RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6801
(228 letters)
>gnl|CDD|233369 TIGR01351, adk, adenylate kinase. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family are
known or believed to be adenylate kinase. However, some
members accept other nucleotide triphosphates as donors,
may be unable to use ATP, and may fail to complement
adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 210
Score = 257 bits (658), Expect = 2e-87
Identities = 102/210 (48%), Positives = 137/210 (65%), Gaps = 5/210 (2%)
Query: 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD 68
+ V++G PG GKGT + RI + + + HI+TGD+LR+ I T LG KAKEYM KG LVPD
Sbjct: 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60
Query: 69 DLMIDLVKN---EVKDLKCNYLLDGFPRTYDQAMALFK-NHLSPNCVMHINVPKEVIIDR 124
+++ LVK + +D + ++LDGFPRT QA AL + V+ ++VP E +++R
Sbjct: 61 EIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVER 120
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
LS R I P+ GRVY+L FN PK PG DD TGE LIQR+DD E +KKRLE + + +PL+
Sbjct: 121 LSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLI 180
Query: 185 DYYDNREVLDTFTGN-TTDEIWPRIYEHLN 213
DYY R +L GN DE+W RI E L
Sbjct: 181 DYYKKRGILVQIDGNGPIDEVWKRILEALK 210
>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase.
Length = 186
Score = 248 bits (636), Expect = 2e-84
Identities = 89/184 (48%), Positives = 126/184 (68%), Gaps = 5/184 (2%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLM 71
++G PG GKGT + RI+ + + H++TGD+LR+ + T LG +AKEYM+KG LVPD+++
Sbjct: 1 LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60
Query: 72 IDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFKNHL---SPNCVMHINVPKEVIIDRLS 126
I LVK ++ C +LLDGFPRT QA AL + + V+ +VP EV+++RL+
Sbjct: 61 IGLVKERLEQNDCKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLT 120
Query: 127 KRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDY 186
R IHP SGR Y+L+FN PK PG DD+TGE L QR DD E +KKRLET+ + +P++DY
Sbjct: 121 GRRIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPVIDY 180
Query: 187 YDNR 190
Y +
Sbjct: 181 YKKK 184
>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 246 bits (630), Expect = 4e-83
Identities = 89/212 (41%), Positives = 129/212 (60%), Gaps = 7/212 (3%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
+++G PG GKGT + I + + + HI+TGD+LR+ + T LG +AK YM+ G LVPD++
Sbjct: 4 ILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEI 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFK----NHLSPNCVMHINVPKEVIIDR 124
+I LVK + C +LLDGFPRT QA AL + + + V+ I+VP E +++R
Sbjct: 64 VIGLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVER 123
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
LS R I PA GR Y++ FN PK G D+ GE+LIQR DD E ++KRLE + + PL+
Sbjct: 124 LSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLI 183
Query: 185 DYYDNREVLDTFTGN-TTDEIWPRIYEHLNIR 215
DYY + L G + DE++ I + L
Sbjct: 184 DYYKKKGKLKKIDGTGSIDEVFADILKALGKL 215
>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for homeostasis of
adenosine phosphates.
Length = 194
Score = 236 bits (605), Expect = 1e-79
Identities = 89/198 (44%), Positives = 124/198 (62%), Gaps = 13/198 (6%)
Query: 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD 68
+ +++G PG GKGT + R+ + + HI+TGD+LR IA T LG KAKEY++ G LVPD
Sbjct: 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60
Query: 69 DLMIDLVKNEVKDLKCN--YLLDGFPRTYDQAMALFKN---HLSPNCVMHINVPKEVIID 123
+++I L+K +K C ++LDGFPRT DQA AL + + P+ V+ ++VP EV+I+
Sbjct: 61 EIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIE 120
Query: 124 RLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPL 183
R+ R I P SGRVY+L G DD+TGE L QR DD E IKKRLE + + PL
Sbjct: 121 RILGRRICPVSGRVYHL--------GKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPL 172
Query: 184 LDYYDNREVLDTFTGNTT 201
+DYY + L G+
Sbjct: 173 IDYYKKKGKLVEIDGSGD 190
>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase.
Length = 244
Score = 180 bits (457), Expect = 9e-57
Identities = 84/189 (44%), Positives = 121/189 (64%), Gaps = 6/189 (3%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
++IG PG GKGT S I D + + H+ATGD+LR+ +A T LG+KAKE M+KG LV DDL
Sbjct: 35 ILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL 94
Query: 71 MIDLVKNEVKDLKCN--YLLDGFPRTYDQAMAL----FKNHLSPNCVMHINVPKEVIIDR 124
++ ++ +K C ++LDGFPRT QA L K + V++ + ++ +R
Sbjct: 95 VVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEER 154
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
++ RWIHP+SGR Y+ F PK PG+DD+TGE LIQR DD +K RLE F + +P++
Sbjct: 155 ITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVI 214
Query: 185 DYYDNREVL 193
DYY + V+
Sbjct: 215 DYYAKKGVV 223
>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional.
Length = 215
Score = 152 bits (385), Expect = 3e-46
Identities = 75/205 (36%), Positives = 130/205 (63%), Gaps = 7/205 (3%)
Query: 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH----IAQNTTLGLKAKEYMNKGL 64
+ +++GAPG GKGT SS + + F V+H+ TGD LR++ I+ T EYM+ G
Sbjct: 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGE 64
Query: 65 LVPDDLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDR 124
LVPD ++ ++V+ + D ++LDG+PR +QA L ++ + V++++V +E ++DR
Sbjct: 65 LVPDAVVNEIVEEALSDAD-GFVLDGYPRNLEQAEYL-ESITDLDVVLYLDVSEEELVDR 122
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
L+ R + P G Y+++FN P++ G+ D G +LIQRDDD E +++RL+ F++ +P++
Sbjct: 123 LTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVI 182
Query: 185 DYYDNREVLDTFTGNTT-DEIWPRI 208
++Y ++ VL G T DE+W I
Sbjct: 183 EHYRDQGVLVEVDGEQTPDEVWADI 207
>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase.
