BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6804
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M9G0|DCTD_RAT Deoxycytidylate deaminase OS=Rattus norvegicus GN=Dctd PE=2 SV=1
Length = 178
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 99/125 (79%), Gaps = 5/125 (4%)
Query: 83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD P
Sbjct: 7 KKRDDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLP 66
Query: 143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
W + ++LD +CHAE+NAI+NKNSAD K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct: 67 WRRTAENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVI 126
Query: 198 YMCDK 202
+M DK
Sbjct: 127 FMSDK 131
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 50/66 (75%)
Query: 1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFD 60
+NAI+NKNSAD K C +Y +LFPCNECAK+IIQ+GIKEVI+M DK+ T A++ +F
Sbjct: 87 LNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSEETTAARLLFK 146
Query: 61 AAKVHY 66
A V +
Sbjct: 147 LAGVTF 152
>sp|Q8K2D6|DCTD_MOUSE Deoxycytidylate deaminase OS=Mus musculus GN=Dctd PE=2 SV=1
Length = 178
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 99/125 (79%), Gaps = 5/125 (4%)
Query: 83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD P
Sbjct: 7 KKRDDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLP 66
Query: 143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
W + ++LD +CHAE+NAI+NKNSAD K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct: 67 WRRTAENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVI 126
Query: 198 YMCDK 202
+M DK
Sbjct: 127 FMSDK 131
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 50/66 (75%)
Query: 1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFD 60
+NAI+NKNSAD K C +Y +LFPCNECAK+IIQ+GIKEVI+M DK+ T A++ +F
Sbjct: 87 LNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSEETTAARLLFK 146
Query: 61 AAKVHY 66
A V +
Sbjct: 147 LAGVTF 152
>sp|Q5RC69|DCTD_PONAB Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD PE=2 SV=1
Length = 178
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 99/125 (79%), Gaps = 5/125 (4%)
Query: 83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD+ P
Sbjct: 7 KKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDQLP 66
Query: 143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
W + ++LD +CHAE+NAI+NKNS D K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct: 67 WRRTAKNKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVI 126
Query: 198 YMCDK 202
+M DK
Sbjct: 127 FMSDK 131
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 49/66 (74%)
Query: 1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFD 60
+NAI+NKNS D K C +Y +LFPCNECAK+IIQ+GIKEVI+M DK+ A++ +FD
Sbjct: 87 LNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFD 146
Query: 61 AAKVHY 66
A V +
Sbjct: 147 MAGVTF 152
>sp|P32321|DCTD_HUMAN Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2
Length = 178
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 98/125 (78%), Gaps = 5/125 (4%)
Query: 83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD P
Sbjct: 7 KKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLP 66
Query: 143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
W + ++LD +CHAE+NAI+NKNS D K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct: 67 WRRTAENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVI 126
Query: 198 YMCDK 202
+M DK
Sbjct: 127 FMSDK 131
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%)
