BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6804
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W4L|A Chain A, Human Dcmp Deaminase
pdb|2W4L|B Chain B, Human Dcmp Deaminase
pdb|2W4L|C Chain C, Human Dcmp Deaminase
pdb|2W4L|D Chain D, Human Dcmp Deaminase
pdb|2W4L|E Chain E, Human Dcmp Deaminase
pdb|2W4L|F Chain F, Human Dcmp Deaminase
Length = 178
Score = 173 bits (439), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 97/125 (77%), Gaps = 5/125 (4%)
Query: 83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD P
Sbjct: 4 KKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLP 63
Query: 143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
W + ++LD +CHAE+NAI+NKN D K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct: 64 WRRTAENKLDTKYPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVI 123
Query: 198 YMCDK 202
+M DK
Sbjct: 124 FMSDK 128
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 48/66 (72%)
Query: 1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFD 60
+NAI+NKN D K C +Y +LFPCNECAK+IIQ+GIKEVI+M DK+ A++ +F+
Sbjct: 84 LNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFN 143
Query: 61 AAKVHY 66
A V +
Sbjct: 144 MAGVTF 149
>pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVV|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|C Chain C, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
Length = 184
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 17/140 (12%)
Query: 68 SEMDKMNGVQN---GSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKI 124
S M M G Q GS R L W +YFMA+A L++KRS VGAV+V ++N+I
Sbjct: 19 SHMASMTGGQQMGRGSMTNR----LSWQDYFMANAELISKRSTCNRAYVGAVLV-KNNRI 73
Query: 125 VGTGYNGMPIGCSDDEFPWDKNTHDELDMC----HAEMNAILN--KNSADTKRCKLYTSL 178
+ TGYNG G +D + D E C HAEMNA++ K ++Y +
Sbjct: 74 IATGYNG---GVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISANNTEIYVTH 130
Query: 179 FPCNECAKVIIQSGIKEVIY 198
FPC C K ++Q+G+K++ Y
Sbjct: 131 FPCINCTKALLQAGVKKITY 150
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 1 MNAILN--KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 41
MNA++ K ++Y + FPC C K ++Q+G+K++ Y
Sbjct: 108 MNALIQCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITY 150
>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
Deaminase, Mutant R115e
Length = 193
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 42/141 (29%)
Query: 99 AFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSD--DEFPW---------- 143
A+LV++ SK +VGAVI ++ +I+ TGYNG P G C D E W
Sbjct: 10 AYLVSQESKCCSWKVGAVI-EKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAII 68
Query: 144 ---------------------DKNTHDEL---DMCHAEMNAIL--NKNSADTKRCKLYTS 177
++ H E + HAE+NAIL +N + + +Y +
Sbjct: 69 QGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVT 128
Query: 178 LFPCNECAKVIIQSGIKEVIY 198
L PC +CAK I QSGIK+++Y
Sbjct: 129 LSPCPDCAKAIAQSGIKKLVY 149
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 1 MNAIL--NKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPA 51
+NAIL +N + + +Y +L PC +CAK I QSGIK+++Y K KP
Sbjct: 107 LNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPG 159
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
pdb|1Z3A|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
Length = 168
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 92 HEYFMASAFLVAKRSKDPV-TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
HEY+M A +AKR+ D VGAV+V+ +N+++G G+N PIG D H E
Sbjct: 9 HEYWMRHALTLAKRAWDEREVPVGAVLVH-NNRVIGEGWN-RPIGRH------DPTAHAE 60
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ + N D LY +L PC CA +I S I V++
Sbjct: 61 IMALRQGGLVMQNYRLID---ATLYVTLEPCVMCAGAMIHSRIGRVVF 105
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase
From Salmonella Enterica
Length = 183
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 92 HEYFMASAFLVAKRSKDPV-TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
HEY+M A +AKR+ D VGAV+V+ +++++G G+N PIG D H E
Sbjct: 19 HEYWMRHALTLAKRAWDEREVPVGAVLVH-NHRVIGEGWN-RPIGRH------DPTAHAE 70
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ + N DT LY +L PC CA ++ S I V++
Sbjct: 71 IMALRQGGLVLQNYRLLDT---TLYVTLEPCVMCAGAMVHSRIGRVVF 115
>pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|4G3M|A Chain A, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|B Chain B, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|C Chain C, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|D Chain D, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
Length = 373
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 29/113 (25%)
Query: 93 EYFMASAFLVAKRSKDPVTR---VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHD 149
EY+M A +AK+ + VGAV+V +D +IVG G H
Sbjct: 15 EYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMG------------------AHL 55
Query: 150 ELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNE------CAKVIIQSGIKEV 196