Length = 505
Score = 149 bits (377), Expect = 3e-42
Identities = 70/197 (35%), Positives = 117/197 (59%), Gaps = 9/197 (4%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
+I GAP GKGT I+ F + HI+TGD+LR+ ++ T +G +AKE+MN G LVPD++
Sbjct: 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEI 60
Query: 71 MIDLVKNEV--KDLK-CNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127
+I +V + +D K +LLDG+PR++ QA +L K + P+ + ++VP E++IDR
Sbjct: 61 VIAMVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVG 120
Query: 128 RWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYY 187
R + P +G++Y++ P+ I +LI R DD E +K RL+ + + + +L Y
Sbjct: 121 RRLDPVTGKIYHIKNFPPESEEIK----ARLITRPDDTEEKVKARLQIYKKNAEAILSTY 176
Query: 188 DNREVLDTFTGNTTDEI 204
+ ++ GN E+
Sbjct: 177 SD--IMVKIDGNRPKEV 191
>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional.
Length = 184
Score = 136 bits (343), Expect = 3e-40
Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 37/203 (18%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
M + + +G PG GKGT + + +H ++ HI+TGDILR I + T LG+KA+ YM+KG LV
Sbjct: 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELV 60
Query: 67 PDDLMIDLVKNEVK--DLKCNYLLDGFPRTYDQAMA----LFKNHLSPNCVMHINVPKEV 120
PD L++DLV+ ++ D ++LDGFPR QA L + S V++++VP +V
Sbjct: 61 PDQLVLDLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDV 120
Query: 121 IIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTI 180
+++RL R R DD E I++RLE + +
Sbjct: 121 VVERLLAR-------------------------------GRKDDTEEVIRRRLEVYREQT 149
Query: 181 KPLLDYYDNREVLDTFTGNTTDE 203
PL+DYY +R+ L T GN + E
Sbjct: 150 APLIDYYRDRQKLLTIDGNQSVE 172
>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional.
Length = 211
Score = 132 bits (333), Expect = 2e-38
Identities = 74/207 (35%), Positives = 121/207 (58%), Gaps = 6/207 (2%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
+K V +G PG GKGTI+ + + N HI+TGD+ R +I +T LG + K+ + G LVP
Sbjct: 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVP 60
Query: 68 DDLMIDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFKNHLSPNC-VMHINVPKEVIIDR 124
D + I +V++++ +K N++LDGFPR +QA AL K PN +++ + +E++I R
Sbjct: 61 DSITIKIVEDKINTIKNNDNFILDGFPRNINQAKALDK--FLPNIKIINFLIDEELLIKR 118
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
LS R I + ++N+ K+ GI D+ L QR DDK E++K RL+ + KPL+
Sbjct: 119 LSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLI 178
Query: 185 DYYDNREVLDTFTGNTT-DEIWPRIYE 210
++Y L+ + DE+ ++ E
Sbjct: 179 EFYSKCNRLNNIDASKDIDEVKKKLIE 205
>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional.
Length = 191
Score = 131 bits (330), Expect = 3e-38
Identities = 71/216 (32%), Positives = 109/216 (50%), Gaps = 34/216 (15%)
Query: 4 TLLMLKAVI-IGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK 62
T K VI +G PG GKGT + R+ +K ++TGDILR H+A+ T LG +AK M
Sbjct: 2 TQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEA 61
Query: 63 GLLVPDDLMIDLVKNEVKDLK-CNYLLDGFPRTYDQAMALFK----NHLSPNCVMHINVP 117
G LVPD+L++ L+++E+ ++ + DGFPRT QA AL + V+ + VP
Sbjct: 62 GDLVPDELILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVP 121
Query: 118 KEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFD 177
E +I R+ +R + R DD E +++R + +
Sbjct: 122 DEELIRRIVER---------------------------ARQEGRSDDNEETVRRRQQVYR 154
Query: 178 QTIKPLLDYYDNREVLDTFTG-NTTDEIWPRIYEHL 212
+ +PL+DYY+ R L G T DE++ RI + L
Sbjct: 155 EQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 123 bits (310), Expect = 3e-35
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 36/189 (19%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ +I+G PG GK T++ ++ + H+ TGDILR+ IA+ T LG + K+Y++KG LVP
Sbjct: 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVP 60
Query: 68 DDLMIDLVKNEVKDLKCN--YLLDGFPRTYDQAMAL---FKNHLSP-NCVMHINVPKEVI 121
D+++ LVK + + C ++LDGFPRT QA AL K + V+ ++VP+E++
Sbjct: 61 DEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELL 120
Query: 122 IDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIK 181
++RL R + R+DD E +KKRL+ + +
Sbjct: 121 LERLLGRRV------------------------------REDDNEETVKKRLKVYHEQTA 150
Query: 182 PLLDYYDNR 190
PL++YY
Sbjct: 151 PLIEYYSVT 159
>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase.
Length = 261
Score = 124 bits (314), Expect = 5e-35
Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 19/220 (8%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V +G PG GKGT +SR+ V HIATGD++R I + LG + KE +N+G LVPD++
Sbjct: 33 VFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEI 92
Query: 71 MIDLVKNEVKDLKCN----YLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLS 126
+ L+ ++ + ++LDGFPRT QA L + + V+++ + +EV++++
Sbjct: 93 IFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEIL-EGVTDIDLVVNLKLREEVLVEKCL 151
Query: 127 KRWIHPASGRVYNL-DFNAPKKPGIDDIT----------GEKLIQRDDDKPEAIKKRLET 175
R I G+ +N+ D + + G I KLI R DD E +K RL
Sbjct: 152 GRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRV 211
Query: 176 FDQTIKPLLDYYDNREVLDTF--TGNTTDEIWPRIYEHLN 213
+ + +P+ D+Y R L F G E WPR+ + LN
Sbjct: 212 YKEESQPVEDFYRKRGKLLEFELPGGIP-ETWPRLLQALN 250
>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional.