Query: 1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFD 60
+NAI+NKNS D K C +Y +LFPCNECAK+IIQ+GIKEVI+M DK+ A++ +F+
Sbjct: 87 LNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFN 146
Query: 61 AAKVHY 66
A V +
Sbjct: 147 MAGVTF 152
>sp|Q9VWA2|DCTD_DROME Probable deoxycytidylate deaminase OS=Drosophila melanogaster
GN=CG6951 PE=2 SV=1
Length = 203
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 87/131 (66%), Gaps = 11/131 (8%)
Query: 82 HKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEF 141
HKR + L W +YFMA++ L AKRSKDPVT+VGA IV+ N+IV GYNG P CSDD F
Sbjct: 20 HKR-KEYLHWDDYFMATSLLSAKRSKDPVTQVGACIVDSQNRIVAIGYNGFPRNCSDDVF 78
Query: 142 PWDK-----NTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQS 191
PW K D L+ + HAE NAILN N +LYT+LFPCNECAK+IIQ
Sbjct: 79 PWSKAKKGSQEFDPLEDKKMYVVHAEANAILNSNGMSLSGTRLYTTLFPCNECAKLIIQV 138
Query: 192 GIKEVIYMCDK 202
GI +V+Y+ DK
Sbjct: 139 GISQVLYLSDK 149
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 45/65 (69%)
Query: 2 NAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDA 61
NAILN N +LYT+LFPCNECAK+IIQ GI +V+Y+ DK+ KP ASKRM DA
Sbjct: 106 NAILNSNGMSLSGTRLYTTLFPCNECAKLIIQVGISQVLYLSDKYADKPTYRASKRMLDA 165
Query: 62 AKVHY 66
V Y
Sbjct: 166 VGVEY 170
>sp|P30648|DCTD_CAEEL Probable deoxycytidylate deaminase OS=Caenorhabditis elegans
GN=ZK643.2 PE=3 SV=1
Length = 197
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Query: 60 DAAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVN 119
D+A +H E K+N + + L+ H+ F+ A + + RSKDP T+VG VIV+
Sbjct: 19 DSANLHTTLERLKININSDAKKLVDTNGDLKKHQRFLRIAKVTSLRSKDPNTQVGCVIVD 78
Query: 120 EDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE---LDMCHAEMNAILNKNSADTKRCKLYT 176
+DN IV GYNG PIG DD F WDK ++ L + HAEMNAI+NK C +Y
Sbjct: 79 KDNCIVSVGYNGFPIGVDDDVFRWDKEDPEDNKHLYVVHAEMNAIINKRCTTLHDCTVYV 138
Query: 177 SLFPCNECAKVIIQSGIKEVIYM 199
+LFPCN+CA+++IQS +K+V ++
Sbjct: 139 TLFPCNKCAQMLIQSRVKKVYFL 161
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFD 60
MNAI+NK C +Y +LFPCN+CA+++IQS +K+V ++ +++ + A ASK+M D
Sbjct: 120 MNAIINKRCTTLHDCTVYVTLFPCNKCAQMLIQSRVKKVYFL--ENRDELAFRASKKMLD 177
Query: 61 AAKVHY 66
A++ Y
Sbjct: 178 HARLPY 183
>sp|P33968|YLXG_VIBFI Uncharacterized deaminase in luxG 3'region OS=Vibrio fischeri PE=3
SV=1
Length = 147
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 88 VLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
+ +W + F A LV SKDP T+VGAVI + N+IV G+NG P G SD D+
Sbjct: 2 ISKWAKRFFQMAELVGSWSKDPSTQVGAVI-TKHNRIVSVGFNGYPHGVSDSADT-DERE 59
Query: 148 HDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEV 196
L HAE NAIL D + C ++ + FPC CA IIQ+GI +V
Sbjct: 60 IKYLKTLHAEENAILFAKR-DLEGCDIWVTHFPCPNCAAKIIQTGISKV 107
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 2 NAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEV 39
NAIL D + C ++ + FPC CA IIQ+GI +V
Sbjct: 71 NAILFAKR-DLEGCDIWVTHFPCPNCAAKIIQTGISKV 107
>sp|P32393|COMEB_BACSU ComE operon protein 2 OS=Bacillus subtilis (strain 168) GN=comEB
PE=3 SV=1
Length = 189
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 10/119 (8%)
Query: 89 LEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSDDE-FPWD 144
+ W++YFMA + L+A RS P VGA IV D +++ GYNG G C+D+ D
Sbjct: 4 ISWNQYFMAQSHLLALRSTCPRLSVGATIVR-DKRMIAGGYNGSIAGGVHCADEGCLMID 62
Query: 145 KNTHDELDMCHAEMNAIL--NKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
+ + HAEMNAIL +K T ++Y + +PC +C K IIQ+GIK V Y D
Sbjct: 63 DHCARTI---HAEMNAILQCSKFGVPTDGAEIYVTHYPCIQCCKSIIQAGIKTVYYAED 118
