Query psy6801
Match_columns 228
No_of_seqs 127 out of 1645
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 18:45:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gmt_A Adenylate kinase; ssgci 100.0 2.3E-45 7.8E-50 288.8 22.2 208 7-214 8-229 (230)
2 3sr0_A Adenylate kinase; phosp 100.0 8.7E-44 3E-48 277.6 22.5 199 8-214 1-204 (206)
3 3tlx_A Adenylate kinase 2; str 100.0 4.4E-39 1.5E-43 257.8 23.4 208 6-213 28-242 (243)
4 3umf_A Adenylate kinase; rossm 100.0 8.6E-39 2.9E-43 250.6 21.2 183 5-214 27-213 (217)
5 3dl0_A Adenylate kinase; phosp 100.0 1E-37 3.6E-42 245.3 24.3 207 8-214 1-214 (216)
6 3fb4_A Adenylate kinase; psych 100.0 3.4E-37 1.2E-41 242.3 24.3 207 8-214 1-214 (216)
7 3be4_A Adenylate kinase; malar 100.0 8.9E-37 3.1E-41 240.4 22.9 206 7-212 5-217 (217)
8 1e4v_A Adenylate kinase; trans 100.0 1.2E-35 4E-40 233.5 21.8 205 8-212 1-213 (214)
9 1ak2_A Adenylate kinase isoenz 100.0 1.2E-34 4E-39 230.6 26.4 210 6-215 15-231 (233)
10 1zd8_A GTP:AMP phosphotransfer 100.0 7.5E-35 2.6E-39 230.8 24.2 219 1-221 1-221 (227)
11 1aky_A Adenylate kinase; ATP:A 100.0 7.6E-34 2.6E-38 224.0 24.9 209 6-214 3-219 (220)
12 2xb4_A Adenylate kinase; ATP-b 100.0 1.1E-34 3.9E-39 229.3 19.9 205 8-212 1-222 (223)
13 1zak_A Adenylate kinase; ATP:A 100.0 2.6E-31 8.9E-36 209.7 21.7 204 7-216 5-212 (222)
14 2c95_A Adenylate kinase 1; tra 100.0 2.8E-27 9.7E-32 182.6 21.4 185 5-216 7-195 (196)
15 1qf9_A UMP/CMP kinase, protein 100.0 1.3E-26 4.5E-31 178.3 22.0 186 1-214 1-191 (194)
16 2bwj_A Adenylate kinase 5; pho 100.0 4.4E-27 1.5E-31 181.9 19.0 184 6-216 11-198 (199)
17 1ukz_A Uridylate kinase; trans 99.9 4.8E-26 1.6E-30 176.9 21.7 183 6-215 14-202 (203)
18 2bbw_A Adenylate kinase 4, AK4 99.9 1.7E-25 5.9E-30 179.0 25.1 214 6-220 26-240 (246)
19 3cm0_A Adenylate kinase; ATP-b 99.9 3.5E-26 1.2E-30 175.2 19.9 179 5-213 2-185 (186)
20 2cdn_A Adenylate kinase; phosp 99.9 7.5E-26 2.6E-30 175.7 21.4 176 5-213 18-200 (201)
21 1tev_A UMP-CMP kinase; ploop, 99.9 8E-26 2.7E-30 174.1 21.3 183 5-214 1-194 (196)
22 3lw7_A Adenylate kinase relate 99.8 3E-19 1E-23 134.6 17.0 171 8-216 2-178 (179)
23 4hlc_A DTMP kinase, thymidylat 99.8 2E-18 6.7E-23 134.2 16.5 171 8-218 3-204 (205)
24 2pbr_A DTMP kinase, thymidylat 99.8 1E-17 3.6E-22 128.5 18.8 163 8-217 1-194 (195)
25 4edh_A DTMP kinase, thymidylat 99.8 3.9E-18 1.3E-22 133.3 16.2 174 3-217 2-209 (213)
26 4eaq_A DTMP kinase, thymidylat 99.8 1.2E-17 4E-22 132.1 17.6 175 5-218 24-228 (229)
27 3lv8_A DTMP kinase, thymidylat 99.8 8.1E-19 2.8E-23 139.0 10.1 180 3-220 23-234 (236)
28 3v9p_A DTMP kinase, thymidylat 99.8 1.5E-18 5.2E-23 136.6 11.6 173 4-214 22-226 (227)
29 4tmk_A Protein (thymidylate ki 99.8 1.5E-18 5E-23 135.6 9.6 175 5-218 1-210 (213)
30 3vaa_A Shikimate kinase, SK; s 99.8 2E-17 6.8E-22 127.9 14.4 168 6-216 24-197 (199)
31 2z0h_A DTMP kinase, thymidylat 99.8 7.1E-17 2.4E-21 124.1 17.1 164 9-217 2-194 (197)
32 2wwf_A Thymidilate kinase, put 99.8 1E-18 3.5E-23 136.1 6.8 173 1-215 3-200 (212)
33 3t61_A Gluconokinase; PSI-biol 99.7 7.3E-17 2.5E-21 124.9 16.3 158 7-214 18-179 (202)
34 2plr_A DTMP kinase, probable t 99.7 4.4E-17 1.5E-21 126.6 13.6 184 5-216 2-209 (213)
35 2v54_A DTMP kinase, thymidylat 99.7 7.2E-17 2.5E-21 124.8 14.3 169 5-219 2-195 (204)
36 3hjn_A DTMP kinase, thymidylat 99.7 2.4E-16 8.3E-21 121.7 16.8 165 8-217 1-194 (197)
37 1kht_A Adenylate kinase; phosp 99.7 1.2E-16 4.1E-21 122.2 14.8 113 6-127 2-135 (192)
38 3kb2_A SPBC2 prophage-derived 99.7 2.4E-16 8.1E-21 118.6 15.8 152 8-218 2-170 (173)
39 3trf_A Shikimate kinase, SK; a 99.7 1.6E-16 5.6E-21 121.1 14.8 169 7-220 5-180 (185)
40 1nks_A Adenylate kinase; therm 99.7 2.6E-16 9E-21 120.4 15.4 165 8-212 2-193 (194)
41 2rhm_A Putative kinase; P-loop 99.7 3.2E-17 1.1E-21 125.6 10.3 121 4-128 2-125 (193)
42 1nn5_A Similar to deoxythymidy 99.7 1.2E-16 4.3E-21 124.4 12.6 173 4-217 6-203 (215)
43 1ly1_A Polynucleotide kinase; 99.7 3.4E-16 1.2E-20 118.6 14.6 159 7-214 2-172 (181)
44 2iyv_A Shikimate kinase, SK; t 99.7 1.6E-16 5.6E-21 121.1 12.0 109 7-128 2-114 (184)
45 3tmk_A Thymidylate kinase; pho 99.7 7.3E-16 2.5E-20 120.4 15.4 173 6-218 4-206 (216)
46 3ld9_A DTMP kinase, thymidylat 99.7 9.4E-17 3.2E-21 125.9 9.8 171 5-216 19-217 (223)
47 1e6c_A Shikimate kinase; phosp 99.7 7.5E-15 2.5E-19 110.5 18.6 161 7-213 2-169 (173)
48 2pt5_A Shikimate kinase, SK; a 99.7 4.4E-16 1.5E-20 116.8 11.5 109 8-128 1-113 (168)
49 1jjv_A Dephospho-COA kinase; P 99.7 2E-15 6.8E-20 117.1 15.1 163 7-215 2-197 (206)
50 1vht_A Dephospho-COA kinase; s 99.7 1E-15 3.5E-20 119.8 12.5 165 6-216 3-196 (218)
51 3iij_A Coilin-interacting nucl 99.7 4.4E-16 1.5E-20 118.3 9.8 110 4-128 8-117 (180)
52 1y63_A LMAJ004144AAA protein; 99.7 1.6E-15 5.4E-20 115.8 12.6 110 5-128 8-121 (184)
53 1via_A Shikimate kinase; struc 99.6 7E-16 2.4E-20 116.7 9.8 107 8-128 5-113 (175)
54 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 5.6E-16 1.9E-20 124.7 9.5 161 7-216 4-175 (260)
55 1knq_A Gluconate kinase; ALFA/ 99.6 3.1E-14 1.1E-18 107.4 18.4 161 1-213 1-172 (175)
56 4eun_A Thermoresistant glucoki 99.6 1.4E-14 4.8E-19 111.9 16.4 159 6-215 28-194 (200)
57 1zuh_A Shikimate kinase; alpha 99.6 1.6E-15 5.4E-20 113.9 9.8 107 6-128 6-117 (168)
58 2vli_A Antibiotic resistance p 99.6 2E-14 6.9E-19 109.1 15.7 159 5-217 3-174 (183)
59 2if2_A Dephospho-COA kinase; a 99.6 4.7E-15 1.6E-19 114.7 11.2 162 8-216 2-193 (204)
60 1cke_A CK, MSSA, protein (cyti 99.6 1.3E-14 4.3E-19 114.0 13.6 40 7-46 5-44 (227)
61 2jaq_A Deoxyguanosine kinase; 99.6 5E-14 1.7E-18 108.6 15.0 166 8-216 1-202 (205)
62 3nwj_A ATSK2; P loop, shikimat 99.6 1.8E-14 6.3E-19 115.0 12.3 175 6-217 47-239 (250)
63 2f6r_A COA synthase, bifunctio 99.6 2.7E-14 9.3E-19 116.1 13.2 164 7-216 75-270 (281)
64 4i1u_A Dephospho-COA kinase; s 99.6 3.7E-14 1.3E-18 109.9 13.3 164 7-215 9-202 (210)
65 1uf9_A TT1252 protein; P-loop, 99.6 1.8E-14 6.1E-19 111.1 11.0 167 1-217 1-196 (203)
66 1kag_A SKI, shikimate kinase I 99.6 6.4E-14 2.2E-18 105.4 12.7 111 7-128 4-117 (173)
67 1ltq_A Polynucleotide kinase; 99.5 1.5E-14 5.1E-19 118.5 9.1 118 7-128 2-126 (301)
68 2qt1_A Nicotinamide riboside k 99.5 3E-15 1E-19 116.2 4.5 167 6-215 20-206 (207)
69 2qor_A Guanylate kinase; phosp 99.5 4.2E-13 1.4E-17 103.9 16.2 157 6-220 11-202 (204)
70 3ake_A Cytidylate kinase; CMP 99.5 3.6E-13 1.2E-17 104.1 15.6 38 9-46 4-41 (208)
71 1uj2_A Uridine-cytidine kinase 99.5 6.5E-15 2.2E-19 117.9 4.8 172 6-218 21-237 (252)
72 2h92_A Cytidylate kinase; ross 99.5 1.2E-13 4.2E-18 107.8 9.5 41 5-45 1-41 (219)
73 3fdi_A Uncharacterized protein 99.5 2.4E-12 8.1E-17 99.5 16.5 115 4-128 3-137 (201)
74 4e22_A Cytidylate kinase; P-lo 99.5 1.4E-12 4.7E-17 104.3 15.5 39 7-45 27-65 (252)
75 3hdt_A Putative kinase; struct 99.5 2.9E-12 9.9E-17 100.5 15.4 39 7-46 14-52 (223)
76 1q3t_A Cytidylate kinase; nucl 99.5 1.1E-12 3.8E-17 103.8 13.2 41 5-45 14-54 (236)
77 1qhx_A CPT, protein (chloramph 99.5 9.8E-13 3.3E-17 99.3 12.3 116 6-128 2-133 (178)
78 3r20_A Cytidylate kinase; stru 99.4 2E-12 6.8E-17 101.9 14.0 41 5-45 7-47 (233)
79 1m7g_A Adenylylsulfate kinase; 99.4 2.2E-13 7.7E-18 106.0 8.5 109 6-125 24-149 (211)
80 2yvu_A Probable adenylyl-sulfa 99.4 9.4E-13 3.2E-17 100.3 10.5 112 5-127 11-132 (186)
81 1p5z_B DCK, deoxycytidine kina 99.4 2E-13 6.8E-18 109.8 6.7 31 6-36 23-54 (263)
82 1gvn_B Zeta; postsegregational 99.4 2.5E-12 8.5E-17 104.8 12.3 118 5-129 31-163 (287)
83 2grj_A Dephospho-COA kinase; T 99.4 2.5E-12 8.6E-17 98.6 10.6 42 7-48 12-53 (192)
84 1x6v_B Bifunctional 3'-phospho 99.3 2.2E-11 7.4E-16 108.3 11.7 113 5-127 50-171 (630)
85 2p5t_B PEZT; postsegregational 99.3 2.7E-12 9.3E-17 102.7 5.4 119 5-129 30-158 (253)
86 2pez_A Bifunctional 3'-phospho 99.3 1.9E-11 6.6E-16 92.4 9.6 113 5-128 3-125 (179)
87 2vp4_A Deoxynucleoside kinase; 99.3 2.8E-11 9.5E-16 95.4 10.6 82 105-218 144-228 (230)
88 3zvl_A Bifunctional polynucleo 99.2 2.5E-11 8.4E-16 103.9 10.0 98 6-129 257-358 (416)
89 1gtv_A TMK, thymidylate kinase 99.2 1.5E-13 5.2E-18 106.8 -5.0 26 8-33 1-26 (214)
90 2ocp_A DGK, deoxyguanosine kin 99.2 2.5E-11 8.4E-16 96.3 7.0 27 7-33 2-29 (241)
91 3uie_A Adenylyl-sulfate kinase 99.2 9.4E-10 3.2E-14 84.6 15.7 110 6-125 24-140 (200)
92 3tr0_A Guanylate kinase, GMP k 99.2 4.9E-10 1.7E-14 86.2 12.9 28 5-32 5-32 (205)
93 2gks_A Bifunctional SAT/APS ki 99.2 1.9E-10 6.5E-15 101.4 11.1 112 7-127 372-489 (546)
94 2j41_A Guanylate kinase; GMP, 99.1 7E-11 2.4E-15 91.0 5.5 165 5-215 4-187 (207)
95 3tau_A Guanylate kinase, GMP k 99.1 3.5E-10 1.2E-14 87.6 9.0 165 6-215 7-189 (208)
96 2ze6_A Isopentenyl transferase 99.1 2.4E-10 8.3E-15 91.3 7.6 119 8-129 2-139 (253)
97 1ex7_A Guanylate kinase; subst 99.0 9.7E-10 3.3E-14 83.6 9.0 162 10-214 4-184 (186)
98 1m8p_A Sulfate adenylyltransfe 99.0 5.7E-10 2E-14 98.8 8.1 110 6-126 395-514 (573)
99 2axn_A 6-phosphofructo-2-kinas 99.0 3.4E-09 1.2E-13 93.0 10.9 117 6-128 34-168 (520)
100 1zp6_A Hypothetical protein AT 98.9 1.4E-08 4.8E-13 77.1 11.7 114 1-128 3-126 (191)
101 3a00_A Guanylate kinase, GMP k 98.9 5.1E-09 1.7E-13 79.6 9.0 164 8-214 2-184 (186)
102 2bdt_A BH3686; alpha-beta prot 98.9 3.1E-08 1E-12 75.2 13.3 110 7-128 2-122 (189)
103 1p6x_A Thymidine kinase; P-loo 98.9 5.8E-09 2E-13 86.2 9.7 30 4-33 4-33 (334)
104 3ch4_B Pmkase, phosphomevalona 98.9 6.5E-09 2.2E-13 79.6 9.0 116 7-125 11-144 (202)
105 3asz_A Uridine kinase; cytidin 98.8 3.3E-08 1.1E-12 76.3 9.8 38 5-42 4-43 (211)
106 1osn_A Thymidine kinase, VZV-T 98.7 7.8E-08 2.7E-12 79.6 11.3 29 5-33 10-39 (341)
107 3a8t_A Adenylate isopentenyltr 98.7 1.1E-08 3.6E-13 84.5 4.5 34 8-41 41-74 (339)
108 2jeo_A Uridine-cytidine kinase 98.7 5.5E-07 1.9E-11 71.2 13.3 29 6-34 24-52 (245)
109 3czq_A Putative polyphosphate 98.6 1.1E-07 3.7E-12 77.2 9.1 167 6-217 85-281 (304)
110 3lnc_A Guanylate kinase, GMP k 98.6 1.6E-07 5.4E-12 73.6 9.9 25 7-31 27-52 (231)
111 3d3q_A TRNA delta(2)-isopenten 98.6 1.1E-08 3.8E-13 84.6 3.1 41 1-41 1-41 (340)
112 1rz3_A Hypothetical protein rb 98.6 5.5E-08 1.9E-12 74.7 6.2 112 6-128 21-164 (201)
113 1of1_A Thymidine kinase; trans 98.6 3.1E-07 1E-11 76.8 10.1 29 4-32 46-74 (376)
114 1e2k_A Thymidine kinase; trans 98.6 2.3E-07 7.7E-12 76.6 9.0 28 5-32 2-29 (331)
115 1kgd_A CASK, peripheral plasma 98.5 2.8E-07 9.7E-12 69.5 8.5 28 5-32 3-30 (180)
116 1bif_A 6-phosphofructo-2-kinas 98.5 4.3E-07 1.5E-11 78.7 10.5 113 6-128 38-172 (469)
117 3cr8_A Sulfate adenylyltranfer 98.5 2.6E-07 8.8E-12 81.4 7.9 37 6-42 368-410 (552)
118 3tqc_A Pantothenate kinase; bi 98.5 7.1E-09 2.4E-13 85.4 -2.0 36 6-41 91-133 (321)
119 3c8u_A Fructokinase; YP_612366 98.5 1.5E-07 5.2E-12 72.6 5.3 35 7-41 22-61 (208)
120 1s96_A Guanylate kinase, GMP k 98.4 9.9E-06 3.4E-10 63.0 14.4 165 5-214 14-197 (219)
121 3crm_A TRNA delta(2)-isopenten 98.4 1.5E-07 5.1E-12 77.3 3.4 35 7-41 5-39 (323)
122 3foz_A TRNA delta(2)-isopenten 98.4 2.2E-07 7.5E-12 75.7 4.1 37 5-41 8-44 (316)
123 1lvg_A Guanylate kinase, GMP k 98.3 2.4E-05 8.4E-10 59.7 14.4 25 7-31 4-28 (198)
124 1a7j_A Phosphoribulokinase; tr 98.3 2.2E-07 7.5E-12 75.6 2.0 38 6-43 4-46 (290)
125 3ney_A 55 kDa erythrocyte memb 98.3 1.4E-05 4.8E-10 61.1 11.8 28 5-32 17-44 (197)
126 3exa_A TRNA delta(2)-isopenten 98.3 4.8E-07 1.6E-11 73.9 3.8 37 5-41 1-37 (322)
127 4gp7_A Metallophosphoesterase; 98.2 1.6E-05 5.3E-10 59.3 11.5 110 7-128 9-121 (171)
128 3czp_A Putative polyphosphate 98.2 2.2E-06 7.6E-11 74.4 7.5 166 6-216 299-494 (500)
129 3czp_A Putative polyphosphate 98.2 2.3E-06 7.9E-11 74.3 7.1 170 6-217 42-238 (500)
130 1dek_A Deoxynucleoside monopho 98.1 2.2E-06 7.4E-11 67.7 5.0 40 8-47 2-41 (241)
131 3rhf_A Putative polyphosphate 97.9 3.6E-05 1.2E-09 61.7 8.3 163 6-215 74-268 (289)
132 3t15_A Ribulose bisphosphate c 97.9 6.5E-06 2.2E-10 66.9 3.9 33 6-38 35-67 (293)
133 3eph_A TRNA isopentenyltransfe 97.9 7E-06 2.4E-10 69.2 3.9 33 8-40 3-35 (409)
134 4b4t_M 26S protease regulatory 97.8 1.3E-05 4.3E-10 68.5 4.3 32 7-38 215-246 (434)
135 4b4t_J 26S protease regulatory 97.8 1.5E-05 5.1E-10 67.3 4.2 32 7-38 182-213 (405)
136 4b4t_K 26S protease regulatory 97.8 1.6E-05 5.4E-10 67.9 4.3 32 7-38 206-237 (428)
137 4b4t_L 26S protease subunit RP 97.8 1.6E-05 5.4E-10 68.0 4.3 32 7-38 215-246 (437)
138 1lv7_A FTSH; alpha/beta domain 97.7 2.1E-05 7.3E-10 62.3 4.3 32 7-38 45-76 (257)
139 1g8f_A Sulfate adenylyltransfe 97.7 1.4E-05 4.6E-10 69.7 3.3 35 6-40 394-435 (511)
140 1sq5_A Pantothenate kinase; P- 97.7 1.9E-05 6.7E-10 64.5 3.9 36 6-41 79-121 (308)
141 3ec2_A DNA replication protein 97.7 3.5E-05 1.2E-09 57.6 5.0 37 7-43 38-80 (180)
142 2qmh_A HPR kinase/phosphorylas 97.7 2E-05 6.9E-10 60.1 3.6 33 7-40 34-66 (205)
143 2qz4_A Paraplegin; AAA+, SPG7, 97.7 2.8E-05 9.4E-10 61.5 4.3 32 7-38 39-70 (262)
144 4b4t_H 26S protease regulatory 97.7 2.4E-05 8.2E-10 67.0 3.9 32 7-38 243-274 (467)
145 4b4t_I 26S protease regulatory 97.7 3E-05 1E-09 65.8 4.3 32 7-38 216-247 (437)
146 2ga8_A Hypothetical 39.9 kDa p 97.7 6.6E-06 2.3E-10 68.3 0.3 28 8-35 25-52 (359)
147 1ye8_A Protein THEP1, hypothet 97.7 2.8E-05 9.5E-10 58.5 3.7 27 8-34 1-27 (178)
148 1g41_A Heat shock protein HSLU 97.7 3.4E-05 1.2E-09 66.1 4.6 33 7-39 50-82 (444)
149 1odf_A YGR205W, hypothetical 3 97.7 2.5E-05 8.4E-10 63.4 3.6 37 6-42 30-74 (290)
150 3cf0_A Transitional endoplasmi 97.7 3.2E-05 1.1E-09 62.9 4.2 38 7-44 49-88 (301)
151 1kjw_A Postsynaptic density pr 97.6 0.00023 7.8E-09 57.8 9.0 157 6-215 104-282 (295)
152 3cf2_A TER ATPase, transitiona 97.6 8.8E-05 3E-09 67.9 7.2 32 7-38 238-269 (806)
153 3h4m_A Proteasome-activating n 97.6 3.7E-05 1.3E-09 61.7 4.3 32 7-38 51-82 (285)
154 3b9p_A CG5977-PA, isoform A; A 97.6 3.6E-05 1.2E-09 62.2 4.2 32 7-38 54-85 (297)
155 3hws_A ATP-dependent CLP prote 97.6 3.5E-05 1.2E-09 64.3 4.1 32 7-38 51-82 (363)
156 2x8a_A Nuclear valosin-contain 97.6 3.7E-05 1.3E-09 61.8 3.9 29 9-37 46-74 (274)
157 1d2n_A N-ethylmaleimide-sensit 97.6 4.6E-05 1.6E-09 60.9 4.2 32 7-38 64-95 (272)
158 3eie_A Vacuolar protein sortin 97.6 4.9E-05 1.7E-09 62.4 4.3 32 7-38 51-82 (322)
159 1np6_A Molybdopterin-guanine d 97.5 5.6E-05 1.9E-09 56.6 3.7 26 6-31 5-30 (174)
160 1ofh_A ATP-dependent HSL prote 97.5 6.3E-05 2.1E-09 60.9 4.2 31 7-37 50-80 (310)
161 1ixz_A ATP-dependent metallopr 97.5 6.3E-05 2.2E-09 59.4 3.9 30 9-38 51-80 (254)
162 2r62_A Cell division protease 97.5 3.1E-05 1.1E-09 61.7 2.0 32 7-38 44-75 (268)
163 1um8_A ATP-dependent CLP prote 97.5 6.6E-05 2.3E-09 62.9 4.1 31 8-38 73-103 (376)
164 1xwi_A SKD1 protein; VPS4B, AA 97.5 7.3E-05 2.5E-09 61.5 4.2 30 8-37 46-76 (322)
165 3cf2_A TER ATPase, transitiona 97.5 0.0002 6.8E-09 65.6 7.4 115 7-128 511-659 (806)
166 1xjc_A MOBB protein homolog; s 97.5 7.1E-05 2.4E-09 55.7 3.7 25 7-31 4-28 (169)
167 1jbk_A CLPB protein; beta barr 97.5 9E-05 3.1E-09 55.1 4.3 25 7-31 43-67 (195)
168 2qp9_X Vacuolar protein sortin 97.5 7.9E-05 2.7E-09 62.1 4.2 31 8-38 85-115 (355)
169 1in4_A RUVB, holliday junction 97.5 8.1E-05 2.8E-09 61.4 4.2 28 8-35 52-79 (334)
170 2w58_A DNAI, primosome compone 97.5 0.00014 4.9E-09 55.2 5.2 36 8-43 55-95 (202)
171 2p65_A Hypothetical protein PF 97.4 8.3E-05 2.8E-09 55.2 3.3 25 7-31 43-67 (187)
172 3d8b_A Fidgetin-like protein 1 97.4 0.00011 3.6E-09 61.3 4.3 32 7-38 117-148 (357)
173 1iy2_A ATP-dependent metallopr 97.4 0.00011 3.6E-09 59.0 3.9 30 9-38 75-104 (278)
174 2c9o_A RUVB-like 1; hexameric 97.4 0.00011 3.9E-09 63.2 4.3 31 8-38 64-96 (456)
175 1tue_A Replication protein E1; 97.4 8.2E-05 2.8E-09 57.0 2.8 29 9-37 60-88 (212)
176 1z6g_A Guanylate kinase; struc 97.4 0.00011 3.9E-09 56.8 3.6 26 6-31 22-47 (218)
177 2ce7_A Cell division protein F 97.3 0.00015 5E-09 62.8 4.4 32 7-38 49-80 (476)
178 2f1r_A Molybdopterin-guanine d 97.3 5.8E-05 2E-09 56.3 1.5 26 7-32 2-27 (171)
179 3syl_A Protein CBBX; photosynt 97.3 0.00013 4.3E-09 59.2 3.6 23 9-31 69-91 (309)
180 3n70_A Transport activator; si 97.3 0.00013 4.4E-09 52.7 3.3 24 8-31 25-48 (145)
181 3bos_A Putative DNA replicatio 97.3 0.00014 4.8E-09 56.3 3.7 34 7-40 52-90 (242)
182 3aez_A Pantothenate kinase; tr 97.3 0.00013 4.6E-09 59.7 3.7 26 6-31 89-114 (312)
183 3pfi_A Holliday junction ATP-d 97.3 0.00017 5.7E-09 59.3 4.2 31 8-38 56-86 (338)
184 3vfd_A Spastin; ATPase, microt 97.3 0.00017 5.9E-09 60.7 4.3 32 7-38 148-179 (389)
185 1sxj_A Activator 1 95 kDa subu 97.3 0.00017 5.7E-09 63.2 4.3 32 7-38 77-108 (516)
186 3dm5_A SRP54, signal recogniti 97.3 0.00027 9.2E-09 60.4 5.4 25 7-31 100-124 (443)
187 2orw_A Thymidine kinase; TMTK, 97.3 0.00017 5.7E-09 54.4 3.6 26 6-31 2-27 (184)
188 1znw_A Guanylate kinase, GMP k 97.3 0.00018 6.1E-09 55.1 3.6 26 7-32 20-45 (207)
189 1svm_A Large T antigen; AAA+ f 97.3 0.00022 7.6E-09 59.8 4.4 31 7-37 169-199 (377)
190 1c9k_A COBU, adenosylcobinamid 97.2 0.00015 5.3E-09 54.4 3.0 24 10-34 2-25 (180)
191 2y8e_A RAB-protein 6, GH09086P 97.2 0.00016 5.5E-09 53.2 3.1 26 4-29 11-36 (179)
192 2zan_A Vacuolar protein sortin 97.2 0.00021 7.3E-09 61.3 4.2 35 8-42 168-205 (444)
193 2kjq_A DNAA-related protein; s 97.2 0.00018 6.1E-09 52.3 3.2 25 7-31 36-60 (149)
194 1l8q_A Chromosomal replication 97.2 0.00024 8.2E-09 58.1 4.2 35 8-42 38-77 (324)
195 3pvs_A Replication-associated 97.2 0.00022 7.6E-09 61.3 4.1 30 9-38 52-81 (447)
196 1njg_A DNA polymerase III subu 97.2 0.00025 8.6E-09 54.6 3.7 26 8-33 46-71 (250)
197 2wji_A Ferrous iron transport 97.2 0.00024 8.1E-09 52.1 3.3 24 6-29 2-25 (165)
198 2r2a_A Uncharacterized protein 97.2 0.00026 9E-09 54.1 3.6 24 7-30 5-28 (199)
199 2ce2_X GTPase HRAS; signaling 97.2 0.00025 8.5E-09 51.3 3.3 25 6-30 2-26 (166)
200 3kfv_A Tight junction protein 97.2 0.0036 1.2E-07 50.8 10.4 91 9-128 147-239 (308)
201 1hqc_A RUVB; extended AAA-ATPa 97.1 0.00026 9E-09 57.7 3.6 29 8-36 39-67 (324)
202 1kao_A RAP2A; GTP-binding prot 97.1 0.00028 9.7E-09 51.1 3.4 26 5-30 1-26 (167)
203 2r44_A Uncharacterized protein 97.1 0.0002 6.8E-09 58.8 2.8 29 8-36 47-75 (331)
204 3co5_A Putative two-component 97.1 8.7E-05 3E-09 53.5 0.6 28 8-36 28-55 (143)
205 2chg_A Replication factor C sm 97.1 0.00028 9.5E-09 53.7 3.4 23 9-31 40-62 (226)
206 2xkx_A Disks large homolog 4; 97.1 0.012 4E-07 53.6 14.5 160 6-215 530-708 (721)
207 2i3b_A HCR-ntpase, human cance 97.1 0.00033 1.1E-08 53.1 3.6 24 8-31 2-25 (189)
208 3m6a_A ATP-dependent protease 97.1 0.00036 1.2E-08 61.4 4.3 31 7-37 108-138 (543)
209 3uk6_A RUVB-like 2; hexameric 97.1 0.00032 1.1E-08 58.3 3.7 26 8-33 71-96 (368)
210 1htw_A HI0065; nucleotide-bind 97.1 0.00036 1.2E-08 51.3 3.5 25 7-31 33-57 (158)
211 2ehv_A Hypothetical protein PH 97.1 0.00029 9.8E-09 55.1 3.2 22 7-28 30-51 (251)
212 2dhr_A FTSH; AAA+ protein, hex 97.1 0.00041 1.4E-08 60.4 4.4 32 7-38 64-95 (499)
213 4a74_A DNA repair and recombin 97.1 0.00029 1E-08 54.3 3.1 25 7-31 25-49 (231)
214 2wjg_A FEOB, ferrous iron tran 97.1 0.00038 1.3E-08 51.8 3.6 26 5-30 5-30 (188)
215 2v1u_A Cell division control p 97.1 0.00032 1.1E-08 58.3 3.5 25 7-31 44-68 (387)
216 3te6_A Regulatory protein SIR3 97.1 0.00027 9.1E-09 58.0 2.9 26 6-31 44-69 (318)
217 3hu3_A Transitional endoplasmi 97.1 0.00041 1.4E-08 60.3 4.2 32 7-38 238-269 (489)
218 2fn4_A P23, RAS-related protei 97.0 0.00038 1.3E-08 51.2 3.4 26 5-30 7-32 (181)
219 1c1y_A RAS-related protein RAP 97.0 0.0004 1.4E-08 50.4 3.4 25 5-29 1-25 (167)
220 2eyu_A Twitching motility prot 97.0 0.00041 1.4E-08 55.3 3.6 25 7-31 25-49 (261)
221 2qby_B CDC6 homolog 3, cell di 97.0 0.00045 1.5E-08 57.6 4.1 25 7-31 45-69 (384)
222 1u8z_A RAS-related protein RAL 97.0 0.00043 1.5E-08 50.2 3.4 26 5-30 2-27 (168)
223 2dyk_A GTP-binding protein; GT 97.0 0.00043 1.5E-08 50.0 3.4 23 8-30 2-24 (161)
224 1rj9_A FTSY, signal recognitio 97.0 0.00042 1.4E-08 56.4 3.7 25 7-31 102-126 (304)
225 3u61_B DNA polymerase accessor 97.0 0.00042 1.4E-08 56.6 3.7 32 7-38 48-79 (324)
226 1vma_A Cell division protein F 97.0 0.00043 1.5E-08 56.5 3.7 25 7-31 104-128 (306)
227 2a9k_A RAS-related protein RAL 97.0 0.00043 1.5E-08 51.2 3.4 26 5-30 16-41 (187)
228 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00046 1.6E-08 50.7 3.5 28 2-29 2-29 (177)
229 2qby_A CDC6 homolog 1, cell di 97.0 0.0005 1.7E-08 57.0 4.0 32 7-38 45-82 (386)
230 1fnn_A CDC6P, cell division co 97.0 0.00056 1.9E-08 57.0 4.2 23 9-31 46-68 (389)
231 4fcw_A Chaperone protein CLPB; 97.0 0.00043 1.5E-08 56.1 3.4 23 9-31 49-71 (311)
232 2v9p_A Replication protein E1; 97.0 0.0005 1.7E-08 56.0 3.7 25 7-31 126-150 (305)
233 3tif_A Uncharacterized ABC tra 97.0 0.00036 1.2E-08 54.7 2.7 25 7-31 31-55 (235)
234 2qgz_A Helicase loader, putati 96.9 0.00065 2.2E-08 55.4 4.2 38 7-44 152-195 (308)
235 3tqf_A HPR(Ser) kinase; transf 96.9 0.00059 2E-08 50.7 3.6 30 8-38 17-46 (181)
236 3e70_C DPA, signal recognition 96.9 0.00052 1.8E-08 56.5 3.7 26 6-31 128-153 (328)
237 3pxg_A Negative regulator of g 96.9 0.00052 1.8E-08 59.3 3.8 24 8-31 202-225 (468)
238 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00055 1.9E-08 52.7 3.6 25 7-31 23-47 (235)
239 3b9q_A Chloroplast SRP recepto 96.9 0.00055 1.9E-08 55.7 3.7 25 7-31 100-124 (302)
240 3b85_A Phosphate starvation-in 96.9 0.00045 1.6E-08 53.1 2.9 24 7-30 22-45 (208)
241 1ek0_A Protein (GTP-binding pr 96.9 0.00058 2E-08 49.6 3.3 25 6-30 2-26 (170)
242 2onk_A Molybdate/tungstate ABC 96.9 0.00051 1.7E-08 54.0 3.2 24 8-31 25-48 (240)
243 3con_A GTPase NRAS; structural 96.9 0.00057 2E-08 51.0 3.3 26 5-30 19-44 (190)
244 2cvh_A DNA repair and recombin 96.9 0.00059 2E-08 52.2 3.4 32 7-38 20-53 (220)
245 2pcj_A ABC transporter, lipopr 96.9 0.00042 1.4E-08 53.9 2.5 25 7-31 30-54 (224)
246 1ypw_A Transitional endoplasmi 96.9 0.00053 1.8E-08 63.2 3.4 32 7-38 238-269 (806)
247 2bjv_A PSP operon transcriptio 96.9 0.00064 2.2E-08 53.9 3.5 25 8-32 30-54 (265)
248 1lw7_A Transcriptional regulat 96.9 0.00054 1.8E-08 57.2 3.2 28 7-34 170-197 (365)
249 1oix_A RAS-related protein RAB 96.8 0.00063 2.1E-08 51.2 3.2 23 8-30 30-52 (191)
250 1sxj_C Activator 1 40 kDa subu 96.8 0.00062 2.1E-08 56.1 3.4 22 10-31 49-70 (340)
251 2px0_A Flagellar biosynthesis 96.8 0.00068 2.3E-08 55.0 3.6 25 7-31 105-129 (296)
252 2cbz_A Multidrug resistance-as 96.8 0.00053 1.8E-08 53.8 2.7 25 7-31 31-55 (237)
253 2f9l_A RAB11B, member RAS onco 96.8 0.00067 2.3E-08 51.2 3.2 24 7-30 5-28 (199)
254 2b8t_A Thymidine kinase; deoxy 96.8 0.00081 2.8E-08 52.2 3.7 25 7-31 12-36 (223)
255 1sxj_D Activator 1 41 kDa subu 96.8 0.00067 2.3E-08 55.8 3.4 24 9-32 60-83 (353)
256 3gfo_A Cobalt import ATP-bindi 96.8 0.00053 1.8E-08 55.1 2.7 25 7-31 34-58 (275)
257 2z4s_A Chromosomal replication 96.8 0.00086 2.9E-08 57.5 4.2 35 7-41 130-171 (440)
258 3k53_A Ferrous iron transport 96.8 0.00065 2.2E-08 54.2 3.2 26 5-30 1-26 (271)
259 1z2a_A RAS-related protein RAB 96.8 0.00077 2.6E-08 48.9 3.4 25 6-30 4-28 (168)
260 4g1u_C Hemin import ATP-bindin 96.8 0.00055 1.9E-08 54.7 2.6 25 7-31 37-61 (266)
261 3shw_A Tight junction protein 96.8 0.002 6.7E-08 55.5 6.2 94 7-123 224-318 (468)
262 2nzj_A GTP-binding protein REM 96.8 0.00076 2.6E-08 49.4 3.3 24 6-29 3-26 (175)
263 2wsm_A Hydrogenase expression/ 96.8 0.00081 2.8E-08 51.5 3.5 25 7-31 30-54 (221)
264 1g8p_A Magnesium-chelatase 38 96.8 0.00046 1.6E-08 56.8 2.2 24 9-32 47-70 (350)
265 1ky3_A GTP-binding protein YPT 96.8 0.0008 2.7E-08 49.5 3.3 25 6-30 7-31 (182)
266 1sgw_A Putative ABC transporte 96.8 0.00057 1.9E-08 52.8 2.6 25 7-31 35-59 (214)
267 1b0u_A Histidine permease; ABC 96.8 0.00059 2E-08 54.4 2.7 25 7-31 32-56 (262)
268 1mh1_A RAC1; GTP-binding, GTPa 96.8 0.00088 3E-08 49.5 3.5 25 5-29 3-27 (186)
269 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00074 2.5E-08 53.4 3.2 24 7-30 29-52 (250)
270 1n0w_A DNA repair protein RAD5 96.8 0.0008 2.7E-08 52.3 3.4 24 7-30 24-47 (243)
271 2ff7_A Alpha-hemolysin translo 96.8 0.00061 2.1E-08 53.8 2.7 25 7-31 35-59 (247)
272 2og2_A Putative signal recogni 96.8 0.00085 2.9E-08 55.9 3.7 25 7-31 157-181 (359)
273 1mv5_A LMRA, multidrug resista 96.8 0.00063 2.1E-08 53.5 2.7 25 7-31 28-52 (243)
274 1ji0_A ABC transporter; ATP bi 96.8 0.00065 2.2E-08 53.4 2.7 25 7-31 32-56 (240)
275 1upt_A ARL1, ADP-ribosylation 96.7 0.001 3.5E-08 48.4 3.6 24 6-29 6-29 (171)
276 2fh5_B SR-beta, signal recogni 96.7 0.00089 3E-08 51.0 3.4 30 1-30 1-30 (214)
277 1z0j_A RAB-22, RAS-related pro 96.7 0.00093 3.2E-08 48.5 3.4 26 5-30 4-29 (170)
278 1g6h_A High-affinity branched- 96.7 0.00065 2.2E-08 53.9 2.7 25 7-31 33-57 (257)
279 2hxs_A RAB-26, RAS-related pro 96.7 0.001 3.6E-08 48.8 3.6 26 5-30 4-29 (178)
280 2olj_A Amino acid ABC transpor 96.7 0.00067 2.3E-08 54.1 2.7 25 7-31 50-74 (263)
281 3reg_A RHO-like small GTPase; 96.7 0.00092 3.1E-08 50.1 3.3 25 6-30 22-46 (194)
282 2zu0_C Probable ATP-dependent 96.7 0.00083 2.9E-08 53.6 3.2 24 7-30 46-69 (267)
283 2hf9_A Probable hydrogenase ni 96.7 0.001 3.4E-08 51.2 3.6 26 6-31 37-62 (226)
284 2pze_A Cystic fibrosis transme 96.7 0.0007 2.4E-08 52.8 2.7 25 7-31 34-58 (229)
285 1sxj_E Activator 1 40 kDa subu 96.7 0.00079 2.7E-08 55.5 3.1 22 10-31 39-60 (354)
286 3kl4_A SRP54, signal recogniti 96.7 0.00081 2.8E-08 57.4 3.2 25 7-31 97-121 (433)
287 2gf0_A GTP-binding protein DI- 96.7 0.001 3.5E-08 49.8 3.5 25 5-29 6-30 (199)
288 2ixe_A Antigen peptide transpo 96.7 0.00071 2.4E-08 54.2 2.7 25 7-31 45-69 (271)
289 2zej_A Dardarin, leucine-rich 96.7 0.00077 2.6E-08 50.2 2.7 22 8-29 3-24 (184)
290 2ghi_A Transport protein; mult 96.7 0.00075 2.6E-08 53.7 2.7 25 7-31 46-70 (260)
291 1vpl_A ABC transporter, ATP-bi 96.7 0.00074 2.5E-08 53.6 2.7 25 7-31 41-65 (256)
292 2iwr_A Centaurin gamma 1; ANK 96.7 0.00082 2.8E-08 49.5 2.8 26 5-30 5-30 (178)
293 3ihw_A Centg3; RAS, centaurin, 96.7 0.0012 4E-08 49.3 3.6 26 5-30 18-43 (184)
294 2dr3_A UPF0273 protein PH0284; 96.7 0.001 3.6E-08 51.7 3.4 32 7-38 23-59 (247)
295 2lkc_A Translation initiation 96.7 0.0013 4.6E-08 48.2 3.8 24 6-29 7-30 (178)
296 1nij_A Hypothetical protein YJ 96.7 0.00081 2.8E-08 55.1 2.8 25 6-30 3-27 (318)
297 1iqp_A RFCS; clamp loader, ext 96.7 0.001 3.5E-08 54.0 3.4 24 9-32 48-71 (327)
298 2qi9_C Vitamin B12 import ATP- 96.7 0.0008 2.7E-08 53.2 2.7 25 7-31 26-50 (249)
299 1cr0_A DNA primase/helicase; R 96.7 0.001 3.6E-08 53.6 3.4 25 7-31 35-59 (296)
300 3jvv_A Twitching mobility prot 96.7 0.0011 3.7E-08 55.3 3.6 24 8-31 124-147 (356)
301 1r2q_A RAS-related protein RAB 96.7 0.0011 3.7E-08 48.1 3.2 25 5-29 4-28 (170)
302 1u0j_A DNA replication protein 96.7 0.0011 3.9E-08 52.7 3.5 25 9-33 106-130 (267)
303 3sop_A Neuronal-specific septi 96.7 0.00091 3.1E-08 53.5 3.0 24 8-31 3-26 (270)
304 3tsz_A Tight junction protein 96.7 0.0028 9.6E-08 53.4 6.1 95 7-128 232-330 (391)
305 1jr3_A DNA polymerase III subu 96.7 0.0012 4E-08 54.8 3.8 26 8-33 39-64 (373)
306 2bme_A RAB4A, RAS-related prot 96.7 0.0012 4.1E-08 48.9 3.5 25 6-30 9-33 (186)
307 2ihy_A ABC transporter, ATP-bi 96.7 0.00081 2.8E-08 54.1 2.7 25 7-31 47-71 (279)
308 3pxi_A Negative regulator of g 96.7 0.0011 3.7E-08 60.7 3.8 31 8-38 202-242 (758)
309 3tvt_A Disks large 1 tumor sup 96.7 0.049 1.7E-06 43.9 13.2 50 74-128 181-231 (292)
310 1ypw_A Transitional endoplasmi 96.7 0.00059 2E-08 62.8 2.1 32 7-38 511-542 (806)
311 1g16_A RAS-related protein SEC 96.7 0.0011 3.9E-08 48.1 3.2 23 7-29 3-25 (170)
312 2ged_A SR-beta, signal recogni 96.7 0.0012 4.2E-08 49.2 3.5 24 7-30 48-71 (193)
313 2gj8_A MNME, tRNA modification 96.6 0.0011 3.8E-08 48.9 3.2 24 7-30 4-27 (172)
314 2ewv_A Twitching motility prot 96.6 0.0011 3.8E-08 55.5 3.5 25 7-31 136-160 (372)
315 1vg8_A RAS-related protein RAB 96.6 0.0011 3.9E-08 49.9 3.3 25 6-30 7-31 (207)
316 2yhs_A FTSY, cell division pro 96.6 0.0012 4E-08 57.2 3.7 25 7-31 293-317 (503)
317 3q85_A GTP-binding protein REM 96.6 0.0012 4E-08 48.1 3.2 22 8-29 3-24 (169)
318 2yz2_A Putative ABC transporte 96.6 0.00087 3E-08 53.5 2.7 25 7-31 33-57 (266)
319 3q72_A GTP-binding protein RAD 96.6 0.0011 3.7E-08 48.1 3.0 21 8-28 3-23 (166)
320 3p32_A Probable GTPase RV1496/ 96.6 0.0013 4.3E-08 54.8 3.7 25 7-31 79-103 (355)
321 2qen_A Walker-type ATPase; unk 96.6 0.0016 5.4E-08 53.3 4.2 33 8-40 32-64 (350)
322 3bwd_D RAC-like GTP-binding pr 96.6 0.0014 4.8E-08 48.3 3.6 26 5-30 6-31 (182)
323 2nq2_C Hypothetical ABC transp 96.6 0.00091 3.1E-08 53.0 2.6 25 7-31 31-55 (253)
324 1nrj_B SR-beta, signal recogni 96.6 0.0014 4.7E-08 50.1 3.6 26 6-31 11-36 (218)
325 3tw8_B RAS-related protein RAB 96.6 0.0011 3.9E-08 48.6 3.0 24 6-29 8-31 (181)
326 2chq_A Replication factor C sm 96.6 0.0012 4.2E-08 53.3 3.4 23 9-31 40-62 (319)
327 1z08_A RAS-related protein RAB 96.6 0.0013 4.4E-08 47.8 3.2 24 7-30 6-29 (170)
328 2www_A Methylmalonic aciduria 96.6 0.0013 4.6E-08 54.5 3.6 25 7-31 74-98 (349)
329 2efe_B Small GTP-binding prote 96.6 0.0013 4.6E-08 48.3 3.3 24 6-29 11-34 (181)
330 2cxx_A Probable GTP-binding pr 96.6 0.0012 4.1E-08 49.0 3.0 23 8-30 2-24 (190)
331 1nlf_A Regulatory protein REPA 96.6 0.0012 4E-08 52.9 3.1 24 7-30 30-53 (279)
332 3fvq_A Fe(3+) IONS import ATP- 96.6 0.0012 3.9E-08 55.1 3.1 25 7-31 30-54 (359)
333 2gza_A Type IV secretion syste 96.6 0.0011 3.6E-08 55.4 2.9 26 7-32 175-200 (361)
334 1yrb_A ATP(GTP)binding protein 96.6 0.0016 5.6E-08 51.3 3.9 27 5-31 12-38 (262)
335 3bc1_A RAS-related protein RAB 96.6 0.0014 4.7E-08 48.7 3.3 23 7-29 11-33 (195)
336 2bcg_Y Protein YP2, GTP-bindin 96.6 0.0014 4.9E-08 49.5 3.4 24 6-29 7-30 (206)
337 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0014 4.9E-08 59.8 4.0 30 9-38 490-519 (758)
338 2bov_A RAla, RAS-related prote 96.6 0.0015 5E-08 49.2 3.4 26 5-30 12-37 (206)
339 2v3c_C SRP54, signal recogniti 96.6 0.0012 4.1E-08 56.4 3.2 32 7-38 99-135 (432)
340 3t1o_A Gliding protein MGLA; G 96.6 0.0015 5.1E-08 48.7 3.4 26 7-32 14-39 (198)
341 2atv_A RERG, RAS-like estrogen 96.6 0.0015 5.3E-08 49.0 3.5 25 6-30 27-51 (196)
342 2pjz_A Hypothetical protein ST 96.6 0.0011 3.6E-08 52.9 2.7 25 7-31 30-54 (263)
343 3kkq_A RAS-related protein M-R 96.6 0.0015 5.3E-08 48.2 3.4 24 7-30 18-41 (183)
344 2qm8_A GTPase/ATPase; G protei 96.5 0.0015 5.3E-08 53.9 3.7 25 7-31 55-79 (337)
345 2erx_A GTP-binding protein DI- 96.5 0.0015 5E-08 47.5 3.2 23 7-29 3-25 (172)
346 1xx6_A Thymidine kinase; NESG, 96.5 0.0021 7.2E-08 48.7 4.1 26 6-31 7-32 (191)
347 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0015 5.1E-08 48.4 3.3 24 7-30 4-27 (189)
348 1z06_A RAS-related protein RAB 96.5 0.0016 5.3E-08 48.6 3.3 24 6-29 19-42 (189)
349 3clv_A RAB5 protein, putative; 96.5 0.0016 5.6E-08 48.6 3.5 25 6-30 6-30 (208)
350 1r8s_A ADP-ribosylation factor 96.5 0.0018 6.1E-08 46.8 3.6 23 8-30 1-23 (164)
351 1zu4_A FTSY; GTPase, signal re 96.5 0.0016 5.5E-08 53.4 3.7 25 7-31 105-129 (320)
352 2ew1_A RAS-related protein RAB 96.5 0.0016 5.4E-08 49.5 3.4 24 7-30 26-49 (201)
353 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0016 5.3E-08 48.4 3.2 25 6-30 6-30 (184)
354 1gwn_A RHO-related GTP-binding 96.5 0.0015 5.2E-08 49.7 3.2 24 7-30 28-51 (205)
355 3rlf_A Maltose/maltodextrin im 96.5 0.0014 4.8E-08 55.0 3.2 25 7-31 29-53 (381)
