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~-----------------------------~r~d 172 (234)
T PLN02200 122 KFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ-----------------------------GRVD 172 (234)
T ss_pred eEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC-----------------------------CCCC
Confidence 89999999999999888654 45799999999999999999999832 1455
Q ss_pred CcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCC
Q psy6801 164 DKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIP 217 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~ 217 (228)
+..+.+++++..|.+...++.++|+..+.++.||++++ ++|++.|.+.+.....
T Consensus 173 d~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 173 DNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEA 227 (234)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 67889999999999999999999998888999999999 9999999999887663
No 19
>PRK02496 adk adenylate kinase; Provisional
Probab=100.00 E-value=7.6e-31 Score=202.54 Aligned_cols=176 Identities=40% Similarity=0.729 Sum_probs=158.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KC 84 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 84 (228)
|++|+|.|+|||||||+|+.|++.++++++++++++++.+...++++..+..++..|..++++.+..++..++... ..
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccC
Confidence 3579999999999999999999999999999999999999888999999999999999999999999999988754 67
Q ss_pred ceEEcCCCCCHHHHHHHHh----cCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccccc
Q psy6801 85 NYLLDGFPRTYDQAMALFK----NHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQ 160 (228)
Q Consensus 85 ~~ildg~p~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~ 160 (228)
+||+||||++..|+..+.. .+..|+.+|+|++|++++.+|+..|.
T Consensus 81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~------------------------------- 129 (184)
T PRK02496 81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG------------------------------- 129 (184)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC-------------------------------
Confidence 8999999999999887754 34579999999999999999999981
Q ss_pred CCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 161 RDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
+.++.++.+++++..|..+..++.++|+..+.++.||++++ ++|+++|.+.|.
T Consensus 130 ~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 130 RKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 34567889999999999999999999988888999999999 999999998774
No 20
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=100.00 E-value=8.7e-31 Score=202.01 Aligned_cols=177 Identities=31% Similarity=0.604 Sum_probs=157.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc-CCceE
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-KCNYL 87 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i 87 (228)
+|+|+|+|||||||+|+.|++++|+.+++++|++++.+...++.++.+..++..|..++++.+..++...+... +.+||
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v 80 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL 80 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence 48999999999999999999999999999999999999888899999999999999999999999999888765 67899
Q ss_pred EcCCCCCHHHHHHHHhc---CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCC
Q psy6801 88 LDGFPRTYDQAMALFKN---HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDD 164 (228)
Q Consensus 88 ldg~p~~~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 164 (228)
+||||++..|+..+... +..|+.+|+|++|++++.+|+..|... .| +.++
T Consensus 81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~--~~-------------------------r~dd 133 (183)
T TIGR01359 81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS--SG-------------------------RVDD 133 (183)
T ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc--CC-------------------------CCCC
Confidence 99999999998876542 357999999999999999999999321 12 3456
Q ss_pred cHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHH
Q psy6801 165 KPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 165 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l 212 (228)
..+.+++++..|..+..++.++|...+.++.||++++ ++++++|.+.+
T Consensus 134 ~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 134 NIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 7889999999999999999999988778999999999 99999999876
No 21
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.97 E-value=3.1e-29 Score=187.56 Aligned_cols=144 Identities=42% Similarity=0.843 Sum_probs=130.7
Q ss_pred EEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCceEEc
Q psy6801 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCNYLLD 89 (228)
Q Consensus 12 i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ild 89 (228)
|.|||||||||+|++|+++||+.+|++++++++.+...+++|+.+.+++..|..+|++++..++..++... ..+||+|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999876 8999999
Q ss_pred CCCCCHHHHHHHHh----cCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCc
Q psy6801 90 GFPRTYDQAMALFK----NHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDK 165 (228)
Q Consensus 90 g~p~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 165 (228)
|||++..|+..|.. .+..|+.+|+|+||++++.+|+.. +.
T Consensus 81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~------------------------------------d~ 124 (151)
T PF00406_consen 81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ------------------------------------DN 124 (151)
T ss_dssp SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT------------------------------------GS
T ss_pred eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc------------------------------------CC
Confidence 99999999999988 678999999999999999999776 34
Q ss_pred HHHHHHHHHHHHhcHHHHHHHhhhCC
Q psy6801 166 PEAIKKRLETFDQTIKPLLDYYDNRE 191 (228)
Q Consensus 166 ~~~~~~~~~~y~~~~~~~~~~~~~~~ 191 (228)
.+.+++|+..|++++.++.++|++.+
T Consensus 125 ~~~i~~Rl~~y~~~~~~i~~~y~~~g 150 (151)
T PF00406_consen 125 EEVIKKRLEEYRENTEPILDYYKEQG 150 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77899999999999999999998765
No 22
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.97 E-value=5.5e-28 Score=186.95 Aligned_cols=181 Identities=30% Similarity=0.582 Sum_probs=157.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc---C
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL---K 83 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~ 83 (228)
.++|+|+|+|||||||+|+.|++.+|+.+++.++++++.+...++.++.+...+..+..++...+...+...+... +
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTS 82 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcC
Confidence 3579999999999999999999999999999999999988777888888888999898888888888877776553 7
Q ss_pred CceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCC
Q psy6801 84 CNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDD 163 (228)
Q Consensus 84 ~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 163 (228)
.+||+||||++..|+..+......|+.+|+|++|++++.+|+..|.. .. .+.+
T Consensus 83 ~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~--~~-------------------------~r~d 135 (188)
T TIGR01360 83 KGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE--TS-------------------------GRVD 135 (188)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc--cC-------------------------CCCC
Confidence 78999999999999999887656799999999999999999999831 01 1456
Q ss_pred CcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 164 DKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
+..+.+.+++..|+.+..++.++|...+.++.||++.+ +++++.|...|..
T Consensus 136 ~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 136 DNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 67888999999999999999999987778899999999 9999999998853
No 23
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.3e-28 Score=187.80 Aligned_cols=170 Identities=39% Similarity=0.752 Sum_probs=156.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCN 85 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 85 (228)
++|+|.|+|||||||+|+.|+++++++|++++++++..+...+++++.++.++..|..+++.++..++..++... ..+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999875 238
Q ss_pred eEEcCCCCCHHHHHHHHhc----CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccC
Q psy6801 86 YLLDGFPRTYDQAMALFKN----HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQR 161 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~~~----~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~ 161 (228)
+|+||||++..|+..+... +..++.++.+.++.+.+..|+..|.. |
T Consensus 81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~------------------------------r 130 (178)
T COG0563 81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV------------------------------R 130 (178)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc------------------------------c
Confidence 9999999999999988743 67889999999999999999999932 5
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHH
Q psy6801 162 DDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l 212 (228)
.++.++.+++|+..|.+.+.++..+|. ++||+..+ +++++.+.+.+
T Consensus 131 ~dd~~~~~~~R~~~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 131 EDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ccCCHHHHHHHHHHHHhcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence 688999999999999999999999997 89999999 99999998765
No 24
>PRK13974 thymidylate kinase; Provisional
Probab=99.79 E-value=4.6e-18 Score=133.95 Aligned_cols=174 Identities=18% Similarity=0.210 Sum_probs=116.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeeh--hHHHHHHHhccChhhHHHHHHHHCC--CCCChHHHHHH-------
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT--GDILRSHIAQNTTLGLKAKEYMNKG--LLVPDDLMIDL------- 74 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------- 74 (228)
.+..|+|+|++||||||+++.|++.+....... .+.+....+.++++|+.+++++... ...++.....+
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~ 81 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA 81 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999985322100 0122222344678899999998632 22333322211
Q ss_pred ------HHHHHhccCCceEEc----------CCCCC--HHHHHHHH---hcCCCCCEEEEEEeCHHHHHHHHhcCccCCC
Q psy6801 75 ------VKNEVKDLKCNYLLD----------GFPRT--YDQAMALF---KNHLSPNCVMHINVPKEVIIDRLSKRWIHPA 133 (228)
Q Consensus 75 ------~~~~l~~~~~~~ild----------g~p~~--~~~~~~l~---~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~ 133 (228)
+...+.. +..+|.| |+|+. ..++..+. ..+..||++|||+||++++.+|+..|.
T Consensus 82 ~~~~~~i~~~l~~-g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~---- 156 (212)
T PRK13974 82 QHVSKIIRPALEN-GDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK---- 156 (212)
T ss_pred HHHHHHHHHHHHC-CCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc----
Confidence 1222222 3334444 55653 22344443 234679999999999999999988871
Q ss_pred CCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHH
Q psy6801 134 SGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 134 ~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l 212 (228)
++ .+..+...|.+.+.+...+|.+.+.+++||++++ ++|+++|.+.|
T Consensus 157 -----------------------------dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l 204 (212)
T PRK13974 157 -----------------------------PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETL 204 (212)
T ss_pred -----------------------------cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHH
Confidence 11 2344566777788888888887788999999999 99999999999
Q ss_pred hhcC
Q psy6801 213 NIRI 216 (228)
Q Consensus 213 ~~~~ 216 (228)
...+
T Consensus 205 ~~~~ 208 (212)
T PRK13974 205 LNNF 208 (212)
T ss_pred HHHH
Confidence 8755
No 25
>PRK01184 hypothetical protein; Provisional
Probab=99.79 E-value=4.1e-17 Score=125.83 Aligned_cols=173 Identities=20% Similarity=0.279 Sum_probs=113.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhc-cC-----hhhHHHHHHHHCCCCCChHHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQ-NT-----TLGLKAKEYMNKGLLVPDDLMIDLVKNEVK 80 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (228)
|++|+|+|+|||||||+++ +++++|+++++++|++++.+.. .. .++......... .....+...+...+.
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~ 76 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIR 76 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHH
Confidence 4589999999999999987 7889999999999999998642 21 244444333321 222344444455554
Q ss_pred cc-CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy6801 81 DL-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLI 159 (228)
Q Consensus 81 ~~-~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~ 159 (228)
.. +..+|+||+ +...+...+......+..+|++.||++++.+|+..|...
T Consensus 77 ~~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~---------------------------- 127 (184)
T PRK01184 77 EKGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRS---------------------------- 127 (184)
T ss_pred hcCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCC----------------------------
Confidence 43 677999999 687777777665223557999999999999999988210
Q ss_pred cCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCC
Q psy6801 160 QRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIP 217 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~ 217 (228)
....+.+.+.++...... ....+.+...+ +.|+++.+ +++.++|.+.+...+.
T Consensus 128 -~d~~~~~~~~~r~~~q~~--~~~~~~~~~ad--~vI~N~~~~~~l~~~v~~~~~~~~~ 181 (184)
T PRK01184 128 -DDPKSWEELEERDERELS--WGIGEVIALAD--YMIVNDSTLEEFRARVRKLLERILR 181 (184)
T ss_pred -CChhhHHHHHHHHHHHhc--cCHHHHHHhcC--EEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 001234555555544321 11233333332 35566767 9999999998876553
No 26
>PRK13973 thymidylate kinase; Provisional
Probab=99.79 E-value=2.3e-17 Score=130.06 Aligned_cols=179 Identities=18% Similarity=0.228 Sum_probs=110.8
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHh---Ccceeeh--------hHHHHHHHhcc--ChhhHHHHHHHHCCCCCChHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHF---NVKHIAT--------GDILRSHIAQN--TTLGLKAKEYMNKGLLVPDDLM 71 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~--------~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 71 (228)
|.++.|+|+|++||||||+++.|++++ |..++.+ ++.+|+.+... ..++......+-.+ ...+.+
T Consensus 1 m~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~ 78 (213)
T PRK13973 1 MRGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHV 78 (213)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHH
Confidence 346789999999999999999999999 7766654 55565554321 11222222122111 011223
Q ss_pred HHHHHHHHhccCCceEEcCCC----------C--CHHHHHHHHh---cCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCc
Q psy6801 72 IDLVKNEVKDLKCNYLLDGFP----------R--TYDQAMALFK---NHLSPNCVMHINVPKEVIIDRLSKRWIHPASGR 136 (228)
Q Consensus 72 ~~~~~~~l~~~~~~~ildg~p----------~--~~~~~~~l~~---~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~ 136 (228)
...+...+.+ +..+|.|.|- . ...++..+.. ....||++|||++|++++.+|+.+|......+
T Consensus 79 ~~~i~~~l~~-g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~- 156 (213)
T PRK13973 79 EEVIRPALAR-GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPD- 156 (213)
T ss_pred HHHHHHHHHC-CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccC-
Confidence 3445555554 5556667643 2 1234444443 22579999999999999999999983211000
Q ss_pred ccccCCCCCCCCCCCcccccccccCCC-CcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 137 VYNLDFNAPKKPGIDDITGEKLIQRDD-DKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 137 ~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
+.+ +..+.+++....|.+.. +++. +.+++||++++ ++|+++|...|..
T Consensus 157 ------------------------~~e~~~~~~~~~~~~~y~~l~----~~~~--~~~~~Ida~~~~e~V~~~I~~~i~~ 206 (213)
T PRK13973 157 ------------------------RFEKEDLAFHEKRREAFLQIA----AQEP--ERCVVIDATASPEAVAAEIWAAVDQ 206 (213)
T ss_pred ------------------------chhhchHHHHHHHHHHHHHHH----HhCC--CcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 111 23445555666665533 3332 35789999999 9999999999987
Q ss_pred cCC
Q psy6801 215 RIP 217 (228)
Q Consensus 215 ~~~ 217 (228)
.+.
T Consensus 207 ~~~ 209 (213)
T PRK13973 207 RLL 209 (213)
T ss_pred HHh
Confidence 664
No 27
>PRK06217 hypothetical protein; Validated
Probab=99.78 E-value=9.4e-18 Score=129.31 Aligned_cols=171 Identities=18% Similarity=0.332 Sum_probs=106.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCce
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
|++|+|+|++||||||+|+.|++.++++++++|++++.. .+.++ +...+.+.....+...+.. +.+|
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~ 67 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPF----------TTKRPPEERLRLLLEDLRP-REGW 67 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCc----------cccCCHHHHHHHHHHHHhc-CCCE
Confidence 357999999999999999999999999999999887532 11111 1112334444444555544 6789
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCcH
Q psy6801 87 LLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKP 166 (228)
Q Consensus 87 ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 166 (228)
|+||++... ...+. ..+|.+|||++|.+++.+|+.+|..++ .|+ |..++.+ .....
T Consensus 68 vi~G~~~~~--~~~~~---~~~d~~i~Ld~~~~~~~~Rl~~R~~~~-~~~--------~~~~~~~----------~e~~~ 123 (183)
T PRK06217 68 VLSGSALGW--GDPLE---PLFDLVVFLTIPPELRLERLRLREFQR-YGN--------RILPGGD----------MHKAS 123 (183)
T ss_pred EEEccHHHH--HHHHH---hhCCEEEEEECCHHHHHHHHHcCcccc-cCc--------ccCCCCC----------HHHHH
Confidence 999976542 22233 237899999999999999999995432 121 0000000 00111
Q ss_pred HHHHHHHHHHHh------cHHHHHHHhhh-CCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 167 EAIKKRLETFDQ------TIKPLLDYYDN-REVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 167 ~~~~~~~~~y~~------~~~~~~~~~~~-~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
..+.++...|.. .......++.. ...++.+++..+ +++.+.|...|.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 124 LEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred HHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 223333333432 22223334443 245778888888 9999999988854
No 28
>PRK03839 putative kinase; Provisional
Probab=99.77 E-value=2.4e-17 Score=126.67 Aligned_cols=150 Identities=18% Similarity=0.265 Sum_probs=96.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCce
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCNY 86 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 86 (228)
+|+|+|+|||||||+++.|++.++++++++|+++++.- ++..... .+ ......+...+.+. +.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~~---~~-----~~~~~~l~~~~~~~~~~~~v 68 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKDD---EM-----EIDFDKLAYFIEEEFKEKNV 68 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCCh---hh-----hcCHHHHHHHHHHhccCCCE
Confidence 69999999999999999999999999999999886531 1111000 01 11122223322221 5679
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCcH
Q psy6801 87 LLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKP 166 (228)
Q Consensus 87 ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 166 (228)
|+||+... . ..++.+|||+++++++.+|+..|... + ....
T Consensus 69 IidG~~~~---------l-~~~~~vi~L~~~~~~~~~Rl~~R~~~-----------------------------~-~~~~ 108 (180)
T PRK03839 69 VLDGHLSH---------L-LPVDYVIVLRAHPKIIKERLKERGYS-----------------------------K-KKIL 108 (180)
T ss_pred EEEecccc---------c-cCCCEEEEEECCHHHHHHHHHHcCCC-----------------------------H-HHHH
Confidence 99997432 1 35889999999999999999888210 0 0001
Q ss_pred HHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCC-CC-cchHHHHHHHHhhcC
Q psy6801 167 EAIKKRLETFDQTIKPLLDYYDNREVLDTFTGN-TT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 167 ~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~-~~-e~v~~~i~~~l~~~~ 216 (228)
+... ..+.. ..+.+.|.....+++||++ .+ +++++.|.+.|....
T Consensus 109 ~~~~---~~~~~--~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~~ 155 (180)
T PRK03839 109 ENVE---AELVD--VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKSGK 155 (180)
T ss_pred HHHH---HHHHH--HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 1111 11111 1223555555668899997 47 999999999987653
No 29
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.76 E-value=4.2e-17 Score=126.94 Aligned_cols=177 Identities=21% Similarity=0.299 Sum_probs=111.9
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCC-CCCChHH------------H
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKG-LLVPDDL------------M 71 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~ 71 (228)
|.++.|+|+|..||||||+++.|++.+....+++ +....+.++++|+.++..+.++ ..+.... +
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v---~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~ 77 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKV---VLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHL 77 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999999995544432 2222455688899999988875 2333321 1
Q ss_pred HHHHHHHHhccCCceEEcCCCCC------------HHHHHHHHhc---CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCc
Q psy6801 72 IDLVKNEVKDLKCNYLLDGFPRT------------YDQAMALFKN---HLSPNCVMHINVPKEVIIDRLSKRWIHPASGR 136 (228)
Q Consensus 72 ~~~~~~~l~~~~~~~ildg~p~~------------~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~ 136 (228)
...+...+.. +..+|+|.|-.+ ......+... +..||+++||++|+++..+|+.+|....
T Consensus 78 ~~~i~pal~~-g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~---- 152 (208)
T COG0125 78 EEVIKPALKE-GKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELR---- 152 (208)
T ss_pred HHHHHHhhcC-CCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCcc----
Confidence 1222222222 666777875433 2223333222 3479999999999999999999993210
Q ss_pred ccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 137 VYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 137 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
.+ -+..+. .-+.+-++.+..+...+.+ .+++||++.+ ++|.+.|...|...
T Consensus 153 -----------------------~r-~E~~~~--~f~~kvr~~Y~~la~~~~~--r~~vIda~~~~e~v~~~i~~~l~~~ 204 (208)
T COG0125 153 -----------------------DR-FEKEDD--EFLEKVREGYLELAAKFPE--RIIVIDASRPLEEVHEEILKILKER 204 (208)
T ss_pred -----------------------ch-hhhHHH--HHHHHHHHHHHHHHhhCCC--eEEEEECCCCHHHHHHHHHHHHHHh
Confidence 00 011111 1122333333444444432 4899999999 99999999999887
Q ss_pred CC
Q psy6801 216 IP 217 (228)
Q Consensus 216 ~~ 217 (228)
+.
T Consensus 205 l~ 206 (208)
T COG0125 205 LG 206 (208)
T ss_pred hc
Confidence 74
No 30
>PRK13949 shikimate kinase; Provisional
Probab=99.75 E-value=1e-16 Score=121.74 Aligned_cols=109 Identities=17% Similarity=0.291 Sum_probs=75.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHH-CCCCCChHHHHHHHHHHHhccCCce
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMN-KGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
.+|+|+|+|||||||+++.|++.++++++++|+++..... ..+...+. .|.....+....++.+ +.. ..++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~------~~~~~~~~~~g~~~fr~~e~~~l~~-l~~-~~~~ 73 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH------KTVGDIFAERGEAVFRELERNMLHE-VAE-FEDV 73 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC------ccHHHHHHHhCHHHHHHHHHHHHHH-HHh-CCCE
Confidence 4799999999999999999999999999999988766532 12222222 2322223333333333 332 4566
Q ss_pred EE-cC--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 87 LL-DG--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 87 il-dg--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
|+ +| ++....+...+... +++|||++|.+++.+|+..+
T Consensus 74 vis~Ggg~~~~~~~~~~l~~~----~~vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 74 VISTGGGAPCFFDNMELMNAS----GTTVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred EEEcCCcccCCHHHHHHHHhC----CeEEEEECCHHHHHHHHhcC
Confidence 66 43 66666666666543 68999999999999999854
No 31
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.74 E-value=1.9e-16 Score=118.38 Aligned_cols=161 Identities=21% Similarity=0.306 Sum_probs=101.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHC-CCCCChHHHHHHHHHHHhccCCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK-GLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
++.|+++|++||||||+++.||+.++++++|+|.++.+... ..+.+.+.. |+.-....-..++.+.+. ..+
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g------~sI~eIF~~~GE~~FR~~E~~vl~~l~~--~~~ 73 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG------MSIAEIFEEEGEEGFRRLETEVLKELLE--EDN 73 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC------cCHHHHHHHHhHHHHHHHHHHHHHHHhh--cCC
Confidence 35699999999999999999999999999999999887633 444444443 432222223333333333 333
Q ss_pred eEE-cC--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCC
Q psy6801 86 YLL-DG--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRD 162 (228)
Q Consensus 86 ~il-dg--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~ 162 (228)
.|+ .| ...+......+... ..+|||++|.+++.+|+......| +.+..
T Consensus 74 ~ViaTGGG~v~~~enr~~l~~~----g~vv~L~~~~e~l~~Rl~~~~~RP-------------------------ll~~~ 124 (172)
T COG0703 74 AVIATGGGAVLSEENRNLLKKR----GIVVYLDAPFETLYERLQRDRKRP-------------------------LLQTE 124 (172)
T ss_pred eEEECCCccccCHHHHHHHHhC----CeEEEEeCCHHHHHHHhccccCCC-------------------------cccCC
Confidence 444 33 44455555666654 389999999999999999542221 12222
Q ss_pred CC---cHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 163 DD---KPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 163 ~~---~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
+. -.+.+.+|...|.+. . .+.++++.. +++.++|...+....
T Consensus 125 ~~~~~l~~L~~~R~~~Y~e~-----------a-~~~~~~~~~~~~v~~~i~~~l~~~~ 170 (172)
T COG0703 125 DPREELEELLEERQPLYREV-----------A-DFIIDTDDRSEEVVEEILEALEGSL 170 (172)
T ss_pred ChHHHHHHHHHHHHHHHHHh-----------C-cEEecCCCCcHHHHHHHHHHHHHhc
Confidence 22 123333444444332 1 456676666 899999998887654
No 32
>PRK13975 thymidylate kinase; Provisional
Probab=99.73 E-value=7.1e-16 Score=120.03 Aligned_cols=170 Identities=16% Similarity=0.230 Sum_probs=100.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHH-----------HHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMI-----------DLV 75 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 75 (228)
++.|+|+|++||||||+++.|+++++..+.. .+.++.+|+.+++++..+. ....... ..+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~--------~~~~~~~g~~ir~~~~~~~-~~~~~~~~~f~~~r~~~~~~i 72 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTC--------EPTDGKIGKLIREILSGSK-CDKETLALLFAADRVEHVKEI 72 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeE--------CCCCChHHHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999853211 0112334455555544331 1111100 111
Q ss_pred HHHHhccCCceEEcCCCCC-----------HHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCC
Q psy6801 76 KNEVKDLKCNYLLDGFPRT-----------YDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNA 144 (228)
Q Consensus 76 ~~~l~~~~~~~ildg~p~~-----------~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~ 144 (228)
...+. ...+|+|.|..+ ......+......|+++|||++|++++.+|+..|...
T Consensus 73 ~~~~~--~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~------------- 137 (196)
T PRK13975 73 EEDLK--KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKE------------- 137 (196)
T ss_pred HHHHc--CCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCcc-------------
Confidence 11121 456788876432 1112222222256999999999999999999988210
Q ss_pred CCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCC-CC-cchHHHHHHHHhhcCCCC
Q psy6801 145 PKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGN-TT-DEIWPRIYEHLNIRIPPL 219 (228)
Q Consensus 145 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~-~~-e~v~~~i~~~l~~~~~~~ 219 (228)
..+..+.+.+....|.+... ...|.....++.||++ .+ +++++.|.+.|...++.+
T Consensus 138 -----------------~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~~~~ 195 (196)
T PRK13975 138 -----------------IFEKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKIPDI 195 (196)
T ss_pred -----------------ccchHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhCCcc
Confidence 01122333334445544332 2223222347889986 67 999999999999888754
No 33
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.72 E-value=1.6e-15 Score=110.94 Aligned_cols=166 Identities=19% Similarity=0.298 Sum_probs=102.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhc-cChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCce
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQ-NTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
++|.|.|+|||||||+|+.||+++|+++++.++++|..-.. +.++.... .+-.....++..+-..+ .. +.. ..++
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~-~~AE~~p~iD~~iD~rq-~e-~a~-~~nv 76 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFS-RYAEEDPEIDKEIDRRQ-KE-LAK-EGNV 76 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHH-HHHhcCchhhHHHHHHH-HH-HHH-cCCe
Confidence 47999999999999999999999999999999999986432 22332222 22222322222222222 22 222 6789
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCcH
Q psy6801 87 LLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKP 166 (228)
Q Consensus 87 ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 166 (228)
|++|. .+.++.. ..+|+.|||.+|.++..+|+..|. ..+..
T Consensus 77 Vlegr-----LA~Wi~k--~~adlkI~L~Apl~vRa~Ria~RE--------------------------------gi~~~ 117 (179)
T COG1102 77 VLEGR-----LAGWIVR--EYADLKIWLKAPLEVRAERIAKRE--------------------------------GIDVD 117 (179)
T ss_pred EEhhh-----hHHHHhc--cccceEEEEeCcHHHHHHHHHHhc--------------------------------CCCHH
Confidence 99985 2233322 458999999999999999999992 11222
Q ss_pred HHHHHHHHHHHhcHHHHHHHhh----hCC-cEEEEeCCC-C-cchHHHHHHHHhhcC
Q psy6801 167 EAIKKRLETFDQTIKPLLDYYD----NRE-VLDTFTGNT-T-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 167 ~~~~~~~~~y~~~~~~~~~~~~----~~~-~~i~id~~~-~-e~v~~~i~~~l~~~~ 216 (228)
+.+.+-..+=..+.....++|. +-. .-++||++. + ++++.-|...+....
T Consensus 118 ~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~ 174 (179)
T COG1102 118 EALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALS 174 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhc
Confidence 2222222333333334455553 111 235677776 3 888888877776554
No 34
>PRK08356 hypothetical protein; Provisional
Probab=99.71 E-value=2.5e-16 Score=122.54 Aligned_cols=115 Identities=19% Similarity=0.331 Sum_probs=80.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhcc----C---hhhHH----HHHHHHCCCCCC----hHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQN----T---TLGLK----AKEYMNKGLLVP----DDLMI 72 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~----~---~~~~~----~~~~~~~~~~~~----~~~~~ 72 (228)
++|+|+|||||||||+|+.|+ ++|++++++++.++...... . +.+.. ...++..|..++ ..++.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~ 84 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILI 84 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHH
Confidence 479999999999999999996 58999999998654322111 0 11111 122333333333 24555
Q ss_pred HHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 73 DLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 73 ~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+.+.+.+.. ...+++||+ ++..|+..|... ...+||+++|++++.+|+..|
T Consensus 85 ~~~~~~~~~-~~~ividG~-r~~~q~~~l~~~---~~~vi~l~~~~~~~~~Rl~~R 135 (195)
T PRK08356 85 RLAVDKKRN-CKNIAIDGV-RSRGEVEAIKRM---GGKVIYVEAKPEIRFERLRRR 135 (195)
T ss_pred HHHHHHhcc-CCeEEEcCc-CCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHhc
Confidence 555555533 446999999 999999988764 247999999999999999998
No 35
>PLN02924 thymidylate kinase
Probab=99.71 E-value=9.1e-16 Score=121.13 Aligned_cols=169 Identities=17% Similarity=0.261 Sum_probs=105.9
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHH-----------H
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMI-----------D 73 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 73 (228)
++++.|+|+|.+||||||+++.|++.++...+.+ ...++ ....++.|+.+++++..+..+...... .
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~ 91 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRS 91 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999997655544 22222 223567888888877755333222111 1
Q ss_pred HHHHHHhccCCceEEcCCCCC-----------HHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCC
Q psy6801 74 LVKNEVKDLKCNYLLDGFPRT-----------YDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDF 142 (228)
Q Consensus 74 ~~~~~l~~~~~~~ildg~p~~-----------~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~ 142 (228)
.+...+.. +..+|+|.|..+ ..++..+......||++|||++|++++.+|...+ ++
T Consensus 92 ~I~pal~~-g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~------~~------ 158 (220)
T PLN02924 92 LMERKLKS-GTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYG------GE------ 158 (220)
T ss_pred HHHHHHHC-CCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC------cc------
Confidence 12233333 677888986543 2223334433457999999999999999985432 11
Q ss_pred CCCCCCCCCcccccccccCCCCcHHHHHHHH-HHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCC
Q psy6801 143 NAPKKPGIDDITGEKLIQRDDDKPEAIKKRL-ETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIP 217 (228)
Q Consensus 143 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~ 217 (228)
+ .+.. .+.+++ ..|. .+.+ ..+++||++.+ ++|+++|.+.|...+.
T Consensus 159 ------------------~-~E~~-~~~~rv~~~Y~----~la~-----~~~~vIDa~~sieeV~~~I~~~I~~~l~ 206 (220)
T PLN02924 159 ------------------R-YEKL-EFQKKVAKRFQ----TLRD-----SSWKIIDASQSIEEVEKKIREVVLDTVQ 206 (220)
T ss_pred ------------------c-cccH-HHHHHHHHHHH----HHhh-----cCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 0 0112 222222 2232 2221 23778899999 9999999999987664
No 36
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.68 E-value=1.7e-15 Score=118.58 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=96.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHC--CCCCChHHHH-------HH--
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK--GLLVPDDLMI-------DL-- 74 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~-- 74 (228)
+++.|+|+|++||||||+++.|++.++.....+ .+.. .......++.+...+.. ....+..... ..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~--~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 78 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDV--VFTR-EPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLE 78 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCce--eEee-CCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999873311110 0000 11124455555555542 1111111111 11
Q ss_pred --HHHHHhccCCceEEcCCCCC------------HHHHHHHHhc---CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcc
Q psy6801 75 --VKNEVKDLKCNYLLDGFPRT------------YDQAMALFKN---HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRV 137 (228)
Q Consensus 75 --~~~~l~~~~~~~ildg~p~~------------~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~ 137 (228)
+...+.. +..+|+|.++.+ ..+...+... ...||++|||++|++++.+|+.+|... .
T Consensus 79 ~~i~~~l~~-g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~---~-- 152 (205)
T PRK00698 79 EVIKPALAR-GKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL---D-- 152 (205)
T ss_pred HHHHHHHHC-CCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc---c--
Confidence 1122222 667888864432 1122233222 256999999999999999999999210 0
Q ss_pred cccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 138 YNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 138 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
+.......+.+++.. .+..+.+.+ ...+++||++.+ ++++++|.+.|..++
T Consensus 153 -----------------------~~~~~~~~~~~~~~~---~y~~~~~~~--~~~~~~Id~~~~~e~v~~~i~~~i~~~~ 204 (205)
T PRK00698 153 -----------------------RIEQEGLDFFERVRE---GYLELAEKE--PERIVVIDASQSLEEVHEDILAVIKAWL 204 (205)
T ss_pred -----------------------hhhhhhHHHHHHHHH---HHHHHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 000111122223322 122222222 234788999999 999999999987664
No 37
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.68 E-value=1.4e-15 Score=118.21 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=104.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCC-----CCCh-------------
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL-----LVPD------------- 68 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------------- 68 (228)
|.+|+|+|++||||||+++.|++ +|++++++|.+.++.+.++.+..+.+.+.+..+. .+..
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 35799999999999999999998 9999999999999988877777676666654321 1221
Q ss_pred -----HHHHHHHHHHHhcc-----C-CceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcc
Q psy6801 69 -----DLMIDLVKNEVKDL-----K-CNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRV 137 (228)
Q Consensus 69 -----~~~~~~~~~~l~~~-----~-~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~ 137 (228)
.+++..+...+.+. . ..+|+|.- .-.. ..+. -.+|.+|++++|+++..+|+.+|.
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~p-ll~e--~~~~---~~~D~vi~V~a~~e~~~~Rl~~R~-------- 146 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQEAESSPYVVLDIP-LLFE--NGLE---KLVDRVLVVDAPPETQLERLMARD-------- 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEeh-Hhhc--CCch---hhCCeEEEEECCHHHHHHHHHHcC--------
Confidence 11122222222221 1 34555651 1000 0111 237899999999999999999981
Q ss_pred cccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 138 YNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 138 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
+.+.+.+..++..+... .+.-... -++|+++.+ +++.+++...+..
T Consensus 147 -------------------------~~s~e~~~~ri~~Q~~~----~~~~~~a--d~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 147 -------------------------GLSEEEAEAIIASQMPR----EEKLARA--DDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred -------------------------CCCHHHHHHHHHHhCCH----HHHHHhC--CEEEECCCCHHHHHHHHHHHHHh
Confidence 23455666676654322 1111112 257788888 9999999887653
No 38
>PRK08118 topology modulation protein; Reviewed
Probab=99.67 E-value=5.8e-16 Score=117.44 Aligned_cols=100 Identities=23% Similarity=0.426 Sum_probs=74.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCce
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
|++|+|+|+|||||||+|+.|++.++++++++|+++... ....++++.+..++...+. ..+|
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~--~~~w 62 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK--EDEW 62 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc--CCCE
Confidence 358999999999999999999999999999998886421 1123344444444444343 6789
Q ss_pred EEcC-CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCcc
Q psy6801 87 LLDG-FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWI 130 (228)
Q Consensus 87 ildg-~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 130 (228)
|+|| |+.+... .+. .+|.+|||++|.+++..|+.+|..
T Consensus 63 VidG~~~~~~~~--~l~----~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 63 IIDGNYGGTMDI--RLN----AADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred EEeCCcchHHHH--HHH----hCCEEEEEeCCHHHHHHHHHHHHH
Confidence 9999 5544432 222 379999999999999999999954
No 39
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.66 E-value=2.3e-15 Score=117.03 Aligned_cols=116 Identities=22% Similarity=0.294 Sum_probs=69.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcc---eeehhHHHHHHHhccChhhHHHHHHHHCCC--CCChHH----------
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVK---HIATGDILRSHIAQNTTLGLKAKEYMNKGL--LVPDDL---------- 70 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------- 70 (228)
.++.|+|+|++||||||+++.|++.++.. ++-+ .....+++++.+++++..+. ......
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~ 75 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT------REPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRH 75 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999998542 2211 01123455666666544322 112111
Q ss_pred --HHHHHHHHHhccCCceEEcCCCCC------------HHHHHHHHhcCCC--CCEEEEEEeCHHHHHHHHhcC
Q psy6801 71 --MIDLVKNEVKDLKCNYLLDGFPRT------------YDQAMALFKNHLS--PNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 71 --~~~~~~~~l~~~~~~~ildg~p~~------------~~~~~~l~~~~~~--~~~vi~l~~~~e~~~~R~~~R 128 (228)
+...+...+.. +..+|+|.+..+ ..+...+...... ||++|||++|++.+.+|+..|
T Consensus 76 ~~~~~~i~~~l~~-~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r 148 (195)
T TIGR00041 76 EHLEDKIKPALAE-GKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKR 148 (195)
T ss_pred HHHHHHHHHHHhC-CCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 11122222222 556777854222 2233333333233 999999999999999999998
No 40
>PRK08233 hypothetical protein; Provisional
Probab=99.65 E-value=2.5e-15 Score=115.40 Aligned_cols=169 Identities=18% Similarity=0.290 Sum_probs=93.1
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCc-ceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc-
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNV-KHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL- 82 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 82 (228)
|.+++|+|.|+|||||||+|+.|++.++. .++..|++ +... ...........+... .......+...+...
T Consensus 1 ~~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~-~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~ 73 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY-DFDN-----CPEDICKWIDKGANY-SEWVLTPLIKDIQELI 73 (182)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE-Eccc-----CchhhhhhhhccCCh-hhhhhHHHHHHHHHHH
Confidence 45678999999999999999999999963 33333322 1100 001122222333222 222222222223221
Q ss_pred -CC--ceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy6801 83 -KC--NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLI 159 (228)
Q Consensus 83 -~~--~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~ 159 (228)
.. .+|+..+|..... ..+.. .+|++|||++|.+++.+|+.+|...