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 1 MNAIL--NKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRM 58
MNAIL +K T ++Y + +PC +C K IIQ+GIK V Y D +K P ++ +
Sbjct: 73 MNAILQCSKFGVPTDGAEIYVTHYPCIQCCKSIIQAGIKTVYYAED-YKTHP---YAQEL 128
Query: 59 FDAAKVHYWS-EMDKM 73
F+ A V E+D+M
Sbjct: 129 FEQAGVTVEQVELDEM 144
>sp|O43012|DCTD_SCHPO Deoxycytidylate deaminase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPBC2G2.13c PE=3 SV=2
Length = 322
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 63 KVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDN 122
K+H W ++ K + + +P++ W YFM A L AKRS RVG V+V N
Sbjct: 152 KLHLWEKLQKADLL---NPNRFRPS---WDSYFMEMASLAAKRSNCMKRRVGCVLV-RGN 204
Query: 123 KIVGTGYNGMPIG---CSDDEFPWDKNTHD---ELDMC---HAEMNAILNKNSADT-KRC 172
+++ TGYNG P G C++ P + ELD C HAE NA+L
Sbjct: 205 RVIATGYNGTPRGATNCNEGGCPRCNSASSCGKELDTCLCLHAEENALLEAGRERVGNNA 264
Query: 173 KLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204
LY PC C+ I Q GIKEV+Y M
Sbjct: 265 ILYCDTCPCLTCSVKITQLGIKEVVYHTSYNM 296
>sp|O22000|DCTD_BPMD2 Deoxycytidylate deaminase OS=Mycobacterium phage D29 GN=36.1 PE=3
SV=2
Length = 128
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 13/121 (10%)
Query: 90 EWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CS------DDE 140
+W EYF+ A A+RS ++VGAV+V +D ++ GTGYNG P G CS
Sbjct: 5 DWDEYFLGIATAAAQRSDCERSKVGAVVV-KDRRVRGTGYNGAPAGAAGCSTCPRRLSGA 63
Query: 141 FPWDKNTHDELDMC---HAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
P + C HAE NA+L + D LY + PC C+ +I SGI+ V+
Sbjct: 64 VPGVSDYSSGATRCVAVHAEANALLYCDREDLIGATLYVTREPCYACSNLIAASGIERVV 123
Query: 198 Y 198
Y
Sbjct: 124 Y 124
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 2 NAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 41
NA+L + D LY + PC C+ +I SGI+ V+Y
Sbjct: 85 NALLYCDREDLIGATLYVTREPCYACSNLIAASGIERVVY 124
>sp|P06773|DCTD_YEAST Deoxycytidylate deaminase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=DCD1 PE=1 SV=2
Length = 312
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 91 WHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMP---IGCSDDEFPW---- 143
W YFM A L A RS RVG VIV E +++ TGYNG P C + P
Sbjct: 163 WDSYFMKLATLAASRSNCMKRRVGCVIVRE-CRVIATGYNGTPRHLTNCFNGGCPRCNDG 221
Query: 144 -DKNTHDELDMCHAEMNAILNKNSADT-KRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+N H L + HAE NA+L + LY PC C+ I+Q+GI EV+Y
Sbjct: 222 DSRNLHTCLCL-HAEENALLEAGRDRVGQNATLYCDTCPCLTCSVKIVQTGISEVVY 277
>sp|P16006|DCTD_BPT4 Deoxycytidylate deaminase OS=Enterobacteria phage T4 GN=CD PE=1
SV=1
Length = 193
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 42/141 (29%)
Query: 99 AFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSD--DEFPW---------- 143
A+LV++ SK +VGAVI ++ +I+ TGYNG P G C D E W
Sbjct: 10 AYLVSQESKCCSWKVGAVI-EKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAII 68
Query: 144 ---------------------DKNTHDEL---DMCHAEMNAIL--NKNSADTKRCKLYTS 177
++ H E + HAE+NAIL +N + + +Y +
Sbjct: 69 QGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAARNGSSIEGATMYVT 128
Query: 178 LFPCNECAKVIIQSGIKEVIY 198
L PC +CAK I QSGIK+++Y
Sbjct: 129 LSPCPDCAKAIAQSGIKKLVY 149
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 1 MNAIL--NKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPA 51
+NAIL +N + + +Y +L PC +CAK I QSGIK+++Y K KP
Sbjct: 107 LNAILFAARNGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPG 159
>sp|P00814|DCTD_BPT2 Deoxycytidylate deaminase OS=Enterobacteria phage T2 GN=CD PE=1
SV=1
