RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6801
(228 letters)
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 321 bits (826), Expect = e-113
Identities = 101/218 (46%), Positives = 149/218 (68%), Gaps = 2/218 (0%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
+L+AVI+G PG GKGT+ RI +F ++H+++G LR +I +T +G AK+Y+ K LLV
Sbjct: 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLV 86
Query: 67 PDDLMIDLVKNEVKDLKCN-YLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
PD ++ L+ +E+++ + +LLDGFPRT QA AL + V+ +N+P E + DRL
Sbjct: 87 PDHVITRLMMSELENRRGQHWLLDGFPRTLGQAEAL-DKICEVDLVISLNIPFETLKDRL 145
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
S+RWIHP SGRVYNLDFN P GIDD+TGE L+Q++DDKPEA+ RL + KP+++
Sbjct: 146 SRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIE 205
Query: 186 YYDNREVLDTFTGNTTDEIWPRIYEHLNIRIPPLKRLE 223
Y +R VL F+G T++IWP +Y + +I P++ E
Sbjct: 206 LYKSRGVLHQFSGTETNKIWPYVYTLFSNKITPIQSKE 243
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 317 bits (814), Expect = e-111
Identities = 111/215 (51%), Positives = 158/215 (73%), Gaps = 2/215 (0%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
+L+AVI+GAPG GKGT+SSRI HF +KH+++GD+LR ++ + T +G+ AK ++++G L+
Sbjct: 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLI 66
Query: 67 PDDLMIDLVKNEVKDLKCN-YLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
PDD+M L +E+K+L +LLDGFPRT QA AL + V+++NVP EVI RL
Sbjct: 67 PDDVMTRLALHELKNLTQYSWLLDGFPRTLPQAEAL-DRAYQIDTVINLNVPFEVIKQRL 125
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
+ RWIHPASGRVYN++FN PK GIDD+TGE LIQR+DDKPE + KRL+ ++ KP+L+
Sbjct: 126 TARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLE 185
Query: 186 YYDNREVLDTFTGNTTDEIWPRIYEHLNIRIPPLK 220
YY + VL+TF+G T++IWP +Y L ++P
Sbjct: 186 YYQKKGVLETFSGTETNKIWPYVYAFLQTKVPQRS 220
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 301 bits (772), Expect = e-104
Identities = 83/214 (38%), Positives = 124/214 (57%), Gaps = 7/214 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
+ + +GAPG GKGT S + H++TGD+LR + T LGLK K +N+G LV
Sbjct: 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLV 88
Query: 67 PDDLMIDLVKNEVKDLKCN--YLLDGFPRTYDQAMAL----FKNHLSPNCVMHINVPKEV 120
D +++ LV ++K +C ++LDG+PR QA L KN + V + NVP EV
Sbjct: 89 DDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEV 148
Query: 121 IIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTI 180
+++R+S R IH SGR+Y+ FN PK P DD+T E LIQR+DD + +KKRL F
Sbjct: 149 LVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSET 208
Query: 181 KPLLDYYDNREVLDTFTGN-TTDEIWPRIYEHLN 213
PL+ YY N+ +L +++ +I +H++
Sbjct: 209 SPLISYYKNKNLLINLDATQPANDLEKKISQHID 242
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 296 bits (761), Expect = e-103
Identities = 82/213 (38%), Positives = 123/213 (57%), Gaps = 7/213 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
++IGAPG GKGT I + + H++TGD+LR I T +GL+AK + G V
Sbjct: 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFV 64
Query: 67 PDDLMIDLVKNEVKDLKCN--YLLDGFPRTYDQAMAL----FKNHLSPNCVMHINVPKEV 120
D++++ LVK + C ++LDGFPRT QA L + S V++ +
Sbjct: 65 GDEIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSE 124
Query: 121 IIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTI 180
II+R+S R HPASGR+Y++ +N PK+PGIDD+TGE L+ RDDD EA+K RL+ F +
Sbjct: 125 IIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQT 184
Query: 181 KPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHL 212
PL+ +Y++ +L E+ +I + L
Sbjct: 185 APLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 296 bits (760), Expect = e-103
Identities = 93/219 (42%), Positives = 134/219 (61%), Gaps = 14/219 (6%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ +++GAPG GKGT ++ I + F + I+TGD+LR+ + T LG++AK YM++G LVP
Sbjct: 9 MRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVP 68
Query: 68 DDLMIDLVKNEVKDLKCN--YLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
D L+I LVK +K+ C YL DGFPRT QA A+ + ++ + V+ I+VP II+R+
Sbjct: 69 DSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERM 128
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
S R HPASGR Y++ FN PK G DD+TGE L+QRDDDK E +KKRL+ ++ KPL+
Sbjct: 129 SGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLIT 188
Query: 186 YYDNREVLDTFTGNTT------------DEIWPRIYEHL 212
YY + G +EI R+
Sbjct: 189 YYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQ 227
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 294 bits (756), Expect = e-102
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 7/214 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
++AV++G PG GKGT + ++ +F V H+ATGD+LR+ +A + LG K K M+ G LV
Sbjct: 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLV 75
Query: 67 PDDLMIDLVKNEVKDLKCN--YLLDGFPRTYDQAMAL----FKNHLSPNCVMHINVPKEV 120
D+++++L++ ++ C +LLDGFPRT QA L K + V+ ++P +
Sbjct: 76 SDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 135
Query: 121 IIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTI 180
+I R++ R IHP SGR Y+ +FN PK+P DDITGE LI+R DD +A+K RLE +
Sbjct: 136 LIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQT 195
Query: 181 KPLLDYYDNREVLDTFTGN-TTDEIWPRIYEHLN 213
PL++YY R + + T D ++ I +
Sbjct: 196 TPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 229
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 292 bits (751), Expect = e-102
Identities = 80/213 (37%), Positives = 125/213 (58%), Gaps = 8/213 (3%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ +++GAP GKGT + I++ + + I+TGD+LR+ + + LG +AK+ M+ G LV
Sbjct: 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 68 DDLMIDLVKNEVKDLKCN--YLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
D+L+I LVK + C +LLDGFPRT QA A+ + ++ + V+ +VP E+I+DR+
Sbjct: 61 DELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI 120
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
R +H SGRVY++ FN PK G DD+TGE+L R DD+ E ++KRL + Q PL+
Sbjct: 121 VGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIG 180
Query: 186 YYDNR-----EVLDTFTGNTT-DEIWPRIYEHL 212
YY G E+ + + L
Sbjct: 181 YYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 292 bits (749), Expect = e-101
Identities = 82/214 (38%), Positives = 126/214 (58%), Gaps = 8/214 (3%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
++ V+IG PG GKGT + + + F+ H+ATGD+LRS IA+ T LGL+AK+ M++G LV
Sbjct: 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 68 DDLMIDLVKN---EVKDLKCNYLLDGFPRTYDQAMAL----FKNHLSPNCVMHINVPKEV 120
DD+M++++K+ K ++LDGFPRT QA L + + + V E+
Sbjct: 65 DDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDEL 124
Query: 121 IIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTI 180
++ R++ R IHPASGR Y+ FN PK+ DD+TGE L+QR DD +A+KKRL +
Sbjct: 125 LVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQT 184
Query: 181 KPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213
+P++D+Y + + +W I L
Sbjct: 185 EPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 280 bits (718), Expect = 8e-97
Identities = 84/212 (39%), Positives = 122/212 (57%), Gaps = 7/212 (3%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
+ V++G PG GKGT + +II+ + + HI+TGD+ R+ I T LGLKAK +M++G LVP
Sbjct: 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP 60
Query: 68 DDLMIDLVKNEVKDLKCN--YLLDGFPRTYDQAMAL----FKNHLSPNCVMHINVPKEVI 121
D++ I +V + C +LLDGFPRT QA AL + V++I V +E +
Sbjct: 61 DEVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEEL 120
Query: 122 IDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIK 181
+ RL+ RWI G Y+ FN P GI D G +L QR DDKPE +K RL+ + +
Sbjct: 121 MKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQ 180
Query: 182 PLLDYYDNREVLDTFTGN-TTDEIWPRIYEHL 212
PLLD+Y + VL G +++ I + L
Sbjct: 181 PLLDFYSQKGVLKDIDGQQDIKKVFVDINDLL 212
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 278 bits (714), Expect = 5e-96
Identities = 85/212 (40%), Positives = 124/212 (58%), Gaps = 7/212 (3%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
+ V++G PG GKGT RI++ + + HI+TGD+ R+ + + T LGL+AK Y++KG LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 68 DDLMIDLVKNEVKDLKCN--YLLDGFPRTYDQAMAL----FKNHLSPNCVMHINVPKEVI 121
D++ I +VK + C +LLDGFPRT QA AL + + V++I V K+V+