T Consensus 74 ~~~~~~~vivd~~~~~~~-~~~~~---~~d~~i~l~~~~~~~~~R~~~R~~~---------------------------- 121 (182)
T PRK08233 74 AKSNVDYIIVDYPFAYLN-SEMRQ---FIDVTIFIDTPLDIAMARRILRDFK---------------------------- 121 (182)
T ss_pred cCCCceEEEEeeehhhcc-HHHHH---HcCEEEEEcCCHHHHHHHHHHHHhh----------------------------
Confidence 22 4555434432211 12222 2789999999999999998877311
Q ss_pred cCCCCcHHHHHHHHHHHHhcHHHH-HHHhhh--CCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 160 QRDDDKPEAIKKRLETFDQTIKPL-LDYYDN--REVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~--~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
+...+.+.+++..|.....+. .+++.. ....++||++.+ ++++++|...|...
T Consensus 122 ---~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~~ 178 (182)
T PRK08233 122 ---EDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYRR 178 (182)
T ss_pred ---hccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHhC
Confidence 011123344455555443332 222221 233567999988 99999999988754
No 41
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.65 E-value=9.5e-15 Score=113.93 Aligned_cols=162 Identities=14% Similarity=0.171 Sum_probs=107.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCCh-----HH------------
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD-----DL------------ 70 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------ 70 (228)
++|.|+|++||||||+++.|++ +|+++++.|++.+..+.++.+..+.+...+..+...++ ..
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4799999999999999999987 89999999999999988888777777777755433221 00
Q ss_pred ------HHHHH----HHHHhcc---CCceEEcCCCCCHHHHHHHHhcCC--CCCEEEEEEeCHHHHHHHHhcCccCCCCC
Q psy6801 71 ------MIDLV----KNEVKDL---KCNYLLDGFPRTYDQAMALFKNHL--SPNCVMHINVPKEVIIDRLSKRWIHPASG 135 (228)
Q Consensus 71 ------~~~~~----~~~l~~~---~~~~ildg~p~~~~~~~~l~~~~~--~~~~vi~l~~~~e~~~~R~~~R~~~~~~g 135 (228)
++..+ ...+... +..+++-..| .+.+.+. .+|.+||+++|.++..+|+..|.
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~p-------lL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~------ 147 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMP-------LLVEKGLDRKMDLVVVVDVDVEERVRRLVEKR------ 147 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEee-------ceeEcCccccCCeEEEEECCHHHHHHHHHHcC------
Confidence 11111 1111111 1122222211 1222222 47999999999999999999981
Q ss_pred cccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 136 RVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
+-+.+.+.+++..+...... .... .++|+++.+ +++.+++...+..
T Consensus 148 ---------------------------g~s~e~~~~ri~~Q~~~~~k----~~~a--d~vI~N~g~~e~l~~~v~~~~~~ 194 (200)
T PRK14734 148 ---------------------------GLDEDDARRRIAAQIPDDVR----LKAA--DIVVDNNGTREQLLAQVDGLIAE 194 (200)
T ss_pred ---------------------------CCCHHHHHHHHHhcCCHHHH----HHhC--CEEEECcCCHHHHHHHHHHHHHH
Confidence 23456777777666544221 1222 357888888 9999999988776
Q ss_pred cC
Q psy6801 215 RI 216 (228)
Q Consensus 215 ~~ 216 (228)
.+
T Consensus 195 ~~ 196 (200)
T PRK14734 195 IL 196 (200)
T ss_pred HH
Confidence 65
No 42
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.64 E-value=6.5e-15 Score=114.42 Aligned_cols=161 Identities=14% Similarity=0.169 Sum_probs=103.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCC------CChH------------
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLL------VPDD------------ 69 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~------------ 69 (228)
++|+|+|++||||||+++.|++.+|+++++.|++.+..+..+.+....+...+..... +...
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 4799999999999999999999999999999999999988888888777777643211 1111
Q ss_pred ------HHHHHHHHHHh----cc--CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcc
Q psy6801 70 ------LMIDLVKNEVK----DL--KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRV 137 (228)
Q Consensus 70 ------~~~~~~~~~l~----~~--~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~ 137 (228)
+++..+...+. .. ...+|+|. |-... ..+.. .+|.+|+++||.+++.+|+..|.
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~-pll~E--~~~~~---~~D~ii~V~a~~e~r~~Rl~~R~-------- 147 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI-PLLFE--AKLTD---LCSEIWVVDCSPEQQLQRLIKRD-------- 147 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe-HHhcC--cchHh---CCCEEEEEECCHHHHHHHHHHcC--------
Confidence 11111222222 11 22344443 11100 01221 37899999999999999999992
Q ss_pred cccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 138 YNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 138 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
+.+.+.+.+++.... +....-... -++|+++.+ +++.+++.+.+.
T Consensus 148 -------------------------g~s~e~~~~ri~~Q~----~~~~k~~~a--D~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 148 -------------------------GLTEEEAEARINAQW----PLEEKVKLA--DVVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred -------------------------CCCHHHHHHHHHhCC----CHHHHHhhC--CEEEECCCCHHHHHHHHHHHHh
Confidence 224456666665422 111111112 246788888 999999987653
No 43
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.64 E-value=1.9e-15 Score=125.18 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=100.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
+.+|++.|+|||||||+|+.|++++ +..+++.|++ +..+....+.+.. .+...+...........+...+.. +..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~-g~~ 77 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALKS-GKS 77 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHHc-CCe
Confidence 4579999999999999999999999 8999999665 4443222111110 000000000011222333333444 788
Q ss_pred eEEcCCCCCHHHHHHHHhc--CCCCCE-EEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCC
Q psy6801 86 YLLDGFPRTYDQAMALFKN--HLSPNC-VMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRD 162 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~~~--~~~~~~-vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~ 162 (228)
+|+|+++....+...+... .....+ +|+|.+|.+++.+|+.+|.. .
T Consensus 78 vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~-------------------------------~ 126 (300)
T PHA02530 78 VIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGE-------------------------------R 126 (300)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCc-------------------------------C
Confidence 9999988876666655332 022333 69999999999999999921 1
Q ss_pred CCcHHHHH---HHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC
Q psy6801 163 DDKPEAIK---KRLETFDQTIKPLLDYYDNREVLDTFTGNTT 201 (228)
Q Consensus 163 ~~~~~~~~---~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~ 201 (228)
....+.+. +++..|...+.++...+.....++.+|.+.+
T Consensus 127 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgt 168 (300)
T PHA02530 127 AVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGT 168 (300)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCc
Confidence 12334444 7788888887788666665455677777666
No 44
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.64 E-value=5.1e-14 Score=109.46 Aligned_cols=166 Identities=18% Similarity=0.240 Sum_probs=92.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh---CcceeehhHHHHHHHhccChhhHHHHHHHHCCC---CCChHH-----------
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF---NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL---LVPDDL----------- 70 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------- 70 (228)
+.|+|+|++||||||+++.|++.+ |..++.... ....+.++.++.++..+. ..+...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 469999999999999999999998 444443311 112233445555544321 111110
Q ss_pred HHHHHHHHHhccCCceEEcCCCCC------------HHHHHH---HHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCC
Q psy6801 71 MIDLVKNEVKDLKCNYLLDGFPRT------------YDQAMA---LFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASG 135 (228)
Q Consensus 71 ~~~~~~~~l~~~~~~~ildg~p~~------------~~~~~~---l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g 135 (228)
....+...+.. +..+|+|.++.+ ..+... +......|+.+|||++|++++.+|+.+|....
T Consensus 75 ~~~~~~~~~~~-~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~--- 150 (200)
T cd01672 75 VEEVIKPALAR-GKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDD--- 150 (200)
T ss_pred HHHHHHHHHhC-CCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc---
Confidence 00111112222 667888865432 112222 22223579999999999999999999983110
Q ss_pred cccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 136 RVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
........+.+++ ...+..+...+. ..+++||++.+ ++++++|...|.
T Consensus 151 -------------------------~~~~~~~~~~~~~---~~~y~~~~~~~~--~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 151 -------------------------RDEQEGLEFHERV---REGYLELAAQEP--ERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred -------------------------hhhhhhHHHHHHH---HHHHHHHHHhCC--CeEEEEeCCCCHHHHHHHHHHHHh
Confidence 0001111222222 222223333321 24789999999 999999998774
No 45
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.62 E-value=3.8e-14 Score=107.93 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=67.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHH-CCCCCChHHHHHHHHHHHhcc-CCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMN-KGLLVPDDLMIDLVKNEVKDL-KCN 85 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~-~~~ 85 (228)
..|+|+|++||||||+++.|++.+|+++++.|.++..... ... .+++. .| ...+.......+... ...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g--~~~----~~~~~~~g----~~~~~~~e~~~~~~~~~~~ 72 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN--MTV----AEIVEREG----WAGFRARESAALEAVTAPS 72 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC--CCH----HHHHHHHC----HHHHHHHHHHHHHHhcCCC
Confidence 3589999999999999999999999999999888765431 111 12221 12 111222111212111 333
Q ss_pred eEEc-C--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 86 YLLD-G--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 86 ~ild-g--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+|+. | ++........+.. .+++|||++|++++.+|+..|
T Consensus 73 ~vi~~ggg~vl~~~~~~~l~~----~~~~v~l~~~~~~~~~Rl~~r 114 (171)
T PRK03731 73 TVIATGGGIILTEENRHFMRN----NGIVIYLCAPVSVLANRLEAN 114 (171)
T ss_pred eEEECCCCccCCHHHHHHHHh----CCEEEEEECCHHHHHHHHccc
Confidence 4443 3 4444444444433 467999999999999999887
No 46
>PRK13947 shikimate kinase; Provisional
Probab=99.62 E-value=3.7e-14 Score=107.98 Aligned_cols=109 Identities=24% Similarity=0.328 Sum_probs=69.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHC-CCCCChHHHHHHHHHHHhccCCce
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK-GLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
..|+|.|+|||||||+|+.|++.+++++++.|.+++... |..+.+++.. |.....+....+ ...+.. ...+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~------g~~~~~~~~~~ge~~~~~~e~~~-~~~l~~-~~~~ 73 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT------GMTVAEIFEKDGEVRFRSEEKLL-VKKLAR-LKNL 73 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc------CCcHHHHHHHhChHHHHHHHHHH-HHHHhh-cCCe
Confidence 369999999999999999999999999999988876652 1112222221 211111111122 222322 3344
Q ss_pred EEc-C--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 87 LLD-G--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 87 ild-g--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
|+. | ++........+... +.+|||+++++.+.+|+..|
T Consensus 74 vi~~g~g~vl~~~~~~~l~~~----~~vv~L~~~~~~l~~Rl~~r 114 (171)
T PRK13947 74 VIATGGGVVLNPENVVQLRKN----GVVICLKARPEVILRRVGKK 114 (171)
T ss_pred EEECCCCCcCCHHHHHHHHhC----CEEEEEECCHHHHHHHhcCC
Confidence 443 2 44444455555543 47999999999999999877
No 47
>PRK04040 adenylate kinase; Provisional
Probab=99.61 E-value=6.2e-14 Score=108.22 Aligned_cols=117 Identities=18% Similarity=0.286 Sum_probs=72.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh--CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF--NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-- 82 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 82 (228)
|++|+|+|+|||||||+++.|++.+ ++.+++.+++++....... +.. ..+.+..-..-....+...+...+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g-~~~-~~d~~r~l~~~~~~~~~~~a~~~i~~~~~ 79 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEG-LVE-HRDEMRKLPPEEQKELQREAAERIAEMAG 79 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcC-CCC-CHHHHhhCChhhhHHHHHHHHHHHHHhhc
Confidence 5689999999999999999999999 8999999999877543221 100 001111111111112233334444333
Q ss_pred CCceEEcCCCCCHH--------HHHHHHhcCCCCCEEEEEEeCHHHHHHHHhc
Q psy6801 83 KCNYLLDGFPRTYD--------QAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127 (228)
Q Consensus 83 ~~~~ildg~p~~~~--------~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~ 127 (228)
...+|+||+..... ....+. . ..|+.+|++.++++++.+|..+
T Consensus 80 ~~~~~~~~h~~i~~~~g~~~~~~~~~~~-~-l~pd~ii~l~a~p~~i~~Rrl~ 130 (188)
T PRK04040 80 EGPVIVDTHATIKTPAGYLPGLPEWVLE-E-LNPDVIVLIEADPDEILMRRLR 130 (188)
T ss_pred CCCEEEeeeeeeccCCCCcCCCCHHHHh-h-cCCCEEEEEeCCHHHHHHHHhc
Confidence 44588998532100 111122 2 5799999999999998888774
No 48
>PRK13948 shikimate kinase; Provisional
Probab=99.61 E-value=3.4e-14 Score=108.84 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=69.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHC-CCCCChHHHHHHHHHHHhccCCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK-GLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
+..|+++|++||||||+++.|++.++.+++++|.++.+... ..+.+.+.. |+....+....++...+. ..+
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g------~si~~if~~~Ge~~fR~~E~~~l~~l~~--~~~ 81 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG------KSIPEIFRHLGEAYFRRCEAEVVRRLTR--LDY 81 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh------CCHHHHHHHhCHHHHHHHHHHHHHHHHh--cCC
Confidence 46799999999999999999999999999999888776543 223333332 321111222222222222 344
Q ss_pred eEEc---CCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhc
Q psy6801 86 YLLD---GFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127 (228)
Q Consensus 86 ~ild---g~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~ 127 (228)
.|+. |.+........+... ..+|||++|++++.+|+..
T Consensus 82 ~VIa~GgG~v~~~~n~~~l~~~----g~vV~L~~~~e~l~~Rl~~ 122 (182)
T PRK13948 82 AVISLGGGTFMHEENRRKLLSR----GPVVVLWASPETIYERTRP 122 (182)
T ss_pred eEEECCCcEEcCHHHHHHHHcC----CeEEEEECCHHHHHHHhcC
Confidence 4553 333333344444432 4689999999999999953
No 49
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.61 E-value=3.4e-14 Score=105.42 Aligned_cols=153 Identities=16% Similarity=0.245 Sum_probs=97.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCceE
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNYL 87 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 87 (228)
|+|+|+|.||+||||+|++|+ .+|..+++..+++.+.-.. .+... ......+..+.+...+...+. ..+.|
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~-~~~de-----~r~s~~vD~d~~~~~le~~~~--~~~~I 71 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLY-TEYDE-----LRKSVIVDVDKLRKRLEELLR--EGSGI 71 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCe-eccCC-----ccceEEeeHHHHHHHHHHHhc--cCCeE
Confidence 579999999999999999999 8999999998887664110 00000 000112333344444444332 67889
Q ss_pred EcCCCCCHHHHHHHHhcCCC-CCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCcH
Q psy6801 88 LDGFPRTYDQAMALFKNHLS-PNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKP 166 (228)
Q Consensus 88 ldg~p~~~~~~~~l~~~~~~-~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 166 (228)
+|++- ... ++ +|++|.|+++++++.+|++.|.. .+..-.
T Consensus 72 vd~H~---------~hl-~~~~dlVvVLR~~p~~L~~RLk~RGy------------------------------~~eKI~ 111 (180)
T COG1936 72 VDSHL---------SHL-LPDCDLVVVLRADPEVLYERLKGRGY------------------------------SEEKIL 111 (180)
T ss_pred eechh---------hhc-CCCCCEEEEEcCCHHHHHHHHHHcCC------------------------------CHHHHH
Confidence 99962 222 33 89999999999999999999921 112223
Q ss_pred HHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC--cchHHHHHHHHhh
Q psy6801 167 EAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT--DEIWPRIYEHLNI 214 (228)
Q Consensus 167 ~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~--e~v~~~i~~~l~~ 214 (228)
+++...+..- -.....+++ ..++.||.+.- +++.+.|...+..
T Consensus 112 ENveAEi~~v--i~~EA~E~~---~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 112 ENVEAEILDV--ILIEAVERF---EAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred HHHHHHHHHH--HHHHHHHhc---CceEEEECCCCCHHHHHHHHHHHHcc
Confidence 3333332111 111223333 34788888874 9999999999984
No 50
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.60 E-value=2e-13 Score=103.73 Aligned_cols=111 Identities=23% Similarity=0.333 Sum_probs=71.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhcc-ChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCce
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQN-TTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
++|+|.|++||||||+|+.|++.+|+++++.+++++...... .+.. .+.........+ ...+...+...... +..+
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~~~ 77 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLI-EFLNYAEENPEI-DKKIDRRIHEIALK-EKNV 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHH-HHHHHHhcCcHH-HHHHHHHHHHHHhc-CCCE
Confidence 379999999999999999999999999999988877654321 1111 111111111111 11222222222212 5679
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 87 LLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 87 ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
|++|....+. + ...++++|||++|++++.+|+..|
T Consensus 78 Vi~g~~~~~~----~---~~~~d~~v~v~a~~~~r~~R~~~R 112 (171)
T TIGR02173 78 VLESRLAGWI----V---REYADVKIWLKAPLEVRARRIAKR 112 (171)
T ss_pred EEEeccccee----e---cCCcCEEEEEECCHHHHHHHHHHc
Confidence 9998532211 1 134779999999999999999998
No 51
>PRK13946 shikimate kinase; Provisional
Probab=99.60 E-value=1.5e-13 Score=105.97 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=70.1
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCC
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKC 84 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (228)
+.+..|+++|++||||||+++.|++.+|+++++.|.++.... +......+.. .|..........++...+.. ..
T Consensus 8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~~-~~ 81 (184)
T PRK13946 8 LGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLKG-GP 81 (184)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhc-CC
Confidence 345689999999999999999999999999999987765543 2222222211 12111112222333332222 33
Q ss_pred ceEEcCC--CCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 85 NYLLDGF--PRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 85 ~~ildg~--p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.+|..|. .........+.. -.++|||++|++++.+|+..|
T Consensus 82 ~Vi~~ggg~~~~~~~r~~l~~----~~~~v~L~a~~e~~~~Rl~~r 123 (184)
T PRK13946 82 LVLATGGGAFMNEETRAAIAE----KGISVWLKADLDVLWERVSRR 123 (184)
T ss_pred eEEECCCCCcCCHHHHHHHHc----CCEEEEEECCHHHHHHHhcCC
Confidence 3444432 233333333433 257899999999999999988
No 52
>PRK04182 cytidylate kinase; Provisional
Probab=99.60 E-value=6.9e-14 Score=107.16 Aligned_cols=110 Identities=23% Similarity=0.380 Sum_probs=69.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhcc-ChhhHHHHHHHHCCCCCChHHHHHHHHHHHh-ccCCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQN-TTLGLKAKEYMNKGLLVPDDLMIDLVKNEVK-DLKCN 85 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 85 (228)
++|+|.|++||||||+|+.|++.+|+++++++++++...... ..... +......... ....+...+. .+. . +.+
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~~~~~~~~-~~~~~-~~~ 76 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEE-FNKYAEEDPE-IDKEIDRRQL-EIAEK-EDN 76 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHH-HHHHhhcCch-HHHHHHHHHH-HHHhc-CCC
Confidence 379999999999999999999999999999988887754321 12111 1111111110 0111222222 222 2 567
Q ss_pred eEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 86 YLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+|++|.-... +.. ..++++|||++|++++.+|+..|
T Consensus 77 ~Vi~g~~~~~-----~~~--~~~~~~V~l~a~~e~~~~Rl~~r 112 (180)
T PRK04182 77 VVLEGRLAGW-----MAK--DYADLKIWLKAPLEVRAERIAER 112 (180)
T ss_pred EEEEEeecce-----Eec--CCCCEEEEEECCHHHHHHHHHhc
Confidence 8898832111 111 11678999999999999999988
No 53
>PRK00625 shikimate kinase; Provisional
Probab=99.59 E-value=5.7e-14 Score=106.88 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=69.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHC-CCCCChHHHHHHHHHHHhcc--CCc
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK-GLLVPDDLMIDLVKNEVKDL--KCN 85 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~--~~~ 85 (228)
.|+|+|+|||||||+++.|++.++++++++|+++++..... ....+.+.+.. |. +.+...-...+... ...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge----~~fr~~E~~~l~~l~~~~~ 75 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGE----EGFCREEFLALTSLPVIPS 75 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCH----HHHHHHHHHHHHHhccCCe
Confidence 59999999999999999999999999999999988754321 00112222222 21 22222211222211 333
Q ss_pred eEEcC--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 86 YLLDG--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 86 ~ildg--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+|..| .+........+.. ...+|||++|.+++.+|+..|
T Consensus 76 VIs~GGg~~~~~e~~~~l~~----~~~Vv~L~~~~e~l~~Rl~~R 116 (173)
T PRK00625 76 IVALGGGTLMIEPSYAHIRN----RGLLVLLSLPIATIYQRLQKR 116 (173)
T ss_pred EEECCCCccCCHHHHHHHhc----CCEEEEEECCHHHHHHHHhcC
Confidence 44343 3333433444432 357999999999999999988
No 54
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.59 E-value=5.2e-15 Score=114.30 Aligned_cols=159 Identities=17% Similarity=0.227 Sum_probs=91.7
Q ss_pred EEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHH------------HHHHHHHHH
Q psy6801 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL------------MIDLVKNEV 79 (228)
Q Consensus 12 i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l 79 (228)
|+|.+||||||+++.|++.+....+.+ +.......+++|..+++.+.......... +...+...+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~---~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l 77 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKV---IITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL 77 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEE---EEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999984433220 00001234566777777776332222211 112223333
Q ss_pred hccCCceEEcCCCC------------CHHHHHHHHhcCC--CCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCC
Q psy6801 80 KDLKCNYLLDGFPR------------TYDQAMALFKNHL--SPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAP 145 (228)
Q Consensus 80 ~~~~~~~ildg~p~------------~~~~~~~l~~~~~--~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p 145 (228)
.+ +..+|+|.|.. .......+..... .||++|||++++++..+|+..|..
T Consensus 78 ~~-g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~--------------- 141 (186)
T PF02223_consen 78 KR-GKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE--------------- 141 (186)
T ss_dssp HT-TSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS---------------
T ss_pred cC-CCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc---------------
Confidence 33 67788886311 1233333333223 799999999999999999999932
Q ss_pred CCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHH
Q psy6801 146 KKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRI 208 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i 208 (228)
..+........+..++..+..+.+ ..+.+++||++.+ ++|+++|
T Consensus 142 ----------------~~~~~~~~~~~~~~~~~~y~~l~~---~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 142 ----------------KDDEEEEDLEYLRRVREAYLELAK---DPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp ----------------TTTTTTHHHHHHHHHHHHHHHHHH---TTTTEEEEETTS-HHHHHHHH
T ss_pred ----------------cchHHHHHHHHHHHHHHHHHHHHc---CCCCEEEEECCCCHHHHHhhC
Confidence 011111222223344444444433 3456899999999 9999876
No 55
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.58 E-value=1e-13 Score=107.57 Aligned_cols=165 Identities=20% Similarity=0.258 Sum_probs=106.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCCh------------------
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD------------------ 68 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 68 (228)
|++|.++|.+||||||+|+.+++ +|++++++|+++|+.+.++.+....+...+.....-.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 56899999999999999999999 99999999999999888776665555555442211011
Q ss_pred -----HHHHHHHHHHHh---cc-CCceEEcCCCCCHHHHHHHHhcCC--CCCEEEEEEeCHHHHHHHHhcCccCCCCCcc
Q psy6801 69 -----DLMIDLVKNEVK---DL-KCNYLLDGFPRTYDQAMALFKNHL--SPNCVMHINVPKEVIIDRLSKRWIHPASGRV 137 (228)
Q Consensus 69 -----~~~~~~~~~~l~---~~-~~~~ildg~p~~~~~~~~l~~~~~--~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~ 137 (228)
.+...++...+. .. ..++++--. ..|.+.+. .+|.+|++.||+++..+|+.+|
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~ei-------plL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R--------- 144 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEI-------PLLFEAGGEKYFDKVIVVYAPPEIRLERLMKR--------- 144 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEc-------hHHHhccccccCCEEEEEECCHHHHHHHHHhc---------
Confidence 111111112211 00 222232222 23333322 2789999999999999999999
Q ss_pred cccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 138 YNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 138 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
...+.+....++.......+. +... -++++++.+ +.+.+++...+....
T Consensus 145 ------------------------~~~~~e~~~~~~~~Q~~~~ek----~~~a--d~vi~n~~~i~~l~~~i~~~~~~~~ 194 (201)
T COG0237 145 ------------------------DGLDEEDAEARLASQRDLEEK----LALA--DVVIDNDGSIENLLEQIEKLLKELL 194 (201)
T ss_pred ------------------------CCCCHHHHHHHHHhcCCHHHH----Hhhc--CChhhcCCCHHHHHHHHHHHHHHHH
Confidence 134566666666555443332 2222 346888888 889999998888766
Q ss_pred CC
Q psy6801 217 PP 218 (228)
Q Consensus 217 ~~ 218 (228)
..
T Consensus 195 ~~ 196 (201)
T COG0237 195 GL 196 (201)
T ss_pred hh
Confidence 43
No 56
>PLN02422 dephospho-CoA kinase
Probab=99.58 E-value=6.2e-14 Score=110.90 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=102.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCC-----CCCh--------------
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL-----LVPD-------------- 68 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------------- 68 (228)
++|+|+|.+||||||+++.|+ ++|++++++|++.++.+.++.+....+.+.+.... .+..
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 469999999999999999998 58999999999999998887765555555543211 1121
Q ss_pred ----HHHHHHHHHHHh----cc---C-CceEEcCCCCCHHHHHHHHhcC--CCCCEEEEEEeCHHHHHHHHhcCccCCCC
Q psy6801 69 ----DLMIDLVKNEVK----DL---K-CNYLLDGFPRTYDQAMALFKNH--LSPNCVMHINVPKEVIIDRLSKRWIHPAS 134 (228)
Q Consensus 69 ----~~~~~~~~~~l~----~~---~-~~~ildg~p~~~~~~~~l~~~~--~~~~~vi~l~~~~e~~~~R~~~R~~~~~~ 134 (228)
.+++..+...+. .. + ..+|+|. | .+.+.+ ..+|.+|++++|.++..+|+.+|.
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei-p-------LL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~----- 147 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI-P-------LLFETKMDKWTKPVVVVWVDPETQLERLMARD----- 147 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe-h-------hhhhcchhhhCCEEEEEECCHHHHHHHHHHcC-----
Confidence 111122222221 10 2 2344443 1 111111 237999999999999999999992
Q ss_pred CcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 135 GRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 135 g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
+-+.+.+.++++...... +.-... -++|+++.+ +++.+++...+.
T Consensus 148 ----------------------------g~s~eea~~Ri~~Q~~~e----ek~~~A--D~VI~N~gs~e~L~~qv~~ll~ 193 (232)
T PLN02422 148 ----------------------------GLSEEQARNRINAQMPLD----WKRSKA--DIVIDNSGSLEDLKQQFQKVLE 193 (232)
T ss_pred ----------------------------CCCHHHHHHHHHHcCChh----HHHhhC--CEEEECCCCHHHHHHHHHHHHH
Confidence 234566666664332221 111112 357888888 999999998887
Q ss_pred hcC
Q psy6801 214 IRI 216 (228)
Q Consensus 214 ~~~ 216 (228)
..+
T Consensus 194 ~l~ 196 (232)
T PLN02422 194 KIR 196 (232)
T ss_pred HHh
Confidence 765
No 57
>PRK07933 thymidylate kinase; Validated
Probab=99.57 E-value=5.6e-14 Score=110.64 Aligned_cols=174 Identities=13% Similarity=0.073 Sum_probs=92.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcc---eeehhHHHHHHHhccChhhHHHHHHHHCCC--CC--ChH--H--------
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVK---HIATGDILRSHIAQNTTLGLKAKEYMNKGL--LV--PDD--L-------- 70 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~--~-------- 70 (228)
+.|+|+|+.||||||+++.|++.+... ++-+ +.-....++.++.++..+.... .. +.. .
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 369999999999999999999998432 2211 0000012334444444443210 00 000 0
Q ss_pred HHHHHHHHHhccCCceEEcCCCCCH-----------------HHHHHHHhc--C-CCCCEEEEEEeCHHHHHHHHhcCcc
Q psy6801 71 MIDLVKNEVKDLKCNYLLDGFPRTY-----------------DQAMALFKN--H-LSPNCVMHINVPKEVIIDRLSKRWI 130 (228)
Q Consensus 71 ~~~~~~~~l~~~~~~~ildg~p~~~-----------------~~~~~l~~~--~-~~~~~vi~l~~~~e~~~~R~~~R~~ 130 (228)
....+...+.. +..+|.|.|..+- .+...+... + ..||++|||++|+++..+|+.+|..
T Consensus 77 ~~~~I~p~l~~-g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~ 155 (213)
T PRK07933 77 ARDELAGLLAA-HDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAA 155 (213)
T ss_pred hHHHHHHHHhC-CCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhcc
Confidence 00123333333 6667888754331 111222221 1 3699999999999999999999832
Q ss_pred CCCCCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHH
Q psy6801 131 HPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIY 209 (228)
Q Consensus 131 ~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~ 209 (228)
. ..+.. ..+-....+.+++-...|... ...+ ....++.||++.+ ++|.++|.
T Consensus 156 ~-~~~~~---------------------~d~~E~~~~f~~~v~~~Y~~~----~~~~-~~~~~~~ida~~~~e~v~~~i~ 208 (213)
T PRK07933 156 Q-DADRA---------------------RDAYERDDGLQQRTGAVYAEL----AAQG-WGGPWLVVDPDVDPAALAARLA 208 (213)
T ss_pred c-cCCcc---------------------cccccccHHHHHHHHHHHHHH----HHhc-CCCCeEEeCCCCCHHHHHHHHH
Confidence 1 00000 000011122222223333332 2221 1235788999999 99999998
Q ss_pred HHHh
Q psy6801 210 EHLN 213 (228)
Q Consensus 210 ~~l~ 213 (228)
+.|.
T Consensus 209 ~~~~ 212 (213)
T PRK07933 209 AALL 212 (213)
T ss_pred HHhc
Confidence 8763
No 58
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.57 E-value=1.9e-13 Score=104.11 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=68.0
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCC
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKC 84 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (228)
..++.|+|+|+|||||||+|+.|++.+++++++.|+++...... +...... ..|...........+...... ..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~~---~~g~~~~~~~~~~~~~~l~~~-~~ 75 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--SIPEIFE---EEGEAAFRELEEEVLAELLAR-HN 75 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--CHHHHHH---HHCHHHHHHHHHHHHHHHHhc-CC
Confidence 34568999999999999999999999999999998887654321 2211111 112111111122222222221 22
Q ss_pred ceEEcC--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 85 NYLLDG--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 85 ~~ildg--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.+|..| +.........+.. ...+|||.+|.+.+.+|+..|
T Consensus 76 ~vi~~g~~~~~~~~~r~~l~~----~~~~v~l~~~~~~~~~R~~~~ 117 (175)
T PRK00131 76 LVISTGGGAVLREENRALLRE----RGTVVYLDASFEELLRRLRRD 117 (175)
T ss_pred CEEEeCCCEeecHHHHHHHHh----CCEEEEEECCHHHHHHHhcCC
Confidence 333333 2222222333322 347899999999999999887
No 59
>PRK06762 hypothetical protein; Provisional
Probab=99.56 E-value=1.5e-13 Score=104.19 Aligned_cols=111 Identities=18% Similarity=0.230 Sum_probs=70.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh--CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccC
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF--NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLK 83 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (228)
+|..|+|+|+|||||||+|+.|++.+ ++.+++.|. ++..+..... ..+ ....+.+...+...+.. +
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~-~r~~l~~~~~---------~~~-~~~~~~~~~~~~~~~~~-g 68 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV-VRRDMLRVKD---------GPG-NLSIDLIEQLVRYGLGH-C 68 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH-HHHHhccccC---------CCC-CcCHHHHHHHHHHHHhC-C
Confidence 35689999999999999999999998 566778754 4443321100 001 11122233333333433 6
Q ss_pred CceEEcCCCCC---HHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 84 CNYLLDGFPRT---YDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 84 ~~~ildg~p~~---~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
..+|+|+.... ......+......+..+|||++|.+++.+|...|
T Consensus 69 ~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R 116 (166)
T PRK06762 69 EFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTR 116 (166)
T ss_pred CEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcc
Confidence 77889984322 2223444444344678999999999999999998
No 60
>KOG3347|consensus
Probab=99.56 E-value=1.4e-13 Score=99.39 Aligned_cols=107 Identities=19% Similarity=0.309 Sum_probs=78.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHC--CCCCChHHHHHHHHHHHhcc
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK--GLLVPDDLMIDLVKNEVKDL 82 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ 82 (228)
+..+.|+|+|-||+||||+|++||+.+++.+|+.++++++.-. ...+-.. -..+.++.+.+-+...+.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l--------~~gyDE~y~c~i~DEdkv~D~Le~~m~-- 74 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL--------YEGYDEEYKCHILDEDKVLDELEPLMI-- 74 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc--------hhcccccccCccccHHHHHHHHHHHHh--
Confidence 3456899999999999999999999999999999999887521 1111111 124556677777777776
Q ss_pred CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 83 KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 83 ~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
..|.|+|-+.-.+-. + -.+|+|+.|+||.+++.+|+.+|
T Consensus 75 ~Gg~IVDyHgCd~Fp-e------rwfdlVvVLr~~~s~LY~RL~sR 113 (176)
T KOG3347|consen 75 EGGNIVDYHGCDFFP-E------RWFDLVVVLRTPNSVLYDRLKSR 113 (176)
T ss_pred cCCcEEeecccCccc-h------hheeEEEEEecCchHHHHHHHHc
Confidence 578888843211100 0 23789999999999999999999
No 61
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.56 E-value=2.8e-13 Score=105.37 Aligned_cols=163 Identities=16% Similarity=0.128 Sum_probs=101.1
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCC----CCCh------------
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL----LVPD------------ 68 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------------ 68 (228)
..|.+|.|+|.+||||||+++.|++.+|++++++|.+.++.+.+ .+....+...+.... .+..
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~ 82 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKE 82 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHH
Confidence 45678999999999999999999999999999999998887764 333333333222110 1111
Q ss_pred ------HHHHHHHHHHHhcc-----CCceEEcCCCCCHHHHHHHHhcC----CCCCEEEEEEeCHHHHHHHHhcCccCCC
Q psy6801 69 ------DLMIDLVKNEVKDL-----KCNYLLDGFPRTYDQAMALFKNH----LSPNCVMHINVPKEVIIDRLSKRWIHPA 133 (228)
Q Consensus 69 ------~~~~~~~~~~l~~~-----~~~~ildg~p~~~~~~~~l~~~~----~~~~~vi~l~~~~e~~~~R~~~R~~~~~ 133 (228)
.+++..+...+.+. ...+++|. | .|.+.+ ..+|.+|++.||.++..+|+..|.
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei-p-------LL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd---- 150 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVDI-P-------LLGPYNFRHYDYLKKVIVIKADLETRIRRLMERD---- 150 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe-c-------hhhhccCchhhhCCEEEEEECCHHHHHHHHHHcC----
Confidence 11222222222221 22344554 1 111111 137899999999999999999982
Q ss_pred CCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCC-C-cchHHHHHHH
Q psy6801 134 SGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNT-T-DEIWPRIYEH 211 (228)
Q Consensus 134 ~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~-~-e~v~~~i~~~ 211 (228)
+.+.+.+.+++........ .-... -++|+++. + +++.++|...
T Consensus 151 -----------------------------~~s~~~a~~ri~~Q~~~ee----k~~~a--D~VI~N~g~~~~~l~~~~~~~ 195 (204)
T PRK14733 151 -----------------------------GKNRQQAVAFINLQISDKE----REKIA--DFVIDNTELTDQELESKLITT 195 (204)
T ss_pred -----------------------------CCCHHHHHHHHHhCCCHHH----HHHhC--CEEEECcCCCHHHHHHHHHHH
Confidence 2345666666655433221 11222 25678888 8 9999998887
Q ss_pred Hhhc
Q psy6801 212 LNIR 215 (228)
Q Consensus 212 l~~~ 215 (228)
++..
T Consensus 196 ~~~~ 199 (204)
T PRK14733 196 INEI 199 (204)
T ss_pred HHHH
Confidence 7654
No 62
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.56 E-value=1.1e-13 Score=108.79 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=103.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHC--------CC-CCChHHH-----
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK--------GL-LVPDDLM----- 71 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~----- 71 (228)
.+++|.|+|++||||||+++.|++ +|++++++|.+.+..+.++.+....+...+.. |. .+....+
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 356899999999999999999986 89999999988888766554433333333311 11 0211111
Q ss_pred -------------HHHH----HHHHhcc---CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccC
Q psy6801 72 -------------IDLV----KNEVKDL---KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIH 131 (228)
Q Consensus 72 -------------~~~~----~~~l~~~---~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~ 131 (228)
+..+ ...+... +..+++-+.|--+. . .+. ..+|.+|++.+|.+++.+|+.+|.