Length = 188
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 42/141 (29%)
Query: 99 AFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGC---------------------- 136
A+LV++ SK +VGAVI ++ +I+ TGYNG P G
Sbjct: 10 AYLVSQESKCCSWKVGAVI-EKNGRIISTGYNGSPAGGVNCDNYAAIEGWLLNKPKHTII 68
Query: 137 -----------SDDEFPWDK---NTHDEL---DMCHAEMNAIL--NKNSADTKRCKLYTS 177
+ D F K + H E + HAE+NAIL +N + + +Y +
Sbjct: 69 QGHKPECVSFGTSDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAARNGSSIEGATMYVT 128
Query: 178 LFPCNECAKVIIQSGIKEVIY 198
L PC +CAK I QSGIK+++Y
Sbjct: 129 LSPCPDCAKAIAQSGIKKLVY 149
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 1 MNAIL--NKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPA 51
+NAIL +N + + +Y +L PC +CAK I QSGIK+++Y K KP
Sbjct: 107 LNAILFAARNGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPG 159
>sp|Q8BMD5|CDAC1_MOUSE Cytidine and dCMP deaminase domain-containing protein 1 OS=Mus
musculus GN=Cdadc1 PE=2 SV=1
Length = 523
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 24/149 (16%)
Query: 66 YWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNK-- 123
Y S +++N + N S + V + M A L+A R++D T VGAVI E
Sbjct: 300 YCSSPEQINEIHNQSLPQEV------ARHCMVQARLLAYRTEDHKTGVGAVIWAEAKSRS 353
Query: 124 --------IVGTGYNGMPIGCSDDEFPWDKNTHDELDM------CHAEMNAILNK--NSA 167
+G GYN P+G +FP + H + ++ HAE NA+ + +
Sbjct: 354 CDGTGAMYFIGCGYNAFPVGSEYADFPHMDDKHKDREIRKFRYIIHAEQNALTFRCQDIK 413
Query: 168 DTKRCKLYTSLFPCNECAKVIIQSGIKEV 196
+R ++ + PC+EC +I +GIK++
Sbjct: 414 PEERSMIFVTKCPCDECVPLIKGAGIKQI 442
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 5 LNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 41
L K+ + K C LY S PC+ C K+I+ +G+ + Y
Sbjct: 116 LIKHGSRLKNCDLYFSRKPCSACLKMIVNAGVNRISY 152
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 162 LNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
L K+ + K C LY S PC+ C K+I+ +G+ + Y
Sbjct: 116 LIKHGSRLKNCDLYFSRKPCSACLKMIVNAGVNRISY 152
>sp|Q9BWV3|CDAC1_HUMAN Cytidine and dCMP deaminase domain-containing protein 1 OS=Homo
sapiens GN=CDADC1 PE=2 SV=1
Length = 514
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 24/149 (16%)
Query: 66 YWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNK-- 123
Y S +++N + N S + E + M A L+A R++D T VGAVI E
Sbjct: 299 YRSNPEQINEIHNQSLPQ------EIARHCMVQARLLAYRTEDHKTGVGAVIWAEGKSRS 352
Query: 124 --------IVGTGYNGMPIGCSDDEFPW--DKNTHDELD----MCHAEMNAILNK--NSA 167
VG GYN P+G +FP DK E+ + HAE NA+ +
Sbjct: 353 CDGTGAMYFVGCGYNAFPVGSEYADFPHMDDKQKDREIRKFRYIIHAEQNALTFRCQEIK 412
Query: 168 DTKRCKLYTSLFPCNECAKVIIQSGIKEV 196
+R ++ + PC+EC +I +GIK++
Sbjct: 413 PEERSMIFVTKCPCDECVPLIKGAGIKQI 441
Score = 37.4 bits (85), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 22/92 (23%)
Query: 107 KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNS 166
K V R G V+V ++ KIVG + CS ++ HA A++ K+
Sbjct: 82 KRQVKRTGLVVV-KNMKIVG-------LHCSSEDL-------------HAGQIALI-KHG 119
Query: 167 ADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ K C LY S PC+ C K+I+ +G+ + Y
Sbjct: 120 SRLKNCDLYFSRKPCSACLKMIVNAGVNRISY 151
Score = 33.5 bits (75), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 5 LNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 41
L K+ + K C LY S PC+ C K+I+ +G+ + Y
Sbjct: 115 LIKHGSRLKNCDLYFSRKPCSACLKMIVNAGVNRISY 151
>sp|Q5RAX4|CDAC1_PONAB Cytidine and dCMP deaminase domain-containing protein 1 OS=Pongo
abelii GN=CDADC1 PE=2 SV=1
Length = 515
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 24/149 (16%)