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVL 120
Query: 122 IDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIK 181
++RL+ R I G Y+L FN PK PGI D G +L QR DD E + KRLE +
Sbjct: 121 MERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTA 180
Query: 182 PLLDYYDNREVLDTFTGN-TTDEIWPRIYEHL 212
PLLD+YD + L G +++ + L
Sbjct: 181 PLLDFYDEKGYLVNVNGQQDIQDVYADLKVLL 212
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 272 bits (698), Expect = 1e-93
Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
LK +I GAP GKGT I + + HI+ GD+LR+ IA + G +AKE+M KG LV
Sbjct: 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLV 64
Query: 67 PDDLMIDLVKNEVKDLKC---NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIID 123
PD++++++VK ++ +LLDG+PR+Y QAMAL + P+ + ++VP E++++
Sbjct: 65 PDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVE 124
Query: 124 RLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPL 183
R+ R + P +G++Y+L ++ P+ ++ +L QR DD E +K RLET+ Q I+ L
Sbjct: 125 RVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEKVKLRLETYYQNIESL 180
Query: 184 LDYYDNREVLDTFTGN-TTDEIWPRIYEHLNIRIPPLKRLEP 224
L Y ++ G+ T D ++ +I E L + +
Sbjct: 181 LSTY--ENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVS 220
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 250 bits (642), Expect = 3e-85
Identities = 88/207 (42%), Positives = 123/207 (59%), Gaps = 13/207 (6%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V +G PG GKGT + R+ HI+TGDILR + + T LG KAKEYM +G LVPDDL
Sbjct: 4 VFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDL 63
Query: 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMAL----FKNHLSPNCVMHINVPKEVIIDRLS 126
+I L++ N + DGFPRT QA AL K L + V+ VP EV+I+RLS
Sbjct: 64 IIALIEEVFPKHG-NVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLS 122
Query: 127 KRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDY 186
R I+P +G VY++ +N P G K+IQR+DDKPE IKKRLE + + PL++Y
Sbjct: 123 GRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYREQTAPLIEY 175
Query: 187 YDNREVLDTFTGN-TTDEIWPRIYEHL 212
Y + +L + +E++ ++ E +
Sbjct: 176 YKKKGILRIIDASKPVEEVYRQVLEVI 202
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 242 bits (619), Expect = 1e-81
Identities = 74/222 (33%), Positives = 107/222 (48%), Gaps = 17/222 (7%)
Query: 8 LKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
+ +I G G GKGT + + D +++ HI +G I R HI T LG KAKE++++G LVP
Sbjct: 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 68 DDLMIDLVKNEVK-DLKCNYLLDGFPRTYDQAMAL----FKNHLSPNCVMHINVPKEVII 122
DD+ I +V ++ K +LLDGFPR QA L + + N V+ I +P+EV
Sbjct: 61 DDITIPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 123 DRLSKRWIHPASGRVYNLDFNAPKKP--GIDDITGEKLIQRDDDKPE-AIKKRLETFDQT 179
+R+ R I + N F KP + + G L R DD+ E AI KR + + T
Sbjct: 121 NRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNT 180
Query: 180 IKPLL---DYYDNR-----EVLDTFTGNTT-DEIWPRIYEHL 212
+ L YY N V G + D I + L
Sbjct: 181 VDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
nucleotide-binding, transferase, structural genomics;
1.80A {Thermus thermophilus}
Length = 186
Score = 201 bits (515), Expect = 2e-66
Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 35/213 (16%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
+ +G PG GKGT +SR+ K ++TGDILR H+A+ T LG + + M +G LV
Sbjct: 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLV 63
Query: 67 PDDLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMAL----FKNHLSPNCVMHINVPKEVII 122
PDDL+++L++ E+ + + DGFPRT QA AL + V+ + VP+E ++
Sbjct: 64 PDDLILELIREELAE---RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELV 120
Query: 123 DRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKP 182
R+ +R +L R DD E +++RLE + + +P
Sbjct: 121 RRILRR---------------------------AELEGRSDDNEETVRRRLEVYREKTEP 153
Query: 183 LLDYYDNREVLDTFTGNTT-DEIWPRIYEHLNI 214
L+ YY+ R VL G T DE++ RI L I
Sbjct: 154 LVGYYEARGVLKRVDGLGTPDEVYARIRAALGI 186
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 195 bits (499), Expect = 1e-63
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 40/219 (18%)
Query: 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYM 60
++ ++ +++G PG GKGT + ++ + + I+TG++ R +I + T LG++AK Y+
Sbjct: 14 LVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYL 73
Query: 61 NKGLLVPDDLMIDLVKNEVKDLKCN--YLLDGFPRTYDQAMALF----KNHLSPNCVMHI 114
+ G LVP DL +LV + + + ++LDG+PR+ +QA AL + + V+
Sbjct: 74 DAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEF 133
Query: 115 NVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLE 174
V +EV+++RL R R DD + I R++
Sbjct: 134 RVSEEVLLERLKGR-------------------------------GRADDTDDVILNRMK 162
Query: 175 TFDQTIKPLLDYYDNREVLDTFTGN-TTDEIWPRIYEHL 212
+ PLL+YY R+ L T T DE++ R L
Sbjct: 163 VYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRAL 199
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 195 bits (497), Expect = 2e-63
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 31/207 (14%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
++G PG GKGT +I+ + H++TGD+LRS ++ + G K E M KG LVP +
Sbjct: 13 FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLET 72
Query: 71 MIDLVKNEVK---DLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127
++D++++ + + +L+DG+PR Q + P +++++ E + RL K
Sbjct: 73 VLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLK 132
Query: 128 RWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYY 187
R + R DD E IKKRLET+ + +P++ +Y
Sbjct: 133 R---------------------------GETSGRVDDNEETIKKRLETYYKATEPVIAFY 165
Query: 188 DNREVLDTFTGNTT-DEIWPRIYEHLN 213
+ R ++ + D ++ ++ HL+
Sbjct: 166 EKRGIVRKVNAEGSVDSVFSQVCTHLD 192
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 193 bits (492), Expect = 1e-62
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 32/207 (15%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
++G PG GKGT + I+ F H++ GD+LR + G + G +VP +
Sbjct: 10 FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV 69
Query: 71 MIDLVKNEVKDLKC-NYLLDGFPRTYDQAMAL---FKNHLSPNCVMHINVPKEVIIDRLS 126
+ L+KN + + N+L+DGFPR + + K+ + V+ + P+EV+ RL
Sbjct: 70 TVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLL 129
Query: 127 KRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDY 186
KR + R DD E+IKKR TF+ K ++D+
Sbjct: 130 KR---------------------------GESSGRSDDNIESIKKRFNTFNVQTKLVIDH 162
Query: 187 YDNREVLDTFTGNTT-DEIWPRIYEHL 212
Y+ + + N +E++ +
Sbjct: 163 YNKFDKVKIIPANRDVNEVYNDVENLF 189
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 191 bits (489), Expect = 3e-62
Identities = 44/207 (21%), Positives = 92/207 (44%), Gaps = 31/207 (14%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
IIG PG GKGT ++++ + H++TG++LR +A + ++ M +G LVP +
Sbjct: 16 FIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGI 75
Query: 71 MIDLVKNEVKDLKCN---YLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127
+++L+K + + +L+DG+PR Q + P V+ ++ + + +RL +
Sbjct: 76 VLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQ 135
Query: 128 RWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYY 187
+ DD + I KRLE + + P++ YY
Sbjct: 136 M---------------------------SRSSLPVDDTTKTIAKRLEAYYRASIPVIAYY 168
Query: 188 DNREVLDTFTGNTT-DEIWPRIYEHLN 213
+ + L T ++++ ++ ++
Sbjct: 169 ETKTQLHKINAEGTPEDVFLQLCTAID 195
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 187 bits (477), Expect = 2e-60
Identities = 48/212 (22%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTT-LGLKAKEYMNKGLLVPDD 69
++G PG GKGT +++ ++ H++ GD+LR+ + + G K + +G +VP +
Sbjct: 19 FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQE 78
Query: 70 LMIDLVKNEV----KDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRL 125
+ + L++N + K K +L+DGFPR DQA++ ++ + ++ + P++++++RL
Sbjct: 79 ITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERL 138
Query: 126 SKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLD 185
+R K R DD E+IKKR TF +T P+++
Sbjct: 139 LER---------------------------GKTSGRSDDNIESIKKRFNTFKETSMPVIE 171
Query: 186 YYDNREVLDTFTGNTT-DEIWPRIYEHLNIRI 216
Y++ + + + + ++++ + + + +
Sbjct: 172 YFETKSKVVRVRCDRSVEDVYKDVQDAIRDSL 203
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 184 bits (470), Expect = 2e-59
Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 38/214 (17%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIA-QNTTLGLKAKEYMNKGLLVPDD 69
++G PG GKGT +RI++ + H++ G++LR ++ G ++Y+ +G +VP +
Sbjct: 7 FVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE 66
Query: 70 LMIDLVKNEVKDLKCN------YLLDGFPRTYDQAMAL---FKNHLSPNCVMHINVPKEV 120
+ I L+K E+ +L+DGFPR D + V+ + E+
Sbjct: 67 ITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEI 126
Query: 121 IIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTI 180
I+R +R K R DD E+++KR++T+ Q+
Sbjct: 127 CIERCLER---------------------------GKSSGRSDDNRESLEKRIQTYLQST 159
Query: 181 KPLLDYYDNREVLDTFTGNTT-DEIWPRIYEHLN 213
KP++D Y+ + + + DE++ + + +
Sbjct: 160 KPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 193
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 93.5 bits (232), Expect = 6e-24
Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 20/189 (10%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
+I G G GK T R+ + GDI+ + ++ E + L ++
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLA---LTWKNI 62
Query: 71 MIDLVKNEVKDLKCNYLLDG--FPRTYDQAMALFKNHLSPNCVMHIN--VPKEVIIDRLS 126
DL N + + + +LD FP + + + + I +E ++ R +
Sbjct: 63 -TDLTVNFLLA-QNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDA 120
Query: 127 KRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLET--------FDQ 178
R G + GID+ +P + ++ F
Sbjct: 121 LRKKDEQMGERCLELVEEFESKGIDE---RYFYNTSHLQPTNLNDIVKNLKTNPRFIFCM 177
Query: 179 TIKPLLDYY 187
PL ++
Sbjct: 178 AGDPLEHHH 186
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 73.4 bits (180), Expect = 2e-16
Identities = 32/207 (15%), Positives = 71/207 (34%), Gaps = 31/207 (14%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNK-GLL 65
+ +I G PG GK ++++ K I D++R + G + ++ + +
Sbjct: 1 IKVILITGMPGSGKSEF-AKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI 59
Query: 66 VPDDLMIDLVKNEVKDLKC-NYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDR 124
D ++ L E+ + DG R+ + + ++ ++ P ++ R
Sbjct: 60 YGDGVVARLCVEELGTSNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKR 118
Query: 125 LSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDD-KPEAIKKRLETFDQTIKPL 183
+ +R D +LI+RD + I + + D I
Sbjct: 119 MIER------------------LRSDDSKEISELIRRDREELKLGIGEVIAMADYII--- 157
Query: 184 LDYYDNREVLDTFTGNTTDEIWPRIYE 210
N + F +E+ R+ +
Sbjct: 158 ----TNDSNYEEFK-RRCEEVTDRVLK 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 1e-07
Identities = 51/260 (19%), Positives = 85/260 (32%), Gaps = 85/260 (32%)
Query: 8 LKAVIIGAPGCGKGTISSRII------DHF--NVKHIAT-----GDILRSHIA-QNTTLG 53
L++ + GA G +G +++ I + F +V+ T G +R + A NT+L
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG--VRCYEAYPNTSLP 320
Query: 54 LKA-KEYMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVM 112
++ + VP M L + +L + D + +HL +
Sbjct: 321 PSILEDSLENNEGVPS-PM--LS---ISNLTQEQVQD--------YVNKTNSHLPAGKQV 366
Query: 113 HI---NVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKP--- 166
I N K +++ S P S NL K P D + +R K
Sbjct: 367 EISLVNGAKNLVV---SG---PPQSLYGLNLTLRKAKAPSGLDQSRIPFSER---KLKFS 417
Query: 167 -------------------EAIKKRLETFDQTIK------PLLDYYDNREVLDTFTG--- 198
+ I K L + + P V DTF G
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP---------VYDTFDGSDL 468
Query: 199 -NTTDEIWPRIYEHLNIRIP 217
+ I RI + + IR+P
Sbjct: 469 RVLSGSISERIVDCI-IRLP 487
Score = 31.2 bits (70), Expect = 0.30
Identities = 31/228 (13%), Positives = 59/228 (25%), Gaps = 95/228 (41%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDHFNV-----KHIA------------TGD--------- 40
ML ++ + + + + N K + +G
Sbjct: 338 ML-SIS----NLTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 41 ILRSHIA-----QNTTLGLKAK----------------EYMNKGL-LVPDDLMIDLVKNE 78
LR A Q+ + K + L+ DL+ + V
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 79 VKDLKCNYLLDGFP--RTYDQA-MALFKNHLSPN-----CVMHINVPKEVIIDRLSKRWI 130
KD++ P T+D + + + +S + + + I
Sbjct: 452 AKDIQI-------PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET---TTQFKATHI 501
Query: 131 HPASGRVYNLDFNAPKKPGIDDIT-------GEKLI-------QRDDD 164
LDF G+ +T G ++I DDD
Sbjct: 502 ---------LDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 4e-07
Identities = 50/295 (16%), Positives = 88/295 (29%), Gaps = 117/295 (39%)
Query: 3 NTLLMLKA----VIIGAPGCGKGTI------SSRIIDHF-------NVKHIATGDIL--- 42
LL L+ +I G G GK + S ++ N+K+ + + +
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 43 --------------RSHIAQNTTLG-----------LKAKEYMNKGLLVPDDLMIDLVKN 77
RS + N L LK+K Y LLV + V+N
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLN-----VQN 255
Query: 78 E--VK--DLKCNYLL-------------------------DGFPRTYDQAMALFKNHLSP 108
+L C LL T D+ +L +L
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKYL-- 311
Query: 109 NCVMHINVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEA 168
+C ++P+EV+ +P R ++ + G+ K + D
Sbjct: 312 DCRPQ-DLPREVLT-------TNP---RRLSI-IAESIRDGLATWDNWKHVNC-DKLTTI 358
Query: 169 IKKRLETFDQTIKPLLDYYDNREVLDTFTGNTTDEIWPRIYEHLNIRIPPLKRLE 223
I+ L L+ + R++ D + ++P +I P L
Sbjct: 359 IESSLNV--------LEPAEYRKMFDRLS------VFP---PSAHI---PTILLS 393
Score = 36.8 bits (84), Expect = 0.005
Identities = 27/170 (15%), Positives = 50/170 (29%), Gaps = 38/170 (22%)
Query: 58 EYMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHI-NV 116
+Y K D++ V + C + D + K+ LS + HI
Sbjct: 15 QYQYK------DILSVFEDAFVDNFDCKDVQD-----------MPKSILSKEEIDHIIMS 57
Query: 117 PKEVI-IDRLSKRWIHPASG-RVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLE 174
V RL W + + + + I+ + +P + +
Sbjct: 58 KDAVSGTLRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSP--IKTEQRQPSMMTRM-- 111
Query: 175 TFDQTIKPLLDYYDNREVLDTFTGNTTDEIWPRIYEHLNIRIPPLKRLEP 224
+ + L Y DN+ R+ +L +R L L P
Sbjct: 112 -YIEQRDRL--YNDNQVFAKYNV--------SRLQPYLKLRQ-ALLELRP 149
Score = 33.7 bits (76), Expect = 0.044
Identities = 46/242 (19%), Positives = 76/242 (31%), Gaps = 73/242 (30%)
Query: 21 GTISSRIIDHF----NVKHIATGDILRSHIAQNTTLGLKAKEY--MNKGLLV-PDDLMI- 72
I+ I D N KH+ + + I +++ L+ EY M L V P I
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKL--TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 73 ---------DLVKNEVKDL--KC-NYLL---DGFPRTY---DQAMALFKNHLSPNCVMHI 114
D++K++V + K Y L T + L K L +H
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL-KVKLENEYALHR 447
Query: 115 ------NVPKEVIIDRLSKRWI----------HPASG----------RVYNLDFN----- 143
N+PK D L ++ H + V+ LDF
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQK 506
Query: 144 ------APKKPG--IDDITG----EKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNRE 191
A G ++ + + I +D K E + + F I+ L +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 192 VL 193
+L
Sbjct: 567 LL 568
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 46.6 bits (111), Expect = 7e-07
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 23/129 (17%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL------ 64
++ G C K T+++++ I G +A++ E + +
Sbjct: 5 ILEGPDCCFKSTVAAKLSKELKYPII-KGSSF--ELAKS------GNEKLFEHFNKLADE 55
Query: 65 --LVPDDLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVII 122
++ D + + K + L + R + + V++++ VI
Sbjct: 56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDK------IKAKAKVVYLHADPSVIK 109
Query: 123 DRLSKRWIH 131
RL R
Sbjct: 110 KRLRVRGDE 118
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 46.5 bits (110), Expect = 1e-06
Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 15/179 (8%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
++ G P GK T+S + + ++ D + + LG +E+ + +
Sbjct: 9 IVTGHPATGKTTLSQALATGLRLPLLSK-DAFKEVMFDG--LGWSDREWSRRVGATAIMM 65
Query: 71 MIDLVKNEVKDLKCNYLLDG---FPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127
+ + + +++ ++ L + +V+++R+
Sbjct: 66 LYHTAA-TILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILS 124
Query: 128 RWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDY 186
R A + D + E + R D P + L T D T +D
Sbjct: 125 RIAQGARHPGHCDDRSPADL--------ELVRSRGDIPPLPLGGPLLTVDTTFPEQIDM 175
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 47.2 bits (111), Expect = 1e-06