Length = 229
Score = 114 bits (288), Expect = 1e-31
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
LK V+ GAPG GKGT + + N+KHI G+ILR I TT+G + ++ + G LVP
Sbjct: 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVP 66
Query: 68 DDLMIDLVKNEV-KDLKCNY---LLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIID 123
D+L+I +VK+E+ K + +LDGFPR Q L K + + ++I +P+ ++I
Sbjct: 67 DNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGK-ITNIDLFVNIYLPRNILIK 125
Query: 124 RLSKRWIHPASGRVYNL------DFNAP---KKPGIDDITGE-KLIQRDDDKPEAIKKRL 173
+L R I R +N+ ++ P + G KL +R DD E + RL
Sbjct: 126 KLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEIVAHRL 185
Query: 174 ETFDQTIKPLLDYYDN 189
T++ T P++ ++ N
Sbjct: 186 NTYESTNSPIIQFFKN 201
>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional.
Length = 183
Score = 113 bits (285), Expect = 1e-31
Identities = 69/212 (32%), Positives = 107/212 (50%), Gaps = 38/212 (17%)
Query: 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYM 60
M LL L G PG GKGT ++R+ ++H++TGD+LRS +A + LG +A+ M
Sbjct: 1 MKQRLLFL-----GPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVM 55
Query: 61 NKGLLVPDDLMIDLVKNEVKDLKCN-YLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKE 119
N+G LV D L++ +V++++K L +LLDGFPRT QA A L P + + P E
Sbjct: 56 NRGELVSDALVLAIVESQLKALNSGGWLLDGFPRTVAQAEA-----LEP-LLEELKQPIE 109
Query: 120 VIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQ--RDDDKPEAIKKRLETFD 177
++ + LD D + E+L+ R DD I+ RLE +
Sbjct: 110 AVV--------------LLELD---------DAVLIERLLARGRADDNEAVIRNRLEVYR 146
Query: 178 QTIKPLLDYYDNREVLDTFTGN-TTDEIWPRI 208
+ PL+D+Y R +L + + + I RI
Sbjct: 147 EKTAPLIDHYRQRGLLQSVEAQGSIEAITERI 178
>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional.
Length = 186
Score = 112 bits (280), Expect = 6e-31
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 34/205 (16%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
M + +G PG GKGT + + + ++ I+TGDILR + T +G++AK YM+ G LV
Sbjct: 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLV 60
Query: 67 PDDLMIDLVKNEVKDLKC--NYLLDGFPRTYDQAMAL---FKN-HLSPNCVMHINVPKEV 120
PD ++I ++K+ +++ C +LLDGFPRT +QA AL KN S + +++ VP
Sbjct: 61 PDSVVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGE 120
Query: 121 IIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTI 180
++ RL R G R DD IK RL+ +++
Sbjct: 121 LLKRLLGRAE----------------IEG-----------RADDNEATIKNRLDNYNKKT 153
Query: 181 KPLLDYYDNREVLDTFTG-NTTDEI 204
PLLD+Y ++ L G + +E+
Sbjct: 154 LPLLDFYAAQKKLSQVNGVGSLEEV 178
>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family. This subfamily
of the adenylate kinase superfamily contains examples of
UMP-CMP kinase, as well as others proteins with unknown
specificity, some currently designated adenylate kinase.
All known members are eukaryotic.
Length = 183
Score = 110 bits (278), Expect = 1e-30
Identities = 57/207 (27%), Positives = 105/207 (50%), Gaps = 32/207 (15%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLM 71
++G PG GKGT ++I+++F H++ GD+LR+ I + G + + G +VP ++
Sbjct: 4 VLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVT 63
Query: 72 IDLVKNEVK-DLKCNYLLDGFPRTYDQAMALFK---NHLSPNCVMHINVPKEVIIDRLSK 127
+ L+KN ++ D +L+DGFPR + A K N ++ V+ + P+EV+I RL K
Sbjct: 64 VKLLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLK 123
Query: 128 RWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYY 187
R +SGRV DD E+IKKR T+++ P++++Y
Sbjct: 124 R--GQSSGRV-------------------------DDNIESIKKRFRTYNEQTLPVIEHY 156
Query: 188 DNREVLDTFTG-NTTDEIWPRIYEHLN 213
+N+ + + +E++ + +
Sbjct: 157 ENKGKVKEINAEGSVEEVFEDVEKIFA 183
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 110 bits (277), Expect = 4e-29
Identities = 66/204 (32%), Positives = 108/204 (52%), Gaps = 28/204 (13%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ +++G PG GKGT + R++ + + ++TGD+LR+ +A T +GLKAK+ M G LVP
Sbjct: 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVP 60
Query: 68 DDLMIDLVKN--EVKDLKCNYLLDGFPRTYDQAMA----LFKNHLSPNCVMHINVPKEVI 121
D++++ ++ + E D ++LDGFPRT QA A L L + V+ + V + +
Sbjct: 61 DEVVVGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGAL 120
Query: 122 IDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIK 181
+ R+ R A R GE++ R DD PE + KRL ++ +
Sbjct: 121 LARVETR---VAEMRA----------------RGEEV--RADDTPEVLAKRLASYRAQTE 159
Query: 182 PLLDYYDNREVLDTFTGNTT-DEI 204
PL+ YY + L T G T DE+
Sbjct: 160 PLVHYYSEKRKLLTVDGMMTIDEV 183
>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily.
Members of this family are adenylate kinase, EC 2.7.4.3.