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e-~-~~~---~~~d~ii~V~a~~e~~~~Rl~~R~-- 155 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFE-S-GGD---AGLDFIVVVAADTELRLERAVQRG-- 155 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeee-c-Cch---hcCCeEEEEECCHHHHHHHHHHcC--
Confidence 1111 1222111 22344433221111 0 011 236899999999999999999991
Q ss_pred CCCCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHH
Q psy6801 132 PASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYE 210 (228)
Q Consensus 132 ~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~ 210 (228)
..+.+.+.+|+..+......+ +. . .++|+++.+ +++.++|.+
T Consensus 156 -------------------------------~~s~e~~~~Ri~~q~~~~~~~-~~---a--d~vI~N~g~~e~l~~~i~~ 198 (208)
T PRK14731 156 -------------------------------MGSREEIRRRIAAQWPQEKLI-ER---A--DYVIYNNGTLDELKAQTEQ 198 (208)
T ss_pred -------------------------------CCCHHHHHHHHHHcCChHHHH-Hh---C--CEEEECCCCHHHHHHHHHH
Confidence 235677888887765554433 21 2 356788888 999999998
Q ss_pred HHhhcC
Q psy6801 211 HLNIRI 216 (228)
Q Consensus 211 ~l~~~~ 216 (228)
.+...+
T Consensus 199 ~~~~~~ 204 (208)
T PRK14731 199 LYQVLL 204 (208)
T ss_pred HHHHHH
Confidence 876553
No 63
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.55 E-value=2.6e-13 Score=103.41 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=68.8
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCC
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKC 84 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (228)
+.+..|+|+|++||||||+++.|++.+++++++.|..+..... ........ ..|.......-..++.. +.. ..
T Consensus 2 ~~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~i~~~~~---~~g~~~fr~~e~~~l~~-l~~-~~ 74 (172)
T PRK05057 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADIGWVFD---VEGEEGFRDREEKVINE-LTE-KQ 74 (172)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cCHhHHHH---HhCHHHHHHHHHHHHHH-HHh-CC
Confidence 3456799999999999999999999999999999887655432 11211111 11211111111122222 222 34
Q ss_pred ceEEc-C--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 85 NYLLD-G--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 85 ~~ild-g--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.+|+. | .+........+... +.+|||++|.+++.+|+..+
T Consensus 75 ~~vi~~ggg~v~~~~~~~~l~~~----~~vv~L~~~~e~~~~Ri~~~ 117 (172)
T PRK05057 75 GIVLATGGGSVKSRETRNRLSAR----GVVVYLETTIEKQLARTQRD 117 (172)
T ss_pred CEEEEcCCchhCCHHHHHHHHhC----CEEEEEeCCHHHHHHHHhCC
Confidence 45553 2 23333333445433 58999999999999999866
No 64
>PRK13976 thymidylate kinase; Provisional
Probab=99.55 E-value=2e-13 Score=107.10 Aligned_cols=170 Identities=12% Similarity=0.047 Sum_probs=97.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcc-e-eehhHHHHHHHhccChhhHHHHHHHHCCCCCChH-H-----------HHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVK-H-IATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDD-L-----------MID 73 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~-~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~ 73 (228)
+.|+|+|.+||||||+++.|++.+... . ..+ +....+.++++++.++..+......... . +..
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v---~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~ 77 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNV---VLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVK 77 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcce---EEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999998532 1 111 0011223456777777766542112111 1 112
Q ss_pred HHHHHHhccCCceEEcCCCCC------------HHHHHHHHhc--CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccc
Q psy6801 74 LVKNEVKDLKCNYLLDGFPRT------------YDQAMALFKN--HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYN 139 (228)
Q Consensus 74 ~~~~~l~~~~~~~ildg~p~~------------~~~~~~l~~~--~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~ 139 (228)
.+...+.. +..+|.|.|..+ ..++..+... ...||++|||++|+++..+|+..+..
T Consensus 78 ~I~p~l~~-G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~--------- 147 (209)
T PRK13976 78 VILPALLQ-GKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGY--------- 147 (209)
T ss_pred HHHHHHHC-CCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccch---------
Confidence 23333333 666777875433 2233333322 24699999999999999999864410
Q ss_pred cCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCC------C-cchHHHHHHHH
Q psy6801 140 LDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNT------T-DEIWPRIYEHL 212 (228)
Q Consensus 140 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~------~-e~v~~~i~~~l 212 (228)
.....+.+++-...|.+. ...+ ....+.||+.. + ++|.++|.+.|
T Consensus 148 ----------------------e~~~~~~l~~v~~~Y~~l----~~~~--~~~~~~id~~~~~~~~~~~e~v~~~i~~~i 199 (209)
T PRK13976 148 ----------------------EFMDLEFYDKVRKGFREI----VIKN--PHRCHVITCIDAKDNIEDINSVHLEIVKLL 199 (209)
T ss_pred ----------------------hcccHHHHHHHHHHHHHH----HHhC--CCCeEEEECCCCccCcCCHHHHHHHHHHHH
Confidence 111233333333444333 2222 22366677732 3 78999999888
Q ss_pred hhcCCC
Q psy6801 213 NIRIPP 218 (228)
Q Consensus 213 ~~~~~~ 218 (228)
...++.
T Consensus 200 ~~~~~~ 205 (209)
T PRK13976 200 HAVTKD 205 (209)
T ss_pred HHHHHH
Confidence 877743
No 65
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.55 E-value=2.2e-13 Score=107.87 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=25.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCccee
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHI 36 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i 36 (228)
+|+|+|..||||||+++.|++.++..++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 4899999999999999999999987555
No 66
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.54 E-value=3.2e-13 Score=104.84 Aligned_cols=175 Identities=13% Similarity=0.160 Sum_probs=102.7
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhh-HHHHHHHHCCCCCCh----HH---------
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLG-LKAKEYMNKGLLVPD----DL--------- 70 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~--------- 70 (228)
|.+++|+|.|+|||||||+|+.|++++++.++..+|++|+.+....+.+ ......+..|+..++ ..
T Consensus 1 ~~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~ 80 (197)
T PRK12339 1 MESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQAR 80 (197)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999876544433 112221211111111 11
Q ss_pred -----HHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEe-CHHHHHHHHhcCccCCCCCcccccCCCC
Q psy6801 71 -----MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINV-PKEVIIDRLSKRWIHPASGRVYNLDFNA 144 (228)
Q Consensus 71 -----~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~-~~e~~~~R~~~R~~~~~~g~~~~~~~~~ 144 (228)
+..++...+.+ +..+|+|+.............. -..++++.+ +++.+++|+..|... .+
T Consensus 81 ~v~~~L~~va~~~l~~-G~sVIvEgv~l~p~~~~~~~~~---~v~~i~l~v~d~e~lr~Rl~~R~~~--~~--------- 145 (197)
T PRK12339 81 AIMPGINRVIRRALLN-GEDLVIESLYFHPPMIDENRTN---NIRAFYLYIRDAELHRSRLADRINY--TH--------- 145 (197)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEEecCcCHHHHHHHHhc---CeEEEEEEeCCHHHHHHHHHHHhhc--cc---------
Confidence 11223333333 8899999854444444333222 124566665 578888999999321 11
Q ss_pred CCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCCcchHHHHHHHH
Q psy6801 145 PKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTTDEIWPRIYEHL 212 (228)
Q Consensus 145 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~e~v~~~i~~~l 212 (228)
.+...+...+.+..++..-+.+.+..++.+. -+|++..-++.++.+.+.+
T Consensus 146 -----------------~~~p~~~~~~~~~~ir~i~~~l~~~a~~~~i-~~i~~~~~~~~~~~~~~~~ 195 (197)
T PRK12339 146 -----------------KNSPGKRLAEHLPEYRTIMDYSIADARGYNI-KVIDTDNYREARNPLLDPI 195 (197)
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHcCC-CeecCccHHHHHHHHHHHh
Confidence 1222334555555555555556665555443 4555553266666655543
No 67
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.54 E-value=5.8e-13 Score=100.63 Aligned_cols=153 Identities=15% Similarity=0.175 Sum_probs=86.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCC----hHH---HHHHHHHHHhcc
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP----DDL---MIDLVKNEVKDL 82 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~l~~~ 82 (228)
|+|.|++||||||+++.|++.++..+++.|++....... ....+.... ... ....+...+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 69 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIE----------KMSAGIPLNDDDRWPWLQNLNDASTAAAAK- 69 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHH----------HHHcCCCCChhhHHHHHHHHHHHHHHHHhc-
Confidence 578999999999999999999999999998863211000 000011000 011 11222222222
Q ss_pred CCceEEcCCCCCHHHHHHHHhcCCCCCE-EEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccC
Q psy6801 83 KCNYLLDGFPRTYDQAMALFKNHLSPNC-VMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQR 161 (228)
Q Consensus 83 ~~~~ildg~p~~~~~~~~l~~~~~~~~~-vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~ 161 (228)
+...|++.-.........+... .+++ +|||++|.+++.+|+..|..
T Consensus 70 ~~~~Vi~~t~~~~~~r~~~~~~--~~~~~~i~l~~~~e~~~~R~~~R~~------------------------------- 116 (163)
T TIGR01313 70 NKVGIITCSALKRHYRDILREA--EPNLHFIYLSGDKDVILERMKARKG------------------------------- 116 (163)
T ss_pred CCCEEEEecccHHHHHHHHHhc--CCCEEEEEEeCCHHHHHHHHHhccC-------------------------------
Confidence 4444665422223333334333 3444 79999999999999999920
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 162 DDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
.....+.+...+..+. ........++.||++.+ +++.+++.+.|.
T Consensus 117 ~~~~~~~i~~~~~~~~-------~~~~~e~~~~~id~~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 117 HFMKADMLESQFAALE-------EPLADETDVLRVDIDQPLEGVEEDCIAVVL 162 (163)
T ss_pred CCCCHHHHHHHHHHhC-------CCCCCCCceEEEECCCCHHHHHHHHHHHHh
Confidence 0011222333332221 10011124789999999 999999888763
No 68
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.53 E-value=2.4e-13 Score=105.13 Aligned_cols=155 Identities=18% Similarity=0.259 Sum_probs=96.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHC------CCCCChH-------------
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK------GLLVPDD------------- 69 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~------------- 69 (228)
+|+|+|.+||||||+++.|++..+++++++|++.++.+..+.+....+.+.+.. |. +...
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~-idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGE-LDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCC-CCHHHHHHHHhCCHHHH
Confidence 489999999999999999999888999999999999888777665555544431 21 1111
Q ss_pred ---------HHHHHHHHHHhcc-CC--ceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcc
Q psy6801 70 ---------LMIDLVKNEVKDL-KC--NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRV 137 (228)
Q Consensus 70 ---------~~~~~~~~~l~~~-~~--~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~ 137 (228)
.+...+...+... .. .+|++. |..... .+. -.+|.++++++|.+++.+|+..|.
T Consensus 80 ~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~-pll~e~--~~~---~~~D~vv~V~~~~~~~~~Rl~~R~-------- 145 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDV-PLLFEN--KLR---SLCDRVIVVDVSPQLQLERLMQRD-------- 145 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc-hHhhhC--CcH---HhCCEEEEEECCHHHHHHHHHHcC--------
Confidence 1112222222221 22 344444 221110 111 237899999999999999999992
Q ss_pred cccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHH
Q psy6801 138 YNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIY 209 (228)
Q Consensus 138 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~ 209 (228)
+.+.+.+.+++..+... .+.-... -++|+++.+ +++.+++.
T Consensus 146 -------------------------~~s~~~~~~r~~~q~~~----~~~~~~a--d~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 146 -------------------------NLTEEEVQKRLASQMDI----EERLARA--DDVIDNSATLADLVKQLE 187 (188)
T ss_pred -------------------------CCCHHHHHHHHHhcCCH----HHHHHhC--CEEEECCCCHHHHHHHHh
Confidence 23456666676665322 1111112 346777778 88887764
No 69
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.52 E-value=4e-13 Score=107.27 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=101.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCC-----CCChHH------------
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL-----LVPDDL------------ 70 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------ 70 (228)
++|.|+|.+||||||+++.|.+.+|+++|++|.+.++.+.++.+....+.+.+.... .+....
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 589999999999999999999989999999999999988877766566655542211 111111
Q ss_pred ------HHHHH----HHHHhc------------cCC-ceEEcCCCCCHHHHHHHHhcC---CCCCEEEEEEeCHHHHHHH
Q psy6801 71 ------MIDLV----KNEVKD------------LKC-NYLLDGFPRTYDQAMALFKNH---LSPNCVMHINVPKEVIIDR 124 (228)
Q Consensus 71 ------~~~~~----~~~l~~------------~~~-~~ildg~p~~~~~~~~l~~~~---~~~~~vi~l~~~~e~~~~R 124 (228)
++..+ ...+.+ .+. .+|+|. | .|.+.+ ..+|.+|++.+|.++..+|
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-P-------LL~E~~~~~~~~D~iv~V~a~~e~ri~R 153 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-P-------TLFETKTFTYFVSASVVVSCSEERQIER 153 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-c-------hhhccCchhhcCCeEEEEECCHHHHHHH
Confidence 11111 111210 012 455554 1 122221 1368999999999999999
Q ss_pred HhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCC--CC-
Q psy6801 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGN--TT- 201 (228)
Q Consensus 125 ~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~--~~- 201 (228)
+..|. +.+.+.+.+|+..... ..+. ..... ++|+++ .+
T Consensus 154 L~~R~---------------------------------g~s~eea~~Ri~~Q~~----~~ek-~~~aD-~VI~N~~~g~~ 194 (244)
T PTZ00451 154 LRKRN---------------------------------GFSKEEALQRIGSQMP----LEEK-RRLAD-YIIENDSADDL 194 (244)
T ss_pred HHHcC---------------------------------CCCHHHHHHHHHhCCC----HHHH-HHhCC-EEEECCCCCCH
Confidence 99981 2355677777755221 1111 12122 356666 77
Q ss_pred cchHHHHHHHHhh
Q psy6801 202 DEIWPRIYEHLNI 214 (228)
Q Consensus 202 e~v~~~i~~~l~~ 214 (228)
+++.++|.+.+..
T Consensus 195 ~~L~~~v~~~~~~ 207 (244)
T PTZ00451 195 DELRGSVCDCVAW 207 (244)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 70
>PLN02199 shikimate kinase
Probab=99.51 E-value=2.4e-12 Score=104.37 Aligned_cols=109 Identities=14% Similarity=0.186 Sum_probs=70.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHH-CCCCCChHHHHHHHHHHHhccCCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMN-KGLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
...|+++|++||||||+++.|++.+|++++++|.++.+... +..+ .+.+. .|.....+....++.+... ..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~sI----~eIf~~~GE~~FR~~E~e~L~~L~~--~~~ 174 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTSV----AEIFVHHGENFFRGKETDALKKLSS--RYQ 174 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCCH----HHHHHHhCHHHHHHHHHHHHHHHHh--cCC
Confidence 45799999999999999999999999999999998887533 2222 23332 2422222222333333211 345
Q ss_pred eEEc-C--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhc
Q psy6801 86 YLLD-G--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127 (228)
Q Consensus 86 ~ild-g--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~ 127 (228)
+||. | .+........+. . ..+|||++|.+++.+|+..
T Consensus 175 ~VIStGGG~V~~~~n~~~L~-~----G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 175 VVVSTGGGAVIRPINWKYMH-K----GISIWLDVPLEALAHRIAA 214 (303)
T ss_pred EEEECCCcccCCHHHHHHHh-C----CeEEEEECCHHHHHHHHhh
Confidence 5553 3 333333333332 1 4799999999999999985
No 71
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.51 E-value=4.7e-13 Score=102.72 Aligned_cols=113 Identities=20% Similarity=0.291 Sum_probs=76.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCC-----CCCh---------------
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL-----LVPD--------------- 68 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------------- 68 (228)
+|+|+|++||||||+++.|++ +|++++++|++.++.+..+.+....+...+.... .+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999998 9999999999999988877777777777664321 1111
Q ss_pred ---HHHHHHHHHHHhcc-----C-CceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 69 ---DLMIDLVKNEVKDL-----K-CNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 69 ---~~~~~~~~~~l~~~-----~-~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.+++..+...+.+. . ..+|+|. |-.... .+. -.+|.+|++++|+++..+|+..|
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~-plL~e~--~~~---~~~D~vv~V~a~~~~ri~Rl~~R 142 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDI-PLLFET--GLE---KLVDRVIVVDAPPEIQIERLMKR 142 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEEe-hHhhcC--CcH---HhCCeEEEEECCHHHHHHHHHHc
Confidence 22222233333221 2 2344454 211110 011 23789999999999999999998
No 72
>KOG3327|consensus
Probab=99.50 E-value=3.7e-13 Score=100.56 Aligned_cols=173 Identities=15% Similarity=0.234 Sum_probs=113.8
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHH-----------H
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMI-----------D 73 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 73 (228)
.....|++.|..+|||||++..|.+.+. +..+. ..+.......+..|+.+..|+.+....++..++ .
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~-~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDP-AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHH-hccCh-HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 3457899999999999999999999883 22222 222333445678999999999998888876654 3
Q ss_pred HHHHHHhccCCceEEcCCCCC---HHHHHH--------HHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCC
Q psy6801 74 LVKNEVKDLKCNYLLDGFPRT---YDQAMA--------LFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDF 142 (228)
Q Consensus 74 ~~~~~l~~~~~~~ildg~p~~---~~~~~~--------l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~ 142 (228)
.+.+.+.+ +..+|+|.|..+ +..++. -+..-.+||+++||+++++.+.+| ..+ |
T Consensus 81 ~i~e~l~k-g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~r-ggf------G------- 145 (208)
T KOG3327|consen 81 LIKEKLAK-GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARR-GGF------G------- 145 (208)
T ss_pred HHHHHHhc-CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHh-cCc------c-------
Confidence 45555555 777999986543 111221 111124699999999999996655 222 1
Q ss_pred CCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCC
Q psy6801 143 NAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIP 217 (228)
Q Consensus 143 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~ 217 (228)
.+......++++...+++.... .+.....++|++.+ ++|++.|.+.++..+.
T Consensus 146 ------------------~Erye~v~fqekv~~~~q~l~r-----~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~ 198 (208)
T KOG3327|consen 146 ------------------EERYETVAFQEKVLVFFQKLLR-----KEDLNWHVVDASKSVEKVHQQVRSLVENVLS 198 (208)
T ss_pred ------------------hhHHHHHHHHHHHHHHHHHHHh-----ccCCCeEEEecCccHHHHHHHHHHHHHHhcc
Confidence 1112234455555544433321 12235789999999 9999999988877663
No 73
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.50 E-value=8.4e-14 Score=102.75 Aligned_cols=113 Identities=19% Similarity=0.365 Sum_probs=70.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChh---hHHHHHHHHCCCCCChHHHHHHHHHHHhccCCc
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTL---GLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
+|+++|+|||||||+++.|++.++..+++.|++.........+. ........ ...+...+...+.. +..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~-g~~ 72 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALRN-GNS 72 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHHT-T-E
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHHc-CCC
Confidence 48999999999999999999999999999977665443211110 00000000 11233444444555 778
Q ss_pred eEEcCCCCCHHH---HHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCc
Q psy6801 86 YLLDGFPRTYDQ---AMALFKNHLSPNCVMHINVPKEVIIDRLSKRW 129 (228)
Q Consensus 86 ~ildg~p~~~~~---~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 129 (228)
+|+|+....... ...+......+..+|+|+++.+++.+|+..|.
T Consensus 73 ~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (143)
T PF13671_consen 73 VVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRN 119 (143)
T ss_dssp EEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTH
T ss_pred ceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcC
Confidence 999864333333 33333321234579999999999999999994
No 74
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.50 E-value=4e-13 Score=104.38 Aligned_cols=163 Identities=12% Similarity=0.123 Sum_probs=101.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCC-----CCCh---------------
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL-----LVPD--------------- 68 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------------- 68 (228)
.|+|+|++||||||+++.|++ +|..+++.|++.+..+.++.+..+.+.+.+.... .+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 378999999999999999965 7999999999999988877766666665543221 1111
Q ss_pred ---HHHHHHHHHHHhcc------CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccc
Q psy6801 69 ---DLMIDLVKNEVKDL------KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYN 139 (228)
Q Consensus 69 ---~~~~~~~~~~l~~~------~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~ 139 (228)
.+++..+...+.+. +..+|+|. |--.. . .+. ..+|.+|++.+|+++..+|+.+|.
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~-pLL~E-~-~~~---~~~D~vi~V~a~~e~r~~RL~~R~---------- 143 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEV-PLLFE-T-DAY---TLCDATVTVDSDPEESILRTISRD---------- 143 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe-eeeeE-c-Cch---hhCCEEEEEECCHHHHHHHHHHcC----------
Confidence 11222222222111 22344443 21111 0 011 126899999999999999999991
Q ss_pred cCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCC
Q psy6801 140 LDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIP 217 (228)
Q Consensus 140 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~ 217 (228)
+.+.+.+..++.... +..+.-... -++|+++.+ +++..++.+.+...++
T Consensus 144 -----------------------g~s~e~a~~ri~~Q~----~~~~k~~~a--D~vI~N~~~~~~l~~~v~~l~~~~~~ 193 (196)
T PRK14732 144 -----------------------GMKKEDVLARIASQL----PITEKLKRA--DYIVRNDGNREGLKEECKILYSTLLK 193 (196)
T ss_pred -----------------------CCCHHHHHHHHHHcC----CHHHHHHhC--CEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 234566777765522 222222222 246777878 9999999988776554
No 75
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.50 E-value=7.4e-13 Score=106.90 Aligned_cols=161 Identities=22% Similarity=0.303 Sum_probs=92.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccC
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLK 83 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (228)
.|+|+|+|||||||+|+.|++.++ +.+++. |.++..+..... .....+ .......+...+.. +
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~---~~e~~~-------~~~~~~~i~~~l~~-~ 68 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKE---KYEEFI-------RDSTLYLIKTALKN-K 68 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhH---HhHHHH-------HHHHHHHHHHHHhC-C
Confidence 489999999999999999999873 345555 555554321111 001111 11223344444544 6
Q ss_pred CceEEcCCCCCH---HHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccccc
Q psy6801 84 CNYLLDGFPRTY---DQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQ 160 (228)
Q Consensus 84 ~~~ildg~p~~~---~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~ 160 (228)
..+|+|+..... .+...+......+..+|||++|.+++.+|...|.
T Consensus 69 ~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~------------------------------- 117 (249)
T TIGR03574 69 YSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG------------------------------- 117 (249)
T ss_pred CeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCC-------------------------------
Confidence 668889854332 2232333332346679999999999999988871
Q ss_pred CCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCC--C-cchHHHHHHHHhhcCC
Q psy6801 161 RDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNT--T-DEIWPRIYEHLNIRIP 217 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~--~-e~v~~~i~~~l~~~~~ 217 (228)
.....+.+...+.+|..-. ..|.+....++||++. + +++++.|...+...++
T Consensus 118 -~~~~~~~i~~l~~r~e~p~----~~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~~~~ 172 (249)
T TIGR03574 118 -EKIPNEVIKDMYEKFDEPG----TKYSWDLPDLTIDTTKKIDYNEILEEILEISENKLK 172 (249)
T ss_pred -CCCCHHHHHHHHHhhCCCC----CCCCccCceEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 0112333333334442111 1122122467888876 5 7999999888765443
No 76
>PRK07261 topology modulation protein; Provisional
Probab=99.49 E-value=1.3e-13 Score=105.09 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=73.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCceE
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNYL 87 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 87 (228)
++|+|+|+|||||||+|+.|++.++.++++.|.+.... .....+.+.....+...+. ...||
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~----------------~~~~~~~~~~~~~~~~~~~--~~~wI 62 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP----------------NWQERDDDDMIADISNFLL--KHDWI 62 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc----------------ccccCCHHHHHHHHHHHHh--CCCEE
Confidence 47999999999999999999999999999997763211 0112233444555555554 45599
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCcc
Q psy6801 88 LDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWI 130 (228)
Q Consensus 88 ldg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 130 (228)
+||..........+.. .|.+|+|++|...|..|+.+|..
T Consensus 63 idg~~~~~~~~~~l~~----ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 63 IDGNYSWCLYEERMQE----ADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred EcCcchhhhHHHHHHH----CCEEEEEcCCHHHHHHHHHHHHH
Confidence 9996554333344443 58999999999999999999854
No 77
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.48 E-value=5.2e-13 Score=114.23 Aligned_cols=166 Identities=14% Similarity=0.163 Sum_probs=100.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCC-----CCCh--------------
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL-----LVPD-------------- 68 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------------- 68 (228)
++|.|+|++||||||+++.|++ +|+++|++|.+.++.+.++.+.-..+.+.+..+. .+..
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999987 8999999999999988776654444444443221 1111
Q ss_pred ----HHHHHHHHHHHh----cc-CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccc
Q psy6801 69 ----DLMIDLVKNEVK----DL-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYN 139 (228)
Q Consensus 69 ----~~~~~~~~~~l~----~~-~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~ 139 (228)
.++...+..++. .. +..+|+.+.|.-... .+. ..+|.+||+++|.++..+|+..|.
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~~~---~~~D~iI~V~ap~e~ri~Rl~~rR---------- 145 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--GMA---PLFHLVVVVDADVEVRVRRLVEQR---------- 145 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--Cch---hhCCEEEEEECCHHHHHHHHHhcC----------
Confidence 112222222222 21 345666554322110 111 236899999999999999998861
Q ss_pred cCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCCC
Q psy6801 140 LDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIPP 218 (228)
Q Consensus 140 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~~ 218 (228)
. .+.+....++...... .. ..... -++|+++.+ +++..++.+.+...+.+
T Consensus 146 ----------------------g-~s~~~a~~ri~~Q~~~-e~----k~~~A-D~vIdN~~s~e~l~~~v~~~l~~~~~~ 196 (395)
T PRK03333 146 ----------------------G-MAEADARARIAAQASD-EQ----RRAVA-DVWLDNSGTPDELVEAVRALWADRLLP 196 (395)
T ss_pred ----------------------C-CCHHHHHHHHHhcCCh-HH----HHHhC-CEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence 1 1223333333222111 11 11111 246778878 99999999888877654
No 78
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=9.8e-13 Score=95.02 Aligned_cols=151 Identities=17% Similarity=0.243 Sum_probs=97.9
Q ss_pred EcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChH---HHHHHHHHHHhcc---CCce
Q psy6801 13 IGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDD---LMIDLVKNEVKDL---KCNY 86 (228)
Q Consensus 13 ~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~---~~~~ 86 (228)
+|.+||||||++..|++++++.+|+-|++.... -.+.+..|.++.|+ -|...+..++... ++..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~a----------Ni~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPA----------NIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV 70 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHH----------HHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence 599999999999999999999999998875322 23345667666554 3555666655443 4444
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCE-EEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCc
Q psy6801 87 LLDGFPRTYDQAMALFKNHLSPNC-VMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDK 165 (228)
Q Consensus 87 ildg~p~~~~~~~~l~~~~~~~~~-vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 165 (228)
|+.+-.-.......|.. ..|++ +|||+.+.+++.+|+..|.- +|.|+
T Consensus 71 vi~CSALKr~YRD~LR~--~~~~~~Fv~L~g~~~~i~~Rm~~R~g----------HFM~~-------------------- 118 (161)
T COG3265 71 VIACSALKRSYRDLLRE--ANPGLRFVYLDGDFDLILERMKARKG----------HFMPA-------------------- 118 (161)
T ss_pred EEecHHHHHHHHHHHhc--cCCCeEEEEecCCHHHHHHHHHhccc----------CCCCH--------------------
Confidence 54432212222233333 33444 89999999999999999942 13333
Q ss_pred HHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 166 PEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 166 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
.....+...++.--.++ .+++||.+.+ +++.+++...|..
T Consensus 119 --------~ll~SQfa~LE~P~~de-~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 119 --------SLLDSQFATLEEPGADE-DVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred --------HHHHHHHHHhcCCCCCC-CEEEeeCCCCHHHHHHHHHHHHhc
Confidence 11122223333332233 5899999999 9999999888764
No 79
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.46 E-value=8.6e-13 Score=109.63 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=68.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHH-CCCCCChHHHHHHHHHHHhccCC
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMN-KGLLVPDDLMIDLVKNEVKDLKC 84 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 84 (228)
....|+|+|++||||||+++.|++.+|++++++|..+.+... ... .+.+. .|...........+...+.. ..
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G--~~i----~ei~~~~G~~~fr~~e~~~l~~ll~~-~~ 204 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG--LSV----SEIFALYGQEGYRRLERRALERLIAE-HE 204 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC--CCH----HHHHHHHCHHHHHHHHHHHHHHHHhh-CC
Confidence 346899999999999999999999999999999877665422 112 22221 12111112222333333322 33
Q ss_pred ceEEc-C--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 85 NYLLD-G--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 85 ~~ild-g--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.+|+. | .+........+.. ..++|||.+|++++.+|+..|
T Consensus 205 ~~VI~~Ggg~v~~~~~~~~l~~----~~~~V~L~a~~e~~~~Rl~~r 247 (309)
T PRK08154 205 EMVLATGGGIVSEPATFDLLLS----HCYTVWLKASPEEHMARVRAQ 247 (309)
T ss_pred CEEEECCCchhCCHHHHHHHHh----CCEEEEEECCHHHHHHHHhcC
Confidence 34553 3 2222222222222 346999999999999999987
No 80
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.46 E-value=1.7e-12 Score=99.53 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=27.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCccee
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHI 36 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i 36 (228)
.+.|+|.|+.|+||||+|+.||++++..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 468999999999999999999999997554
No 81
>KOG3354|consensus
Probab=99.45 E-value=2.8e-12 Score=93.27 Aligned_cols=111 Identities=23% Similarity=0.316 Sum_probs=73.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHH---HHHHHHHHHhcc---
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL---MIDLVKNEVKDL--- 82 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~--- 82 (228)
.|+++|++||||||+++.|++++++.+++.||+.... -.+.+..|.++.|+- |...+...+...
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~----------NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~ 83 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPA----------NVEKMTQGIPLNDDDRWPWLKKIAVELRKALAS 83 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHH----------HHHHHhcCCCCCcccccHHHHHHHHHHHHHhhc
Confidence 7999999999999999999999999999999985332 234455566555531 333333322221
Q ss_pred CCceEEcCCCCCHHHHHHHHhc------CCCC--C-EEEEEEeCHHHHHHHHhcCc
Q psy6801 83 KCNYLLDGFPRTYDQAMALFKN------HLSP--N-CVMHINVPKEVIIDRLSKRW 129 (228)
Q Consensus 83 ~~~~ildg~p~~~~~~~~l~~~------~~~~--~-~vi~l~~~~e~~~~R~~~R~ 129 (228)
++++|+-+-.--......+... +--| . .+|+|.++.+++.+|+.+|.
T Consensus 84 ~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~ 139 (191)
T KOG3354|consen 84 GQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK 139 (191)
T ss_pred CCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcc
Confidence 7888886532222222222221 0112 1 48999999999999999994
No 82
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.45 E-value=7.8e-13 Score=101.18 Aligned_cols=114 Identities=19% Similarity=0.297 Sum_probs=74.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCC-----CCCh--------------
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL-----LVPD-------------- 68 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------------- 68 (228)
++|.|+|..||||||+++.|++ +|+++|++|.+.++.+.++.+..+.+.+.+.... .+..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4799999999999999999988 9999999999999988888877777776665321 1111
Q ss_pred ----HHHHHHHHHHHhc----c-C-CceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 69 ----DLMIDLVKNEVKD----L-K-CNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 69 ----~~~~~~~~~~l~~----~-~-~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.+++..+...+.+ . . ..+++|. |--.. . .+.. .+|.+|++.||.++..+|+..|
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~-pLL~E-~-~~~~---~~D~vi~V~a~~e~ri~Rl~~R 143 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEI-PLLFE-S-GLEK---LCDEVIVVYAPEEIRIKRLMER 143 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTT-T-TGGG---GSSEEEEEE--HHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEc-chhhh-h-hHhh---hhceEEEEECCHHHHHHHHHhh
Confidence 1222222222222 2 3 4455564 11111 0 1222 2799999999999999999998
No 83
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.44 E-value=5e-12 Score=94.40 Aligned_cols=106 Identities=16% Similarity=0.252 Sum_probs=66.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHH---HHHhccCCce
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVK---NEVKDLKCNY 86 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~ 86 (228)
|+|+|+|||||||+++.|++.+++++++.|+++...... ......... | ...+..... ..+.. ...+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~~---~----~~~~~~~e~~~~~~~~~-~~~~ 71 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAEE---G----EEGFRELEREVLLLLLT-KENA 71 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHHH---C----HHHHHHHHHHHHHHHhc-cCCc
Confidence 899999999999999999999999999998887665432 121211111 1 122222211 12222 3455
Q ss_pred EEcC---CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCc
Q psy6801 87 LLDG---FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRW 129 (228)
Q Consensus 87 ildg---~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 129 (228)
|+++ +.........+. ....+|||++|++++.+|+..|.
T Consensus 72 vi~~g~~~i~~~~~~~~~~----~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 72 VIATGGGAVLREENRRLLL----ENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred EEECCCCccCcHHHHHHHH----cCCeEEEEeCCHHHHHHHhccCC
Confidence 6552 323332222222 24579999999999999999883
No 84
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.43 E-value=6.9e-12 Score=96.48 Aligned_cols=38 Identities=24% Similarity=0.462 Sum_probs=36.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~ 45 (228)
++|.|-||.||||||+|+.||++||+.+++++-++|..
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 68999999999999999999999999999999998874
No 85
>KOG3877|consensus
Probab=99.43 E-value=1.4e-11 Score=97.74 Aligned_cols=171 Identities=16% Similarity=0.254 Sum_probs=100.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCccee---ehhHHHHHHHhc-------------------------cChhhHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHI---ATGDILRSHIAQ-------------------------NTTLGLKAKE 58 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i---~~~d~~~~~~~~-------------------------~~~~~~~~~~ 58 (228)
.++|++.|+.|||||++|+.||+++|+.++ ++|+++-..... ..++...++.
T Consensus 71 SkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q~ 150 (393)
T KOG3877|consen 71 SKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQD 150 (393)
T ss_pred ceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHHH
Confidence 468999999999999999999999998665 454432211110 0111111111
Q ss_pred HHHCCCCCChHHHHHHHHHHHhccCCceEEcCCCCC-HHHHHHHHhcC---------------------CCCCEEEEEEe
Q psy6801 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFPRT-YDQAMALFKNH---------------------LSPNCVMHINV 116 (228)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ildg~p~~-~~~~~~l~~~~---------------------~~~~~vi~l~~ 116 (228)
.+-. .--..+...+...+.. ++|+|++.-|.+ +..++++...| +.|.+||||+.
T Consensus 151 r~y~---~R~~QY~dAL~HiL~T-GQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~ 226 (393)
T KOG3877|consen 151 RIYN---CRFDQYLDALAHILNT-GQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT 226 (393)
T ss_pred HHHH---hHHHHHHHHHHHHHhc-CCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence 1110 0012233444444444 999999986654 44455544442 35999999999
Q ss_pred CHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEE
Q psy6801 117 PKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTF 196 (228)
Q Consensus 117 ~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~i 196 (228)
|.+.+++++.+|... ++. .-.++..++.-=+.|.++ .+..|++...+...
T Consensus 227 Pv~~v~~~Ik~rg~~------~Ei---------------------k~~s~aYL~diE~~YK~~---fL~e~s~h~eiL~Y 276 (393)
T KOG3877|consen 227 PVNKVLENIKRRGNT------DEI---------------------KTVSEAYLKDIEESYKDS---FLREYSNHSEILAY 276 (393)
T ss_pred CcHHHHHHHHhcCCC------cce---------------------eehhHHHHHHHHHHHHHH---HHHHHhhhhheeee
Confidence 999999999999321 100 001122222222334333 24456666667788
Q ss_pred eCCCC---cchHHHHHHH
Q psy6801 197 TGNTT---DEIWPRIYEH 211 (228)
Q Consensus 197 d~~~~---e~v~~~i~~~ 211 (228)
|.+.+ +.|+++|...
T Consensus 277 dwt~~gdt~~VVEDIErl 294 (393)
T KOG3877|consen 277 DWTKPGDTDAVVEDIERL 294 (393)
T ss_pred ecccCCCchhHHHhhhhh
Confidence 88875 7899988763
No 86
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.43 E-value=9.2e-12 Score=110.67 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=72.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHH-CCCCCChHHHHHHHHHHHhccCCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMN-KGLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
-..|+++|+|||||||+++.||+.++++++|+|+.+.+.. |..+.+++. .|+.-..+.-..++.+.+. ..+
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~--~~~ 77 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLE--DFD 77 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCC
Confidence 4579999999999999999999999999999999887763 344445443 2432222333333333222 334
Q ss_pred eEE-cC--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 86 YLL-DG--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 86 ~il-dg--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.|+ .| .+........+....-.-..+|||++|++++.+|+..+
T Consensus 78 ~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 78 GIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRG 123 (542)
T ss_pred eEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCC
Confidence 455 32 34443333333211011237999999999999998765
No 87
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.42 E-value=9.4e-12 Score=96.11 Aligned_cols=160 Identities=12% Similarity=0.107 Sum_probs=89.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHH----H-hccChhhHHHHHHHHCCCCCChHHH--------HHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH----I-AQNTTLGLKAKEYMNKGLLVPDDLM--------IDL 74 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 74 (228)
..++|+||+||||||+++.|+..++..++..+..+... . ....-.++........+.. ...+. ...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~yg~~~~ 81 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLF-ALSWHANGLYYGVGIE 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCch-hhHHHHhCCccCCcHH
Confidence 46999999999999999999998876555443322111 0 0000111222222222211 00000 012
Q ss_pred HHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccc
Q psy6801 75 VKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDIT 154 (228)
Q Consensus 75 ~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~ 154 (228)
+...+.. +..+|++|.-. ....+......+-.+|||++|.+++.+|+..|.