+ HAE++AI + A + +Y +L PC+ CA++II SGIK V
Sbjct: 56 KYGEAHAEVHAI-HMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRV 107
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 9 SADTKRCKLYTSLFPCNE------CAKVIIQSGIKEV 39
A + +Y +L PC+ CA++II SGIK V
Sbjct: 71 GAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRV 107
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|C Chain C, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|D Chain D, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
Length = 171
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 24/113 (21%)
Query: 93 EYFMASAFLVAKRS-KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL 151
EYF+ A AKR+ + VGA+IV E +I+ +N + +EL
Sbjct: 24 EYFLKVALREAKRAFEKGEVPVGAIIVKE-GEIISKAHNSV----------------EEL 66
Query: 152 D--MCHAEMNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
HAEM AI N+ + C+LY +L PC C+ ++ S I++VI+
Sbjct: 67 KDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIF 119
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 8 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 41
N+ + C+LY +L PC C+ ++ S I++VI+
Sbjct: 86 NTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIF 119
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine
Deaminase From Streptococcus Pyogenes
Length = 179
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 89 LEWHEYFMASAFLVAKRS-KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
LE YFM A +++S + +G VIV +D +I+G G+N
Sbjct: 13 LEEQTYFMQEALKESEKSLQKAEIPIGCVIV-KDGEIIGRGHNA--------------RE 57
Query: 148 HDELDMCHAEMNAILNKNSADTKRCKLYTSLF----PCNECAKVIIQSGIKEVIYMCDKQ 203
+ HAEM AI N+ + L T+LF PC C+ I + I VIY Q
Sbjct: 58 ESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQ 117
>pdb|1YSD|A Chain A, Yeast Cytosine Deaminase Double Mutant
pdb|1YSD|B Chain B, Yeast Cytosine Deaminase Double Mutant
Length = 161
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 99 AFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEM 158
A L K P+ G +I N+D ++G G+N + K + H E+
Sbjct: 25 ALLGYKEGGVPIG--GCLINNKDGSVLGRGHN----------MRFQKGSA----TLHGEI 68
Query: 159 NAILNKNSADTKRCK---LYTSLFPCNECAKVIIQSGI 193
+ + N + K K LYT+L PC+ C II GI
Sbjct: 69 STLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGI 106
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 13 KRCKLYTSLFPCNECAKVIIQSGI 36
K LYT+L PC+ C II GI
Sbjct: 83 KDTTLYTTLSPCDMCTGAIIMYGI 106
>pdb|1YSB|A Chain A, Yeast Cytosine Deaminase Triple Mutant
pdb|1YSB|B Chain B, Yeast Cytosine Deaminase Triple Mutant
Length = 161
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 99 AFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEM 158
A L K P+ G +I N+D ++G G+N + K + H E+
Sbjct: 25 ALLGYKEGGVPIG--GCLINNKDGSVLGRGHN----------MRFQKGSA----TLHGEI 68
Query: 159 NAILNKNSADTKRCK---LYTSLFPCNECAKVIIQSGI 193
+ + N + K K LYT+L PC+ C II GI
Sbjct: 69 STLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGI 106
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 13 KRCKLYTSLFPCNECAKVIIQSGI 36
K LYT+L PC+ C II GI
Sbjct: 83 KDTTLYTTLSPCDMCTGAIIMYGI 106
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|B Chain B, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|C Chain C, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
Length = 159
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 94 YFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDM 153
YFM A AK++ I+ +D++++ +N + T +
Sbjct: 9 YFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHN-------------LRETLQQ-PT 54
Query: 154 CHAEMNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
HAE AI S + C LY +L PC CA I+ S I V+Y D
Sbjct: 55 AHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGAD 106
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 15 CKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHK 47
C LY +L PC CA I+ S I V+Y D K
Sbjct: 77 CTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPK 109
>pdb|2O3K|A Chain A, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
pdb|2O3K|B Chain B, Yeast Cytosine Deaminase D92e Triple Mutant Bound To
Transition State Analogue Hpy
Length = 161
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 19/98 (19%)
Query: 99 AFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEM 158
A L K P+ G +I N+D ++G G+N + K + H E+
Sbjct: 25 ALLGYKEGGVPIG--GCLINNKDGSVLGRGHN----------MRFQKGSA----TLHGEI 68
Query: 159 NAILNKNSADTKRCK---LYTSLFPCNECAKVIIQSGI 193
+ + N + K K LYT+L PC C II GI
Sbjct: 69 STLENCGRLEGKVYKDTTLYTTLSPCEMCTGAIIMYGI 106
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 13 KRCKLYTSLFPCNECAKVIIQSGI 36
K LYT+L PC C II GI
Sbjct: 83 KDTTLYTTLSPCEMCTGAIIMYGI 106
>pdb|1P6O|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1P6O|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase Bound To
4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms.