This clade is found only in eukaryotes and includes
human adenylate kinase isozyme 1 (myokinase). Within the
adenylate kinase superfamily, this set appears
specifically closely related to a subfamily of
eukaryotic UMP-CMP kinases (TIGR01359), rather than to
the large clade of bacterial, archaeal, and eukaryotic
adenylate kinase family members in TIGR01351.
Length = 188
Score = 105 bits (264), Expect = 2e-28
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 31/206 (15%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLM 71
I+G PG GKGT +I++ + H++TGD+LR+ +A + G + + M G LVP D +
Sbjct: 8 IVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTV 67
Query: 72 IDLVKNEV---KDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128
+DL+K+ + +L+DG+PR Q + P V++ + ++ ++ RL KR
Sbjct: 68 LDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKR 127
Query: 129 WIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYD 188
SGRV DD + IKKRLET+ + +P++ YY+
Sbjct: 128 --AETSGRV-------------------------DDNEKTIKKRLETYYKATEPVIAYYE 160
Query: 189 NREVLDTFTGN-TTDEIWPRIYEHLN 213
+ L T D+++ ++ ++
Sbjct: 161 TKGKLRKINAEGTVDDVFLQVCTAID 186
>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional.
Length = 188
Score = 100 bits (251), Expect = 2e-26
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 33/194 (17%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
++ G P GKGT + R+++ + ++TGD+LR+ IA + LG + K M++G LV D++
Sbjct: 4 ILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEI 63
Query: 71 MIDLVKNEVKDLKC--NYLLDGFPRTYDQAMALFKNHLSPN----CVMHINVPKEVIIDR 124
+I L++ + + + + DGFPRT QA AL K S V+ + V E +I+R
Sbjct: 64 VIALIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIER 123
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLL 184
+ KR+ ++ G R DD PE RL+ ++ PLL
Sbjct: 124 IVKRF----------------EEQG-----------RPDDNPEVFVTRLDAYNAQTAPLL 156
Query: 185 DYYDNREVLDTFTG 198
YY + L G
Sbjct: 157 PYYAGQGKLTEVDG 170
>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional.
Length = 223
Score = 99.4 bits (248), Expect = 1e-25
Identities = 68/177 (38%), Positives = 93/177 (52%), Gaps = 22/177 (12%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
+I G G GKGT + + +++ HI +G I R HI T LG KAKEY+++G LVPDD+
Sbjct: 4 LIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDI 63
Query: 71 MIDLVKNEVK-DLKCNYLLDGFPRTYDQAM----ALFKNHLSPNCVMHINVPKEVIIDRL 125
I ++ +K D K +LLDGFPR QA AL K + + V+ I +P+EV +R+
Sbjct: 64 TIPMILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRI 123
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDIT---------GEKLIQRDDDKPE-AIKKR 172
R R+ D N P ID I G +L R DD+ E AI KR
Sbjct: 124 MGR-------RLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKR 173
>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 98.4 bits (245), Expect = 3e-25
Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 34/201 (16%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLM 71
++G PG GKGT +I++ F KH++ GD+LR IA N+ G + +G +VP ++
Sbjct: 48 VLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVT 107
Query: 72 IDLVKNEVKDLKCN-YLLDGFPRTYDQAMALFKN--HLSPNCVMHINVPKEVIIDRLSKR 128
+ L++ E++ N +L+DGFPRT + +A F+ PN V+ + P+E ++ R+ R
Sbjct: 108 VKLIQKEMESSDNNKFLIDGFPRTEENRIA-FERIIGAEPNVVLFFDCPEEEMVKRVLNR 166
Query: 129 WIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYD 188
GRV DD + IKKRL+ F+ P++DYY
Sbjct: 167 ----NQGRV-------------------------DDNIDTIKKRLKVFNALNLPVIDYYS 197
Query: 189 NREVLDTFTG-NTTDEIWPRI 208
+ L T T DEI+ ++
Sbjct: 198 KKGKLYTINAVGTVDEIFEQV 218
>gnl|CDD|218488 pfam05191, ADK_lid, Adenylate kinase, active site lid. Comparisons
of adenylate kinases have revealed a particular
divergence in the active site lid. In some organisms,
particularly the Gram-positive bacteria, residues in the
lid domain have been mutated to cysteines and these
cysteine residues are responsible for the binding of a
zinc ion. The bound zinc ion in the lid domain, is
clearly structurally homologous to Zinc-finger domains.
However, it is unclear whether the adenylate kinase lid
is a novel zinc-finger DNA/RNA binding domain, or that
the lid bound zinc serves a purely structural function.