356 1z47_A CYSA, putative ABC-tran 96.5 0.0014 4.9E-08 54.4 3.2 25 7-31 41-65 (355)
357 2yyz_A Sugar ABC transporter, 96.5 0.0014 4.9E-08 54.5 3.2 25 7-31 29-53 (359)
358 2oil_A CATX-8, RAS-related pro 96.5 0.0016 5.6E-08 48.6 3.3 24 7-30 25-48 (193)
359 3t5g_A GTP-binding protein RHE 96.5 0.0016 5.4E-08 48.0 3.1 24 6-29 5-28 (181)
360 1sxj_B Activator 1 37 kDa subu 96.5 0.0016 5.5E-08 52.7 3.4 23 9-31 44-66 (323)
361 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0017 5.9E-08 53.1 3.5 31 8-38 124-156 (331)
362 1z0f_A RAB14, member RAS oncog 96.5 0.0018 6E-08 47.5 3.3 24 7-30 15-38 (179)
363 1svi_A GTP-binding protein YSX 96.5 0.0016 5.4E-08 48.6 3.1 24 7-30 23-46 (195)
364 1p9r_A General secretion pathw 96.5 0.0018 6.2E-08 55.1 3.7 25 8-32 168-192 (418)
365 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.0011 3.6E-08 57.8 2.3 25 8-32 42-66 (500)
366 2it1_A 362AA long hypothetical 96.5 0.0015 5.3E-08 54.4 3.2 25 7-31 29-53 (362)
367 2fv8_A H6, RHO-related GTP-bin 96.5 0.0017 5.7E-08 49.3 3.2 24 6-29 24-47 (207)
368 1pzn_A RAD51, DNA repair and r 96.4 0.0015 5.2E-08 54.2 3.1 25 7-31 131-155 (349)
369 1x3s_A RAS-related protein RAB 96.4 0.0018 6.2E-08 48.2 3.2 25 6-30 14-38 (195)
370 1v43_A Sugar-binding transport 96.4 0.0016 5.5E-08 54.5 3.2 25 7-31 37-61 (372)
371 3tui_C Methionine import ATP-b 96.4 0.0016 5.6E-08 54.3 3.2 25 7-31 54-78 (366)
372 1m2o_B GTP-binding protein SAR 96.4 0.0019 6.4E-08 48.4 3.3 23 7-29 23-45 (190)
373 3oes_A GTPase rhebl1; small GT 96.4 0.0018 6.2E-08 48.8 3.2 25 6-30 23-47 (201)
374 3i8s_A Ferrous iron transport 96.4 0.0018 6E-08 51.9 3.3 25 6-30 2-26 (274)
375 3dz8_A RAS-related protein RAB 96.4 0.002 6.9E-08 48.1 3.4 25 7-31 23-47 (191)
376 4gzl_A RAS-related C3 botulinu 96.4 0.0019 6.4E-08 49.0 3.3 24 6-29 29-52 (204)
377 1pui_A ENGB, probable GTP-bind 96.4 0.0009 3.1E-08 50.8 1.5 23 7-29 26-48 (210)
378 2g6b_A RAS-related protein RAB 96.4 0.0019 6.6E-08 47.4 3.3 25 6-30 9-33 (180)
379 1g29_1 MALK, maltose transport 96.4 0.0017 5.7E-08 54.4 3.2 25 7-31 29-53 (372)
380 3tkl_A RAS-related protein RAB 96.4 0.002 6.9E-08 48.0 3.3 24 7-30 16-39 (196)
381 3pqc_A Probable GTP-binding pr 96.4 0.0018 6.2E-08 48.2 3.0 23 8-30 24-46 (195)
382 3nh6_A ATP-binding cassette SU 96.4 0.00091 3.1E-08 54.5 1.4 25 7-31 80-104 (306)
383 2atx_A Small GTP binding prote 96.4 0.0024 8.1E-08 47.7 3.7 24 7-30 18-41 (194)
384 2bbs_A Cystic fibrosis transme 96.4 0.0016 5.4E-08 52.7 2.7 25 7-31 64-88 (290)
385 3iby_A Ferrous iron transport 96.4 0.0019 6.4E-08 51.2 3.1 23 8-30 2-24 (256)
386 3c5c_A RAS-like protein 12; GD 96.4 0.0022 7.4E-08 47.9 3.3 25 6-30 20-44 (187)
387 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0017 5.9E-08 55.9 3.1 25 7-31 138-162 (460)
388 1moz_A ARL1, ADP-ribosylation 96.4 0.0014 4.7E-08 48.4 2.2 23 6-28 17-39 (183)
389 2j0v_A RAC-like GTP-binding pr 96.4 0.0026 8.8E-08 48.3 3.7 25 6-30 8-32 (212)
390 2gf9_A RAS-related protein RAB 96.4 0.0022 7.5E-08 47.8 3.3 24 7-30 22-45 (189)
391 1zd9_A ADP-ribosylation factor 96.4 0.0023 7.7E-08 47.7 3.3 24 6-29 21-44 (188)
392 3lxx_A GTPase IMAP family memb 96.4 0.002 6.9E-08 50.2 3.1 24 6-29 28-51 (239)
393 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0015 5E-08 53.9 2.4 25 7-31 171-195 (330)
394 1a5t_A Delta prime, HOLB; zinc 96.3 0.0028 9.5E-08 52.2 4.1 28 6-33 23-50 (334)
395 2p5s_A RAS and EF-hand domain 96.3 0.0024 8.4E-08 48.0 3.4 25 6-30 27-51 (199)
396 3hr8_A Protein RECA; alpha and 96.3 0.0023 7.7E-08 53.3 3.4 25 7-31 61-85 (356)
397 2fu5_C RAS-related protein RAB 96.3 0.0014 4.7E-08 48.5 2.0 24 6-29 7-30 (183)
398 1ksh_A ARF-like protein 2; sma 96.3 0.0023 7.8E-08 47.4 3.2 23 7-29 18-40 (186)
399 1fzq_A ADP-ribosylation factor 96.3 0.0022 7.4E-08 47.6 3.1 25 6-30 15-39 (181)
400 2fg5_A RAB-22B, RAS-related pr 96.3 0.0022 7.6E-08 47.9 3.1 24 7-30 23-46 (192)
401 2j37_W Signal recognition part 96.3 0.0024 8E-08 55.6 3.6 25 7-31 101-125 (504)
402 1zbd_A Rabphilin-3A; G protein 96.3 0.0023 7.9E-08 48.2 3.2 24 7-30 8-31 (203)
403 3d31_A Sulfate/molybdate ABC t 96.3 0.0014 4.6E-08 54.5 1.9 25 7-31 26-50 (348)
404 1f6b_A SAR1; gtpases, N-termin 96.3 0.002 6.8E-08 48.6 2.7 23 7-29 25-47 (198)
405 3kta_A Chromosome segregation 96.3 0.0024 8.1E-08 47.5 3.1 25 8-32 27-51 (182)
406 1wf3_A GTP-binding protein; GT 96.3 0.0024 8.4E-08 51.8 3.4 29 1-29 1-29 (301)
407 1qvr_A CLPB protein; coiled co 96.3 0.0023 7.8E-08 59.4 3.5 24 8-31 192-215 (854)
408 1zj6_A ADP-ribosylation factor 96.3 0.0026 8.8E-08 47.3 3.2 24 6-29 15-38 (187)
409 2a5j_A RAS-related protein RAB 96.3 0.0029 9.8E-08 47.2 3.5 25 6-30 20-44 (191)
410 2b6h_A ADP-ribosylation factor 96.3 0.0025 8.5E-08 47.8 3.1 24 6-29 28-51 (192)
411 2j1l_A RHO-related GTP-binding 96.3 0.0025 8.4E-08 48.7 3.1 24 6-29 33-56 (214)
412 2h17_A ADP-ribosylation factor 96.3 0.0021 7.3E-08 47.5 2.7 25 6-30 20-44 (181)
413 3gd7_A Fusion complex of cysti 96.3 0.0023 7.7E-08 53.9 3.1 25 7-31 47-71 (390)
414 2cjw_A GTP-binding protein GEM 96.2 0.0028 9.4E-08 47.6 3.3 24 7-30 6-29 (192)
415 4djt_A GTP-binding nuclear pro 96.2 0.00095 3.2E-08 51.0 0.7 24 5-28 9-32 (218)
416 3cbq_A GTP-binding protein REM 96.2 0.002 7E-08 48.5 2.5 22 7-28 23-44 (195)
417 3q3j_B RHO-related GTP-binding 96.2 0.003 1E-07 48.3 3.4 26 5-30 25-50 (214)
418 1j8m_F SRP54, signal recogniti 96.2 0.0027 9.2E-08 51.5 3.3 25 7-31 98-122 (297)
419 2o52_A RAS-related protein RAB 96.2 0.0026 9E-08 48.0 3.0 23 7-29 25-47 (200)
420 3lda_A DNA repair protein RAD5 96.2 0.0025 8.5E-08 53.9 3.1 23 7-29 178-200 (400)
421 3a1s_A Iron(II) transport prot 96.2 0.0028 9.4E-08 50.3 3.2 25 5-29 3-27 (258)
422 2zts_A Putative uncharacterize 96.2 0.0032 1.1E-07 49.0 3.5 25 6-30 29-53 (251)
423 2gco_A H9, RHO-related GTP-bin 96.2 0.003 1E-07 47.6 3.2 24 7-30 25-48 (201)
424 3cph_A RAS-related protein SEC 96.2 0.0033 1.1E-07 47.6 3.4 23 7-29 20-42 (213)
425 2zr9_A Protein RECA, recombina 96.2 0.0033 1.1E-07 52.1 3.6 33 7-39 61-98 (349)
426 2xtp_A GTPase IMAP family memb 96.1 0.003 1E-07 49.8 3.2 25 6-30 21-45 (260)
427 2p67_A LAO/AO transport system 96.1 0.0033 1.1E-07 51.9 3.5 26 6-31 55-80 (341)
428 1oxx_K GLCV, glucose, ABC tran 96.1 0.0014 4.7E-08 54.5 1.3 25 7-31 31-55 (353)
429 1ls1_A Signal recognition part 96.1 0.0036 1.2E-07 50.6 3.7 25 7-31 98-122 (295)
430 4bas_A ADP-ribosylation factor 96.1 0.0029 9.9E-08 47.3 2.9 24 6-29 16-39 (199)
431 1zcb_A G alpha I/13; GTP-bindi 96.1 0.0029 1E-07 52.8 3.2 26 6-31 32-57 (362)
432 2rcn_A Probable GTPase ENGC; Y 96.1 0.003 1E-07 52.5 3.2 25 7-31 215-239 (358)
433 3pxi_A Negative regulator of g 96.1 0.0036 1.2E-07 57.3 4.0 23 9-31 523-545 (758)
434 2fna_A Conserved hypothetical 96.1 0.0042 1.4E-07 50.8 4.1 31 8-38 31-63 (357)
435 2il1_A RAB12; G-protein, GDP, 96.1 0.0032 1.1E-07 47.1 3.0 23 7-29 26-48 (192)
436 2qu8_A Putative nucleolar GTP- 96.1 0.0032 1.1E-07 48.5 3.2 23 7-29 29-51 (228)
437 2yv5_A YJEQ protein; hydrolase 96.1 0.0035 1.2E-07 50.9 3.5 24 7-31 165-188 (302)
438 2oap_1 GSPE-2, type II secreti 96.1 0.0027 9.1E-08 55.4 2.9 25 7-31 260-284 (511)
439 3k1j_A LON protease, ATP-depen 96.1 0.0029 9.8E-08 56.4 3.1 25 8-32 61-85 (604)
440 1ojl_A Transcriptional regulat 96.1 0.0034 1.2E-07 51.0 3.3 24 8-31 26-49 (304)
441 2q3h_A RAS homolog gene family 96.1 0.0036 1.2E-07 47.0 3.3 24 6-29 19-42 (201)
442 2r8r_A Sensor protein; KDPD, P 96.1 0.0041 1.4E-07 48.3 3.6 32 8-39 7-43 (228)
443 2xtz_A Guanine nucleotide-bind 96.1 0.0038 1.3E-07 51.9 3.6 31 1-31 3-33 (354)
444 2qag_B Septin-6, protein NEDD5 96.1 0.003 1E-07 53.8 3.0 21 10-30 45-65 (427)
445 2xxa_A Signal recognition part 96.1 0.0039 1.3E-07 53.3 3.7 25 7-31 100-124 (433)
446 3lxw_A GTPase IMAP family memb 96.1 0.0035 1.2E-07 49.3 3.2 24 6-29 20-43 (247)
447 2h57_A ADP-ribosylation factor 96.1 0.0027 9.2E-08 47.3 2.4 25 6-30 20-44 (190)
448 2hup_A RAS-related protein RAB 96.1 0.0035 1.2E-07 47.3 3.1 23 7-29 29-51 (201)
449 3b1v_A Ferrous iron uptake tra 96.0 0.0038 1.3E-07 49.9 3.3 24 7-30 3-26 (272)
450 1ega_A Protein (GTP-binding pr 96.0 0.0036 1.2E-07 50.8 3.2 25 6-30 7-31 (301)
451 1tq4_A IIGP1, interferon-induc 96.0 0.0036 1.2E-07 53.1 3.1 23 8-30 70-92 (413)
452 1ko7_A HPR kinase/phosphatase; 96.0 0.0047 1.6E-07 50.4 3.6 31 7-38 144-174 (314)
453 3llu_A RAS-related GTP-binding 96.0 0.0031 1.1E-07 47.3 2.4 26 6-31 19-44 (196)
454 2f7s_A C25KG, RAS-related prot 96.0 0.0042 1.4E-07 47.3 3.2 23 7-29 25-47 (217)
455 2x77_A ADP-ribosylation factor 96.0 0.0029 1E-07 47.0 2.2 23 6-28 21-43 (189)
456 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0056 1.9E-07 55.9 4.4 25 7-31 207-231 (758)
457 1v5w_A DMC1, meiotic recombina 96.0 0.0041 1.4E-07 51.4 3.2 24 7-30 122-145 (343)
458 2qnr_A Septin-2, protein NEDD5 95.9 0.0035 1.2E-07 50.9 2.7 23 7-29 18-40 (301)
459 1u94_A RECA protein, recombina 95.9 0.0052 1.8E-07 51.1 3.8 32 7-38 63-99 (356)
460 2z43_A DNA repair and recombin 95.9 0.0045 1.6E-07 50.7 3.4 25 7-31 107-131 (324)
461 1u0l_A Probable GTPase ENGC; p 95.9 0.0034 1.2E-07 50.9 2.5 24 7-30 169-192 (301)
462 1qvr_A CLPB protein; coiled co 95.9 0.0041 1.4E-07 57.7 3.3 28 9-36 590-620 (854)
463 2ffh_A Protein (FFH); SRP54, s 95.9 0.0055 1.9E-07 52.2 3.6 25 7-31 98-122 (425)
464 2g3y_A GTP-binding protein GEM 95.9 0.0051 1.8E-07 47.1 3.2 23 7-29 37-59 (211)
465 2dby_A GTP-binding protein; GD 95.8 0.0053 1.8E-07 51.3 3.4 23 8-30 2-24 (368)
466 1w5s_A Origin recognition comp 95.8 0.0044 1.5E-07 51.9 2.9 25 7-31 50-76 (412)
467 2j9r_A Thymidine kinase; TK1, 95.8 0.0085 2.9E-07 46.1 4.2 25 7-31 28-52 (214)
468 3cpj_B GTP-binding protein YPT 95.8 0.0057 2E-07 46.9 3.3 24 7-30 13-36 (223)
469 1xp8_A RECA protein, recombina 95.8 0.0074 2.5E-07 50.4 4.1 33 7-39 74-111 (366)
470 1knx_A Probable HPR(Ser) kinas 95.8 0.0055 1.9E-07 49.9 3.2 30 8-38 148-177 (312)
471 2i1q_A DNA repair and recombin 95.8 0.0051 1.8E-07 50.2 3.1 24 7-30 98-121 (322)
472 1ni3_A YCHF GTPase, YCHF GTP-b 95.8 0.007 2.4E-07 51.0 3.9 24 6-29 19-42 (392)
473 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0066 2.2E-07 43.9 3.3 23 7-29 23-45 (149)
474 3gj0_A GTP-binding nuclear pro 95.8 0.0044 1.5E-07 47.4 2.5 26 6-31 14-40 (221)
475 3bh0_A DNAB-like replicative h 95.7 0.0065 2.2E-07 49.6 3.6 25 7-31 68-92 (315)
476 3io5_A Recombination and repai 95.7 0.0063 2.2E-07 49.7 3.4 23 9-31 30-52 (333)
477 4dkx_A RAS-related protein RAB 95.7 0.0068 2.3E-07 46.7 3.4 25 5-29 11-35 (216)
478 3euj_A Chromosome partition pr 95.7 0.0055 1.9E-07 53.0 3.2 24 8-31 30-53 (483)
479 4dcu_A GTP-binding protein ENG 95.7 0.0054 1.9E-07 52.7 3.1 25 5-29 21-45 (456)
480 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0055 1.9E-07 53.8 3.2 25 7-31 47-71 (538)
481 3upu_A ATP-dependent DNA helic 95.7 0.0065 2.2E-07 52.2 3.5 23 9-31 47-69 (459)
482 1mky_A Probable GTP-binding pr 95.7 0.0061 2.1E-07 52.1 3.3 24 7-30 180-203 (439)
483 3f9v_A Minichromosome maintena 95.7 0.0026 8.8E-08 56.6 0.9 28 9-36 329-356 (595)
484 2obl_A ESCN; ATPase, hydrolase 95.6 0.0076 2.6E-07 49.9 3.6 26 7-32 71-96 (347)
485 2yc2_C IFT27, small RAB-relate 95.6 0.0026 9E-08 47.8 0.7 24 7-30 20-43 (208)
486 3kjh_A CO dehydrogenase/acetyl 95.6 0.0057 2E-07 47.5 2.7 23 9-31 2-24 (254)
487 2qag_C Septin-7; cell cycle, c 95.6 0.0054 1.8E-07 52.1 2.7 23 8-30 32-54 (418)
488 3def_A T7I23.11 protein; chlor 95.6 0.007 2.4E-07 47.9 3.1 25 6-30 35-59 (262)
489 3b5x_A Lipid A export ATP-bind 95.6 0.0065 2.2E-07 53.9 3.2 25 7-31 369-393 (582)
490 4dhe_A Probable GTP-binding pr 95.6 0.0031 1.1E-07 48.2 1.0 24 7-30 29-52 (223)
491 2dpy_A FLII, flagellum-specifi 95.6 0.0082 2.8E-07 51.3 3.6 26 7-32 157-182 (438)
492 3b60_A Lipid A export ATP-bind 95.6 0.0057 1.9E-07 54.2 2.7 25 7-31 369-393 (582)
493 1tf7_A KAIC; homohexamer, hexa 95.5 0.0067 2.3E-07 53.1 3.1 20 9-28 41-62 (525)
494 3e1s_A Exodeoxyribonuclease V, 95.5 0.0081 2.8E-07 53.2 3.5 25 7-31 204-228 (574)
495 2aka_B Dynamin-1; fusion prote 95.5 0.0076 2.6E-07 48.3 3.1 24 7-30 26-49 (299)
496 1t9h_A YLOQ, probable GTPase E 95.5 0.0025 8.7E-08 51.9 0.2 23 7-29 173-195 (307)
497 1jal_A YCHF protein; nucleotid 95.5 0.0092 3.1E-07 49.7 3.5 24 7-30 2-25 (363)
498 1yqt_A RNAse L inhibitor; ATP- 95.5 0.0078 2.7E-07 52.9 3.2 25 7-31 312-336 (538)
499 3ozx_A RNAse L inhibitor; ATP 95.5 0.0065 2.2E-07 53.4 2.7 25 7-31 294-318 (538)
500 1jwy_B Dynamin A GTPase domain 95.5 0.0079 2.7E-07 48.7 3.1 24 7-30 24-47 (315)
No 1
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=2.3e-45 Score=288.80 Aligned_cols=208 Identities=44% Similarity=0.774 Sum_probs=184.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KC 84 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 84 (228)
.++..|+|+|||||||+|+.|+++|++++|++++++|+.+..++++|+.++.++..|..+|++++..++.+++... ..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~ 87 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN 87 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999775 67
Q ss_pred ceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCC
Q psy6801 85 NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDD 164 (228)
Q Consensus 85 ~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 164 (228)
+||+||||++..|++.|...+..|+.+|+|++|++++.+|+..|.+|+.||+.||..|+||..++.|+.|+++|.+|.+|
T Consensus 88 g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~DD 167 (230)
T 3gmt_A 88 GYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDD 167 (230)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGG
T ss_pred CeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCCC
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcHHHHHHHhhhC-----------CcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 165 KPEAIKKRLETFDQTIKPLLDYYDNR-----------EVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 165 ~~~~~~~~~~~y~~~~~~~~~~~~~~-----------~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
.++.+++|+..|++++.++.++|.+. +.++.||++.+ ++|+++|.+.|.+
T Consensus 168 ~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 168 KEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999973 78999999999 9999999988764
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=8.7e-44 Score=277.62 Aligned_cols=199 Identities=44% Similarity=0.777 Sum_probs=188.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCceE
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNYL 87 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 87 (228)
|+|+|+|||||||+|+|++|+++||+++|+++|++|+++..++++|..++.++..|..+|++++..++.+++.. ..+||
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-~~~~i 79 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-HGNVI 79 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-SSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-CCceE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999877 78899
Q ss_pred EcCCCCCHHHHHHHH----hcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCC
Q psy6801 88 LDGFPRTYDQAMALF----KNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDD 163 (228)
Q Consensus 88 ldg~p~~~~~~~~l~----~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 163 (228)
+||||++..|++.|. ..+..++.+|+|++|++++.+|+..|.+|+.||+.||..++||. +++++..|.+
T Consensus 80 lDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~-------~g~~l~~r~D 152 (206)
T 3sr0_A 80 FDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQRED 152 (206)
T ss_dssp EESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCC-------TTCCCBCCGG
T ss_pred ecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCC-------CCceecccCC
Confidence 999999999999874 44678999999999999999999999999999999999999985 5777889999
Q ss_pred CcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 164 DKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
+.++.+++|+..|++++.++.++|++.+.++.||++.+ ++|+++|.+.|..
T Consensus 153 D~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 153 DKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp GSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999 9999999998864
No 3
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=100.00 E-value=4.4e-39 Score=257.79 Aligned_cols=208 Identities=40% Similarity=0.676 Sum_probs=196.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--C
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--K 83 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 83 (228)
.|++|+|+|+|||||||+|+.|+++++++++++++++++.+..+++.+..+..++..|..+++..+..++...+... +
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~~ 107 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCK 107 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccccc
Confidence 57789999999999999999999999999999999999999999999999999999999999999999998888765 7
Q ss_pred CceEEcCCCCCHHHHHHHHh----cCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy6801 84 CNYLLDGFPRTYDQAMALFK----NHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLI 159 (228)
Q Consensus 84 ~~~ildg~p~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~ 159 (228)
.+||+||||++..|+..+.. .+..|+.+|+|++|++++.+|+.+|..|+.||+.||..++||..++.|+.|++++.
T Consensus 108 ~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 187 (243)
T 3tlx_A 108 KGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLI 187 (243)
T ss_dssp SEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCB
T ss_pred CCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCcccccccccc
Confidence 88999999999999887654 45679999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 160 QRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
.|.++.++.+++|+..|+..+.++.++|...+.++.||++.+ ++|+++|.+.|.
T Consensus 188 ~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 188 QREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp CCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999889999999999 999999999875
No 4
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=8.6e-39 Score=250.61 Aligned_cols=183 Identities=32% Similarity=0.609 Sum_probs=167.9
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-- 82 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 82 (228)
.++++|+|+|||||||+|+|+.|+++||+++|+++|++|+++..++++|+.++.++..|..+|++++..++.+++.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~ 106 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVD 106 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccc
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred -CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccC
Q psy6801 83 -KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQR 161 (228)
Q Consensus 83 -~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~ 161 (228)
..+||+||||++..|+..|......++++|+|++|++++.+|+..|..+ ..|
T Consensus 107 ~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~---------------------------~~R 159 (217)
T 3umf_A 107 KNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAET---------------------------SNR 159 (217)
T ss_dssp TCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC---------------------------------
T ss_pred cccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccccc---------------------------CCC
Confidence 6789999999999999999988889999999999999999999999422 236
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 162 DDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
.+|+++.+++|+..|++++.++.++|++.+.++.||++.+ ++|+++|.+.|..
T Consensus 160 ~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 160 VDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999 9999999999874
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=100.00 E-value=1e-37 Score=245.33 Aligned_cols=207 Identities=41% Similarity=0.708 Sum_probs=194.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCN 85 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 85 (228)
|+|+|+|+|||||||+|+.|+++++++++++|+++++.+..+++.+..+..++..|..+++..+..++...+... +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999888888764 788
Q ss_pred eEEcCCCCCHHHHHHHHh----cCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccC
Q psy6801 86 YLLDGFPRTYDQAMALFK----NHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQR 161 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~ 161 (228)
+|+||||.+..++..+.. .+..|+.+|+|++|++++.+|+..|..|+.||+.||..++||..++.|+.|++++..|
T Consensus 81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3dl0_A 81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence 999999999988877654 4567999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 162 DDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
.++.++.+++|+..|...+.++.++|...+.++.||++.+ ++++++|.+.|..
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888999999999 9999999998874
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=100.00 E-value=3.4e-37 Score=242.33 Aligned_cols=207 Identities=40% Similarity=0.700 Sum_probs=193.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCN 85 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 85 (228)
|+|+|+|+|||||||+|+.|++.++++++++|+++++.+..+++.+..+..++..|..+++..+..++...+... +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence 369999999999999999999999999999999999999999999999999999999999999999988888764 788
Q ss_pred eEEcCCCCCHHHHHHHHh----cCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccC
Q psy6801 86 YLLDGFPRTYDQAMALFK----NHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQR 161 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~ 161 (228)
||+||||.+..++..+.. .+..|+.+|+|++|++++.+|+..|..|+.||+.||..++||..++.|+.|++++..|
T Consensus 81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence 999999999988877654 4566999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 162 DDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
.++.++.+++|+..|...+.++.++|.+.+.++.||++.+ ++++++|.+.|..
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999888999999999 9999999998864
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=8.9e-37 Score=240.40 Aligned_cols=206 Identities=39% Similarity=0.682 Sum_probs=187.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KC 84 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 84 (228)
++.|+|+|+|||||||+|+.|++.++++++++|+++++.....+++|..+.+++..|..++++.+..++...+... +.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~ 84 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVN 84 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence 4679999999999999999999999999999999999998888999999999998898899998888888877654 77
Q ss_pred ceEEcCCCCCHHHHHHHH----hcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccccc
Q psy6801 85 NYLLDGFPRTYDQAMALF----KNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQ 160 (228)
Q Consensus 85 ~~ildg~p~~~~~~~~l~----~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~ 160 (228)
+||+||||++..|+..+. ..+..||.+|||++|++++.+|+..|..++.||+.||..++||...+.|+.|++++..
T Consensus 85 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 164 (217)
T 3be4_A 85 GFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVW 164 (217)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBC
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccccccc
Confidence 899999999988887765 3457899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHH
Q psy6801 161 RDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l 212 (228)
+.++..+.+++++..|.....++.++|...+.++.||++.+ ++|+++|.+.|
T Consensus 165 ~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 165 RDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp CGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 98889999999999999999999999987778999999999 99999998754
No 8
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=100.00 E-value=1.2e-35 Score=233.46 Aligned_cols=205 Identities=39% Similarity=0.717 Sum_probs=189.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--CCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--KCN 85 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 85 (228)
|+|+|+|+|||||||+|+.|++.+++.++++|+++++.+..+++.|..++.++..|..++++.+..++...+... ..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 369999999999999999999999999999999999988888899999999998888899999999988888664 468
Q ss_pred eEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCc
Q psy6801 86 YLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDK 165 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 165 (228)
||+||||++..++..+...+..|+.+|+|++|++++.+|+..|..++.||+.||..++||..++.|+.|++++..|.++.
T Consensus 81 ~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd~ 160 (214)
T 1e4v_A 81 FLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ 160 (214)
T ss_dssp EEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTCS
T ss_pred EEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCCC
Confidence 99999999999998888777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHHhhhC-----CcEEEEeCCCC-cchHHHHHHHH
Q psy6801 166 PEAIKKRLETFDQTIKPLLDYYDNR-----EVLDTFTGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 166 ~~~~~~~~~~y~~~~~~~~~~~~~~-----~~~i~id~~~~-e~v~~~i~~~l 212 (228)
.+.+++|+..|...+.++.++|... +.++.||++.+ ++|+++|.+.|
T Consensus 161 ~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 161 EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 9999999999999999999999764 57899999999 99999999876
No 9
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=100.00 E-value=1.2e-34 Score=230.62 Aligned_cols=210 Identities=39% Similarity=0.710 Sum_probs=190.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--C
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--K 83 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 83 (228)
.|+.|+|+|+|||||||+|+.|++++++.++++|+++++.+...+++++.++.++..|..++++.+..++..++... +
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~ 94 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCK 94 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccc
Confidence 45689999999999999999999999999999999999988888899999999999999999999999888888654 5
Q ss_pred CceEEcCCCCCHHHHHHHHh----cCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy6801 84 CNYLLDGFPRTYDQAMALFK----NHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLI 159 (228)
Q Consensus 84 ~~~ildg~p~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~ 159 (228)
.+||+||||++..++..+.. .+..|+.+|||++|++++.+|+..|..++.||+.||..++||..++.|+.+++++.
T Consensus 95 ~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 174 (233)
T 1ak2_A 95 NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLI 174 (233)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCE
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccccccc
Confidence 78999999999888776543 34569999999999999999999999999999999999999999999999998888
Q ss_pred cCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 160 QRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
.+.++..+.+.+++..|.....++.++|...+.++.||++.+ ++|+++|.+.|...
T Consensus 175 ~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 175 RRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231 (233)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence 888888999999999999999999999987777899999999 99999999988754
No 10
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=100.00 E-value=7.5e-35 Score=230.82 Aligned_cols=219 Identities=51% Similarity=0.950 Sum_probs=191.1
Q ss_pred CCcccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHh
Q psy6801 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVK 80 (228)
Q Consensus 1 m~~~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (228)
|..+..|+.|+|+|+|||||||+|+.|++.+++.++++|++++.....++++|..+.+++..|..++++.....+.+++.
T Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~ 80 (227)
T 1zd8_A 1 MGASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELK 80 (227)
T ss_dssp ------CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred CCccccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence 66666788999999999999999999999999999999999999888888999999999998988888887777777776
Q ss_pred cc-CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy6801 81 DL-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLI 159 (228)
Q Consensus 81 ~~-~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~ 159 (228)
.. +.+||+|+||.+..+...+... ..++.+|||++|++++.+|+..|..++.+|+.||..++||..++.|+.+++++.
T Consensus 81 ~~~~~~~vid~~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~ 159 (227)
T 1zd8_A 81 NLTQYSWLLDGFPRTLPQAEALDRA-YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLI 159 (227)
T ss_dssp TCTTSCEEEESCCCSHHHHHHHHTT-SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCB
T ss_pred cccCCCEEEeCCCCCHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCccccccccccccc
Confidence 42 6789999999998888878765 678999999999999999999998888999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCCCCCC
Q psy6801 160 QRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIPPLKR 221 (228)
Q Consensus 160 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~~~~~ 221 (228)
.+.++..+.+.+|+..|.....++.++|.+.+.++.||++ + ++++++|.+.|...++...+
T Consensus 160 ~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~~~~~~ 221 (227)
T 1zd8_A 160 QREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKVPQRSQ 221 (227)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTSCC---
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhcCCCCC
Confidence 8887888999999999999999999999877778999999 8 99999999999988876543
No 11
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=100.00 E-value=7.6e-34 Score=223.96 Aligned_cols=209 Identities=40% Similarity=0.730 Sum_probs=183.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHh-cc--
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVK-DL-- 82 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-- 82 (228)
.|+.|+|+|+|||||||+|+.|++.++++++++|+++++....+++.|..+..++..|..++++.+..++...+. ..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 82 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC 82 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence 356899999999999999999999999999999999999888889999999999999999999988888888776 32
Q ss_pred CCceEEcCCCCCHHHHHHHH----hcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccc
Q psy6801 83 KCNYLLDGFPRTYDQAMALF----KNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKL 158 (228)
Q Consensus 83 ~~~~ildg~p~~~~~~~~l~----~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~ 158 (228)
+.+||+||||++..++..+. ..+..||.+|||++|++++.+|+..|..++.||+.||..++||..+..+...++++
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l 162 (220)
T 1aky_A 83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL 162 (220)
T ss_dssp GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccccc
Confidence 67899999999988776553 34577999999999999999999999999999999999999998775433345677
Q ss_pred ccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 159 IQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
..+.++..+.+.+++..|.....++.++|...+.++.||++.+ ++|++.|.+.|..