pdb|1RB7|A Chain A, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate.
pdb|1RB7|B Chain B, Yeast Cytosine Deaminase Crystal Form P212121 With Sodium
Acetate
Length = 161
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 99 AFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEM 158
A L K P+ G +I N+D ++G G+N + K + H E+
Sbjct: 25 AALGYKEGGVPIG--GCLINNKDGSVLGRGHN----------MRFQKGSA----TLHGEI 68
Query: 159 NAILNKNSADTKRCK---LYTSLFPCNECAKVIIQSGI 193
+ + N + K K LYT+L PC+ C II GI
Sbjct: 69 STLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGI 106
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 13 KRCKLYTSLFPCNECAKVIIQSGI 36
K LYT+L PC+ C II GI
Sbjct: 83 KDTTLYTTLSPCDMCTGAIIMYGI 106
>pdb|1OX7|A Chain A, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
pdb|1OX7|B Chain B, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme:
Inorganic Zinc Bound
Length = 161
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 19/98 (19%)
Query: 99 AFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEM 158
A L K P+ G +I N+D ++G G+N F T H E+
Sbjct: 25 AALGYKEGGVPIG--GCLINNKDGSVLGRGHN--------XRFQKGSAT------LHGEI 68
Query: 159 NAILNKNSADTKRCK---LYTSLFPCNECAKVIIQSGI 193
+ + N + K K LYT+L PC+ C II GI
Sbjct: 69 STLENCGRLEGKVYKDTTLYTTLSPCDXCTGAIIXYGI 106
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 13 KRCKLYTSLFPCNECAKVIIQSGI 36
K LYT+L PC+ C II GI
Sbjct: 83 KDTTLYTTLSPCDXCTGAIIXYGI 106
>pdb|1UAQ|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase
pdb|1UAQ|B Chain B, The Crystal Structure Of Yeast Cytosine Deaminase
Length = 158
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 99 AFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEM 158
A L K P+ G +I N+D ++G G+N + K + H E+
Sbjct: 22 AALGYKEGGVPIG--GCLINNKDGSVLGRGHN----------MRFQKGSA----TLHGEI 65
Query: 159 NAILNKNSADTKRCK---LYTSLFPCNECAKVIIQSGI 193
+ + N + K K LYT+L PC+ C II GI
Sbjct: 66 STLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGI 103
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 13 KRCKLYTSLFPCNECAKVIIQSGI 36
K LYT+L PC+ C II GI
Sbjct: 80 KDTTLYTTLSPCDMCTGAIIMYGI 103
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 115 AVIVNEDNKIVGTGYNGMP-IGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCK 173
AV + + G GYNG+P D+ P+ KN ++ ++ L + K
Sbjct: 177 AVFIATXQAVSGAGYNGVPSXAILDNLIPFIKNEEEKXQTESLKLLGTLKDGKVELANFK 236
Query: 174 LYTSLFPCNECAKVIIQSGIKEVIYMCDKQ 203
+ S C +V + G E I++ K+
Sbjct: 237 ISAS------CNRVAVIDGHTESIFVKTKE 260
>pdb|1TIY|A Chain A, X-Ray Structure Of Guanine Deaminase From Bacillus
Subtilis Northeast Structural Genomics Consortium Target
Sr160
pdb|1TIY|B Chain B, X-Ray Structure Of Guanine Deaminase From Bacillus
Subtilis Northeast Structural Genomics Consortium Target
Sr160
Length = 164
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 21/116 (18%)
Query: 92 HEYFMASAFLVAKRSKDPVT--RVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHD 149
HE F+ A +A + GAVIV +D I+ G N + S+D
Sbjct: 3 HETFLKRAVTLACEGVNAGIGGPFGAVIV-KDGAIIAEGQNN--VTTSNDP--------- 50