Length = 36
Score = 69.1 bits (170), Expect = 3e-16
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 128 RWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDD 163
R + P+ GR+Y++ FN PK G+ D G +L+QRDD
Sbjct: 1 RRVCPSCGRIYHVKFNPPKVEGVCDKCGGELVQRDD 36
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 41.1 bits (96), Expect = 6e-05
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
+I G PG GK T++ ++ + + I+ D+LR GL + G L D+
Sbjct: 3 LITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREE-------GLAELD---DGELDDIDI 52
Query: 71 MIDLVKNEVKDL-KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRW 129
++L++ + +L K +++DG + + + V+ +++P RL KR
Sbjct: 53 DLELLEEILDELAKQEWVIDGVRESTLELRLEEADL-----VVFLDLPLPACRFRLLKRR 107
Query: 130 I 130
+
Sbjct: 108 L 108
>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins in
this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 42.0 bits (99), Expect = 6e-05
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
+ I G PG GK T++ + + ++K I+ GDI R +A +GL E++N P
Sbjct: 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRE-LAAK--MGLDLIEFLNYAEENP 57
Query: 68 D-DLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLS 126
+ D ID +E+ + N +L+ A + + + + + + P EV R++
Sbjct: 58 EIDKKIDRRIHEIALKEKNVVLES-----RLAGWIVREY--ADVKIWLKAPLEVRARRIA 110
Query: 127 KR 128
KR
Sbjct: 111 KR 112
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 41.5 bits (98), Expect = 7e-05
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
+ I G PG GK T++ + +H +K ++ G I R +A+ G+ +E+ P
Sbjct: 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFRE-MARE--RGMSLEEFSRYAEEDP 57
Query: 68 D-DLMID 73
+ D ID
Sbjct: 58 EIDKEID 64
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 40.6 bits (96), Expect = 2e-04
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD-D 69
I G PG GK T++ + + +KH++ G+I R +A+ G+ +E+ P+ D
Sbjct: 4 TISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRE-LAKE--RGMSLEEFNKYAEEDPEID 60
Query: 70 LMIDLVKNEVKDLKCNYLLDG 90
ID + E+ + + N +L+G
Sbjct: 61 KEIDRRQLEIAEKEDNVVLEG 81
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 37.1 bits (87), Expect = 0.002
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDI 41
I G G GK T++ + + ++ TG I
Sbjct: 4 IDGPAGSGKSTVAKLLAKKLGLPYLDTGGI 33
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 36.1 bits (84), Expect = 0.005
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45
V++G G GK T+ + + I GD L
Sbjct: 3 VVMGVSGSGKSTVGKALAERLGAPFI-DGDDLHPP 36
>gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed.
Length = 394
Score = 33.0 bits (76), Expect = 0.11
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFP 92
++NK LV D+ +++LV+ EV++L Y FP
Sbjct: 134 FLNKVDLVDDEELLELVEMEVRELLSEY---DFP 164
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 32.4 bits (75), Expect = 0.12
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 7 MLKAVII---GAPGCGKGTISSRIIDHFNVKHIATGDILRS 44
M+KA++I G G GKGT++ + ++ TG + R+
Sbjct: 1 MMKAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain only
a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 31.9 bits (73), Expect = 0.13
Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
+++G PG GK T + R++ +++ D LR + + G Y +
Sbjct: 3 LMVGLPGSGKSTFARRLLRELGAVVLSS-DTLRKRLRGD---GPPDISYYARASGRVYQR 58
Query: 71 MIDLVKNEVKDLKCNYLLDG---FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127
+++L + E ++D + + L + + +P ++++ P+EV+ +R ++
Sbjct: 59 LLELAR-EALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRERNAQ 117
Query: 128 R 128
R
Sbjct: 118 R 118
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 31.3 bits (71), Expect = 0.17
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 16/122 (13%)
Query: 11 VIIGAPGCGKGTISSRI--IDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD 68
+I G PG GK T++ + ++ +A + L + + T K +
Sbjct: 2 LITGTPGSGKTTLAKELAERLGDVLRDLAKENGLVLELDEEITDESKRLDEDKL-----A 56
Query: 69 DLMIDLVKNEVKDLKC-NYLLDGFPRTYDQAMALFKNHLSPNCVM-HINVPKEVIIDRLS 126
L+ L K + + N ++DG A + + V + E +++RL
Sbjct: 57 KLLDKLEKIIEELAEGENVIIDGHL-------AELELERFKDLVFVVLRADPEELLERLK 109
Query: 127 KR 128
KR
Sbjct: 110 KR 111
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and
metabolism].
Length = 218
Score = 31.5 bits (72), Expect = 0.24
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIA 37
I G G GK T++ + + V+ +
Sbjct: 13 IAGGSGSGKTTVAKELSEQLGVEKVV 38
>gnl|CDD|224985 COG2074, COG2074, 2-phosphoglycerate kinase [Carbohydrate transport
and metabolism].
Length = 299
Score = 31.6 bits (72), Expect = 0.32
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILR 43
M L++L I GA G GK TI+ + ++ + + D +R
Sbjct: 86 MKRPLIIL---IGGASGVGKSTIAGELARRLGIRSVISTDSIR 125
>gnl|CDD|233355 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant
glucokinase family. This model represents a subfamily
of proteins that includes thermoresistant and
thermosensitve isozymes of gluconate kinase
(gluconokinase) in E. coli and other related proteins;
members of this family are often named by similarity to
the thermostable isozyme. These proteins show homology
to shikimate kinases and adenylate kinases but not to
gluconate kinases from the FGGY family of carbohydrate
kinases.
Length = 163
Score = 30.8 bits (70), Expect = 0.33
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDD 69
V++G G GK TI+S + K I GD L H A N E M+ G+ + DD
Sbjct: 2 VLMGVAGSGKSTIASALAHRLGAKFI-EGDDL--HPAANI-------EKMSAGIPLNDD 50
>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small
guanosine triphosphatases (GTPases). Rab GTPases form
the largest family within the Ras superfamily. There
are at least 60 Rab genes in the human genome, and a
number of Rab GTPases are conserved from yeast to
humans. Rab GTPases are small, monomeric proteins that
function as molecular switches to regulate vesicle
trafficking pathways. The different Rab GTPases are
localized to the cytosolic face of specific
intracellular membranes, where they regulate distinct
steps in membrane traffic pathways. In the GTP-bound
form, Rab GTPases recruit specific sets of effector
proteins onto membranes. Through their effectors, Rab
GTPases regulate vesicle formation, actin- and
tubulin-dependent vesicle movement, and membrane
fusion. GTPase activating proteins (GAPs) interact with
GTP-bound Rab and accelerate the hydrolysis of GTP to
GDP. Guanine nucleotide exchange factors (GEFs)
interact with GDP-bound Rabs to promote the formation
of the GTP-bound state. Rabs are further regulated by
guanine nucleotide dissociation inhibitors (GDIs),
which mask C-terminal lipid binding and promote
cytosolic localization. While most unicellular
organisms possess 5-20 Rab members, several have been
found to possess 60 or more Rabs; for many of these Rab
isoforms, homologous proteins are not found in other
organisms. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab
proteins. Since crystal structures often lack
C-terminal residues, the lipid modification site is not
available for annotation in many of the CDs in the
hierarchy, but is included where possible.