Query: 66 YWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNK-- 123
Y S +++N + N S + E + M A L+A R++D T VGAVI E
Sbjct: 300 YRSNPEQINEIHNQSLPQ------EIARHCMVQARLLAYRTEDHKTGVGAVIWAEGKSRS 353
Query: 124 --------IVGTGYNGMPIGCSDDEFPW--DKNTHDELD----MCHAEMNAILNK--NSA 167
VG GYN P+G +FP DK E+ + HAE NA+ +
Sbjct: 354 CDGTGAMYFVGCGYNAFPVGSEYADFPHMDDKQKDREIRKFRYIIHAERNALTFRCQEIK 413
Query: 168 DTKRCKLYTSLFPCNECAKVIIQSGIKEV 196
+R ++ + PC+EC +I +GIK++
Sbjct: 414 PEERSMIFVTKCPCDECVPLIKGAGIKQI 442
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 22/92 (23%)
Query: 107 KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNS 166
K V R G V+V ++ KIVG + CS ++ HA A++ K+
Sbjct: 83 KRQVKRTGLVVV-KNMKIVG-------LHCSSEDL-------------HAGQIALI-KHG 120
Query: 167 ADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ K C LY S PC+ C K+I+ +G+ + Y
Sbjct: 121 SRLKNCDLYFSRKPCSACLKMIVNAGVNRISY 152
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 5 LNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 41
L K+ + K C LY S PC+ C K+I+ +G+ + Y
Sbjct: 116 LIKHGSRLKNCDLYFSRKPCSACLKMIVNAGVNRISY 152
>sp|Q4R683|CDAC1_MACFA Cytidine and dCMP deaminase domain-containing protein 1 OS=Macaca
fascicularis GN=CDADC1 PE=2 SV=1
Length = 515
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 24/149 (16%)
Query: 66 YWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNK-- 123
Y S +++N + N S + E + M A L+A R++D T VGAVI E
Sbjct: 300 YCSNPEQINEIHNQSLPQ------EIARHCMVQARLLAYRTEDHKTGVGAVIWAEGKSRS 353
Query: 124 --------IVGTGYNGMPIGCSDDEFPW--DKNTHDELD----MCHAEMNAILNK--NSA 167
VG GYN P+G +FP DK E+ + HAE NA+ +
Sbjct: 354 CDGTGAMYFVGCGYNAFPVGSEYADFPHMDDKQKDREIRKFRYIIHAEQNALTFRCQEIK 413
Query: 168 DTKRCKLYTSLFPCNECAKVIIQSGIKEV 196
+R ++ + PC+EC +I +GIK++
Sbjct: 414 PEERSMIFVTKCPCDECVPLIKGAGIKQI 442
Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 22/92 (23%)
Query: 107 KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNS 166
K V R G V+V ++ KIVG + CS ++ HA A++ K+
Sbjct: 83 KRQVKRTGLVVV-KNMKIVG-------LHCSSEDL-------------HAGQIALI-KHG 120
Query: 167 ADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ K C LY S PC+ C K+I+ +G+ + Y
Sbjct: 121 SRLKNCDLYFSRKPCSACLKMIVNAGVNRISY 152
Score = 33.5 bits (75), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 5 LNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 41
L K+ + K C LY S PC+ C K+I+ +G+ + Y
Sbjct: 116 LIKHGSRLKNCDLYFSRKPCSACLKMIVNAGVNRISY 152
>sp|Q5U3U4|CDAC1_DANRE Cytidine and dCMP deaminase domain-containing protein 1 OS=Danio
rerio GN=cdadc1 PE=2 SV=1
Length = 471
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 21/122 (17%)
Query: 99 AFLVAKRSKDPVTRVGAVIVNEDNK----------IVGTGYNGMPIGCSDDEFPWDKNTH 148
A L+A R++DP VGAVI E + +VG GYN P+G E+P +
Sbjct: 321 ARLLACRTEDPKVGVGAVIWAEGKQSQCDGTGQLYLVGCGYNAYPVGSQYAEYPQMDHKQ 380
Query: 149 DELD------MCHAEMNAILNKNSADTK---RCKLYTSLFPCNECAKVIIQSGIKEVIYM 199
+E + HAE NA L SA+ K ++ + PC+EC +I +GIK+ IY
Sbjct: 381 EERQNRKYRYILHAEQNA-LTFRSAEIKAEDNTMMFVTKCPCDECVPLIGCAGIKQ-IYT 438
Query: 200 CD 201
D
Sbjct: 439 TD 440
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 155 HAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
HA A++ K+ K C+LY S PC+ C K++I +G+ + Y
Sbjct: 99 HAGQVAVV-KHGPRLKSCELYFSRKPCSTCLKMLINAGVSRISY 141
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 7 KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 41
K+ K C+LY S PC+ C K++I +G+ + Y
Sbjct: 107 KHGPRLKSCELYFSRKPCSTCLKMLINAGVSRISY 141