T Consensus 82 ~~~~l~~-g~~VI~~G~~~---~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~------------------------- 132 (186)
T PRK10078 82 IDLWLHA-GFDVLVNGSRA---HLPQARARYQSALLPVCLQVSPEILRQRLENRG------------------------- 132 (186)
T ss_pred HHHHHhC-CCEEEEeChHH---HHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC-------------------------
Confidence 3444444 66788887521 112222221234568999999999999998871
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 155 GEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
...++.+.+++.++. .|.. ...++|+++.+ ++++++|...+..
T Consensus 133 --------~~~~~~i~~rl~r~~--------~~~~-ad~~vi~~~~s~ee~~~~i~~~l~~ 176 (186)
T PRK10078 133 --------RENASEINARLARAA--------RYQP-QDCHTLNNDGSLRQSVDTLLTLLHL 176 (186)
T ss_pred --------CCCHHHHHHHHHHhh--------hhcc-CCEEEEeCCCCHHHHHHHHHHHHhh
Confidence 123345666664431 1222 23567777778 9999999988753
No 88
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.41 E-value=1.1e-12 Score=101.16 Aligned_cols=163 Identities=20% Similarity=0.237 Sum_probs=98.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC--c--ceeehhHHHHHHHhccChhh----HHHHHHHHCCCCCChH--------H
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN--V--KHIATGDILRSHIAQNTTLG----LKAKEYMNKGLLVPDD--------L 70 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~--~--~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~ 70 (228)
+..|+|+||+||||+|+++.|.+.+. + .+..+....|.....+.++. +.+...+..|..++.. .
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 34699999999999999999999862 2 22222111111111111111 4455555555433321 1
Q ss_pred HHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEE-eCHHHHHHHHhcCccCCCCCcccccCCCCCCCCC
Q psy6801 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHIN-VPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPG 149 (228)
Q Consensus 71 ~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~-~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~ 149 (228)
....+...+.. ++.+|+|..|....++.... ..| .+||+. .+.+++.+|+..|
T Consensus 82 ~~~~i~~~~~~-~~~~ild~~~~~~~~l~~~~---~~~-~vIfi~~~s~~~l~~rl~~R--------------------- 135 (184)
T smart00072 82 SKETIRQVAEQ-GKHCLLDIDPQGVKQLRKAQ---LYP-IVIFIAPPSSEELERRLRGR--------------------- 135 (184)
T ss_pred CHHHHHHHHHc-CCeEEEEECHHHHHHHHHhC---CCc-EEEEEeCcCHHHHHHHHHhc---------------------
Confidence 22345555655 88999999887776665432 333 789998 5567799999988
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 150 IDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
.++..+.+.+|+....... ..+... -.+|.++ + ++.++++.+.|..
T Consensus 136 ------------~~~~~~~i~~rl~~a~~~~----~~~~~f--d~~I~n~-~l~~~~~~l~~~i~~ 182 (184)
T smart00072 136 ------------GTETAERIQKRLAAAQKEA----QEYHLF--DYVIVND-DLEDAYEELKEILEA 182 (184)
T ss_pred ------------CCCCHHHHHHHHHHHHHHH----hhhccC--CEEEECc-CHHHHHHHHHHHHHh
Confidence 2445677888887654332 223222 2455555 5 7888888888764
No 89
>KOG3220|consensus
Probab=99.41 E-value=1.9e-11 Score=92.67 Aligned_cols=163 Identities=17% Similarity=0.217 Sum_probs=105.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCCh-----H------------
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD-----D------------ 69 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------------ 69 (228)
|.+|.++|..||||||+++.+. .+|+++|++|.+.|+.+.++.+-...+.+.+......++ +
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 4579999999999999999996 899999999999999999988887777776654321111 0
Q ss_pred --H--------HHHHHHHHHhcc---CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCc
Q psy6801 70 --L--------MIDLVKNEVKDL---KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGR 136 (228)
Q Consensus 70 --~--------~~~~~~~~l~~~---~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~ 136 (228)
. +...+...+... +..+|+=..|--++. . +.+. ...+|.+.||.+.-.+|+.+|+
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~-~-~~~~---~~~tvvV~cd~~~Ql~Rl~~Rd------- 147 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA-K-LLKI---CHKTVVVTCDEELQLERLVERD------- 147 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH-h-HHhh---eeeEEEEEECcHHHHHHHHHhc-------
Confidence 0 111111111111 444444333322221 1 2222 3458999999999999999992
Q ss_pred ccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 137 VYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 137 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
..+++..+.|+...... .+.-... -+++|++.+ +++.++|...+..
T Consensus 148 --------------------------~lse~dAe~Rl~sQmp~----~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~~~ 194 (225)
T KOG3220|consen 148 --------------------------ELSEEDAENRLQSQMPL----EKKCELA--DVVIDNNGSLEDLYEQVEKVLAL 194 (225)
T ss_pred --------------------------cccHHHHHHHHHhcCCH----HHHHHhh--heeecCCCChHHHHHHHHHHHHH
Confidence 34566777777655333 2222222 357888888 8888888776543
No 90
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.41 E-value=2.4e-12 Score=95.23 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=64.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCceEE
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNYLL 88 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~il 88 (228)
+|+|.|+|||||||+|+.|++.+++++++.+.+....+. ..... ...... .+......+.. +.. ...||+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~------~~~~~-~~~~~~-i~~~l~~~~~~-~~~-~~~~Vi 70 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG------KLASE-VAAIPE-VRKALDERQRE-LAK-KPGIVL 70 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH------HHHHH-hcccHh-HHHHHHHHHHH-Hhh-CCCEEE
Confidence 589999999999999999999999999999744222211 11000 000000 01111222222 222 567999
Q ss_pred cCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 89 DGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 89 dg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
||...... + . ...+.+|||++|++.+.+|+..|
T Consensus 71 dg~~~~~~----~--~-~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 71 EGRDIGTV----V--F-PDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred EeeeeeeE----E--c-CCCCEEEEEECCHHHHHHHHHHH
Confidence 99532111 1 1 23679999999999999999996
No 91
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.40 E-value=9.9e-12 Score=95.02 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=96.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCCh-------HHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD-------DLMIDLVKNEV 79 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l 79 (228)
+.+++|.|++||||||+++.|+..++..+++.+++.... ..+. +..|....+ ..+...+...+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDK-MSQGIPLTDEDRLPWLERLNDASYSLY 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHH-HhcCCCCCcccchHHHHHHHHHHHHHH
Confidence 457999999999999999999999998888886652210 0001 111211111 11222222221
Q ss_pred hccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy6801 80 KDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLI 159 (228)
Q Consensus 80 ~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~ 159 (228)
.....++|+..+... .....+... ..+-.+|+|++|++++.+|+.+|..+
T Consensus 73 ~~~~~g~iv~s~~~~-~~R~~~r~~-~~~~~~v~l~a~~~~l~~Rl~~R~~~---------------------------- 122 (176)
T PRK09825 73 KKNETGFIVCSSLKK-QYRDILRKS-SPNVHFLWLDGDYETILARMQRRAGH---------------------------- 122 (176)
T ss_pred hcCCCEEEEEEecCH-HHHHHHHhh-CCCEEEEEEeCCHHHHHHHHhcccCC----------------------------
Confidence 111567777554322 222333333 33446899999999999999999310
Q ss_pred cCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCCCC
Q psy6801 160 QRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIPPL 219 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~~~ 219 (228)
.-.. ..+..+...+...-..+.-++.||++.+ +++.+++...+...+..+
T Consensus 123 ---~~~~-------~vl~~Q~~~~e~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (176)
T PRK09825 123 ---FMPP-------DLLQSQFDALERPCADEHDIARIDVNHDIENVTEQCRQAVQAFRQAL 173 (176)
T ss_pred ---CCCH-------HHHHHHHHHcCCCCCCcCCeEEEECCCCHHHHHHHHHHHHHHHHhcc
Confidence 0112 2222222211111111234899999999 999999999998887665
No 92
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.40 E-value=2.6e-11 Score=92.76 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=66.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcce--eehhHHHHHHHhccChhhHHHHHH-HHC-CCCCChH-------HHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKH--IATGDILRSHIAQNTTLGLKAKEY-MNK-GLLVPDD-------LMIDLV 75 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~-------~~~~~~ 75 (228)
..+|++.|+|||||||+|+.|++.++..+ ++.|++.......... .+ ... ... +..-+.. .....+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 78 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQD-AE--GGIEFDGDGGVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcc-cc--cccccCccCCcccchHHHHHHHHHHHHH
Confidence 35799999999999999999999986644 4776665432111100 00 000 000 0001111 122223
Q ss_pred HHHHhccCCceEEcC-CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 76 KNEVKDLKCNYLLDG-FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 76 ~~~l~~~~~~~ildg-~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
...+.. +..+|+|. ++........+......+-..|+|.||.+++.+|+.+|
T Consensus 79 ~~~l~~-G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R 131 (175)
T cd00227 79 AAMARA-GANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETAR 131 (175)
T ss_pred HHHHhC-CCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhc
Confidence 333333 88899996 54222222222222122346899999999999999998
No 93
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.39 E-value=6.4e-12 Score=95.82 Aligned_cols=164 Identities=18% Similarity=0.276 Sum_probs=89.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC---cceeehhH-HHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN---VKHIATGD-ILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL 82 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~---~~~i~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (228)
|+.|++.|+|||||||+|+.|++.+. ...++.+. ..+-.. -+..++.....+... .+.....++..++.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~-~DEslpi~ke~yres----~~ks~~rlldSalk-- 73 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGIL-WDESLPILKEVYRES----FLKSVERLLDSALK-- 73 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhee-cccccchHHHHHHHH----HHHHHHHHHHHHhc--
Confidence 46799999999999999999999882 22232211 211111 011111111111110 01112234444444
Q ss_pred CCceEEcC--CCCC-HHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy6801 83 KCNYLLDG--FPRT-YDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLI 159 (228)
Q Consensus 83 ~~~~ildg--~p~~-~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~ 159 (228)
+.-+|+|. |... +.|+....+..-.+-.+||+.+|.++|.+|-..|
T Consensus 74 n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er------------------------------- 122 (261)
T COG4088 74 NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER------------------------------- 122 (261)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC-------------------------------
Confidence 45566776 3333 4444444444344667999999999999997666
Q ss_pred cCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 160 QRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
...-.++.+++-+.+|..=- + ..+|+ .-+++||.++. .++.+.|...+.
T Consensus 123 -gepip~Evl~qly~RfEePn-~-~~rWD--spll~id~~d~~t~~IDfiesvl~ 172 (261)
T COG4088 123 -GEPIPEEVLRQLYDRFEEPN-P-DRRWD--SPLLVIDDSDVSTEVIDFIESVLR 172 (261)
T ss_pred -CCCCCHHHHHHHHHhhcCCC-C-Ccccc--CceEEEecccccccchhHHHHHHH
Confidence 12233455555555553211 1 11222 22667776666 888888877665
No 94
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.39 E-value=1.1e-11 Score=96.22 Aligned_cols=112 Identities=17% Similarity=0.260 Sum_probs=62.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehh--------HHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATG--------DILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVK 80 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~--------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (228)
.|+|+|++||||||+++.|++.+++.++.-. .+++..+............++. .. ....+.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~------~~-r~~~~~~~~~ 73 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFL------LS-RLKQYKDALE 73 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccccccCCCCCCHHHHHhCHHhccHHHHHHHH------HH-HHHHHHHHHh
Confidence 4899999999999999999998876544211 1122211100000000010110 00 1111111121
Q ss_pred ---ccCCceEEcCCCCCHHH------------------H----HHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 81 ---DLKCNYLLDGFPRTYDQ------------------A----MALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 81 ---~~~~~~ildg~p~~~~~------------------~----~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
. +..+|+|.++.+-.. . ..+......||++|||+++++++.+|+.+|
T Consensus 74 ~~~~-~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R 145 (193)
T cd01673 74 HLST-GQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKR 145 (193)
T ss_pred hccc-CCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 2 677888986654110 0 111111246999999999999999999988
No 95
>PRK12338 hypothetical protein; Provisional
Probab=99.38 E-value=2.9e-11 Score=99.59 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=98.3
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhcc--Chhh-HHHHHHHHCCC-------CCC------
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQN--TTLG-LKAKEYMNKGL-------LVP------ 67 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~--~~~~-~~~~~~~~~~~-------~~~------ 67 (228)
||.|.+|+|.|+|||||||+|..||+++|+.++..+|.+++.+... .++. ....+....++ ..+
T Consensus 1 m~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~ 80 (319)
T PRK12338 1 MRKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELIC 80 (319)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHH
Confidence 5678899999999999999999999999999887778888865431 1110 00111111111 000
Q ss_pred ------hHHHHHHHHHHHhcc---CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCccc
Q psy6801 68 ------DDLMIDLVKNEVKDL---KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVY 138 (228)
Q Consensus 68 ------~~~~~~~~~~~l~~~---~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~ 138 (228)
-..+...+...+.+. +..+|++|.-...............+-.++++..+.+..++|...|.. .++
T Consensus 81 ~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~--~~~--- 155 (319)
T PRK12338 81 AGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAM--EIK--- 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhh--ccC---
Confidence 011222222222221 778999994222222221111111223456666888999999999832 111
Q ss_pred ccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCCcchHHHHHHHHhhcCC
Q psy6801 139 NLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTTDEIWPRIYEHLNIRIP 217 (228)
Q Consensus 139 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~e~v~~~i~~~l~~~~~ 217 (228)
|.. ...+.+...+...+.+.+...+.+ +..+++.+-++.++.|.+.|.....
T Consensus 156 ----------------------r~~----~~l~~f~~Ir~Iq~~l~~~A~e~~-VpvI~N~did~Tv~~ile~I~e~s~ 207 (319)
T PRK12338 156 ----------------------RGG----KQLEYFRENRIIHDHLVEQAREHN-VPVIKNDDIDCTVKKMLSYIREVCV 207 (319)
T ss_pred ----------------------Cch----hhhhChHHHHHHHHHHHHhHhhCC-CceeCCCcHHHHHHHHHHHHHhheE
Confidence 111 112223333333344444433333 3445544338888888888876553
No 96
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.37 E-value=1.9e-11 Score=93.50 Aligned_cols=116 Identities=19% Similarity=0.179 Sum_probs=66.4
Q ss_pred CCcccccceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHH
Q psy6801 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLV 75 (228)
Q Consensus 1 m~~~~~~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (228)
|..+..|..|+|+|++||||||+++.|++.+. ..+++. |.+++.+.... .... .... .......+
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~-d~~r~~~~~~~-~~~~-~~~~-------~~~~~~~l 70 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG-DELREILGHYG-YDKQ-SRIE-------MALKRAKL 70 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec-HHHHhhcCCCC-CCHH-HHHH-------HHHHHHHH
Confidence 55556678999999999999999999999985 566665 44455432110 0000 0000 00011112
Q ss_pred HHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhc
Q psy6801 76 KNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127 (228)
Q Consensus 76 ~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~ 127 (228)
...+...+..+|+|+... ......+......+..+|||++|++++.+|..+
T Consensus 71 ~~~l~~~g~~VI~~~~~~-~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 71 AKFLADQGMIVIVTTISM-FDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred HHHHHhCCCEEEEEeCCc-HHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchh
Confidence 222222156678887432 112222222224456799999999999999754
No 97
>PRK06547 hypothetical protein; Provisional
Probab=99.37 E-value=2.4e-12 Score=97.95 Aligned_cols=121 Identities=15% Similarity=0.151 Sum_probs=70.1
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHH-HHHCCCCCChH--HHHHHHHH--HH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKE-YMNKGLLVPDD--LMIDLVKN--EV 79 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~--~l 79 (228)
..+++|+|.|++||||||+|+.|++.++..+++.|++..... ......+.+.. .+..|....-. ........ .+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l 91 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-GLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSV 91 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc-cCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEe
Confidence 456789999999999999999999999999999988764311 10111112222 22223211000 00000000 01
Q ss_pred hccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 80 KDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 80 ~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.. ...+|++|......+...+... ....++|||++|.+++.+|+..|
T Consensus 92 ~~-~~vVIvEG~~al~~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 92 EP-GRRLIIEGVGSLTAANVALASL-LGEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred CC-CCeEEEEehhhccHHHHHHhcc-CCCEEEEEEECCHHHHHHHHHhc
Confidence 11 4567788842222222222211 22238999999999999999999
No 98
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.37 E-value=1.3e-11 Score=92.75 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=65.3
Q ss_pred CCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHC-CCCCChHHHHHHHHHHHhccCCceEEc---CC
Q psy6801 16 PGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK-GLLVPDDLMIDLVKNEVKDLKCNYLLD---GF 91 (228)
Q Consensus 16 ~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ild---g~ 91 (228)
|||||||+++.||+.++++++++|+++.+... ..+.+++.. |..........++.+.+. ..+.|+. |.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g------~si~~i~~~~G~~~fr~~E~~~l~~l~~--~~~~VIa~GGG~ 72 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG------MSISEIFAEEGEEAFRELESEALRELLK--ENNCVIACGGGI 72 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHC--SSSEEEEE-TTG
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC------CcHHHHHHcCChHHHHHHHHHHHHHHhc--cCcEEEeCCCCC
Confidence 79999999999999999999999999877633 333333332 211112223333333333 3355553 25
Q ss_pred CCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 92 PRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 92 p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+........+... ..+|||+++++.+.+|+..+
T Consensus 73 ~~~~~~~~~L~~~----g~vI~L~~~~~~l~~Rl~~~ 105 (158)
T PF01202_consen 73 VLKEENRELLKEN----GLVIYLDADPEELAERLRAR 105 (158)
T ss_dssp GGSHHHHHHHHHH----SEEEEEE--HHHHHHHHHHH
T ss_pred cCcHHHHHHHHhC----CEEEEEeCCHHHHHHHHhCC
Confidence 5566656666533 57999999999999999887
No 99
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.36 E-value=2.4e-11 Score=96.45 Aligned_cols=41 Identities=24% Similarity=0.475 Sum_probs=37.5
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHH
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRS 44 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~ 44 (228)
||.+++|+|.|++||||||+++.|++++|+++++.++++|.
T Consensus 1 ~~~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 1 MMKAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 45567899999999999999999999999999999998776
No 100
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.36 E-value=2.8e-12 Score=100.60 Aligned_cols=167 Identities=17% Similarity=0.223 Sum_probs=92.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh-Ccce-eehhHHH-HHHHhccChh----hHHHHHHHHCCCCCC-----hHH---
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF-NVKH-IATGDIL-RSHIAQNTTL----GLKAKEYMNKGLLVP-----DDL--- 70 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~-~~~~-i~~~d~~-~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~--- 70 (228)
.+..|+|+||+||||||+++.|.+.. .+.+ +...... +..-..+..+ ...+...+..|..+. ...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~YGt 91 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYYGV 91 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCceecC
Confidence 45689999999999999999998642 1101 0000000 0000000000 011222222222111 111
Q ss_pred HHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeC--HHHHHHHHhcCccCCCCCcccccCCCCCCCC
Q psy6801 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVP--KEVIIDRLSKRWIHPASGRVYNLDFNAPKKP 148 (228)
Q Consensus 71 ~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~--~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~ 148 (228)
....+...+.. +..+|++.-+. .+..+.. ..|+.++++.+| .+++.+|+..|.
T Consensus 92 ~~~~i~~~~~~-g~~vi~~~~~~---g~~~l~~--~~pd~~~if~~pps~e~l~~Rl~~R~------------------- 146 (206)
T PRK14738 92 PKAPVRQALAS-GRDVIVKVDVQ---GAASIKR--LVPEAVFIFLAPPSMDELTRRLELRR------------------- 146 (206)
T ss_pred CHHHHHHHHHc-CCcEEEEcCHH---HHHHHHH--hCCCeEEEEEeCCCHHHHHHHHHHcC-------------------
Confidence 11234444554 77788876332 3333433 347776666654 568899999881
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 149 GIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
++..+.+.+|+..+....... ....++.||++.+ ++++++|.+.|....
T Consensus 147 --------------~~~~~~~~~Rl~~~~~e~~~~-----~~~~~~iId~~~~~e~v~~~i~~~l~~~~ 196 (206)
T PRK14738 147 --------------TESPEELERRLATAPLELEQL-----PEFDYVVVNPEDRLDEAVAQIMAIISAEK 196 (206)
T ss_pred --------------CCCHHHHHHHHHHHHHHHhcc-----cCCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 234567777777665433211 1124778999999 999999999998763
No 101
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.34 E-value=6.2e-11 Score=88.25 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=68.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCC---hHHHHHH----HHHHH-h
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP---DDLMIDL----VKNEV-K 80 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~l-~ 80 (228)
+|+|.|+|||||||+|+.|++.++..+++.|++..... ...+..+.... ...+... ....+ .
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN----------IAKMAAGIPLNDEDRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHH----------HHHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999977754311 00011111111 0111111 12222 1
Q ss_pred ccCCceEEcCCCCCHHHHHHHHhcC-CCCCEEEEEEeCHHHHHHHHhcCc
Q psy6801 81 DLKCNYLLDGFPRTYDQAMALFKNH-LSPNCVMHINVPKEVIIDRLSKRW 129 (228)
Q Consensus 81 ~~~~~~ildg~p~~~~~~~~l~~~~-~~~~~vi~l~~~~e~~~~R~~~R~ 129 (228)
. +..+|+|.-.........+.... ..+..+|+|.+|.+++.+|+..|.
T Consensus 71 ~-~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 71 A-GEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred C-CCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence 3 67788886333333334444331 234569999999999999999993
No 102
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.33 E-value=6.5e-11 Score=90.77 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=86.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcc----eeehhHHHHHHHhccChh----hHHHHHHHHCCCCC--Ch-----HHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVK----HIATGDILRSHIAQNTTL----GLKAKEYMNKGLLV--PD-----DLMI 72 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~----~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~-----~~~~ 72 (228)
..|+|+|++||||||+++.|+..++.. ++.. ..-+.....+..+ ...+......+... .. ....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRR-VITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeE-EcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 368999999999999999999987532 1110 0001100000000 01111111122110 00 0011
Q ss_pred HHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCc
Q psy6801 73 DLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDD 152 (228)
Q Consensus 73 ~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~ 152 (228)
..+...+.. +..+|+++... ....+... .....+|||++|.+++.+|+..|.
T Consensus 81 ~~i~~~~~~-g~~vv~~g~~~---~~~~~~~~-~~~~~~i~l~~~~~~~~~Rl~~R~----------------------- 132 (179)
T TIGR02322 81 AEIDQWLEA-GDVVVVNGSRA---VLPEARQR-YPNLLVVNITASPDVLAQRLAARG----------------------- 132 (179)
T ss_pred HHHHHHHhc-CCEEEEECCHH---HHHHHHHH-CCCcEEEEEECCHHHHHHHHHHcC-----------------------
Confidence 123333443 67788888532 22223222 233479999999999999999881
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 153 ITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
...++.+.+++.++..... ....+++++++.+ ++++++|.+.+..
T Consensus 133 ----------~~~~~~~~~rl~~~~~~~~-------~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 133 ----------RESREEIEERLARSARFAA-------APADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred ----------CCCHHHHHHHHHHHhhccc-------ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 1123556666644322110 2223566888888 9999999988754
No 103
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.32 E-value=3e-11 Score=95.29 Aligned_cols=39 Identities=21% Similarity=0.437 Sum_probs=35.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~ 45 (228)
+++|.|.||+||||||+++.|++++++.+++.++++|..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 357999999999999999999999999999999887654
No 104
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.32 E-value=8.7e-11 Score=102.79 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=37.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~ 45 (228)
.+++|+|.||+||||||+|+.|++++|+.+++.|+++|..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 5678999999999999999999999999999999998874
No 105
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.31 E-value=1.6e-12 Score=93.15 Aligned_cols=34 Identities=26% Similarity=0.600 Sum_probs=31.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDIL 42 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~ 42 (228)
+|+|.|+|||||||+|+.|++.+|++++++|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5899999999999999999999999999999953
No 106
>PTZ00301 uridine kinase; Provisional
Probab=99.28 E-value=1.9e-11 Score=95.82 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=64.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC-------cceeehhHHHHHHHh--c--------cC-------hhhHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN-------VKHIATGDILRSHIA--Q--------NT-------TLGLKAKEYM 60 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~-------~~~i~~~d~~~~~~~--~--------~~-------~~~~~~~~~~ 60 (228)
|..++|.|.|+|||||||+|+.|++.++ +..++.|++.+..-. . +. .+-+.+ ..+
T Consensus 1 ~~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l-~~L 79 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHL-REL 79 (210)
T ss_pred CCCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHH-HHH
Confidence 3456899999999999999999988762 346677776543210 0 00 001111 112
Q ss_pred HCCCCCChHHHHHHHHHHHhc---c--CCceEEcCC-CCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCcc
Q psy6801 61 NKGLLVPDDLMIDLVKNEVKD---L--KCNYLLDGF-PRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWI 130 (228)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~l~~---~--~~~~ildg~-p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 130 (228)
..|..+.-..+.-........ . ...+|++|+ .... ..+... .|+.||+++|.+++..|...|..
T Consensus 80 ~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~---~~l~~l---~D~~ifvd~~~d~~~~Rr~~Rd~ 149 (210)
T PTZ00301 80 KSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN---AELRNE---MDCLIFVDTPLDICLIRRAKRDM 149 (210)
T ss_pred HcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC---HHHHHh---CCEEEEEeCChhHHHHHHHhhhH
Confidence 222211110000000000000 0 445667883 2111 123322 68899999999999999999943
No 107
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.27 E-value=1.4e-10 Score=87.55 Aligned_cols=104 Identities=14% Similarity=0.176 Sum_probs=58.0
Q ss_pred EcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCCh---HHHHHHHHHH----HhccCCc
Q psy6801 13 IGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD---DLMIDLVKNE----VKDLKCN 85 (228)
Q Consensus 13 ~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----l~~~~~~ 85 (228)
+|++||||||+++.|++.++..+++.|.+..... +. ....|....+ ..+...+... ....+..
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IE-KMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS 70 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hc-cccCCCCCChhhHHHHHHHHHHHHHHHHHcCCce
Confidence 5999999999999999999999999865421100 00 0011111111 1112222211 2111333
Q ss_pred eEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 86 YLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+|+-.+. .......+... ..+-.+|+|++|++++.+|+..|
T Consensus 71 viv~s~~-~~~~r~~~~~~-~~~~~~v~l~a~~~~l~~Rl~~R 111 (163)
T PRK11545 71 LIVCSAL-KKHYRDLLREG-NPNLSFIYLKGDFDVIESRLKAR 111 (163)
T ss_pred EEEEecc-hHHHHHHHHcc-CCCEEEEEEECCHHHHHHHHHhc
Confidence 4553332 22222333333 33446899999999999999999
No 108
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.26 E-value=1.8e-10 Score=101.09 Aligned_cols=107 Identities=19% Similarity=0.327 Sum_probs=66.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHH-CCCCCChHHHHHHHHHHHhccCCceE
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMN-KGLLVPDDLMIDLVKNEVKDLKCNYL 87 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~i 87 (228)
.|+|+|+|||||||+++.|++.++++++++|+++.+.. |..+.+.+. .|.....+.-.+.+.+... ....|
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~------g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~--~~~~V 73 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE------GRSVRRIFEEDGEEYFRLKEKELLRELVE--RDNVV 73 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc------CCCHHHHHHHhhhHHHHHHHHHHHHHHhh--cCCEE
Confidence 69999999999999999999999999999999886642 222222222 1221112222222222211 23344
Q ss_pred E-cC--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 88 L-DG--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 88 l-dg--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+ .| .+........+.. ..+|||++|++++.+|+..+
T Consensus 74 is~Gggvv~~~~~r~~l~~-----~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 74 VATGGGVVIDPENRELLKK-----EKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred EECCCccccChHHHHHHhc-----CeEEEEECCHHHHHHHhccC
Confidence 4 33 2333333444432 35899999999999999765
No 109
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.25 E-value=1.5e-10 Score=90.94 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=32.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh---CcceeehhHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF---NVKHIATGDILR 43 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~~d~~~ 43 (228)
.+.+|+|.|++||||||+++.|++.+ .+.+++.|++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 56799999999999999999999998 345678877654
No 110
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.23 E-value=1.7e-10 Score=90.28 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=90.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhc---cCh----hhHHHHHHHHCCCCC-----ChHH---
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQ---NTT----LGLKAKEYMNKGLLV-----PDDL--- 70 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~-----~~~~--- 70 (228)
.+..|+|.||+||||||+++.|+..++..++......|+-... +.+ ..+.+......+..+ ....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 3568999999999999999999998752222211111110000 000 001122222222111 1111
Q ss_pred HHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCC
Q psy6801 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGI 150 (228)
Q Consensus 71 ~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~ 150 (228)
....+...+.. +..+|+|.-+.. ...+......+-.++++.++.+++.+|+..|
T Consensus 84 ~~~~i~~~l~~-g~~vi~dl~~~g---~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R---------------------- 137 (205)
T PRK00300 84 PRSPVEEALAA-GKDVLLEIDWQG---ARQVKKKMPDAVSIFILPPSLEELERRLRGR---------------------- 137 (205)
T ss_pred cHHHHHHHHHc-CCeEEEeCCHHH---HHHHHHhCCCcEEEEEECcCHHHHHHHHHhc----------------------
Confidence 12334444444 777788864322 2333333122222444456788999999998
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 151 DDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
..++.+.+++++..+..... ++...+.++ + +.+ ++++++|...+...
T Consensus 138 -----------~~~~~~~i~~rl~~~~~~~~----~~~~~d~vi-~--n~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 138 -----------GTDSEEVIARRLAKAREEIA----HASEYDYVI-V--NDDLDTALEELKAIIRAE 185 (205)
T ss_pred -----------CCCCHHHHHHHHHHHHHHHH----hHHhCCEEE-E--CCCHHHHHHHHHHHHHHH
Confidence 23456788888888865543 233333343 3 337 99999999999875
No 111
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.23 E-value=8e-11 Score=91.48 Aligned_cols=118 Identities=15% Similarity=0.161 Sum_probs=70.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcc---eeehhHHHHHHHhc----------c------ChhhHHHHHHHHCCCCCC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVK---HIATGDILRSHIAQ----------N------TTLGLKAKEYMNKGLLVP 67 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~---~i~~~d~~~~~~~~----------~------~~~~~~~~~~~~~~~~~~ 67 (228)
+.+|.|.|++||||||+|+.|++.|+.. .|+.|++....-.. . .++-...-..+..|..+.
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v~ 87 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPVD 87 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCccc
Confidence 3689999999999999999999999854 77887776532110 0 011111112333444333
Q ss_pred hHHHHHHHHHHHhcc-----CCceEEcCC-CCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCcc
Q psy6801 68 DDLMIDLVKNEVKDL-----KCNYLLDGF-PRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWI 130 (228)
Q Consensus 68 ~~~~~~~~~~~l~~~-----~~~~ildg~-p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 130 (228)
...+.-....+..+. .+.+|++|+ +..- +.+.+. .|+.||+++|.+++..|...|..
T Consensus 88 ~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d---~~lr~~---~d~kIfvdtd~D~RliRri~RD~ 150 (218)
T COG0572 88 LPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD---ERLRDL---MDLKIFVDTDADVRLIRRIKRDV 150 (218)
T ss_pred ccccchhcccccCCccccCCCcEEEEeccccccc---HHHHhh---cCEEEEEeCCccHHHHHHHHHHH
Confidence 322222222222111 566788994 3222 223333 68899999999999999888844
No 112
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.22 E-value=4.6e-10 Score=102.30 Aligned_cols=39 Identities=23% Similarity=0.452 Sum_probs=36.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~ 45 (228)
.++|+|.||+||||||+++.|++++++++++++.++|..
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 358999999999999999999999999999999998875
No 113
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.21 E-value=6.1e-09 Score=77.04 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=69.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc---
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--- 82 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 82 (228)
++++++.|-||+||||+++.+.+.+ +...+++++++.+.-.. ..+-+ .++-+. .+|.+....+...+..+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k-~glve-~rD~~R---klp~e~Q~~lq~~Aa~rI~~~ 78 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKK-KGLVE-HRDEMR---KLPLENQRELQAEAAKRIAEM 78 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHH-hCCcc-cHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 88889999987653211 11111 111222 234444444333332222
Q ss_pred CCceEEcCC----------CCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhc
Q psy6801 83 KCNYLLDGF----------PRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127 (228)
Q Consensus 83 ~~~~ildg~----------p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~ 127 (228)
...+|+|++ |....+ .... ++||.++.|..+++.+..|..+
T Consensus 79 ~~~iivDtH~~IkTP~GylpgLP~~---Vl~~-l~pd~ivllEaDp~~Il~RR~~ 129 (189)
T COG2019 79 ALEIIVDTHATIKTPAGYLPGLPSW---VLEE-LNPDVIVLLEADPEEILERRLR 129 (189)
T ss_pred hhceEEeccceecCCCccCCCCcHH---HHHh-cCCCEEEEEeCCHHHHHHHHhc
Confidence 333778853 221211 1122 6799999999999998887554
No 114
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.21 E-value=1.3e-10 Score=89.04 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=88.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhc---cCh----hhHHHHHHHHCCCCCCh--------HHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQ---NTT----LGLKAKEYMNKGLLVPD--------DLMI 72 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--------~~~~ 72 (228)
.+|+|.||+||||||+++.|++.+...++......++.... +.. ....+...+..+..+.. ....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 47999999999999999999997754444332222211000 000 00112222233322111 0112
Q ss_pred HHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCc
Q psy6801 73 DLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDD 152 (228)
Q Consensus 73 ~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~ 152 (228)
..+...+.+ +..+|+|.- ...+..+......+..++++..+.+.+.+|+..|
T Consensus 82 ~~i~~~~~~-g~~vi~d~~---~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r------------------------ 133 (180)
T TIGR03263 82 SPVEEALAA-GKDVLLEID---VQGARQVKKKFPDAVSIFILPPSLEELERRLRKR------------------------ 133 (180)
T ss_pred HHHHHHHHC-CCeEEEECC---HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc------------------------
Confidence 344555555 777888863 2233344444223334555567789999999988
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 153 ITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
..+..+.+++++..+..... +.... -++|.++ + ++.+++|.+.+.
T Consensus 134 ---------~~~~~~~i~~rl~~~~~~~~-----~~~~~-d~~i~n~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 134 ---------GTDSEEVIERRLAKAKKEIA-----HADEF-DYVIVND-DLEKAVEELKSIIL 179 (180)
T ss_pred ---------CCCCHHHHHHHHHHHHHHHh-----ccccC-cEEEECC-CHHHHHHHHHHHHh
Confidence 23456678888877753321 11111 2334443 6 888888887763
No 115
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.20 E-value=7.4e-11 Score=108.32 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=35.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~ 45 (228)
++|+|.|||||||||+|+.|++++|+.+++++.++|..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 37999999999999999999999999999999988774
No 116
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.18 E-value=2.8e-10 Score=87.72 Aligned_cols=163 Identities=16% Similarity=0.115 Sum_probs=90.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhc---cC----hhhHHHHHHHHCCCCCCh--------HH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQ---NT----TLGLKAKEYMNKGLLVPD--------DL 70 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~--------~~ 70 (228)
.|+.|+|+||+||||||+++.|.+.+.-.++.....-|..-.. +. -..+.+...+..|..+.- -.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt 82 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence 3668999999999999999999888632222221111110000 00 000122233333321111 01
Q ss_pred HHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCC--EEEEEEeC-HHHHHHHHhcCccCCCCCcccccCCCCCCC
Q psy6801 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPN--CVMHINVP-KEVIIDRLSKRWIHPASGRVYNLDFNAPKK 147 (228)
Q Consensus 71 ~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~--~vi~l~~~-~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~ 147 (228)
-...+...+.. ++.+|+|.-+....++. .. .|+ .+||+.+| .+++.+|+.+|
T Consensus 83 ~~~~i~~~~~~-g~~~i~d~~~~g~~~l~---~~--~~~~~~~Ifi~pps~e~l~~RL~~R------------------- 137 (186)
T PRK14737 83 PKAFIEDAFKE-GRSAIMDIDVQGAKIIK---EK--FPERIVTIFIEPPSEEEWEERLIHR------------------- 137 (186)
T ss_pred cHHHHHHHHHc-CCeEEEEcCHHHHHHHH---Hh--CCCCeEEEEEECCCHHHHHHHHHhc-------------------
Confidence 12334445555 88899987544444443 32 233 58899885 58899999888
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 148 PGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
...+++.+++++....... + +.... -.+|+++ + ++..++|.+.|..