Length = 159
Score = 30.1 bits (69), Expect = 0.46
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 8 LKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
K V+IG G GK ++ R +D F+ + +T
Sbjct: 1 FKIVLIGDSGVGKTSLLLRFVDNKFSENYKST 32
>gnl|CDD|215692 pfam00071, Ras, Ras family. Includes sub-families Ras, Rab, Rac,
Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with
GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025,
pfam00063. As regards Rab GTPases, these are important
regulators of vesicle formation, motility and fusion.
They share a fold in common with all Ras GTPases: this
is a six-stranded beta-sheet surrounded by five
alpha-helices.
Length = 162
Score = 30.2 bits (69), Expect = 0.53
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
K V++G G GK ++ R + F ++I T
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPT 31
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 30.6 bits (70), Expect = 0.53
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 7 MLKAVII---GAPGCGKGTISSRIIDHFNVKHIATGDILR 43
M A+II G G GK T++ + + ++ TG + R
Sbjct: 1 MKAAIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYR 40
>gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed.
Length = 396
Score = 30.5 bits (70), Expect = 0.73
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFP 92
++NK +V D+ +++LV+ EV++L Y FP
Sbjct: 134 FLNKCDMVDDEELLELVEMEVRELLSKY---DFP 164
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 29.8 bits (68), Expect = 0.81
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 156 EKLIQRDDDKPEAIKKRLET 175
+L +R D E I++RL
Sbjct: 127 RRLRKRGTDSEEVIERRLAK 146
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 29.6 bits (67), Expect = 1.1
Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 27/146 (18%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL-L 65
ML + G G GK T+ ++I+ I D+ R + + E GL +
Sbjct: 2 MLIIGLTGGIGSGKSTV-AKILAELGFPVIDADDVAREVVEPGGEALQEIAER--FGLEI 58
Query: 66 VPDDLMID------LVKNEVKDLKC-NYLLDGFPRTYDQAMA--------------LFKN 104
+ +D +D V N+ + +L R + + LF+
Sbjct: 59 LDEDGGLDRRKLREKVFNDPEARLKLEKILHPLIRAEIKVVIDGARSPYVVLEIPLLFEA 118
Query: 105 HLSPNC--VMHINVPKEVIIDRLSKR 128
V+ + P E+ ++RL KR
Sbjct: 119 GGEKYFDKVIVVYAPPEIRLERLMKR 144
>gnl|CDD|237066 PRK12338, PRK12338, hypothetical protein; Provisional.
Length = 319
Score = 29.7 bits (67), Expect = 1.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 7 MLKAVII---GAPGCGKGTISSRIIDHFNVKHIATGDILR 43
M K +I A G GK TI+S + N+KH+ D +R
Sbjct: 1 MRKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIR 40
>gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins.
EF-Tu subfamily. This subfamily includes orthologs of
translation elongation factor EF-Tu in bacteria,
mitochondria, and chloroplasts. It is one of several
GTP-binding translation factors found in the larger
family of GTP-binding elongation factors. The eukaryotic
counterpart, eukaryotic translation elongation factor 1
(eEF-1 alpha), is excluded from this family. EF-Tu is
one of the most abundant proteins in bacteria, as well
as, one of the most highly conserved, and in a number of
species the gene is duplicated with identical function.
When bound to GTP, EF-Tu can form a complex with any
(correctly) aminoacylated tRNA except those for
initiation and for selenocysteine, in which case EF-Tu
is replaced by other factors. Transfer RNA is carried to
the ribosome in these complexes for protein translation.
Length = 195
Score = 29.1 bits (66), Expect = 1.4
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDG 90
++NK +V D+ +++LV+ EV++L Y DG
Sbjct: 124 FLNKADMVDDEELLELVEMEVRELLSKYGFDG 155
>gnl|CDD|224847 COG1936, COG1936, Predicted nucleotide kinase (related to CMP and
AMP kinases) [Nucleotide transport and metabolism].
Length = 180
Score = 28.8 bits (65), Expect = 1.8
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45
I G PG GK T+ + K I ++ + +
Sbjct: 2 LIAITGTPGVGKTTVCKL-LRELGYKVIELNELAKEN 37
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They
belong to the subfamily C of the ATP-binding cassette
(ABC) superfamily of transport proteins. The ABCC
subfamily contains transporters with a diverse
functional spectrum that includes ion transport, cell
surface receptor, and toxin secretion activities. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains, each composed of six
transmembrane (TM) helices, and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 171
Score = 28.5 bits (65), Expect = 1.8
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 16/59 (27%)
Query: 9 KAVIIGAPGCGKGTISS-----------RI-IDHFNVKHIATGDILRSHIA---QNTTL 52
K I+G G GK T+ I ID +++ + LR +IA Q+ L
Sbjct: 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLES-LRKNIAYVPQDPFL 87
>gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed.
Length = 396
Score = 29.0 bits (66), Expect = 2.2
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFP 92
++NK +V D+ +++LV+ EV++L Y FP
Sbjct: 134 FLNKCDMVDDEELLELVEMEVRELLSKY---DFP 164
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of
several bacterial zeta toxin proteins. Zeta toxin is
thought to be part of a postregulational killing system
in bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 28.4 bits (64), Expect = 2.6
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 9 KAVII-GAPGCGKGTISSRIIDHF---NVKHIATGDILRSHIAQ 48
AV++ G PG GK ++ +++ NV I D LR++
Sbjct: 13 VAVLLGGQPGAGKTELARALLEELGGGNVVRI-DPDELRTYHPD 55
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is
a important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 27.9 bits (63), Expect = 2.6
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHI 36
V+IG G GK T+ + + +
Sbjct: 3 VLIGMMGAGKTTVGRLLAKALGLPFV 28
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 28.2 bits (64), Expect = 2.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 7 MLKAVII---GAPGCGKGTISSRIIDHFNVKHIA 37
M K +II G G GK T++S I + + IA
Sbjct: 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIA 36
>gnl|CDD|225364 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 28.4 bits (64), Expect = 3.0
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 2 LNTLLMLKAVII---GAPGCGKGTISSRIIDHFN---VKHIAT 38
+ L +I G G GK T + +ID+ N KHI T
Sbjct: 117 VRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILT 159
>gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors
[Translation, ribosomal structure and biogenesis].