T Consensus 163 ~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 219 (220)
T 1aky_A 163 VQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK 219 (220)
T ss_dssp BCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 7888888889999999999999999999987677899999999 9999999998753
No 12
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=100.00 E-value=1.1e-34 Score=229.28 Aligned_cols=205 Identities=37% Similarity=0.586 Sum_probs=184.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc-CCce
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-KCNY 86 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 86 (228)
+.|+|+|+|||||||+|+.|++.++++++++|+++++.+..+++.++.+++++..|..++++.+..++...+... +.+|
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v 80 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW 80 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence 369999999999999999999999999999999999987788889999999999998889988888888877543 5789
Q ss_pred EEcCCCCCHHHHHHHHh----cCCCCCEEEEEEeCHHHHHHHHhcCccCCC-CCcccccCCCCCCCCC-CCccccccccc
Q psy6801 87 LLDGFPRTYDQAMALFK----NHLSPNCVMHINVPKEVIIDRLSKRWIHPA-SGRVYNLDFNAPKKPG-IDDITGEKLIQ 160 (228)
Q Consensus 87 ildg~p~~~~~~~~l~~----~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~-~g~~~~~~~~~p~~~~-~~~~~~~~~~~ 160 (228)
|+||||++..++..+.. .+..|+.+|+|++|++++.+|+..|..++. ||+.||..++||..++ .|+.|++++..
T Consensus 81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~ 160 (223)
T 2xb4_A 81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSA 160 (223)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEEC
T ss_pred EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccccc
Confidence 99999999888877753 356899999999999999999999987777 9999999999999988 89999999999
Q ss_pred CCCCcHH-HHHHHHHHHHhcHHHHHH---Hhhh-----CCcEEEEeCCCC-cchHHHHHHHH
Q psy6801 161 RDDDKPE-AIKKRLETFDQTIKPLLD---YYDN-----REVLDTFTGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 161 ~~~~~~~-~~~~~~~~y~~~~~~~~~---~~~~-----~~~~i~id~~~~-e~v~~~i~~~l 212 (228)
+.++..+ .+++|+..|++.+.++.+ +|.. .+.++.||++.+ ++|++.|.+.|
T Consensus 161 r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 161 RADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp CGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 9888778 999999999999989888 8976 567899999999 99999999876
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=100.00 E-value=2.6e-31 Score=209.72 Aligned_cols=204 Identities=39% Similarity=0.731 Sum_probs=177.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc---C
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL---K 83 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~ 83 (228)
|+.|+|+|+|||||||+++.|++.++..++++|++++.....+++.|..+.+++..|..++++.+...+.+++... .
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQE 84 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccccC
Confidence 5689999999999999999999999999999999999988888899999999999999899988887777666532 5
Q ss_pred CceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCC
Q psy6801 84 CNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDD 163 (228)
Q Consensus 84 ~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 163 (228)
.+||+||||++..++..+...+..|+++|||++|++++.+|+..|..++.||+.|+..++||.....+ .++..+.+
T Consensus 85 ~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~----~~l~~r~~ 160 (222)
T 1zak_A 85 NGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIA----SRLTQRFD 160 (222)
T ss_dssp TCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGG----GGCBCCTT
T ss_pred CcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccc----cccccCCC
Confidence 78999999999988888887767899999999999999999999999999999999999999765543 34555666
Q ss_pred CcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 164 DKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
+..+.+++|+..|.....++.++|.. .++.||++.+ +++++.|.+.|...+
T Consensus 161 d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~l 212 (222)
T 1zak_A 161 DTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSIL 212 (222)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhhc
Confidence 77788999999999988888888864 4789999989 999999999998765
No 14
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.96 E-value=2.8e-27 Score=182.58 Aligned_cols=185 Identities=30% Similarity=0.588 Sum_probs=153.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-- 82 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 82 (228)
+.+++|+|+|+|||||||+|+.|++.+++++++.|++++.....+++.+..+.+.+..|..++.+.....+...+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence 356789999999999999999999999999999999999887778889999999998888888887777776665432
Q ss_pred -CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccC
Q psy6801 83 -KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQR 161 (228)
Q Consensus 83 -~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~ 161 (228)
+.++|+||+|.+..++..+......|+.+|||++|++++.+|+..|... .+ +
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~--~~-------------------------~ 139 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGET--SG-------------------------R 139 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTS--SS-------------------------C
T ss_pred cCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCc--CC-------------------------C
Confidence 7889999999998888777654466899999999999999999887311 01 2
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 162 DDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
..+..+.+.+++..|.....++.++|...+.++.||++.+ ++++++|.+.+...+
T Consensus 140 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~~ 195 (196)
T 2c95_A 140 VDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDALL 195 (196)
T ss_dssp GGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 2345677888899998888888888877667788999988 999999999987653
No 15
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.95 E-value=1.3e-26 Score=178.26 Aligned_cols=186 Identities=29% Similarity=0.504 Sum_probs=155.1
Q ss_pred CCcccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHh
Q psy6801 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVK 80 (228)
Q Consensus 1 m~~~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (228)
|.++| |++|+|+|+|||||||+|+.|++.+++++++.|++++.....+++.+..+.+.+..|...+.......+...+.
T Consensus 1 m~~~~-~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~ 79 (194)
T 1qf9_A 1 MEKSK-PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAID 79 (194)
T ss_dssp CCCCC-CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCc-CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 66654 56899999999999999999999999999999999998877788899999999999888888888888877776
Q ss_pred cc-CCceEEcCCCCCHHHHHHHHhc---CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccc
Q psy6801 81 DL-KCNYLLDGFPRTYDQAMALFKN---HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGE 156 (228)
Q Consensus 81 ~~-~~~~ildg~p~~~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~ 156 (228)
.. +.++|+||+|.+..+...+... +..|+++|||++|++++.+|+..|.. .+
T Consensus 80 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~--~~---------------------- 135 (194)
T 1qf9_A 80 ANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE--SS---------------------- 135 (194)
T ss_dssp TSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT--TS----------------------
T ss_pred hcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc--cC----------------------
Confidence 54 7789999999998877666422 23588999999999999999998831 11
Q ss_pred ccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 157 KLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
.+.++..+.+.+++..|.....++.++|...+.+++||++.+ ++++++|.+.+..
T Consensus 136 ---~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 136 ---GRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp ---CCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred ---CCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 134556788899999999888888888877776789999988 9999999998865
No 16
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.95 E-value=4.4e-27 Score=181.92 Aligned_cols=184 Identities=24% Similarity=0.502 Sum_probs=151.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc---
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--- 82 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 82 (228)
++++|+|+|+|||||||+|+.|++.+++.++++|++++.....+++.+..+.+++..|..++.+.....+.+.+...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence 45789999999999999999999999999999999999887777888999999998888888888777776665432
Q ss_pred CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCC
Q psy6801 83 KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRD 162 (228)
Q Consensus 83 ~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~ 162 (228)
+.++|+||+|.+..++..+......|+.+|||++|++++.+|+..|... .+ +.
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~--~~-------------------------~~ 143 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRS--SL-------------------------PV 143 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCC--CS-------------------------CH
T ss_pred CccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCC--CC-------------------------CC
Confidence 6789999999998887777654236899999999999999999998320 00 12
Q ss_pred CCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 163 DDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
++..+.+.+++..|.....++.++|...+.++.||++.+ ++++++|.+.+...+
T Consensus 144 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~~ 198 (199)
T 2bwj_A 144 DDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSIF 198 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 224567788888888888888888877666788999888 999999999987654
No 17
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.95 E-value=4.8e-26 Score=176.92 Aligned_cols=183 Identities=26% Similarity=0.609 Sum_probs=150.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHh-ccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIA-QNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-- 82 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 82 (228)
.|++|+|+|+|||||||+|+.|++.++++++++|++++.... .++++++.+..++..|...+++....++...+...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l~ 93 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVK 93 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhhc
Confidence 356899999999999999999999999999999999988654 56778888888888888888877776666655432
Q ss_pred -C-CceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccccc
Q psy6801 83 -K-CNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQ 160 (228)
Q Consensus 83 -~-~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~ 160 (228)
+ .+||+||+|++..+...+......|+.+|||++|++++.+|+..|... . .
T Consensus 94 ~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~--~-------------------------~ 146 (203)
T 1ukz_A 94 ANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKT--S-------------------------G 146 (203)
T ss_dssp TTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHH--H-------------------------C
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcccc--C-------------------------C
Confidence 3 579999999999888877765456899999999999999999988210 0 1
Q ss_pred CCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 161 RDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
+.++..+.+.+++..|.....++.++|...+.++.||++.+ ++++++|.+.|...
T Consensus 147 ~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~ 202 (203)
T 1ukz_A 147 RSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS 202 (203)
T ss_dssp CTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 23456778888999999988888888887777889999999 99999999988764
No 18
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.95 E-value=1.7e-25 Score=179.02 Aligned_cols=214 Identities=47% Similarity=0.886 Sum_probs=179.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc-CC
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-KC 84 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 84 (228)
.|.+|+|+|++||||||+++.|++++|+..++.|++++.......+.+..+...+..+...++..+...+...+... +.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999988766656677777777888887788877777776666532 66
Q ss_pred ceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCC
Q psy6801 85 NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDD 164 (228)
Q Consensus 85 ~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 164 (228)
+|++||+|....++..+... ..++++|+|++|++++.+|+..|..+..+|+.+.....+|...-.|+.|++++.....+
T Consensus 106 ~~il~g~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~~ 184 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDD 184 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTT-CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGGG
T ss_pred eEEEECCCCCHHHHHHHHhh-cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCCC
Confidence 79999999887777766654 56889999999999999999999989999987666567777666676777887777777
Q ss_pred cHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCCcchHHHHHHHHhhcCCCCC
Q psy6801 165 KPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTTDEIWPRIYEHLNIRIPPLK 220 (228)
Q Consensus 165 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~e~v~~~i~~~l~~~~~~~~ 220 (228)
..+.+.+++..|.+...++.++|.+.+.++.||++.+++++++|.+.|...++...
T Consensus 185 ~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~~~v~~~i~~~l~~~~~~~~ 240 (246)
T 2bbw_A 185 KPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETNKIWPYVYTLFSNKITPIQ 240 (246)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHTTSCCCC
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCcHHHHHHHHHHHHhhCCCCC
Confidence 88899999999999988999999988889999998779999999999998886654
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.95 E-value=3.5e-26 Score=175.21 Aligned_cols=179 Identities=38% Similarity=0.670 Sum_probs=146.3
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCC
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKC 84 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (228)
+.++.|+|+|+|||||||+++.|++.++++++++|++++..+..+++.+..+.+++..|...++......+...+. .
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~---~ 78 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA---E 78 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC---S
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc---C
Confidence 4566899999999999999999999999999999999998878888899999999998888888877777666553 3
Q ss_pred ceEEcCCCCCHHHHHHHH----hcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccccc
Q psy6801 85 NYLLDGFPRTYDQAMALF----KNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQ 160 (228)
Q Consensus 85 ~~ildg~p~~~~~~~~l~----~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~ 160 (228)
++|+||++....+...+. ..+..|+.+|||++|++++.+|+..|... . .
T Consensus 79 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~--~-------------------------~ 131 (186)
T 3cm0_A 79 RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAEL--E-------------------------G 131 (186)
T ss_dssp EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHH--H-------------------------T
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcccc--C-------------------------C
Confidence 599999999877765433 33345889999999999999999988210 0 1
Q ss_pred CCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 161 RDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 161 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
+.++..+.+.+++..|.....++.++|...+.++.||++.+ ++++++|.+.+.
T Consensus 132 r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 132 RSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 23456778888999998888888888877666889999988 999999988764
No 20
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.95 E-value=7.5e-26 Score=175.67 Aligned_cols=176 Identities=34% Similarity=0.666 Sum_probs=147.0
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc--
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL-- 82 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 82 (228)
..+++|+|+|+|||||||+|+.|++.++++++++|+++++.+...++.+..+.+++..|...+.+.....+.+.+...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 97 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDA 97 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcccC
Confidence 456789999999999999999999999999999999999988888889999999998888888888777777766543
Q ss_pred CCceEEcCCCCCHHHHHHHH----hcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccc
Q psy6801 83 KCNYLLDGFPRTYDQAMALF----KNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKL 158 (228)
Q Consensus 83 ~~~~ildg~p~~~~~~~~l~----~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~ 158 (228)
+.+||+||+|.+..+...+. ..+..|+.+|+|++|++++.+|+..|.
T Consensus 98 ~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~----------------------------- 148 (201)
T 2cdn_A 98 ANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG----------------------------- 148 (201)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC-----------------------------
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC-----------------------------
Confidence 67899999999987766543 334568999999999999999999871
Q ss_pred ccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 159 IQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
+.++..+.+.+++..|.....++.++|. ..++.||++.+ ++++++|.+.|.
T Consensus 149 --r~~~~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 149 --RADDTDDVILNRMKVYRDETAPLLEYYR--DQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp --CTTCSHHHHHHHHHHHHHHTTTHHHHTT--TTEEEEECCSCHHHHHHHHHHHTT
T ss_pred --CCCCCHHHHHHHHHHHHHhhHHHHHHhc--CcEEEEeCCCCHHHHHHHHHHHHc
Confidence 2234567788889999888777777773 35788999988 999999988764
No 21
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.95 E-value=8e-26 Score=174.12 Aligned_cols=183 Identities=28% Similarity=0.580 Sum_probs=145.9
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHh-ccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhc--
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIA-QNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKD-- 81 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 81 (228)
|.|+.|+|+|+|||||||+|+.|++.+++++++.|++++.... ..++++..+..++..|...+++....++...+..
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 80 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTM 80 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhh
Confidence 4577899999999999999999999999999999999988764 3567788888888888888887666555544322
Q ss_pred --c--CCceEEcCCCCCHHHHHHHHhc---CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccc
Q psy6801 82 --L--KCNYLLDGFPRTYDQAMALFKN---HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDIT 154 (228)
Q Consensus 82 --~--~~~~ildg~p~~~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~ 154 (228)
. +..||+||+|.+..+...+... ...|+.+|||++|++++.+|+.+|.. ..
T Consensus 81 ~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~--~~-------------------- 138 (196)
T 1tev_A 81 AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK--SS-------------------- 138 (196)
T ss_dssp HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH--TS--------------------
T ss_pred ccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc--cC--------------------
Confidence 1 6789999999998776554332 13478899999999999999988831 01
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 155 GEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
.+.++..+.+.+++..|.....++.++|...+.++.||++.+ ++++++|.+.|..
T Consensus 139 -----~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 139 -----GRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp -----SCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred -----CCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 134556788888999999999999999987777789999998 9999999998864
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.83 E-value=3e-19 Score=134.63 Aligned_cols=171 Identities=16% Similarity=0.183 Sum_probs=117.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhcc----ChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc-
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQN----TTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL- 82 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 82 (228)
+.|+|+|+|||||||+|+.| +.+|+++++++++++...... .+++......... .+...+...+...+...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 77 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTSN 77 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999 999999999999999876543 2333333333322 12334555566666222
Q ss_pred CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCC
Q psy6801 83 KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRD 162 (228)
Q Consensus 83 ~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~ 162 (228)
+..+|+||+ .+..+...+......|+.+|||++|++++.+|+..|... ..
T Consensus 78 ~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~-----------------------------~~ 127 (179)
T 3lw7_A 78 HDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRS-----------------------------DD 127 (179)
T ss_dssp CSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC---------------------------------
T ss_pred CCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCC-----------------------------CC
Confidence 788999999 888888888776457889999999999999999998210 01
Q ss_pred CCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 163 DDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
....+.+.+++..... .....++...+ +.||++.+ +++.++|.+.+...+
T Consensus 128 ~~~~~~~~~r~~~~~~--~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 128 SKEISELIRRDREELK--LGIGEVIAMAD--YIITNDSNYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp CCCHHHHHHHHHHHHH--HTHHHHHHTCS--EEEECCSCHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHhhhc--cChHhHHHhCC--EEEECCCCHHHHHHHHHHHHHHHh
Confidence 2345555555533211 11222333232 45677778 999999999988765
No 23
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.80 E-value=2e-18 Score=134.23 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=106.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh--CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHH------------H
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF--NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMI------------D 73 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 73 (228)
+-|+|+|++||||||+++.|++.+ |..++.+. .+.+++.|+.++..+..+...+..... .
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~------eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~ 76 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL 76 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE------SSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee------CCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999998 44444321 234677888888888887665553321 1
Q ss_pred HHHHHHhccCCceEEcCCCC------------CHHHHHHHH---hcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCccc
Q psy6801 74 LVKNEVKDLKCNYLLDGFPR------------TYDQAMALF---KNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVY 138 (228)
Q Consensus 74 ~~~~~l~~~~~~~ildg~p~------------~~~~~~~l~---~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~ 138 (228)
.+...+.+ +..+|.|.|.. ...+...+. ..+..||++|||++|++++.+|+.+|.... .
T Consensus 77 ~i~p~l~~-g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~--d--- 150 (205)
T 4hlc_A 77 KVIPALKE-GKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ--N--- 150 (205)
T ss_dssp THHHHHHT-TCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-----------
T ss_pred HHHHHHHc-CCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcc--c---
Confidence 22223333 66677786421 233333333 335679999999999999999999882110 0
Q ss_pred ccCCCCCCCCCCCcccccccccCCCCcHHHHHHHH-HHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 139 NLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRL-ETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 139 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
+.......+.+++ ..| ..+...+ ...+++||++.+ ++|+++|.+.|...+
T Consensus 151 ----------------------r~e~~~~~f~~~v~~~Y----~~l~~~~--~~~~~~IDa~~~~e~V~~~i~~~i~~~L 202 (205)
T 4hlc_A 151 ----------------------RLDQEDLKFHEKVIEGY----QEIIHNE--SQRFKSVNADQPLENVVEDTYQTIIKYL 202 (205)
T ss_dssp -----------------------CCHHHHHHHHHHHHHH----HHHHHSC--CTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred ----------------------chhccCHHHHHHHHHHH----HHHHHhC--CCCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 1111111222222 223 2222222 345889999999 999999999998877
Q ss_pred CC
Q psy6801 217 PP 218 (228)
Q Consensus 217 ~~ 218 (228)
+.
T Consensus 203 ~~ 204 (205)
T 4hlc_A 203 EK 204 (205)
T ss_dssp C-
T ss_pred hc
Confidence 53
No 24
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.79 E-value=1e-17 Score=128.46 Aligned_cols=163 Identities=15% Similarity=0.236 Sum_probs=105.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh---CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHH-----------HH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF---NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLM-----------ID 73 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 73 (228)
+.|+|+|+|||||||+++.|++.+ |+++++++. ...++.+..+...+..|...+.... ..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999998 999998853 2234566666666666644333211 11
Q ss_pred HHHHHHhccCCceEEc----------CCCCC--HHHHHHHH---hcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCccc
Q psy6801 74 LVKNEVKDLKCNYLLD----------GFPRT--YDQAMALF---KNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVY 138 (228)
Q Consensus 74 ~~~~~l~~~~~~~ild----------g~p~~--~~~~~~l~---~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~ 138 (228)
.+...+.. +..+|+| |+|.. ..++..+. ..+..||.+|||++|++++.+|+.+|.
T Consensus 75 ~i~~~l~~-~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~--------- 144 (195)
T 2pbr_A 75 KIIPDLKR-DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN--------- 144 (195)
T ss_dssp THHHHHHT-TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT---------
T ss_pred HHHHHHhC-CCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC---------
Confidence 22233333 5567777 55553 22333322 333479999999999999999998651
Q ss_pred ccCCCCCCCCCCCcccccccccCCCCcHHHHHHHH-HHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 139 NLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRL-ETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 139 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
+. +..+ +.+++ ..|.... ..| +.+++||++.+ ++++++|.+.+...+
T Consensus 145 ----------------------~~-~~~~-~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~~i~~~l~~~l 193 (195)
T 2pbr_A 145 ----------------------RF-ENKE-FLEKVRKGFLELA----KEE---ENVVVIDASGEEEEVFKEILRALSGVL 193 (195)
T ss_dssp ----------------------CC-CCHH-HHHHHHHHHHHHH----HHS---TTEEEEETTSCHHHHHHHHHHHHHTTC
T ss_pred ----------------------cc-chHH-HHHHHHHHHHHHH----hhC---CCEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 11 1223 33333 3443322 233 34688999988 999999999998766
Q ss_pred C
Q psy6801 217 P 217 (228)
Q Consensus 217 ~ 217 (228)
+
T Consensus 194 ~ 194 (195)
T 2pbr_A 194 R 194 (195)
T ss_dssp C
T ss_pred C
Confidence 3
No 25
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.79 E-value=3.9e-18 Score=133.26 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=111.3
Q ss_pred cccccceEEEEcCCCCChHHHHHHHHHHhC---cceeehhHHHHHHHhccChhhHHHHHHHHCCC--CCChHHH------
Q psy6801 3 NTLLMLKAVIIGAPGCGKGTISSRIIDHFN---VKHIATGDILRSHIAQNTTLGLKAKEYMNKGL--LVPDDLM------ 71 (228)
Q Consensus 3 ~~~~~~~i~i~G~~GsGKTt~a~~L~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------ 71 (228)
+.|.++.|+|+|++||||||+++.|++.++ ..++.+ + .+.++++|+.+++++..+. .+.....
T Consensus 2 ~~m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~----~--~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a 75 (213)
T 4edh_A 2 NAMTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT----R--EPGGTPLAERIRELLLAPSDEPMAADTELLLMFA 75 (213)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE----E--SSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHH
T ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc----c--CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 457788999999999999999999999984 344433 1 2346788899999888764 2333211
Q ss_pred ------HHHHHHHHhccCCceEEcCCC------------CCHHHHHHHHh---cCCCCCEEEEEEeCHHHHHHHHhcCcc
Q psy6801 72 ------IDLVKNEVKDLKCNYLLDGFP------------RTYDQAMALFK---NHLSPNCVMHINVPKEVIIDRLSKRWI 130 (228)
Q Consensus 72 ------~~~~~~~l~~~~~~~ildg~p------------~~~~~~~~l~~---~~~~~~~vi~l~~~~e~~~~R~~~R~~ 130 (228)
...+...+.+ +..+|+|.|. ....++..+.. .+..||++|||++|++++.+|+..|..
T Consensus 76 ~R~~~~~~~i~p~l~~-g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~ 154 (213)
T 4edh_A 76 ARAQHLAGVIRPALAR-GAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR 154 (213)
T ss_dssp HHHHHHHHTHHHHHHT-TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHHHC-CCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 1122223333 6677888642 12334444432 347799999999999999999999821
Q ss_pred CCCCCcccccCCCCCCCCCCCcccccccccCCCC-cHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHH
Q psy6801 131 HPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDD-KPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRI 208 (228)
Q Consensus 131 ~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i 208 (228)
.. +... ..+.+++....|. .+.+.+. ..+++||++.+ ++|+++|
T Consensus 155 ----~d------------------------r~E~~~~~~~~rv~~~y~----~l~~~~~--~~~~vIDa~~s~eeV~~~I 200 (213)
T 4edh_A 155 ----LD------------------------RFEQEDRRFFEAVRQTYL----QRAAQAP--ERYQVLDAGLPLAEVQAGL 200 (213)
T ss_dssp ----CC------------------------TTTTSCHHHHHHHHHHHH----HHHHHCT--TTEEEEETTSCHHHHHHHH
T ss_pred ----cC------------------------cccccHHHHHHHHHHHHH----HHHHHCC--CcEEEEeCCCCHHHHHHHH
Confidence 00 1111 2233333233443 3333342 35899999999 9999999
Q ss_pred HHHHhhcCC
Q psy6801 209 YEHLNIRIP 217 (228)
Q Consensus 209 ~~~l~~~~~ 217 (228)
.+.|...++
T Consensus 201 ~~~l~~~l~ 209 (213)
T 4edh_A 201 DRLLPNLLE 209 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987764
No 26
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.78 E-value=1.2e-17 Score=132.12 Aligned_cols=175 Identities=15% Similarity=0.168 Sum_probs=112.2
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCc--ceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHH-HH-----
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNV--KHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDL-VK----- 76 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----- 76 (228)
..++.|+|+|+|||||||+++.|++.++. .++.. .....++.++.+++++..+.........-+ ..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~ 97 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH 97 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999973 44433 134467788888888887764333322111 11
Q ss_pred ------HHHhccCCceEEc----------CCCCCHHH-----HHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCC
Q psy6801 77 ------NEVKDLKCNYLLD----------GFPRTYDQ-----AMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASG 135 (228)
Q Consensus 77 ------~~l~~~~~~~ild----------g~p~~~~~-----~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g 135 (228)
..+.. +..+|+| |+|+...+ +..+...+..||++|||++|++++.+|+.+|... .
T Consensus 98 ~~~~i~~~l~~-g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~--~- 173 (229)
T 4eaq_A 98 LVLKVIPALKE-GKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD--Q- 173 (229)
T ss_dssp CCCCCHHHHHT-TCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHC-CCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCC--c-
Confidence 11222 6678889 88765332 2334444578999999999999999999998210 0
Q ss_pred cccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 136 RVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
.+.++....+.+++..+. ..+.+.| .+.+++||++.+ ++++++|.+.|..
T Consensus 174 ------------------------dr~e~~~~~~~~rv~~~y---~~l~~~~--~~~~~vIDa~~s~eev~~~I~~~l~~ 224 (229)
T 4eaq_A 174 ------------------------NRLDQEDLKFHEKVIEGY---QEIIHNE--SQRFKSVNADQPLENVVEDTYQTIIK 224 (229)
T ss_dssp -------------------------CCCHHHHHHHHHHHHHH---HHHTTTC--TTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ------------------------cchhhhhHHHHHHHHHHH---HHHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 012222334444443322 2222222 235889999999 9999999999988
Q ss_pred cCCC
Q psy6801 215 RIPP 218 (228)
Q Consensus 215 ~~~~ 218 (228)
.++.
T Consensus 225 ~l~~ 228 (229)
T 4eaq_A 225 YLEK 228 (229)
T ss_dssp HHTC
T ss_pred Hhcc
Confidence 7753
No 27
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.78 E-value=8.1e-19 Score=138.96 Aligned_cols=180 Identities=14% Similarity=0.122 Sum_probs=107.5
Q ss_pred cccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCC---CCCChHHH--------
Q psy6801 3 NTLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKG---LLVPDDLM-------- 71 (228)
Q Consensus 3 ~~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------- 71 (228)
+.|.++.|+|+|++||||||+++.|++.++...++...+.+ .+.++++|+.++.++..+ ..+.....
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R 100 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR--EPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAAR 100 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE--SSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec--CCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHH
Confidence 34677899999999999999999999998544333111222 235678899999888632 22333211
Q ss_pred ----HHHHHHHHhccCCceEEcCCC------------CCHHHHHHH---HhcCCCCCEEEEEEeCHHHHHHHHhcCccCC
Q psy6801 72 ----IDLVKNEVKDLKCNYLLDGFP------------RTYDQAMAL---FKNHLSPNCVMHINVPKEVIIDRLSKRWIHP 132 (228)
Q Consensus 72 ----~~~~~~~l~~~~~~~ildg~p------------~~~~~~~~l---~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~ 132 (228)
...+...+.+ +..+|+|.|. ....++..+ ...+..||++|||++|++++.+|+.+|..
T Consensus 101 ~~~~~~~I~paL~~-g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~-- 177 (236)
T 3lv8_A 101 VQLVENVIKPALAR-GEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE-- 177 (236)
T ss_dssp HHHHHHTHHHHHHT-TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C--
T ss_pred HHHHHHHHHHHHHc-CCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC--
Confidence 1222333333 6778888542 122333333 22346799999999999999999998821
Q ss_pred CCCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHH-HHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHH
Q psy6801 133 ASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRL-ETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYE 210 (228)
Q Consensus 133 ~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~ 210 (228)
.. +.......+.+++ ..|. .+.+.+ ..+++||++.+ ++|+++|.+
T Consensus 178 --~d------------------------r~E~~~~~~~~rv~~~y~----~la~~~---~~~~vIDa~~sieeV~~~I~~ 224 (236)
T 3lv8_A 178 --LD------------------------RIEKMDISFFERARERYL----ELANSD---DSVVMIDAAQSIEQVTADIRR 224 (236)
T ss_dssp --CC------------------------TTTTSCHHHHHHHHHHHH----HHHHHC---TTEEEEETTSCHHHHHHHHHH
T ss_pred --cc------------------------hhhhhHHHHHHHHHHHHH----HHHHHC---CCEEEEeCCCCHHHHHHHHHH
Confidence 00 1111112233333 3332 222222 23899999999 999999999
Q ss_pred HHhhcCCCCC
Q psy6801 211 HLNIRIPPLK 220 (228)
Q Consensus 211 ~l~~~~~~~~ 220 (228)
.|...+++.+
T Consensus 225 ~l~~~l~~~~ 234 (236)
T 3lv8_A 225 ALQDWLSQVN 234 (236)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhhc
Confidence 9999887654
No 28
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.78 E-value=1.5e-18 Score=136.59 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=105.0
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhCcc----eeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHH-------
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFNVK----HIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMI------- 72 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 72 (228)
|+.++.|+|+|++||||||+++.|++.++.. .+++ .+.+ .+.++++|+.+++++..+...+.....
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~ 98 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTR--EPGGTRLGETLREILLNQPMDLETEALLMFAGRR 98 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEE--SSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeec--CCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3467789999999999999999999998443 1111 0112 134678888898888877433332211
Q ss_pred ----HHHHHHHhccCCceEEcCCCC------------CHHHHHHHHh---cCCCCCEEEEEEeCHHHHHHHHhcCccCCC
Q psy6801 73 ----DLVKNEVKDLKCNYLLDGFPR------------TYDQAMALFK---NHLSPNCVMHINVPKEVIIDRLSKRWIHPA 133 (228)
Q Consensus 73 ----~~~~~~l~~~~~~~ildg~p~------------~~~~~~~l~~---~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~ 133 (228)
..+...+.+ +..+|+|.|.. ...++..+.. .+..||++|||++|++++.+|+.+|..
T Consensus 99 ~~~~~~i~p~l~~-g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~--- 174 (227)
T 3v9p_A 99 EHLALVIEPALAR-GDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM--- 174 (227)
T ss_dssp HHHHHTHHHHHHT-TCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC---
T ss_pred HHHHHHHHHHHHc-CCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC---
Confidence 122233333 66788896532 2333433332 246799999999999999999998821
Q ss_pred CCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHH-HHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHH
Q psy6801 134 SGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRL-ETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEH 211 (228)
Q Consensus 134 ~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~ 211 (228)
.. +.......+.+++ ..| ..+.+.+ .+.+++||++.+ ++|+++|.+.
T Consensus 175 -~d------------------------r~E~~~~ef~~rv~~~Y----~~la~~~--~~~~~vIDa~~s~eeV~~~I~~~ 223 (227)
T 3v9p_A 175 -PD------------------------KFESESDAFFARTRAEY----LRRAQEA--PHRFVIVDSSEPIAQIRKQLEGV 223 (227)
T ss_dssp -C---------------------------CCHHHHHHHHHHHHH----HHHHHHC--TTTEEEEETTSCHHHHHHHHHHH
T ss_pred -cc------------------------chhhhhHHHHHHHHHHH----HHHHHHh--cCCEEEEeCCCCHHHHHHHHHHH
Confidence 00 1111122333332 333 3333333 245889999999 9999999998
Q ss_pred Hhh
Q psy6801 212 LNI 214 (228)
Q Consensus 212 l~~ 214 (228)
|..
T Consensus 224 l~~ 226 (227)
T 3v9p_A 224 LAA 226 (227)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 29
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.76 E-value=1.5e-18 Score=135.58 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=109.9
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCccee-ehhHHHHHHHhccChhhHHHHHHHHCC-----CCCChHH--------
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHI-ATGDILRSHIAQNTTLGLKAKEYMNKG-----LLVPDDL-------- 70 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i-~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-------- 70 (228)
|.++.|+|+|++||||||+++.|++.+....+ ++ .+.+ .+.++++|+.+++++... ..+....
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~ 77 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTR--EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAA 77 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEE--SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeee--CCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHH
Confidence 35678999999999999999999999843322 11 1111 235678999999988732 2333321
Q ss_pred ----HHHHHHHHHhccCCceEEcCCCC------------CHHHHHHH---HhcCCCCCEEEEEEeCHHHHHHHHhcCccC
Q psy6801 71 ----MIDLVKNEVKDLKCNYLLDGFPR------------TYDQAMAL---FKNHLSPNCVMHINVPKEVIIDRLSKRWIH 131 (228)
Q Consensus 71 ----~~~~~~~~l~~~~~~~ildg~p~------------~~~~~~~l---~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~ 131 (228)
+...+...+.+ +..+|.|.|.. ...++..+ ...+..||++|||++|++++.+|+.+|..
T Consensus 78 R~~~~~~~i~paL~~-g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~- 155 (213)
T 4tmk_A 78 RVQLVETVIKPALAN-GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGE- 155 (213)
T ss_dssp HHHHHHHTHHHHHHT-TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHHHHC-CCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC-
Confidence 11223333443 77778886421 23333333 33346899999999999999999998821
Q ss_pred CCCCcccccCCCCCCCCCCCcccccccccCCC-CcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHH
Q psy6801 132 PASGRVYNLDFNAPKKPGIDDITGEKLIQRDD-DKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIY 209 (228)
Q Consensus 132 ~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~ 209 (228)
. . +.. ...+.+++-...|... .+ ..+.+++||++.+ ++|+++|.
T Consensus 156 --~-d------------------------r~E~~~~~f~~rv~~~y~~l----a~---~~~~~~vIDa~~s~eeV~~~I~ 201 (213)
T 4tmk_A 156 --L-D------------------------RIEQESFDFFNRTRARYLEL----AA---QDKSIHTIDATQPLEAVMDAIR 201 (213)
T ss_dssp --C-C------------------------TTTTSCHHHHHHHHHHHHHH----HH---TCTTEEEEETTSCHHHHHHHHH
T ss_pred --c-c------------------------chhhhHHHHHHHHHHHHHHH----HH---HCCcEEEECCCCCHHHHHHHHH
Confidence 0 0 111 1233333333344322 22 2245899999999 99999999
Q ss_pred HHHhhcCCC
Q psy6801 210 EHLNIRIPP 218 (228)
Q Consensus 210 ~~l~~~~~~ 218 (228)
+.|...++.
T Consensus 202 ~~l~~~l~~ 210 (213)
T 4tmk_A 202 TTVTHWVKE 210 (213)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999987743
No 30
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=2e-17 Score=127.91 Aligned_cols=168 Identities=17% Similarity=0.226 Sum_probs=103.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
.+..|+|+|++||||||+++.|++.++.++++.|+++..... ..+....... |..........++.. +.. ...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g--~~i~~~~~~~---~~~~~~~~e~~~l~~-l~~-~~~ 96 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH--KTVGELFTER---GEAGFRELERNMLHE-VAE-FEN 96 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SCHHHHHHHH---HHHHHHHHHHHHHHH-HTT-CSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC--CcHHHHHHhc---ChHHHHHHHHHHHHH-Hhh-cCC
Confidence 356899999999999999999999999999999998766432 2222221111 100001111122222 222 567
Q ss_pred eEEc---CCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHh-cCccCCCCCcccccCCCCCCCCCCCcccccccccC
Q psy6801 86 YLLD---GFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLS-KRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQR 161 (228)
Q Consensus 86 ~ild---g~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~-~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~ 161 (228)
+|++ |.+........+.. ++.+|||++|++++.+|+. .|...+. .
T Consensus 97 ~vi~~ggg~~~~~~~~~~l~~----~~~vi~L~~~~e~l~~Rl~~~~~~Rp~---------------------------~ 145 (199)
T 3vaa_A 97 VVISTGGGAPCFYDNMEFMNR----TGKTVFLNVHPDVLFRRLRIAKQQRPI---------------------------L 145 (199)
T ss_dssp EEEECCTTGGGSTTHHHHHHH----HSEEEEEECCHHHHHHHHHHTGGGCGG---------------------------G
T ss_pred cEEECCCcEEccHHHHHHHHc----CCEEEEEECCHHHHHHHHhcCCCCCCC---------------------------c
Confidence 7887 44544444444543 5789999999999999998 4421110 1
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCC-C-cchHHHHHHHHhhcC
Q psy6801 162 DDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNT-T-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~-~-e~v~~~i~~~l~~~~ 216 (228)
.....+.+.+++..+.... ...|... .++||++. + ++++++|.+.|...+
T Consensus 146 ~~~~~~~~~~~i~~~~~~r---~~~y~~a--d~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 146 QGKEDDELMDFIIQALEKR---APFYTQA--QYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp TTCCHHHHHHHHHHHHHHH---HHHHTTS--SEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred CCCChhhHHHHHHHHHHHH---HHHHhhC--CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 1233444555554444333 3345543 35677776 6 999999999998776
No 31
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.75 E-value=7.1e-17 Score=124.11 Aligned_cols=164 Identities=21% Similarity=0.252 Sum_probs=100.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHH-------HHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF---NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMI-------DLVKNE 78 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 78 (228)
.|+|+|++||||||+++.|++.+ |+.++.++. ...++.+..++..+..+...+..... ..+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~- 74 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE- 74 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-
Confidence 69999999999999999999999 998887633 34556677777777655443322111 11122
Q ss_pred Hhcc---CCceEEcCC----------CCC--HHH---HHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCccccc
Q psy6801 79 VKDL---KCNYLLDGF----------PRT--YDQ---AMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNL 140 (228)
Q Consensus 79 l~~~---~~~~ildg~----------p~~--~~~---~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~ 140 (228)
+... +..+|+|.| ++. ... ...+......||.+|||++|++++.+|+..| +
T Consensus 75 i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R--~--------- 143 (197)
T 2z0h_A 75 IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--N--------- 143 (197)
T ss_dssp HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----C---------
T ss_pred HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhcc--C---------
Confidence 3332 556777743 332 222 2223333457999999999999999999988 1
Q ss_pred CCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCC
Q psy6801 141 DFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIP 217 (228)
Q Consensus 141 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~ 217 (228)
+. +..+.+.+....|.. +...+ ...+++||++.+ ++++++|.+.+...+.
T Consensus 144 --------------------~~-~~~~~~~~~~~~~~~----~~~~~--~~~~~~Id~~~~~e~~~~~i~~~l~~~l~ 194 (197)
T 2z0h_A 144 --------------------RF-EKREFLERVREGYLV----LAREH--PERIVVLDGKRSIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp --------------------CC-CCHHHHHHHHHHHHH----HHHHC--TTTEEEEETTSCHHHHHHHHHHHTTCC--
T ss_pred --------------------cc-cHHHHHHHHHHHHHH----HHHhC--CCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 11 112222222333432 23333 234788999999 9999999999987663
No 32
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.75 E-value=1e-18 Score=136.08 Aligned_cols=173 Identities=14% Similarity=0.127 Sum_probs=108.2
Q ss_pred CCccc-ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHH-----
Q psy6801 1 MLNTL-LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDL----- 74 (228)
Q Consensus 1 m~~~~-~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 74 (228)
|+..| .+++|+|+|+|||||||+++.|++.++..++++ +.++. ...+++.+..+..++..+..++......+
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 2wwf_A 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYF-PNRETGIGQIISKYLKMENSMSNETIHLLFSANR 80 (212)
T ss_dssp TTCCCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred ccchhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEec-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 56544 578999999999999999999999998777766 23332 11235666777777765545554322211
Q ss_pred ------HHHHHhccCCceEEcCCCCCH--HHH-------HHH---HhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCc
Q psy6801 75 ------VKNEVKDLKCNYLLDGFPRTY--DQA-------MAL---FKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGR 136 (228)
Q Consensus 75 ------~~~~l~~~~~~~ildg~p~~~--~~~-------~~l---~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~ 136 (228)
+...+.. +..+|+|+++.+- .+. ..+ ......|+.+|||++|++++.+|+.+|. +
T Consensus 81 ~~~~~~i~~~l~~-~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~-----~- 153 (212)
T 2wwf_A 81 WEHMNEIKSLLLK-GIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE-----E- 153 (212)
T ss_dssp HTTHHHHHHHHHH-TCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS-----S-
T ss_pred HHHHHHHHHHHhC-CCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc-----c-
Confidence 2222322 6778999986431 111 112 1111368999999999999999986541 0
Q ss_pred ccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 137 VYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 137 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
+.. . +.+.+++........ . ....++||++.+ ++++++|.+.+...