T Consensus 138 --------------~~~s~e~i~~Rl~~~~~e~----~-~~~~~-D~vI~N~-dle~a~~ql~~ii~~ 184 (186)
T PRK14737 138 --------------GTDSEESIEKRIENGIIEL----D-EANEF-DYKIIND-DLEDAIADLEAIICG 184 (186)
T ss_pred --------------CCCCHHHHHHHHHHHHHHH----h-hhccC-CEEEECc-CHHHHHHHHHHHHhc
Confidence 2335677888887654221 1 22111 2345555 6 8888998887754
No 117
>KOG3308|consensus
Probab=99.15 E-value=5.9e-10 Score=84.68 Aligned_cols=178 Identities=17% Similarity=0.207 Sum_probs=97.1
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHh-CcceeehhHHHHHHHhc----c-------------ChhhHHHHHHHHCCCCC
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHF-NVKHIATGDILRSHIAQ----N-------------TTLGLKAKEYMNKGLLV 66 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~-~~~~i~~~d~~~~~~~~----~-------------~~~~~~~~~~~~~~~~~ 66 (228)
|+..+|.|.|.+.|||||+|+.|+..| |..+|+-||++...-+- + ..+.+.+...+......
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~ 81 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNA 81 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCcccc
Confidence 556789999999999999999999998 56788888876543211 0 11122222333332222
Q ss_pred ChHHHHHHHHH--------H--Hhcc-CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCC
Q psy6801 67 PDDLMIDLVKN--------E--VKDL-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASG 135 (228)
Q Consensus 67 ~~~~~~~~~~~--------~--l~~~-~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g 135 (228)
++. -..++.. . .... ...+++|||-.. +..-+.. .+|..|++..|.++|++|...|..
T Consensus 82 ~~a-r~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy--~y~p~~~---~~d~~im~~~~y~~~krRr~~Rt~----- 150 (225)
T KOG3308|consen 82 PEA-REHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIY--NYKPQVD---LFDRIIMLTLDYETCKRRREARTY----- 150 (225)
T ss_pred chH-hhhhhhhhHHHHHhhhcCcccccCcEEEEecceEE--ecchhhh---hhhhheeeeccHHHHHHhhccccc-----
Confidence 221 1111111 1 1111 555888995211 1122222 267789999999999999998843
Q ss_pred cccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 136 RVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
-||...+=.+.|. ...|.++....... ...-..-++++.+ +.+..+|...+.+
T Consensus 151 -------y~p~~tgyfd~~~-----------------~P~Y~~~~~~~~d~--~~h~~~flngdvs~e~~~~~v~~~i~~ 204 (225)
T KOG3308|consen 151 -------YPPDDTGYFDPVV-----------------WPHYEKNFEEARDR--SRHDSLFLNGDVSEEKLDDKVNESINQ 204 (225)
T ss_pred -------CCCCCCccccCcc-----------------chHHHHHHHHHHhh--cccceeeecccchhhhchhhhhhhhcc
Confidence 2332222111110 23343333222111 1112445777777 8888888888866
Q ss_pred cCCCC
Q psy6801 215 RIPPL 219 (228)
Q Consensus 215 ~~~~~ 219 (228)
..+-.
T Consensus 205 ~~~~~ 209 (225)
T KOG3308|consen 205 RQQIR 209 (225)
T ss_pred ccccc
Confidence 65443
No 118
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.14 E-value=2.8e-10 Score=89.38 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=63.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC---cceeehhHHHHHHHhc------c----C--hh-hHHHHHH---HHCCCCCC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN---VKHIATGDILRSHIAQ------N----T--TL-GLKAKEY---MNKGLLVP 67 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~---~~~i~~~d~~~~~~~~------~----~--~~-~~~~~~~---~~~~~~~~ 67 (228)
+.+|+|.|++||||||+++.|+..++ +.+++.|+++...... . . .+ ...+.+. +..|..+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~v~ 85 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSPID 85 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCCEe
Confidence 45899999999999999999998875 4567776654321000 0 0 00 0000111 11121111
Q ss_pred hHHHHHHHHHHHhc---c--CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCc
Q psy6801 68 DDLMIDLVKNEVKD---L--KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRW 129 (228)
Q Consensus 68 ~~~~~~~~~~~l~~---~--~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 129 (228)
-..+.......... . ...+|+||++.... ..+.. .+|.+||+++|.+++..|+..|.
T Consensus 86 ~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~--~~~~~---~~d~~I~v~~~~~~~l~R~~~R~ 147 (207)
T TIGR00235 86 VPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFD--ERLRD---LMDLKIFVDTPLDIRLIRRIERD 147 (207)
T ss_pred cccceeecCCCCCceEEeCCCCEEEEEehhhhch--HhHHH---hCCEEEEEECChhHHHHHHHHHH
Confidence 10000000000000 0 34577788643221 12322 27899999999999999998883
No 119
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.13 E-value=8.8e-10 Score=89.60 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=57.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKD 81 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (228)
|+.|+|+|.|||||||+|+.|++.+ .+.+++.+++. +.... +.....+.. ....+...+...+..
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~-y~~~~~Ek~------~R~~l~s~v~r~ls~ 70 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRND-YADSKKEKE------ARGSLKSAVERALSK 70 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S--GGGHHH------HHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhh-hhchhhhHH------HHHHHHHHHHHhhcc
Confidence 4689999999999999999999986 33456654443 11111 100000000 001123333444443
Q ss_pred cCCceEEcC--CCCC-HHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 82 LKCNYLLDG--FPRT-YDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 82 ~~~~~ildg--~p~~-~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
...+|+|+ |.+. +.++-.+......+..+||+.+|.+.+.+|=..|
T Consensus 71 -~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R 119 (270)
T PF08433_consen 71 -DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKR 119 (270)
T ss_dssp --SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHT
T ss_pred -CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhcc
Confidence 66788887 3332 3333334443234557999999999999999888
No 120
>PRK07667 uridine kinase; Provisional
Probab=99.12 E-value=2.7e-10 Score=88.49 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=32.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRSH 45 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~~ 45 (228)
.+|.|.|++||||||+|+.|++.+ ++.+++.|+++...
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~ 60 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER 60 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence 589999999999999999999987 35689999977654
No 121
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.12 E-value=1.2e-10 Score=83.94 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=54.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHh-ccChhhHHHHHHHHCCCCCChHHHH---HHHHHHHh-cc-C
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIA-QNTTLGLKAKEYMNKGLLVPDDLMI---DLVKNEVK-DL-K 83 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~-~~-~ 83 (228)
|+|.|+|||||||+|+.|+++++. .+..... ......................... ..+..... .. .
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGD-------IIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG 73 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCH-------HHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEECCCCCCHHHHHHHHHHHHCc-------HHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence 789999999999999999999822 2221111 1110000000011112222333222 22222211 11 6
Q ss_pred CceEEcCCCCCHHHHHHHHhcCCCCCEE-EEEEeCHHHHHHHHhcC
Q psy6801 84 CNYLLDGFPRTYDQAMALFKNHLSPNCV-MHINVPKEVIIDRLSKR 128 (228)
Q Consensus 84 ~~~ildg~p~~~~~~~~l~~~~~~~~~v-i~l~~~~e~~~~R~~~R 128 (228)
..+|+|++....... ...... |+|+||++++.+|+..|
T Consensus 74 ~~~iid~~~~~~~~~-------~~~~~~~i~L~~~~e~~~~R~~~R 112 (129)
T PF13238_consen 74 RNIIIDGILSNLELE-------RLFDIKFIFLDCSPEELRKRLKKR 112 (129)
T ss_dssp SCEEEEESSEEECET-------TEEEESSEEEE--HHHHHHHHHCT
T ss_pred CcEEEecccchhccc-------ccceeeEEEEECCHHHHHHHHHhC
Confidence 778999863321100 111223 99999999999999999
No 122
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.12 E-value=1.6e-09 Score=100.22 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=37.6
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~ 45 (228)
|..+.|+|.||+||||||+|+.||+++++.+++++.++|..
T Consensus 32 m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 32 MGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 44458999999999999999999999999999999998875
No 123
>PRK06696 uridine kinase; Validated
Probab=99.11 E-value=5.3e-10 Score=88.78 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=31.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh---Ccce--eehhHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF---NVKH--IATGDILR 43 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~---~~~~--i~~~d~~~ 43 (228)
.+.+|+|.|++||||||+|+.|++.+ |..+ +++|++..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 46799999999999999999999999 5444 45777764
No 124
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.09 E-value=4.4e-10 Score=86.41 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=32.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh-CcceeehhHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF-NVKHIATGDILRS 44 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~-~~~~i~~~d~~~~ 44 (228)
+|+|.|++||||||+|+.|++.+ ++.+|+.|++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 48899999999999999999999 6889999888653
No 125
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.09 E-value=3.6e-09 Score=79.04 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=62.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh---Cc-ceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHH--HHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF---NV-KHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMID--LVKNEV 79 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~---~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l 79 (228)
.+..|+++|.+||||||+|..|.+++ |. .++--+|.+|..+..+-.+...-+ .+.+.. -+...+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR----------~eniRRvaevAkll 91 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDR----------IENIRRVAEVAKLL 91 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHH----------HHHHHHHHHHHHHH
Confidence 46789999999999999999999998 33 233335778877654433221110 011111 111112
Q ss_pred hccCCceEEcCCCC----CHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhc
Q psy6801 80 KDLKCNYLLDGFPR----TYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127 (228)
Q Consensus 80 ~~~~~~~ildg~p~----~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~ 127 (228)
.. ...+++..|.+ .++++..+... ..-+-||++||.++|.+|--+
T Consensus 92 ~d-aG~iviva~ISP~r~~R~~aR~~~~~--~~FiEVyV~~pl~vce~RDpK 140 (197)
T COG0529 92 AD-AGLIVIVAFISPYREDRQMARELLGE--GEFIEVYVDTPLEVCERRDPK 140 (197)
T ss_pred HH-CCeEEEEEeeCccHHHHHHHHHHhCc--CceEEEEeCCCHHHHHhcCch
Confidence 22 33445555433 34444444332 122479999999999888443
No 126
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.06 E-value=4.3e-09 Score=79.49 Aligned_cols=164 Identities=17% Similarity=0.243 Sum_probs=91.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcce-eehhHHHHHHHhc---cCh----hhHHHHHHHHCCCCCCh-----H---
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKH-IATGDILRSHIAQ---NTT----LGLKAKEYMNKGLLVPD-----D--- 69 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~-i~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~-----~--- 69 (228)
+++.++|+||+|+||||+.+.|-+..++.+ ||. --|+.=+. +.+ ..+.....+..+..+.= .
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~--TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSA--TTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEe--ccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 567899999999999999999999885422 332 11110000 000 01223333333322110 0
Q ss_pred HHHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCH-HHHHHHHhcCccCCCCCcccccCCCCCCCC
Q psy6801 70 LMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPK-EVIIDRLSKRWIHPASGRVYNLDFNAPKKP 148 (228)
Q Consensus 70 ~~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~-e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~ 148 (228)
....-+...+.. +..+|+|- +++-+..+... .++-..||+.+|. +.+.+|+..|
T Consensus 81 T~~~~ve~~~~~-G~~vildI---d~qGa~qvk~~-~p~~v~IFi~pPs~eeL~~RL~~R-------------------- 135 (191)
T COG0194 81 TSREPVEQALAE-GKDVILDI---DVQGALQVKKK-MPNAVSIFILPPSLEELERRLKGR-------------------- 135 (191)
T ss_pred CcHHHHHHHHhc-CCeEEEEE---ehHHHHHHHHh-CCCeEEEEEcCCCHHHHHHHHHcc--------------------
Confidence 112333444444 78888863 12223334433 3333467777666 7888888888
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCCcchHHHHHHHHhhc
Q psy6801 149 GIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTTDEIWPRIYEHLNIR 215 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~e~v~~~i~~~l~~~ 215 (228)
..++.+.+.+|+.......... ...+++ ++| +.-+..++++...+...
T Consensus 136 -------------gtds~e~I~~Rl~~a~~Ei~~~----~~fdyv-ivN-dd~e~a~~~l~~ii~ae 183 (191)
T COG0194 136 -------------GTDSEEVIARRLENAKKEISHA----DEFDYV-IVN-DDLEKALEELKSIILAE 183 (191)
T ss_pred -------------CCCCHHHHHHHHHHHHHHHHHH----HhCCEE-EEC-ccHHHHHHHHHHHHHHH
Confidence 4567889999998887664433 223332 332 22277788887776643
No 127
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.05 E-value=4.9e-09 Score=80.08 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=60.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHH--HHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMI--DLVKNEV 79 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l 79 (228)
+.+|+|.|+|||||||+++.|+..+. +.+++.|.+ ++.+.....+...- ....+. ..+...+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~----------r~~~~~~~~~~a~~~ 72 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKED----------RDTNIRRIGFVANLL 72 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhh----------HHHHHHHHHHHHHHH
Confidence 45899999999999999999999882 566777544 44332111110000 000111 1111112
Q ss_pred hccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHH
Q psy6801 80 KDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125 (228)
Q Consensus 80 ~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~ 125 (228)
...+..+++|+..........+... ...-.+|||++|.+++.+|.
T Consensus 73 ~~~g~~vi~~~~~~~~~~~~~l~~~-~~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 73 TRHGVIVLVSAISPYRETREEVRAN-IGNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HhCCCEEEEecCCCCHHHHHHHHhh-cCCeEEEEEcCCHHHHHHhC
Confidence 1115556677632223333444433 23345899999999999994
No 128
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.04 E-value=1.2e-08 Score=83.53 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=70.1
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcc-eeehhHHHHHHHhccC--hhh-HHHHHHHHCC-----CCCChH-H----
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVK-HIATGDILRSHIAQNT--TLG-LKAKEYMNKG-----LLVPDD-L---- 70 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~-~i~~~d~~~~~~~~~~--~~~-~~~~~~~~~~-----~~~~~~-~---- 70 (228)
..|++|+|.|++||||||+|..|++++|.. +++. |.+|+.+-... +.. ....+....+ ...+++ .
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~-D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~ 168 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGT-DSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGF 168 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEec-hHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhH
Confidence 367899999999999999999999999997 5665 66665443210 000 0011111111 011111 1
Q ss_pred ----------HHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCC-EEEEEEeC-HHHHHHHHhcCc
Q psy6801 71 ----------MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPN-CVMHINVP-KEVIIDRLSKRW 129 (228)
Q Consensus 71 ----------~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~-~vi~l~~~-~e~~~~R~~~R~ 129 (228)
+...+...+.+ +...|++|.-........+... .++ +.++|.++ .+..++|...|.
T Consensus 169 ~~~~~~v~~gi~~~I~~~~~~-g~s~IiEGvhl~P~~i~~~~~~--~~~~i~~~l~i~~ee~h~~RF~~R~ 236 (301)
T PRK04220 169 ERHVEPVSVGVEAVIERALKE-GISVIIEGVHIVPGFIKEKYLE--NPNVFMFVLTLSDEEAHKARFYARA 236 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCcEEEecCCCCHHHHHHhhhc--CCCEEEEEEEECCHHHHHHHHHHHH
Confidence 22333444444 8899999965555554443322 133 34555544 488999988883
No 129
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.04 E-value=1.6e-09 Score=95.32 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=72.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
.+..|+++|+|||||||+|+.+++..+..+++.|++- . -......+.+.+.. +..
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L~~-G~s 422 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERALDQ-GKR 422 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHHhC-CCc
Confidence 4568999999999999999999999999999997651 1 01123345556666 899
Q ss_pred eEEcCCCCC---HHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCc
Q psy6801 86 YLLDGFPRT---YDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRW 129 (228)
Q Consensus 86 ~ildg~p~~---~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 129 (228)
+|+|+--.+ +..+..+......+-..+++++|.++++.|...|.
T Consensus 423 VVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~ 469 (526)
T TIGR01663 423 CAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRE 469 (526)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhc
Confidence 999984333 34444444442334468999999999999999994
No 130
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.03 E-value=3.9e-09 Score=82.24 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=30.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---CcceeehhHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF---NVKHIATGDILR 43 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~~d~~~ 43 (228)
+|.|.|++||||||+++.|+..+ ++.+++.|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 48999999999999999999987 467888887653
No 131
>PRK07429 phosphoribulokinase; Provisional
Probab=99.03 E-value=1.1e-09 Score=91.46 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=35.1
Q ss_pred CCccc-ccceEEEEcCCCCChHHHHHHHHHHhC---cceeehhHHH
Q psy6801 1 MLNTL-LMLKAVIIGAPGCGKGTISSRIIDHFN---VKHIATGDIL 42 (228)
Q Consensus 1 m~~~~-~~~~i~i~G~~GsGKTt~a~~L~~~~~---~~~i~~~d~~ 42 (228)
|+.++ .+.+|.|.|++||||||+++.|+..++ ..+++.|++.
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 66654 567999999999999999999999987 5678887764
No 132
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.02 E-value=3e-09 Score=79.09 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=57.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKD 81 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (228)
+..|+|+|.+||||||+|+.|.+++ +..+++. |.+|..+..+-.+...-+.-. -..+..+ ...+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~-------~rr~~~~-A~ll~~ 72 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREEN-------IRRIAEV-AKLLAD 72 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHH-------HHHHHHH-HHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHH-------HHHHHHH-HHHHHh
Confidence 5689999999999999999999998 3456776 555654443322211110000 0001111 111222
Q ss_pred cCCceEEcCCC---CCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHh
Q psy6801 82 LKCNYLLDGFP---RTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLS 126 (228)
Q Consensus 82 ~~~~~ildg~p---~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~ 126 (228)
.+..+|++... ..+.++...... ..-+.||++||.++|.+|-.
T Consensus 73 ~G~ivIva~isp~~~~R~~~R~~~~~--~~f~eVyv~~~~e~~~~RD~ 118 (156)
T PF01583_consen 73 QGIIVIVAFISPYREDREWARELIPN--ERFIEVYVDCPLEVCRKRDP 118 (156)
T ss_dssp TTSEEEEE----SHHHHHHHHHHHHT--TEEEEEEEES-HHHHHHHTT
T ss_pred CCCeEEEeeccCchHHHHHHHHhCCc--CceEEEEeCCCHHHHHHhCc
Confidence 15556666532 223333333321 02357999999999999943
No 133
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.02 E-value=2.3e-09 Score=95.74 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=64.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc------ceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV------KHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEV 79 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (228)
.+..|+|+|+|||||||+|+.|++.++. .+++. |.+++.+.....+...-+.... ..+.......+
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~-D~vr~~l~ge~~f~~~er~~~~-------~~l~~~a~~v~ 462 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG-DVVRKHLSSELGFSKEDRDLNI-------LRIGFVASEIT 462 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC-cHHHHhccCCCCCCHHHHHHHH-------HHHHHHHHHHH
Confidence 4568999999999999999999999985 77877 4556655432222111111100 00111112222
Q ss_pred hccCCceEEcC-CCCC--HHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHh
Q psy6801 80 KDLKCNYLLDG-FPRT--YDQAMALFKNHLSPNCVMHINVPKEVIIDRLS 126 (228)
Q Consensus 80 ~~~~~~~ildg-~p~~--~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~ 126 (228)
.. +.++|+|. +|.. +.....+... ...-.+|||++|.+++.+|..
T Consensus 463 ~~-Gg~vI~~~~~p~~~~R~~nr~llk~-~g~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 463 KN-GGIAICAPIAPYRATRREVREMIEA-YGGFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred hC-CCEEEEEeCCchHHHHHHHHHHHhh-cCCEEEEEEcCCHHHHHHhcc
Confidence 22 77777775 4433 2222223222 111248999999999999963
No 134
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.00 E-value=3e-09 Score=88.86 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=29.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC------cceeehhHHHH
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFN------VKHIATGDILR 43 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~------~~~i~~~d~~~ 43 (228)
.+++|+|||||||+++.|++.+. +.+++.||++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 68999999999999999998875 35899999883
No 135
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.99 E-value=7.4e-09 Score=79.75 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=61.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh---C--cceeehhHHHHHHHhccChhhHHH-HHHHHCCCCCChHHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF---N--VKHIATGDILRSHIAQNTTLGLKA-KEYMNKGLLVPDDLMIDLVKNEV 79 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~---~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 79 (228)
.+..|+|+|++||||||+++.|+..+ + ..+++.| .+++.+.....+...- .... ..+.......+
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 87 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKDLGFSEEDRKENI--------RRIGEVAKLFV 87 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhccccCCCHHHHHHHH--------HHHHHHHHHHH
Confidence 46789999999999999999999987 2 4556654 4454433221111000 0000 00111112222
Q ss_pred hccCCceEEcCCCCCHHHHHHHHhcCC-CCCEEEEEEeCHHHHHHH
Q psy6801 80 KDLKCNYLLDGFPRTYDQAMALFKNHL-SPNCVMHINVPKEVIIDR 124 (228)
Q Consensus 80 ~~~~~~~ildg~p~~~~~~~~l~~~~~-~~~~vi~l~~~~e~~~~R 124 (228)
.. +..+|+|.......+...+..... .+-.+|||++|.+++.+|
T Consensus 88 ~~-G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 88 RN-GIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred cC-CCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 22 777888873223333344433211 134689999999999988
No 136
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.98 E-value=2.5e-09 Score=84.68 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=28.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC-------cceeehhHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFN-------VKHIATGDIL 42 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~-------~~~i~~~d~~ 42 (228)
+|.|.|++||||||+|+.|+..+. +.+++.|++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 478999999999999999999883 3567777764
No 137
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.97 E-value=1.4e-08 Score=75.53 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=59.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---Cc--ceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHH--HHHHHhc
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF---NV--KHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDL--VKNEVKD 81 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~---~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ 81 (228)
.|+|+|+|||||||+|+.|++.+ +. .+++. |.++..+.....+... -....+..+ ....+.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~----------~~~~~~~~~~~~a~~l~~ 69 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRE----------DREENIRRIAEVAKLLAD 69 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcc----------hHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999998 53 44555 4445433221111000 001111111 1111221
Q ss_pred cCCceEEcCCCCCHHHHHHHHhc-CCCCCEEEEEEeCHHHHHHHHhc
Q psy6801 82 LKCNYLLDGFPRTYDQAMALFKN-HLSPNCVMHINVPKEVIIDRLSK 127 (228)
Q Consensus 82 ~~~~~ildg~p~~~~~~~~l~~~-~~~~~~vi~l~~~~e~~~~R~~~ 127 (228)
.+..+|+|..-........+... ...+-.++||++|.+++.+|..+
T Consensus 70 ~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 70 AGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 16677888632233333333322 11344689999999999999655
No 138
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.97 E-value=2.9e-08 Score=81.41 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=55.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhc--c-
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKD--L- 82 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~- 82 (228)
.+..|+|+|++||||||+++.|. ..|+.+++- + +...+..++...... .
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~--~-------------------------~~~L~~~l~~~~~~~~~~~ 56 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN--L-------------------------PPSLLPKLVELLAQSGGIR 56 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC--c-------------------------CHHHHHHHHHHHHhcCCCC
Confidence 34579999999999999999995 457766543 1 011111111111111 0
Q ss_pred CCceEEcCCCC-----CHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 83 KCNYLLDGFPR-----TYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 83 ~~~~ildg~p~-----~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.-.+++|.... .......+...+ ....+|||+++++++.+|+..+
T Consensus 57 ~~av~iD~r~~~~~~~~~~~~~~L~~~g-~~~~iI~L~a~~e~L~~Rl~~~ 106 (288)
T PRK05416 57 KVAVVIDVRSRPFFDDLPEALDELRERG-IDVRVLFLDASDEVLIRRYSET 106 (288)
T ss_pred CeEEEEccCchhhHHHHHHHHHHHHHcC-CcEEEEEEECCHHHHHHHHhhc
Confidence 22355665321 123344455442 2335799999999999999753
No 139
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.96 E-value=5.9e-08 Score=83.56 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=34.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcc-eeehhHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVK-HIATGDILRSHIA 47 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~-~i~~~d~~~~~~~ 47 (228)
.|.+|+|.|++||||||++..|+..+++. +++. |.+++.+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~t-D~iR~~lr 295 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVST-DAVREVLR 295 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeeh-hHHHHHHH
Confidence 47889999999999999999999999997 4566 66666443
No 140
>PLN02348 phosphoribulokinase
Probab=98.95 E-value=1.1e-09 Score=92.39 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=32.0
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc--------------------ceeehhHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV--------------------KHIATGDIL 42 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~--------------------~~i~~~d~~ 42 (228)
.+.+|.|.|++||||||+|+.|++.++. .+|++||+.
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 4678999999999999999999999862 478888875
No 141
>PHA03132 thymidine kinase; Provisional
Probab=98.94 E-value=8.6e-09 Score=91.07 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=65.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCC--CC-hHHH------------
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLL--VP-DDLM------------ 71 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~------------ 71 (228)
.+.|+|+|..||||||+++.|++.++..++-+.+=...-..-....++.+.+.+..+.. +. ...+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pfl 336 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPFR 336 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHH
Confidence 46799999999999999999999984433322110000000001234445444443211 11 1111
Q ss_pred --HHHHHHH---Hhc---c---CCceEEcCCCCCHHH-----------------HHHHHhcC-CCCCEEEEEEeCHHHHH
Q psy6801 72 --IDLVKNE---VKD---L---KCNYLLDGFPRTYDQ-----------------AMALFKNH-LSPNCVMHINVPKEVII 122 (228)
Q Consensus 72 --~~~~~~~---l~~---~---~~~~ildg~p~~~~~-----------------~~~l~~~~-~~~~~vi~l~~~~e~~~ 122 (228)
...+... ... . +..+|+|.++.+-.. ...+.... ..||++|||+++++++.
T Consensus 337 ~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~al 416 (580)
T PHA03132 337 ALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEENL 416 (580)
T ss_pred HHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHHH
Confidence 0111111 111 1 556777876533111 11222211 24899999999999999
Q ss_pred HHHhcC
Q psy6801 123 DRLSKR 128 (228)
Q Consensus 123 ~R~~~R 128 (228)
+|+.+|
T Consensus 417 kRIkkR 422 (580)
T PHA03132 417 RRVKKR 422 (580)
T ss_pred HHHHhc
Confidence 999999
No 142
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.92 E-value=2.3e-09 Score=83.30 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
+|.|.|++||||||+|+.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999996
No 143
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.91 E-value=2e-08 Score=76.28 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=60.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcc--eeehhHHHHHHHhccC----hh---------hHHHHHHHHCCCCCChHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVK--HIATGDILRSHIAQNT----TL---------GLKAKEYMNKGLLVPDDLMI 72 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~--~i~~~d~~~~~~~~~~----~~---------~~~~~~~~~~~~~~~~~~~~ 72 (228)
.+|++-|++.|||||+|+.|.+.+.-+ +++.|.++........ .+ +......+ ..+.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~ 73 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLY--------AAMH 73 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHH--------HHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHH--------HHHH
Confidence 479999999999999999999999765 5778776654222110 00 01110000 1112
Q ss_pred HHHHHHHhccCCceEEcCCCCCHHH-HHHHHh-cCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 73 DLVKNEVKDLKCNYLLDGFPRTYDQ-AMALFK-NHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 73 ~~~~~~l~~~~~~~ildg~p~~~~~-~~~l~~-~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
..+...... +..+|+|........ .+.+.. ....|-++|-+.||.+++.+|-..|
T Consensus 74 ~~iaa~a~a-G~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~R 130 (174)
T PF07931_consen 74 AAIAAMARA-GNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERAR 130 (174)
T ss_dssp HHHHHHHHT-T-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhc
Confidence 222222222 888999974333332 232312 1133557899999999999998888
No 144
>COG0645 Predicted kinase [General function prediction only]
Probab=98.91 E-value=1.5e-08 Score=75.39 Aligned_cols=115 Identities=21% Similarity=0.332 Sum_probs=71.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCCh---HHH---HHHHHHHHhc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD---DLM---IDLVKNEVKD 81 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~l~~ 81 (228)
..+++.|.|||||||+|+.|++.++..+|.. |.+++.+....... -...|.+.+. ..+ .......+..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrs-D~irk~L~g~p~~~-----r~~~g~ys~~~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRS-DVIRKRLFGVPEET-----RGPAGLYSPAATAAVYDELLGRAELLLSS 75 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEeh-HHHHHHhcCCcccc-----cCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 3588999999999999999999999999999 45566555411100 0001111111 111 1111222233
Q ss_pred cCCceEEcC-C--CCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCc
Q psy6801 82 LKCNYLLDG-F--PRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRW 129 (228)
Q Consensus 82 ~~~~~ildg-~--p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 129 (228)
+..+|+|+ | |..+.-+..+...-.-+-..|.+.+|.+++..|+..|+
T Consensus 76 -G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~ 125 (170)
T COG0645 76 -GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARK 125 (170)
T ss_pred -CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhC
Confidence 88999998 3 33333344444431223346999999999999999994
No 145
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.91 E-value=3.4e-08 Score=77.01 Aligned_cols=107 Identities=9% Similarity=0.094 Sum_probs=57.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHH--HHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLV--KNE 78 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (228)
.|..|+|+|++||||||+++.|+..+ +..+++.|++. ..+.....+ ...-....+..+. ...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~~~----------~~~~~~~~~~~l~~~a~~ 91 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDLGF----------SDADRKENIRRVGEVAKL 91 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcCCc----------CcccHHHHHHHHHHHHHH
Confidence 46789999999999999999999987 34566665543 322111000 0000011111111 111
Q ss_pred HhccCCceEEcCCCCC-HHHHHHHHhcCCCCCE-EEEEEeCHHHHHHH
Q psy6801 79 VKDLKCNYLLDGFPRT-YDQAMALFKNHLSPNC-VMHINVPKEVIIDR 124 (228)
Q Consensus 79 l~~~~~~~ildg~p~~-~~~~~~l~~~~~~~~~-vi~l~~~~e~~~~R 124 (228)
+.. ....|+.+|... ....+.+......-.+ +|||++|++++.+|
T Consensus 92 ~~~-~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 92 MVD-AGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred Hhh-CCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence 111 223444555432 2333333332111234 79999999999999
No 146
>COG4639 Predicted kinase [General function prediction only]
Probab=98.89 E-value=5.9e-08 Score=71.09 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=69.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCceE
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNYL 87 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 87 (228)
..++++|++||||||+++... .....++++++-+. ..... ++ .........--+.....+..++.+ ++..|
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~-lg~~~--~~---e~sqk~~~~~~~~l~~~l~qrl~~-Gk~ti 73 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLL-LGVSA--SK---ENSQKNDELVWDILYKQLEQRLRR-GKFTI 73 (168)
T ss_pred eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHH-hhhch--hh---hhccccHHHHHHHHHHHHHHHHHc-CCeEE
Confidence 368999999999999999753 36678898776443 21000 00 000000000112344455555665 99999
Q ss_pred EcCCC---CCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 88 LDGFP---RTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 88 ldg~p---~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+|+.- .++.++..+...-.....+|+++.|.+.|.+|...|
T Consensus 74 idAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 74 IDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred EEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 99854 556666666655233446799999999999996644
No 147
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.88 E-value=2e-08 Score=79.11 Aligned_cols=165 Identities=18% Similarity=0.267 Sum_probs=83.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHHHHhc---------cChhhHHHHHHHHCCCCCChHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRSHIAQ---------NTTLGLKAKEYMNKGLLVPDDLMI 72 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 72 (228)
..+|++.|.|+.|||++|++|+..+ +..+++++++-|+.... ..+.+..+++.+. .. ..
T Consensus 12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a------~~-~l 84 (222)
T PF01591_consen 12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA------KE-AL 84 (222)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH------HH-HH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH------HH-HH
Confidence 4689999999999999999999776 33689999988887654 1222222222221 11 12
Q ss_pred HHHHHHHhcc-CCceEEcCCCCCHHHHHHHHhcCCC-CCEEEEEE--eCH-HHHHHHHhcCccCCCCCcccccCCCCCCC
Q psy6801 73 DLVKNEVKDL-KCNYLLDGFPRTYDQAMALFKNHLS-PNCVMHIN--VPK-EVIIDRLSKRWIHPASGRVYNLDFNAPKK 147 (228)
Q Consensus 73 ~~~~~~l~~~-~~~~ildg~p~~~~~~~~l~~~~~~-~~~vi~l~--~~~-e~~~~R~~~R~~~~~~g~~~~~~~~~p~~ 147 (228)
.-+...+... +...|+|+--.+....+.+...... .-.++|++ |++ +.+.+.+...... .-.|.
T Consensus 85 ~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~---spDY~-------- 153 (222)
T PF01591_consen 85 EDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQN---SPDYK-------- 153 (222)
T ss_dssp HHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTT---SGGGT--------
T ss_pred HHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcC---Ccccc--------
Confidence 2233445533 7778999977775555444332000 12355555 555 4555555554221 01110
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhh-CCcEEEEeCCC
Q psy6801 148 PGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDN-REVLDTFTGNT 200 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~i~id~~~ 200 (228)
+ .......+.+.+|+..|...++++.+..++ -..+-.+|...
T Consensus 154 -~----------~~~e~A~~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~g~ 196 (222)
T PF01591_consen 154 -G----------MDPEEAIEDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINVGE 196 (222)
T ss_dssp -T----------S-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTT
T ss_pred -c----------CCHHHHHHHHHHHHHhhcccccccccccccCceEEEEEcCCc
Confidence 0 011224567788999999999998733222 22455566433
No 148
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.88 E-value=9.5e-08 Score=77.27 Aligned_cols=98 Identities=22% Similarity=0.377 Sum_probs=57.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc----
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL---- 82 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 82 (228)
|.+|+|+|.+||||||..+.| +.+|+.+++ ++ |...+..++.......
T Consensus 1 m~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvD--Nl-------------------------P~~Ll~~l~~~~~~~~~~~~ 52 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRAL-EDLGYYCVD--NL-------------------------PPSLLPQLIELLAQSNSKIE 52 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHH-HhcCeeEEc--CC-------------------------cHHHHHHHHHHHHhcCCCCc
Confidence 357999999999999999999 667875554 33 2222232222211110
Q ss_pred CCceEEcCCC----CC-HHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhc-CccCCC
Q psy6801 83 KCNYLLDGFP----RT-YDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK-RWIHPA 133 (228)
Q Consensus 83 ~~~~ildg~p----~~-~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~-R~~~~~ 133 (228)
.-.+++|.-. .. ......+...+.. -.++||+++++++.+|... |+.+|.
T Consensus 53 ~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~-~~ilFLdA~d~~LirRy~eTRR~HPL 108 (284)
T PF03668_consen 53 KVAIVIDIRSREFFEDLFEALDELRKKGID-VRILFLDASDEVLIRRYSETRRRHPL 108 (284)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcCCc-eEEEEEECChHHHHHHHHhccCCCCC
Confidence 2235566421 11 2223334444222 2599999999999999877 544444
No 149
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=7.6e-08 Score=75.87 Aligned_cols=179 Identities=16% Similarity=0.218 Sum_probs=96.9
Q ss_pred cccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhcc------ChhhHHHHHHHH-CCCCCCh-------
Q psy6801 3 NTLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQN------TTLGLKAKEYMN-KGLLVPD------- 68 (228)
Q Consensus 3 ~~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~------- 68 (228)
+|+.|.+|+|-|+||.||||+|..||.++|+..+-..|.+|+.+-+- +.+....-.+.+ -+....+
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF 164 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGF 164 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhH
Confidence 45678999999999999999999999999997654447777765331 111111111111 0111111
Q ss_pred --------HHHHHHHHHHHhccCCceEEcC---CCCCHHHHHHHHhcCCCCCEEEEEEeC-HHHHHHHHhcCccCCCCCc
Q psy6801 69 --------DLMIDLVKNEVKDLKCNYLLDG---FPRTYDQAMALFKNHLSPNCVMHINVP-KEVIIDRLSKRWIHPASGR 136 (228)
Q Consensus 69 --------~~~~~~~~~~l~~~~~~~ildg---~p~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~g~ 136 (228)
--+..++...+.+ +..+|++| .|.-...- .+. ...+.++|-++ ++..+.|...|.. .+.
T Consensus 165 ~dqa~~V~~GI~~VI~RAi~e-G~~lIIEGvHlVPg~i~~~-~~~----~n~~~~~l~i~dee~Hr~RF~~R~~--~t~- 235 (299)
T COG2074 165 EDQASAVMVGIEAVIERAIEE-GEDLIIEGVHLVPGLIKEE-ALG----NNVFMFMLYIADEELHRERFYDRIR--YTH- 235 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHhc-CcceEEEeeeeccccccHh-hhc----cceEEEEEEeCCHHHHHHHHHHHHH--HHh-
Confidence 1133455566666 88999998 34322211 111 12345555554 4677888888822 110
Q ss_pred ccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCCcchHHHHHHHHhhcC
Q psy6801 137 VYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTTDEIWPRIYEHLNIRI 216 (228)
Q Consensus 137 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~e~v~~~i~~~l~~~~ 216 (228)
..+ .-....+++..|+..-+.+.+..++.+. =+|++..-++..+++.+.|....
T Consensus 236 ----------------------~~r---p~~Ryl~yf~EiR~I~Dyl~~~Are~gV-PvI~n~di~etv~~il~~i~~~~ 289 (299)
T COG2074 236 ----------------------ASR---PGGRYLEYFKEIRTIHDYLVERAREHGV-PVIENDDIDETVDRILEDIRKRT 289 (299)
T ss_pred ----------------------ccC---chhHHHHHHHHHHHHHHHHHHHHHhcCC-CeeccccHHHHHHHHHHHHHHHH
Confidence 001 1223344455555544555555555544 24444432666676666665443
No 150
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.84 E-value=3.3e-08 Score=89.94 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=62.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHH---HHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDL---VKN 77 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (228)
.+..|+++|.|||||||+|+.|++.+ ++.+++.|+ +|+.+.....+..... ...+..+ ...