Length = 394
Score = 28.4 bits (64), Expect = 3.0
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFP 92
++NK +V D+ +++LV+ EV++L Y GFP
Sbjct: 134 FLNKVDMVDDEELLELVEMEVRELLSEY---GFP 164
>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats.
Length = 101
Score = 27.3 bits (61), Expect = 3.2
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 144 APKKPGIDDI--TGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNRE 191
+ ++ + GE+LI+ E I++RLE ++ + L + + R
Sbjct: 48 EAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELAEERR 97
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 27.5 bits (62), Expect = 3.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKH 35
V+ G G GK T+ R+++ F+
Sbjct: 3 VLSGPSGVGKSTLLKRLLEEFDPNF 27
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 27.9 bits (63), Expect = 3.3
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 11 VIIGAPGCGKGTISSRI 27
VI G P GK T+ +
Sbjct: 3 VITGGPSTGKTTLLEAL 19
>gnl|CDD|105560 PRK12339, PRK12339, 2-phosphoglycerate kinase; Provisional.
Length = 197
Score = 27.8 bits (62), Expect = 3.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILR 43
I G PG GK +IS I H + + +GD LR
Sbjct: 7 FIGGIPGVGKTSISGYIARHRAIDIVLSGDYLR 39
>gnl|CDD|233418 TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This
model describes a family similar to RecD, the
exodeoxyribonuclease V alpha chain of TIGR01447. Members
of this family, however, are not found in a context of
RecB and RecC and are longer by about 200 amino acids at
the amino end. Chlamydia muridarum has both a member of
this family and a RecD [Unknown function, Enzymes of
unknown specificity].
Length = 720
Score = 28.2 bits (63), Expect = 4.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 10 AVIIGAPGCGKGTISSRIIDHF 31
++ G PG GK TI+ II+
Sbjct: 341 VILTGGPGTGKTTITRAIIELA 362
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 27.3 bits (60), Expect = 4.1
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKH-----IATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
I+G PG GK T++ + I DIL + Q + + K+ G L
Sbjct: 7 IVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELR 66
Query: 67 PDDLMIDLVKNEVKDLKCNYLLD 89
+ L + D+ +LD
Sbjct: 67 LRLA-LALARKLKPDV---LILD 85
>gnl|CDD|234914 PRK01184, PRK01184, hypothetical protein; Provisional.
Length = 184
Score = 27.6 bits (62), Expect = 4.3
Identities = 34/166 (20%), Positives = 67/166 (40%), Gaps = 42/166 (25%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQN------TTLG-----LKAKEY 59
++G PG GKG S+I + + GD++R + + +G L+ +
Sbjct: 5 GVVGMPGSGKGEF-SKIAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELG 63
Query: 60 MNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPN-CVMHINVPK 118
M+ + ++ + ++ ++DG R + + F+ + ++ I+ P
Sbjct: 64 MD----AVAKRTVPKIREKGDEV---VVIDGV-RGDAE-VEYFRKEFPEDFILIAIHAPP 114
Query: 119 EVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDI-TGEKLIQRDD 163
EV +RL KR GR DD + E+L +RD+
Sbjct: 115 EVRFERLKKR------GRS-------------DDPKSWEELEERDE 141
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins
[General function prediction only].
Length = 219
Score = 27.6 bits (61), Expect = 4.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDH 30
K V++G G GK T+ +R++
Sbjct: 6 FKIVVLGDGGVGKTTLLNRLVGD 28
>gnl|CDD|223775 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 27.6 bits (62), Expect = 4.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVK 34
+ V+IG G GK TI + N+
Sbjct: 2 NMNIVLIGFMGAGKSTIGRALAKALNLP 29
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 28.1 bits (63), Expect = 5.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 11 VIIGAPGCGKGTI 23
++IG PG GK T+
Sbjct: 115 LVIGPPGSGKTTL 127
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 236
Score = 27.6 bits (62), Expect = 5.6
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 16/59 (27%)
Query: 9 KAVIIGAPGCGKGTI-----------SSRI-IDHFNVKHIATGDILRSHIA---QNTTL 52
K I+G G GK TI S I ID +++ + T D LR I Q+T L
Sbjct: 29 KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV-TLDSLRRAIGVVPQDTVL 86
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 27.0 bits (61), Expect = 6.8
Identities = 5/23 (21%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 11 VIIGAP-GCGKGTISSRIIDHFN 32
+++ P G GK T+ +++
Sbjct: 8 IVLSGPSGAGKSTLVKALLERDP 30
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 154
Score = 26.8 bits (59), Expect = 7.2
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45
++ G G GK ++ +++ V R+
Sbjct: 28 LLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNP 62
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length
MRP-type transporter 1). NFT1 belongs to the MRP
(multidrug resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 27.0 bits (60), Expect = 7.4
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 12 IIGAPGCGKGTISSRI------------IDHFNVKHIATGDILRSH--IAQNTTL 52
I+G G GK T+ + ID ++ I D+ S I Q+ TL
Sbjct: 39 IVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTL 93
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyzes the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling
inter- mediates into the (bacterio)chlorophyll branch
in response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 27.1 bits (61), Expect = 7.5
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
Query: 5 LLMLKAVIIGAPGCGKGTISSRI 27
LLM IG PG GK ++ R+
Sbjct: 25 LLM-----IGPPGSGKTMLAKRL 42
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 27.5 bits (62), Expect = 7.6
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 157 KLIQRDDDKPEAIKKRLETFDQTIKPLLDYY--DNREVLDTFTGNTTDEIW 205
K I ++ I KR+ ++ + L++ ++ L F GN D W
Sbjct: 271 KQIDELVEQLRDINKRVRGQERELLRLVERLKMPRKDFLKLFQGNELDITW 321
>gnl|CDD|224533 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide
transport and metabolism].