>sp|P68397|TADA_SHIFL tRNA-specific adenosine deaminase OS=Shigella flexneri GN=tadA PE=3
SV=2
Length = 167
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 92 HEYFMASAFLVAKRSKDPV-TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
HEY+M A +AKR+ D VGAV+V+ +N+++G G+N PIG D H E
Sbjct: 8 HEYWMRHALTLAKRAWDEREVPVGAVLVH-NNRVIGEGWN-RPIGRH------DPTAHAE 59
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ + N D LY +L PC CA +I S I V++
Sbjct: 60 IMALRQGGLVMQNYRLID---ATLYVTLEPCVMCAGAMIHSRIGRVVF 104
>sp|P68398|TADA_ECOLI tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12)
GN=tadA PE=1 SV=2
Length = 167
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 92 HEYFMASAFLVAKRSKDPV-TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
HEY+M A +AKR+ D VGAV+V+ +N+++G G+N PIG D H E
Sbjct: 8 HEYWMRHALTLAKRAWDEREVPVGAVLVH-NNRVIGEGWN-RPIGRH------DPTAHAE 59
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ + N D LY +L PC CA +I S I V++
Sbjct: 60 IMALRQGGLVMQNYRLID---ATLYVTLEPCVMCAGAMIHSRIGRVVF 104
>sp|Q8FF24|TADA_ECOL6 tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tadA PE=3 SV=2
Length = 167
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 92 HEYFMASAFLVAKRSKDPV-TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
HEY+M A +AKR+ D VGAV+V+ +N+++G G+N PIG D H E
Sbjct: 8 HEYWMRHAMTLAKRAWDEREVPVGAVLVH-NNRVIGEGWN-RPIGRH------DPTAHAE 59
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ + N D LY +L PC CA +I S I V++
Sbjct: 60 IMALRQGGLVMQNYRLID---ATLYVTLEPCVMCAGAMIHSRIGRVVF 104
>sp|Q8XA44|TADA_ECO57 tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7
GN=tadA PE=3 SV=2
Length = 167
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 92 HEYFMASAFLVAKRSKDPV-TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
HEY+M A +AKR+ D VGAV+V+ +N+++G G+N PIG D H E
Sbjct: 8 HEYWMRHAMTLAKRAWDEREVPVGAVLVH-NNRVIGEGWN-RPIGRH------DPTAHAE 59
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ + N D LY +L PC CA +I S I V++
Sbjct: 60 IMALRQGGLVMQNYRLID---ATLYVTLEPCVMCAGAMIHSRIGRVVF 104
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2
Length = 172
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 92 HEYFMASAFLVAKRSKDPV-TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
HEY+M A +AKR+ D VGAV+V+ +++++G G+N PIG D H E
Sbjct: 8 HEYWMRHALTLAKRAWDEREVPVGAVLVH-NHRVIGEGWN-RPIGRH------DPTAHAE 59
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ + N DT LY +L PC CA ++ S I V++
Sbjct: 60 IMALRQGGLVLQNYRLLDT---TLYVTLEPCVMCAGAMVHSRIGRVVF 104
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3
SV=2
Length = 172
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 92 HEYFMASAFLVAKRSKDPV-TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
HEY+M A +AKR+ D VGAV+V+ +++++G G+N PIG D H E
Sbjct: 8 HEYWMRHALTLAKRAWDEREVPVGAVLVH-NHRVIGEGWN-RPIGRH------DPTAHAE 59
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ + N DT LY +L PC CA ++ S I V++
Sbjct: 60 IMALRQGGLVLQNYRLLDT---TLYVTLEPCVMCAGAMVHSRIGRVVF 104
>sp|P70814|RIBD_BACAM Riboflavin biosynthesis protein RibD OS=Bacillus amyloliquefaciens
GN=ribD PE=3 SV=1
Length = 371
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 29/118 (24%)
Query: 93 EYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHD 149
EY+M +A +A+R + P VGAV+V + +IVG G H
Sbjct: 3 EYYMNTAIELARRGEGQTQPNPLVGAVVVKK-RQIVGMG------------------AHL 43
Query: 150 ELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNE------CAKVIIQSGIKEVIYMCD 201
+ HAE++AI N + K LY +L PC+ CA++I++SGIK V +