Query: 150 ELDMCHAEMNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
HAE+ AI + C LYTS PC C I + K V Y +
Sbjct: 51 ---TAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPXCLGAIYWARPKAVFYAAE 103
>pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
pdb|1WKQ|B Chain B, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
Length = 164
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 21/116 (18%)
Query: 92 HEYFMASAFLVAKRSKDPVTR--VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHD 149
HE F+ A +A + GAVIV +D I+ G N + S+D
Sbjct: 11 HETFLKRAVTLACEGVNAGIGGPFGAVIV-KDGAIIAEGQNN--VTTSNDP--------- 58
Query: 150 ELDMCHAEMNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
HAE+ AI + C LYTS PC C I + K V Y +
Sbjct: 59 ---TAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAE 111
>pdb|2G84|A Chain A, Cytidine And Deoxycytidylate Deaminase Zinc-Binding Region
From Nitrosomonas Europaea.
pdb|2G84|B Chain B, Cytidine And Deoxycytidylate Deaminase Zinc-Binding Region
From Nitrosomonas Europaea
Length = 197
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 155 HAEMNAI-LNKNSADT--------KRCKLYTSLFPCNECAKVIIQSGIKEVI 197
HAE+ A+ L + DT C+L TS PC C +I SG++ ++
Sbjct: 79 HAEILALSLAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLV 130
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 15 CKLYTSLFPCNECAKVIIQSGIKEVI 40
C+L TS PC C +I SG++ ++
Sbjct: 105 CELVTSAEPCVMCFGAVIWSGVRSLV 130
>pdb|1FS9|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes-Azide Complex
Length = 507
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 37 KEVIYMCDKHKQKPATIAS------KRMFDAAKVHYWSEMDKMNGVQNGSP 81
KE + D K+KPA + + + ++A + HY++ D +N ++ G+P
Sbjct: 68 KESDNITDMLKEKPALVVAWAGYPFSKDYNAPRGHYYALQDNINTLRTGAP 118
>pdb|3BNG|A Chain A, W. Succinogenes Nrfa Y218f
pdb|3BNH|A Chain A, W. Succinogenes Nrfa Y218f Nitrite Complex
pdb|3BNJ|A Chain A, W. Succinogenes Nrfa Y218f Sulfite Complex
Length = 485
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 37 KEVIYMCDKHKQKPATIAS------KRMFDAAKVHYWSEMDKMNGVQNGSP 81
KE + D K+KPA + + + ++A + HY++ D +N ++ G+P
Sbjct: 46 KESDNITDMLKEKPALVVAWAGYPFSKDYNAPRGHYYALQDNINTLRTGAP 96
>pdb|1FS7|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes
pdb|1FS8|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes-Sulfate Complex
pdb|2E80|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes With Bound Substrate Nitrite
pdb|2E81|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes With Bound Intermediate Hydroxylamine
pdb|3BNF|A Chain A, W. Succinogenes Nrfa Sulfite Complex
Length = 485
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 37 KEVIYMCDKHKQKPATIAS------KRMFDAAKVHYWSEMDKMNGVQNGSP 81
KE + D K+KPA + + + ++A + HY++ D +N ++ G+P
Sbjct: 46 KESDNITDMLKEKPALVVAWAGYPFSKDYNAPRGHYYALQDNINTLRTGAP 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,016,360
Number of Sequences: 62578
Number of extensions: 236112
Number of successful extensions: 519
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 44
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)