T Consensus 154 ------------------------r~~-~-~~~~~~~~~~~~~~~------~-~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 154 ------------------------IYE-K-VETQKKIYETYKHFA------H-EDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp ------------------------TTC-S-HHHHHHHHHHGGGGT------T-CTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred ------------------------ccc-H-HHHHHHHHHHHHHHh------c-cCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 111 1 234444432222111 1 234788999988 99999999998765
No 33
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.75 E-value=7.3e-17 Score=124.90 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=104.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHH---HHHHHHHHHhccC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL---MIDLVKNEVKDLK 83 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~ 83 (228)
|++|+|+|++||||||+++.|++.+|..+++.|++..... ......|....+.. ....+...+.. +
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~~~-~ 86 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERLAS-R 86 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHHTS-S
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHHhc-C
Confidence 5689999999999999999999999999999987642210 11112232333321 22333333333 7
Q ss_pred CceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCC
Q psy6801 84 CNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDD 163 (228)
Q Consensus 84 ~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 163 (228)
..+|+|+..........+......|+.+|||++|.+++.+|+.+|... .
T Consensus 87 ~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~-------------------------------~ 135 (202)
T 3t61_A 87 EPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGH-------------------------------F 135 (202)
T ss_dssp SCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSS-------------------------------C
T ss_pred CCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhcc-------------------------------C
Confidence 789999876677777777766455679999999999999999998311 1
Q ss_pred CcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 164 DKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
...+.+...+..+.. .+. ....+.||++.+ ++++++|.+.|..
T Consensus 136 ~~~~~~~~~~~~~~~-------~~~-~~~~~~Id~~~~~~e~~~~I~~~l~~ 179 (202)
T 3t61_A 136 MPSSLLQTQLETLED-------PRG-EVRTVAVDVAQPLAEIVREALAGLAR 179 (202)
T ss_dssp CCHHHHHHHHHHCCC-------CTT-STTEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCC-------CCC-CCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 123333333322211 111 223678999988 9999999998864
No 34
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.73 E-value=4.4e-17 Score=126.62 Aligned_cols=184 Identities=14% Similarity=0.142 Sum_probs=98.1
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcc--eee----hhHHHHHHHhccC---hhhHHHHHHHHCCCCCChHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVK--HIA----TGDILRSHIAQNT---TLGLKAKEYMNKGLLVPDDLMIDLV 75 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~--~i~----~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (228)
|.+++|+|+|+|||||||+++.|++.++.. ++. .++.+++.+.... .........+.... ....+...+
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~i 79 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATD--FSDRYERYI 79 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHH--HHHHHHHTH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHH--HHHHHHHHH
Confidence 556789999999999999999999999874 443 2333333322110 00000000000000 000001111
Q ss_pred HHHHhccCCceEEcCCCCCH-----------HHHHHHHhcCCCCCEEEEEEeCHHHHHHHHh-cCccCCCCCcccccCCC
Q psy6801 76 KNEVKDLKCNYLLDGFPRTY-----------DQAMALFKNHLSPNCVMHINVPKEVIIDRLS-KRWIHPASGRVYNLDFN 143 (228)
Q Consensus 76 ~~~l~~~~~~~ildg~p~~~-----------~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~-~R~~~~~~g~~~~~~~~ 143 (228)
...+.. +..+|+|+||.+. ..+..+......|+++|||++|++++.+|+. +|.. .++ ++
T Consensus 80 ~~~l~~-g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~---~~~-~~---- 150 (213)
T 2plr_A 80 LPMLKS-GFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRK---IKP-QE---- 150 (213)
T ss_dssp HHHHHT-TCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCC---CCT-TT----
T ss_pred HHHHhC-CCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccc---ccc-cc----
Confidence 222333 6778999987542 1233343333458999999999999999998 7731 111 10
Q ss_pred CCCCCCCCcccccccccCCC--CcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 144 APKKPGIDDITGEKLIQRDD--DKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 144 ~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
++..+..+.+ +..+.+.+++..++.. +.... .+++||++.+ +++++.|.+.|...+
T Consensus 151 ----------~g~~~~~~~d~~e~~~~~~~r~~~~~~~------~~~~~-~~~~Id~~~~~e~v~~~I~~~l~~~~ 209 (213)
T 2plr_A 151 ----------AGADIFPGLSPEEGFLKYQGLITEVYDK------LVKDE-NFIVIDGTKTPKEIQIQIRKFVGELI 209 (213)
T ss_dssp ----------TTTTTCTTSCHHHHHHHHHHHHHHHHHH------HTTTT-TCEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred ----------cccccccccchhhhHHHHHHHHHHHHHH------HHhhC-CEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 0000000111 0112333343333221 11111 4688999999 999999999987654
No 35
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.73 E-value=7.2e-17 Score=124.82 Aligned_cols=169 Identities=11% Similarity=0.085 Sum_probs=104.3
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHh-CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHH-----------
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHF-NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMI----------- 72 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 72 (228)
+.++.|+|+|++||||||+++.|++.+ |+++++++.. ...++.++.+..++..+..+......
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~-----~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~ 76 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP-----QRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFA 76 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS-----CTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC-----CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999 5777775321 11344666677777655433332211
Q ss_pred HHHHHHHhccCCceEEcCCCCC-----------HHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccC
Q psy6801 73 DLVKNEVKDLKCNYLLDGFPRT-----------YDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLD 141 (228)
Q Consensus 73 ~~~~~~l~~~~~~~ildg~p~~-----------~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~ 141 (228)
..+...+.. +..+|+|+|+.+ ......+......||.+|||++|++++.+ +|..+
T Consensus 77 ~~i~~~l~~-~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d---------- 142 (204)
T 2v54_A 77 SFIQEQLEQ-GITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEE---------- 142 (204)
T ss_dssp HHHHHHHHT-TCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSS----------
T ss_pred HHHHHHHHC-CCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCcc----------
Confidence 112223333 667888988753 22223333322469999999999998876 34100
Q ss_pred CCCCCCCCCCcccccccccCCCCcHHHHHHHHHH-HHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCCCC
Q psy6801 142 FNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLET-FDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIPPL 219 (228)
Q Consensus 142 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~~~ 219 (228)
+.. . ..+.+++.. |.... ..+ ...+++||++.+ ++++++|.+.+...+...
T Consensus 143 -------------------~~e-~-~~~~~rl~~~y~~~~----~~~--~~~~~~Id~~~~~~~v~~~i~~~l~~~l~~~ 195 (204)
T 2v54_A 143 -------------------IYE-D-VTFQQKVLQEYKKMI----EEG--DIHWQIISSEFEEDVKKELIKNIVIEAIHTV 195 (204)
T ss_dssp -------------------TTC-C-SHHHHHHHHHHHHHH----TTC--SSCEEEECTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred -------------------ccc-H-HHHHHHHHHHHHHHH----HhC--CCcEEEEECCCCHHHHHHHHHHHHHHHHhhc
Confidence 000 1 133444433 32221 111 234789999989 999999999998777543
No 36
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.73 E-value=2.4e-16 Score=121.68 Aligned_cols=165 Identities=19% Similarity=0.221 Sum_probs=99.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh---CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHH----------HHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF---NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL----------MIDL 74 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 74 (228)
|-|+|+|++||||||+++.|++.+ |..++.+. .+.+++.+..++..+..+...+... ....
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr------eP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR------EPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE------SSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE------CCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999988 44444331 2335566666666655543322221 1122
Q ss_pred HHHHHhccCCceEEcCCCC------------CHHHHH---HHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccc
Q psy6801 75 VKNEVKDLKCNYLLDGFPR------------TYDQAM---ALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYN 139 (228)
Q Consensus 75 ~~~~l~~~~~~~ildg~p~------------~~~~~~---~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~ 139 (228)
+...+.. +..+|.|.|.. ...... .+...+..||++|||++|++++.+|...|.
T Consensus 75 I~~~L~~-g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d---------- 143 (197)
T 3hjn_A 75 IKQYLSE-GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN---------- 143 (197)
T ss_dssp HHHHHTT-TCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C----------
T ss_pred HHHHHHC-CCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC----------
Confidence 3333333 66677786521 122222 233335779999999999999999965541
Q ss_pred cCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCC
Q psy6801 140 LDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIP 217 (228)
Q Consensus 140 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~ 217 (228)
+. +..+.+++-...|. .+.+.+ ...+++||++++ ++|+++|.+.|..+++
T Consensus 144 ---------------------r~-e~~ef~~rv~~~y~----~la~~~--~~~~~~IDa~~~~eeV~~~I~~~i~~rl~ 194 (197)
T 3hjn_A 144 ---------------------RF-EKREFLERVREGYL----VLAREH--PERIVVLDGKRSIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp ---------------------TT-CCHHHHHHHHHHHH----HHHHHC--TTTEEEEETTSCHHHHHHHHHHHHSCC--
T ss_pred ---------------------cc-ccHHHHHHHHHHHH----HHHHhC--CCCEEEEcCCCCHHHHHHHHHHHHHHHhC
Confidence 11 12222222223333 333333 234889999999 9999999999988764
No 37
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.73 E-value=1.2e-16 Score=122.16 Aligned_cols=113 Identities=16% Similarity=0.284 Sum_probs=70.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHHHHHHhccC---hhhHHHHHHHHCCCCCC--hHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDILRSHIAQNT---TLGLKAKEYMNKGLLVP--DDLMIDLV 75 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~ 75 (228)
.++.|+|+|+|||||||+++.|+++++ +++++++++++....... +... ...... ...+...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 74 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQ-------MRKMDPETQKRIQKMA 74 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGG-------GSSCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHH-------HhcCCHHHHHHHHHHH
Confidence 456899999999999999999999998 999999999887543211 1100 000000 11112222
Q ss_pred HHHHhcc--CCceEEcCCCCCHHHH--------HHHHhcCCCCCEEEEEEeCHHHHHH-HHhc
Q psy6801 76 KNEVKDL--KCNYLLDGFPRTYDQA--------MALFKNHLSPNCVMHINVPKEVIID-RLSK 127 (228)
Q Consensus 76 ~~~l~~~--~~~~ildg~p~~~~~~--------~~l~~~~~~~~~vi~l~~~~e~~~~-R~~~ 127 (228)
...+... +..+|+||++....+. ..+.. ..|+++|||++|++++.+ |+..
T Consensus 75 ~~~i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~~~~~~~~rRl~~ 135 (192)
T 1kht_A 75 GRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE--LNPDLIIVVETTGDEILMRRMSD 135 (192)
T ss_dssp HHHHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH--HCCSEEEEEECCHHHHHHHHHTS
T ss_pred HHHHHhhccCCeEEEccceeccccccccccCcHHHHhc--cCCCEEEEEeCCHHHHHHHHhhh
Confidence 2222211 6689999865311100 11222 247899999999999996 8877
No 38
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.72 E-value=2.4e-16 Score=118.56 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=96.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCceE
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNYL 87 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 87 (228)
++|+|+|+|||||||+++.|++.+++++++.|.+..... .... .+ .. ...+.. +..+|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~~~----~~------------~~-~~~l~~-~~~vi 59 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----GNEK----LF------------EH-FNKLAD-EDNVI 59 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----CHHH----HH------------HH-HHHHTT-CCSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----HHHH----HH------------HH-HHHHHh-CCCeE
Confidence 479999999999999999999999999999987654321 0000 00 00 111222 44455
Q ss_pred EcCC---------------CCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCc
Q psy6801 88 LDGF---------------PRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDD 152 (228)
Q Consensus 88 ldg~---------------p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~ 152 (228)
.|.+ .........+......|+.+|||++|++++.+|+..|.
T Consensus 60 ~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~----------------------- 116 (173)
T 3kb2_A 60 IDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG----------------------- 116 (173)
T ss_dssp EESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHS-----------------------
T ss_pred EeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC-----------------------
Confidence 5521 11233344444433568999999999999999999871
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCC-C-cchHHHHHHHHhhcCCC
Q psy6801 153 ITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNT-T-DEIWPRIYEHLNIRIPP 218 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~-~-e~v~~~i~~~l~~~~~~ 218 (228)
+.....+.+.+....| ......|. ...++||++. + ++++++|.+.+.....+
T Consensus 117 --------r~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~~~~ 170 (173)
T 3kb2_A 117 --------DEYIEGKDIDSILELY----REVMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELEHHH 170 (173)
T ss_dssp --------CSCCCHHHHHHHHHHH----HHHHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHGGGC
T ss_pred --------CcchhhhHHHHHHHHH----HHHHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCCCcc
Confidence 1111222222222333 33334443 2477899985 7 99999999999987643
No 39
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.72 E-value=1.6e-16 Score=121.07 Aligned_cols=169 Identities=11% Similarity=0.135 Sum_probs=93.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCce
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
++.|+|+|+|||||||+++.|++.+++++++.|+++..... .+........ |..........++.. +.. ...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~~~~~~~~~---g~~~~~~~~~~~~~~-~~~-~~~~ 77 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--ADIAWIFEME---GEAGFRRREREMIEA-LCK-LDNI 77 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SCHHHHHHHH---HHHHHHHHHHHHHHH-HHH-SSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CChhhHHHHh---CHHHHHHHHHHHHHH-HHh-cCCc
Confidence 45799999999999999999999999999999888776432 1121111111 100001112222222 222 3334
Q ss_pred EE-cC--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHH--hcCccCCCCCcccccCCCCCCCCCCCcccccccccC
Q psy6801 87 LL-DG--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL--SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQR 161 (228)
Q Consensus 87 il-dg--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~--~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~ 161 (228)
|+ .| .+........+... ..+|||++|++++.+|+ ..+.. +
T Consensus 78 vi~~gg~~~~~~~~~~~l~~~----~~vi~L~~~~e~l~~Rl~~~~~~~------------------------------r 123 (185)
T 3trf_A 78 ILATGGGVVLDEKNRQQISET----GVVIYLTASIDTQLKRIGQKGEMR------------------------------R 123 (185)
T ss_dssp EEECCTTGGGSHHHHHHHHHH----EEEEEEECCHHHHHHHHHCCTTCS------------------------------S
T ss_pred EEecCCceecCHHHHHHHHhC----CcEEEEECCHHHHHHHHhhcCCCC------------------------------C
Confidence 44 33 44444445555443 37999999999999999 44311 1
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCC-C-cchHHHHHHHHhhcCCCCC
Q psy6801 162 DDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNT-T-DEIWPRIYEHLNIRIPPLK 220 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~-~-e~v~~~i~~~l~~~~~~~~ 220 (228)
+..........+........ ..|.... -++||++. + +++++.|.+.+...+....
T Consensus 124 p~~~~~~~~~~l~~~~~~r~---~~y~~~a-d~~Idt~~~~~~e~~~~I~~~l~~~~~~~~ 180 (185)
T 3trf_A 124 PLFIKNNSKEKLQQLNEIRK---PLYQAMA-DLVYPTDDLNPRQLATQILVDIKQTYSDLE 180 (185)
T ss_dssp CCCCCHHHHHHHHHHHHHHH---HHHHHHC-SEEEECTTCCHHHHHHHHHHHSCC------
T ss_pred CCCCCCCHHHHHHHHHHHHH---HHHhhcC-CEEEECCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 11111112222322222222 2333211 25677776 6 9999999999988875543
No 40
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.72 E-value=2.6e-16 Score=120.38 Aligned_cols=165 Identities=13% Similarity=0.187 Sum_probs=94.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHHHHHHh-ccChhhHHHHHHHHCCCCCCh--HHHHH----HH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDILRSHIA-QNTTLGLKAKEYMNKGLLVPD--DLMID----LV 75 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~ 75 (228)
+.|+|+|+|||||||+++.|+++++ +.+++.++++++.+. .....+. ..+ +...+. ..+.. .+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999998 888998888876552 1111100 000 111111 11111 12
Q ss_pred HHHH--hccCCceEEcCCCCCHHH--------HHHHHhcCCCCCEEEEEEeCHHHHHHH-Hhc--CccCCCCCcccccCC
Q psy6801 76 KNEV--KDLKCNYLLDGFPRTYDQ--------AMALFKNHLSPNCVMHINVPKEVIIDR-LSK--RWIHPASGRVYNLDF 142 (228)
Q Consensus 76 ~~~l--~~~~~~~ildg~p~~~~~--------~~~l~~~~~~~~~vi~l~~~~e~~~~R-~~~--R~~~~~~g~~~~~~~ 142 (228)
...+ .. +..+|+|+++....+ ...+.. ..|+.+|||++|++++.+| +.. |..
T Consensus 77 ~~~l~~~~-~~~vi~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~l~~~~~~~~~rr~~~~~R~~------------ 141 (194)
T 1nks_A 77 AEEARAGG-EGYLFIDTHAVIRTPSGYLPGLPSYVITE--INPSVIFLLEADPKIILSRQKRDTTRNR------------ 141 (194)
T ss_dssp HHHHHHTC-SSEEEEEECSEEEETTEEEESSCHHHHHH--HCCSEEEEEECCHHHHHHHHHHCTTTCC------------
T ss_pred HHHhhccC-CCEEEECCchhhccccccccCCCHHHHHh--cCCCEEEEEeCCHHHHHHHHHhhcccCC------------
Confidence 2333 23 778999987432222 122222 2489999999999998866 666 610
Q ss_pred CCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEE-eCCCC-cchHHHHHHHH
Q psy6801 143 NAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTF-TGNTT-DEIWPRIYEHL 212 (228)
Q Consensus 143 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~i-d~~~~-e~v~~~i~~~l 212 (228)
......+.+.. .......+......|.. ..+++| |++.+ ++++++|.+.|
T Consensus 142 ------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 142 ------------------NDYSDESVILE-TINFARYAATASAVLAG-STVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp ------------------CCCCSHHHHHH-HHHHHHHHHHHHHHHHT-CEEEEEECCSSCHHHHHHHHHHHH
T ss_pred ------------------CCccCHHHHHH-HHHHHHHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence 01112222111 11111222223333422 346788 98888 99999998876
No 41
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.71 E-value=3.2e-17 Score=125.64 Aligned_cols=121 Identities=9% Similarity=0.068 Sum_probs=75.5
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccC
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLK 83 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (228)
|..++.|+|+|+|||||||+++.|++.+++++++.|++...........+......+.. . ....+...+...+.. +
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~-g 77 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA--T-AIMMLYHTAATILQS-G 77 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH--H-HHHHHHHHHHHHHHT-T
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH--H-HHHHHHHHHHHHHhC-C
Confidence 44567899999999999999999999999999999666433222100000000000000 0 001111223333433 7
Q ss_pred CceEEcCCCCCHH---HHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 84 CNYLLDGFPRTYD---QAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 84 ~~~ildg~p~~~~---~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.++|+|++..... ....+...+..|+.+|||++|++++.+|+..|
T Consensus 78 ~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R 125 (193)
T 2rhm_A 78 QSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSR 125 (193)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHH
T ss_pred CeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHh
Confidence 8899999763221 22224444456889999999999999999888
No 42
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.71 E-value=1.2e-16 Score=124.40 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=98.5
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHH-----------
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMI----------- 72 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 72 (228)
|+.+++|+|+|+|||||||+++.|++.++..+++++.+ ++ ....++.+..+..++..+..++.....
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~ 83 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RF-PERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQV 83 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ES-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe-eC-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999987655554211 11 011245566666666554444443221
Q ss_pred HHHHHHHhccCCceEEcCCC------------CCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCccccc
Q psy6801 73 DLVKNEVKDLKCNYLLDGFP------------RTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNL 140 (228)
Q Consensus 73 ~~~~~~l~~~~~~~ildg~p------------~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~ 140 (228)
..+...+.. +..+|+|.+. ........+......|+.+|||++|++++.+|+.+| .+
T Consensus 84 ~~i~~~l~~-~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~-~~--------- 152 (215)
T 1nn5_A 84 PLIKEKLSQ-GVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG-HE--------- 152 (215)
T ss_dssp HHHHHHHHT-TCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------C---------
T ss_pred HHHHHHHHC-CCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-cc---------
Confidence 122333333 6678888532 122223223322245899999999999999998643 10
Q ss_pred CCCCCCCCCCCcccccccccCCCCcHHHHHHHHH-HHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcCC
Q psy6801 141 DFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLE-TFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRIP 217 (228)
Q Consensus 141 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~ 217 (228)
+. +.. .+.+++. .|... ...+ ...+++||++.+ ++++++|.+.+...+.
T Consensus 153 --------------------~~-~~~-~~~~~~~~~~~~~----~~~~--~~~~~~Id~~~~~e~~~~~i~~~l~~~l~ 203 (215)
T 1nn5_A 153 --------------------RY-ENG-AFQERALRCFHQL----MKDT--TLNWKMVDASKSIEAVHEDIRVLSEDAIA 203 (215)
T ss_dssp --------------------TT-CSH-HHHHHHHHHHHHH----TTCT--TSCEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------cc-chH-HHHHHHHHHHHHH----HHhC--CCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 11 111 2222222 22111 1111 234688999888 9999999998887664
No 43
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.70 E-value=3.4e-16 Score=118.57 Aligned_cols=159 Identities=15% Similarity=0.097 Sum_probs=88.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHH-HhCcceeehhHHHHHHHhccCh-----hhHHHHHHHHCCCCCChHHHHHHHHHHH-
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIATGDILRSHIAQNTT-----LGLKAKEYMNKGLLVPDDLMIDLVKNEV- 79 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~-~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 79 (228)
|..|+|+|+|||||||+|+.|++ .+++.+++.| .++..+...+. +....... ........+...+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d-~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH-HHHHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence 56799999999999999999999 6899999985 45554433211 11111011 1223345555566
Q ss_pred --hccCCceEEcCCCCCHHHHHHHHhc---CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccc
Q psy6801 80 --KDLKCNYLLDGFPRTYDQAMALFKN---HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDIT 154 (228)
Q Consensus 80 --~~~~~~~ildg~p~~~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~ 154 (228)
.. +.++|+|+++.+..+...+... ...+..+|||++|++++.+|+..|..
T Consensus 74 ~~~~-g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~------------------------ 128 (181)
T 1ly1_A 74 GGDS-VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT------------------------ 128 (181)
T ss_dssp SCSS-CCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG------------------------
T ss_pred hccC-CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc------------------------
Confidence 33 7889999988876655544321 12244799999999999999999821
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCCcchHHHHHHHHhh
Q psy6801 155 GEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTTDEIWPRIYEHLNI 214 (228)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~e~v~~~i~~~l~~ 214 (228)
.....+.+.+++..|.... .+ .. +++|++.++++...|...+..
T Consensus 129 -------~~~~~~~i~~~~~~~~~~~-----~~---~~-~~id~~~~~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 129 -------KAVPIDVLRSMYKSMREYL-----GL---PV-YNGTPGKPKAVIFDVDGTLAK 172 (181)
T ss_dssp -------GCCCHHHHHHHHHHHHHHH-----TC---CC-C--------------------
T ss_pred -------CCCCHHHHHHHHHHhhccC-----CC---Cc-cccCCCCCceeeehhhhhhhc
Confidence 1234566777777775431 11 11 237776657777777776654
No 44
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.70 E-value=1.6e-16 Score=121.06 Aligned_cols=109 Identities=20% Similarity=0.270 Sum_probs=67.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHH-CCCCCChHHHHHHHHHHHhccCCc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMN-KGLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
+++|+|+|+|||||||+|+.|++.+|+++++.|++++.... .+. .+.+. .|...........+...+. ...
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~~~~~--~~~ 73 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG--RSI----ADIFATDGEQEFRRIEEDVVRAALA--DHD 73 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS--SCH----HHHHHHHCHHHHHHHHHHHHHHHHH--HCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC--CCH----HHHHHHhChHHHHHHHHHHHHHHHh--cCC
Confidence 35799999999999999999999999999999998776532 111 11121 1211111222222222222 333
Q ss_pred eEE-cC--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 86 YLL-DG--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 86 ~il-dg--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+|+ +| +.........+. .+.+|||++|++++.+|+..|
T Consensus 74 ~vi~~g~~~v~~~~~~~~l~-----~~~vV~L~~~~e~~~~Rl~~r 114 (184)
T 2iyv_A 74 GVLSLGGGAVTSPGVRAALA-----GHTVVYLEISAAEGVRRTGGN 114 (184)
T ss_dssp SEEECCTTGGGSHHHHHHHT-----TSCEEEEECCHHHHHHHTTCC
T ss_pred eEEecCCcEEcCHHHHHHHc-----CCeEEEEeCCHHHHHHHHhCC
Confidence 444 34 222222222222 468999999999999999988
No 45
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.69 E-value=7.3e-16 Score=120.39 Aligned_cols=173 Identities=14% Similarity=0.190 Sum_probs=109.0
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCC-CCChHHH-----------HH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL-LVPDDLM-----------ID 73 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~ 73 (228)
.++.|+|+|++||||||+++.|++.++..+.-+ +. ...++++|+.++.++.... ....... ..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~----~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL----KF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE----ES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEE----Ee-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999998632211 21 1246788999998887653 2222111 11
Q ss_pred HHHHHHhccCCceEEcCCCC--------------CHHHHHHHHhcCCCCCEEEEE-EeCHHHHHHHHhcCccCCCCCccc
Q psy6801 74 LVKNEVKDLKCNYLLDGFPR--------------TYDQAMALFKNHLSPNCVMHI-NVPKEVIIDRLSKRWIHPASGRVY 138 (228)
Q Consensus 74 ~~~~~l~~~~~~~ildg~p~--------------~~~~~~~l~~~~~~~~~vi~l-~~~~e~~~~R~~~R~~~~~~g~~~ 138 (228)
.+...+.+ +..+|.|.|.. ...++..+...+..||++||| ++|++++.+|+..| ++
T Consensus 79 ~I~paL~~-g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~------~d-- 149 (216)
T 3tmk_A 79 KIKKDLLE-GKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG------DE-- 149 (216)
T ss_dssp HHHHHHHT-TCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS------CC--
T ss_pred HHHHHHHc-CCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC------cc--
Confidence 22333333 66777786422 233333333334679999999 99999998886543 11
Q ss_pred ccCCCCCCCCCCCcccccccccCCCCcHHHHHHHH-HHHHhcHHHHHHHhhhCCcEEEEe-CCCC-cchHHHHHHHHhhc
Q psy6801 139 NLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRL-ETFDQTIKPLLDYYDNREVLDTFT-GNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 139 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~i~id-~~~~-e~v~~~i~~~l~~~ 215 (228)
+- +. ..+.+++ ..|......... + ....+++|| ++.+ ++|.++|.+.|...
T Consensus 150 ----------------------r~-E~-~~f~~rvr~~Y~~la~~~~~-~-~~~~~~vID~a~~s~eeV~~~I~~~i~~~ 203 (216)
T 3tmk_A 150 ----------------------RY-ET-VKFQEKVKQTFMKLLDKEIR-K-GDESITIVDVTNKGIQEVEALIWQIVEPV 203 (216)
T ss_dssp ----------------------TT-CC-HHHHHHHHHHHHHHHHHHHH-T-TCCSEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ----------------------cc-cH-HHHHHHHHHHHHHHHHhccc-c-CCCCEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 11 12 2344443 334333322111 1 234689999 8999 99999999999988
Q ss_pred CCC
Q psy6801 216 IPP 218 (228)
Q Consensus 216 ~~~ 218 (228)
+..
T Consensus 204 l~~ 206 (216)
T 3tmk_A 204 LST 206 (216)
T ss_dssp HHS
T ss_pred Hhc
Confidence 865
No 46
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.69 E-value=9.4e-17 Score=125.92 Aligned_cols=171 Identities=15% Similarity=0.068 Sum_probs=94.2
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCc-ceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHH-----------
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNV-KHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMI----------- 72 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 72 (228)
..++.|+|+|++||||||+++.|++.++. ..+++-.+.+ .+.++++|+.+++++............
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tr--eP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~ 96 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTR--EPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF 96 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEE--SSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeee--CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999998865 3222200001 234567788888877753223332111
Q ss_pred -HHHHHHHhccCCceEEcCCCC------------CHHHHHHHHhcC--CCCCEEEEEEeCHHHHHHHHhcCccCCCCCcc
Q psy6801 73 -DLVKNEVKDLKCNYLLDGFPR------------TYDQAMALFKNH--LSPNCVMHINVPKEVIIDRLSKRWIHPASGRV 137 (228)
Q Consensus 73 -~~~~~~l~~~~~~~ildg~p~------------~~~~~~~l~~~~--~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~ 137 (228)
..+...+.+ +..+|+|.|.. ...++..+.... ..||++|||++|++++.+|+ .| + +
T Consensus 97 ~~~I~paL~~-g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~r--d----r- 167 (223)
T 3ld9_A 97 VKIIKPSLMQ-KKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CK--N----G- 167 (223)
T ss_dssp HHTHHHHHHT-TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC--------------------
T ss_pred HHHHHHHHhc-CCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-cc--C----c-
Confidence 112233333 66677786421 234444443321 47999999999999999998 43 1 0
Q ss_pred cccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 138 YNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 138 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
|+ .... .+.+++. ..+..+.+.+. +.+++||++.+ ++| ++|.+.|...+
T Consensus 168 ~E-----------------------~~~~-e~~~rv~---~~y~~la~~~~--~~~~vIDa~~sieeV-~~I~~~l~~~l 217 (223)
T 3ld9_A 168 YE-----------------------FADM-EFYYRVR---DGFYDIAKKNP--HRCHVITDKSETYDI-DDINFVHLEVI 217 (223)
T ss_dssp ---------------------------CH-HHHHHHH---HHHHHHHHHCT--TTEEEEESSCSSSCC-CHHHHHHHHHH
T ss_pred cc-----------------------cchH-HHHHHHH---HHHHHHHHHCC--CCEEEEcCCCCHHHH-HHHHHHHHHHH
Confidence 10 0112 2223322 22233333342 35889999999 999 99999988765
No 47
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.68 E-value=7.5e-15 Score=110.50 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=94.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCce
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
|++|+|+|+|||||||+|+.|++.+++++++.|++++... +.+....+.. .|.......... +...+. ...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~~---~~~~~~~~~~~~-~~~~l~--~~~~ 73 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVADVVAA---EGWPGFRRRESE-ALQAVA--TPNR 73 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHHHHHHH---HHHHHHHHHHHH-HHHHHC--CSSE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHHHHHHH---cCHHHHHHHHHH-HHHHhh--cCCe
Confidence 3579999999999999999999999999999988877642 2222221111 010000111111 112232 3456
Q ss_pred EEc-C--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHh--cCccCCCCCcccccCCCCCCCCCCCcccccccccC
Q psy6801 87 LLD-G--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLS--KRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQR 161 (228)
Q Consensus 87 ild-g--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~--~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~ 161 (228)
|++ | .+........+.. ++.+|||++|++++.+|+. .|..+ +
T Consensus 74 vi~~g~~~~~~~~~~~~l~~----~~~~i~l~~~~e~~~~R~~~~~r~~~-----------------------------r 120 (173)
T 1e6c_A 74 VVATGGGMVLLEQNRQFMRA----HGTVVYLFAPAEELALRLQASLQAHQ-----------------------------R 120 (173)
T ss_dssp EEECCTTGGGSHHHHHHHHH----HSEEEEEECCHHHHHHHHHHHHCSCC-----------------------------C
T ss_pred EEECCCcEEeCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhccCCCC-----------------------------C
Confidence 664 4 2223333333432 4799999999999999998 77210 1
Q ss_pred CCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCC-CC-cchHHHHHHHHh
Q psy6801 162 DDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGN-TT-DEIWPRIYEHLN 213 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~-~~-e~v~~~i~~~l~ 213 (228)
+....+...+++..+..... ..|... .++||++ .+ +++.+.|.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 121 PTLTGRPIAEEMEAVLRERE---ALYQDV--AHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp CCTTHHHHHHHHHHHHHHHH---HHHHHH--CSEEEETTSCHHHHHHHHHHHTT
T ss_pred CcCCCCCHHHHHHHHHHHHH---HHHHhC--cEEEECCCCCHHHHHHHHHHHhc
Confidence 11122333444544433322 233332 3467877 57 999999988775
No 48
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.67 E-value=4.4e-16 Score=116.83 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=69.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHH-CCCCCChHHHHHHHHHHHhccCCce
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMN-KGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
|+|+|+|+|||||||+|+.|++.+++++++.|++.+.... ..+.+.+. .|....... ...+...+.. ...+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g------~~~~~~~~~~~~~~~~~~-~~~~l~~l~~-~~~~ 72 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG------LSIPQIFEKKGEAYFRKL-EFEVLKDLSE-KENV 72 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHSCHHHHHHH-HHHHHHHHTT-SSSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC------CCHHHHHHHhChHHHHHH-HHHHHHHHhc-cCCe
Confidence 3799999999999999999999999999999988776532 11222222 121111111 1112223332 4556
Q ss_pred EEc-C--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 87 LLD-G--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 87 ild-g--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
|++ | .+........+.. ++.+|||++|++++.+|+..|
T Consensus 73 Vi~~g~~~~~~~~~~~~l~~----~~~~i~l~~~~e~~~~R~~~r 113 (168)
T 2pt5_A 73 VISTGGGLGANEEALNFMKS----RGTTVFIDIPFEVFLERCKDS 113 (168)
T ss_dssp EEECCHHHHTCHHHHHHHHT----TSEEEEEECCHHHHHHHCBCT
T ss_pred EEECCCCEeCCHHHHHHHHc----CCEEEEEECCHHHHHHHHhCC
Confidence 665 4 2223333333432 689999999999999999887
No 49
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.67 E-value=2e-15 Score=117.07 Aligned_cols=163 Identities=15% Similarity=0.210 Sum_probs=93.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCC-----CC--------------
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLL-----VP-------------- 67 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------------- 67 (228)
|++|+|+|++||||||+++.|++ +|.++++.|++.+....++.+....+...+..... +.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 35799999999999999999988 99999999998876443332222222222211100 00
Q ss_pred ----hHH----HHHHHHHHHhcc-CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCccc
Q psy6801 68 ----DDL----MIDLVKNEVKDL-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVY 138 (228)
Q Consensus 68 ----~~~----~~~~~~~~l~~~-~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~ 138 (228)
... +...+.+.+... +.++|+|+. ..... . +.. .+|.+|||++|++++.+|+..|.
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~-~l~e~-~-~~~---~~d~vi~l~~~~e~~~~Rl~~R~--------- 145 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVP-LLIEN-K-LTA---LCDRILVVDVSPQTQLARSAQRD--------- 145 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECT-TTTTT-T-CGG---GCSEEEEEECCHHHHHHHHC------------
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCEEEEEec-hhhhc-C-cHh---hCCEEEEEECCHHHHHHHHHHcC---------
Confidence 001 111111223222 456777873 11111 1 222 26899999999999999999882
Q ss_pred ccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-c----chHHHHHHHHh
Q psy6801 139 NLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-D----EIWPRIYEHLN 213 (228)
Q Consensus 139 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e----~v~~~i~~~l~ 213 (228)
+...+.+.+++.. + .+....|...+ ++||++.+ + ++.++|.+.+.
T Consensus 146 ------------------------~~~~e~~~~r~~~---q-~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~~~~~ 195 (206)
T 1jjv_A 146 ------------------------NNNFEQIQRIMNS---Q-VSQQERLKWAD--DVINNDAELAQNLPHLQQKVLELHQ 195 (206)
T ss_dssp --------------------------CHHHHHHHHHH---S-CCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCHHHHHHHHHh---c-CChHHHHHhCC--EEEECCCCccccHHHHHHHHHHHHH
Confidence 1234455555543 1 12233344333 56788878 9 99999988876
Q ss_pred hc
Q psy6801 214 IR 215 (228)
Q Consensus 214 ~~ 215 (228)
..
T Consensus 196 ~~ 197 (206)
T 1jjv_A 196 FY 197 (206)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 50
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.66 E-value=1e-15 Score=119.80 Aligned_cols=165 Identities=16% Similarity=0.192 Sum_probs=95.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHC-----CCCCChHHHH--------
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK-----GLLVPDDLMI-------- 72 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------- 72 (228)
.+++|+|+|++||||||+++.|++ +|+++++.|++.+....++......+...+.. ...+....+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 356899999999999999999998 99999999998877544433333333333211 0112211111
Q ss_pred ----------HHHH----HHHhcc-CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcc
Q psy6801 73 ----------DLVK----NEVKDL-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRV 137 (228)
Q Consensus 73 ----------~~~~----~~l~~~-~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~ 137 (228)
..+. ..+... +..+|+++ |...... +. ..+|.+|||++|++++.+|+..|.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~--~~---~~~d~vi~l~~~~e~~~~Rl~~R~-------- 147 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENS--LY---KKANRVLVVDVSPETQLKRTMQRD-------- 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT--GG---GGCSEEEEEECCHHHHHHHHHHHH--------
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-eeeeccC--cc---ccCCEEEEEECCHHHHHHHHHHcC--------
Confidence 1111 112221 23344444 3322211 22 237899999999999999998871
Q ss_pred cccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 138 YNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 138 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
....+.+.+++..... ...++...+ ++||++.+ +++.++|.+.+...+
T Consensus 148 -------------------------~~~~~~~~~~~~~~~~----~~~~~~~ad--~vId~~~~~~~~~~~I~~~l~~~~ 196 (218)
T 1vht_A 148 -------------------------DVTREHVEQILAAQAT----REARLAVAD--DVIDNNGAPDAIASDVARLHAHYL 196 (218)
T ss_dssp -------------------------TCCHHHHHHHHHHSCC----HHHHHHHCS--EEEECSSCTTSHHHHHHHHHHHHH
T ss_pred -------------------------CCCHHHHHHHHHhcCC----hHHHHHhCC--EEEECCCCHHHHHHHHHHHHHHHH
Confidence 1123444444433111 111222232 56888878 999999988887543
No 51
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.65 E-value=4.4e-16 Score=118.29 Aligned_cols=110 Identities=20% Similarity=0.361 Sum_probs=72.1
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccC
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLK 83 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (228)
++.+..|+|+|+|||||||+++.|++.+++.++++|++++... .....+.. . .........+...+...+. .
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~--~ 79 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ-LYDGYDEE---Y--DCPILDEDRVVDELDNQMR--E 79 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT-CEEEEETT---T--TEEEECHHHHHHHHHHHHH--H
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcc-hhhhhhhh---h--cCccCChHHHHHHHHHHHh--c
Confidence 3456689999999999999999999999999999999877651 11111100 0 0001223334444444444 3
Q ss_pred CceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 84 CNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 84 ~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.++|+|...... +.. ..++.+|||++|++++.+|+..|
T Consensus 80 g~~vv~~~~~~~-----~~~--~~~~~vi~L~~~~e~l~~R~~~r 117 (180)
T 3iij_A 80 GGVIVDYHGCDF-----FPE--RWFHIVFVLRTDTNVLYERLETR 117 (180)
T ss_dssp CCEEEECSCCTT-----SCG--GGCSEEEEEECCHHHHHHHHHHT
T ss_pred CCEEEEechhhh-----cch--hcCCEEEEEECCHHHHHHHHHHc
Confidence 467777543211 000 11689999999999999999998
No 52
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.65 E-value=1.6e-15 Score=115.82 Aligned_cols=110 Identities=19% Similarity=0.351 Sum_probs=72.5
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH-hCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCC---ChHHHHHHHHHHHh
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH-FNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV---PDDLMIDLVKNEVK 80 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~ 80 (228)
+.+++|+|+|+|||||||+++.|++. +|++++++|+++++.. ....++.. +.. ..+ .++.+...+...+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~-~~~~~~~~----~~~-~~~~r~~~~~~~~~l~~~~~ 81 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH-FYTEYDTE----LDT-HIIEEKDEDRLLDFMEPIMV 81 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT-CSCC----------C-CCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhh-hhhhHHHH----hhh-cccCCCCHHHHHHHHHHHHh
Confidence 34668999999999999999999999 7999999999988741 11122221 111 111 23333444444443
Q ss_pred ccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 81 DLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 81 ~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
. +.++|+|..... .+.. ..++.+|||++|.+++.+|+..|
T Consensus 82 ~-~g~~vi~~~~~~-----~~~~--~~~~~vi~l~~~~e~~~~Rl~~R 121 (184)
T 1y63_A 82 S-RGNHVVDYHSSE-----LFPE--RWFHMVVVLHTSTEVLFERLTKR 121 (184)
T ss_dssp S-SSEEEEECSCCT-----TSCG--GGCSEEEEEECCHHHHHHHHHHT
T ss_pred c-cCCEEEeCchHh-----hhhh--ccCCEEEEEECCHHHHHHHHHhC
Confidence 3 557888864221 1111 12678999999999999999998
No 53
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.64 E-value=7e-16 Score=116.68 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=66.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHH-CCCCCChHHHHHHHHHHHhccCCce
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMN-KGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
++|+|+|+|||||||+++.|++.+++++++.|++++.... .+.. ..+. .|..........++. .+.. ...+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g--~~~~----~~~~~~g~~~~~~~~~~~~~-~l~~-~~~~ 76 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--QKVS----EIFEQKRENFFREQEQKMAD-FFSS-CEKA 76 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--SCHH----HHHHHHCHHHHHHHHHHHHH-HHTT-CCSE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC--CCHH----HHHHHcCHHHHHHHHHHHHH-HHHc-cCCE
Confidence 4799999999999999999999999999999888776421 1111 1111 121111111122222 2332 4556
Q ss_pred EEc-CCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 87 LLD-GFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 87 ild-g~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
|++ |.+.... .. +.. .+.+|||++|++++.+|+..|
T Consensus 77 vi~~g~~~~~~-~~-l~~----~~~~i~l~~~~e~~~~R~~~r 113 (175)
T 1via_A 77 CIATGGGFVNV-SN-LEK----AGFCIYLKADFEYLKKRLDKD 113 (175)
T ss_dssp EEECCTTGGGS-TT-GGG----GCEEEEEECCHHHHTTCCCGG
T ss_pred EEECCCCEehh-hH-Hhc----CCEEEEEeCCHHHHHHHHhcc
Confidence 665 5332211 11 322 368999999999999998776
No 54
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.64 E-value=5.6e-16 Score=124.71 Aligned_cols=161 Identities=20% Similarity=0.211 Sum_probs=96.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH---hCccee--ehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH---FNVKHI--ATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKD 81 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~---~~~~~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (228)
|+.|+|+|+|||||||+|+.|++. .|..++ +.|.+ +..+....+.+... + .......+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~-~~~l~~~~~~~e~~---~-------~~~~~~~i~~~l~- 71 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI-RESFPVWKEKYEEF---I-------KKSTYRLIDSALK- 71 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH-HTTSSSCCGGGHHH---H-------HHHHHHHHHHHHT-
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH-HHHHhhhhHHHHHH---H-------HHHHHHHHHHHhh-
Confidence 568999999999999999999998 688777 77544 43222111111110 0 0111223333333
Q ss_pred cCCceEEcCCCCCHHHHHHHH---hcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccc
Q psy6801 82 LKCNYLLDGFPRTYDQAMALF---KNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKL 158 (228)
Q Consensus 82 ~~~~~ildg~p~~~~~~~~l~---~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~ 158 (228)
...+|+|+.+........+. .....|+.+|||++|++++.+|+..|.