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 5/126 (3%)
Query: 9 KAVII-GAPGCGKGTISSRIIDHFNVKHIA-TGDILRSHIAQNTTLGLKAKEYMNKGLLV 66
A+++ G G GK TI F + GD RS L + + +
Sbjct: 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKD 92
Query: 67 PDDLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNC---VMHINVPKEVIID 123
M++ + ++ L N L++G RT D + + + I E+
Sbjct: 93 FAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYL 152
Query: 124 RLSKRW 129
R+
Sbjct: 153 STLIRY 158
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 44.3 bits (104), Expect = 7e-06
Identities = 24/136 (17%), Positives = 40/136 (29%), Gaps = 26/136 (19%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVK--HIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP- 67
++ G PG GK TI+ + + V H D L Y+ G + P
Sbjct: 13 LLSGHPGSGKSTIAEALANLPGVPKVHFH-SDDLW--------------GYIKHGRIDPW 57
Query: 68 ---DDLMIDLVKNEVKDLKCNYLLDGFPRTYDQA-----MALFKNHLSPNCVMHINVPKE 119
++ D+ Y +G+ D + F P + +
Sbjct: 58 LPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAA 117
Query: 120 VIIDRLSKRWIHPASG 135
I+R R S
Sbjct: 118 EAIERCLDRGGDSLSD 133
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 44.2 bits (104), Expect = 7e-06
Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 15/118 (12%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
++ G PG GK T+ + +K+I GD+ R + + ++ +D
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDG------YDEEYDCPILDEDR 68
Query: 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128
++D + N++++ ++D F + V + V+ +RL R
Sbjct: 69 VVDELDNQMRE--GGVIVDYHGCD-------FFPERWFHIVFVLRTDTNVLYERLETR 117
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 44.2 bits (103), Expect = 1e-05
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Query: 10 AVIIGAPGCGKGTISSRIIDHFNVKHIA-TGDILRSHIAQNTTLGLKAKEYMNKGLLVPD 68
++ G PG GK ++ S I + I D + L ++ + K +
Sbjct: 36 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYS 95
Query: 69 DLMIDLVKNEVKDLKCNYLLDGFPRTYD---QAMALFKNHLSPNCVMHINVPKEVIIDRL 125
+ M + + + + D N +++G RT D Q + + + + VPK
Sbjct: 96 NRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGT 155
Query: 126 SKRW 129
+R+
Sbjct: 156 IERY 159
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 41.2 bits (96), Expect = 9e-05
Identities = 31/187 (16%), Positives = 57/187 (30%), Gaps = 28/187 (14%)
Query: 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYM 60
M+ V++G G GK TI+ + D ++ H +N M
Sbjct: 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAF---HSPENI-------ATM 72
Query: 61 NKGLLVPD-------DLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMH 113
+G+ + D + + + + + + + +H
Sbjct: 73 QRGIPLTDEDRWPWLRSLAEWMDARADAGVSTIITCSALK--RTYRDVLREGPPSVDFLH 130
Query: 114 INVPKEVIIDRLSKRWIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKP-----EA 168
++ P EVI R+SKR H + + D E I D +P E
Sbjct: 131 LDGPAEVIKGRMSKREGHFMPASLLQSQLATLEALEPD----ESGIVLDLRQPPEQLIER 186
Query: 169 IKKRLET 175
L+
Sbjct: 187 ALTWLDI 193
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 39.7 bits (92), Expect = 2e-04
Identities = 24/179 (13%), Positives = 55/179 (30%), Gaps = 21/179 (11%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPD-D 69
V++G G GK ++ I + I + H +N M++G+ + D D
Sbjct: 22 VVMGVSGSGKSSVGEAIAEACGYPFIEGDAL---HPPEN-------IRKMSEGIPLTDDD 71
Query: 70 LMIDLVK-NEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKR 128
L E + ++ L ++ + ++ + V+ +R+ R
Sbjct: 72 RWPWLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHR 131
Query: 129 WIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKP-----EAIKKRLETFDQTIKP 182
H + + P + + + D +P L + +
Sbjct: 132 TGHFMPSSLLQTQLETLEDPRGE----VRTVAVDVAQPLAEIVREALAGLARLAENLYF 186
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 39.1 bits (91), Expect = 5e-04
Identities = 19/146 (13%), Positives = 46/146 (31%), Gaps = 31/146 (21%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIAT----GDILRSHIAQNTTLGLKAKEYMNKGLLV 66
++ G PG GK T S + + +I D++R + V
Sbjct: 8 ILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR------------------ESFPV 49
Query: 67 PDDLMIDLVKNEVKDLKCNYLLDGF---------PRTYDQAMALFKNHLSPNCVMHINVP 117
+ + +K L + L + + + + K + ++++
Sbjct: 50 WKEKYEEFIKKSTYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS 109
Query: 118 KEVIIDRLSKRWIHPASGRVYNLDFN 143
+V+I R +R + + +
Sbjct: 110 LDVLIRRNIERGEKIPNEVIKKMYEK 135
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 38.2 bits (88), Expect = 7e-04
Identities = 19/122 (15%), Positives = 50/122 (40%), Gaps = 18/122 (14%)
Query: 11 VIIGAPGCGKGTISSRIIDHFN-VKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDD 69
+I G PG GK +++ I + +H+ G +++ + + + ++
Sbjct: 14 LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-------HFYTEYDTELDTHIIEE 66
Query: 70 LMIDLVKNEVKDL---KCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLS 126
D + + ++ + + N+++D + V+ ++ EV+ +RL+
Sbjct: 67 KDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWF-------HMVVVLHTSTEVLFERLT 119
Query: 127 KR 128
KR
Sbjct: 120 KR 121
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 36.9 bits (85), Expect = 0.002
Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 5/121 (4%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V++G G GK ++S + + + + + G + K L
Sbjct: 12 VLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL---QA 68
Query: 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWI 130
+ D + K + ++ + + + + + +++ +VI RL R
Sbjct: 69 LNDAAFAMQRTNKVSLIVCSALKKHYRDLL--REGNPNLSFIYLKGDFDVIESRLKARKG 126
Query: 131 H 131
H
Sbjct: 127 H 127
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 36.7 bits (85), Expect = 0.003
Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 10/133 (7%)
Query: 7 MLKAVI-IGAPGCGKGTISSRII-DHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL 64
M K ++ IG PG GK T + I + +I D +S +A K Y K
Sbjct: 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYK---YTKKKE 57
Query: 65 LVPDDLMIDLVKNEVKDLK--CNYLLDG---FPRTYDQAMALFKNHLSPNCVMHINVPKE 119
+ + D K+ + ++ P K + +VP
Sbjct: 58 GIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWT 117
Query: 120 VIIDRLSKRWIHP 132
++ R SKR
Sbjct: 118 ELVKRNSKRGTKA 130
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 36.6 bits (84), Expect = 0.003
Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 13/131 (9%)
Query: 9 KAVIIGAPGCGKGTISSRIID-----HFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKG 63
V+ G PG G T S +D N K ++ G ++ +A+ L +
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE-VAKEENLVSDRDQMRKMD 63
Query: 64 LLVPDDLMIDLVKNEVKDLK-CNYLLDG--FPRTYDQAMALFKNH----LSPNCVMHINV 116
+ + + K +D T + + L+P+ ++ +
Sbjct: 64 PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVET 123
Query: 117 PKEVIIDRLSK 127
+ I+ R
Sbjct: 124 TGDEILMRRMS 134
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 35.8 bits (82), Expect = 0.007
Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 10/149 (6%)
Query: 7 MLKAVI-IGAPGCGKGTISSRII-DHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGL 64
M K ++ IG PG GK T + I + +I D R I + +Y K
Sbjct: 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERD--EYKYTKKKE 57
Query: 65 LVPDDLMIDLVKNEVKDLKC--NYLLDG---FPRTYDQAMALFKNHLSPNCVMHINVPKE 119
+ + D K+ + ++ P K + +VP
Sbjct: 58 GIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWT 117
Query: 120 VIIDRLSKRWIHPASGRVYNLDFNAPKKP 148
++ R SKR V + + ++
Sbjct: 118 ELVKRNSKRGTKAVPIDVLRSMYKSMREY 146
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 35.1 bits (80), Expect = 0.008
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 16/137 (11%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-----HFNVKHIATGDILRSHIAQNTTLGLKAKEYMN 61
M ++ G PG GK T+ +++ + N K I GD + + A E
Sbjct: 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLA-TALKLGYAKDRDEMRK 59
Query: 62 KGLLVPDDLMIDLVKNEVKDLKC----NYLLDG-----FPRTYDQAMAL-FKNHLSPNCV 111
+ L ID K ++ + +D P Y + ++P+ +
Sbjct: 60 LSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVI 119
Query: 112 MHINVPKEVIIDRLSKR 128
+ ++I+ R +
Sbjct: 120 FLLEADPKIILSRQKRD 136
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 33.1 bits (75), Expect = 0.057
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTL 52