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~~~~~~~~r----------~~~~~~l~~~a~~ 527 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRDLGFSDADR----------VENIRRVAEVARL 527 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCCCCCCHHHH----------HHHHHHHHHHHHH
Confidence 57789999999999999999999997 346677744 5554432211111100 0111111 111
Q ss_pred HHhccCCceEEcCCCCCHHHHHHHHhcCC-CCCEEEEEEeCHHHHHHHH
Q psy6801 78 EVKDLKCNYLLDGFPRTYDQAMALFKNHL-SPNCVMHINVPKEVIIDRL 125 (228)
Q Consensus 78 ~l~~~~~~~ildg~p~~~~~~~~l~~~~~-~~~~vi~l~~~~e~~~~R~ 125 (228)
.+.. +..+|+|...........+..... .+-.+|||++|.+.+.+|.
T Consensus 528 ~~~~-G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 528 MADA-GLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHhC-CCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence 1222 666777763222233333333211 1336899999999999993
No 151
>PRK15453 phosphoribulokinase; Provisional
Probab=98.81 E-value=5.8e-09 Score=84.36 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=32.5
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDILR 43 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~~ 43 (228)
..+++|+|.|.+||||||+|+.|++.++ ..+++.|++.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 3567999999999999999999998884 46788877654
No 152
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.79 E-value=1.2e-07 Score=69.98 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=93.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCc----ceeehhHHHHHHHhccChh---------------hHHHHHHHHCCCCCC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNV----KHIATGDILRSHIAQNTTL---------------GLKAKEYMNKGLLVP 67 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~----~~i~~~d~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 67 (228)
...|+++||+|+||-|+.......+.. .++.- -+-|.. .++.+- |...-.+...|..
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrR-vITRpa-~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~-- 80 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRR-VITRPA-DAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLS-- 80 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEE-EecccC-CCCcccccccCHHHHHHHhhcCceeEEehhcCcc--
Confidence 456999999999999999988888732 22210 011111 001000 0000011111110
Q ss_pred hHHHHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCC
Q psy6801 68 DDLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKK 147 (228)
Q Consensus 68 ~~~~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~ 147 (228)
.-+-..+..++.. +..+|+.|--...-++.... .--+++.+.++++++.+|+..|
T Consensus 81 -Ygip~eId~wl~~-G~vvl~NgSRa~Lp~arrry----~~Llvv~ita~p~VLaqRL~~R------------------- 135 (192)
T COG3709 81 -YGIPAEIDLWLAA-GDVVLVNGSRAVLPQARRRY----PQLLVVCITASPEVLAQRLAER------------------- 135 (192)
T ss_pred -ccCchhHHHHHhC-CCEEEEeccHhhhHHHHHhh----hcceeEEEecCHHHHHHHHHHh-------------------
Confidence 0011234455555 77777777433333333222 1125899999999999999999
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 148 PGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
..++.+.+..|+.+-.... ...+-+.+||++.. +...+++...|....
T Consensus 136 --------------GREs~eeI~aRL~R~a~~~-------~~~~dv~~idNsG~l~~ag~~ll~~l~~~~ 184 (192)
T COG3709 136 --------------GRESREEILARLARAARYT-------AGPGDVTTIDNSGELEDAGERLLALLHQDS 184 (192)
T ss_pred --------------ccCCHHHHHHHHHhhcccc-------cCCCCeEEEcCCCcHHHHHHHHHHHHHhhc
Confidence 2366778888876553221 12456899999999 999999988888554
No 153
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.79 E-value=1.8e-08 Score=78.59 Aligned_cols=119 Identities=18% Similarity=0.304 Sum_probs=62.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh---CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCC----ChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF---NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV----PDDLMIDLVKNE 78 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 78 (228)
.|..+++.|+|||||||++..+.+.+ ++.+|+.|++ +...+. ........-...... ...+...++...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~p~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a 89 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFHPD---YDELLKADPDEASELTQKEASRLAEKLIEYA 89 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGSTT---HHHHHHHHCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhccc---hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999987 6788999665 332211 111111000000000 011233344444
Q ss_pred HhccCCceEEcCCCCCHHH----HHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCcc
Q psy6801 79 VKDLKCNYLLDGFPRTYDQ----AMALFKNHLSPNCVMHINVPKEVIIDRLSKRWI 130 (228)
Q Consensus 79 l~~~~~~~ildg~p~~~~~----~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 130 (228)
+.. +..+|+|+--.+... .+.+...|.. -.++++.+|++....|+..|..
T Consensus 90 ~~~-~~nii~E~tl~~~~~~~~~~~~~k~~GY~-v~l~~v~~~~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 90 IEN-RYNIIFEGTLSNPSKLRKLIREAKAAGYK-VELYYVAVPPELSIERVRQRYE 143 (199)
T ss_dssp HHC-T--EEEE--TTSSHHHHHHHHHHHCTT-E-EEEEEE---HHHHHHHHHHHHH
T ss_pred HHc-CCCEEEecCCCChhHHHHHHHHHHcCCce-EEEEEEECCHHHHHHHHHHHHH
Confidence 444 888999984333222 2344444333 2478899999999999999843
No 154
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.79 E-value=5.8e-08 Score=79.29 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=28.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---CcceeehhHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF---NVKHIATGDIL 42 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~~d~~ 42 (228)
+|.|.|++||||||+++.|+..+ +..+++.|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 47899999999999999999887 45678887764
No 155
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.78 E-value=2.7e-08 Score=63.98 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=21.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+|+|+|++||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 156
>PRK05439 pantothenate kinase; Provisional
Probab=98.75 E-value=4.1e-08 Score=81.12 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=31.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC-------cceeehhHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN-------VKHIATGDILR 43 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~-------~~~i~~~d~~~ 43 (228)
.|.+|.|.|+|||||||+|+.|++.++ +.++++|+++.
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 467899999999999999999998663 45788888764
No 157
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.74 E-value=5.8e-08 Score=77.43 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=24.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
.+.+|.|.|++||||||+++.|+..+.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 466899999999999999999998874
No 158
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.74 E-value=2.7e-08 Score=76.32 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=31.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRS 44 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~ 44 (228)
+|+|.|++||||||+|+.|++.+ +..+|+.|++.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 48999999999999999999997 4578999998863
No 159
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.72 E-value=5.9e-08 Score=74.69 Aligned_cols=163 Identities=21% Similarity=0.320 Sum_probs=87.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCc----ceeehhHHHHHHHhccCh----hhHHHHHHHHCCCCCCh--------HH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNV----KHIATGDILRSHIAQNTT----LGLKAKEYMNKGLLVPD--------DL 70 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~----~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~ 70 (228)
+..|+|+||+||||||+++.|.+.+.- ++-.+..--+..-..+.+ ..+.+......|..+.- -.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 456999999999999999999998742 111111111100000000 00122222222221100 01
Q ss_pred HHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeC-HHHHHHHHhcCccCCCCCcccccCCCCCCCCC
Q psy6801 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVP-KEVIIDRLSKRWIHPASGRVYNLDFNAPKKPG 149 (228)
Q Consensus 71 ~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~ 149 (228)
....+...+.. ++.+|+|.-| .-+..+...+..| .+||+.++ .+.+.+|+..|
T Consensus 82 ~~~~i~~~~~~-gk~~il~~~~---~g~~~L~~~~~~~-~~IfI~~~s~~~l~~~l~~r--------------------- 135 (183)
T PF00625_consen 82 SKSAIDKVLEE-GKHCILDVDP---EGVKQLKKAGFNP-IVIFIKPPSPEVLKRRLRRR--------------------- 135 (183)
T ss_dssp EHHHHHHHHHT-TTEEEEEETH---HHHHHHHHCTTTE-EEEEEEESSHHHHHHHHHTT---------------------
T ss_pred ccchhhHhhhc-CCcEEEEccH---HHHHHHHhcccCc-eEEEEEccchHHHHHHHhcc---------------------
Confidence 12334444444 7788887543 3445555554444 67888766 57788887776
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 150 IDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
..+..+.+.+++..+.... +.+...+ .+|.+ .+ ++.+++|.+.|..
T Consensus 136 ------------~~~~~~~i~~r~~~~~~~~----~~~~~fd--~vi~n-~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 136 ------------GDESEEEIEERLERAEKEF----EHYNEFD--YVIVN-DDLEEAVKELKEIIEQ 182 (183)
T ss_dssp ------------THCHHHHHHHHHHHHHHHH----GGGGGSS--EEEEC-SSHHHHHHHHHHHHHH
T ss_pred ------------ccccHHHHHHHHHHHHHHH----hHhhcCC--EEEEC-cCHHHHHHHHHHHHHh
Confidence 2344556667776664332 2232222 23443 37 9999999998875
No 160
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.69 E-value=2.1e-08 Score=82.24 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=29.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC-------cceeehhHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN-------VKHIATGDIL 42 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~-------~~~i~~~d~~ 42 (228)
.|.+|.|.|++||||||+|+.|...+. +.+++.|++.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 467899999999999999998876663 4557777654
No 161
>PHA00729 NTP-binding motif containing protein
Probab=98.66 E-value=1.9e-07 Score=73.58 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=59.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcc--eeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVK--HIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-- 82 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 82 (228)
...|+|+|+||+||||+|..|+++++.. .+..++.... + ......++.+.+...+.......
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d---~-----------~~~~~fid~~~Ll~~L~~a~~~~~~ 82 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQ---Y-----------VQNSYFFELPDALEKIQDAIDNDYR 82 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHh---c-----------CCcEEEEEHHHHHHHHHHHHhcCCC
Confidence 3579999999999999999999987521 1222111000 0 00001122222333333333221
Q ss_pred CCceEEcCCCCCHH--------------HHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCc
Q psy6801 83 KCNYLLDGFPRTYD--------------QAMALFKNHLSPNCVMHINVPKEVIIDRLSKRW 129 (228)
Q Consensus 83 ~~~~ildg~p~~~~--------------~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 129 (228)
..-+|+|++..... ....+.. ..+.++++.++++.+.+++..|.
T Consensus 83 ~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrS---R~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 83 IPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRT---RVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred CCEEEEeCCchhhcccchhhhccchHHHHHHHHHh---hCcEEEEecCCHHHHHHHHHhCC
Confidence 22358887322111 2222322 27789999999999999999983
No 162
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.61 E-value=1.7e-07 Score=75.38 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=29.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDILR 43 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~~ 43 (228)
+|+|.|++||||||+++.|++.++ +.+|+.|++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 489999999999999999998873 46788877765
No 163
>PLN02165 adenylate isopentenyltransferase
Probab=98.58 E-value=6.3e-07 Score=74.47 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=32.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
.+.+|+|+||+||||||+|..|++.++..+++.|.+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 345899999999999999999999999999999776
No 164
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.58 E-value=3.1e-06 Score=67.14 Aligned_cols=143 Identities=18% Similarity=0.268 Sum_probs=82.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHH--HHhcc--C
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKN--EVKDL--K 83 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~--~ 83 (228)
.+|+|.|.+|||||+..+.| +.+|+.+++ ++ |...+-+.+.- ..... .
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvD--NL-------------------------Pp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVD--NL-------------------------PPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeec--CC-------------------------CHHHHHHHHHHHhhcccCCce
Confidence 46999999999999999988 667764443 33 22222222221 11111 3
Q ss_pred CceEEcC----CCCC-HHHHHHHHhcCCCCC-EEEEEEeCHHHHHHHHhc-CccCCCCCcccccCCCCCCCCCCCccccc
Q psy6801 84 CNYLLDG----FPRT-YDQAMALFKNHLSPN-CVMHINVPKEVIIDRLSK-RWIHPASGRVYNLDFNAPKKPGIDDITGE 156 (228)
Q Consensus 84 ~~~ildg----~p~~-~~~~~~l~~~~~~~~-~vi~l~~~~e~~~~R~~~-R~~~~~~g~~~~~~~~~p~~~~~~~~~~~ 156 (228)
-.+++|- |... ......+...+ ..+ .++||+++++++.+|... |+.+|.++.
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~~~-~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~-------------------- 112 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKDNG-DIDPRVLFLEADDETLVRRYSETRRSHPLSED-------------------- 112 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHhcC-CCCceEEEEECchhHHHHHHhhhhhcCCCCcc--------------------
Confidence 3466663 2222 22233444442 223 489999999999999876 555554331
Q ss_pred ccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCC-C-cchHHHHHHHHhh
Q psy6801 157 KLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNT-T-DEIWPRIYEHLNI 214 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~-~-e~v~~~i~~~l~~ 214 (228)
. .+.+-+..=++...++.+..+ .+||++. + .++.+.|...+..
T Consensus 113 -------~---~l~~~I~~ERelL~pLk~~A~-----~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 113 -------G---LLLEAIAKERELLAPLREIAD-----LVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred -------C---cHHHHHHHHHHHHHHHHHHhh-----hEeecccCCHHHHHHHHHHHHcc
Confidence 1 133334444444455554432 3677776 4 8888888888775
No 165
>PLN02772 guanylate kinase
Probab=98.57 E-value=5.9e-07 Score=76.05 Aligned_cols=165 Identities=17% Similarity=0.189 Sum_probs=84.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcc-eeehhHHHHHHHh---ccChh----hHHHHHHHHCCCCCCh--------HHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVK-HIATGDILRSHIA---QNTTL----GLKAKEYMNKGLLVPD--------DLM 71 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~-~i~~~d~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~--------~~~ 71 (228)
+.|+|+||+||||+|+.++|.+.+... .+.....-|..-. .+.++ .+.+...+..|..+.- -.-
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YGTs 215 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTS 215 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccccc
Confidence 479999999999999999998876221 1111011110000 00000 0112222222221111 011
Q ss_pred HHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCC
Q psy6801 72 IDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGID 151 (228)
Q Consensus 72 ~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~ 151 (228)
...+...+.+ ++.+|+|--+....+.. .....+-.++++..+.+++.+|+..|
T Consensus 216 k~~V~~vl~~-Gk~vILdLD~qGar~Lr---~~~l~~v~IFI~PPSlEeLe~RL~~R----------------------- 268 (398)
T PLN02772 216 IEAVEVVTDS-GKRCILDIDVQGARSVR---ASSLEAIFIFICPPSMEELEKRLRAR----------------------- 268 (398)
T ss_pred HHHHHHHHHh-CCcEEEeCCHHHHHHHH---HhcCCeEEEEEeCCCHHHHHHHHHhc-----------------------
Confidence 2333444444 88888886444333333 22233323334444579999999988
Q ss_pred cccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 152 DITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
....++.+++|+..+....... .+... .-..|.++ + ++.++++.+.|.
T Consensus 269 ----------GteseE~I~kRL~~A~~Ei~~~--~~~~~-fD~vIvND-dLe~A~~~L~~iL~ 317 (398)
T PLN02772 269 ----------GTETEEQIQKRLRNAEAELEQG--KSSGI-FDHILYND-NLEECYKNLKKLLG 317 (398)
T ss_pred ----------CCCCHHHHHHHHHHHHHHHhhc--cccCC-CCEEEECC-CHHHHHHHHHHHHh
Confidence 2335678889998875432110 11111 11234443 6 888888888875
No 166
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.44 E-value=9.9e-07 Score=78.13 Aligned_cols=36 Identities=14% Similarity=0.419 Sum_probs=30.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-CcceeehhHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-NVKHIATGDIL 42 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-~~~~i~~~d~~ 42 (228)
+.+|.|.|++||||||+++.|+..+ +...|++|++.
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 4689999999999999999999988 44678887763
No 167
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.39 E-value=3.4e-06 Score=64.68 Aligned_cols=113 Identities=17% Similarity=0.251 Sum_probs=58.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhcc-------ChhhHHHH--HH---HHCC-------CCCChH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQN-------TTLGLKAK--EY---MNKG-------LLVPDD 69 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~-------~~~~~~~~--~~---~~~~-------~~~~~~ 69 (228)
+|.|.|..|||++++|+.||+++|+++++- +++....... ..+.+... .. +..+ ......
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 589999999999999999999999999998 6665432210 00111111 11 1111 111122
Q ss_pred HHHHHHHHHHhcc--CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 70 LMIDLVKNEVKDL--KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 70 ~~~~~~~~~l~~~--~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.+.....+.+.+. ..++|+.|.. ..+-..+.+..+.|||.+|.+...+|+.+|
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~GR~------a~~il~~~~~~l~V~i~A~~~~Rv~ri~~~ 134 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIVGRC------ANYILRDIPNVLHVFIYAPLEFRVERIMER 134 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEESTT------HHHHTTT-TTEEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEecC------HhhhhCCCCCeEEEEEECCHHHHHHHHHHH
Confidence 2222222222222 5678887752 122222233457899999999999999998
No 168
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.29 E-value=2.7e-05 Score=57.56 Aligned_cols=111 Identities=12% Similarity=0.173 Sum_probs=60.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh--CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF--NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKC 84 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (228)
+...++.||.||||||+...+-..+ ++.+++.|.+.. .+.+..+....+...- .....+...+.. +.
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~-~i~p~~p~~~~i~A~r---------~ai~~i~~~I~~-~~ 70 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAA-QISPDNPTSAAIQAAR---------VAIDRIARLIDL-GR 70 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhh-hcCCCCchHHHHHHHH---------HHHHHHHHHHHc-CC
Confidence 3456788999999999877654444 567899966543 3444433322221111 112222333333 66
Q ss_pred ceEEcCC---CCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 85 NYLLDGF---PRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 85 ~~ildg~---p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
++..+.. +......+.-...|+...+.+++--+.|...+|+..|
T Consensus 71 ~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~R 117 (187)
T COG4185 71 PFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLR 117 (187)
T ss_pred CcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHH
Confidence 7777652 2223333334444444444444444557889999988
No 169
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.29 E-value=8.1e-07 Score=71.19 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=24.2
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..|.+|.|.|++|+||||+|..|++.+
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHH
Confidence 457899999999999999999998776
No 170
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=98.26 E-value=4.1e-06 Score=64.91 Aligned_cols=118 Identities=16% Similarity=0.250 Sum_probs=59.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHH-------------HHHHHCCCCCChHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKA-------------KEYMNKGLLVPDDLMID 73 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 73 (228)
|.+++|.||+|+|||.+|-.||+++|.++|+.|.+. -.-+-....++.. ...+.+|. ++.+....
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq-~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~ 78 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQ-CYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHE 78 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGG-G-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHH
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEeccee-cccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHH
Confidence 457899999999999999999999999999985542 1101011111111 12344454 45555666
Q ss_pred HHHHHHhcc--CCceEEcCCCCCHHHHHHHHhcCCC---CC-EEEEEEeCHH-HHHHHHhcC
Q psy6801 74 LVKNEVKDL--KCNYLLDGFPRTYDQAMALFKNHLS---PN-CVMHINVPKE-VIIDRLSKR 128 (228)
Q Consensus 74 ~~~~~l~~~--~~~~ildg~p~~~~~~~~l~~~~~~---~~-~vi~l~~~~e-~~~~R~~~R 128 (228)
.+...+.+. ..++|++|-..+ .++.+...... +. .+.++.++++ ....|..+|
T Consensus 79 ~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 79 RLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 667777666 788999985322 23333322121 11 3677787775 444555444
No 171
>KOG0635|consensus
Probab=98.26 E-value=3.4e-05 Score=56.50 Aligned_cols=117 Identities=16% Similarity=0.229 Sum_probs=69.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh----CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHH-HHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF----NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLV-KNEVK 80 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 80 (228)
.+..|+|.|.+||||||+|-.|.+.+ ...++--+|-+|..+..+-.+.+. +. .+.+.++= ..++.
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~--dR--------~ENIRRigeVaKLF 99 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAE--DR--------NENIRRIGEVAKLF 99 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchh--hh--------hhhHHHHHHHHHHH
Confidence 45689999999999999999998887 334554456667655433222110 00 01111110 11122
Q ss_pred ccCCceEE-----cCCCCCHHHHHHHHhcCCCCCE-EEEEEeCHHHHHHH--------HhcCccCCCCCc
Q psy6801 81 DLKCNYLL-----DGFPRTYDQAMALFKNHLSPNC-VMHINVPKEVIIDR--------LSKRWIHPASGR 136 (228)
Q Consensus 81 ~~~~~~il-----dg~p~~~~~~~~l~~~~~~~~~-vi~l~~~~e~~~~R--------~~~R~~~~~~g~ 136 (228)
. ..++|. .-|..+++++..+...+ ++ -||+++|.+++.+| .+...+..+||.
T Consensus 100 A-Dag~iciaSlISPYR~dRdacRel~~~~---~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTGI 165 (207)
T KOG0635|consen 100 A-DAGVICIASLISPYRKDRDACRELLPEG---DFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTGI 165 (207)
T ss_pred h-ccceeeeehhcCchhccHHHHHHhccCC---CeEEEEecCcHHHhhccCchhHHHHHhcccccccccC
Confidence 2 333332 33667788888887653 44 59999999987554 445556666664
No 172
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.23 E-value=1.1e-06 Score=72.85 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=33.0
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
+++++|+|+||+||||||+|..|++.++..+|+.|.+
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 3456899999999999999999999999999988774
No 173
>PHA03136 thymidine kinase; Provisional
Probab=98.23 E-value=6e-05 Score=63.48 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=21.5
Q ss_pred CCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 106 LSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 106 ~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
..||.+|||+++++++.+|+.+|
T Consensus 190 p~pD~IIyL~l~~e~~~~RI~kR 212 (378)
T PHA03136 190 PHGGNIVIMDLDECEHAERIIAR 212 (378)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHc
Confidence 45889999999999999999999
No 174
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.22 E-value=1.4e-06 Score=62.85 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=25.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|+|.||||+||||+++.+++.++.+++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 68999999999999999999999876544
No 175
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.20 E-value=0.00013 Score=57.81 Aligned_cols=184 Identities=13% Similarity=0.096 Sum_probs=92.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHH---HHHHhccChhhHHHHHHHHCCC--CCChHHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDIL---RSHIAQNTTLGLKAKEYMNKGL--LVPDDLMIDLVKNEVK 80 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ 80 (228)
.|.+|+|.|.+||||..+.+.|.+.++-.++.+-.+- ..+. ....+-......=..|. ......+...+..++.
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~-~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv~rv~ 108 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRER-TQWYFQRYVQHLPAAGEIVLFDRSWYNRAGVERVM 108 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH-cChHHHHHHHhCCCCCeEEEEeCchhhhHHHHHhc
Confidence 5789999999999999999999999966555441110 0000 00000000000000111 0111222222222221
Q ss_pred ccCCceEEcC-CCCCHHHHHHHHhc---CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccc
Q psy6801 81 DLKCNYLLDG-FPRTYDQAMALFKN---HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGE 156 (228)
Q Consensus 81 ~~~~~~ildg-~p~~~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~ 156 (228)
. .+-+. +..-..+...|+.. ....-+.+||.++.++-.+|+..|..+|.+. |
T Consensus 109 ~----~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~------------W-------- 164 (230)
T TIGR03707 109 G----FCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQ------------W-------- 164 (230)
T ss_pred C----CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccc------------c--------
Confidence 1 00000 11112333333322 1223357999999999999999995544321 1
Q ss_pred ccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhh-CCcEEEEeCCCCcchHHHHHHHHhhcCCC
Q psy6801 157 KLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDN-REVLDTFTGNTTDEIWPRIYEHLNIRIPP 218 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~i~id~~~~e~v~~~i~~~l~~~~~~ 218 (228)
+-....-...+++..|...++.+++.-.. ..-.++|++++...-.-.|.+.|...|..
T Consensus 165 ----k~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~i~~~l~~ 223 (230)
T TIGR03707 165 ----KLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDKKRARLNAIRHILSRLDY 223 (230)
T ss_pred ----cCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHhCCC
Confidence 11112223345678888888887776443 23478999998633333344444444433
No 176
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.16 E-value=2.3e-06 Score=65.03 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhC--cceeehhH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFN--VKHIATGD 40 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~--~~~i~~~d 40 (228)
++|+|.|+|||||||+|..|+..++ ..++.+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 4799999999999999999999987 34555543
No 177
>KOG3062|consensus
Probab=98.12 E-value=1.3e-05 Score=62.35 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=60.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCc-----ceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNV-----KHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKD 81 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (228)
|+.|+|+|-|+|||||.|..|.+.+.- .+.-.+|-- -.+...+.++ ..-....+...+...+.+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~----------~s~~EK~lRg~L~S~v~R 69 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYG----------DSQAEKALRGKLRSAVDR 69 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCccccc----------ccHHHHHHHHHHHHHHHh
Confidence 468999999999999999999888722 111111211 1111111111 111123344455555554
Q ss_pred c---CCceEEcC--CCCCHH-HHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 82 L---KCNYLLDG--FPRTYD-QAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 82 ~---~~~~ildg--~p~~~~-~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
. +..+|+|. |...++ ++--..+......+||+..+|.+.+.+--..|
T Consensus 70 ~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~ 122 (281)
T KOG3062|consen 70 SLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSER 122 (281)
T ss_pred hcccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccC
Confidence 4 67788885 222111 11111111122346999999999998886666
No 178
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.09 E-value=3.1e-06 Score=62.58 Aligned_cols=28 Identities=32% Similarity=0.614 Sum_probs=24.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
++++|+|+|+|||||||++.++++.+.-
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 3568999999999999999999988733
No 179
>PRK06761 hypothetical protein; Provisional
Probab=98.08 E-value=3.1e-06 Score=69.10 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=25.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCccee
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHI 36 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i 36 (228)
++.|+|+|+|||||||+++.|++.++...+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~ 32 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGI 32 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCce
Confidence 458999999999999999999999975433
No 180
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=98.08 E-value=8.3e-07 Score=48.93 Aligned_cols=35 Identities=46% Similarity=0.872 Sum_probs=30.1
Q ss_pred CccCCCCCcccccCCCCCCCCCCCcccccccccCC
Q psy6801 128 RWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRD 162 (228)
Q Consensus 128 R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~ 162 (228)
|++|+.+|+.||..|+||..+++++.||+.|.+|.
T Consensus 1 Rr~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR~ 35 (36)
T PF05191_consen 1 RRICPKCGRIYHIEFNPPKVEGVCDNCGGELVQRK 35 (36)
T ss_dssp EEEETTTTEEEETTTB--SSTTBCTTTTEBEBEEG
T ss_pred CcCcCCCCCccccccCCCCCCCccCCCCCeeEeCC
Confidence 46789999999999999999999999999998875
No 181
>KOG0730|consensus
Probab=98.07 E-value=3.1e-05 Score=68.80 Aligned_cols=32 Identities=19% Similarity=0.529 Sum_probs=28.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|+-|+++||||||||++|+.||..-++.++++
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 45699999999999999999999998888765
No 182
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.07 E-value=3.9e-05 Score=67.58 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=29.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
.|.-|++.||||+|||.+|+.+|..++++++.+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 355699999999999999999999999987765
No 183
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=98.04 E-value=0.00035 Score=56.58 Aligned_cols=169 Identities=9% Similarity=0.069 Sum_probs=93.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
.|.+|+|.|..||||..+.++|.+.++-.++.+-.+ ..+...... . . +....-..+-..|..
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~-------~~Pt~eE~~-----~-----p-~lWRfw~~lP~~G~i 116 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF-------KAPSAEELD-----H-----D-FLWRIHKALPERGEI 116 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC-------CCCCHHHHc-----C-----c-hHHHHHHhCCCCCeE
Confidence 578999999999999999999999996655544111 000000000 0 0 000011111111333
Q ss_pred eEEcC--C-----------------CCCHHHHHHHHhc---CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCC
Q psy6801 86 YLLDG--F-----------------PRTYDQAMALFKN---HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFN 143 (228)
Q Consensus 86 ~ildg--~-----------------p~~~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~ 143 (228)
.|+|+ | .....+...|+.. ....-+.+||.++.++-.+|+..|..++.+.
T Consensus 117 ~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~-------- 188 (264)
T TIGR03709 117 GIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKN-------- 188 (264)
T ss_pred EEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCccc--------
Confidence 34432 1 1112233333322 1122357999999999999999996554321
Q ss_pred CCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhh-CCcEEEEeCCCC----cchHHHHHHHHhhcC
Q psy6801 144 APKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDN-REVLDTFTGNTT----DEIWPRIYEHLNIRI 216 (228)
Q Consensus 144 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~i~id~~~~----e~v~~~i~~~l~~~~ 216 (228)
.+-....-...+++..|...++.++..-.. ..-.++|++++. -.|.+.|.+.|+..-
T Consensus 189 ----------------Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~~~ 250 (264)
T TIGR03709 189 ----------------WKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALESLD 250 (264)
T ss_pred ----------------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 011112233445688888888887776443 334789999986 335555555555443
No 184
>KOG4235|consensus
Probab=98.04 E-value=0.00027 Score=54.01 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=23.2
Q ss_pred CCCCEEEEEEeCHHHHHHHHhcCccC
Q psy6801 106 LSPNCVMHINVPKEVIIDRLSKRWIH 131 (228)
Q Consensus 106 ~~~~~vi~l~~~~e~~~~R~~~R~~~ 131 (228)
+.+|.+|||.+++++|.+|+..|...
T Consensus 152 v~~dgiIYLrasPetc~~Ri~~R~R~ 177 (244)
T KOG4235|consen 152 VSLDGIIYLRASPETCYKRIYLRARE 177 (244)
T ss_pred cccceEEEeecChHHHHHHHHHHhhh
Confidence 66999999999999999999999443
No 185
>KOG0738|consensus
Probab=98.02 E-value=6.5e-05 Score=63.13 Aligned_cols=30 Identities=17% Similarity=0.454 Sum_probs=28.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
-|++.||||+|||-+|+.++.+.+..+|++
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 489999999999999999999999999876
No 186
>PF13173 AAA_14: AAA domain
Probab=98.01 E-value=7.2e-05 Score=54.00 Aligned_cols=95 Identities=20% Similarity=0.305 Sum_probs=58.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhC----cceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccC
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFN----VKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLK 83 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (228)
+.++|.||.||||||+++.+++.+. +.+++.++.-..... . .+ ....+.+......
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--------------~----~~--~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--------------D----PD--LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--------------h----hh--hHHHHHHhhccCC
Confidence 4689999999999999999998875 667777665332110 0 00 1122222211114
Q ss_pred CceEEcC---CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHH
Q psy6801 84 CNYLLDG---FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDR 124 (228)
Q Consensus 84 ~~~ildg---~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R 124 (228)
..+++|- .|......+.+.+.+ ++..|+++.+......+
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~--~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNG--PNIKIILTGSSSSLLSK 104 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhc--cCceEEEEccchHHHhh
Confidence 5577786 455455566665542 67788888887666544
No 187
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.01 E-value=4.2e-06 Score=63.02 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=24.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHI 46 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~ 46 (228)
+|+|+|++||||||+++.|++. |++++ .+..+..+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~ 35 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREII 35 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHH
Confidence 6999999999999999999998 88877 35555544
No 188
>KOG0733|consensus
Probab=98.00 E-value=4.6e-05 Score=67.37 Aligned_cols=117 Identities=18% Similarity=0.295 Sum_probs=68.5
Q ss_pred ccce-EEEEcCCCCChHHHHHHHHHHhCcceeeh--hHHHHHHHhccChhhHHHHHHHHCCCCC----------------
Q psy6801 6 LMLK-AVIIGAPGCGKGTISSRIIDHFNVKHIAT--GDILRSHIAQNTTLGLKAKEYMNKGLLV---------------- 66 (228)
Q Consensus 6 ~~~~-i~i~G~~GsGKTt~a~~L~~~~~~~~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 66 (228)
.|++ |++-||||||||.+|+.+|.++++++++. ..++.-. .-+..+.+++.+..-...
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv---SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pk 297 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV---SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPK 297 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc---CcccHHHHHHHHHHHhccCCeEEEeecccccccc
Confidence 4444 89999999999999999999999999865 2222111 112233444433321100
Q ss_pred ----Ch---HHHHHHHHHHHhcc------CCceEEcC---CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 67 ----PD---DLMIDLVKNEVKDL------KCNYLLDG---FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 67 ----~~---~~~~~~~~~~l~~~------~~~~ildg---~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.. ..++..+..-+... +.++++-| -|-..+. +|... ..+|.-|.|.+|.+..++++.+-
T Consensus 298 Re~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp--aLRRa-GRFdrEI~l~vP~e~aR~~IL~~ 372 (802)
T KOG0733|consen 298 REEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP--ALRRA-GRFDREICLGVPSETAREEILRI 372 (802)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH--HHhcc-ccccceeeecCCchHHHHHHHHH
Confidence 00 11222233333333 46666644 4554443 34444 66888999999999887776653
No 189
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.99 E-value=3.1e-05 Score=71.04 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=29.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc-----ceeehhHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV-----KHIATGDILR 43 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~-----~~i~~~d~~~ 43 (228)
....|++.|.||+||||+++.|++.++. .++..+.+-+
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr 256 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRR 256 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHh
Confidence 4458999999999999999999999844 4455544433
No 190
>PLN02840 tRNA dimethylallyltransferase
Probab=97.98 E-value=6.2e-06 Score=70.72 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=31.7
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGD 40 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d 40 (228)
..++.|+|.||+||||||++..|++.++..+|+.|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 345689999999999999999999999988888765
No 191
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.97 E-value=7.7e-06 Score=64.19 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCccee
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHI 36 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i 36 (228)
..++++||||+||||+|+.+|++++..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 36899999999999999999999987654
No 192
>PRK09169 hypothetical protein; Validated
Probab=97.95 E-value=0.00021 Score=71.13 Aligned_cols=108 Identities=11% Similarity=0.024 Sum_probs=74.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCce
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
...|+++|++|+||||+++.|++.++..+++.|..+.+. .+..|..++.... ...+.-...+.+.+. ...
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr---~~v 2179 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR---WEV 2179 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc---CCe
Confidence 346899999999999999999999999999998887665 4455555555322 444444455555442 334
Q ss_pred EE--cCC-CCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 87 LL--DGF-PRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 87 il--dg~-p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
|+ +|+ +........+... .++||+..+.+++.+|+.+.
T Consensus 2180 VLSTGGGav~~~enr~~L~~~----GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2180 VLPAEGFGAAVEQARQALGAK----GLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred EEeCCCCcccCHHHHHHHHHC----CEEEEEECCHHHHHHHhccC
Confidence 44 233 3333334445444 57999999999999998766
No 193
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=9.1e-05 Score=63.62 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=49.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh----C--cceeehhHHHHHHHhccChhhHHHHHHHHC-CCCCChHHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF----N--VKHIATGDILRSHIAQNTTLGLKAKEYMNK-GLLVPDDLMIDLVKNEV 79 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~----~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 79 (228)
+.+++|+||+||||||++..|+..+ | +.+++. |..|.... ..+..+... +..+........+...+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~-Dt~R~aA~------eQLk~yAe~lgvp~~~~~~~~~l~~~l 295 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT-DNYRIAAI------EQLKRYADTMGMPFYPVKDIKKFKETL 295 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc-cchhhhHH------HHHHHHHHhcCCCeeehHHHHHHHHHH
Confidence 4579999999999999999999765 2 334555 44443211 112222222 22111111122233333
Q ss_pred hcc-CCceEEc--CC-CCCHHHHHHHHh
Q psy6801 80 KDL-KCNYLLD--GF-PRTYDQAMALFK 103 (228)
Q Consensus 80 ~~~-~~~~ild--g~-p~~~~~~~~l~~ 103 (228)
... ...+|+| |+ +++..++..+..
T Consensus 296 ~~~~~D~VLIDTaGr~~rd~~~l~eL~~ 323 (432)
T PRK12724 296 ARDGSELILIDTAGYSHRNLEQLERMQS 323 (432)
T ss_pred HhCCCCEEEEeCCCCCccCHHHHHHHHH
Confidence 322 5668899 65 366777776654
No 194
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.92 E-value=1e-05 Score=66.32 Aligned_cols=33 Identities=18% Similarity=0.421 Sum_probs=30.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
+|+|+||+|||||+++..|++.++..+|++|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 489999999999999999999999999999774
No 195
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.90 E-value=0.00039 Score=61.06 Aligned_cols=183 Identities=12% Similarity=0.100 Sum_probs=93.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHH-HHhccChh-hHHHHHHHHCCC--CCChHHHHHHHHHHHhc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRS-HIAQNTTL-GLKAKEYMNKGL--LVPDDLMIDLVKNEVKD 81 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~-~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 81 (228)
.+.+|+|.|..||||+++.++|.+.++-..+.+-.+-.. ......++ -......=..|. ......+..++..++..