T Consensus 72 -~~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~----------------------------- 121 (260)
T 3a4m_A 72 -NYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG----------------------------- 121 (260)
T ss_dssp -TSEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT-----------------------------
T ss_pred -CCEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC-----------------------------
Confidence 46789998665544433333 223457899999999999999999882
Q ss_pred ccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCC--C-cchHHHHHHHHhhcC
Q psy6801 159 IQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNT--T-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~--~-e~v~~~i~~~l~~~~ 216 (228)
.....+.+.+....|.. ....|......++||++. + +++++.|...+...-
T Consensus 122 ---~~~~~~~l~~~~~~~e~----~~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~~ 175 (260)
T 3a4m_A 122 ---EKIPNEVIKKMYEKFDE----PGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIP 175 (260)
T ss_dssp ---CSSCHHHHHHHHHHCCC----TTSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSCC
T ss_pred ---CCCCHHHHHHHHHHhcC----ccccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCCC
Confidence 01123333333333321 111222123467889987 6 899999988887644
No 55
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.64 E-value=3.1e-14 Score=107.43 Aligned_cols=161 Identities=17% Similarity=0.153 Sum_probs=94.2
Q ss_pred CCcc-cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChH-------HHH
Q psy6801 1 MLNT-LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDD-------LMI 72 (228)
Q Consensus 1 m~~~-~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 72 (228)
|+.. +.+.+|+|+|++||||||+++.|+..+|..+++.|++.+.. .+.. ...|..+.+. .+.
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~ 70 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALN 70 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHH
Confidence 5554 55678999999999999999999999999999997763210 0000 0112111111 111
Q ss_pred HHHHHHHhccCCceEEcC-CCCCHHHHHHHHhcCCCCC-EEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCC
Q psy6801 73 DLVKNEVKDLKCNYLLDG-FPRTYDQAMALFKNHLSPN-CVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGI 150 (228)
Q Consensus 73 ~~~~~~l~~~~~~~ildg-~p~~~~~~~~l~~~~~~~~-~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~ 150 (228)
..+...+.. +..+|+|. ++ .......+... .++ .+|||++|++++.+|+..|...
T Consensus 71 ~~~~~~~~~-~~~~vi~~~~~-~~~~~~~l~~~--~~~~~vv~l~~~~e~~~~R~~~R~~~------------------- 127 (175)
T 1knq_A 71 DAAFAMQRT-NKVSLIVCSAL-KKHYRDLLREG--NPNLSFIYLKGDFDVIESRLKARKGH------------------- 127 (175)
T ss_dssp HHHHHHHHH-CSEEEEECCCC-SHHHHHHHHTT--CTTEEEEEEECCHHHHHHHHHTSTTC-------------------
T ss_pred HHHHHHHhc-CCcEEEEeCch-HHHHHHHHHhc--CCCEEEEEEECCHHHHHHHHHhccCC-------------------
Confidence 222222222 66788884 43 23333444443 245 6999999999999999998210
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHh
Q psy6801 151 DDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213 (228)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~ 213 (228)
......+...+..|.. + +|.. ...++||++.+ +++.++|.+.+.
T Consensus 128 ------------~~~~~~~~~~~~~~~~----~--~~~~-~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 128 ------------FFKTQMLVTQFETLQE----P--GADE-TDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp ------------CCCHHHHHHHHHHCCC----C--CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred ------------CCchHHHHHHHHhhhC----c--ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence 0112222222222110 0 1322 23678898888 999999998875
No 56
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.63 E-value=1.4e-14 Score=111.92 Aligned_cols=159 Identities=17% Similarity=0.205 Sum_probs=96.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHH-------HHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL-------MIDLVKNE 78 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 78 (228)
.+.+|+|+|++||||||+++.|+..+|..+++.+++..... ......|....+.. +...+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN----------IATMQRGIPLTDEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH----------HHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHH----------HHHHhcCCCCCCcccccHHHHHHHHHHHH
Confidence 35689999999999999999999999999999877632110 00111122222211 11222222
Q ss_pred HhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccc
Q psy6801 79 VKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKL 158 (228)
Q Consensus 79 l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~ 158 (228)
+.. +..+|+|...........+... ..+..+|||++|++++.+|+..|....
T Consensus 98 ~~~-g~~viid~~~~~~~~~~~l~~~-~~~~~vv~l~~~~e~l~~Rl~~R~~~~-------------------------- 149 (200)
T 4eun_A 98 ADA-GVSTIITCSALKRTYRDVLREG-PPSVDFLHLDGPAEVIKGRMSKREGHF-------------------------- 149 (200)
T ss_dssp HHT-TCCEEEEECCCCHHHHHHHTTS-SSCCEEEEEECCHHHHHHHHTTCSCCS--------------------------
T ss_pred Hhc-CCCEEEEchhhhHHHHHHHHHh-CCceEEEEEeCCHHHHHHHHHhcccCC--------------------------
Confidence 222 6678888643444444455444 345679999999999999999883210
Q ss_pred ccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 159 IQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
...+.+...+..+ ...|... ..++||++.+ +++.++|.+.|...
T Consensus 150 -----~~~~~l~~~~~~~-------~~~~~~~-~~~~Id~~~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 150 -----MPASLLQSQLATL-------EALEPDE-SGIVLDLRQPPEQLIERALTWLDIA 194 (200)
T ss_dssp -----SCGGGHHHHHHHC-------CCCCTTS-CEEEEETTSCHHHHHHHHHHHHCCC
T ss_pred -----CCHHHHHHHHHHh-------CCCCCCC-CeEEEECCCCHHHHHHHHHHHHHhc
Confidence 1111121111111 1122222 3678999888 99999999988753
No 57
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.62 E-value=1.6e-15 Score=113.91 Aligned_cols=107 Identities=18% Similarity=0.270 Sum_probs=67.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHH-CCCCCChHHHHHHHHHHHhccCC
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMN-KGLLVPDDLMIDLVKNEVKDLKC 84 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 84 (228)
.|..|+|+|+|||||||+++.|++++|++++++|+++++... .. +.+.+. .|...........+.. +.. ..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~l~~-~~~-~~ 77 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG--LS----VREIFEELGEDNFRMFEKNLIDE-LKT-LK 77 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SC----HHHHHHHTCHHHHHHHHHHHHHH-HHT-CS
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC--CC----HHHHHHHhCHHHHHHHHHHHHHH-HHh-cC
Confidence 356899999999999999999999999999999998876542 11 222222 1211111111222222 222 34
Q ss_pred ce-EEc-C--CCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 85 NY-LLD-G--FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 85 ~~-ild-g--~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.+ |+. | ++.. .. + -.++.+|||++|++++.+|+..|
T Consensus 78 ~~~Vi~~g~g~~~~-~~---l----~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 78 TPHVISTGGGIVMH-EN---L----KGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp SCCEEECCGGGGGC-GG---G----TTSEEEEEEECCHHHHHHHHCC-
T ss_pred CCEEEECCCCEech-hH---H----hcCCEEEEEECCHHHHHHHHhcc
Confidence 44 554 3 3333 11 2 23678999999999999999887
No 58
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.62 E-value=2e-14 Score=109.08 Aligned_cols=159 Identities=12% Similarity=0.133 Sum_probs=87.9
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCccee-ehhHHHHHHHhccChhhHHHHHHHHCCCCC----Ch--HHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHI-ATGDILRSHIAQNTTLGLKAKEYMNKGLLV----PD--DLMIDLVKN 77 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~ 77 (228)
|.|+.|+|+|+|||||||+|+.|++.++.+++ +.+. .+..+.+.+..|... .. ..+...+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~-----------~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 71 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE-----------MGQALRKLTPGFSGDPQEHPMWIPLMLDALQY 71 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEECCTHH-----------HHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhh-----------hHHHHHHhCccccchhhhhHHHHHHHHHHHHH
Confidence 56778999999999999999999999999888 4311 122222222212110 00 223344444
Q ss_pred HHhccCCceEEcCCCCCHHHH----HHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcc
Q psy6801 78 EVKDLKCNYLLDGFPRTYDQA----MALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDI 153 (228)
Q Consensus 78 ~l~~~~~~~ildg~p~~~~~~----~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~ 153 (228)
.+...+..+|+|+........ ..+...+..+ ..|||++|++++.+|+..|..
T Consensus 72 ~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~-~~i~l~~~~e~~~~R~~~R~~----------------------- 127 (183)
T 2vli_A 72 ASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSV-HHFTLIAPLNVVLERLRRDGQ----------------------- 127 (183)
T ss_dssp HHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCC-EEEEEECCHHHHHHHHHTC-------------------------
T ss_pred HHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCce-EEEEEeCCHHHHHHHHHhccc-----------------------
Confidence 443214557778644333222 2333332322 569999999999999998821
Q ss_pred cccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCC-CC-cchHHHHHHHHhhcCC
Q psy6801 154 TGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGN-TT-DEIWPRIYEHLNIRIP 217 (228)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~-~~-e~v~~~i~~~l~~~~~ 217 (228)
++ ...+. +..+.....++ . + . + +||++ .+ +++.++|.+.+...+.
T Consensus 128 -------r~-~~~~~----~~~~~~~~~~~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~~~~~ 174 (183)
T 2vli_A 128 -------PQ-VNVGT----VEDRLNELRGE-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVGLTLA 174 (183)
T ss_dssp ----------CCHHH----HHHHHHHHTSG-G-G---C-S-EEECTTCCHHHHHHHHHHHHTCCCC
T ss_pred -------cc-hhHHH----HHHHHHhhccc-c-c---c-e-EeeCCCCCHHHHHHHHHHHHHHhcC
Confidence 11 11222 23333322222 1 2 2 3 78887 67 9999999999987764
No 59
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.61 E-value=4.7e-15 Score=114.75 Aligned_cols=162 Identities=15% Similarity=0.282 Sum_probs=96.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCC-----CCChHHH-----------
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL-----LVPDDLM----------- 71 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------- 71 (228)
++|+|+|++||||||+++.|++ +|++++++|++++............+...+.... .+....+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999999 9999999999887654433222222222221100 0111000
Q ss_pred ---HHH--------HHHHHhcc-C-CceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCccc
Q psy6801 72 ---IDL--------VKNEVKDL-K-CNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVY 138 (228)
Q Consensus 72 ---~~~--------~~~~l~~~-~-~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~ 138 (228)
..+ +...+... + ..+|+|+.-.... .+.. .++.+|||++|++++.+|+..| |
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~---~~~~---~~~~~i~l~~~~e~~~~Rl~~R------~--- 145 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEK---GTYK---NYDKLIVVYAPYEVCKERAIKR------G--- 145 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTT---TCGG---GSSEEEEECCCHHHHHHHHHHT------C---
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccC---Cchh---hCCEEEEEECCHHHHHHHHHHc------C---
Confidence 111 11112212 3 5688887311100 1111 2789999999999999999887 1
Q ss_pred ccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhcC
Q psy6801 139 NLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216 (228)
Q Consensus 139 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~~ 216 (228)
.+.+.+.+++..+ . +...++...+ ++||++.+ +++.++|.+.+....
T Consensus 146 -------------------------~~~~~~~~~~~~~---~-~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 146 -------------------------MSEEDFERRWKKQ---M-PIEEKVKYAD--YVIDNSGSIEETYKQVKKVYEELT 193 (204)
T ss_dssp -------------------------CCHHHHHHHHTTS---C-CHHHHGGGCS--EECCCSSCHHHHHHHHHHHHHTTC
T ss_pred -------------------------CCHHHHHHHHHhC---C-ChhHHHhcCC--EEEECCCCHHHHHHHHHHHHHHHh
Confidence 1123344444332 1 1122333333 46888888 999999999987655
No 60
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.60 E-value=1.3e-14 Score=114.03 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=36.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHI 46 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~ 46 (228)
+++|+|+|++||||||+++.|++.+|+++++.|++++...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~ 44 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA 44 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhh
Confidence 4589999999999999999999999999999999988653
No 61
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.58 E-value=5e-14 Score=108.60 Aligned_cols=166 Identities=19% Similarity=0.139 Sum_probs=89.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehh----HHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc-
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATG----DILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL- 82 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 82 (228)
+.|+|+|++||||||+++.|++.++..++.-. .+++..+........ ... .......+. .+...
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~~r~~-~~~~~~ 69 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVF----KMQ------IYMLTARSK-QLKQAK 69 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHH----HHH------HHHHHHHHH-HHC---
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccch----hHH------HHHHHHHHH-HHHHhh
Confidence 36999999999999999999999998766421 111111100000000 000 000011111 12111
Q ss_pred -CCceEEcCCCCCHHHHH------------------H----HHhc-------CCCCCEEEEEEeCHHHHHHHHhcCccCC
Q psy6801 83 -KCNYLLDGFPRTYDQAM------------------A----LFKN-------HLSPNCVMHINVPKEVIIDRLSKRWIHP 132 (228)
Q Consensus 83 -~~~~ildg~p~~~~~~~------------------~----l~~~-------~~~~~~vi~l~~~~e~~~~R~~~R~~~~ 132 (228)
...+|+|+++.+-.... . +... ...|+.+|||++|++++.+|+..|
T Consensus 70 ~~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R---- 145 (205)
T 2jaq_A 70 NLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKR---- 145 (205)
T ss_dssp ---CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHH----
T ss_pred ccCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHc----
Confidence 33488898765411110 0 1011 146899999999999999999877
Q ss_pred CCCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHH
Q psy6801 133 ASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEH 211 (228)
Q Consensus 133 ~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~ 211 (228)
|+... .. .. ....+++..+ +....+.|......++||++.+ ++++++|.+.
T Consensus 146 --~r~~~--------------------~~--~~-~~~~~~l~~~---~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~ 197 (205)
T 2jaq_A 146 --GRSEE--------------------LL--IG-EEYWETLNKN---YEEFYKQNVYDFPFFVVDAELDVKTQIELIMNK 197 (205)
T ss_dssp --TCHHH--------------------HH--SC-HHHHHHHHHH---HHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHH
T ss_pred --CChhh--------------------hc--Cc-HHHHHHHHHH---HHHHHHHccccCcEEEEECCCCHHHHHHHHHHH
Confidence 11000 00 00 1222333333 2233445542334788999989 9999999998
Q ss_pred HhhcC
Q psy6801 212 LNIRI 216 (228)
Q Consensus 212 l~~~~ 216 (228)
+....
T Consensus 198 l~~~~ 202 (205)
T 2jaq_A 198 LNSIK 202 (205)
T ss_dssp HHHC-
T ss_pred HHHhc
Confidence 87543
No 62
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.58 E-value=1.8e-14 Score=114.96 Aligned_cols=175 Identities=15% Similarity=0.162 Sum_probs=99.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHC-CCCCChHHHHHHHHHHHhccCC
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK-GLLVPDDLMIDLVKNEVKDLKC 84 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 84 (228)
.+..|+|+|++||||||+++.|++.+++.+++.|++++.... +..+. ..+.. |...........+...... ..
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~i~----~i~~~~ge~~fr~~e~~~l~~l~~~-~~ 120 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTSVA----EIFEHFGESVFREKETEALKKLSLM-YH 120 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSCHH----HHHHHHCHHHHHHHHHHHHHHHHHH-CS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-CccHH----HHHHHhCcHHHHHHHHHHHHHHHhh-cC
Confidence 356899999999999999999999999999999888876541 22222 22221 2111111122222222211 13
Q ss_pred ceEE-c--CCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCccccccccc-
Q psy6801 85 NYLL-D--GFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQ- 160 (228)
Q Consensus 85 ~~il-d--g~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~- 160 (228)
++|+ + |.+........+. .+.+|||++|.+++.+|+.++... .+++..
T Consensus 121 ~~Via~GgG~v~~~~~~~~l~-----~~~vV~L~a~~e~l~~Rl~~~~~~-----------------------~Rpl~~~ 172 (250)
T 3nwj_A 121 QVVVSTGGGAVIRPINWKYMH-----KGISIWLDVPLEALAHRIAAVGTG-----------------------SRPLLHD 172 (250)
T ss_dssp SEEEECCGGGGGSHHHHHHHT-----TSEEEEEECCHHHHHHHHHC----------------------------------
T ss_pred CcEEecCCCeecCHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCCC-----------------------CCCcccC
Confidence 4555 4 3555554554443 268999999999999999874100 000110
Q ss_pred -CCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEE----------eCCC-C-cchHHHHHHHHhhcCC
Q psy6801 161 -RDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTF----------TGNT-T-DEIWPRIYEHLNIRIP 217 (228)
Q Consensus 161 -~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~i----------d~~~-~-e~v~~~i~~~l~~~~~ 217 (228)
+..+..+...+++........ ..|...+.++.+ |++. + +++++.|.+.+..++.
T Consensus 173 ~~~~d~~~~~~~~l~~l~~eR~---~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~ 239 (250)
T 3nwj_A 173 DESGDTYTAALNRLSTIWDARG---EAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLE 239 (250)
T ss_dssp -----CHHHHHHHHHHHHHHHH---HHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred CCcccchhhHHHHHHHHHHHHH---HHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 111222223344444444433 346555555533 4443 5 9999999999988763
No 63
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.57 E-value=2.7e-14 Score=116.08 Aligned_cols=164 Identities=13% Similarity=0.130 Sum_probs=97.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCC-----CCCChH------------
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKG-----LLVPDD------------ 69 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------ 69 (228)
|++|+|+|++||||||+|+.|+ .+|++++++|++.+....++.+....+...+... ..+...
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~ 153 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQ 153 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHH
Confidence 5689999999999999999999 6899999999998876554443332222222110 001110
Q ss_pred ------H----HHHHHHHHHhcc----CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCC
Q psy6801 70 ------L----MIDLVKNEVKDL----KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASG 135 (228)
Q Consensus 70 ------~----~~~~~~~~l~~~----~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g 135 (228)
+ +...+.+.+... ...+|+||...... .+.. .+|.+|||++|++++.+|+..|. |
T Consensus 154 ~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~~---~~d~vI~l~a~~ev~~~Rl~~R~-----g 222 (281)
T 2f6r_A 154 MKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQS---MVHEVWTVVIPETEAVRRIVERD-----G 222 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGGG---GCSEEEEEECCHHHHHHHHHHHH-----C
T ss_pred HHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chHH---hCCEEEEEcCCHHHHHHHHHHcC-----C
Confidence 0 001111222111 34688898421110 1111 26899999999999999999882 1
Q ss_pred cccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 136 RVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
.+.+.+.+++... . +..+++...+ ++||++.+ +++.++|.+.+..
T Consensus 223 ----------------------------~s~e~~~~ri~~q---~-~~~~~~~~AD--~vIdn~~s~eel~~~I~~~l~~ 268 (281)
T 2f6r_A 223 ----------------------------LSEAAAQSRLQSQ---M-SGQQLVEQSN--VVLSTLWESHVTQSQVEKAWNL 268 (281)
T ss_dssp ----------------------------CCHHHHHHHHHTS---C-CHHHHHHTCS--EEEECSSCHHHHHHHHHHHHHH
T ss_pred ----------------------------CCHHHHHHHHHHc---C-ChHhhHhhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 1234444444333 1 1222223232 46788878 9999999988875
Q ss_pred cC
Q psy6801 215 RI 216 (228)
Q Consensus 215 ~~ 216 (228)
.+
T Consensus 269 l~ 270 (281)
T 2f6r_A 269 LQ 270 (281)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 64
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.57 E-value=3.7e-14 Score=109.88 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=105.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCC-----CCCh-------------
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL-----LVPD------------- 68 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------------- 68 (228)
|--|.++|.+||||||+++.|++ +|++++++|.+.++.+.++.+.-..+...+.... .+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~ 87 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA 87 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence 44699999999999999999988 9999999999999888777665555555553221 1222
Q ss_pred -----HHHHHHHHHHHh----cc-CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCccc
Q psy6801 69 -----DLMIDLVKNEVK----DL-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVY 138 (228)
Q Consensus 69 -----~~~~~~~~~~l~----~~-~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~ 138 (228)
.++...+...+. .. ...+|+|. |--+.. ..+... +|.+|++++|+++..+|+.+|.
T Consensus 88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~-~~~~~~---~D~vi~V~ap~e~r~~Rl~~Rd--------- 153 (210)
T 4i1u_A 88 RRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVES-RNWKAR---CDRVLVVDCPVDTQIARVMQRN--------- 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTC-HHHHHH---CSEEEEEECCHHHHHHHHHHHH---------
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-eccccc-CCcccc---CCeEEEEECCHHHHHHHHHhcC---------
Confidence 112222222222 22 33466776 221110 112222 7899999999999999999982
Q ss_pred ccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCC-CC-cchHHHHHHHHhhc
Q psy6801 139 NLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGN-TT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 139 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~-~~-e~v~~~i~~~l~~~ 215 (228)
+.+.+.+.+++.... +..+.....+ ++|+++ .+ +++.++|...+...
T Consensus 154 ------------------------g~s~eea~~ri~~Q~----~~eek~~~AD--~VIdN~~gsle~l~~qV~~l~~~~ 202 (210)
T 4i1u_A 154 ------------------------GFTREQVEAIIARQA----TREARLAAAD--DVIVNDAATPDALAVQVDALHQRY 202 (210)
T ss_dssp ------------------------CCCHHHHHHHHHHSC----CHHHHHHTCS--EEEECSSCCHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCHHHHHHHHHHcC----ChHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHHH
Confidence 234566666665432 2233333332 467888 78 99999998877654
No 65
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.57 E-value=1.8e-14 Score=111.13 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=94.3
Q ss_pred CCcc-cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHH----CCCCCChHHHH---
Q psy6801 1 MLNT-LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMN----KGLLVPDDLMI--- 72 (228)
Q Consensus 1 m~~~-~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--- 72 (228)
|.++ +.+++|+|.|++||||||+++.|++. |+++++.|++++... .+.+ ..+...+. +| .+....+.
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g-~i~~~~l~~~~ 75 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGG-RLDRRALARLV 75 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETT-EECHHHHHHHH
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCC-CcCHHHHHHHH
Confidence 5554 45778999999999999999999998 999999999887765 2222 11111111 11 11111111
Q ss_pred -----------HHHH-----HHHh---cc-CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCC
Q psy6801 73 -----------DLVK-----NEVK---DL-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHP 132 (228)
Q Consensus 73 -----------~~~~-----~~l~---~~-~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~ 132 (228)
.+.. ..+. .. +..+|+|+ |.... ..+.. .++.+|||++|++++.+|+..|.
T Consensus 76 ~~~~~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~--~~~~~---~~d~~i~l~~~~e~~~~R~~~R~--- 146 (203)
T 1uf9_A 76 FSDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFE--KGWEG---RLHGTLLVAAPLEERVRRVMARS--- 146 (203)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTT--TTCGG---GSSEEEEECCCHHHHHHHHHTTT---
T ss_pred hCCHHHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceec--cCchh---hCCEEEEEECCHHHHHHHHHHcC---
Confidence 1111 1111 11 34566776 21111 01111 26899999999999999999871
Q ss_pred CCCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHH
Q psy6801 133 ASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEH 211 (228)
Q Consensus 133 ~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~ 211 (228)
....+.+..++... .. ...++...+ ++||++.+ +++.++|.+.
T Consensus 147 ------------------------------~~~~~~~~~~i~~~---~~-~~~~~~~ad--~vId~~~~~~~~~~~i~~~ 190 (203)
T 1uf9_A 147 ------------------------------GLSREEVLARERAQ---MP-EEEKRKRAT--WVLENTGSLEDLERALKAV 190 (203)
T ss_dssp ------------------------------CCTTHHHHHHHTTS---CC-HHHHHHHCS--EEECCSSHHHHHHHHHHHH
T ss_pred ------------------------------CCCHHHHHHHHHHC---CC-hhHHHHhCC--EEEECCCCHHHHHHHHHHH
Confidence 01112333333221 11 111122233 36888888 9999999998
Q ss_pred HhhcCC
Q psy6801 212 LNIRIP 217 (228)
Q Consensus 212 l~~~~~ 217 (228)
+...+.
T Consensus 191 ~~~~~~ 196 (203)
T 1uf9_A 191 LAELTG 196 (203)
T ss_dssp HHSCCC
T ss_pred HHHHHh
Confidence 876553
No 66
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.55 E-value=6.4e-14 Score=105.41 Aligned_cols=111 Identities=16% Similarity=0.241 Sum_probs=65.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCce
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
+.+|+|+|++||||||+++.|++.++.++++.|++++.... ...+..... .|..........++. .+.. ...+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~---~g~~~~~~~~~~~l~-~l~~-~~~~ 76 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDL---EGEEGFRDREEKVIN-ELTE-KQGI 76 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHH-HHHT-SSSE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHH---HhHHHHHHHHHHHHH-HHHh-CCCe
Confidence 46799999999999999999999999999999888765431 222221110 010000000111222 2222 4566
Q ss_pred EEc---CCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 87 LLD---GFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 87 ild---g~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
++. +.+........+.. .++++||+++++++.+|+..|
T Consensus 77 v~~~~~~~~~~~~~~~~l~~----~~~~i~l~~~~~~l~~R~~~r 117 (173)
T 1kag_A 77 VLATGGGSVKSRETRNRLSA----RGVVVYLETTIEKQLARTQRD 117 (173)
T ss_dssp EEECCTTGGGSHHHHHHHHH----HSEEEECCCCHHHHHSCC---
T ss_pred EEECCCeEEecHHHHHHHHh----CCEEEEEeCCHHHHHHHHhCC
Confidence 663 33333333344443 367999999999999999887
No 67
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.54 E-value=1.5e-14 Score=118.49 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=76.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-CcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHH---hcc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEV---KDL 82 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~ 82 (228)
|+.|+|+|+|||||||+++.|++++ ++.+++.| .++..+....+ +.. ..+...+.......+...+...+ ..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 77 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDS- 77 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTT-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccC-
Confidence 4679999999999999999999985 89999997 55555432111 100 00000000001122334445555 33
Q ss_pred CCceEEcCCCCCHHHHHHHHh---cCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 83 KCNYLLDGFPRTYDQAMALFK---NHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 83 ~~~~ildg~p~~~~~~~~l~~---~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+.++|+|+++....+...+.. ....+..+|||++|.+++.+|+..|
T Consensus 78 g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R 126 (301)
T 1ltq_A 78 VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR 126 (301)
T ss_dssp CCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc
Confidence 788999998877655544432 2123457999999999999999998
No 68
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.54 E-value=3e-15 Score=116.20 Aligned_cols=167 Identities=15% Similarity=0.134 Sum_probs=97.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh-CcceeehhHHHHHHHhccChhhHHHHHHHHCCC---CCChHHHHHHHHHHHhc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF-NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL---LVPDDLMIDLVKNEVKD 81 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 81 (228)
.+.+|+|.|++||||||+++.|++.+ ++.+++.|++++..-. ...+. ..+.... .+....+...+...+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~l~~~i~~~l~~ 94 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESE--IETDK---NGFLQYDVLEALNMEKMMSAISCWMES 94 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGG--SCBCT---TSCBCCSSGGGBCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhH--hhccc---cCCChhHHHHHhHHHHHHHHHHHHHhC
Confidence 35689999999999999999999998 8999999887642210 00000 0000000 01112232333322221
Q ss_pred -------------c-CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCC
Q psy6801 82 -------------L-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKK 147 (228)
Q Consensus 82 -------------~-~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~ 147 (228)
. ...+|+||+.... ...+. -.+|.+||++++++++.+|+..|...
T Consensus 95 ~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~~~~---~~~d~~i~l~~~~~~~~~R~~~R~~~---------------- 153 (207)
T 2qt1_A 95 ARHSVVSTDQESAEEIPILIIEGFLLFN--YKPLD---TIWNRSYFLTIPYEECKRRRSTRVYQ---------------- 153 (207)
T ss_dssp HTTSSCCC-----CCCCEEEEECTTCTT--CGGGT---TTCSEEEEEECCHHHHHHHHHHSCCS----------------
T ss_pred CCCCCcCCCeeecCCCCEEEEeehHHcC--cHHHH---HhcCeeEEEECCHHHHHHHHHHcCCC----------------
Confidence 0 3568889954321 11122 34789999999999999999877211
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhh-CCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 148 PGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDN-REVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
..+....+.. .+...+....+.+.. .+.++.||++.+ ++++++|.+.+...
T Consensus 154 --------------~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~~ 206 (207)
T 2qt1_A 154 --------------PPDSPGYFDG---HVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQE 206 (207)
T ss_dssp --------------SCCCTTHHHH---THHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTTT
T ss_pred --------------ccchHHHHHH---HHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHhh
Confidence 0011111211 122222233445554 356788999999 99999999988754
No 69
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.53 E-value=4.2e-13 Score=103.87 Aligned_cols=157 Identities=17% Similarity=0.260 Sum_probs=94.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc-c----------------------eeehhHHHHHHHhccChhhHHHHHHHHC
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV-K----------------------HIATGDILRSHIAQNTTLGLKAKEYMNK 62 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~-~----------------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 62 (228)
.++.|+|+|||||||||+++.|++.++. . +++.+.+ .. ....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~-~~--------------~~~~ 75 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDF-ER--------------KLKE 75 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHH-HH--------------HHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHH-HH--------------HHHc
Confidence 4568999999999999999999998842 1 2222222 11 1222
Q ss_pred CCCCChH--------HHHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCC--CCEEEEEE-eCHHHHHHHHhcCccC
Q psy6801 63 GLLVPDD--------LMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLS--PNCVMHIN-VPKEVIIDRLSKRWIH 131 (228)
Q Consensus 63 ~~~~~~~--------~~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~--~~~vi~l~-~~~e~~~~R~~~R~~~ 131 (228)
+..+... .....+...+.. +..+|+|+.+.... .+... .. ...+|||. +|.+++.+|+..|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~~l~~-g~~vi~d~~~~~~~---~l~~~-~~~~~~~~i~l~~~s~e~l~~Rl~~R~-- 148 (204)
T 2qor_A 76 GQFLEFDKYANNFYGTLKSEYDLAVGE-GKICLFEMNINGVK---QLKES-KHIQDGIYIFVKPPSIDILLGRLKNRN-- 148 (204)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHT-TCEEEEECCHHHHH---HHHHC-SSCSCCEEEEEECSCHHHHHHHHHTCT--
T ss_pred CCCEEeHHhCCCeecCCHHHHHHHHHc-CCeEEEEECHHHHH---HHHHh-cCCCCeEEEEEcCCCHHHHHHHHHHcC--
Confidence 2111100 001233444444 88899998554333 33333 22 23789998 99999999998881
Q ss_pred CCCCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHH
Q psy6801 132 PASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYE 210 (228)
Q Consensus 132 ~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~ 210 (228)
.+.++.+.+++..++...... |......+ |+++ + ++++++|.+
T Consensus 149 -------------------------------~~~~~~i~~rl~~~~~~~~~~---~~~~~d~v-i~n~-~~e~~~~~i~~ 192 (204)
T 2qor_A 149 -------------------------------TEKPEEINKRMQELTREMDEA---DKVGFNYF-IVND-DLARTYAELRE 192 (204)
T ss_dssp -------------------------------TSCHHHHHHHHHHHHHHHHHH---HHHTCSEE-EECS-SHHHHHHHHHH
T ss_pred -------------------------------CCCHHHHHHHHHHHHHHHHHh---hhccCcEE-EECc-CHHHHHHHHHH
Confidence 134567777777665432211 22222233 3444 7 999999999
Q ss_pred HHhhcCCCCC
Q psy6801 211 HLNIRIPPLK 220 (228)
Q Consensus 211 ~l~~~~~~~~ 220 (228)
.|...++...
T Consensus 193 ~i~~~~~~~~ 202 (204)
T 2qor_A 193 YLLGSYPQLR 202 (204)
T ss_dssp HHHHHCTTCC
T ss_pred HHHHHhhccC
Confidence 9998876553
No 70
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.53 E-value=3.6e-13 Score=104.10 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=35.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHH
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHI 46 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~ 46 (228)
+|+|.|++||||||+++.|++.+|+++++.|++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~ 41 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAA 41 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhh
Confidence 79999999999999999999999999999998887653
No 71
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.52 E-value=6.5e-15 Score=117.86 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=95.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcc----------eeehhHHHHHHHhccChhhHHHHHHHHCCCC-------CCh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVK----------HIATGDILRSHIAQNTTLGLKAKEYMNKGLL-------VPD 68 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 68 (228)
.|++|+|.|++||||||+|+.|++.++++ ++++|++++... .+. +. ....|.. ...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~-----~~~-~~-~~~~g~~~f~~~~~~d~ 93 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT-----SEQ-KA-KALKGQFNFDHPDAFDN 93 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC-----HHH-HH-HHHTTCSCTTSGGGBCH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC-----hhh-hh-hhccCCCCCCCcchhhH
Confidence 46789999999999999999999999987 799998875210 011 11 1112211 111
Q ss_pred HHHHHHHHHHHh----------------------cc-CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHH
Q psy6801 69 DLMIDLVKNEVK----------------------DL-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125 (228)
Q Consensus 69 ~~~~~~~~~~l~----------------------~~-~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~ 125 (228)
..+...+..... .. ...+|+||...... ..+... +|.+|||++|++++.+|+
T Consensus 94 ~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~--~~~~~~---~d~vi~l~~~~e~~~~R~ 168 (252)
T 1uj2_A 94 ELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVRDL---FQMKLFVDTDADTRLSRR 168 (252)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHHHH---CSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC--HHHHHh---cCeeEEEeCCHHHHHHHH
Confidence 222333333221 00 35688999543211 122222 589999999999999999
Q ss_pred hcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHh-cHHHHHHHhhh-CCcEE--EEeCCCC
Q psy6801 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQ-TIKPLLDYYDN-REVLD--TFTGNTT 201 (228)
Q Consensus 126 ~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~~~~~-~~~~i--~id~~~~ 201 (228)
..|... .+ +...+.+.+++..... ........+.. .+.++ .||++.+
T Consensus 169 ~~R~~~----------------------------~r-g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s 219 (252)
T 1uj2_A 169 VLRDIS----------------------------ER-GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVA 219 (252)
T ss_dssp HHHHHH----------------------------HS-CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHH
T ss_pred HHHHHh----------------------------hh-CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhH
Confidence 887210 00 1234444444332110 11111111222 33333 3488667
Q ss_pred -cchHHHHHHHHhhcCCC
Q psy6801 202 -DEIWPRIYEHLNIRIPP 218 (228)
Q Consensus 202 -e~v~~~i~~~l~~~~~~ 218 (228)
++++++|.+.+...+..
T Consensus 220 ~e~v~~~I~~~l~~~~~~ 237 (252)
T 1uj2_A 220 INLIVQHIQDILNGGPSK 237 (252)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHccchhh
Confidence 99999999999876643
No 72
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.48 E-value=1.2e-13 Score=107.85 Aligned_cols=41 Identities=22% Similarity=0.441 Sum_probs=36.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~ 45 (228)
|.|++|+|+|++||||||+++.|++.+|+++++.|++++..
T Consensus 1 m~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 1 MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp --CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 35678999999999999999999999999999999998763
No 73
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.48 E-value=2.4e-12 Score=99.54 Aligned_cols=115 Identities=12% Similarity=0.170 Sum_probs=65.3
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhh-HHHHHHHHCCC--------------CCCh
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLG-LKAKEYMNKGL--------------LVPD 68 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~ 68 (228)
.|..++|+|.|++||||||+++.||+++|+++++ +++++... ....+. ..+...-.... ...+
T Consensus 3 ~m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a-~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T 3fdi_A 3 AMKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVA-KDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQ 80 (201)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTT-CC---------------------------------C
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHH-HhcCCCHHHHHHHhhhchhHHHHHhccccccccccH
Confidence 3556689999999999999999999999999999 78876521 111111 00000000000 0001
Q ss_pred ---HHHHHHHHHHHh--ccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 69 ---DLMIDLVKNEVK--DLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 69 ---~~~~~~~~~~l~--~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.....++.+ +. . ..++|++|...+. .+.. ....++|||++|++++.+|+..+
T Consensus 81 ~~~~~~~~~i~~-la~~~-~~~~Vi~Gr~g~~----vl~~--~~~~~~V~L~A~~e~r~~R~~~~ 137 (201)
T 3fdi_A 81 DIAIRQFNFIRK-KANEE-KESFVIVGRCAEE----ILSD--NPNMISAFILGDKDTKTKRVMER 137 (201)
T ss_dssp HHHHHHHHHHHH-HHHTS-CCCEEEESTTHHH----HTTT--CTTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhhc-CCCEEEEECCcch----hcCC--CCCeEEEEEECCHHHHHHHHHHH
Confidence 112223222 44 3 5678888742110 1111 11247999999999999999876
No 74
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.48 E-value=1.4e-12 Score=104.33 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=35.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~ 45 (228)
+.+|+|.|++||||||+++.|++++|+.+++.|.+++..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~ 65 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVL 65 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence 468999999999999999999999999999999988653
No 75
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.45 E-value=2.9e-12 Score=100.50 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=34.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHI 46 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~ 46 (228)
+++|+|.|++||||||+++.|++++|+++++ +++++...