++ G + + + NV +A I +IAQ +
Sbjct: 124 VVARGGTANAIRIAAVDNPVNVNKLAQDSI---NIAQIVPM 161
Score = 26.6 bits (58), Expect = 6.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKH 35
+++G+PG GK TI+ + N K+
Sbjct: 28 ILVGSPGSGKSTIAEELCQIINEKY 52
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 32.1 bits (74), Expect = 0.076
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 11 VIIGAPGCGKGTISSRIIDHF 31
V++GA G G+ I + +I
Sbjct: 9 VLLGAHGVGRRHIKNTLITKH 29
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 32.2 bits (74), Expect = 0.079
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 11 VIIGAPGCGKGTISSRIIDHF 31
V+IGA G G+ I + ++
Sbjct: 23 VLIGASGVGRSHIKNALLSQN 43
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 31.4 bits (70), Expect = 0.18
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIA 47
+ G GK T + I+ +++ ++ +A
Sbjct: 6 LSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 31.4 bits (72), Expect = 0.22
Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFP 92
+ + ID +K ++K + +L +
Sbjct: 118 ALTRSDST-HMHAIDELKAKLKVITSGTVLQDWE 150
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 31.2 bits (70), Expect = 0.22
Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 23/127 (18%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVK---HIATGDI----LRSHIAQNTTLGLKAKEYMNKG 63
V +G G GK T++ + D L + + + +E M +G
Sbjct: 18 VFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREG 77
Query: 64 LLVPDDLM---------IDLVKNEVKDL--KCNYLLDGFPR-----TYDQAMALFKNHLS 107
++ + N++ L + +Y+L P + + +L
Sbjct: 78 YGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLP 137
Query: 108 PNCVMHI 114
V++I
Sbjct: 138 YPLVVYI 144
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 31.4 bits (71), Expect = 0.25
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFP 92
++NK +V D+ +++LV+ EV++L Y FP
Sbjct: 418 FLNKCDMVDDEELLELVEMEVRELLSQY---DFP 448
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 30.6 bits (69), Expect = 0.31
Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 17/123 (13%)
Query: 9 KAVII---GAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQ-----NTTLGLKAKEYM 60
+ +I G GK ++ ++I+ + ++Q T KAK
Sbjct: 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALK 80
Query: 61 NK-GLLVPDDLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKE 119
+ PD +L+ +K++ + YD F +H + + P +
Sbjct: 81 GQFNFDHPDAFDNELILKTLKEITEGKTVQI--PVYD-----FVSHSRKEETVTVY-PAD 132
Query: 120 VII 122
V++
Sbjct: 133 VVL 135
>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass,
transferase, tricarboxylic acid cycle; 1.04A
{Escherichia coli} PDB: 3cv1_A 3cv2_A*
Length = 532
Score = 30.9 bits (70), Expect = 0.32
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 37 ATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFPR-TY 95
AT +I R+ I Q + ++ ++ G V L ++ E+K + + F + +
Sbjct: 448 ATAEISRTSIWQW----IHHQKTLSNGKPVTKALFRQMLGEEMKVIASELGEERFSQGRF 503
Query: 96 DQAMALFK 103
D A L +
Sbjct: 504 DDAARLME 511
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 30.6 bits (70), Expect = 0.43
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFP 92
Y+NK V D M++LV+ E+++L + G+
Sbjct: 125 YVNKADAVQDSEMVELVELEIRELLTEF---GYK 155
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.43
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 28/60 (46%)
Query: 151 DDITGEKLIQRDDDKPEAIKK-------RLETFD------------QTIKPLLDYYDNRE 191
D +T E PE+I+K RL+ D + K L ++ +
Sbjct: 78 DRLTQE---------PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 128
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.44
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 76 KNEVKDLKCN---YLLDGFPRTYDQAMAL 101
K +K L+ + Y D P A+A+
Sbjct: 19 KQALKKLQASLKLYADDSAP-----ALAI 42
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 30.2 bits (69), Expect = 0.48
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 59 YMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFP 92
+MNK +V D ++DLV+ EV+DL Y FP
Sbjct: 134 FMNKVDMVDDPELLDLVEMEVRDLLNQY---EFP 164
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 29.5 bits (66), Expect = 0.60
Identities = 23/214 (10%), Positives = 57/214 (26%), Gaps = 47/214 (21%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
I G G GK + + + + + + + + T D
Sbjct: 9 WINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLT------------PGFSGDPQ 56
Query: 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWI 130
+ + D Y ++ +++ RL +
Sbjct: 57 EHPMWIPLMLDA-LQYASREAAGP---------------LIVPVSISDTARHRRLMSG-L 99
Query: 131 HPASGRVYNLDFNAPKKPGIDDITGEKLIQR---DDDKPEAIKKRLETFDQTIKPLLDYY 187
V++ AP +++R D + + ++ L
Sbjct: 100 KDRGLSVHHFTLIAPL---------NVVLERLRRDGQPQVNVGTVEDRLNE-----LRGE 145
Query: 188 DNREVLDTFTGNTTDEIWPRIYEHLNIRIPPLKR 221
+ +DT G T ++ +I + + + P +
Sbjct: 146 QFQTHIDT-AGLGTQQVAEQIAAQVGLTLAPPPQ 178
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 29.3 bits (65), Expect = 0.69
Identities = 21/134 (15%), Positives = 37/134 (27%), Gaps = 11/134 (8%)
Query: 7 MLKAVII--GAPGCGKGTISSRIIDHFNVKHIATG-DILRSHIAQNTTLGLKAKEYMNKG 63
M +II G GK I + +A G D L + E+ G
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADG 60
Query: 64 LLVPDDLMIDLVKNEVK------DLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINV- 116
+ L + ++D A +++ + V+ + V
Sbjct: 61 GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVR 120
Query: 117 -PKEVIIDRLSKRW 129
V R + R
Sbjct: 121 CDGAVAEGRETARG 134
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 29.1 bits (66), Expect = 0.81
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
+LK +I+G G GK ++ R ++ ++ ++ AT
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKAT 40
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 29.1 bits (66), Expect = 0.87
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
+ K +++G G GK T++ + H
Sbjct: 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE 55
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 29.4 bits (66), Expect = 0.92
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 23/126 (18%)
Query: 9 KAVII---GAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQ-----NTTLGLKAKEYM 60
+ +I G GK T+ +I++ + ++Q T KAK
Sbjct: 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALK 83
Query: 61 NK-GLLVPDDLMIDLVKNEVKDLKCNYLLDGFP---RTYDQAMALFKNHLSPNCVMHINV 116
+ PD DL+ +K++ +G TYD F H +
Sbjct: 84 GQYNFDHPDAFDNDLMHRTLKNIV-----EGKTVEVPTYD-----FVTHSRLPETTVVY- 132
Query: 117 PKEVII 122
P +V++
Sbjct: 133 PADVVL 138
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase,
tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Length = 528
Score = 29.5 bits (66), Expect = 0.96
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 37 ATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKDLKCNYLLDGFPRT-Y 95
AT +I R+ + Q +N G + +LM +L + E+ ++ + F + +
Sbjct: 444 ATAEISRAQVWQWIR---HEGGKLNDGRNITLELMEELKEEELAKIEREIGKEAFKKGRF 500
Query: 96 DQAMALFK 103
+A LF
Sbjct: 501 QEATTLFT 508
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 29.6 bits (67), Expect = 1.1
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 16/56 (28%)
Query: 12 IIGAPGCGKGTISSRI------------IDHFNVKHIATGDILRSHIA---QNTTL 52
++G GCGK T + ID +++ I LR I Q L
Sbjct: 421 LVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRY-LREIIGVVSQEPVL 475
Score = 28.8 bits (65), Expect = 1.8
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 16/56 (28%)
Query: 12 IIGAPGCGKGTI-----------SSRI-IDHFNVKHIATGDILRSHIA---QNTTL 52
++G+ GCGK T+ + + +D +K + LR+ + Q L
Sbjct: 1064 LVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQW-LRAQLGIVSQEPIL 1118
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 29.1 bits (66), Expect = 1.2
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 16/56 (28%)
Query: 12 IIGAPGCGKGTISS-----------RI-IDHFNVKHIATGDILRSHIA---QNTTL 52
++G G GK TI I ID ++ + T LRSHI Q+T L
Sbjct: 85 LVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQV-TQASLRSHIGVVPQDTVL 139
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 28.7 bits (65), Expect = 1.3
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDH-FNVKHIAT 38
M K ++IG GK + R D F ++T
Sbjct: 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVST 54