T Consensus 39 ~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~~~~flwRfw~~lP~~G~I~IFdRSWY~~vlverv~g 118 (493)
T TIGR03708 39 FPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERERPPMWRFWRRLPPKGKIGIFFGSWYTRPLIERLEG 118 (493)
T ss_pred CeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHhcCcHHHHHHHhCCCCCeEEEEcCcccchhhHHHhcC
Confidence 577899999999999999999999996544443111000 00000000 000000000010 00111222222222111
Q ss_pred cCCceEEcC-CCCCHHHHHHHHhc---CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccc
Q psy6801 82 LKCNYLLDG-FPRTYDQAMALFKN---HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEK 157 (228)
Q Consensus 82 ~~~~~ildg-~p~~~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~ 157 (228)
.+-+. +..-..+...|+.. ....-+.+||.++.++-.+|+..|..+|... |
T Consensus 119 ----~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~------------W--------- 173 (493)
T TIGR03708 119 ----RIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETR------------W--------- 173 (493)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccc------------c---------
Confidence 00000 11112233333322 1222357999999999999999996544321 0
Q ss_pred cccCCCCcHHHHHHHHHHHHhcHHHHHHHhhh-CCcEEEEeCCCC----cchHHHHHHHHhhcC
Q psy6801 158 LIQRDDDKPEAIKKRLETFDQTIKPLLDYYDN-REVLDTFTGNTT----DEIWPRIYEHLNIRI 216 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~i~id~~~~----e~v~~~i~~~l~~~~ 216 (228)
+-....-...++...|...++.++..-.. ..-.++|++++. =.|.+.|.+.|...+
T Consensus 174 ---K~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~~l 234 (493)
T TIGR03708 174 ---RVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRARL 234 (493)
T ss_pred ---CCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11112223345688888888887776442 234789999985 446666667776665
No 196
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.90 E-value=1.2e-05 Score=68.69 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=31.0
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATG 39 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~ 39 (228)
.|..|+++||||||||++|+.|++.++.+++.++
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 4578999999999999999999999999888775
No 197
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=1.4e-05 Score=65.74 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=33.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
.+..|+|+||.+||||.+|-.||+++|..+|++|.+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 467899999999999999999999999999999664
No 198
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.87 E-value=9.5e-05 Score=59.14 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=31.6
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.|..|++.||||+|||-+|+.||.+.+.+++.+
T Consensus 149 WAPknVLFyGppGTGKTm~Akalane~kvp~l~v 182 (368)
T COG1223 149 WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLV 182 (368)
T ss_pred cCcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence 6788999999999999999999999999988775
No 199
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.87 E-value=0.00026 Score=52.48 Aligned_cols=30 Identities=23% Similarity=0.517 Sum_probs=27.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcce
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKH 35 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~ 35 (228)
++++|+|.|+-.|||||++++||+.+|.+.
T Consensus 7 F~K~VailG~ESsGKStLv~kLA~~fnt~~ 36 (187)
T COG3172 7 FVKTVAILGGESSGKSTLVNKLANIFNTTS 36 (187)
T ss_pred hheeeeeecCcccChHHHHHHHHHHhCCCc
Confidence 467899999999999999999999998744
No 200
>PRK14974 cell division protein FtsY; Provisional
Probab=97.87 E-value=7.8e-05 Score=62.59 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
|.+|+|+|++||||||++..|+..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999888888776
No 201
>KOG0744|consensus
Probab=97.87 E-value=0.00015 Score=59.71 Aligned_cols=27 Identities=19% Similarity=0.528 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVK 34 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~ 34 (228)
..|++-||||+|||++|+.||+++.+.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheee
Confidence 468999999999999999999998543
No 202
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.85 E-value=2.4e-05 Score=61.40 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=32.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcce-eehhHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKH-IATGDILRSHIA 47 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~-i~~~d~~~~~~~ 47 (228)
++|+|+|.|||||||+|+.+.+. +.++ +++.+-++..+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence 47999999999999999999665 5555 999998888754
No 203
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.85 E-value=1.5e-05 Score=68.31 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=30.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGD 40 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d 40 (228)
|..|+|+|||||||||+|+.|++.++.+++.++.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 5789999999999999999999999998887743
No 204
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.83 E-value=2e-05 Score=57.64 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=25.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
|++.|+||+|||++++.+++.++.+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence 7899999999999999999999887653
No 205
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.81 E-value=1.7e-05 Score=57.04 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVK 34 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~ 34 (228)
+..++|.|||||||||+++.|+..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3478999999999999999999998654
No 206
>PLN02748 tRNA dimethylallyltransferase
Probab=97.80 E-value=1.9e-05 Score=68.77 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=32.0
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGD 40 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d 40 (228)
.+.+|+|+||+|||||++|..|++.++..+|+.|.
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 45689999999999999999999999999999965
No 207
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.80 E-value=8.4e-05 Score=58.98 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=50.1
Q ss_pred EEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCcHHHH--HHHHHHHHhcHHHHHHHh
Q psy6801 110 CVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAI--KKRLETFDQTIKPLLDYY 187 (228)
Q Consensus 110 ~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~ 187 (228)
+.+||.++.++-.+|+..|..+|.+.= .-++..+ .+++..|...++.+++.-
T Consensus 138 iKfflhIsk~eQ~kRl~~~~~~p~~~w--------------------------kv~~~D~~~~~~yd~y~~a~~~~l~~T 191 (228)
T PF03976_consen 138 IKFFLHISKKEQKKRLKEREEDPLKRW--------------------------KVSPEDWEQRKHYDRYQKAYEEMLERT 191 (228)
T ss_dssp EEEEEE--HHHHHHHHHHHHHSCCCGG--------------------------G--HHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHHHHHHHHhcCccccc--------------------------cCCHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 579999999999999999965544321 1123333 345788888888877754
Q ss_pred hh-CCcEEEEeCCCC----cchHHHHHHHHhhcC
Q psy6801 188 DN-REVLDTFTGNTT----DEIWPRIYEHLNIRI 216 (228)
Q Consensus 188 ~~-~~~~i~id~~~~----e~v~~~i~~~l~~~~ 216 (228)
.. ..-.++|++++. -.|.+.|.+.|+..+
T Consensus 192 ~t~~APW~iI~a~dk~~a~l~v~~~l~~~le~~~ 225 (228)
T PF03976_consen 192 DTPYAPWHIIPADDKRYARLAVARTLLDALEKAL 225 (228)
T ss_dssp -BSSS-EEEEE-SSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCeEEEeCCCHHHHHHHHHHHHHHHhHhhc
Confidence 43 334789999985 446666666666543
No 208
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.78 E-value=0.00023 Score=53.11 Aligned_cols=32 Identities=31% Similarity=0.559 Sum_probs=28.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC-cceeehhHH
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFN-VKHIATGDI 41 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~-~~~i~~~d~ 41 (228)
++=++.+||||||+|..|++-|+ +.|+.-|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 45578999999999999999999 999888776
No 209
>PRK06620 hypothetical protein; Validated
Probab=97.77 E-value=0.0001 Score=58.20 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
..++|+||+|||||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 358999999999999999999988875555
No 210
>KOG0707|consensus
Probab=97.74 E-value=0.00036 Score=54.72 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
.-|+++||.|+||+|+.++|.++++.
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~ 63 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGG 63 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCC
Confidence 45999999999999999999999964
No 211
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.72 E-value=0.00014 Score=52.36 Aligned_cols=107 Identities=17% Similarity=0.102 Sum_probs=51.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh--------CcceeehhHHHHHHHhccChhhHHHHHHHHCCCC--CChHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF--------NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLL--VPDDLMIDLVKN 77 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~--------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 77 (228)
..++|.|++|+|||++++.+++.+ +..++.+.-- ... ....+...+...+..... .......+.+.+
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP--SSR-TPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH--HHS-SHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC--CCC-CHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 468999999999999999999987 4444432111 000 111222333333332211 233444466666
Q ss_pred HHhcc-CCceEEcCCCC--CHHHHHHHHhcCCCCCEEEEEEeC
Q psy6801 78 EVKDL-KCNYLLDGFPR--TYDQAMALFKNHLSPNCVMHINVP 117 (228)
Q Consensus 78 ~l~~~-~~~~ildg~p~--~~~~~~~l~~~~~~~~~vi~l~~~ 117 (228)
.+... ...+|+|.+-. .......+....-...+.+.|...
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~ 124 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGT 124 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEES
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEEC
Confidence 66653 22467787311 233333343332234454444443
No 212
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00013 Score=61.60 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
...+++||||+||||+|+.|+..++..+..+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 3578999999999999999999998877654
No 213
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.72 E-value=3.4e-05 Score=66.37 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=28.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
.+.+|+|.|++||||||+++.|++.+|...+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 45689999999999999999999999986543
No 214
>PHA03135 thymidine kinase; Provisional
Probab=97.71 E-value=0.0018 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.+|.|.|+.|+||||+++.|++.
T Consensus 11 ~rIYlDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 11 IRVYLDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999885
No 215
>PRK09087 hypothetical protein; Validated
Probab=97.70 E-value=4.4e-05 Score=60.70 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDIL 42 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~ 42 (228)
+.++|.|++|||||++++.+++..+..+++.+++.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~ 79 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG 79 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence 35899999999999999999999998899885443
No 216
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.70 E-value=0.00011 Score=63.95 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=27.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh---C--cceeehh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF---N--VKHIATG 39 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~---~--~~~i~~~ 39 (228)
.|.+|+|+|++||||||++..||..+ | +.+++.|
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 36689999999999999999999877 2 3445653
No 217
>KOG0731|consensus
Probab=97.69 E-value=0.00034 Score=63.91 Aligned_cols=119 Identities=10% Similarity=0.140 Sum_probs=66.7
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeeh--hHHHHHHHhccChhhHHHHHHHH---------------------
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT--GDILRSHIAQNTTLGLKAKEYMN--------------------- 61 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~--~d~~~~~~~~~~~~~~~~~~~~~--------------------- 61 (228)
..|.=++++||||+|||-+|+.+|-+=|+|++++ .+++.-....+ ...+++.+.
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~---asrvr~lf~~ar~~aP~iifideida~~~~ 418 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG---ASRVRDLFPLARKNAPSIIFIDEIDAVGRK 418 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc---hHHHHHHHHHhhccCCeEEEeccccccccc
Confidence 4566799999999999999999999999999866 23322222111 011111111
Q ss_pred ------CCCCCChHHHHHHHHHHHhcc--CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHh
Q psy6801 62 ------KGLLVPDDLMIDLVKNEVKDL--KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLS 126 (228)
Q Consensus 62 ------~~~~~~~~~~~~~~~~~l~~~--~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~ 126 (228)
.+..-..+.....+.-.++-. +.++|+.+--.-.+.+..-......+|..|+++.|+..-...+-
T Consensus 419 r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~ 491 (774)
T KOG0731|consen 419 RGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASIL 491 (774)
T ss_pred ccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHH
Confidence 011112233444444445554 66677765322222222222223558889999999866544443
No 218
>PRK10867 signal recognition particle protein; Provisional
Probab=97.68 E-value=0.00023 Score=61.72 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=26.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh----C--cceeehh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF----N--VKHIATG 39 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~----~--~~~i~~~ 39 (228)
|.+|+++|++||||||++..||..+ | +.+++.|
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 5689999999999999888887755 3 3457774
No 219
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.68 E-value=4.3e-05 Score=58.01 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.2
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
+.++++.|+|++||||||++++|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3455899999999999999999988774
No 220
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.68 E-value=0.00022 Score=61.66 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=26.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh---C--cceeehh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF---N--VKHIATG 39 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~---~--~~~i~~~ 39 (228)
|.+|+++|++||||||++..||..+ | +..++.|
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 5689999999999999999999877 3 3456663
No 221
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.68 E-value=5.2e-05 Score=62.55 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=30.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
.+++|+|+||+|||||.+|-.||++ +..+||.|.+
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 4568999999999999999999999 4588988664
No 222
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.66 E-value=3.7e-05 Score=56.27 Aligned_cols=23 Identities=35% Similarity=0.777 Sum_probs=21.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
|+|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999999864
No 223
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.65 E-value=3.9e-05 Score=64.51 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=24.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
..+++|.|||||||||+|+.|++.++.
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356899999999999999999999865
No 224
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.63 E-value=3.9e-05 Score=61.48 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=18.8
Q ss_pred EEcCCCCChHHHHHHHHHHhC
Q psy6801 12 IIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 12 i~G~~GsGKTt~a~~L~~~~~ 32 (228)
|+||+||||||+++.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999883
No 225
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.63 E-value=4.3e-05 Score=55.96 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
|++|.++|++|||||||+++|...
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC
Confidence 568999999999999999999664
No 226
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.62 E-value=5.5e-05 Score=63.69 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=31.3
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCccee--ehhHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHI--ATGDIL 42 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i--~~~d~~ 42 (228)
..|+.+.|.||||+|||.+|+.+++++|+.+| +..+++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~ 185 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE 185 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence 34678999999999999999999999999765 444443
No 227
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.62 E-value=5.2e-05 Score=63.08 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=28.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
...|+|.|+||+||||+++.|++.++.+++.+
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence 34699999999999999999999999987633
No 228
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.62 E-value=5.3e-05 Score=58.92 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=27.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGD 40 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d 40 (228)
|.+|++.||+|+||||.+.+||.++ .+.+++.|.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 6789999999999999999999887 345666643
No 229
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.61 E-value=0.0003 Score=61.02 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=26.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh----C--cceeehh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF----N--VKHIATG 39 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~----~--~~~i~~~ 39 (228)
|.+|++.|++||||||++..||..+ | +.+++.|
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 5689999999999999998888774 2 3457774
No 230
>PLN02796 D-glycerate 3-kinase
Probab=97.61 E-value=5.4e-05 Score=63.38 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=30.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDIL 42 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~ 42 (228)
.|.+|.|.|++||||||+++.|...+. ...++.|++.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 467899999999999999999998884 3456776664
No 231
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.61 E-value=0.00026 Score=65.86 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=28.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-|++.||||||||++|+.++..++..++.+
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 44589999999999999999999998887754
No 232
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00071 Score=60.09 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=28.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+..+++.||||+|||.+|+.++...+.+++++
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v 307 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISV 307 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence 44699999999999999999999888887765
No 233
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.59 E-value=0.00026 Score=57.87 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=26.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh---C--cceeehh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF---N--VKHIATG 39 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~---~--~~~i~~~ 39 (228)
+.+|+++|++|+||||++..||..+ | +.+++.|
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4678999999999999999998877 3 3446664
No 234
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.59 E-value=6.9e-05 Score=62.85 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=28.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
+.+|+|.|++||||||+++.|++.++.+++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 5689999999999999999999999998754
No 235
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.58 E-value=7.7e-05 Score=54.09 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=25.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVK 34 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~ 34 (228)
..+|++.|+.||||||+++.+++.++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3589999999999999999999999863
No 236
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.56 E-value=6.3e-05 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
|+|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999988653
No 237
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.55 E-value=9e-05 Score=56.18 Aligned_cols=23 Identities=35% Similarity=0.743 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+|+|+|+||+||||+.+++.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 238
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.54 E-value=0.0032 Score=46.68 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=64.8
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhCcce--eehhHHHHHHHhcc-ChhhHH--HHH-HHHCCCC----CChHHHHH
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFNVKH--IATGDILRSHIAQN-TTLGLK--AKE-YMNKGLL----VPDDLMID 73 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~--i~~~d~~~~~~~~~-~~~~~~--~~~-~~~~~~~----~~~~~~~~ 73 (228)
+....+|++-|.+.||||++|..+.+.+.-++ +-+ |.+.+.+.+. -..+.- ... ...+|.. -+..+...
T Consensus 20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigi-D~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~ 98 (205)
T COG3896 20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGI-DLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL 98 (205)
T ss_pred CCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhH-HHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence 33556899999999999999999988886554 455 3444443321 111100 000 0111110 01111111
Q ss_pred HHH---HHHhcc---CCceEEcCCCCCHHHHHHHHhcCCC-CCEEEEEEeCHHHHHHHHhcC
Q psy6801 74 LVK---NEVKDL---KCNYLLDGFPRTYDQAMALFKNHLS-PNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 74 ~~~---~~l~~~---~~~~ildg~p~~~~~~~~l~~~~~~-~~~vi~l~~~~e~~~~R~~~R 128 (228)
.+. ..+... +..+|.|.+.-+..++......... +-..+-+.||.|++.+|-.+|
T Consensus 99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr 160 (205)
T COG3896 99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRR 160 (205)
T ss_pred HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhc
Confidence 111 112222 6678888765543332221111122 335888999999999886665
No 239
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.54 E-value=7.9e-05 Score=64.36 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
..|+|.||||||||++|+.|++.++.+++.+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i 139 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIA 139 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence 3599999999999999999999999888765
No 240
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00072 Score=57.93 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=23.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.|.+|+++||+|+||||.+..||..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 241
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.53 E-value=0.00011 Score=53.16 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=26.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh---Ccceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF---NVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~ 38 (228)
...++|.|+||+||||+++.+++.+ +..++..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 3468999999999999999999987 5544433
No 242
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.53 E-value=9.6e-05 Score=60.10 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..++|.||||+||||+|+.+++.+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999875
No 243
>PHA03134 thymidine kinase; Provisional
Probab=97.52 E-value=0.01 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
-.+|+|.|+.|.||||+++.|+..
T Consensus 13 ~~rvYlDG~~GvGKTT~~~~l~~~ 36 (340)
T PHA03134 13 IVRIYLDGAYGIGKSTTGRVMASA 36 (340)
T ss_pred EEEEEEeCCCcCCHHHHHHHHHHh
Confidence 357999999999999999888764
No 244
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.51 E-value=9.4e-05 Score=63.63 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=27.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-|++.||||+|||++|+.++..++..++.+
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence 45699999999999999999999998876543
No 245
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.51 E-value=9.8e-05 Score=60.10 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCccee
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHI 36 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i 36 (228)
.-+++.|+||+|||++|+.|++.+|.+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 45889999999999999999999988766
No 246
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.50 E-value=6.3e-05 Score=53.90 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=21.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|+++|+||+||||+++.||+.++..+..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 78999999999999999999998866543
No 247
>KOG0737|consensus
Probab=97.49 E-value=0.00036 Score=58.34 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=29.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
++-|.++||||+|||-+|+++|++-+..+|++
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 44699999999999999999999999988876
No 248
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.48 E-value=0.00059 Score=58.05 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=29.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC-------cceeehhHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN-------VKHIATGDI 41 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~-------~~~i~~~d~ 41 (228)
+.+|++.||.|+||||...+||.+|. +.+|++|.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY 244 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY 244 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc
Confidence 45799999999999999999998884 567787554
No 249
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.48 E-value=0.0058 Score=53.84 Aligned_cols=166 Identities=12% Similarity=0.153 Sum_probs=94.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
.+.+|++.|..+|||....++|.+.++-..+.+-.+ ..|...... .-+.......+-..|..
T Consensus 298 ~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~-------~~Pt~~E~~-----------~~~lwRf~~~lP~~G~i 359 (493)
T TIGR03708 298 RSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPI-------AAPTDEEKA-----------QHYLWRFWRHIPRRGRI 359 (493)
T ss_pred CCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeC-------CCcCHHHHc-----------CcHHHHHHHhCCCCCeE
Confidence 578999999999999999999999986655544111 011100000 00111112222111444
Q ss_pred eEEcC-------------CCCC------HHHHHHHHhc---CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCC
Q psy6801 86 YLLDG-------------FPRT------YDQAMALFKN---HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFN 143 (228)
Q Consensus 86 ~ildg-------------~p~~------~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~ 143 (228)
.|+|. +... ..+...|+.. ....-+.+||.++.++-.+|+..|..+|...
T Consensus 360 ~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~-------- 431 (493)
T TIGR03708 360 TIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKR-------- 431 (493)
T ss_pred EEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccC--------
Confidence 44543 2211 2333333322 1223357999999999999999996544321
Q ss_pred CCCCCCCCcccccccccCCCCcHHH--HHHHHHHHHhcHHHHHHHhhh-CCcEEEEeCCCC----cchHHHHHHHHhhc
Q psy6801 144 APKKPGIDDITGEKLIQRDDDKPEA--IKKRLETFDQTIKPLLDYYDN-REVLDTFTGNTT----DEIWPRIYEHLNIR 215 (228)
Q Consensus 144 ~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~~~~~~~~~~-~~~~i~id~~~~----e~v~~~i~~~l~~~ 215 (228)
=.-+++. -.++...|...++.++..-.. ..=.++|++++. =.|.+.|...|...
T Consensus 432 ------------------WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~~ar~~v~~~l~~~l~~~ 492 (493)
T TIGR03708 432 ------------------YKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKRYARIKVLRTVCDAIEAA 492 (493)
T ss_pred ------------------CcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChHHHHHHHHHHHHHHHHhh
Confidence 1123333 345688898888888776543 234788999885 33555555555543
No 250
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00011 Score=66.26 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=30.2
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
.+..+++|+.||||+|||++++.+|+.+|-.++.
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR 380 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR 380 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence 4677899999999999999999999999887654
No 251
>PF13245 AAA_19: Part of AAA domain
Probab=97.47 E-value=0.00014 Score=47.46 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=17.4
Q ss_pred ceEEEEcCCCCChH-HHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKG-TISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKT-t~a~~L~~~~ 31 (228)
..++|.|||||||| |+++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45677999999999 5555555544
No 252
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.47 E-value=9.9e-05 Score=63.19 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=30.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDIL 42 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~ 42 (228)
.|.+|.|.|+.||||||+++.|...+. ...|+.||+.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 578899999999999999999987762 4567777765
No 253
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.47 E-value=0.00063 Score=56.88 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=23.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|+|+||+||||||++..|+..+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999999999999999998887
No 254
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.45 E-value=0.00014 Score=62.08 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=28.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-++|.||||+|||++++.++..++..++.+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 45699999999999999999999998877654
No 255
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.44 E-value=0.00013 Score=62.92 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
..|+|.||||||||++|+.|++.++.++..+
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 4699999999999999999999999877654
No 256
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.43 E-value=0.00015 Score=62.50 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=28.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
.|.-|++.||||+|||++++.++...+.+++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 355699999999999999999999998877654
No 257
>KOG0733|consensus
Probab=97.43 E-value=0.0017 Score=57.76 Aligned_cols=32 Identities=22% Similarity=0.525 Sum_probs=28.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|-=|+++||||||||-+|+.+|.+-++.+|++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisV 576 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISV 576 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence 33489999999999999999999998888876
No 258
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00011 Score=57.14 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRII 28 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~ 28 (228)
..-+++|+||+||||||+.+.|.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999883
No 259
>CHL00181 cbbX CbbX; Provisional
Probab=97.42 E-value=0.00019 Score=59.10 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+..++|.||||+||||+|+.+++.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999998876
No 260
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.42 E-value=0.003 Score=47.75 Aligned_cols=116 Identities=9% Similarity=0.048 Sum_probs=67.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCc---ceeehhHHHHHHHhcc-----------ChhhHH----HHHHHHCCCCCChHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNV---KHIATGDILRSHIAQN-----------TTLGLK----AKEYMNKGLLVPDDL 70 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~---~~i~~~d~~~~~~~~~-----------~~~~~~----~~~~~~~~~~~~~~~ 70 (228)
+|+|+|..+|||-|+|..|.+.++. .++...+-++..+... .++.+. +..+.+.-..-....
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~ 80 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF 80 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence 5899999999999999999999875 2466656665554431 111111 111111110111234
Q ss_pred HHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhc
Q psy6801 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127 (228)
Q Consensus 71 ~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~ 127 (228)
+.+.+...+. ...|||++. +-......|.......-+.|-+.+++++..+|.-.
T Consensus 81 F~r~~~~~~~--~~v~iIsD~-Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~ 134 (182)
T TIGR01223 81 FCRKIVEGIS--QPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWV 134 (182)
T ss_pred HHHHHHhccC--CCEEEEeCC-CcccHHHHHHHHcCCceEEEEEecCHHHHHHHHHh
Confidence 4444443332 457788775 23334555665522233589999999999988643
No 261
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0011 Score=55.43 Aligned_cols=42 Identities=17% Similarity=0.438 Sum_probs=34.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeeh--hHHHHHHHhcc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIAT--GDILRSHIAQN 49 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~--~d~~~~~~~~~ 49 (228)
+=|++.||||+|||-+|+.+|...++.+|.+ .+++++.+..+
T Consensus 186 KGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEG 229 (406)
T COG1222 186 KGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEG 229 (406)
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccc
Confidence 3499999999999999999999999988754 45666655443
No 262
>KOG1384|consensus
Probab=97.40 E-value=0.0007 Score=55.78 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=31.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
-++|+|+|+.|||||-+|-.||.+|+..+|+.|.+
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm 41 (348)
T KOG1384|consen 7 DKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM 41 (348)
T ss_pred ceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence 35799999999999999999999999999988654
No 263
>KOG2004|consensus
Probab=97.39 E-value=0.00015 Score=65.28 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=30.0
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
...++++||.||||.|||++++.+|+.+|-.++.
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR 468 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR 468 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE
Confidence 4567899999999999999999999999886653
No 264
>PRK13768 GTPase; Provisional
Probab=97.39 E-value=0.00019 Score=58.16 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=22.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
++.++|.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 4579999999999999999998777
No 265
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00017 Score=59.24 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=27.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
.|+++||.|||||-+|+.||+.+++|+-=+
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 699999999999999999999999988643
No 266
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.37 E-value=0.00022 Score=54.19 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=23.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
.+++.||+|+|||.+|+.|++.+..
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5899999999999999999999984
No 267
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0012 Score=56.38 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=26.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----Ccceeehh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATG 39 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~ 39 (228)
+.+|+|+||+||||||++..|+..+ .+.+++.|
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 4689999999999999999998776 23456664
No 268
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.00017 Score=58.28 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=24.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcce
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKH 35 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~ 35 (228)
.++++||||-||||+|+.+|.++|..+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 589999999999999999999998744
No 269
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00021 Score=59.17 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=29.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
.|+.|+++||.|.|||.+|++||+-.+.|++.
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK 80 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIK 80 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 68899999999999999999999999888873
No 270
>PF05729 NACHT: NACHT domain
Probab=97.35 E-value=0.00018 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=21.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.++|.|++|+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 58999999999999999999887
No 271
>KOG0735|consensus
Probab=97.34 E-value=0.0013 Score=59.42 Aligned_cols=39 Identities=31% Similarity=0.624 Sum_probs=32.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeeh--hHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIAT--GDILRSHIA 47 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~--~d~~~~~~~ 47 (228)
=|++.||||||||.++..++...++.+|++ -+++.+.+.
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 489999999999999999999999999987 345555443
No 272
>KOG0739|consensus
Probab=97.33 E-value=0.0035 Score=51.34 Aligned_cols=38 Identities=18% Similarity=0.461 Sum_probs=31.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceee--hhHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIA--TGDILRSHI 46 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~--~~d~~~~~~ 46 (228)
-|+++||||+|||.+|+.+|.+-+-.+|+ ..|++.+-+
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 38999999999999999999999887764 457766543
No 273
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.32 E-value=0.00017 Score=55.20 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=25.8
Q ss_pred ccc-ceEEEEcCCCCChHHHHHHHHHHh----Ccceeeh
Q psy6801 5 LLM-LKAVIIGAPGCGKGTISSRIIDHF----NVKHIAT 38 (228)
Q Consensus 5 ~~~-~~i~i~G~~GsGKTt~a~~L~~~~----~~~~i~~ 38 (228)
+.+ .+|-+.||||||||++..++.+.+ ++.+|.-
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 345 789999999999999887765554 6666644
No 274
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.32 E-value=0.00023 Score=61.85 Aligned_cols=32 Identities=16% Similarity=0.387 Sum_probs=27.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-++|.||||+|||++++.++..++..++.+
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 45689999999999999999999998776643
No 275
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.32 E-value=0.00023 Score=53.42 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
|+++.|+|++||||||++.+|...+.
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999873
No 276
>PHA02244 ATPase-like protein
Probab=97.32 E-value=0.00024 Score=60.08 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
.-|+|.||+|+|||++|+.|+..++.+++.+..+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 3489999999999999999999999998877543
No 277
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.32 E-value=0.00023 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+|+|.|++||||||+.++|+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999997653
No 278
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.31 E-value=0.00023 Score=55.53 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
|.+|.|.|++||||||+.+.+...+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998875
No 279
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.31 E-value=0.00023 Score=63.18 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=28.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-+++.||||+|||++++.|+...+.+++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 44699999999999999999999999887754
No 280
>PRK08116 hypothetical protein; Validated
Probab=97.30 E-value=0.0034 Score=51.26 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=28.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---C--cceeehhHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF---N--VKHIATGDILRS 44 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~---~--~~~i~~~d~~~~ 44 (228)
-++|.|++|+|||.++..+++.+ + +.++++.+++..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 38999999999999999999886 3 345677666543
No 281
>KOG0734|consensus
Probab=97.30 E-value=0.0014 Score=57.43 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=31.5
Q ss_pred cccccceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 3 NTLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 3 ~~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
++..|+=|++.||||+|||-+|+.+|-+-+++++.+
T Consensus 333 GGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 333 GGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred cCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 345677799999999999999999999999998754
No 282
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.0015 Score=55.91 Aligned_cols=107 Identities=17% Similarity=0.242 Sum_probs=55.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHH-HHhccChhhHHHH-HHHHCC-CCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRS-HIAQNTTLGLKAK-EYMNKG-LLVPDDLMIDLVKN 77 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~-~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ 77 (228)
.|-+|.+.|.=||||||.|.+||..| +.-.+++ |.+|. .+.+-..+++.+. ..+..+ ..-|-++....+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa-D~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA-DTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec-ccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999988 3334555 44443 2222111221111 111111 11233333333333
Q ss_pred HHhccCCceEEcCCCCC------HHHHHHHHhcCCCCCEEEEE
Q psy6801 78 EVKDLKCNYLLDGFPRT------YDQAMALFKNHLSPNCVMHI 114 (228)
Q Consensus 78 ~l~~~~~~~ildg~p~~------~~~~~~l~~~~~~~~~vi~l 114 (228)
.-......+|+|.-.+. +.+...+... ..|+-++++
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~-~~P~E~llV 219 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEV-INPDETLLV 219 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhh-cCCCeEEEE
Confidence 22221456777864443 4444455555 667764443
No 283
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.30 E-value=0.00027 Score=58.64 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcce
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKH 35 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~ 35 (228)
..++|+||||+|||++++.+++.++..+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4589999999999999999999997653
No 284
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.29 E-value=0.00025 Score=52.05 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
++|.|+|+.+|||||+++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998887
No 285
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.29 E-value=0.00025 Score=59.41 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+.+|.|.|+|||||||++..|...+
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999987776
No 286
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.29 E-value=0.00026 Score=59.55 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=25.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcce
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKH 35 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~ 35 (228)
+..++|.||||+||||+|+.+++.++..+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 34689999999999999999999998754
No 287
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.28 E-value=0.00027 Score=62.79 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
.+.++.||+||||||..+.||+++++.+..
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 468999999999999999999999886653
No 288
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.28 E-value=0.00079 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=20.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..-.++|.|+||||||++|..++..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999887554
No 289
>PRK04195 replication factor C large subunit; Provisional
Probab=97.28 E-value=0.00027 Score=62.57 Aligned_cols=32 Identities=19% Similarity=0.445 Sum_probs=28.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+..++|.||||+||||+++.|++.+++.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 56799999999999999999999998876644
No 290
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.27 E-value=0.00023 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|++.|++||||||+++.|...
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998643
No 291
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.27 E-value=0.00033 Score=57.72 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
-++|.||||+||||+|+.+++.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999998888776
No 292
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.27 E-value=0.00031 Score=50.24 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
..+|++.|+-||||||+++.+++.+|.
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357999999999999999999999976
No 293
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.27 E-value=0.0011 Score=52.70 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=25.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh------CcceeehhH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF------NVKHIATGD 40 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~------~~~~i~~~d 40 (228)
.+-.++|.|+||||||++|.+++... ++.++++++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 34579999999999999998865432 345666643
No 294
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.26 E-value=0.003 Score=56.98 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=29.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHh-------CcceeehhHHHHHH
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHF-------NVKHIATGDILRSH 45 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~-------~~~~i~~~d~~~~~ 45 (228)
++|+|++|+|||.+++.++..+ .+.+++..+++...
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 8999999999999999998865 34678887776554
No 295
>KOG2702|consensus
Probab=97.26 E-value=0.0017 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
.+.+.|+||+||||++..+.+.++
T Consensus 121 l~glag~pGtgkst~~a~v~~aWp 144 (323)
T KOG2702|consen 121 LTGLAGRPGTGKSTRIAAVDNAWP 144 (323)
T ss_pred eeeeecCCCCcchhHHHHHHhhcc
Confidence 689999999999999999988663
No 296
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.25 E-value=0.00032 Score=48.81 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
..++|.||+||||||+++.+. -+-..+.-+|+
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 478999999999999999987 22233444444
No 297
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=97.25 E-value=0.00067 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=18.9
Q ss_pred CC-CCEEEEEEeCHHHHHHHHhcC
Q psy6801 106 LS-PNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 106 ~~-~~~vi~l~~~~e~~~~R~~~R 128 (228)
.. ||++|||++|++++.+|+.+|
T Consensus 65 ~~~pdl~IYL~~~~e~~~~RI~kR 88 (146)
T PF01712_consen 65 PKSPDLIIYLDASPETCLERIKKR 88 (146)
T ss_dssp CHH-SEEEEEE--HHHHHHHHHHC
T ss_pred hccCCeEEEEeCCHHHHHHHHHHh
Confidence 45 999999999999999999999
No 298
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.25 E-value=0.00028 Score=54.98 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
.|+|.||+||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999998887774
No 299
>PRK13695 putative NTPase; Provisional
Probab=97.24 E-value=0.00031 Score=53.48 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
|+|+|.|++||||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999987765
No 300
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.23 E-value=0.00034 Score=51.19 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
.++++++.|.||+||||+...|+.. |+
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~-Gf 34 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARA-GF 34 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHc-Cc
Confidence 4568999999999999999999876 44
No 301
>PRK04328 hypothetical protein; Provisional
Probab=97.21 E-value=0.00099 Score=53.81 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.-.++|.|+||||||++|..++..
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999987654
No 302
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.20 E-value=0.00037 Score=55.90 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+|.|+||||+||||+...|.+.|
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 4589999999999999999998887
No 303
>PRK12377 putative replication protein; Provisional
Probab=97.20 E-value=0.00057 Score=55.07 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=28.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---C--cceeehhHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF---N--VKHIATGDILRS 44 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~---~--~~~i~~~d~~~~ 44 (228)
-++|.|+||+|||+++..+++.+ + +.++++.+++..
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 58999999999999999999887 2 345676666543
No 304
>COG4240 Predicted kinase [General function prediction only]
Probab=97.20 E-value=0.00042 Score=54.38 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=31.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh------CcceeehhHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF------NVKHIATGDILRSH 45 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~------~~~~i~~~d~~~~~ 45 (228)
.|+++.|+||-||||||++..|...+ ....+|.||+...+
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlth 94 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTH 94 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcch
Confidence 47899999999999999998775554 23568899987554
No 305
>KOG4238|consensus
Probab=97.20 E-value=0.0027 Score=53.10 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=62.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh---Ccceeeh-hHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHH-HHHhc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF---NVKHIAT-GDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVK-NEVKD 81 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 81 (228)
.-.|++.|.+|+||||++-.|-+.+ |+++..+ +|-+|..+...-.+.. .-..+.+..+.+ .++..
T Consensus 50 gctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~----------edreenirriaevaklfa 119 (627)
T KOG4238|consen 50 GCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSP----------EDREENIRRIAEVAKLFA 119 (627)
T ss_pred ceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCc----------hhHHHHHHHHHHHHHHHh
Confidence 3468999999999999999997766 6776655 3556655443221110 000112222211 12222
Q ss_pred cCCceE-EcC----CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHh
Q psy6801 82 LKCNYL-LDG----FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLS 126 (228)
Q Consensus 82 ~~~~~i-ldg----~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~ 126 (228)
..|.| +.. |..++..+..+.+...-|-+-+|++++.++|.+|--
T Consensus 120 -daglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~ 168 (627)
T KOG4238|consen 120 -DAGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDV 168 (627)
T ss_pred -cCCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcCh
Confidence 34433 333 444455555555543445568999999999987743
No 306
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.19 E-value=0.00059 Score=52.22 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRSH 45 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~~ 45 (228)
.-++|.|++|+|||.+|..++.++ .+.++++.+++...
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 458999999999999999998765 45678888887653
No 307
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.19 E-value=0.00036 Score=52.97 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=25.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---C--cceeehh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF---N--VKHIATG 39 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~---~--~~~i~~~ 39 (228)
++++.|+|||||||++..++..+ + +.+++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 57899999999999999998876 3 3456664
No 308
>PRK06921 hypothetical protein; Provisional
Probab=97.19 E-value=0.0011 Score=54.04 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh----Cc--ceeehhHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF----NV--KHIATGDILR 43 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~----~~--~~i~~~d~~~ 43 (228)
.-++|.|++|+|||.++..+++.+ +. .++++.+++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 458999999999999999998875 23 3556555543
No 309
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.19 E-value=0.00046 Score=54.80 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=27.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDI 41 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~ 41 (228)
..++|.|++|||||++++.++... .+.+++..+.
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 458999999999999999999876 5566776544
No 310
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.18 E-value=0.00042 Score=60.15 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
..++|.||||+||||+++.+++..+..++.+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3688999999999999999999988766544
No 311
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.17 E-value=0.00032 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.-.++|+||+||||||+.+.++-
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999998854
No 312
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.16 E-value=0.0004 Score=53.20 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=23.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh-----Ccceeehh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF-----NVKHIATG 39 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~ 39 (228)
.++|.|+||+|||+++..++... .+.+++++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 37899999999999999886654 34556653
No 313
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.16 E-value=0.00032 Score=60.12 Aligned_cols=23 Identities=35% Similarity=0.749 Sum_probs=21.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
|+|.|+||+||||+|+.||+.|.