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a 52 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLAS 52 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHH
Confidence 4589999999999999999999999999999 57766543
No 76
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.45 E-value=1.1e-12 Score=103.78 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=37.3
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~ 45 (228)
..+.+|+|+|++||||||+++.|++.+|+++++.|++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 34668999999999999999999999999999999998764
No 77
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.45 E-value=9.8e-13 Score=99.31 Aligned_cols=116 Identities=10% Similarity=0.088 Sum_probs=64.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCccee--ehhHHHHHHHhccCh---hhHHHHHHHHCCCC-CCh---HHH---HH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHI--ATGDILRSHIAQNTT---LGLKAKEYMNKGLL-VPD---DLM---ID 73 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i--~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~---~~~---~~ 73 (228)
+++.|+|+|+|||||||+++.|++.++..++ +.|++... ...... .+..+ ...+.. ... ... ..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 77 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA-MPLKMQSAEGGIEF---DADGGVSIGPEFRALEGAWAE 77 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH-SCGGGGTSTTSEEE---CTTSCEEECHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh-cchhhccchhhccc---cCCCccccchhHHHHHHHHHH
Confidence 4568999999999999999999999987665 47655433 221100 00000 000000 001 111 11
Q ss_pred HHHHHHhccCCceEEcCCC-CCH---HHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 74 LVKNEVKDLKCNYLLDGFP-RTY---DQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 74 ~~~~~l~~~~~~~ildg~p-~~~---~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.+...+.. +..+|+|+.. ... .+..... ...+..+|||++|.+++.+|+..|
T Consensus 78 ~~~~~~~~-g~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~v~l~~~~e~l~~R~~~r 133 (178)
T 1qhx_A 78 GVVAMARA-GARIIIDDVFLGGAAAQERWRSFV--GDLDVLWVGVRCDGAVAEGRETAR 133 (178)
T ss_dssp HHHHHHHT-TCEEEEEECCTTTHHHHHHHHHHH--TTCCEEEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHhc-CCeEEEEeccccChHHHHHHHHHh--cCCcEEEEEEECCHHHHHHHHHhh
Confidence 12222222 5678898843 221 1222221 112336889999999999999988
No 78
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.45 E-value=2e-12 Score=101.90 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=36.5
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~ 45 (228)
+.+++|+|.||+||||||+++.|++.+++.+++.|.+++..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 45678999999999999999999999999999999987764
No 79
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.44 E-value=2.2e-13 Score=105.98 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=63.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC------cceeehhHHHHHHHhccChhhHH-HHHHHHCCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN------VKHIATGDILRSHIAQNTTLGLK-AKEYMNKGLLVPDDLMIDLVKNE 78 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~------~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
.++.|+|+|++||||||+++.|++.++ ..+++.| .++..+.....+... -...+ ..+...+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d-~~r~~l~~~~~~~~~~r~~~~--------~~~~~~~~~~ 94 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD-NIRFGLNKDLGFSEADRNENI--------RRIAEVAKLF 94 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH-HHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh-HHhhhhccccCCCHHHHHHHH--------HHHHHHHHHH
Confidence 456899999999999999999999886 6677754 344322211111000 00000 0011122233
Q ss_pred HhccCCceEEcCCCCC----HHHHHHHHh------cCCCCCEEEEEEeCHHHHHHHH
Q psy6801 79 VKDLKCNYLLDGFPRT----YDQAMALFK------NHLSPNCVMHINVPKEVIIDRL 125 (228)
Q Consensus 79 l~~~~~~~ildg~p~~----~~~~~~l~~------~~~~~~~vi~l~~~~e~~~~R~ 125 (228)
+.. +..+|+| |... ...+..+.. ....|+.+|||++|++++.+|+
T Consensus 95 l~~-g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 95 ADS-NSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHT-TCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHC-CCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 333 6667778 4432 223333333 1125789999999999999985
No 80
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.42 E-value=9.4e-13 Score=100.32 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=62.6
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHH--HHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDL--VKN 77 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 77 (228)
+.+..|+|+|++||||||+++.|++.++ +.+++.|. ++..+.....+...-. ...+..+ +..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~r----------~~~~~~~~~~~~ 79 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGAGFTREER----------LRHLKRIAWIAR 79 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTCCCCHHHH----------HHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhccCCChhhH----------HHHHHHHHHHHH
Confidence 4567899999999999999999999985 34566644 4433221111100000 0011111 111
Q ss_pred HHhccCCceEEcCCCCCHH---HHHHHHhcCCCCCEEEEEEeCHHHHHHHHhc
Q psy6801 78 EVKDLKCNYLLDGFPRTYD---QAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127 (228)
Q Consensus 78 ~l~~~~~~~ildg~p~~~~---~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~ 127 (228)
.+...+..+|+|++..... ....+......|+.+|||++|++++.+|+..
T Consensus 80 ~~~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 80 LLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp HHHTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred HHHhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence 1222144456677543322 2222222223578999999999999999643
No 81
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.42 E-value=2e-13 Score=109.84 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=27.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh-Cccee
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF-NVKHI 36 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~-~~~~i 36 (228)
.++.|+|+|++||||||+++.|++.+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 46789999999999999999999998 55555
No 82
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.40 E-value=2.5e-12 Score=104.79 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=71.1
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHh--CcceeehhHHHHHHHhccChhhHHHHHHHHCCC-----CCChHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHF--NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL-----LVPDDLMIDLVKN 77 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 77 (228)
+.|..|+|+|||||||||+++.|++.+ +..+|+.|.+ +..... ....... +.... ..........+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~-R~~~~~---~~~~~~~-~~~~a~~~~~~~~~~~~~~~v~~ 105 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHPN---FDELVKL-YEKDVVKHVTPYSNRMTEAIISR 105 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH-HTTSTT---HHHHHHH-HGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh-HHhchh---hHHHHHH-ccchhhhhhhHHHHHHHHHHHHH
Confidence 456789999999999999999999999 7788998544 432211 1111111 10000 0001112233344
Q ss_pred HHhccCCceEEcCCCCCHHHHHH----HHhcCCCCCEEEEEEeCHHHH----HHHHhcCc
Q psy6801 78 EVKDLKCNYLLDGFPRTYDQAMA----LFKNHLSPNCVMHINVPKEVI----IDRLSKRW 129 (228)
Q Consensus 78 ~l~~~~~~~ildg~p~~~~~~~~----l~~~~~~~~~vi~l~~~~e~~----~~R~~~R~ 129 (228)
.+.. +..+|+|+......+... +... ..+..+++|.+|++++ .+|+..|.
T Consensus 106 ~l~~-g~~vIld~~~~~~~~~~~~~~~~~~~-g~~~~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 106 LSDQ-GYNLVIEGTGRTTDVPIQTATMLQAK-GYETKMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp HHHH-TCCEEECCCCCCSHHHHHHHHHHHTT-TCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred HHhc-CCeEEEECCCCCHHHHHHHHHHHHhC-CCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 4444 888999997666443322 2222 2233479999999999 88887663
No 83
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.39 E-value=2.5e-12 Score=98.64 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=38.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQ 48 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~ 48 (228)
..+|.|+|++||||||+++.|++.+|++++++|++.++...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE 53 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence 458999999999999999999999999999999998887654
No 84
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.28 E-value=2.2e-11 Score=108.30 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=66.0
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHh---Ccceeehh-HHHHHHHhccChhhH-HHHHHHHCCCCCChHHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHF---NVKHIATG-DILRSHIAQNTTLGL-KAKEYMNKGLLVPDDLMIDLVKNEV 79 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~~-d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 79 (228)
+.++.|+|+|+|||||||+++.|++.+ |.+++.+| |.++..+.....+.. .-...+. .+..++...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r--------~i~eva~~~l 121 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR--------RIAEVAKLFA 121 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH--------HHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH--------HHHHHHHHHH
Confidence 467789999999999999999999999 88777664 555543322111110 0000000 0111222222
Q ss_pred hccCCceEEcCCCCC----HHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhc
Q psy6801 80 KDLKCNYLLDGFPRT----YDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127 (228)
Q Consensus 80 ~~~~~~~ildg~p~~----~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~ 127 (228)
.. +..+|.+ +... ...+..+......|+++|||++|++++.+|+.+
T Consensus 122 ~~-G~iVI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 122 DA-GLVCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp HT-TCEEEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred hC-CCEEEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence 22 4444444 3221 333444433334577899999999999999874
No 85
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.28 E-value=2.7e-12 Score=102.65 Aligned_cols=119 Identities=21% Similarity=0.210 Sum_probs=69.8
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC--cceeehhHHHHHHHhc----cChhhHHHHHHHHCCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN--VKHIATGDILRSHIAQ----NTTLGLKAKEYMNKGLLVPDDLMIDLVKNE 78 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~--~~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
..|.+|+|.|+|||||||+++.|++.++ ..+++.|. ++..+.. ....|.....+.... ....+..++...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~-~r~~~~~~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~~~ 105 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS-FRSQHPHYLELQQEYGKDSVEYTKDF---AGKMVESLVTKL 105 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG-GGTTSTTHHHHHTTCSSTTHHHHHHH---HHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH-HHHhchhHHHHHHHcCchHHHHhhHH---HHHHHHHHHHHH
Confidence 4567899999999999999999999997 45667654 3332111 001111111111100 011122222332
Q ss_pred HhccCCceEEcCCCCCHHHHH----HHHhcCCCCCEEEEEEeCHHHHHHHHhcCc
Q psy6801 79 VKDLKCNYLLDGFPRTYDQAM----ALFKNHLSPNCVMHINVPKEVIIDRLSKRW 129 (228)
Q Consensus 79 l~~~~~~~ildg~p~~~~~~~----~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 129 (228)
+.. +.++|+|+++....+.. .+...+. +-.++++.+|++++.+|+..|.
T Consensus 106 ~~~-g~~vVid~~~~~~~~~~~~~~~l~~~g~-~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 106 SSL-GYNLLIEGTLRTVDVPKKTAQLLKNKGY-EVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHT-TCCEEEECCTTSSHHHHHHHHHHHHTTC-EEEEEEECCCHHHHHHHHHHHH
T ss_pred Hhc-CCCEEEeCCCCCHHHHHHHHHHHHHCCC-cEEEEEEeCCHHHHHHHHHHHH
Confidence 333 67899999887654433 2333322 2246788999999999998884
No 86
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.27 E-value=1.9e-11 Score=92.40 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=61.3
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHh---Ccceeehh-HHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHH--HH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHF---NVKHIATG-DILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVK--NE 78 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~---~~~~i~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 78 (228)
+.+..|+|+|++||||||+++.|++.+ |++++.++ +.++..+.....+...- ....+..+.. ..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 72 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED----------REENVRRIAEVAKL 72 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHH----------HHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccccc----------HHHHHHHHHHHHHH
Confidence 456789999999999999999999988 87777543 33332211100000000 0111111111 11
Q ss_pred HhccCCceEEcCCCCC----HHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 79 VKDLKCNYLLDGFPRT----YDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 79 l~~~~~~~ildg~p~~----~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+.. ...+++.++... ......+......|+.+|||++|++++.+|+.+|
T Consensus 73 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 73 FAD-AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHH-TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HHH-CCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 212 223344443221 2222223222235789999999999999997654
No 87
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.27 E-value=2.8e-11 Score=95.36 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=38.7
Q ss_pred CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHH
Q psy6801 105 HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184 (228)
Q Consensus 105 ~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 184 (228)
+..||++|||++|++++.+|+.+| |+.. .......+.+++..++..+ .
T Consensus 144 ~~~pD~vi~Ld~~~e~~~~Ri~~R------~r~~-----------------------e~~~~~~~~~rv~~~~~~~---~ 191 (230)
T 2vp4_A 144 HVQADLIIYLRTSPEVAYERIRQR------ARSE-----------------------ESCVPLKYLQELHELHEDW---L 191 (230)
T ss_dssp CCCCSEEEEEECCHHHHHHHHHHH------CCGG-----------------------GTTCCHHHHHHHHHHHHHH---H
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHc------CCcc-----------------------cccCcHHHHHHHHHHHHHH---H
Confidence 567999999999999999999877 1100 0001113344444433322 1
Q ss_pred HHh--hhCCcEEEEeCCCC-cchHHHHHHHHhhcCCC
Q psy6801 185 DYY--DNREVLDTFTGNTT-DEIWPRIYEHLNIRIPP 218 (228)
Q Consensus 185 ~~~--~~~~~~i~id~~~~-e~v~~~i~~~l~~~~~~ 218 (228)
..| ...+.+++||++.+ ++++++|.+.+...++.
T Consensus 192 ~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~~~~ 228 (230)
T 2vp4_A 192 IHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFDA 228 (230)
T ss_dssp TSCCSSCCCEEEEEECCC-------------------
T ss_pred HHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHHhhc
Confidence 222 23445789999999 99999999998876643
No 88
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.25 E-value=2.5e-11 Score=103.85 Aligned_cols=98 Identities=12% Similarity=0.082 Sum_probs=72.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
.+.+|+|+|+|||||||+|+.|++.+++.+++.|++ + . -......+...+.. +..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~-------~----------------~~~~~~~~~~~l~~-g~~ 311 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-G-------S----------------WQRCVSSCQAALRQ-GKR 311 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-C-------S----------------HHHHHHHHHHHHHT-TCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-H-------H----------------HHHHHHHHHHHHhc-CCc
Confidence 456899999999999999999999999999999775 0 0 11123334444555 788
Q ss_pred eEEcCCCCCHHHHHHHH----hcCCCCCEEEEEEeCHHHHHHHHhcCc
Q psy6801 86 YLLDGFPRTYDQAMALF----KNHLSPNCVMHINVPKEVIIDRLSKRW 129 (228)
Q Consensus 86 ~ildg~p~~~~~~~~l~----~~~~~~~~vi~l~~~~e~~~~R~~~R~ 129 (228)
+|+|+......+...+. .. ..+..+|||++|.+++.+|+..|.
T Consensus 312 vIiD~~~~~~~~r~~~~~~~~~~-~~~~~~v~l~~~~e~l~~R~~~R~ 358 (416)
T 3zvl_A 312 VVIDNTNPDVPSRARYIQCAKDA-GVPCRCFNFCATIEQARHNNRFRE 358 (416)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHH-TCCEEEEEECCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHc-CCeEEEEEEeCCHHHHHHHHHhhc
Confidence 99999766654444332 22 234468999999999999999994
No 89
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.21 E-value=1.5e-13 Score=106.78 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
+.|+|+|++||||||+++.|++.++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 36999999999999999999999854
No 90
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.20 E-value=2.5e-11 Score=96.26 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=24.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-Cc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-NV 33 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-~~ 33 (228)
|+.|+|+|++||||||+++.|++.+ +.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999 44
No 91
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.20 E-value=9.4e-10 Score=84.61 Aligned_cols=110 Identities=11% Similarity=0.035 Sum_probs=60.0
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh---Ccc--eeehhHHHHHHHhccChhhH-HHHHHHHCCCCCChHHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF---NVK--HIATGDILRSHIAQNTTLGL-KAKEYMNKGLLVPDDLMIDLVKNEV 79 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~---~~~--~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 79 (228)
.+.+|+|.|++||||||+++.|+..+ |.. +++.+++. ..+.....+.. .....+ .....+.....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 94 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR-HGLNRDLSFKAEDRAENI--------RRVGEVAKLFA 94 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT-TTTTTTCCSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh-hHhhcccCcChHHHHHHH--------HHHHHHHHHHH
Confidence 35689999999999999999999998 554 77875542 21111110100 000000 00011111111
Q ss_pred hccCCceEEcCCCCCHHHHHHHHhcCCC-CCEEEEEEeCHHHHHHHH
Q psy6801 80 KDLKCNYLLDGFPRTYDQAMALFKNHLS-PNCVMHINVPKEVIIDRL 125 (228)
Q Consensus 80 ~~~~~~~ildg~p~~~~~~~~l~~~~~~-~~~vi~l~~~~e~~~~R~ 125 (228)
.. +..+|.+...........+...... .-.+|||++|.+++.+|+
T Consensus 95 ~~-~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 95 DA-GIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HT-TCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred hC-CceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 11 5555655533333334444443122 224799999999999997
No 92
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.17 E-value=4.9e-10 Score=86.16 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=24.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
+.+.+|+|+||+||||||+++.|+..+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456899999999999999999998764
No 93
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.15 E-value=1.9e-10 Score=101.38 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=66.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCc-----ceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNV-----KHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKD 81 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (228)
+..|+|+|++||||||+|+.|++.++. .+++. |.++..+.....+...-.... -..+...+...+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~-D~ir~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l~~ 443 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG-DVVRTHLSRGLGFSKEDRITN-------ILRVGFVASEIVKH 443 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH-HHHHHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHHHT
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc-hHhhhhhcccccccHHHHHHH-------HHHHHHHHHHHHhC
Confidence 568999999999999999999999864 67776 455655432222211100000 00111222333333
Q ss_pred cCCceEEcCCCCCHHHHHHHHhcCCCCC-EEEEEEeCHHHHHHHHhc
Q psy6801 82 LKCNYLLDGFPRTYDQAMALFKNHLSPN-CVMHINVPKEVIIDRLSK 127 (228)
Q Consensus 82 ~~~~~ildg~p~~~~~~~~l~~~~~~~~-~vi~l~~~~e~~~~R~~~ 127 (228)
+.++|+|+..........+......++ .+|||++|.+++.+|+.+
T Consensus 444 -G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r 489 (546)
T 2gks_A 444 -NGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVK 489 (546)
T ss_dssp -TCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCS
T ss_pred -CCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhc
Confidence 778899963322222233333312257 799999999999999763
No 94
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.11 E-value=7e-11 Score=91.04 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=68.1
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHh-CcceeehhHHHHHHHh---ccC----hhhHHHHHHHHCCCCCChH-------
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHF-NVKHIATGDILRSHIA---QNT----TLGLKAKEYMNKGLLVPDD------- 69 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~-~~~~i~~~d~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~------- 69 (228)
+.+.+|+|+|++||||||+++.|+..+ ....+..++..+.... ... ............+..+...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence 456789999999999999999999877 2111111111110000 000 0001122222222111100
Q ss_pred -HHHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCC-EEEEEE-eCHHHHHHHHhcCccCCCCCcccccCCCCCC
Q psy6801 70 -LMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPN-CVMHIN-VPKEVIIDRLSKRWIHPASGRVYNLDFNAPK 146 (228)
Q Consensus 70 -~~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~-~vi~l~-~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~ 146 (228)
.....+...+.. +..+|+|+.+....+.. .. + |+ .++++. ++.+++.+|+..|.
T Consensus 84 g~~~~~i~~~l~~-g~~vv~d~~~~~~~~~~---~~-~-~~~~~i~~~~~~~~~~~~Rl~~R~----------------- 140 (207)
T 2j41_A 84 GTPVQYVKDTMDE-GHDVFLEIEVEGAKQVR---KK-F-PDALFIFLAPPSLEHLRERLVGRG----------------- 140 (207)
T ss_dssp EEEHHHHHHHHHT-TCEEEEECCGGGHHHHH---HH-C-TTSEEEEEECCC-----------------------------
T ss_pred CCCHHHHHHHHHc-CCeEEEEECHHHHHHHH---Hh-c-CCeEEEEEECCCHHHHHHHHHhcC-----------------
Confidence 011233444444 77889998554443332 22 2 35 344444 56789999998871
Q ss_pred CCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 147 KPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
....+.+.+++..+.... .++...+ ++ |+++ + ++++++|.+.+...
T Consensus 141 ----------------~~~~~~~~~rl~~~~~~~----~~~~~~d-~v-I~n~-~~e~~~~~i~~~l~~~ 187 (207)
T 2j41_A 141 ----------------TESDEKIQSRINEARKEV----EMMNLYD-YV-VVND-EVELAKNRIQCIVEAE 187 (207)
T ss_dssp -------------------------------CGG----GGGGGCS-EE-EECS-SHHHHHHHHHHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHHH----hccccCC-EE-EECC-CHHHHHHHHHHHHHHh
Confidence 122345555666554332 2233333 33 4444 7 99999999988754
No 95
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=3.5e-10 Score=87.63 Aligned_cols=165 Identities=13% Similarity=0.170 Sum_probs=82.0
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc-ceeehhHHHHHHHh---ccC----hhhHHHHHHHHCCCCCCh--------H
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV-KHIATGDILRSHIA---QNT----TLGLKAKEYMNKGLLVPD--------D 69 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~-~~i~~~d~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~--------~ 69 (228)
.+..|+|.||+||||||+++.|++.+.. .........+..-. .+. .........+..+..+.. .
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg 86 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG 86 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence 3568999999999999999999998742 11110000000000 000 000111111221211100 0
Q ss_pred HHHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeC-HHHHHHHHhcCccCCCCCcccccCCCCCCCC
Q psy6801 70 LMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVP-KEVIIDRLSKRWIHPASGRVYNLDFNAPKKP 148 (228)
Q Consensus 70 ~~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~ 148 (228)
.....+...+.. +..+|+|..+.... .+... .....+||+..| .+++.+|+.+|.
T Consensus 87 ~~~~~i~~~l~~-g~~vild~~~~g~~---~~~~~-~~~~~~i~i~~ps~~~l~~Rl~~R~------------------- 142 (208)
T 3tau_A 87 TPLEYVEEKLAA-GVDIFLEIEVQGAM---QVRKA-MPEGIFIFLTPPDLSELKNRIIGRG------------------- 142 (208)
T ss_dssp EEHHHHHHHHHT-TCCEEEECCHHHHH---HHHHH-CTTSEEEEEECTTTTTSSCC------------------------
T ss_pred CcHHHHHHHHHc-CCeEEEEeeHHHHH---HHHHh-CCCeEEEEEeCCCHHHHHHHHHhcC-------------------
Confidence 011223444555 88899988543333 33333 222256676655 788898988881
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 149 GIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
.+.++.+.+++..+... ..++...+. +.+| ++ ++++++|.+.|...
T Consensus 143 --------------~~~~e~i~~Rl~~~~~e----~~~~~~~d~-vivN--~~~~~~~~~l~~~i~~~ 189 (208)
T 3tau_A 143 --------------TESMEVVEERMETAKKE----IEMMASYDY-AVVN--DVVANAVQKIKGIVETE 189 (208)
T ss_dssp ----------------CCHHHHHHHHHHHHH----HHHGGGSSE-EEEC--SSHHHHHHHHHHHHHHH
T ss_pred --------------CCCHHHHHHHHHHHHHH----HHhhccCCE-EEEC--cCHHHHHHHHHHHHHHH
Confidence 23446777787766533 233333333 3343 26 89999998888653
No 96
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.07 E-value=2.4e-10 Score=91.32 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=67.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHH-HHHh--ccChhhHHHHH---HHHCCC-----CCChHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILR-SHIA--QNTTLGLKAKE---YMNKGL-----LVPDDLMIDLVK 76 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~-~~~~--~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~ 76 (228)
++|+|+||+||||||+|+.|++.++..+++.|++.. ..+. ...+....... .+..-. ......+...+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 479999999999999999999999999999988631 1110 00000000000 000000 122334444444
Q ss_pred HHHhcc---CCceEEcCCCCCHHHHHHHHhc-C--CCCC-EEEEEEeCH-HHHHHHHhcCc
Q psy6801 77 NEVKDL---KCNYLLDGFPRTYDQAMALFKN-H--LSPN-CVMHINVPK-EVIIDRLSKRW 129 (228)
Q Consensus 77 ~~l~~~---~~~~ildg~p~~~~~~~~l~~~-~--~~~~-~vi~l~~~~-e~~~~R~~~R~ 129 (228)
..+ +. +..+|+++-.. ...+.+... . ...+ .+|||++|. +++.+|+.+|.
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHH-HHHhCCCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 444 22 56677775211 222333221 0 1122 689999997 99999999984
No 97
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.03 E-value=9.7e-10 Score=83.61 Aligned_cols=162 Identities=16% Similarity=0.159 Sum_probs=86.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCc-ceeehhHHHHHHHh---ccCh----hhHHHHHHHHCCCCCChH--------HHHH
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFNV-KHIATGDILRSHIA---QNTT----LGLKAKEYMNKGLLVPDD--------LMID 73 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~~-~~i~~~d~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~--------~~~~ 73 (228)
|+|+||+||||||+++.|.+.+.- ..++....-|..-. .+.+ ....+...+..|..+.-. ....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~ 83 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA 83 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecc
Confidence 899999999999999999887632 11111001110000 0000 012233344444321110 0123
Q ss_pred HHHHHHhccCCceEEcCCCCCHHHHHHHHhc-CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCCCCCCCCCCc
Q psy6801 74 LVKNEVKDLKCNYLLDGFPRTYDQAMALFKN-HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDD 152 (228)
Q Consensus 74 ~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~-~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~~~~ 152 (228)
.+...+.. +..+|+|.-+. -+..+... +..+..++.+..+.+++.+|+..|
T Consensus 84 ~v~~~l~~-g~~vil~id~~---g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~R------------------------ 135 (186)
T 1ex7_A 84 SVKQVSKS-GKTCILDIDMQ---GVKSVKAIPELNARFLFIAPPSVEDLKKRLEGR------------------------ 135 (186)
T ss_dssp HHHHHHHH-TSEEEEECCHH---HHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHH------------------------
T ss_pred eeeehhhC-CCEEEecCCHH---HHHHHHHhcccCceEEEEeCCCHHHHHHHHHhc------------------------
Confidence 34444544 88899987433 33344432 123434444555679999999998
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhh-hCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 153 ITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYD-NREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~-~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
..++++.+.+|+........ .+.. ..+ .+.+| .+ ++.+++|.+.|..
T Consensus 136 ---------g~e~~e~i~~Rl~~a~~e~~---~~~~~~fD-~vIvN--ddle~a~~~l~~iI~a 184 (186)
T 1ex7_A 136 ---------GTETEESINKRLSAAQAELA---YAETGAHD-KVIVN--DDLDKAYKELKDFIFA 184 (186)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH---HHTTTCSS-EEEEC--SSHHHHHHHHHHHHTT
T ss_pred ---------CCCCHHHHHHHHHHHHHHHh---hccccCCc-EEEEC--cCHHHHHHHHHHHHHh
Confidence 23567888888877654321 1111 122 33343 36 8888888888753
No 98
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.01 E-value=5.7e-10 Score=98.83 Aligned_cols=110 Identities=10% Similarity=0.109 Sum_probs=61.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC----c--ceeehhHHHHHHHhccChhhHHHHH-HHHCCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN----V--KHIATGDILRSHIAQNTTLGLKAKE-YMNKGLLVPDDLMIDLVKNE 78 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~----~--~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (228)
.++.|+|+|++||||||+|+.|++.++ . .+++. |.++..+.....+...-+. .+ ..+..++...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er~~~i--------~ri~~v~~~~ 465 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDRHTNI--------QRIAFVATEL 465 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHHHHHH--------HHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHHHHHH--------HHHHHHHHHH
Confidence 456899999999999999999999986 2 45665 4555543222111110000 00 0111222322
Q ss_pred HhccCCceEEcCCCC---CHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHh
Q psy6801 79 VKDLKCNYLLDGFPR---TYDQAMALFKNHLSPNCVMHINVPKEVIIDRLS 126 (228)
Q Consensus 79 l~~~~~~~ildg~p~---~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~ 126 (228)
+.. +..+|++.... .+..+..+... ..+..+|||++|.+++.+|..
T Consensus 466 ~~~-g~~VI~~~is~~~~~R~~~r~l~~~-~g~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 466 TRA-GAAVIAAPIAPYEESRKFARDAVSQ-AGSFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp HHT-TCEEEEECCCCCHHHHHHHHHHHHT-TSEEEEEEECCCHHHHHHHCS
T ss_pred HhC-CCEEEEEcCCCcHHHHHHHHHHHHh-cCCeEEEEEeCCHHHHHHHhc
Confidence 332 55555664221 22333333322 124579999999999999953
No 99
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.96 E-value=3.4e-09 Score=92.95 Aligned_cols=117 Identities=16% Similarity=0.194 Sum_probs=65.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc-----ceeehhHHHHHHHhccChhhHHHHHHHHC-CCC---CChHHHH---H
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV-----KHIATGDILRSHIAQNTTLGLKAKEYMNK-GLL---VPDDLMI---D 73 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~---~ 73 (228)
.+..|+++|+|||||||+|+.|++.++. .+|+.|++.+........ . +++.. +.. ....... .
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~-~----~~f~~~~~~~~~~re~~~~~~l~ 108 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSS-Y----NFFRPDNEEAMKVRKQCALAALR 108 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCC-G----GGGCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCcc-c----cccCcccHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999844 347888865554322110 0 01110 000 0001111 1
Q ss_pred HHHHHHh-ccCCceEEcCCCCCHHHHHHHH----hcCCCCCEEEEEEeC-HHHHHHHHhcC
Q psy6801 74 LVKNEVK-DLKCNYLLDGFPRTYDQAMALF----KNHLSPNCVMHINVP-KEVIIDRLSKR 128 (228)
Q Consensus 74 ~~~~~l~-~~~~~~ildg~p~~~~~~~~l~----~~~~~~~~vi~l~~~-~e~~~~R~~~R 128 (228)
.+...+. ..+..+|+|+..........+. ..+. .-++|++.|+ ++++.+|+..|
T Consensus 109 ~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~-~v~~l~~~~~d~e~i~~ri~~r 168 (520)
T 2axn_A 109 DVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDF-KAFFIESVCDDPTVVASNIMEV 168 (520)
T ss_dssp HHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCC-eEEEEEEeCChHHHHHHHHHhh
Confidence 1122231 1167799999766655444332 2211 2346677777 67888888766
No 100
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.92 E-value=1.4e-08 Score=77.10 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=63.6
Q ss_pred CCcccccceEEEEcCCCCChHHHHHHHHHHhCcc--eeehhHHHHHHHhccChhhHHHHHHHHCCCCCC-----hHHHHH
Q psy6801 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDHFNVK--HIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP-----DDLMID 73 (228)
Q Consensus 1 m~~~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 73 (228)
|+....+.+|+|+|++||||||+++.|+..++.. +++.+++... ....... ..++ ...+..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~-~~~~~~~-----------~~~~~~~~~~~~v~~ 70 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY-IKHGRID-----------PWLPQSHQQNRMIMQ 70 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT-CCSSCCC-----------TTSSSHHHHHHHHHH
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh-hhccccc-----------CCccchhhhhHHHHH
Confidence 3344456789999999999999999999987544 6777665432 1110000 0010 111111
Q ss_pred HHHHH---HhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 74 LVKNE---VKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 74 ~~~~~---l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.+... ....+..+++|++.... ....+..... +-.++++.++.+++..|+..|
T Consensus 71 ~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~-~~~~ls~~~~~~v~~~R~~~r 126 (191)
T 1zp6_A 71 IAADVAGRYAKEGYFVILDGVVRPD-WLPAFTALAR-PLHYIVLRTTAAEAIERCLDR 126 (191)
T ss_dssp HHHHHHHHHHHTSCEEEECSCCCTT-TTHHHHTTCS-CEEEEEEECCHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCeEEEeccCcHH-HHHHHHhcCC-CeEEEEecCCHHHHHHHHHhc
Confidence 11111 11104457788754432 2223332111 235799999999999999988
No 101
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.91 E-value=5.1e-09 Score=79.56 Aligned_cols=164 Identities=18% Similarity=0.175 Sum_probs=63.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCc----ceeehhHHHHH----HHhccChhhHHHHHHHHCCCCCC-----hH---HH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNV----KHIATGDILRS----HIAQNTTLGLKAKEYMNKGLLVP-----DD---LM 71 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~----~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~ 71 (228)
.+++|+||+||||||+++.|+..+.- .+...+..-+. ..................+..+. .. .-
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~~ 81 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccCc
Confidence 46899999999999999999976531 00000000000 00000000011111111111100 00 00
Q ss_pred HHHHHHHHhccCCceEEcCCCCCHHHHHHHHh-cCCCCCEEEEEEeCH-HHHHHHHhcCccCCCCCcccccCCCCCCCCC
Q psy6801 72 IDLVKNEVKDLKCNYLLDGFPRTYDQAMALFK-NHLSPNCVMHINVPK-EVIIDRLSKRWIHPASGRVYNLDFNAPKKPG 149 (228)
Q Consensus 72 ~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~-~~~~~~~vi~l~~~~-e~~~~R~~~R~~~~~~g~~~~~~~~~p~~~~ 149 (228)
...+...+.. +..+|+|.- ...+..+.. .+.. ..+||+.+|. +++.+|+..|.
T Consensus 82 ~~~i~~~l~~-g~~~il~~~---~~g~~~l~~~~~~~-~~~i~i~~p~~~~l~~Rl~~Rg-------------------- 136 (186)
T 3a00_A 82 VASVKQVSKS-GKTCILDID---MQGVKSVKAIPELN-ARFLFIAPPSVEDLKKRLEGRG-------------------- 136 (186)
T ss_dssp HHHHHHHHHT-TCEEEEECC---HHHHHHHHTCGGGC-CEEEEEECSCC-------------------------------
T ss_pred HHHHHHHHHc-CCeEEEEEc---HHHHHHHHHhcCCC-eEEEEEECcCHHHHHHHHHhcC--------------------
Confidence 1233444554 778888753 233444544 3233 3578888866 99999999882
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 150 IDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
.+.++.+++|+....... ...+......+.++ + + ++.+++|.+.|..
T Consensus 137 -------------~~~~~~i~~rl~~~~~~~---~~~~~~~~d~vi~n-d-~~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 137 -------------TETEESINKRLSAAQAEL---AYAETGAHDKVIVN-D-DLDKAYKELKDFIFA 184 (186)
T ss_dssp --------------------------------------CCCCSEEEEC-S-SHHHHHHHHHHHHTT
T ss_pred -------------CCCHHHHHHHHHHHHHHH---HhhcccCCcEEEEC-c-CHHHHHHHHHHHHHh
Confidence 233455566666554331 11111211233343 3 6 8889998888754
No 102
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.91 E-value=3.1e-08 Score=75.21 Aligned_cols=110 Identities=18% Similarity=0.125 Sum_probs=61.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCc-ceeehhHHHHHHHhc-cChhhHHHHHHHHCCCCCChHHHHHHH----HHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNV-KHIATGDILRSHIAQ-NTTLGLKAKEYMNKGLLVPDDLMIDLV----KNEVK 80 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~-~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~ 80 (228)
+.+++|+||+||||||+++.|+..++. .+++.+++....... ..+..... ....+...+ .....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDE----------LLALTWKNITDLTVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHH----------HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchh----------HHHHHHHHHHHHHHHHHh
Confidence 347899999999999999999998765 678876653211000 00000000 000111111 11122
Q ss_pred ccCCceEEcCCCCCHHHHHHHHhc----CCC-CCEEEEEEeCHHHHHHHHhcC
Q psy6801 81 DLKCNYLLDGFPRTYDQAMALFKN----HLS-PNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 81 ~~~~~~ildg~p~~~~~~~~l~~~----~~~-~~~vi~l~~~~e~~~~R~~~R 128 (228)
. +..+|+|++- .......+... +.. ...+++|.++.+.+.+|...|
T Consensus 72 ~-~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r 122 (189)
T 2bdt_A 72 A-QNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR 122 (189)
T ss_dssp T-TCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTS
T ss_pred c-CCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhc
Confidence 2 5578899852 22222222111 222 234688999999999999988
No 103
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.91 E-value=5.8e-09 Score=86.19 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=26.5
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
++.++.|+|+|+.||||||+++.|++.++.
T Consensus 4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 4 MVTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 445678999999999999999999999854
No 104
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.90 E-value=6.5e-09 Score=79.64 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=68.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC---cceeehhHHHHHHHhccC--hhhHH-------------HHHHHHCCCCCCh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN---VKHIATGDILRSHIAQNT--TLGLK-------------AKEYMNKGLLVPD 68 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~---~~~i~~~d~~~~~~~~~~--~~~~~-------------~~~~~~~~~~~~~ 68 (228)
+++|+|+|.|||||+|+|+.|.+.++ ++.++++|.+++...... ++... +..+...-.....
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~ 90 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 90 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCT
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCc
Confidence 45899999999999999999999884 778999999986443211 11111 1000000000000
Q ss_pred HHHHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHH
Q psy6801 69 DLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125 (228)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~ 125 (228)
..+..++...+. ...|||||. +....++.|...+...-.+|.+.+++++..+|.
T Consensus 91 ~~~~~~~~~~~~--~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 91 GFFCRKIVEGIS--QPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp TTTHHHHSBTCC--CSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred hHHHHHHHHhcC--CCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence 011111111111 456889986 455566667654222234799999999999993
No 105
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.78 E-value=3.3e-08 Score=76.29 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=32.3
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC--cceeehhHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN--VKHIATGDIL 42 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~--~~~i~~~d~~ 42 (228)
..+.+|+|.|++||||||+++.|+..++ +.+++.|..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 3456899999999999999999999988 8888876653
No 106
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.74 E-value=7.8e-08 Score=79.56 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=25.8
Q ss_pred cccceEEEEcCCCCChHHHH-HHHHHHhCc
Q psy6801 5 LLMLKAVIIGAPGCGKGTIS-SRIIDHFNV 33 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a-~~L~~~~~~ 33 (228)
+.++.|+|.|+.||||||++ +.|++.++.
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 45678999999999999999 999998864
No 107
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.69 E-value=1.1e-08 Score=84.52 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
+.|+|+||+||||||++..||++++..+|++|.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 5799999999999999999999999999998775
No 108
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.65 E-value=5.5e-07 Score=71.24 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=25.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVK 34 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~ 34 (228)
.+.+|.|.||+||||||+++.|+..+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 35689999999999999999999988865
No 109
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.65 E-value=1.1e-07 Score=77.16 Aligned_cols=167 Identities=14% Similarity=0.106 Sum_probs=96.0
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
.++.|+|.|..||||+|++++|.+.++-..+.+--+ ..|.+.... .. +.......+-..+..
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~-------~~Pt~eE~~------~~-----yl~R~~~~LP~~G~I 146 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL-------TKPTETERG------QW-----YFQRYVATFPTAGEF 146 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC-------CSCCHHHHT------SC-----TTHHHHTTCCCTTCE
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe-------CCcChHHHh------ch-----HHHHHHHhcccCCeE
Confidence 467899999999999999999999995443322000 111111111 01 111112222111666
Q ss_pred eEEcCCC--C----------C-------HHHHHHH----HhcCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCC
Q psy6801 86 YLLDGFP--R----------T-------YDQAMAL----FKNHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDF 142 (228)
Q Consensus 86 ~ildg~p--~----------~-------~~~~~~l----~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~ 142 (228)
+|+|.+- + + ..++..| ... ..|++.|||++++++..+|+..|..++...
T Consensus 147 vIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~-G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~------- 218 (304)
T 3czq_A 147 VLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANE-GIHLFKFWINIGREMQLKRFHDRRHDPLKI------- 218 (304)
T ss_dssp EEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH-TCEEEEEEEECCHHHHHHHHHHHHHCTTTG-------
T ss_pred EEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhC-CCeeEEEEEECCHHHHHHHHHHhhcCcccc-------
Confidence 7777521 1 1 1222232 222 368899999999999999998884332210
Q ss_pred CCCCCCCCCcccccccccCCCCcHHHHH--HHHHHHHhcHHHHHHHhhh-CCcEEEEeCCCC----cchHHHHHHHHhhc
Q psy6801 143 NAPKKPGIDDITGEKLIQRDDDKPEAIK--KRLETFDQTIKPLLDYYDN-REVLDTFTGNTT----DEIWPRIYEHLNIR 215 (228)
Q Consensus 143 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~~~~~~~~~~~~-~~~~i~id~~~~----e~v~~~i~~~l~~~ 215 (228)
=..++..+. +.+..|...+..+...-.. ..-+++|++++. -.+.+.|.+.|...
T Consensus 219 -------------------Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~~ 279 (304)
T 3czq_A 219 -------------------WKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYD 279 (304)
T ss_dssp -------------------GGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCCT
T ss_pred -------------------cCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhhc
Confidence 011233333 4567777777777665442 335889999984 55666666666655
Q ss_pred CC
Q psy6801 216 IP 217 (228)
Q Consensus 216 ~~ 217 (228)
..
T Consensus 280 ~~ 281 (304)
T 3czq_A 280 GK 281 (304)
T ss_dssp TC
T ss_pred cC
Confidence 54
No 110
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.65 E-value=1.6e-07 Score=73.62 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=16.6
Q ss_pred cceEEEEcCCCCChHHHHHHHH-HHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRII-DHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~-~~~ 31 (228)
+.+|+|+||+||||||+++.|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999999 655
No 111
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.64 E-value=1.1e-08 Score=84.56 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=33.0
Q ss_pred CCcccccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 1 m~~~~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
|+.|.++.+|+|+||+||||||+|..|++.++..+|++|++
T Consensus 1 ~~~m~m~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 1 MTEMTKPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred CCCCCCCceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 77775556899999999999999999999999999998876
No 112
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.61 E-value=5.5e-08 Score=74.72 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=50.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh---Cc--ceeehhHHHHHH---HhccChhhHHHHHHHHCCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF---NV--KHIATGDILRSH---IAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKN 77 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~---~~--~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
.+.+|+|.|++||||||+++.|+..+ +. .+++.|.+.+.. ...+.+.+. .+.. + .+....+.+.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~---~~~~-~-~~d~~~l~~~v~~ 95 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF---EYYY-L-QWDVEWLTHQLFR 95 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHH---HHHH-T-SSCHHHHHHHTGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCcc---CCCc-c-ccCHHHHHHHHHH
Confidence 35689999999999999999999876 33 344555443211 111111111 1111 1 1122222222111
Q ss_pred HHh--------------------cc----CCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 78 EVK--------------------DL----KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 78 ~l~--------------------~~----~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
.+. .. +..+|+||...... .+.. .+|.+||+++|.+++.+|+..|
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~~---~~d~~i~v~~~~~~~~~R~~~R 164 (201)
T 1rz3_A 96 QLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRK---EWRP---FFDFVVYLDCPREIRFARENDQ 164 (201)
T ss_dssp GTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTST---TTGG---GCSEEEEECCC-----------
T ss_pred HHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccH---HHHh---hcCEEEEEeCCHHHHHHHHhcC
Confidence 100 00 44577888321111 1222 2689999999999999999998
No 113
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.57 E-value=3.1e-07 Score=76.83 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=23.4
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
++.++.|+|+|+.||||||+++.|++.++
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567899999999999999999999885
No 114
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.57 E-value=2.3e-07 Score=76.58 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=22.5
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
+.++.|+|+|+.||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456799999999999999999999875
No 115
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.55 E-value=2.8e-07 Score=69.45 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=24.2
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
+.+..++|+||+||||||+++.|+..+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3456899999999999999999998763
No 116
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.54 E-value=4.3e-07 Score=78.68 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=61.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHHHHHHhccC------hhhHHHHHHHHCCCCCChHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDILRSHIAQNT------TLGLKAKEYMNKGLLVPDDLMIDL 74 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 74 (228)
.+.+|+++|.|||||||++++|++.++ ...++.+++.+....... ..+....... .......