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 28.7 bits (65), Expect = 1.3
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
+ K ++IG+ G GK + + I+ F T
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHT 57
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 29.1 bits (65), Expect = 1.3
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKH-----IATGDILRSHIAQN-TTLGLKAKEYMNKGL 64
++ G G GK S + + + ++ T + I +N + G + +++G
Sbjct: 43 LVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK 102
Query: 65 LVPDDLMIDLVKNEVKD 81
L D D EV
Sbjct: 103 LFILDASPDPEGQEVVG 119
Score = 26.4 bits (58), Expect = 8.9
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 14/87 (16%)
Query: 11 VIIGAPGCGKGTISSRIIDHF-----NVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLL 65
+ GA G GK + SR +++ A + + + G+ +E + LL
Sbjct: 285 LATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLL 344
Query: 66 VPDDL---------MIDLVKNEVKDLK 83
+ ++K+E+ D K
Sbjct: 345 KIVCAYPESAGLEDHLQIIKSEINDFK 371
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 28.4 bits (64), Expect = 1.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
K V++G G GK T R + F K++AT
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVAT 47
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 28.3 bits (64), Expect = 1.4
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
+ K ++IG G GK + + I+ F T
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHT 42
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 28.2 bits (64), Expect = 1.6
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 9 KAVIIGAPGCGKGTISSRIIDHFNVKHIAT-GDILRSHI 46
K +++GAPG GK ++ + G I
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI 42
>2fdr_A Conserved hypothetical protein; SAD, structural genomics,
agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A
{Agrobacterium tumefaciens str} SCOP: c.108.1.6
Length = 229
Score = 28.4 bits (64), Expect = 1.6
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 187 YDNREVLDTFTGNTTDEIWPRIYEHLNIRIPP 218
E+ + F G T I ++ +I +
Sbjct: 37 ISVEEMGERFAGMTWKNILLQVESEASIPLSA 68
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 28.5 bits (64), Expect = 1.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
++K + +G G GK T R D FN K I T
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITT 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 27.9 bits (63), Expect = 1.8
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDH-FNVKHIAT 38
++K ++IG G GK + R ++ FN I T
Sbjct: 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITT 35
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
K +IG G GK T +R++ F + AT
Sbjct: 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNAT 43
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 28.0 bits (63), Expect = 1.8
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 6 LMLKAVIIGAPGCGKGTISSR---IIDHFNVKHIAT 38
L K ++G GK + S F + T
Sbjct: 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMT 54
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 27.9 bits (63), Expect = 1.8
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 8 LKAVIIGAPGCGKGTISSRII-DHFNVKHIATGDILRSHI 46
LK I+G GK + R + + + G + I
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEI 60
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 27.9 bits (63), Expect = 1.8
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
+ K +IIG G GK + + + F T
Sbjct: 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHT 47
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 28.0 bits (63), Expect = 1.8
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDH-FNVKHIAT 38
M K +IIG GK + R D F ++T
Sbjct: 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVST 40
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 28.0 bits (63), Expect = 1.8
Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDH-FNVKHIAT 38
+LK +I+G G GK ++ ++ ++ F+ ++ AT
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 27.9 bits (63), Expect = 1.9
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDH-FNVKHIAT 38
+ K +++G G GK ++ +R + + F+ + T
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHT 39
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 28.1 bits (63), Expect = 2.0
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 3 NTLLMLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
N L K V +G GK ++ +R + D F+ + AT
Sbjct: 12 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT 48
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 27.9 bits (63), Expect = 2.1
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDH-FNVKHIAT 38
+ K +IIG G GK ++ R D+ F+ +I T
Sbjct: 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITT 41
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 28.0 bits (63), Expect = 2.1
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
+ K V++G GK + R F+ + +T
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGST 61
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 28.1 bits (63), Expect = 2.2
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDH-FNVKHIAT 38
++K ++IG G GK + R ++ FN I T
Sbjct: 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITT 52
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 27.9 bits (63), Expect = 2.3
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
LK V++G GK ++++ + F ++ T
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQT 38
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 27.7 bits (62), Expect = 2.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
+ K V+IG G GK + SR FN+ +T
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKST 45
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 27.9 bits (63), Expect = 2.3
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
+ K +IIG G GK + + D F H T
Sbjct: 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT 53
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 27.9 bits (63), Expect = 2.4
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 15/55 (27%)
Query: 12 IIGAPGCGKGTISS----------RI-IDHFNVKHIATGDILRSHIA---QNTTL 52
++G G GK TI+ I I NV + +RS I Q+T L
Sbjct: 51 LVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKY-NRNSIRSIIGIVPQDTIL 104
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 27.5 bits (62), Expect = 2.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
K V++G GK ++ R + FN KHI T
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITT 38
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 27.6 bits (62), Expect = 2.5
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDH-FNVKHIAT 38
M K +IIG GK + R D F ++T
Sbjct: 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVST 55
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 27.4 bits (62), Expect = 2.5
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 4 TLLMLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT-GDILRSHI 46
+L + K +++G+ G GK ++ + + D F + T D R +
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV 45
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 27.6 bits (62), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 3 NTLLMLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
+ + LK ++G G GK +I R + DHF+ T
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPT 55
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 27.6 bits (62), Expect = 2.6
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
L+ +IIG+ G GK ++ R D F +T
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKST 58
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 27.6 bits (62), Expect = 2.6
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
++K + +G G GK ++ + D FN K I T
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITT 43
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 28.1 bits (62), Expect = 2.7
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 11 VIIGAPGCGKGTISSRIIDHF 31
I G G G T++ II+
Sbjct: 49 TINGPAGTGATTLTKFIIEAL 69
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 27.5 bits (62), Expect = 2.8
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDH-FNVKHIAT 38