Length = 179
Score = 26.9 bits (60), Expect = 7.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 6 LMLKAVIIGAPGCGKGTISSRIID 29
+ +K I G PG GK T+ +I +
Sbjct: 4 MAMKIFITGRPGVGKTTLVLKIAE 27
>gnl|CDD|236943 PRK11638, PRK11638, lipopolysaccharide biosynthesis protein WzzE;
Provisional.
Length = 342
Score = 27.3 bits (61), Expect = 7.9
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 172 RLETFDQTIKPL--LDYYDNREVLDTF-TGNTTDEIWPRIYEHLNIRIP--PLKRLEPR 225
RLE Q + P LDY NR +L T G T D + + Y +L R P P+KR PR
Sbjct: 261 RLENL-QAVGPAFDLDYDQNRAMLATLNVGPTLDPRF-QTYRYL--RTPEEPVKRDSPR 315
>gnl|CDD|233097 TIGR00705, SppA_67K, signal peptide peptidase SppA, 67K type. This
model represents the signal peptide peptidase A (SppA,
protease IV) as found in E. coli, Treponema pallidum,
Mycobacterium leprae, and several other species, in
which it has a molecular mass around 67 kDa and a
duplication such that the N-terminal half shares
extensive homology with the C-terminal half. This enzyme
was shown in E. coli to form homotetramers. E. coli
SohB, which is most closely homologous to the C-terminal
duplication of SppA, is predicted to perform a similar
function of small peptide degradation, but in the
periplasm. Many prokaryotes have a single SppA/SohB
homolog that may perform the function of either or both
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 584
Score = 27.1 bits (60), Expect = 8.3
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 169 IKKRLETFDQTIKPLLDYYDNREVLDTFTGNTTDEIW 205
I L F + KP+ Y N + + DEI
Sbjct: 115 IGSALSEFKDSGKPVYAYGTNYSQGQYYLASFADEII 151
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 26.9 bits (60), Expect = 8.4
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 12 IIGAPGCGKGTISSRIIDHF---NVKHIATGD 40
+ G GCGK T + D V I T D
Sbjct: 13 VAGDSGCGKTTFLRGLADLLGEELVTVICTDD 44
>gnl|CDD|190301 pfam02408, CUB_2, CUB-like domain. This is a family of
hypothetical C. elegans proteins. The aligned region has
no known function nor do any of the proteins which
possess it. However, this domain is related to the CUB
domain.
Length = 119
Score = 26.2 bits (58), Expect = 8.7
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 91 FPRTYDQAMALFKNHLSPN--CVMHINVPK 118
+P T++ + + N C +INVPK
Sbjct: 24 YPSTWNGSANPPQ--FPANQNCSWNINVPK 51
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the
ATP synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor
Rho.
Length = 213
Score = 26.7 bits (60), Expect = 9.4
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 9 KAVIIGAPGCGKGTISSRIIDHFNVKHI 36
+ I G G GK + I + +
Sbjct: 17 RIGIFGGSGTGKTVLLGMIARNAKADVV 44
>gnl|CDD|145298 pfam02046, COX6A, Cytochrome c oxidase subunit VIa.
Length = 116
Score = 25.8 bits (57), Expect = 9.6
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 201 TDEIWPRIYEHLNIR 215
D YE+ NIR
Sbjct: 79 PDREEFVEYEYQNIR 93
>gnl|CDD|189013 cd09606, M3B_PepF_1, Peptidase family M3B Oligopeptidase F (PepF).
Peptidase family M3B Oligopeptidase F (PepF;
Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and
includes oligoendopeptidase F from Lactococcus lactis.
This enzyme hydrolyzes peptides containing between 7 and
17 amino acids with fairly broad specificity. The PepF
gene is duplicated in L. lactis on the plasmid that
bears it, while a shortened second copy is found in
Bacillus subtilis. Most bacterial PepFs are cytoplasmic
endopeptidases; however, the PepF Bacillus
amyloliquefaciens oligopeptidase is a secreted protein
and may facilitate the process of sporulation.
Specifically, the yjbG gene encoding the homolog of the
PepF1 and PepF2 oligoendopeptidases of Lactococcus
lactis has been identified in Bacillus subtilis as an
inhibitor of sporulation initiation when over expressed
from a multicopy plasmid.
Length = 546
Score = 27.1 bits (61), Expect = 9.8
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 156 EKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNREVLDT--------FTGNTTDEIWPR 207
E L +R D +K ++ ++ L ++ + R LD T +TTDE + +
Sbjct: 7 EALKERFIDLIAKLKNA-KSAEELEAWLKEWSELRRELDEMATLAYIRHTIDTTDEFYEK 65
Query: 208 IYEHLNIRIPPLKRLE 223
Y++ + P LK LE
Sbjct: 66 EYDYFDEIEPLLKELE 81
>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 27.1 bits (60), Expect = 10.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILR 43
M+ I G G GK ++S + + ++ TG + R
Sbjct: 1 MIIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYR 37
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.422
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,234,980
Number of extensions: 1192733
Number of successful extensions: 1671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1618
Number of HSP's successfully gapped: 128
Length of query: 228
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 134
Effective length of database: 6,768,326
Effective search space: 906955684
Effective search space used: 906955684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)