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~r-------e~~~~~~ 110 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIR-------KQCALAA 110 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHH-------HHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHH-------HHHHHHH
Confidence 345899999999999999999999874 456677665444221100 1111000000 0111111
Q ss_pred H---HHHHhcc-CCceEEcCCCCCHHHHHHH----HhcCCCCCEEEEEE---eCHHHHHHHHhcC
Q psy6801 75 V---KNEVKDL-KCNYLLDGFPRTYDQAMAL----FKNHLSPNCVMHIN---VPKEVIIDRLSKR 128 (228)
Q Consensus 75 ~---~~~l~~~-~~~~ildg~p~~~~~~~~l----~~~~~~~~~vi~l~---~~~e~~~~R~~~R 128 (228)
+ ...+... +..+|+|+..........+ ...+ ..++||. .+++.+.+|+..+
T Consensus 111 l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~---~~vv~l~~~~~~~~~i~~r~~~~ 172 (469)
T 1bif_A 111 LNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNG---YKTFFVESICVDPEVIAANIVQV 172 (469)
T ss_dssp HHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHT---CEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcC---CcEEEEEEECCCHHHHHHHHHHh
Confidence 1 3333222 5678999865565444433 2221 1356666 4578888887754
No 117
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.49 E-value=2.6e-07 Score=81.42 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=29.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC------cceeehhHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN------VKHIATGDIL 42 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~------~~~i~~~d~~ 42 (228)
.+..|+|+|++||||||+++.|+..++ +.+++.|++.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 346899999999999999999999984 4457775553
No 118
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.49 E-value=7.1e-09 Score=85.37 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=30.0
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC-------cceeehhHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN-------VKHIATGDI 41 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~-------~~~i~~~d~ 41 (228)
.|.+|.|.|++||||||+++.|+..++ +.+++.|++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 466899999999999999999998875 455777665
No 119
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.47 E-value=1.5e-07 Score=72.59 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=29.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDI 41 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~ 41 (228)
+.+|+|.|++||||||+++.|+..+. ...+..|+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 46899999999999999999999885 556766553
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.41 E-value=9.9e-06 Score=63.01 Aligned_cols=165 Identities=13% Similarity=0.124 Sum_probs=83.8
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC---cce-eehhHH-HHHH----HhccChhhHHHHHHHHCCC-----CCChH-
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN---VKH-IATGDI-LRSH----IAQNTTLGLKAKEYMNKGL-----LVPDD- 69 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~---~~~-i~~~d~-~~~~----~~~~~~~~~~~~~~~~~~~-----~~~~~- 69 (228)
..+..++|+||+||||||+.+.|+..+. ... ++.... .+.. +..-.............+. .....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~ 93 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY 93 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence 3456899999999999999999988764 111 111000 0000 0000000011111111110 00000
Q ss_pred --HHHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEE-eCHHHHHHHHhcCccCCCCCcccccCCCCCC
Q psy6801 70 --LMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHIN-VPKEVIIDRLSKRWIHPASGRVYNLDFNAPK 146 (228)
Q Consensus 70 --~~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~-~~~e~~~~R~~~R~~~~~~g~~~~~~~~~p~ 146 (228)
.....+...+.. ++.+|+| -+...+..+... +.-..+|++. -+.+.+.+|+..|
T Consensus 94 yg~~~~~v~~~l~~-G~illLD---LD~~~~~~i~~~-l~~~~tI~i~th~~~~l~~Rl~~r------------------ 150 (219)
T 1s96_A 94 YGTSREAIEQVLAT-GVDVFLD---IDWQGAQQIRQK-MPHARSIFILPPSKIELDRRLRGR------------------ 150 (219)
T ss_dssp EEEEHHHHHHHHTT-TCEEEEE---CCHHHHHHHHHH-CTTCEEEEEECSSHHHHHHHHHTT------------------
T ss_pred CCCCHHHHHHHHhc-CCeEEEE---ECHHHHHHHHHH-ccCCEEEEEECCCHHHHHHHHHHc------------------
Confidence 001224444544 7889999 344444444443 2223445554 4668899998777
Q ss_pred CCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhh
Q psy6801 147 KPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214 (228)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~ 214 (228)
..++++.+.+|+....... .++...+. +.++ .+ ++.++++.+.|..
T Consensus 151 ---------------G~~~~e~i~~rl~~a~~e~----~~~~~~d~-~i~N--d~l~~a~~~l~~ii~~ 197 (219)
T 1s96_A 151 ---------------GQDSEEVIAKRMAQAVAEM----SHYAEYDY-LIVN--DDFDTALTDLKTIIRA 197 (219)
T ss_dssp ---------------SCSCHHHHHHHHHHHHHHH----TTGGGSSE-EEEC--SSHHHHHHHHHHHHHH
T ss_pred ---------------CCCCHHHHHHHHHHHHHHH----hhccCCCE-EEEC--cCHHHHHHHHHHHHHH
Confidence 2345677887776554321 12222333 3343 46 8888888888864
No 121
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.38 E-value=1.5e-07 Score=77.33 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=32.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
++.|+|+||+||||||++..|++.++..+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 34799999999999999999999999999998765
No 122
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.37 E-value=2.2e-07 Score=75.72 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=32.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
.++..|+|+||+||||||++..|++.++..+|+.|.+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 3466899999999999999999999999988887653
No 123
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.32 E-value=2.4e-05 Score=59.68 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+..++|+||+||||||+.+.|...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998765
No 124
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.28 E-value=2.2e-07 Score=75.56 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=30.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGDILR 43 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d~~~ 43 (228)
.+++|+|.|++||||||+|+.|++.++ +.++++|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 356899999999999999999999887 78999988764
No 125
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.27 E-value=1.4e-05 Score=61.06 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.8
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
|.+..|+|.||+||||||+++.|.+.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4566899999999999999999998874
No 126
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.26 E-value=4.8e-07 Score=73.86 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=32.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~ 41 (228)
|++++|+|.||+||||||++..|++.++..+|+.|.+
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4566899999999999999999999999888888664
No 127
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.24 E-value=1.6e-05 Score=59.29 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=61.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCce
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
+.+++|+|++||||||+++.+.. +...++. +.++..+.+........... .+.........+.. +...
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-g~~~ 76 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLMSDDENDQTVTGAA--------FDVLHYIVSKRLQL-GKLT 76 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHHCSSTTCGGGHHHH--------HHHHHHHHHHHHHT-TCCE
T ss_pred CEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHhcCcccchhhHHHH--------HHHHHHHHHHHHhC-CCeE
Confidence 45899999999999999998642 4556666 44454443321100000000 00111112222222 5667
Q ss_pred EEcCCCCC---HHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 87 LLDGFPRT---YDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 87 ildg~p~~---~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
++|..... ..|.-.+...-...-.+++|+-|...+..|.+.|
T Consensus 77 ~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 77 VVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 77764333 3333334433222235899999999999998888
No 128
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.23 E-value=2.2e-06 Score=74.38 Aligned_cols=166 Identities=13% Similarity=0.147 Sum_probs=92.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc---
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--- 82 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 82 (228)
.++.|+|.|.+||||+|+.++|.+.++-..+.+-.+ ..|..... +.. .+.......
T Consensus 299 ~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~-------~~Pt~~E~------~~~--------yl~R~~~~lP~~ 357 (500)
T 3czp_A 299 HSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPI-------AAPTEEER------AQP--------YLWRFWRHIPAR 357 (500)
T ss_dssp CEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEEC-------CSCCHHHH------TSC--------TTHHHHTTCCCT
T ss_pred CCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEe-------CCCChhhh------cch--------HHHHHHHhCCCC
Confidence 577899999999999999999999985433322000 01111100 000 001111112
Q ss_pred CCceEEcCCC--C----------C-------HHHHHHHHhc---CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCccccc
Q psy6801 83 KCNYLLDGFP--R----------T-------YDQAMALFKN---HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNL 140 (228)
Q Consensus 83 ~~~~ildg~p--~----------~-------~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~ 140 (228)
+..+|+|.+- + + ..++..|+.. ...+.+.+||++|.++..+|+..|..++..-
T Consensus 358 G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~----- 432 (500)
T 3czp_A 358 RQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKR----- 432 (500)
T ss_dssp TCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTT-----
T ss_pred CeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCccc-----
Confidence 6667777521 1 1 1222233111 1347789999999999999999996544320
Q ss_pred CCCCCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhh-CCcEEEEeCCC---C-cchHHHHHHHHhhc
Q psy6801 141 DFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDN-REVLDTFTGNT---T-DEIWPRIYEHLNIR 215 (228)
Q Consensus 141 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~i~id~~~---~-e~v~~~i~~~l~~~ 215 (228)
|-. .+.|- .-.++...|...+..+...-.. ..-.++|++++ . -.+.+.|.+.|...
T Consensus 433 -------Wk~----------s~~D~--~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~~ 493 (500)
T 3czp_A 433 -------YKI----------TEEDW--RNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAA 493 (500)
T ss_dssp -------SCC----------CSSTT--TGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCC----------CHHHH--HHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHHH
Confidence 000 00010 1113355666666666655443 22478899998 3 56777777777665
Q ss_pred C
Q psy6801 216 I 216 (228)
Q Consensus 216 ~ 216 (228)
|
T Consensus 494 l 494 (500)
T 3czp_A 494 Y 494 (500)
T ss_dssp H
T ss_pred H
Confidence 5
No 129
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.21 E-value=2.3e-06 Score=74.28 Aligned_cols=170 Identities=12% Similarity=0.047 Sum_probs=86.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCN 85 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (228)
.++.|+|.|.+||||+|+++.|.+.++-..+.+-.+ ..|..... +... +.. ....+-..+..
T Consensus 42 ~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~-------~~Pt~~E~------~~~y----l~R-~~~~lP~~G~I 103 (500)
T 3czp_A 42 FPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSF-------LRPSDEEL------ERPP----QWR-FWRRLPPKGRT 103 (500)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC-------SSCCHHHH------TSCT----THH-HHHHCCCTTCE
T ss_pred CCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEe-------CCCChhhc------cCCh----hhh-HHHhCCCCCeE
Confidence 567899999999999999999999996543332000 00110000 0000 000 01111111444
Q ss_pred eEEcCC-------------CC------CHHHHHHHHh---cCCCCCEEEEEEeCHHHHHHHHhcCccCCCCCcccccCCC
Q psy6801 86 YLLDGF-------------PR------TYDQAMALFK---NHLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFN 143 (228)
Q Consensus 86 ~ildg~-------------p~------~~~~~~~l~~---~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~ 143 (228)
+|+|++ .. -..++..|+. ....+++.+||++|.++..+|+..|..++..-
T Consensus 104 vIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~-------- 175 (500)
T 3czp_A 104 GIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHS-------- 175 (500)
T ss_dssp EEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC------------------
T ss_pred EEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCccc--------
Confidence 555531 00 1223333321 13457789999999999999999995443210
Q ss_pred CCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhh-CCcEEEEeCCC---C-cchHHHHHHHHhhcCC
Q psy6801 144 APKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDN-REVLDTFTGNT---T-DEIWPRIYEHLNIRIP 217 (228)
Q Consensus 144 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~i~id~~~---~-e~v~~~i~~~l~~~~~ 217 (228)
|-. .+.|. .-.+++..|...+..++..-.. ..-.++|++++ . ..+.+.|.+.|...+.
T Consensus 176 ----Wk~----------s~~D~--~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~~l~ 238 (500)
T 3czp_A 176 ----WKL----------SPLDW--KQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAALA 238 (500)
T ss_dssp -----------------CSSCT--TSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCC----------CHHHH--HHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHHHHH
Confidence 000 00111 1123456666666666554432 22378899998 3 6677777777776664
No 130
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.14 E-value=2.2e-06 Score=67.68 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=36.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIA 47 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~ 47 (228)
++|.|+|++||||||+|+.|++.+|+++++.++.+++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 5799999999999999999999999999999888877654
No 131
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.93 E-value=3.6e-05 Score=61.68 Aligned_cols=163 Identities=11% Similarity=0.099 Sum_probs=94.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhcc---
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDL--- 82 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 82 (228)
.+.+|+|.|..||||.++.++|.+.++-.++.+-.+ ..|... +.....+-......
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~-------~~Pt~e--------------E~~~~ylwR~~~~lP~~ 132 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAF-------KAPTDE--------------EKSHDFLWRIEKQVPAA 132 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC-------CSCCHH--------------HHTSCTTHHHHTTCCCT
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEEC-------CCCChh--------------hhcCCHHHHHHHhCCCC
Confidence 477899999999999999999999996544443111 011100 00000001111111
Q ss_pred CCceEEcC--CCC----------C-------HHHHHHHHhc---CCCCCEEEEEEeCHHHHHHHHhcCccCCCCCccccc
Q psy6801 83 KCNYLLDG--FPR----------T-------YDQAMALFKN---HLSPNCVMHINVPKEVIIDRLSKRWIHPASGRVYNL 140 (228)
Q Consensus 83 ~~~~ildg--~p~----------~-------~~~~~~l~~~---~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~ 140 (228)
++..|+|+ |.+ + ..++..|+.. ....-+.+||+++.++-.+|+..|..++..-
T Consensus 133 G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~----- 207 (289)
T 3rhf_A 133 GMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKH----- 207 (289)
T ss_dssp TCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGG-----
T ss_pred CeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCccc-----
Confidence 66666664 111 1 2233344432 1223457999999999999999995433211
Q ss_pred CCCCCCCCCCCcccccccccCCCCcHHHHH--HHHHHHHhcHHHHHHHhhh-CCcEEEEeCCCC----cchHHHHHHHHh
Q psy6801 141 DFNAPKKPGIDDITGEKLIQRDDDKPEAIK--KRLETFDQTIKPLLDYYDN-REVLDTFTGNTT----DEIWPRIYEHLN 213 (228)
Q Consensus 141 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~~~~~~~~~~~~-~~~~i~id~~~~----e~v~~~i~~~l~ 213 (228)
=.-++..+. ++...|...+..++..-+. ..-.++|++++. -.|.+.|.+.|+
T Consensus 208 ---------------------WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le 266 (289)
T 3rhf_A 208 ---------------------WKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALG 266 (289)
T ss_dssp ---------------------GGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ---------------------ccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 112233333 3578888888887776543 233789999986 236666777776
Q ss_pred hc
Q psy6801 214 IR 215 (228)
Q Consensus 214 ~~ 215 (228)
..
T Consensus 267 ~~ 268 (289)
T 3rhf_A 267 GL 268 (289)
T ss_dssp TT
T ss_pred Hc
Confidence 64
No 132
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.91 E-value=6.5e-06 Score=66.88 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=28.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
.|..+++.||||+|||++|+.+++.++.+++.+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 345688899999999999999999998876544
No 133
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.89 E-value=7e-06 Score=69.24 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGD 40 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d 40 (228)
++|+|.||+||||||++..|++.++..+|++|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 478999999999999999999999998898865
No 134
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=1.3e-05 Score=68.55 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=28.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-|++.||||+|||++|+.+|.+++.+++.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45699999999999999999999999987654
No 135
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=1.5e-05 Score=67.32 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=28.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-|++.||||+|||++|+.+|.+++.+++.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 44599999999999999999999999988754
No 136
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=1.6e-05 Score=67.86 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=28.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-|++.||||+|||++|+.+|..++++++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 34499999999999999999999999987754
No 137
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=1.6e-05 Score=67.99 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=28.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-|+++||||+|||++|+.+|..++++++.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 44699999999999999999999999987654
No 138
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.74 E-value=2.1e-05 Score=62.28 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=27.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+.-++|.||||+||||+++.++..++.+++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 44689999999999999999999998766644
No 139
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.74 E-value=1.4e-05 Score=69.73 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=30.0
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc-------ceeehhH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV-------KHIATGD 40 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~-------~~i~~~d 40 (228)
.++.|+|+|++||||||+++.|+++++. .+++.|+
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 3468999999999999999999999986 5677655
No 140
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.73 E-value=1.9e-05 Score=64.51 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=29.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC-------cceeehhHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN-------VKHIATGDI 41 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~-------~~~i~~~d~ 41 (228)
.+.+|+|.|++||||||+++.|+..++ +.++++|+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 346899999999999999999999876 566666654
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.72 E-value=3.5e-05 Score=57.63 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=28.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh----C--cceeehhHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF----N--VKHIATGDILR 43 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~----~--~~~i~~~d~~~ 43 (228)
+..++|.||+||||||+++.++..+ | +.+++..+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~ 80 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF 80 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 4579999999999999999998876 3 34566656543
No 142
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.72 E-value=2e-05 Score=60.05 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=28.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGD 40 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d 40 (228)
+..|+|.||+||||||+|..|+++.+ .+++.|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 45799999999999999999999977 7777644
No 143
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.70 E-value=2.8e-05 Score=61.54 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=27.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+.-++|.||||+|||++|+.+++.++.+++.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 34589999999999999999999998876643
No 144
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=2.4e-05 Score=67.03 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=28.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-|++.||||+|||++|+.+|.+++.+++.+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 45699999999999999999999999988754
No 145
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=3e-05 Score=65.84 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=28.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.=|++.||||+|||++|+.+|.+++++++.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 44599999999999999999999999988754
No 146
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.67 E-value=6.6e-06 Score=68.29 Aligned_cols=28 Identities=32% Similarity=0.629 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcce
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKH 35 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~ 35 (228)
+.|+|+|++||||||+++.|++.++.++
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3599999999999999999999999877
No 147
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.67 E-value=2.8e-05 Score=58.45 Aligned_cols=27 Identities=33% Similarity=0.767 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVK 34 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~ 34 (228)
++++|.||+||||||+.+.|+..+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 468999999999999999999988643
No 148
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.67 E-value=3.4e-05 Score=66.06 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=29.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATG 39 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~ 39 (228)
+..|+++||||+||||+|+.|++.++.+++.++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 457999999999999999999999999887653
No 149
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.66 E-value=2.5e-05 Score=63.38 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=30.0
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC-------ccee-ehhHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN-------VKHI-ATGDIL 42 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~-------~~~i-~~~d~~ 42 (228)
.+.+|+|.|++||||||+++.|+..++ ...+ +.|+++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 467899999999999999999998885 3345 777654
No 150
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.66 E-value=3.2e-05 Score=62.94 Aligned_cols=38 Identities=24% Similarity=0.512 Sum_probs=30.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh--hHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT--GDILRS 44 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~--~d~~~~ 44 (228)
+.-|+|.||||+|||++|+.++..++.+++.+ .++...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 34699999999999999999999998877654 344433
No 151
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.64 E-value=0.00023 Score=57.77 Aligned_cols=157 Identities=15% Similarity=0.240 Sum_probs=82.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhC--cce-eehhHHHHHHHh---ccCh-----hhHHHHHHHHCCCCCChH-----
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFN--VKH-IATGDILRSHIA---QNTT-----LGLKAKEYMNKGLLVPDD----- 69 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~--~~~-i~~~d~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~----- 69 (228)
.+..|+|+|| ||+|+.+.|.+.+. +.+ ++. .-|..-. .+.+ ..+.+...+..|..+.-.
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~--TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~ 178 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPH--TTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH 178 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCE--ECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCEEEEECC---CHHHHHHHHHhhCccceeeeeee--cccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCc
Confidence 4467899998 79999999998763 211 111 0000000 0000 112333444444322110
Q ss_pred ---HHHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeC-HHHHHHHHhcCccCCCCCcccccCCCCC
Q psy6801 70 ---LMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVP-KEVIIDRLSKRWIHPASGRVYNLDFNAP 145 (228)
Q Consensus 70 ---~~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~g~~~~~~~~~p 145 (228)
.....+.+.+.. ++.+|+|.-+.... .+......| .+||+..| .+++.+ +.+|.
T Consensus 179 ~YGt~~~~V~~~~~~-G~~vildid~~g~~---~l~~~~~~p-i~IfI~pps~~~L~~-L~~R~---------------- 236 (295)
T 1kjw_A 179 LYGTSVQSVREVAEQ-GKHCILDVSANAVR---RLQAAHLHP-IAIFIRPRSLENVLE-INKRI---------------- 236 (295)
T ss_dssp EEEEEHHHHHHHHHT-TCEEEECCCTTHHH---HHHHTTCCC-EEEEECCSSHHHHHH-HCTTS----------------
T ss_pred EeeeeHHHHHHHHhc-CCeEEEEeCHHHHH---HHHhcccCC-eEEEEECCCHHHHHH-HHhcC----------------
Confidence 112334444555 88899997544333 333333456 88999877 455555 76661
Q ss_pred CCCCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhh-hCCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 146 KKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYD-NREVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~-~~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
.++.+++++.+..+ +...+. ..+. +|.++ + ++.++.|.+.|...
T Consensus 237 -------------------t~~~i~~rl~~a~~----~e~~~~~~fd~--vivNd-~le~a~~~l~~ii~~~ 282 (295)
T 1kjw_A 237 -------------------TEEQARKAFDRATK----LEQEFTECFSA--IVEGD-SFEEIYHKVKRVIEDL 282 (295)
T ss_dssp -------------------CHHHHHHHHHHHHH----HHHHHGGGCSE--EECCS-SHHHHHHHHHHHHHHH
T ss_pred -------------------CHHHHHHHHHHHHH----HHHhccccCeE--EEECc-CHHHHHHHHHHHHHhc
Confidence 12456667766532 112222 2223 34443 6 88999999988754
No 152
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.64 E-value=8.8e-05 Score=67.95 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=28.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-|++.||||+|||++|+.+|.+++.+++.+
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 45699999999999999999999999987754
No 153
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.64 E-value=3.7e-05 Score=61.72 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=27.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+.-++|.||||+|||++++.+++.++.+++.+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 44699999999999999999999998877643
No 154
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.64 E-value=3.6e-05 Score=62.18 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=27.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+.-++|.||||+||||+++.+++.++.+++.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 45799999999999999999999998776543
No 155
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.63 E-value=3.5e-05 Score=64.28 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=28.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+..|+|.||||+|||++|+.|++.++.+++.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 45699999999999999999999999887755
No 156
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.62 E-value=3.7e-05 Score=61.80 Aligned_cols=29 Identities=24% Similarity=0.647 Sum_probs=25.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
-++|.|||||||||+++.|+..++...+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 38999999999999999999998875554
No 157
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.59 E-value=4.6e-05 Score=60.89 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=28.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+..++|.||||+|||++|+.+++..+.+++.+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 45699999999999999999999998877654
No 158
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.58 E-value=4.9e-05 Score=62.41 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=27.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+.-|+|.||||+|||++|+.+++..+.+++.+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 34599999999999999999999998877654
No 159
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.54 E-value=5.6e-05 Score=56.57 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+++.++|.|++||||||+++.|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998765
No 160
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.53 E-value=6.3e-05 Score=60.87 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=27.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
+.-++|.||||+|||++++.+++.++.+++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4569999999999999999999999876653
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.51 E-value=6.3e-05 Score=59.41 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=25.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
-++|+|||||||||+++.++..++..++.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 489999999999999999999987665544
No 162
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.51 E-value=3.1e-05 Score=61.65 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=27.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+.-++|.||||+|||++|+.+++.++.+++.+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 34488999999999999999999998876654
No 163
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.50 E-value=6.6e-05 Score=62.91 Aligned_cols=31 Identities=19% Similarity=0.475 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
..++|+||||+|||++|+.|++.++.+++.+
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 4699999999999999999999998877654
No 164
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.50 E-value=7.3e-05 Score=61.46 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh-Ccceee
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF-NVKHIA 37 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~-~~~~i~ 37 (228)
.-|+|.||||+|||++|+.+++.+ +.+++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 469999999999999999999998 665543
No 165
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.50 E-value=0.0002 Score=65.63 Aligned_cols=115 Identities=21% Similarity=0.323 Sum_probs=60.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh--hHHHHHHHhccChhhHHHHHHHHC----------------------
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT--GDILRSHIAQNTTLGLKAKEYMNK---------------------- 62 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~--~d~~~~~~~~~~~~~~~~~~~~~~---------------------- 62 (228)
+.-|++.||||+|||.+|+.+|.+.+.+++++ .+++.+.+. +..+.++..+..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vG---ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~ 587 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG---ESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCS---SCHHHHHHHHHHHHTTCSEEEECSCGGGCC----
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccc---hHHHHHHHHHHHHHHcCCceeechhhhHHhhccC
Confidence 44699999999999999999999999988755 233322111 111222222210
Q ss_pred -----CCCCChHHHHHHHHHHHhcc--CCceEEc---CCCCCHHHHHHHHhcCCCCCEEEEEEeCHHHHHHHHhcC
Q psy6801 63 -----GLLVPDDLMIDLVKNEVKDL--KCNYLLD---GFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128 (228)
Q Consensus 63 -----~~~~~~~~~~~~~~~~l~~~--~~~~ild---g~p~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 128 (228)
+.... ..+...+...+... ..++++= +.|...+.+- .. ..-+|..||+..|+...+..+-+.
T Consensus 588 ~~~~~~~~~~-~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~Al--lR-pgRfd~~i~v~lPd~~~R~~il~~ 659 (806)
T 3cf2_A 588 GNIGDGGGAA-DRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI--LR-PGRLDQLIYIPLPDEKSRVAILKA 659 (806)
T ss_dssp -----------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHH--HS-TTTSCCEEEC-----CHHHHTTTT
T ss_pred CCCCCCchHH-HHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhH--cC-CCcceEEEEECCcCHHHHHHHHHH
Confidence 00001 12333444455544 3444442 3665554432 21 134788999999988777666655
No 166
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.49 E-value=7.1e-05 Score=55.69 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
++++.|.|++||||||++.+|+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 5679999999999999999998875
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.48 E-value=9e-05 Score=55.14 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+..++|.|++|+|||++++.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999987
No 168
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.48 E-value=7.9e-05 Score=62.11 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
.-|+|+||||+|||++|+.+++.++.+++.+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3589999999999999999999999877654
No 169
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.47 E-value=8.1e-05 Score=61.45 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcce
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKH 35 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~ 35 (228)
..++|+||||+||||+++.++..++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 5689999999999999999999987644
No 170
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.46 E-value=0.00014 Score=55.19 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh---Cc--ceeehhHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF---NV--KHIATGDILR 43 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~---~~--~~i~~~d~~~ 43 (228)
..++|.|++|+||||+++.++..+ +. .+++..+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 569999999999999999999877 33 3466655543
No 171
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.42 E-value=8.3e-05 Score=55.21 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999987
No 172
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.42 E-value=0.00011 Score=61.33 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=27.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+.-|+|.||||+|||++|+.+++.++.+++.+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 45699999999999999999999998876543
No 173
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.40 E-value=0.00011 Score=59.00 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=25.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
-++|+||+||||||+++.|+..++..++.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 389999999999999999999987665544
No 174
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.39 E-value=0.00011 Score=63.21 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhC--cceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFN--VKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~--~~~i~~ 38 (228)
.-++|.||||+|||++|+.+++.++ .+++.+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 4699999999999999999999998 666654
No 175
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.38 E-value=8.2e-05 Score=56.99 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=25.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
.++|.||||+||||+|..|++.+.-.+++
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 59999999999999999999988654444
No 176
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.36 E-value=0.00011 Score=56.78 Aligned_cols=26 Identities=35% Similarity=0.715 Sum_probs=23.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+.+++|+||+||||||+++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34589999999999999999998876
No 177
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.35 E-value=0.00015 Score=62.80 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=28.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
|.-|+|.||||+||||+++.++...+.+++.+
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 44599999999999999999999999887654
No 178
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.33 E-value=5.8e-05 Score=56.34 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
+.+++|.|++||||||+++.|...+.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999988763
No 179
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.33 E-value=0.00013 Score=59.23 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.++|.||||+|||++|+.+++.+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999999988
No 180
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.33 E-value=0.00013 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-|+|.|+||+|||++|+.+++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998875
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.32 E-value=0.00014 Score=56.34 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=26.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC-----cceeehhH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN-----VKHIATGD 40 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~-----~~~i~~~d 40 (228)
+..++|.||||+||||+++.+++.+. +.+++..+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45799999999999999999998874 34555544
No 182
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.32 E-value=0.00013 Score=59.66 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+.+|+|.|++||||||+++.|+..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 45689999999999999999998876
No 183
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.31 E-value=0.00017 Score=59.34 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
..|+|.|+||+|||++|+.+++.++.+++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 4689999999999999999999998876654
No 184
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.30 E-value=0.00017 Score=60.72 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=28.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+.-|+|.||||+|||++|+.+++.++.+++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 35699999999999999999999998877654
No 185
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.30 E-value=0.00017 Score=63.18 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=28.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+..++|.||||+||||+|+.+++.++..++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 35799999999999999999999998877654
No 186
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.29 E-value=0.00027 Score=60.45 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=23.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
|.+|+|.|++||||||++..|+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
No 187
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.29 E-value=0.00017 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=22.0
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...+++++|++||||||++..++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999997777665
No 188
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.26 E-value=0.00018 Score=55.10 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
+.+++|.||+||||||+++.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999988763
No 189
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.25 E-value=0.00022 Score=59.85 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=27.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
+..++|.||+||||||+++.|+..++..++.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 4579999999999999999999988776555
No 190
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.25 E-value=0.00015 Score=54.38 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=21.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCcc
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHFNVK 34 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~~~~ 34 (228)
++|+|++||||||+|..|+.. +.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCC
Confidence 789999999999999999987 654
No 191
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.24 E-value=0.00016 Score=53.20 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.0
Q ss_pred ccccceEEEEcCCCCChHHHHHHHHH
Q psy6801 4 TLLMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 4 ~~~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.|...+|+|.|++||||||+.++|..
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHc
Confidence 34557899999999999999999974
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.23 E-value=0.00021 Score=61.32 Aligned_cols=35 Identities=20% Similarity=0.480 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh-Cccee--ehhHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF-NVKHI--ATGDIL 42 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~-~~~~i--~~~d~~ 42 (228)
.-|+|.||||+|||++|+.++..+ +.+++ +..+++
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 469999999999999999999998 66554 444443
No 193
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.23 E-value=0.00018 Score=52.32 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=22.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...++|.|++||||||+++.++..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998876
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.22 E-value=0.00024 Score=58.15 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh---Cc--ceeehhHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF---NV--KHIATGDIL 42 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~---~~--~~i~~~d~~ 42 (228)
.-++|+||||+||||+++.+++.+ +. .+++..++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 469999999999999999999987 44 456665553
No 195
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.21 E-value=0.00022 Score=61.25 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=26.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
.++|+||||+||||+++.+++.++..++.+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 589999999999999999999998876654
No 196
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.17 E-value=0.00025 Score=54.61 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
..++|.|++|+||||+++.+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46899999999999999999988743
No 197
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.16 E-value=0.00024 Score=52.08 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|.|++|+||||+.++|..
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999975
No 198
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.16 E-value=0.00026 Score=54.07 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=20.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
|++++|+|+||||||++|..+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458899999999999999886433
No 199
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.16 E-value=0.00025 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=21.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.+.+|++.|.+||||||+.+.|...
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Confidence 4468999999999999999999754
No 200
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.0036 Score=50.84 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=51.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcce-eehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCceE
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKH-IATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNYL 87 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 87 (228)
-|+|+|| ||+|+.++|.+.+.-.+ ++.. + . . .+..+..++...+. +.+.. ++.+|
T Consensus 147 PvVl~GP---~k~~l~~~L~~~~P~~F~~~v~--~----~------r----~i~~~~fis~~~V~----~vl~~-Gk~~I 202 (308)
T 3kfv_A 147 PVVILGP---VADIAMQKLTAEMPDQFEIAET--V----S------R----TDSPSKIIKLDTVR----VIAEK-DKHAL 202 (308)
T ss_dssp CEEEEST---THHHHHHHHHHHCTTTEEECCC--C----------------------CCCHHHHH----HHHHT-TCEEE
T ss_pred eEEEeCc---cHHHHHHHHHHhCccccccccc--c----c------c----cccCCCeecHHHHH----HHHHC-CCcEE
Confidence 3899999 79999999988874322 2211 0 0 0 13445556544444 44444 99999
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCEEEEEEeCH-HHHHHHHhcC
Q psy6801 88 LDGFPRTYDQAMALFKNHLSPNCVMHINVPK-EVIIDRLSKR 128 (228)
Q Consensus 88 ldg~p~~~~~~~~l~~~~~~~~~vi~l~~~~-e~~~~R~~~R 128 (228)
+|--+. -++.+......| .+||+..|. +++.+| ..|
T Consensus 203 LDId~Q---Ga~~lk~~~~~p-i~IFI~PPS~eeL~~r-r~R 239 (308)
T 3kfv_A 203 LDVTPS---AIERLNYVQYYP-IVVFFIPESRPALKAL-RQW 239 (308)
T ss_dssp ECCCHH---HHHHHHHTTCCC-EEEEEEESCHHHHHHH-HHH
T ss_pred EEECHH---HHHHHHhcCCCC-EEEEEeCCCHHHHHHH-Hhc
Confidence 987433 334444444556 677777665 566654 444
No 201
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.14 E-value=0.00026 Score=57.66 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCccee
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHI 36 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i 36 (228)
..++|.|++|+|||++|+.+++.++.+++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46899999999999999999999987664
No 202
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.13 E-value=0.00028 Score=51.09 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
|...+|+|.|++||||||+..+|...
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcC
Confidence 34568999999999999999988753
No 203
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.13 E-value=0.0002 Score=58.79 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCccee
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHI 36 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i 36 (228)
.-++|.||||+|||++++.+++.++.+++
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 35899999999999999999999987654
No 204
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.13 E-value=8.7e-05 Score=53.48 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCccee
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHI 36 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i 36 (228)
.-|+|.|+||+|||++|+.+++..+ +++
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~-~~~ 55 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT-PWV 55 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence 3589999999999999999988776 443
No 205
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.12 E-value=0.00028 Score=53.70 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.++|.|++|+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999876
No 206
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.11 E-value=0.012 Score=53.58 Aligned_cols=160 Identities=14% Similarity=0.211 Sum_probs=82.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc-ceeehhHHHHHHHh---ccCh-----hhHHHHHHHHCCCCCCh-----H--
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV-KHIATGDILRSHIA---QNTT-----LGLKAKEYMNKGLLVPD-----D-- 69 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~-~~i~~~d~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~-----~-- 69 (228)
.+..|+|+|| ||+|+.++|.+.+.- ..++....-|..-. .+.+ ..+.+...+..|..+.- .
T Consensus 530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~Y 606 (721)
T 2xkx_A 530 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLY 606 (721)
T ss_pred CCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccc
Confidence 3456899999 499999999987631 11221111111000 0000 12233344444432211 0
Q ss_pred -HHHHHHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCH-HHHHHHHhcCccCCCCCcccccCCCCCCC
Q psy6801 70 -LMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPK-EVIIDRLSKRWIHPASGRVYNLDFNAPKK 147 (228)
Q Consensus 70 -~~~~~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~-e~~~~R~~~R~~~~~~g~~~~~~~~~p~~ 147 (228)
.-...+.+.+.. ++.+|+|.-+ .-+..+......| ++||+..|. +++.+ +..|.
T Consensus 607 Gt~~~~v~~~~~~-g~~~ildi~~---~~~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~------------------ 662 (721)
T 2xkx_A 607 GTSVQSVREVAEQ-GKHCILDVSA---NAVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRI------------------ 662 (721)
T ss_pred eeeHHHHHHHHHC-CCcEEEeCCH---HHHHHHHhcccCC-EEEEEeCCcHHHHHH-HhccC------------------
Confidence 122334555555 8899999743 2333344333456 889998775 55544 77761
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHhcHHHHHHHhhhCCcEEEEeCCCC-cchHHHHHHHHhhc
Q psy6801 148 PGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNIR 215 (228)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~id~~~~-e~v~~~i~~~l~~~ 215 (228)
.++.+++++.+..+ ++..|...-.. +|+++ + ++.+++|.+.|...
T Consensus 663 -----------------t~~~~~~rl~~a~~----~e~~~~~~fd~-vi~Nd-~l~~a~~~l~~~i~~~ 708 (721)
T 2xkx_A 663 -----------------TEEQARKAFDRATK----LEQEFTECFSA-IVEGD-SFEEIYHKVKRVIEDL 708 (721)
T ss_pred -----------------CHHHHHHHHHHHHH----HHHhccccCcE-EEECc-CHHHHHHHHHHHHHhc
Confidence 12345666655532 12222221112 34443 6 88999999988753
No 207
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.10 E-value=0.00033 Score=53.06 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 208
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.09 E-value=0.00036 Score=61.41 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=26.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceee
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIA 37 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~ 37 (228)
+..++|.||||+||||+++.++..++.+++.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 4579999999999999999999999776543
No 209
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.09 E-value=0.00032 Score=58.26 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
..++|.||||+|||++|+.+++.++.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46999999999999999999999874
No 210
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.08 E-value=0.00036 Score=51.26 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.||.||||||+.+.|+..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3479999999999999999999876
No 211
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.08 E-value=0.00029 Score=55.10 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.1
Q ss_pred cceEEEEcCCCCChHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRII 28 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~ 28 (228)
+-.++|.||+||||||+++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4589999999999999999887
No 212
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.07 E-value=0.00041 Score=60.37 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=27.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+.-++|+||||+||||+++.++...+.+++.+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34489999999999999999999988766543
No 213
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.06 E-value=0.00029 Score=54.33 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.||+||||||+++.|+-.+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998743
No 214
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.06 E-value=0.00038 Score=51.84 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.0
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
|...+|+|.|++|+||||+.++|...
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55678999999999999999999763
No 215
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.06 E-value=0.00032 Score=58.31 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+..++|.||||+||||+++.+++.+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999987
No 216
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00027 Score=57.95 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=23.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+..++|.||||+|||++++.+++.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999999988
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.05 E-value=0.00041 Score=60.29 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=27.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+.-|+|.||||+|||++|+.+++.++.+++.+
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34599999999999999999999998877644
No 218
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.04 E-value=0.00038 Score=51.21 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+...+|+|.|.+||||||+.++|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999764
No 219
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.03 E-value=0.0004 Score=50.39 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
|...+|+|.|.+||||||+.++|..
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Confidence 3456899999999999999999975
No 220
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.03 E-value=0.00041 Score=55.29 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...++|.||+||||||+.+.|+..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 3479999999999999999998765
No 221
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.02 E-value=0.00045 Score=57.57 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+..++|.||+|+||||+++.+++.+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999987
No 222
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.02 E-value=0.00043 Score=50.17 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=22.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
|...+|+|.|.+||||||+.++|...
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 44568999999999999999999753
No 223
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.01 E-value=0.00043 Score=49.98 Aligned_cols=23 Identities=35% Similarity=0.723 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
++|++.|++||||||+.++|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 224
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.01 E-value=0.00042 Score=56.45 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|+|.||+||||||+++.|+..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 5589999999999999999998776
No 225
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.01 E-value=0.00042 Score=56.62 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=27.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+..+++.||||+|||++++.+++.++..++.+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 44578888899999999999999998877654
No 226
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.01 E-value=0.00043 Score=56.47 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=22.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|+|+|++||||||++..|+..+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 4579999999999999999999876
No 227
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.00 E-value=0.00043 Score=51.23 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+...+|+|+|.+||||||+.++|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 45678999999999999999999753
No 228
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.00 E-value=0.00046 Score=50.69 Aligned_cols=28 Identities=21% Similarity=0.528 Sum_probs=23.0
Q ss_pred CcccccceEEEEcCCCCChHHHHHHHHH
Q psy6801 2 LNTLLMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 2 ~~~~~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.......+|+|.|++||||||+.++|..