+ K ++IG G GK + R + FN I+T
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFIST 40
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 27.6 bits (62), Expect = 2.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
+ K V+IG G GK + SR FN++ +T
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST 61
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 27.5 bits (62), Expect = 3.0
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
+ K +++G G GK T++ + H
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEME 34
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 27.6 bits (62), Expect = 3.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
+ K V+IG G GK + SR FN++ +T
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST 37
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 27.1 bits (61), Expect = 3.1
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 3 NTLLMLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
N + K V++G GK ++ R + F+ +T
Sbjct: 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQEST 38
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 27.1 bits (61), Expect = 3.2
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 3 NTLLMLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
+ L LK ++G G GK +I R + D F+ T
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPT 38
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 27.1 bits (61), Expect = 3.2
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 3 NTLLMLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
N L K V +G GK ++ +R + D F+ + AT
Sbjct: 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT 46
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 27.2 bits (61), Expect = 3.3
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
+ K V+IG G GK + R F AT
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGAT 58
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 27.1 bits (61), Expect = 3.4
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHFNVKHIAT-GDILRSHI 46
K V++G G GK ++ + F + T D H
Sbjct: 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHT 59
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 27.2 bits (61), Expect = 3.5
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
K V+ G GK + R+ F AT
Sbjct: 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISAT 60
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 27.5 bits (62), Expect = 3.6
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 16/56 (28%)
Query: 12 IIGAPGCGKGTISS-----------RI-IDHFNVKHIATGDILRSHIA---QNTTL 52
+G G GK T+ + +I ID N+K TG LR+ I Q+ L
Sbjct: 372 FVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS-LRNQIGLVQQDNIL 426
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 27.2 bits (61), Expect = 3.6
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDH-FNVKHIAT 38
+ K ++IG GK ++ R F + AT
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEAT 52
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 27.2 bits (61), Expect = 4.1
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
+ K V+IG G GK + SR F+ T
Sbjct: 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTT 57
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 27.1 bits (61), Expect = 4.1
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 158 LIQRDDDKPEAIKKRLETFDQTIKPLLDYYD 188
LI+R D I++RL + + +D
Sbjct: 136 LIKRRQDDTAIIEQRLALAREEMA-HYKEFD 165
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 27.0 bits (61), Expect = 4.1
Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 6 LMLKAVII---GAPGCGKGTISSRIIDHFNVKHIATG 39
++ ++++ G G GK ++S + +++ TG
Sbjct: 5 MVSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTG 41
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 27.2 bits (61), Expect = 4.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHFNVKHIAT-GDILRSHI 46
K V++GA G GK ++ ++I +HF ++ T D R +
Sbjct: 23 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV 62
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 27.4 bits (60), Expect = 4.1
Identities = 5/43 (11%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 4 TLLMLKAVII---GAPGCGKGTISSRIIDHFNVKHIATGDILR 43
+ K +II G G + ++ + + +
Sbjct: 8 RFMGNKNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKL 50
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 27.2 bits (61), Expect = 4.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHFNVKHIAT-GDILRSHI 46
K V++GA G GK ++ ++I +HF ++ T D R +
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV 45
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 27.2 bits (61), Expect = 4.2
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHFNVKHIAT-GDILRSHI 46
I+G G GK ++ + + F ++ D S
Sbjct: 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE 62
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 26.7 bits (60), Expect = 4.2
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
+K V++G GK ++ R F + T
Sbjct: 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKT 37
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 26.7 bits (60), Expect = 4.3
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHFNVKHIAT-GDILRSHI 46
K V++G+ G GK ++ + + F K+ T D R I
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEI 44
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 27.1 bits (61), Expect = 4.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 158 LIQRDDDKPEAIKKRLETFDQTIK 181
L+ R+ + E I+KR+E + +
Sbjct: 155 LLTRNTENQEQIQKRMEQLNIELH 178
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 27.1 bits (61), Expect = 4.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 158 LIQRDDDKPEAIKKRLETFDQTIK 181
L R+ +KPE I KR++ + +
Sbjct: 144 LKNRNTEKPEEINKRMQELTREMD 167
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 27.1 bits (61), Expect = 4.5
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 16/56 (28%)
Query: 12 IIGAPGCGKGTISSRI------------IDHFNVKHIATGDILRSHIA---QNTTL 52
G G GK TI S + ID + +I+ + RS I Q++ +
Sbjct: 33 FAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN-WRSQIGFVSQDSAI 87
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 26.9 bits (60), Expect = 4.7
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
+ K ++IG G GK + R D + +I+T
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYIST 40
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 26.8 bits (60), Expect = 4.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIID-HFNVKHIAT 38
LK +IIG G GK ++ R D F+ + AT
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAAT 47
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 27.4 bits (61), Expect = 4.9
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 43 RSHIAQNTTLGLKAKEYMNKGLLVPDDLMIDLVKNEVKD-LKCNYLLDGFP 92
H+ + + K + I + +K L+ + L
Sbjct: 115 GEHMLILDHFNIPIIVVITKSDNAGTE-EIKRTEMIMKSILQSTHNLKNSS 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 26.8 bits (60), Expect = 5.1
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 158 LIQRDDDKPEAIKKRLETFDQTIKPLLDY 186
L R D E ++ RL+ I Y
Sbjct: 158 LCGRRADDSEVVEARLKGAAFEISHCEAY 186
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 26.7 bits (60), Expect = 5.3
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHFNVKHIAT-GDILRSHI 46
K V++GA G GK ++ ++I +HF + T D R +
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQV 44
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 26.7 bits (60), Expect = 5.5
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHFNVKHIAT-GDILRSHI 46
K V++G G GK ++ + I +F + T D
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKIC 50
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 27.3 bits (60), Expect = 5.5
Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 27/224 (12%)
Query: 12 IIGAPGCGKGT----ISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVP 67
+ G PG GK I+ + + ++ + I + L + + +
Sbjct: 68 LAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKET 127
Query: 68 DDLMIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSK 127
++ EV +L + + + + + I + L K
Sbjct: 128 KEVYEG----EVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPS-IFESLQK 182