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred eEEecCCCCChhHHHHHHHHHHH
Confidence 89999999999999999999883
No 314
>KOG1533|consensus
Probab=97.16 E-value=0.00032 Score=55.19 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
--+|+|||||||||.|.-..+-+
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHH
Confidence 36899999999999998777665
No 315
>PRK06893 DNA replication initiation factor; Validated
Probab=97.16 E-value=0.00056 Score=54.52 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh-----Ccceeehh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATG 39 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~ 39 (228)
+.++|+||||+|||+++..++..+ ++.++++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 457999999999999999999876 55666663
No 316
>KOG0736|consensus
Probab=97.15 E-value=0.004 Score=56.85 Aligned_cols=29 Identities=17% Similarity=0.503 Sum_probs=27.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|++.||||+|||-+|+.+|.++.+.++++
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcsL~FlSV 736 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATECSLNFLSV 736 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhceeeEEee
Confidence 89999999999999999999999988876
No 317
>KOG4622|consensus
Probab=97.15 E-value=0.015 Score=44.62 Aligned_cols=34 Identities=26% Similarity=0.626 Sum_probs=25.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHH---h---CcceeehhHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDH---F---NVKHIATGDIL 42 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~---~---~~~~i~~~d~~ 42 (228)
.++++|.|.+||||+++++.-. + .+.+.++||++
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFl 42 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFL 42 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 5789999999999999987432 2 34566777775
No 318
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.15 E-value=0.00061 Score=53.88 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=27.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDI 41 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~ 41 (228)
+..++|+|++|||||++++.+++... +.+++..++
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 45699999999999999999988762 345665444
No 319
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.14 E-value=0.0022 Score=53.83 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=30.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRS 44 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~ 44 (228)
.-++|.|++|+|||.++..+++.+ .+.++++.+++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 458999999999999999999986 4466777777554
No 320
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.14 E-value=0.00041 Score=48.94 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~ 29 (228)
+|+|.|++||||||+.+.|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999975
No 321
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.14 E-value=0.00041 Score=56.36 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
..++|.|++||||||+++.++..+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3689999999999999999999875
No 322
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.13 E-value=0.00041 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+++|.|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998876
No 323
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.13 E-value=0.0004 Score=52.91 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=18.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
.+..++|.|++|+|||++.+.+.+.+.
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999998877763
No 324
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.12 E-value=0.00056 Score=50.57 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=25.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
..=|+|.|++|+||||+|..|.++ +..+++-
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaD 44 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVAD 44 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEEC
Confidence 345899999999999999999876 6666654
No 325
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.11 E-value=0.00047 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+|.|+|++||||||++.+|.+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 326
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.11 E-value=0.00048 Score=55.12 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGD 40 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d 40 (228)
..++|+||+|||||+++..+++... +.++++++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4689999999999999999988764 45677654
No 327
>CHL00176 ftsH cell division protein; Validated
Probab=97.11 E-value=0.00052 Score=62.49 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=28.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-+++.||||+|||++|+.++...+.+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 55699999999999999999999999888765
No 328
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.10 E-value=0.00058 Score=51.80 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
+++|.|++|||||++|..++...+-
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~ 25 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGG 25 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4789999999999999999887654
No 329
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.09 E-value=0.00044 Score=51.81 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=24.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
+|+++.|+|..+|||||+..+|..++..
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~ 28 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKA 28 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHh
Confidence 3568999999999999999999998843
No 330
>PRK06526 transposase; Provisional
Probab=97.08 E-value=0.00067 Score=54.90 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=27.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRS 44 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~ 44 (228)
+..++|+||||+|||++|..|+... .+.++++.+++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 3468999999999999999997765 2234455454443
No 331
>PHA03138 thymidine kinase; Provisional
Probab=97.08 E-value=0.0086 Score=50.02 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
-.+|+|.|+.|+||||+++.+.+.+
T Consensus 12 ~~riYleG~~GvGKTT~~~~~l~~~ 36 (340)
T PHA03138 12 ILRIYLDGAFGIGKTTAAEAFLHGF 36 (340)
T ss_pred EEEEEEECCCCcCHHhHHHHHHHhh
Confidence 4589999999999999998776654
No 332
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.08 E-value=0.00053 Score=56.07 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
|+.|.|+|.+||||||++..|+..+
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999999988
No 333
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.07 E-value=0.0033 Score=49.78 Aligned_cols=117 Identities=14% Similarity=0.214 Sum_probs=57.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh-------CcceeehhHHHHHHHhc--cChhhHHHHHHHHCCC--------CCC-h--
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF-------NVKHIATGDILRSHIAQ--NTTLGLKAKEYMNKGL--------LVP-D-- 68 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~-------~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~-~-- 68 (228)
-++|.|++|+|||.+.+.++.++ .+.+++.+++....... ........ +.+..-. .+. .
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~-~~~~~~DlL~iDDi~~l~~~~~ 114 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFK-DRLRSADLLIIDDIQFLAGKQR 114 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHH-HHHCTSSEEEEETGGGGTTHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhh-hhhhcCCEEEEecchhhcCchH
Confidence 37999999999999999997765 34578887776654332 11121221 2111111 011 1
Q ss_pred --HHHHHHHHHHHhccCCceEEcC--CCCCHH-HHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 69 --DLMIDLVKNEVKDLKCNYLLDG--FPRTYD-QAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 69 --~~~~~~~~~~l~~~~~~~ildg--~p~~~~-~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+.+..++...... ++.+|+.+ -|.... ....+... +.-.+++-+..|++..+.++..+
T Consensus 115 ~q~~lf~l~n~~~~~-~k~li~ts~~~P~~l~~~~~~L~SR-l~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 115 TQEELFHLFNRLIES-GKQLILTSDRPPSELSGLLPDLRSR-LSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp HHHHHHHHHHHHHHT-TSEEEEEESS-TTTTTTS-HHHHHH-HHCSEEEEE----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-CCeEEEEeCCCCccccccChhhhhh-HhhcchhhcCCCCHHHHHHHHHH
Confidence 1223333333333 66666643 454422 11222222 22346788888887766555554
No 334
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.07 E-value=0.00045 Score=61.11 Aligned_cols=28 Identities=25% Similarity=0.598 Sum_probs=24.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVK 34 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~ 34 (228)
|.-++|.||||+|||++++.+++.++..
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4569999999999999999999998543
No 335
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.06 E-value=0.0005 Score=51.64 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+-.|+|+||+||||||+.+.++.-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34579999999999999999998754
No 336
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.00059 Score=60.07 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=24.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
+..++|+||||+||||+|+.+++.++.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345899999999999999999999875
No 337
>KOG0780|consensus
Probab=97.06 E-value=0.0017 Score=54.69 Aligned_cols=107 Identities=11% Similarity=0.160 Sum_probs=57.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh---Cc--ceeehhHHHHHHHhccChhhHHHHHHHHCCCCCCh----HHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF---NV--KHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD----DLMIDLVK 76 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~---~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 76 (228)
.|-+|.+.|.-||||||.|.+||-.| |+ ..++. |.+|.. .+.+.-....+.+.++.. .--..+..
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvca-DTFRag-----AfDQLkqnA~k~~iP~ygsyte~dpv~ia~ 173 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCA-DTFRAG-----AFDQLKQNATKARVPFYGSYTEADPVKIAS 173 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEee-cccccc-----hHHHHHHHhHhhCCeeEecccccchHHHHH
Confidence 46689999999999999999999887 33 34555 333321 112222222222211110 00112222
Q ss_pred HHHhcc----CCceEEcCCCCCHHHHHHHHhc-----CCCCCEEEE-EEeCH
Q psy6801 77 NEVKDL----KCNYLLDGFPRTYDQAMALFKN-----HLSPNCVMH-INVPK 118 (228)
Q Consensus 77 ~~l~~~----~~~~ildg~p~~~~~~~~l~~~-----~~~~~~vi~-l~~~~ 118 (228)
+-+.+. ...+|+|.-.++..+...+++. .+.||.+|| ++++-
T Consensus 174 egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 174 EGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 223222 5557778766665555444332 377998654 55554
No 338
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.05 E-value=0.00044 Score=54.61 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=26.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
.|..++|+|+||+||||+|+.|+. +..+++.|..
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~ 44 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMS 44 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC--CCEEEecccc
Confidence 467899999999999999999963 3455666443
No 339
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.0066 Score=49.19 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=30.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh---Cc--ceeehhHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF---NV--KHIATGDILRSH 45 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~---~~--~~i~~~d~~~~~ 45 (228)
..-+++.|+||+|||.+|..++.++ |. .++.+.+++.+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 3468999999999999999888776 33 567777777654
No 340
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.04 E-value=0.00068 Score=57.09 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=25.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC--cceee
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN--VKHIA 37 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~--~~~i~ 37 (228)
...-|+|.||||+|||.+|..+++.+| .|+..
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 456799999999999999999999996 56654
No 341
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.00051 Score=54.62 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-.|+|.||+||||||+.+.+|=-.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999986543
No 342
>KOG0743|consensus
Probab=97.02 E-value=0.00053 Score=58.77 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=26.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
.++.||||+||||+..++|..+++.+.++
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 68999999999999999999998877654
No 343
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.02 E-value=0.0006 Score=56.90 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=25.5
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
|.+.-|+|.||||+|||.+|-.+++.+|
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999999996
No 344
>PRK04296 thymidine kinase; Provisional
Probab=97.00 E-value=0.00065 Score=52.55 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++++|++||||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999998887
No 345
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.00 E-value=0.001 Score=58.98 Aligned_cols=85 Identities=19% Similarity=0.299 Sum_probs=46.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHHHHhccChhhHHHHHHHHCCCC---------CChHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLL---------VPDDLMI 72 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 72 (228)
.-.++|.|+||+||||++..++... ...+++.++-..+.......+|-.+..+...|.. ...+...
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~ 342 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDHL 342 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHHH
Confidence 4479999999999999999998765 3456655433222222222233223344443321 1113334
Q ss_pred HHHHHHHhcc-CCceEEcCC
Q psy6801 73 DLVKNEVKDL-KCNYLLDGF 91 (228)
Q Consensus 73 ~~~~~~l~~~-~~~~ildg~ 91 (228)
..+.+.+.+. .+-+|+|+.
T Consensus 343 ~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 343 QIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred HHHHHHHHHcCCCEEEEcCH
Confidence 4445555543 556888874
No 346
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.00 E-value=0.00066 Score=55.85 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=26.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh----C---cceeehhH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF----N---VKHIATGD 40 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~----~---~~~i~~~d 40 (228)
+.+|+|+||+||||||++..|+..+ + +.+++.|.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4589999999999999999998765 2 24566654
No 347
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.99 E-value=0.00079 Score=50.47 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=23.4
Q ss_pred CCcccccceEEEEcCCCCChHHHHHHHHH
Q psy6801 1 MLNTLLMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 1 m~~~~~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
|.......+|+++|++||||||+.+.|..
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHh
Confidence 55443346899999999999999999864
No 348
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.98 E-value=0.0074 Score=52.25 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=28.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh-----C--cceeehhHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF-----N--VKHIATGDILRS 44 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~-----~--~~~i~~~d~~~~ 44 (228)
-++|.|++|+|||++++.+++.+ + +.+++..++...
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 47899999999999999998876 2 356777666544
No 349
>KOG1970|consensus
Probab=96.98 E-value=0.00079 Score=59.07 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
..+.+|+||+||||||..+.|++++|+.++.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 3478999999999999999999999987664
No 350
>PRK09183 transposase/IS protein; Provisional
Probab=96.97 E-value=0.0011 Score=53.85 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh---C--cceeehhHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF---N--VKHIATGDIL 42 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~---~--~~~i~~~d~~ 42 (228)
..++|.||+|+|||+++..|+... | +.+++..+++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 468999999999999999997653 3 3455655554
No 351
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.97 E-value=0.0009 Score=41.68 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|.|+.||||||+...+.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999887543
No 352
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.97 E-value=0.0023 Score=51.11 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=25.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----Ccceeehh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATG 39 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~ 39 (228)
+-.++|.|+||||||+++..++... .+.+++++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4578999999999999999986543 33455553
No 353
>PRK08181 transposase; Validated
Probab=96.96 E-value=0.0012 Score=53.93 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh---C--cceeehhHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF---N--VKHIATGDILRSH 45 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~---~--~~~i~~~d~~~~~ 45 (228)
..++|+||+|+|||.++..++... | +.++++.+++...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 358999999999999999998654 3 4567777776553
No 354
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.96 E-value=0.0022 Score=51.15 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=20.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-.++|.|++||||||+|.+++..+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4479999999999999986654443
No 355
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.95 E-value=0.00076 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
....+|+|.|++||||||+.++|..
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4466899999999999999999864
No 356
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.95 E-value=0.00084 Score=62.83 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=28.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
.+..+++.||||+|||++|+.|++.++.+++.+
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i 378 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF 378 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence 345799999999999999999999998776543
No 357
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.95 E-value=0.0006 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|+|++||||||+.+.|+-.+
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 4589999999999999999997765
No 358
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.94 E-value=0.00093 Score=55.75 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=25.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCccee
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHI 36 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i 36 (228)
.|..+++.||+|+||||+++.+++.++..++
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 4556777999999999999999998865443
No 359
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.94 E-value=0.0013 Score=52.87 Aligned_cols=36 Identities=28% Similarity=0.550 Sum_probs=28.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRS 44 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~~ 44 (228)
-+++.|++|+|||+++..++..+ .+.++++.+++..
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 48999999999999999999987 3345677666543
No 360
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.94 E-value=0.00081 Score=54.88 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+.+|.|+|+||+||||+...|...|
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHH
Confidence 35689999999999999999999888
No 361
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.93 E-value=0.00077 Score=57.62 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=24.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
.|.+|.|+|++||||||++..|.+++.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998875
No 362
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.93 E-value=0.0008 Score=50.18 Aligned_cols=21 Identities=29% Similarity=0.695 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~ 29 (228)
+|+|.|++||||||+.+++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999964
No 363
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0053 Score=53.17 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|+|+||+|+||||+..+|+..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998764
No 364
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.92 E-value=0.00086 Score=53.58 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
|.+++|+|++||||||++..|-..+
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999888876655
No 365
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.92 E-value=0.00087 Score=62.39 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=27.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+.-|+|.||||+||||+++.++..++.+++.+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 45689999999999999999999998876643
No 366
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.91 E-value=0.00094 Score=56.18 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=27.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
....+++.|+||+|||++++.+|+.++.+++.
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 34569999999999999999999999876653
No 367
>PLN03025 replication factor C subunit; Provisional
Probab=96.91 E-value=0.00085 Score=56.18 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.++|.||||+||||++..+++.+
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987
No 368
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.91 E-value=0.0007 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
-++|.|+||||||++|+++...+
T Consensus 24 ~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 24 HLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -EEEES-CCCTHHHHHHHHHHCS
T ss_pred CeEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998776
No 369
>PF13479 AAA_24: AAA domain
Probab=96.91 E-value=0.00072 Score=53.28 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=23.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+.+++|.|+||+||||+|..+ -+..+|++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~---~k~l~id~ 31 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL---PKPLFIDT 31 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC---CCeEEEEe
Confidence 568999999999999999988 33445665
No 370
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.91 E-value=0.00095 Score=60.48 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=28.5
Q ss_pred CCcccccceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 1 m~~~~~~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
|++.|.+++|.|+|.+||||||++.+|..++.
T Consensus 4 ~~~~~~~~vi~ivG~s~sGKTTlie~li~~L~ 35 (597)
T PRK14491 4 FTNPLSIPLLGFCAYSGTGKTTLLEQLIPELN 35 (597)
T ss_pred ccCCCCccEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 56677788999999999999999999999883
No 371
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.90 E-value=0.00089 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...++|.|++||||||+.+.|...+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999999998766
No 372
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.90 E-value=0.015 Score=53.40 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=28.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-|++.||||+|||++++.++...+.+++..
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 44599999999999999999999999887654
No 373
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.89 E-value=0.00093 Score=52.34 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=23.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
++.|+|.|++||||||+.+.+.+.++
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999988754
No 374
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.88 E-value=0.00077 Score=60.04 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..++++.||||+||||+++.|++.+
T Consensus 103 ~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 103 KQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CceEEEecCCCCCchHHHHHHHHHH
Confidence 4589999999999999999999876
No 375
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.87 E-value=0.0086 Score=49.75 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=49.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh---Cc-ceeehhHHHHHHH-hccChhhHHHHHH-HH--CCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF---NV-KHIATGDILRSHI-AQNTTLGLKAKEY-MN--KGLLVPDDLMIDLVKN 77 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~---~~-~~i~~~d~~~~~~-~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~ 77 (228)
.|.+|+|.|..|+||||...+||..| |. ..+-+.|-+|..- .+-..+++...-- +. .| .-|-.+..+.+..
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G-~DpAaVafDAi~~ 216 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEG-ADPAAVAFDAIQA 216 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCC-CCcHHHHHHHHHH
Confidence 47789999999999999999999998 44 4566777777642 2212222221111 11 12 2233445555555
Q ss_pred HHhccCCceEEcC
Q psy6801 78 EVKDLKCNYLLDG 90 (228)
Q Consensus 78 ~l~~~~~~~ildg 90 (228)
...+....+++|.
T Consensus 217 Akar~~DvvliDT 229 (340)
T COG0552 217 AKARGIDVVLIDT 229 (340)
T ss_pred HHHcCCCEEEEeC
Confidence 5544245566675
No 376
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.00093 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+-.+.|.|++||||||+++.|+-.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcc
Confidence 457899999999999999999654
No 377
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.001 Score=56.74 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
+..++|.||+|+||||+|+.+++.++.
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 445799999999999999999999864
No 378
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.86 E-value=0.0091 Score=52.46 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=28.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh-----C--cceeehhHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF-----N--VKHIATGDILRS 44 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~-----~--~~~i~~~d~~~~ 44 (228)
-++|.|++|+|||++++.+++.+ + +.+++..++...
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 48999999999999999999886 2 346777666544
No 379
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.86 E-value=0.00098 Score=49.33 Aligned_cols=22 Identities=36% Similarity=0.729 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.+|+|.|++|+||||+.+++..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999975
No 380
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=96.86 E-value=0.001 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
|++|.|+|++||||||++..|++.+
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L 25 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNL 25 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHH
Confidence 3579999999999999999999888
No 381
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.85 E-value=0.00093 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.-+++|.||+||||||+.+.+|--
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhc
Confidence 358999999999999999988653
No 382
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.00093 Score=58.51 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVK 34 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~ 34 (228)
+..++|+||+|+||||+|+.|++.++..
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 3358999999999999999999999763
No 383
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.85 E-value=0.00097 Score=49.55 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.+|+++|++||||||+.++|...
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999643
No 384
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.84 E-value=0.001 Score=55.86 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
.++|.||||+||||+++.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999999873
No 385
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.84 E-value=0.001 Score=49.49 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+|+++|++|+||||+..+|...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998754
No 386
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.84 E-value=0.0011 Score=65.84 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=30.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceee--hhHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIA--TGDIL 42 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~--~~d~~ 42 (228)
|.=|+++||||+|||.+|+.||...++++|. ..+++
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl 1667 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHh
Confidence 4459999999999999999999999998764 44554
No 387
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.84 E-value=0.001 Score=61.71 Aligned_cols=30 Identities=13% Similarity=0.364 Sum_probs=26.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
.++|.||||+|||++|+.||+.++.+++..
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i 519 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEe
Confidence 589999999999999999999998776644
No 388
>KOG1532|consensus
Probab=96.84 E-value=0.0015 Score=52.66 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=31.7
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDILRS 44 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~~~ 44 (228)
..|..|++.|+.||||||++++|..++. -.+|++|--+++
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~ 61 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRN 61 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhc
Confidence 3577999999999999999999987772 246777666555
No 389
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.0011 Score=56.56 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|+||+|+||||++.+|+..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998764
No 390
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.83 E-value=0.00098 Score=49.22 Aligned_cols=21 Identities=38% Similarity=0.749 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~ 29 (228)
+|+|+|++||||||+.++|..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999854
No 391
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.83 E-value=0.001 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|+|++||||||+.+.|...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 468999999999999999999653
No 392
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.82 E-value=0.0011 Score=54.33 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...|.|+|+|||||||+.+.|.+.+
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999888775
No 393
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.82 E-value=0.001 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+.+.|+-.+
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999997544
No 394
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.00093 Score=55.96 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
-.++|.||+||||||+.+.+|=-
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998643
No 395
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.81 E-value=0.001 Score=52.20 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+-+++|.|++||||||+.+.|+-.+
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 396
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.81 E-value=0.0017 Score=46.11 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=24.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---Cc--ceeehh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF---NV--KHIATG 39 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~---~~--~~i~~~ 39 (228)
+|++.|.+|+||||++..|+..+ +. ..++.|
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D 36 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 38999999999999999998877 33 345653
No 397
>KOG0991|consensus
Probab=96.81 E-value=0.0011 Score=52.36 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
++.++|.||||+||||-+..||.++
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHH
Confidence 5679999999999999999999886
No 398
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.80 E-value=0.001 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|++||||||+.+.|+-.+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998754
No 399
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.80 E-value=0.0012 Score=48.18 Aligned_cols=23 Identities=39% Similarity=0.810 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.+|++.|.+||||||+...|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999988654
No 400
>PRK10646 ADP-binding protein; Provisional
Probab=96.79 E-value=0.0015 Score=48.44 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
.+|++.|.-||||||+++.|++.+|+
T Consensus 29 ~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 47999999999999999999999986
No 401
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.79 E-value=0.0053 Score=51.31 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=27.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILR 43 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~ 43 (228)
..++.|+|||||||||+|..++... .+.+|++..-..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 96 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhH
Confidence 4578999999999999998876655 245677655433
No 402
>PRK05642 DNA replication initiation factor; Validated
Probab=96.79 E-value=0.0019 Score=51.63 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILR 43 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~~~ 43 (228)
..++|+|++|+|||.+++.++..+ .+.+++.++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 358999999999999999987654 556788877654
No 403
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.79 E-value=0.0011 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+.+.|+-.+
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4578999999999999999997665
No 404
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.79 E-value=0.0015 Score=61.02 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=28.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
....+++.||||+||||+++.+++.++.+++.
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45689999999999999999999999887653
No 405
>KOG0651|consensus
Probab=96.79 E-value=0.0031 Score=51.82 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=30.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCccee--ehhHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHI--ATGDILRS 44 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i--~~~d~~~~ 44 (228)
.|+.+.|+||||.|||-+|+.++..+++.++ ..+.++.+
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 4667899999999999999999999988554 44444433
No 406
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.78 E-value=0.0011 Score=52.07 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+.+.|+-.+
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999997654
No 407
>KOG1969|consensus
Probab=96.78 E-value=0.0012 Score=59.71 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=27.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
++..++||||.||||+|+.+|+.-|+.++.+
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 4679999999999999999999999988754
No 408
>KOG0727|consensus
Probab=96.78 E-value=0.0043 Score=49.70 Aligned_cols=40 Identities=18% Similarity=0.477 Sum_probs=31.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeeh--hHHHHHHHhc
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIAT--GDILRSHIAQ 48 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~--~d~~~~~~~~ 48 (228)
=|++.||||+|||.+++.+|......+|.+ .+++++.+..
T Consensus 191 gvllygppg~gktml~kava~~t~a~firvvgsefvqkylge 232 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhcc
Confidence 489999999999999999999988777654 3455555443
No 409
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.77 E-value=0.0012 Score=57.31 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=23.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
...|++.||||+|||++|+.|+..+.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 34689999999999999999999884
No 410
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.77 E-value=0.0012 Score=48.98 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~ 29 (228)
+|+++|++||||||+.++|..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998863
No 411
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.77 E-value=0.0012 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999997654
No 412
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.77 E-value=0.0017 Score=46.42 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=25.4
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+|+++.+-|++|+|||.+++.||+.+
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3578899999999999999999999985
No 413
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.77 E-value=0.0013 Score=51.82 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=16.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+|.||||+||||+...+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48999999999998666665554
No 414
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.76 E-value=0.0013 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.696 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.+|+|.|.+||||||++.++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998864
No 415
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.76 E-value=0.0015 Score=57.99 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=25.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVK 34 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~ 34 (228)
.+.-++|+||+|+||||+|+.+++.++..
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34568999999999999999999999763
No 416
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.75 E-value=0.0093 Score=50.42 Aligned_cols=106 Identities=13% Similarity=0.247 Sum_probs=65.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCN 85 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 85 (228)
..+++.|++|||||++...|.+. +..++++.++.... ++.+|.... .++ .-..+...+...+... ...
T Consensus 142 ~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~~-----~qp-sQ~~Fe~~l~~~l~~~~~~~~ 211 (345)
T PRK11784 142 PLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLGG-----PQP-SQKDFENLLAEALLKLDPARP 211 (345)
T ss_pred ceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCCC-----CCc-chHHHHHHHHHHHHcCCCCCe
Confidence 35789999999999999999765 77789987765442 222222110 111 1223444555555554 456
Q ss_pred eEEcC---------CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCcc
Q psy6801 86 YLLDG---------FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWI 130 (228)
Q Consensus 86 ~ildg---------~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 130 (228)
+++++ .|..+ .+.+... -.|++++|.+...+|+..-..
T Consensus 212 i~vE~Es~~IG~~~lP~~l--~~~m~~~-----~~v~i~~~~e~Rv~~l~~~Y~ 258 (345)
T PRK11784 212 IVVEDESRRIGRVHLPEAL--YEAMQQA-----PIVVVEAPLEERVERLLEDYV 258 (345)
T ss_pred EEEEeccccccCccCCHHH--HHHHhhC-----CEEEEECCHHHHHHHHHHHhh
Confidence 77764 23222 2233332 368999999999999988743
No 417
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0011 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+++|.|++||||||+.+.|+-.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999997544
No 418
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0012 Score=51.95 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+.+|+||.||||||++..|+=.-
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999986543
No 419
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0012 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998654
No 420
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.75 E-value=0.0015 Score=55.73 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=24.5
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
|.++.|.|+|++||||||++++|..++
T Consensus 203 ~~~~~~~~~g~~~~GKtt~~~~l~~~l 229 (366)
T PRK14489 203 GAPPLLGVVGYSGTGKTTLLEKLIPEL 229 (366)
T ss_pred CCccEEEEecCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998887
No 421
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.75 E-value=0.0012 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.693 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+|+++|++||||||+.+++...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999988543
No 422
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.75 E-value=0.0014 Score=54.42 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+..|.|.|++||||||++..|+..+
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999988765
No 423
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.74 E-value=0.0016 Score=43.66 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=24.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---Ccceeeh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF---NVKHIAT 38 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~ 38 (228)
++++.|..|+||||++..|+..+ |...+-+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~ 33 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLI 33 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 37899999999999999999887 4444444
No 424
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.74 E-value=0.0013 Score=48.27 Aligned_cols=21 Identities=43% Similarity=0.765 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~ 29 (228)
+|+++|++||||||+.+.|..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998853
No 425
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.74 E-value=0.0016 Score=60.12 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
..++|.||||+||||+|+.+++.++..++.+
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~l 83 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSL 83 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceee
Confidence 3579999999999999999999987766554
No 426
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.73 E-value=0.0014 Score=48.77 Aligned_cols=22 Identities=36% Similarity=0.756 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.+|+|.|++|+||||+.++|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999853
No 427
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.73 E-value=0.0013 Score=51.97 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+-+++|.|++||||||+.+.|+-.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998654
No 428
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.73 E-value=0.0013 Score=51.40 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+.+.|+-.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999997654
No 429
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.73 E-value=0.0014 Score=49.07 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.+|+|.|++||||||+.++|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999998654
No 430
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.72 E-value=0.0015 Score=48.38 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+|.+.|++||||||++..++..+
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999998886
No 431
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0013 Score=52.53 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+.+.|+-.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998654
No 432
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.72 E-value=0.0013 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+.+.|+-.+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4589999999999999999997654
No 433
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.0013 Score=51.33 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.+-+++||+||||||+.+.|-.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHh
Confidence 3679999999999999998843
No 434
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0014 Score=49.83 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-.++|.|+.||||||+.+.|+-.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999997654
No 435
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.72 E-value=0.0014 Score=49.04 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=22.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
....++|+|++|+||||+.+.|....
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45789999999999999999997654
No 436
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0013 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+.+.|+-.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999997654
No 437
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0013 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+-+++|.|+.||||||+.+.|+-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999997654
No 438
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.71 E-value=0.0013 Score=52.00 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|++||||||+.+.|+-.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999997654
No 439
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.71 E-value=0.0016 Score=54.11 Aligned_cols=24 Identities=21% Similarity=0.582 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..|+|+|++||||||+++.|...+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 440
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.71 E-value=0.0012 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4579999999999999999997654
No 441
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.70 E-value=0.0014 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.8
Q ss_pred cceEEEEcCCCCChHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRII 28 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~ 28 (228)
+.+++|.||.||||||+.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4589999999999999999885
No 442
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.70 E-value=0.0014 Score=51.12 Aligned_cols=25 Identities=32% Similarity=0.191 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|++||||||+.+.|+-.+
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999997654
No 443
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.70 E-value=0.0014 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...++|.||.||||||+.+.|+.-+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4688999999999999999998866
No 444
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.70 E-value=0.0017 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.5
Q ss_pred cccceEEEEcCCCCChHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRI 27 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L 27 (228)
+...+|+++|++||||||+.+++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~ 29 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRH 29 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 34568999999999999999654
No 445
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0015 Score=49.93 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+.+.|+-.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999997554
No 446
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0014 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+-+++|.|+.||||||+.+.|+-.+
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999997654
No 447
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0014 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.193 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|.|+.||||||+.+.|+-.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998765
No 448
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.69 E-value=0.0014 Score=52.58 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|.|+.||||||+.+.|+-.+
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999997654
No 449
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.69 E-value=0.0084 Score=50.16 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=26.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGDI 41 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d~ 41 (228)
..++.|+|||||||||+|..++... .+.+|++..-
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~ 94 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA 94 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcccc
Confidence 4478899999999999999987654 3456666443
No 450
>KOG1534|consensus
Probab=96.69 E-value=0.0017 Score=50.46 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=35.8
Q ss_pred HHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCCCCCCCCCCC
Q psy6801 175 TFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIPPLKRLEPRN 226 (228)
Q Consensus 175 ~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~~~~~~~~~~ 226 (228)
.|.+....+.+...+.+.+--+.-+.+ ++-.+.|++.|...++=...+||+-
T Consensus 208 Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~Ed~E~k~ 260 (273)
T KOG1534|consen 208 KFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGEDLEPKE 260 (273)
T ss_pred HHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhccccCccC
Confidence 466666666666666676655666666 8888888888887776666666653
No 451
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.69 E-value=0.0014 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999997654
No 452
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.69 E-value=0.0015 Score=51.34 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+.+.|+-.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998764
No 453
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.68 E-value=0.0029 Score=52.65 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=29.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---C--cceeehhHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF---N--VKHIATGDILRS 44 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~---~--~~~i~~~d~~~~ 44 (228)
-++|.|++|+|||.++..++..+ | +.++.+.+++..
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 48999999999999999999887 3 355677666654
No 454
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.68 E-value=0.0013 Score=51.67 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4589999999999999999997654
No 455
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.68 E-value=0.0017 Score=51.18 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=26.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----Ccceeehh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATG 39 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~ 39 (228)
..++.|.|+|||||||+|..++... ++.+++.+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4578999999999999999998765 33466553
No 456
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.0015 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|.|+.||||||+.+.|+-.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998654
No 457
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.68 E-value=0.0015 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999997654
No 458
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.68 E-value=0.0016 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...|+|+|++||||||+.+.|.+.+
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred ceEEEEECCCccccchHHHHHhhhc
Confidence 4579999999999999999998877
No 459
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.68 E-value=0.0013 Score=55.46 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
..|+|+|++||||||+.+.|...+.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccC
Confidence 5699999999999999999988764
No 460
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.67 E-value=0.0015 Score=51.26 Aligned_cols=25 Identities=36% Similarity=0.267 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999997654
No 461
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.0016 Score=57.86 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=23.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
+..++|+||||+||||+|+.|++.+..
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445799999999999999999999864
No 462
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.67 E-value=0.0016 Score=48.89 Aligned_cols=22 Identities=32% Similarity=0.702 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.+|+++|.|||||||+.+++.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~ 23 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQ 23 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999864
No 463
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.67 E-value=0.0016 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|++||||||+.+.|+-.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999999998765
No 464
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.67 E-value=0.014 Score=46.39 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=21.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...+.+|.|++||||||+.+.+.=-+
T Consensus 33 ~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 33 RGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred CCcEEEEECCCCcCHHHHHHHHhccC
Confidence 45678999999999999999875443
No 465
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.67 E-value=0.0016 Score=55.28 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
-.|+|+||+||||||+.+.|...+
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998876
No 466
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.0015 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999997654
No 467
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.66 E-value=0.0014 Score=55.24 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
-.+++.||+||||||+.+.||=
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999864
No 468
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.66 E-value=0.0016 Score=50.51 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+-+++|.|++||||||+.+.|+-.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999997764
No 469
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.65 E-value=0.0016 Score=49.12 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+++.|+-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999997654
No 470
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.65 E-value=0.0021 Score=47.22 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=25.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
.+-+|++.|.-||||||+++.+++.++.
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 3458999999999999999999999974
No 471
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.65 E-value=0.002 Score=50.39 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=27.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGD 40 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d 40 (228)
....+.|.|+||||||++|..++... ++.+++++.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 34589999999999999999988654 356677643
No 472
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.64 E-value=0.0015 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+|++.|++||||||+..+|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 689999999999999999998765
No 473
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.64 E-value=0.0018 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.+|+++|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999998653
No 474
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.64 E-value=0.0017 Score=49.28 Aligned_cols=22 Identities=18% Similarity=0.557 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.+|+|+|.+|+||||+.+++..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999998874
No 475
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.63 E-value=0.0017 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4579999999999999999997643
No 476
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.63 E-value=0.0016 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998654
No 477
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.63 E-value=0.0017 Score=48.23 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.+|+++|++||||||+.++|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999998654
No 478
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.017 Score=53.58 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|+|+||.|+||||.+.+|+..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4589999999999999999998766
No 479
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.63 E-value=0.0015 Score=51.93 Aligned_cols=22 Identities=32% Similarity=0.672 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
|+|.|+|||||||..+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5899999999999999998884
No 480
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.63 E-value=0.0017 Score=51.20 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+.+.|+-.+
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999998654
No 481
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.63 E-value=0.021 Score=51.93 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
.+..++|.|++|+||||+++.|++.++.
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3445799999999999999999999986
No 482
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.0017 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+++|.|++||||||+.+.|+-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999984
No 483
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.62 E-value=0.0018 Score=48.50 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.+|+|.|++||||||+..+|..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~ 23 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYAD 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999864
No 484
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.0021 Score=58.30 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
+..++|+||+|+||||+|+.||+.+++
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456799999999999999999999976
No 485
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.62 E-value=0.0017 Score=51.87 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999998654
No 486
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.62 E-value=0.0016 Score=47.82 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q psy6801 10 AVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~ 30 (228)
|+|+|++||||||+.++|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999653
No 487
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.62 E-value=0.0017 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+-+++|.|+.||||||+.+.|+-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998654
No 488
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.62 E-value=0.0018 Score=49.14 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+.+.|+-.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4578999999999999999998654
No 489
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.61 E-value=0.0019 Score=48.51 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.+|+|+|++|+||||+..++..
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~ 25 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSE 25 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 5799999999999999999864
No 490
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.61 E-value=0.0017 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+-+++|.|+.||||||+.+.|+-.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999997654
No 491
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.0021 Score=55.51 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=24.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
+.-++|.||+|+||||+|..+++.+..
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345889999999999999999999976
No 492
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.60 E-value=0.002 Score=52.02 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
.+.+++|+|++|+||||+++.+++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 4568999999999999999999987643
No 493
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.60 E-value=0.0019 Score=49.24 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|++||||||+.+.|+-.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3578999999999999999997654
No 494
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.60 E-value=0.0017 Score=52.02 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+++|.|+.||||||+.+.|+-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999765
No 495
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.60 E-value=0.0018 Score=51.98 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|++||||||+.+.|+-.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998654
No 496
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.60 E-value=0.002 Score=48.12 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~ 29 (228)
+|++.|.+||||||+.+++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998854
No 497
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.60 E-value=0.0019 Score=48.62 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+.||||||+.+.|+-.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999997654
No 498
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.0016 Score=60.90 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=24.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVK 34 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~ 34 (228)
.+..++|+||+|+||||+|+.|++.++..
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 34457899999999999999999999763
No 499
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.0023 Score=54.44 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=27.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----CcceeehhH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATGD 40 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~d 40 (228)
+.+++|+||.||||||++..|+..+ .+.+++.|.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 5578999999999999999998766 244567643
No 500
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.60 E-value=0.002 Score=47.63 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~ 29 (228)
+|+|+|++|+||||+.++|..
T Consensus 2 ki~i~G~~~~GKStli~~l~~ 22 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVE 22 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998865
Done!