T Consensus 2 ~~~~~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 2 AGKSSLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp CCCEEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccceeEEEEECCCCCCHHHHHHHHHc
Confidence 3334557899999999999999999964
No 229
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.98 E-value=0.0005 Score=57.03 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=26.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh------Ccceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF------NVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~------~~~~i~~ 38 (228)
+..++|.|++|+||||+++.+++.+ +..++.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 4579999999999999999999987 6655443
No 230
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.97 E-value=0.00056 Score=56.98 Aligned_cols=23 Identities=26% Similarity=0.664 Sum_probs=22.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.++|.||+|+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999988
No 231
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.97 E-value=0.00043 Score=56.07 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=21.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.++|.||||+||||+|+.|++.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 232
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.96 E-value=0.0005 Score=55.97 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.||+||||||+++.|+.-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4579999999999999999998877
No 233
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.96 E-value=0.00036 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.155 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...++|.||.||||||+.+.|+--+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4578999999999999999997544
No 234
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.94 E-value=0.00065 Score=55.43 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=28.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC----c--ceeehhHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN----V--KHIATGDILRS 44 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~----~--~~i~~~d~~~~ 44 (228)
...++|.||||+|||+++..++..+. . .+++..+++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 35689999999999999999988654 3 34666665543
No 235
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.94 E-value=0.00059 Score=50.75 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
.-|+|.|++|+||||+|..|.++ |..+++-
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~lvaD 46 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQLVCD 46 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEEEES
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEecC
Confidence 45899999999999999999885 7666654
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.94 E-value=0.00052 Score=56.50 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=23.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+.+|+|.||+||||||+++.|+..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998876
No 237
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.94 E-value=0.00052 Score=59.27 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..++|+|+||+|||++++.|++.+
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999997
No 238
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.93 E-value=0.00055 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+..++|.|++||||||+++.++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998554
No 239
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.93 E-value=0.00055 Score=55.70 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+++.|+..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998876
No 240
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.91 E-value=0.00045 Score=53.10 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+++|.||.||||||+.+.|+-.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999998753
No 241
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.91 E-value=0.00058 Score=49.62 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=21.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|.|++||||||+.++|...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999998643
No 242
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.90 E-value=0.00051 Score=54.01 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
-+++|.||.||||||+.+.|+--+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999997654
No 243
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.90 E-value=0.00057 Score=50.97 Aligned_cols=26 Identities=31% Similarity=0.626 Sum_probs=22.8
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
|...+|+|+|.+||||||+...|...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 55678999999999999999999754
No 244
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.89 E-value=0.00059 Score=52.22 Aligned_cols=32 Identities=19% Similarity=0.099 Sum_probs=24.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC--cceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN--VKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~--~~~i~~ 38 (228)
..+++|.|++||||||++..++..-+ +.+++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 45899999999999999999986333 334554
No 245
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.89 E-value=0.00042 Score=53.90 Aligned_cols=25 Identities=32% Similarity=0.143 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.||.||||||+.+.|+--+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999997544
No 246
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.87 E-value=0.00053 Score=63.19 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=28.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+..|+|+|||||||||+++.|+..++.+++.+
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 45699999999999999999999998876654
No 247
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.87 E-value=0.00064 Score=53.90 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
.-|+|+|+||+|||++|+.+++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999999999999999998864
No 248
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.86 E-value=0.00054 Score=57.18 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=24.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcc
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVK 34 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~ 34 (228)
..+++|+|++||||||+++.|+..++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4589999999999999999999988653
No 249
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.85 E-value=0.00063 Score=51.16 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.+|+|.|++||||||+.++|+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 58999999999999999999764
No 250
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.85 E-value=0.00062 Score=56.12 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
++|.||+|+||||+++.+++.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 251
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.85 E-value=0.00068 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|+|.|++||||||++..|+..+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998765
No 252
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.83 E-value=0.00053 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.||.||||||+.+.|+-.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999997654
No 253
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.83 E-value=0.00067 Score=51.22 Aligned_cols=24 Identities=38% Similarity=0.711 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|.|++||||||+.++|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999999764
No 254
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.82 E-value=0.00081 Score=52.24 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=22.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++++|++||||||.+..++.++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4589999999999999999888877
No 255
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.82 E-value=0.00067 Score=55.81 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
.++|.||||+||||+++.+++.++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998864
No 256
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.82 E-value=0.00053 Score=55.07 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+-+++|.||.||||||+.+.|+--+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999997654
No 257
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.82 E-value=0.00086 Score=57.45 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=27.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----Cc--ceeehhHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NV--KHIATGDI 41 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~--~~i~~~d~ 41 (228)
+.-++|+||||+||||+++.++..+ +. .+++..++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 3468999999999999999999877 44 34565554
No 258
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.82 E-value=0.00065 Score=54.18 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=22.3
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
|...+|+|.|++||||||+.+.|...
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999654
No 259
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.82 E-value=0.00077 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|.|++||||||+.++|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999753
No 260
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.80 E-value=0.00055 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|.||.||||||+.+.|+--+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4578999999999999999997544
No 261
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.80 E-value=0.002 Score=55.49 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=51.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCCCCChHHHHHHHHHHHhccCCce
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNY 86 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (228)
+..|+|+||+|+| +.++|.+.+.-.+.+.. -|. .++..-|. . ...++ ...+++.+.. ++.+
T Consensus 224 ~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~--TRp--R~gE~dG~---~----Y~FTs----~~~V~~vl~~-Gk~~ 284 (468)
T 3shw_A 224 LRPVTIFGPIADV---AREKLAREEPDIYQIAK--SEP--RDAGTDQR---S----SGIIR----LHTIKQIIDQ-DKHA 284 (468)
T ss_dssp CCCEEEESTTHHH---HHHHHHHHCTTTEEECC--CBC-------------------CBCC----HHHHHHHHTT-TCEE
T ss_pred CCEEEEECCCHHH---HHHHHHHhCCCceeeec--CCC--CCcccccc---c----CCccc----HHHHHHHHHC-CCeE
Confidence 4568999999999 88888887743333321 110 00000000 0 01122 3444555555 9999
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCH-HHHHH
Q psy6801 87 LLDGFPRTYDQAMALFKNHLSPNCVMHINVPK-EVIID 123 (228)
Q Consensus 87 ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~-e~~~~ 123 (228)
|||--+. -++.+......| ++||+..|. +++.+
T Consensus 285 iLdId~q---g~~~l~~~~~~p-~~IFI~PPS~e~L~~ 318 (468)
T 3shw_A 285 LLDVTPN---AVDRLNYAQWYP-IVVFLNPDSKQGVKT 318 (468)
T ss_dssp EECCCHH---HHHHHHHTTCCC-EEEEEECSCHHHHHH
T ss_pred EEEeCHH---HHHHHHhcCCCC-EEEEEeCcCHHHHHH
Confidence 9997433 344555444556 778887766 44544
No 262
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.80 E-value=0.00076 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=21.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|.|++|+||||+.++|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 356899999999999999999864
No 263
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.80 E-value=0.00081 Score=51.55 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+++|+|.|.+||||||++.+|+..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 264
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.79 E-value=0.00046 Score=56.82 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=22.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
-++|+|+||+|||++|+.+++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 499999999999999999999886
No 265
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.79 E-value=0.0008 Score=49.50 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=21.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|+|++||||||+.++|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999998653
No 266
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.79 E-value=0.00057 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.||.||||||+.+.|+-.+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999997654
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.78 E-value=0.00059 Score=54.38 Aligned_cols=25 Identities=32% Similarity=0.161 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.||.||||||+.+.|+--+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999997654
No 268
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.78 E-value=0.00088 Score=49.52 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.1
Q ss_pred cccceEEEEcCCCCChHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
|...+|+|.|.+|+||||+..+|..
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHc
Confidence 4567899999999999999999864
No 269
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.78 E-value=0.00074 Score=53.38 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+++|.|+.||||||+.+.|+--
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 270
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.78 E-value=0.0008 Score=52.30 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...++|.|++||||||++..|+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999999874
No 271
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.77 E-value=0.00061 Score=53.78 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+--+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999997654
No 272
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.77 E-value=0.00085 Score=55.89 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|+|.|+.||||||+++.|+..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 5589999999999999999998876
No 273
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.76 E-value=0.00063 Score=53.55 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.||.||||||+.+.|+-.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999997654
No 274
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.75 E-value=0.00065 Score=53.37 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.||.||||||+.+.|+--+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999997654
No 275
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.75 E-value=0.001 Score=48.42 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|.|.+|+||||+.++|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999954
No 276
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.75 E-value=0.00089 Score=51.01 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=21.1
Q ss_pred CCcccccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 1 m~~~~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
|.......+|+|.|.+|+||||+..+|...
T Consensus 1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -------CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 333345678999999999999999999754
No 277
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.75 E-value=0.00093 Score=48.54 Aligned_cols=26 Identities=35% Similarity=0.623 Sum_probs=22.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+...+|+|.|++|+||||+.++|...
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 44578999999999999999999654
No 278
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.75 E-value=0.00065 Score=53.92 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.||.||||||+.+.|+--+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999997654
No 279
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.74 E-value=0.001 Score=48.79 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=22.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+...+|+|.|++||||||+.++|...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 44578999999999999999999753
No 280
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.74 E-value=0.00067 Score=54.11 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.||.||||||+.+.|+--+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3478999999999999999997654
No 281
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.73 E-value=0.00092 Score=50.09 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|+|.+|+||||+.++|...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999998764
No 282
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.73 E-value=0.00083 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+-+++|.||.||||||+.+.|+--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999774
No 283
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.73 E-value=0.001 Score=51.21 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+.+|+|.|.+||||||++.+|+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998875
No 284
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.73 E-value=0.0007 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.||.||||||+.+.|+-.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999997654
No 285
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.72 E-value=0.00079 Score=55.54 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q psy6801 10 AVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
++|.||+|+||||+++.|+..+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999965
No 286
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.71 E-value=0.00081 Score=57.39 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=22.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
|.+|++.|++||||||++..|+..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998776
No 287
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.001 Score=49.83 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.9
Q ss_pred cccceEEEEcCCCCChHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
....+|+|.|.+||||||+.++|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 3456899999999999999999975
No 288
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.71 E-value=0.00071 Score=54.16 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.||.||||||+.+.|+--+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999997655
No 289
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.71 E-value=0.00077 Score=50.21 Aligned_cols=22 Identities=32% Similarity=0.697 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.+|+|.|++|+||||+.++|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 290
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.70 E-value=0.00075 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.||.||||||+.+.|+--+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4579999999999999999997654
No 291
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.70 E-value=0.00074 Score=53.60 Aligned_cols=25 Identities=28% Similarity=0.177 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.||.||||||+.+.|+--+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999997654
No 292
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.69 E-value=0.00082 Score=49.48 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=22.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+...+|+|.|.+|+||||+.++|...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999763
No 293
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.68 E-value=0.0012 Score=49.33 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=21.9
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+...+|+|.|.+|+||||+.+++...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999888653
No 294
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.68 E-value=0.001 Score=51.70 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=24.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----Ccceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~ 38 (228)
.-.++|.|+|||||||++..++... ++.+++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4578999999999999998886653 3445555
No 295
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.67 E-value=0.0013 Score=48.20 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|.|++||||||+.++|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999965
No 296
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.67 E-value=0.00081 Score=55.06 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+.++++|.|+.||||||+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3468999999999999999999854
No 297
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.001 Score=54.00 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
.++|.||||+||||+++.+++.+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 499999999999999999999863
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.67 E-value=0.0008 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.||.||||||+.+.|+-.+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578999999999999999997554
No 299
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.67 E-value=0.001 Score=53.60 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-.++|.|+|||||||+++.|+-.+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999887665
No 300
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.67 E-value=0.0011 Score=55.27 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
-.|+|+||+||||||+.+.|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 379999999999999999987765
No 301
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.67 E-value=0.0011 Score=48.11 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=21.9
Q ss_pred cccceEEEEcCCCCChHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
+...+|+|.|.+|+||||+.++|..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3456899999999999999999975
No 302
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.67 E-value=0.0011 Score=52.73 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
-|+|.||||+|||++|..|+..++.
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcc
Confidence 4999999999999999999997654
No 303
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.67 E-value=0.00091 Score=53.50 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..++|.|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998765
No 304
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=96.67 E-value=0.0028 Score=53.40 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=54.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeehhHHHHHHHhccChhhHHHHHHHHCCC---CCChHHHHHHHHHHHhccC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL---LVPDDLMIDLVKNEVKDLK 83 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~ 83 (228)
+..|+|+||+| +|+.++|.+.+.-.+.++ .+. ....+ .+|. .++ ...+.+.+.. +
T Consensus 232 ~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~--pR~gE---------~dG~~Y~Fv~----~~~V~~~~~~-G 289 (391)
T 3tsz_A 232 LRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSE--PRDAG---------TDQRSSGIIR----LHTIKQIIDQ-D 289 (391)
T ss_dssp CCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCC--CCCSS---------SCCC--CCCC----HHHHHHHHTT-T
T ss_pred CCEEEEECCCH---HHHHHHHHhhCccccccc---cCC--CCCcc---------cCCccCCcCc----HHHHHHHHHc-C
Confidence 45699999998 899999988875434332 111 00000 1111 222 3444555555 9
Q ss_pred CceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCH-HHHHHHHhcC
Q psy6801 84 CNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPK-EVIIDRLSKR 128 (228)
Q Consensus 84 ~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~-e~~~~R~~~R 128 (228)
+.+|+|--+. -++.+......| .+||+..|. +++.+| ..|
T Consensus 290 k~~iLdId~q---g~~~l~~~~~~p-~~IFI~PPS~~~L~~~-~~r 330 (391)
T 3tsz_A 290 KHALLDVTPN---AVDRLNYAQWYP-IVVFLNPDSKQGVKTM-RMR 330 (391)
T ss_dssp CEEEECCCHH---HHHHHHHTTCCC-EEEEEECCCHHHHHHH-HHH
T ss_pred CEEEEEeCHH---HHHHHHhCCCCC-EEEEEeCcCHHHHHHH-Hhc
Confidence 9999997433 344555444556 677777765 555554 444
No 305
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.66 E-value=0.0012 Score=54.77 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
..++|.||+|+||||+++.+++.++.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35899999999999999999998864
No 306
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.66 E-value=0.0012 Score=48.87 Aligned_cols=25 Identities=28% Similarity=0.658 Sum_probs=21.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|.|++||||||+.++|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999999998653
No 307
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.66 E-value=0.00081 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.||.||||||+.+.|+-.+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578999999999999999997654
No 308
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.66 E-value=0.0011 Score=60.67 Aligned_cols=31 Identities=26% Similarity=0.547 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh----------Ccceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF----------NVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~----------~~~~i~~ 38 (228)
.-++|+||||+|||++|+.|++.+ +..++..
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 468999999999999999999997 6666665
No 309
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=96.66 E-value=0.049 Score=43.90 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=29.4
Q ss_pred HHHHHHhccCCceEEcCCCCCHHHHHHHHhcCCCCCEEEEEEeCH-HHHHHHHhcC
Q psy6801 74 LVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPK-EVIIDRLSKR 128 (228)
Q Consensus 74 ~~~~~l~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~vi~l~~~~-e~~~~R~~~R 128 (228)
.+.+.+.. ++.+|+|--+... ..+......| .+||+..|. +++.+|+.+|
T Consensus 181 ~V~~~~~~-gk~viLdid~qg~---~~lk~~~~~p-i~IFI~PpS~e~L~~r~~~r 231 (292)
T 3tvt_A 181 SVREVAEK-GKHCILDVSGNAI---KRLQVAQLYP-VAVFIKPKSVDSVMEMNRRM 231 (292)
T ss_dssp HHHHHHHH-TCEEEECCCTHHH---HHHHHTTCCC-EEEEECCSCHHHHHHTCTTS
T ss_pred HHHHHHHc-CCcEEEeccchhh---hhcccccccc-eEEEEECCCHHHHHHHHhCC
Confidence 34444444 8999998754433 3444443445 678887754 6666655444
No 310
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.65 E-value=0.00059 Score=62.85 Aligned_cols=32 Identities=25% Similarity=0.542 Sum_probs=27.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
+..++|.||||+||||+++.++..++..++.+
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34689999999999999999999998766543
No 311
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.65 E-value=0.0011 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|.|++|+||||+.++|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999999864
No 312
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0012 Score=49.22 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|.|++||||||+...|...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999764
No 313
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.65 E-value=0.0011 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+.+|+|.|++|+||||+.++|...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999764
No 314
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.65 E-value=0.0011 Score=55.52 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...++|.||+||||||+.+.|+..+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3479999999999999999998766
No 315
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.65 E-value=0.0011 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.724 Sum_probs=21.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|.|.+|+||||+.++|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999999998654
No 316
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.64 E-value=0.0012 Score=57.23 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|+|+|++||||||+++.|+..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 5589999999999999999998776
No 317
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.64 E-value=0.0012 Score=48.08 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.+|+|.|++||||||+.++|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999863
No 318
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.63 E-value=0.00087 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+-+++|.|+.||||||+.+.|+--+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578999999999999999997654
No 319
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.62 E-value=0.0011 Score=48.09 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCChHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRII 28 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~ 28 (228)
.+|+|.|.+|+||||+.++|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 579999999999999999884
No 320
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.62 E-value=0.0013 Score=54.75 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+|+|+|+||+||||++..|+..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998776
No 321
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.62 E-value=0.0016 Score=53.30 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeehhH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGD 40 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~~d 40 (228)
..++|.|++|+||||+++.+++..+..+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 468999999999999999999988866676533
No 322
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.61 E-value=0.0014 Score=48.26 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=21.8
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+...+|+|.|.+|+||||+.+++...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999998753
No 323
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.61 E-value=0.00091 Score=52.97 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.||.||||||+.+.|+-.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999997654
No 324
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.61 E-value=0.0014 Score=50.10 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...+|+|.|++||||||+..+|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 325
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.60 E-value=0.0011 Score=48.60 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|.|++||||||+.++|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999853
No 326
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.60 E-value=0.0012 Score=53.34 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=21.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.++|.||+|+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 38999999999999999999986
No 327
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.60 E-value=0.0013 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|.|++|+||||+.++|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999998753
No 328
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.59 E-value=0.0013 Score=54.50 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+|+|.|+|||||||+.+.|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 329
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.58 E-value=0.0013 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|+|++|+||||+.++|..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 456899999999999999999864
No 330
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.58 E-value=0.0012 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.+|+|.|.+|+||||+.++|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 57999999999999999999653
No 331
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.57 E-value=0.0012 Score=52.88 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=20.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.-+++|.|++||||||++..++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999988754
No 332
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.57 E-value=0.0012 Score=55.06 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-.++|.||+||||||+.+.|+--+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3478999999999999999997644
No 333
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.57 E-value=0.0011 Score=55.39 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
...++|.|++||||||+.+.|...+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35799999999999999999988764
No 334
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.57 E-value=0.0016 Score=51.25 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=23.4
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+...++++.|.+||||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 455689999999999999999998654
No 335
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.57 E-value=0.0014 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|+|.+|+||||+.++|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 336
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.56 E-value=0.0014 Score=49.53 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|.|++|+||||+..+|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999865
No 337
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.56 E-value=0.0014 Score=59.82 Aligned_cols=30 Identities=13% Similarity=0.364 Sum_probs=26.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
.++|.||||+|||++|+.|++.++.+++.+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i 519 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEE
Confidence 589999999999999999999998766543
No 338
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.56 E-value=0.0015 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=22.0
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+...+|+|+|.+||||||+..+|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999998653
No 339
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.56 E-value=0.0012 Score=56.41 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=26.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----Ccceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~ 38 (228)
+.+|+|+|++||||||++..|+..+ .+.+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4579999999999999999999876 3455555
No 340
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.56 E-value=0.0015 Score=48.70 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
..+|+|.|.+|+||||+.+.|...+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45899999999999999988876553
No 341
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.55 E-value=0.0015 Score=48.97 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|+|.+|+||||+.++|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999764
No 342
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.55 E-value=0.0011 Score=52.91 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.||.||||||+.+.|+-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999997543
No 343
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.55 E-value=0.0015 Score=48.19 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|+|.+|+||||+.++|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999999753
No 344
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.54 E-value=0.0015 Score=53.88 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|+|||||||+.+.|+..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998654
No 345
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.53 E-value=0.0015 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|.|.+|+||||+.++|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999975
No 346
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.53 E-value=0.0021 Score=48.65 Aligned_cols=26 Identities=27% Similarity=0.144 Sum_probs=23.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...+++++|++||||||.+-.++.++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45689999999999999999998887
No 347
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.53 E-value=0.0015 Score=48.36 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|.|++||||||+.++|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999999753
No 348
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.53 E-value=0.0016 Score=48.59 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|+|.+||||||+.++|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999999864
No 349
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.53 E-value=0.0016 Score=48.63 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|+|++|+||||+..+|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999765
No 350
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.52 E-value=0.0018 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.+|+|.|.+|+||||+.++|...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999653
No 351
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.52 E-value=0.0016 Score=53.37 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|+|.|++||||||++..|+..+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5589999999999999999998876
No 352
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.52 E-value=0.0016 Score=49.47 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|+|.+|+||||+.++|...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 468999999999999999998653
No 353
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.51 E-value=0.0016 Score=48.42 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=21.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|+|++|+||||+.++|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999764
No 354
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.51 E-value=0.0015 Score=49.68 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|+|++|+||||+.++|...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999764
No 355
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.50 E-value=0.0014 Score=54.99 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-.++|.||+||||||+.+.|+--+
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3578999999999999999997644
No 356
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.50 E-value=0.0014 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|.||+||||||+.+.|+--+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999997543
No 357
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.49 E-value=0.0014 Score=54.51 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|.||+||||||+.+.|+--+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3578999999999999999997544
No 358
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.49 E-value=0.0016 Score=48.60 Aligned_cols=24 Identities=38% Similarity=0.678 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|+|.+|+||||+.++|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999998763
No 359
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.49 E-value=0.0016 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|.|.+|+||||+.++|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 356899999999999999999974
No 360
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.0016 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.++|.||+|+||||+++.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 39999999999999999999986
No 361
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.48 E-value=0.0017 Score=53.11 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh--Ccceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF--NVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~--~~~~i~~ 38 (228)
..++|.||||+||||+|..++... .+.++++
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 357999999999999999998753 3456666
No 362
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.47 E-value=0.0018 Score=47.46 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|.|.+||||||+.++|...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999754
No 363
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.47 E-value=0.0016 Score=48.64 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|.|++||||||+.++|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999653
No 364
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.46 E-value=0.0018 Score=55.06 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
-.|+|+||+||||||+.+.|...++
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4789999999999999999988773
No 365
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.46 E-value=0.0011 Score=57.80 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
.-|+|+||||+|||++|+.|++.++
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4689999999999999999999874
No 366
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.46 E-value=0.0015 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|.||+||||||+.+.|+--+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3478999999999999999997644
No 367
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0017 Score=49.31 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|.|.+||||||+..+|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 345899999999999999999875
No 368
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.44 E-value=0.0015 Score=54.16 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..++.|+|++||||||++..|+-..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 369
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.44 E-value=0.0018 Score=48.21 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=21.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|+|.+|+||||+.++|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999999653
No 370
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.44 E-value=0.0016 Score=54.49 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|.||+||||||+.+.|+--+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3478999999999999999997544
No 371
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.44 E-value=0.0016 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.171 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|.||+||||||+.+.|+--+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4578999999999999999987644
No 372
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.43 E-value=0.0019 Score=48.42 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|.|++|+||||+.++|..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 373
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.43 E-value=0.0018 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|.|.+|+||||+.++|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3568999999999999999999753
No 374
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.43 E-value=0.0018 Score=51.86 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.0
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|+|.+||||||+.++|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999754
No 375
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.002 Score=48.11 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+|+|+|.+|+||||+.++|...-
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4689999999999999999997653
No 376
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.43 E-value=0.0019 Score=48.98 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|.|.+|+||||+..+|..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999998875
No 377
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.43 E-value=0.0009 Score=50.77 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|.|++||||||+.+.|..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999998853
No 378
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0019 Score=47.40 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|.|.+|+||||+.++|...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3468999999999999999998653
No 379
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.42 E-value=0.0017 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|.||+||||||+.+.|+--+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3478999999999999999997543
No 380
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.40 E-value=0.002 Score=48.05 Aligned_cols=24 Identities=33% Similarity=0.653 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|.|++|+||||+.++|...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 358999999999999999999753
No 381
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.40 E-value=0.0018 Score=48.15 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
++|+|.|.+||||||+.++|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999999654
No 382
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.40 E-value=0.00091 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.||+||||||+.+.|+..+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 4579999999999999999997755
No 383
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.39 E-value=0.0024 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|+|.+|+||||+.++|...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999754
No 384
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.39 E-value=0.0016 Score=52.69 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.|+.||||||+.+.|+--+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4578999999999999999997654
No 385
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.38 E-value=0.0019 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.742 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
++|++.|.|||||||+.+.|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999654
No 386
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.38 E-value=0.0022 Score=47.89 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=21.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|+|.+|+||||+.++|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 4468999999999999999998753
No 387
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0017 Score=55.88 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.||.||||||+++.|+-.+
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4689999999999999999997754
No 388
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.38 E-value=0.0014 Score=48.43 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRII 28 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~ 28 (228)
...+|+|.|++||||||+..+|.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 35689999999999999999885
No 389
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.37 E-value=0.0026 Score=48.31 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|.|.+|+||||+..+|...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999998753
No 390
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.36 E-value=0.0022 Score=47.76 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|+|.+|+||||+.++|...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999998653
No 391
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.36 E-value=0.0023 Score=47.74 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|+|.+|+||||+.++|..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999975
No 392
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.35 E-value=0.002 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..++|+|+|++|+||||+.+.|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 346899999999999999999865
No 393
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.35 E-value=0.0015 Score=53.85 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...++|.|++||||||+.+.|+..+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998776
No 394
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.34 E-value=0.0028 Score=52.15 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=24.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHhCc
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHFNV 33 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~~~ 33 (228)
.+..++|.||+|+||||+|+.+++.+..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3456899999999999999999999865
No 395
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.33 E-value=0.0024 Score=48.01 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|+|.+|+||||+.++|...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3468999999999999999999653
No 396
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.33 E-value=0.0023 Score=53.27 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..++.|.|||||||||++..++...
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998765
No 397
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.33 E-value=0.0014 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=11.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|.|.+|+||||+..+|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999998864
No 398
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.33 E-value=0.0023 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|.|++||||||+.++|..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999865
No 399
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.32 E-value=0.0022 Score=47.60 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=21.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|.|++|+||||+.++|...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999654
No 400
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0022 Score=47.94 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|+|++|+||||+.++|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999653
No 401
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.31 E-value=0.0024 Score=55.62 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.9
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|+|+|++||||||++..|+..+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999765
No 402
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.31 E-value=0.0023 Score=48.18 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|+|.+|+||||+..+|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998653
No 403
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.30 E-value=0.0014 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-.++|.||+||||||+.+.|+--+
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3578999999999999999997544
No 404
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.29 E-value=0.002 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|++.|++|+||||+.++|..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999853
No 405
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.28 E-value=0.0024 Score=47.46 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
-..+|+|+.||||||+...|.-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3789999999999999999976654
No 406
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.28 E-value=0.0024 Score=51.80 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCcccccceEEEEcCCCCChHHHHHHHHH
Q psy6801 1 MLNTLLMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 1 m~~~~~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
|-.+.+...|+|.|.||+||||+.++|..
T Consensus 1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp --CCCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCccCCEEEEECCCCCCHHHHHHHHhC
Confidence 44555556799999999999999999964
No 407
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.27 E-value=0.0023 Score=59.37 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..++|+|+||+||||+++.|++.+
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999987
No 408
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0026 Score=47.28 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|.|.+||||||+.++|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999974
No 409
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.27 E-value=0.0029 Score=47.24 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=21.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|.|.+|+||||+.++|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999998653
No 410
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.26 E-value=0.0025 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|+|++|+||||+.++|..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999853
No 411
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.26 E-value=0.0025 Score=48.70 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=21.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|+|.+|+||||+..+|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999999864
No 412
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.26 E-value=0.0021 Score=47.52 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=21.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|+|.+|+||||+.++|...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999753
No 413
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.25 E-value=0.0023 Score=53.94 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-.++|.||+||||||+.+.|+--+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3578999999999999999997543
No 414
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.25 E-value=0.0028 Score=47.63 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|.|.+|+||||+..++...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999753
No 415
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.24 E-value=0.00095 Score=51.00 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.7
Q ss_pred cccceEEEEcCCCCChHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRII 28 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~ 28 (228)
....+|+|.|.+||||||+.++|.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCT
T ss_pred cCccEEEEECCCCCCHHHHHHHHh
Confidence 345689999999999999999886
No 416
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.24 E-value=0.002 Score=48.48 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=19.9
Q ss_pred cceEEEEcCCCCChHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRII 28 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~ 28 (228)
..+|+|.|.+|+||||+.++|.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999885
No 417
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.23 E-value=0.003 Score=48.33 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=21.5
Q ss_pred cccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+...+|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 34568999999999999999998654
No 418
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.23 E-value=0.0027 Score=51.49 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|++.|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998776
No 419
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.21 E-value=0.0026 Score=47.96 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|+|.+|+||||+.++|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999864
No 420
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.20 E-value=0.0025 Score=53.90 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..++.|+|++||||||++..|+-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHH
Confidence 45799999999999999998763
No 421
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.20 E-value=0.0028 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=21.9
Q ss_pred cccceEEEEcCCCCChHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
+...+|++.|.|||||||+.++|..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC
Confidence 3456899999999999999999975
No 422
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.19 E-value=0.0032 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..-.++|.|+||+|||++|..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3458999999999999999887643
No 423
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.18 E-value=0.003 Score=47.63 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|+|.+|+||||+..+|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999998753
No 424
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.18 E-value=0.0033 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|+|.+|+||||+..+|..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999874
No 425
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.16 E-value=0.0033 Score=52.14 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=26.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----Ccceeehh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATG 39 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~ 39 (228)
..++.|.|+|||||||+|..++... .+.+++.+
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4579999999999999999998654 34566653
No 426
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.15 E-value=0.003 Score=49.80 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=21.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|+|.+||||||+..+|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999653
No 427
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.15 E-value=0.0033 Score=51.93 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.5
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+.+|+|.|++|+||||+++.|+..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998665
No 428
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.15 E-value=0.0014 Score=54.52 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|.||+||||||+.+.|+--+
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578999999999999999997543
No 429
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.15 E-value=0.0036 Score=50.64 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|++.|++||||||++..|+..+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998776
No 430
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.15 E-value=0.0029 Score=47.30 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|+|.+|+||||+.++|..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998854
No 431
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.14 E-value=0.0029 Score=52.75 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+.+|+|.|.+||||||+++.+.=.+
T Consensus 32 ~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHHHHHh
Confidence 46789999999999999999984333
No 432
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.13 E-value=0.003 Score=52.53 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|++||||||+.+.|+-..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4579999999999999999997543
No 433
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.13 E-value=0.0036 Score=57.28 Aligned_cols=23 Identities=17% Similarity=0.515 Sum_probs=21.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.++|.||||+|||++|+.|++.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999987
No 434
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.12 E-value=0.0042 Score=50.78 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=25.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCc--ceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNV--KHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~--~~i~~ 38 (228)
..++|.|++|+||||+++.+++..+. .+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 36899999999999999999988743 34554
No 435
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.12 E-value=0.0032 Score=47.13 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=20.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|.|.+|+||||+.++|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999854
No 436
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.12 E-value=0.0032 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|+|.+|+||||+..+|..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999865
No 437
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.11 E-value=0.0035 Score=50.89 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+++|.|++||||||+.+.|. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4578999999999999999998 54
No 438
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.10 E-value=0.0027 Score=55.44 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+..++|.||+||||||+.+.|...+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4469999999999999999998766
No 439
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.10 E-value=0.0029 Score=56.40 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
..++|.||+||||||+++.|+..++
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999999874
No 440
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.10 E-value=0.0034 Score=50.99 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-|+|.|+||+|||++|+.+++..
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEEEECCCCchHHHHHHHHHHhC
Confidence 458999999999999999999864
No 441
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.10 E-value=0.0036 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.7
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...+|+|+|.+|+||||+..+|..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999864
No 442
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.09 E-value=0.0041 Score=48.28 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh---Cc--ceeehh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF---NV--KHIATG 39 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~---~~--~~i~~~ 39 (228)
++|++.|++|+||||++-.++..+ |. .++++|
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 579999999999999988887765 43 344553
No 443
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.09 E-value=0.0038 Score=51.89 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=25.5
Q ss_pred CCcccccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 1 m~~~~~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
|..+....+|++.|..||||||+++.+.-.+
T Consensus 3 ~~~~~~~~k~lllG~~~sGKsT~~kq~~~~~ 33 (354)
T 2xtz_A 3 MGSGIHIRKLLLLGAGESGKSTIFKQIKLLF 33 (354)
T ss_dssp CCCCCEEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCceeEEEECCCCCcHHHHHHHHHHHh
Confidence 5556667789999999999999999986444
No 444
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.09 E-value=0.003 Score=53.77 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q psy6801 10 AVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 10 i~i~G~~GsGKTt~a~~L~~~ 30 (228)
++|+|++||||||+.+.|+-.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999999654
No 445
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.08 E-value=0.0039 Score=53.27 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
|.+|+|.|++||||||++..|+..+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998665
No 446
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.08 E-value=0.0035 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=21.1
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..++|+|+|.+|+||||+.+.|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999998854
No 447
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.08 E-value=0.0027 Score=47.31 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.2
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|+|.+|+||||+.++|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998654
No 448
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.07 E-value=0.0035 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|.|.+|+||||+..+|..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 45899999999999999999864
No 449
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.04 E-value=0.0038 Score=49.94 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|.|.|||||||+.++|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999753
No 450
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.04 E-value=0.0036 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.6
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
....|+|+|+||+||||+.++|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4457999999999999999999653
No 451
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.00 E-value=0.0036 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..++|.|++||||||+.+.|+-.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999763
No 452
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.99 E-value=0.0047 Score=50.38 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=25.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
..-|+|.|++|+||||++..|.++ |..+++-
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d 174 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLVAD 174 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence 345899999999999999999885 6666654
No 453
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.98 E-value=0.0031 Score=47.35 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=21.3
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...+|+|.|.+|+||||+.+.+...+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC
Confidence 34689999999999999998876543
No 454
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.98 E-value=0.0042 Score=47.28 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|+|.+|+||||+.++|..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 455
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.97 E-value=0.0029 Score=47.01 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.4
Q ss_pred ccceEEEEcCCCCChHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRII 28 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~ 28 (228)
...+|+|.|.+|+||||+.++|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999884
No 456
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.95 E-value=0.0056 Score=55.93 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.6
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.-++|+|+||+|||++++.|++.+
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999987
No 457
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.95 E-value=0.0041 Score=51.41 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+.++.|.|+|||||||+|..++..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999876
No 458
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.94 E-value=0.0035 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
...|+|.|++||||||+.+.|.-
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999853
No 459
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.93 E-value=0.0052 Score=51.11 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=26.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----Ccceeeh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIAT 38 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~ 38 (228)
..++.|.|+|||||||+|..++... .+.+|++
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4579999999999999999988764 4556776
No 460
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.93 E-value=0.0045 Score=50.68 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...+.|.|+|||||||+|..++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4579999999999999999998764
No 461
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.92 E-value=0.0034 Score=50.93 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...++|.|++||||||+.+.|+-.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 457899999999999999999643
No 462
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.91 E-value=0.0041 Score=57.68 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=24.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh---Cccee
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF---NVKHI 36 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~---~~~~i 36 (228)
.++|.||||+|||++|+.|++.+ +.+++
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i 620 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMI 620 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEE
Confidence 68999999999999999999988 44444
No 463
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.86 E-value=0.0055 Score=52.16 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+|+|.|+.||||||++..|+..+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5578899999999999999999877
No 464
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.85 E-value=0.0051 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+|+|.|.+|+||||+..++..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999863
No 465
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.84 E-value=0.0053 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
++|+|.|.|||||||+.+.|...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999765
No 466
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.81 E-value=0.0044 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.4
Q ss_pred cceEEE--EcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVI--IGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i--~G~~GsGKTt~a~~L~~~~ 31 (228)
+..++| .|++|+||||+++.+++.+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 345777 9999999999999998876
No 467
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.81 E-value=0.0085 Score=46.06 Aligned_cols=25 Identities=24% Similarity=0.098 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
..+.+++|++||||||.+-.++.++
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4678999999999999999998887
No 468
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.0057 Score=46.88 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|+|.+|+||||+..+|...
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 358999999999999999998653
No 469
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.80 E-value=0.0074 Score=50.38 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=26.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh-----Ccceeehh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF-----NVKHIATG 39 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~-----~~~~i~~~ 39 (228)
+..+.|.|+|||||||+|..++... .+.+|+++
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4578999999999999999988764 45667664
No 470
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.78 E-value=0.0055 Score=49.90 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHhCcceeeh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIAT 38 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~~~~~i~~ 38 (228)
.-|+|.|++|+||||+|..|.+ -|...++-
T Consensus 148 ~gvli~G~sG~GKStlal~l~~-~G~~lv~D 177 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN-KNHLFVGD 177 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT-TTCEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCEEEeC
Confidence 3589999999999999999976 46666654
No 471
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.78 E-value=0.0051 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+.|.|+|||||||+|..++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999865
No 472
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.76 E-value=0.007 Score=50.97 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.8
Q ss_pred ccceEEEEcCCCCChHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
.+.++.|.|+|||||||+.+.|..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 356899999999999999999987
No 473
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.76 E-value=0.0066 Score=43.87 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=19.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
+...+|.||.||||||+...|.=
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999999888854
No 474
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.76 E-value=0.0044 Score=47.40 Aligned_cols=26 Identities=35% Similarity=0.649 Sum_probs=21.4
Q ss_pred ccceEEEEcCCCCChHHHHHH-HHHHh
Q psy6801 6 LMLKAVIIGAPGCGKGTISSR-IIDHF 31 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~-L~~~~ 31 (228)
...+|+|.|.+||||||+.++ +...+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 446899999999999999998 54443
No 475
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.74 E-value=0.0065 Score=49.57 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-.++|.|+||+||||++..++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998654
No 476
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.74 E-value=0.0063 Score=49.70 Aligned_cols=23 Identities=9% Similarity=0.249 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
++.|.|+|||||||+|..++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998876554
No 477
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.73 E-value=0.0068 Score=46.67 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=20.6
Q ss_pred cccceEEEEcCCCCChHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
|.-.+|+|.|.+|+|||++..++..
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHh
Confidence 3345899999999999999999864
No 478
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.73 E-value=0.0055 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.+++|.||+||||||+.+.|+--+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 478999999999999999998655
No 479
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.72 E-value=0.0054 Score=52.65 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=20.9
Q ss_pred cccceEEEEcCCCCChHHHHHHHHH
Q psy6801 5 LLMLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 5 ~~~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
|..++|+|+|.||+||||+.++|..
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4556899999999999999999854
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.71 E-value=0.0055 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|+|+.||||||+.+.|+-.+
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999997644
No 481
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.70 E-value=0.0065 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.++|.|++||||||++..+++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998877
No 482
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.68 E-value=0.0061 Score=52.06 Aligned_cols=24 Identities=33% Similarity=0.684 Sum_probs=21.4
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+.+|+|.|+|||||||+.+.|...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999764
No 483
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.67 E-value=0.0026 Score=56.63 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=24.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHHhCccee
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHFNVKHI 36 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~~~~~i 36 (228)
-|+|.||||+|||++|+.+++.++...+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~ 356 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVY 356 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEEC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCcee
Confidence 5999999999999999999998765443
No 484
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.65 E-value=0.0076 Score=49.93 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
+-++.|+|++||||||+.+.|+....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999988874
No 485
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.62 E-value=0.0026 Score=47.83 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=5.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
..+|+|.|.+|+||||+..+|...
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999988643
No 486
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.62 E-value=0.0057 Score=47.52 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHHh
Q psy6801 9 KAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+|+|.|..|+||||+|..||..+
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~l 24 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIM 24 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 57779999999999999999887
No 487
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.62 E-value=0.0054 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHH
Q psy6801 8 LKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 8 ~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
+.|+|.|++||||||+.+.|+..
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCcHHHHHHHHhCC
Confidence 45899999999999999999754
No 488
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.60 E-value=0.007 Score=47.90 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=21.9
Q ss_pred ccceEEEEcCCCCChHHHHHHHHHH
Q psy6801 6 LMLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 6 ~~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
...+|+|.|.+|+||||+.+.|...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999653
No 489
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.60 E-value=0.0065 Score=53.86 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.||+||||||+.+.|+-.+
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998765
No 490
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.58 E-value=0.0031 Score=48.17 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.++|+|+|.+||||||+.++|...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999998654
No 491
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.56 E-value=0.0082 Score=51.34 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=23.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHhC
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHFN 32 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~~ 32 (228)
.-+++|+|++||||||+.+.|+....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 45899999999999999999998774
No 492
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.56 E-value=0.0057 Score=54.22 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+.+++|.||+||||||+.+.|+--+
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 4579999999999999999997765
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.55 E-value=0.0067 Score=53.09 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=0.0
Q ss_pred eEEEEcCCCCChHHHHHH--HH
Q psy6801 9 KAVIIGAPGCGKGTISSR--II 28 (228)
Q Consensus 9 ~i~i~G~~GsGKTt~a~~--L~ 28 (228)
.++|.|++||||||+++. ++
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~ 62 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYN 62 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
No 494
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.51 E-value=0.0081 Score=53.17 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.8
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
...++|.|+||+||||++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999988765
No 495
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.51 E-value=0.0076 Score=48.32 Aligned_cols=24 Identities=13% Similarity=0.464 Sum_probs=21.3
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.++|+|+|.+|+||||+.++|...
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCC
Confidence 458999999999999999999754
No 496
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.50 E-value=0.0025 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCChHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIID 29 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~ 29 (228)
..+++|.|++||||||+.+.|.-
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHhcc
Confidence 45899999999999999999854
No 497
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.47 E-value=0.0092 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.2
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.++|+|.|.||+||||+.++|...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999763
No 498
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.46 E-value=0.0078 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=22.0
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
+-+++|.|+.||||||+.+.|+-.+
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999997644
No 499
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.46 E-value=0.0065 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.7
Q ss_pred cceEEEEcCCCCChHHHHHHHHHHh
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDHF 31 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~~ 31 (228)
.-+++|.|+.||||||+.+.|+-.+
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999997644
No 500
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.46 E-value=0.0079 Score=48.67 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=21.1
Q ss_pred cceEEEEcCCCCChHHHHHHHHHH
Q psy6801 7 MLKAVIIGAPGCGKGTISSRIIDH 30 (228)
Q Consensus 7 ~~~i~i~G~~GsGKTt~a~~L~~~ 30 (228)
.+.|+|+|.+||||||+.+.|...
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCC
Confidence 468999999999999999999653
Done!