Query: 128 R--------WIHPASGRVYNLDFNAPKKPGIDDITGEKLIQRDDDKPEAIKKRLETFDQT 179
+I SG V D+ E+ + K + KK+ D T
Sbjct: 183 ERVEAGDVIYIEANSGAVKRQG-RCDTYATEFDLEAEEYVPL--PKGDVHKKKEIIQDVT 239
Query: 180 IKPL-------LDYYDNREVLDTFTGNTTDEIWPRIYEHLNIRI 216
+ L D ++ EI ++ +N +
Sbjct: 240 LHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVV 283
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein;
HET: GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 26.7 bits (59), Expect = 5.8
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
K V++G GK +I R+ D F+ T
Sbjct: 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTT 39
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 26.3 bits (59), Expect = 5.8
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHFNVKHIAT-GDILRSHI 46
+ + GA G GK ++ R + F +I T D R I
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI 44
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 26.3 bits (58), Expect = 6.0
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
K V++G GK +I R + + F T
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPT 35
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 26.6 bits (59), Expect = 6.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKH 35
+ GAPG GK T+S+ + + +
Sbjct: 27 LSGAPGSGKSTLSNPLAAALSAQG 50
>3zvl_A Bifunctional polynucleotide phosphatase/kinase;
hydrolase-transferase complex, base excision repair,
BER, non-homologous END-joining, NHEJ; 1.65A {Mus
musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B*
3u7h_B* 3u7g_A*
Length = 416
Score = 26.8 bits (58), Expect = 6.1
Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 22/126 (17%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTTLGLKAKEYMNKGLLVPDDL 70
V +G PG GK T + H+ D L S + + + +G V
Sbjct: 262 VAVGFPGAGKSTFIQEHLVSAGYVHVNR-DTLGSWQRCVS----SCQAALRQGKRV---- 312
Query: 71 MIDLVKNEVKDLKCNYLLDGFPRTYDQAMALFKNHLSPNCVMHINVPKEVIIDRLSKRWI 130
+ID +V + + K+ P + E R +
Sbjct: 313 VIDNTNPDVPSRA-------------RYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM 359
Query: 131 HPASGR 136
S
Sbjct: 360 TDPSHA 365
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 26.7 bits (60), Expect = 6.1
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 158 LIQRDDDKPEAIKKRLETFDQTIKPLLDYYD 188
L R D E I KR+ + YD
Sbjct: 147 LRGRGQDSEEVIAKRMAQAVAEMS-HYAEYD 176
Score = 26.0 bits (58), Expect = 9.0
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 11 VIIGAP-GCGKGTISSRIIDHFNVKHI 36
I+ AP G GK ++ ++ +
Sbjct: 19 YIVSAPSGAGKSSLIQALLKTQPLYDT 45
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 26.8 bits (60), Expect = 6.3
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHIATGDI 41
++IG PG ++D + + DI
Sbjct: 238 IVIGTPG--------TVMDLMKRRQLDARDI 260
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 26.8 bits (58), Expect = 6.5
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 1 MLNTLLMLKAVIIGAPGCGKGTISSRIIDHFNVKHIATGDILRSHIAQNTT 51
+N + + + +IGA G ++ D F + G +A N
Sbjct: 37 SVNDISI-RWGVIGAGQKG-----NKEADLFAGYKFSNGTTCYPTLAVNFA 81
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 26.9 bits (59), Expect = 6.5
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 154 TGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNRE 191
+ L+ + E I + D+ L D + R+
Sbjct: 66 RAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERK 103
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 26.3 bits (59), Expect = 6.7
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
K V++G+ G GK ++ + + F K+ T
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPT 35
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 26.4 bits (59), Expect = 6.8
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 9 KAVIIGAPGCGKGTISSRII-DHFNVKHIAT-GDILRSHI 46
K +++G+ G GK ++ + + D F + T D R +
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV 59
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 26.3 bits (59), Expect = 6.8
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 3 NTLLMLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT 38
N + K V++G G GK ++ R + D F +T
Sbjct: 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQEST 44
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 26.3 bits (59), Expect = 6.8
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 9 KAVIIGAP-GCGKGTISSRIIDHFN 32
+ ++I P G GK T+ ++ +
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYP 26
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 26.8 bits (60), Expect = 6.8
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 16/56 (28%)
Query: 12 IIGAPGCGKGTISSRI------------IDHFNVKHIATGDILRSHIA---QNTTL 52
++G G GK T+ + I +D +V+ + D LR HI+ Q T L
Sbjct: 374 VLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD-LRGHISAVPQETVL 428
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 26.1 bits (58), Expect = 7.6
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDH-FNVKHIAT 38
+ K ++IG G GK + R D + +I+T
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYIST 65
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 26.0 bits (58), Expect = 8.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 3 NTLLMLKAVIIGAPGCGKGTISSRII-DHFNVKHIAT-GDILRSHI 46
N+L + K +++G+ G GK ++ + + D F + T D R +
Sbjct: 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV 55
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 26.1 bits (58), Expect = 8.1
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 12 IIGAPGCGKGTISSRIIDHFNVKHI 36
I G GK T+++++ + I
Sbjct: 27 IDGLSRSGKTTLANQLSQTLREQGI 51
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 26.0 bits (56), Expect = 8.1
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 7 MLKAV-IIGAPGCGKGTISSRIIDHFNVKHIATGDILRSH 45
M+ + G GK T+ ++I + I G I +H
Sbjct: 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 25.9 bits (58), Expect = 8.6
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 11 VIIGAP-GCGKGTISSRIIDHFN 32
+++ P G GKGT+ RI + +
Sbjct: 9 IVLSGPSGVGKGTVRKRIFEDPS 31
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A*
3mrs_A 3n2e_A*
Length = 168
Score = 26.0 bits (58), Expect = 8.7
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHI 36
V+IG G GK +++ + ++ +
Sbjct: 11 VLIGFMGSGKSSLAQELGLALKLEVL 36
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich,
oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis}
Length = 249
Score = 26.2 bits (58), Expect = 9.0
Identities = 7/50 (14%), Positives = 21/50 (42%)
Query: 163 DDKPEAIKKRLETFDQTIKPLLDYYDNREVLDTFTGNTTDEIWPRIYEHL 212
+ + + + T+D+TI N + +T++ + + + +L
Sbjct: 188 NVNTDDFRHTMNTYDKTISDYYRERTNGKREETWSDQILNFMKQKPRTYL 237
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 26.0 bits (57), Expect = 9.3
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 154 TGEKLIQRDDDKPEAIKKRLETFDQTIKPLLDYYDNRE 191
G++L+ IK++L+ DQ L + R
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRR 112
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 26.0 bits (58), Expect = 9.4
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 11 VIIGAP-GCGKGTISSRIIDHF 31
V++ P GK T+ + +
Sbjct: 23 VVLSGPSAVGKSTVVRCLRERI 44
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 26.1 bits (58), Expect = 9.7
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 MLKAVIIGAPGCGKGTISSRIIDH-FNVKHIAT 38
+ K ++IG G GK + R D + +I+T
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYIST 48
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 26.0 bits (58), Expect = 9.9
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 11 VIIGAPGCGKGTISSRIIDHFNVKHI 36
V IG G GK T++ + ++ +
Sbjct: 8 VFIGFMGSGKSTLARALAKDLDLVFL 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.422
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,733,674
Number of extensions: 231710
Number of successful extensions: 914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 848
Number of HSP's successfully gapped: 202
Length of query: 228
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 138
Effective length of database: 4,188,903
Effective search space: 578068614
Effective search space used: 578068614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)