Sbjct: 44 QYGEAHAEVHAI-NMAGSLAKGADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVE 100
>sp|O59834|FCYS_SCHPO Probable cytosine deaminase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPCC965.14c PE=3 SV=1
Length = 162
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
Query: 95 FMASAFLVAKRSKDPVTR-VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDM 153
++ A V+++++D G +IV+E++ ++ + N +P G D H E
Sbjct: 13 YLREAIKVSQQARDEGQHPFGCIIVDENDNVIMSAGNRVPDG--------DVTQHAETRA 64
Query: 154 CHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
++ K D ++C LYTS PC C+ I SGI+ +I+
Sbjct: 65 V-----GLITKTRRDLEKCTLYTSTEPCAMCSGAIFWSGIRRMIF 104
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 3 AILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 41
++ K D ++C LYTS PC C+ I SGI+ +I+
Sbjct: 66 GLITKTRRDLEKCTLYTSTEPCAMCSGAIFWSGIRRMIF 104
>sp|Q9S7I0|TADA_ARATH tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis
thaliana GN=TADA PE=1 SV=1
Length = 1307
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 93 EYFMASAFLVAKRSKDP-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL 151
E FM A + AK++ D VGAV+V+ D KI+ GYN + E D H E+
Sbjct: 1111 EIFMREALVEAKKAADTWEVPVGAVLVH-DGKIIARGYNLV-------EELRDSTAHAEM 1162
Query: 152 DMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
A+ + ADT LY +L PC CA I+Q+ + +++
Sbjct: 1163 ICIREGSKALRSWRLADT---TLYVTLEPCPMCAGAILQARVNTLVW 1206
>sp|Q8K9A4|RIBD1_BUCAP Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=ribD1 PE=3 SV=1
Length = 147
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 29/114 (25%)
Query: 93 EYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHD 149
++M A ++K + P VG VIV ++ KIVG G+ H
Sbjct: 4 RFYMTRAIKLSKLGEFTTSPNPNVGCVIV-QNKKIVGEGW------------------HK 44
Query: 150 ELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNE------CAKVIIQSGIKEVI 197
+ HAE+NA LN K Y +L PCN C IIQSGIK VI
Sbjct: 45 KYGENHAEINA-LNMAGEKAKGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVI 97
>sp|P17618|RIBD_BACSU Riboflavin biosynthesis protein RibD OS=Bacillus subtilis (strain
168) GN=ribD PE=1 SV=1
Length = 361
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 29/113 (25%)
Query: 93 EYFMASAFLVAKRSKDPVTR---VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHD 149
EY+M A +AK+ + VGAV+V +D +IVG G H
Sbjct: 3 EYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMG------------------AHL 43
Query: 150 ELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNE------CAKVIIQSGIKEV 196
+ HAE++AI + A + +Y +L PC+ CA++II SGIK V
Sbjct: 44 KYGEAHAEVHAI-HMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRV 95
>sp|O24750|RIBD_CORAM Riboflavin biosynthesis protein RibD OS=Corynebacterium
ammoniagenes GN=ribD PE=3 SV=1
Length = 337
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 25/102 (24%)
Query: 104 KRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILN 163
+ + P VGAVI++ +IVGTG P+G HAE+ A+ +
Sbjct: 30 RGTTSPNPPVGAVIISTSGEIVGTGAT-QPVGG-----------------VHAEVQALAD 71
Query: 164 KNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYM 199
+ T+ +L PC C + +I++GIK+V+++
Sbjct: 72 A-AGKTEGATAVVTLEPCRHTGRTGPCTQALIEAGIKDVLFL 112
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1
Length = 173
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 113 VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILN--KNSADTK 170
VGAV+V++ I+G G+N + I SD HAE+ A+ N KN + +
Sbjct: 33 VGAVLVDDARNIIGEGWN-LSIVQSDP-------------TAHAEIIALRNGAKNIQNYR 78
Query: 171 --RCKLYTSLFPCNECAKVIIQSGIKEVIY 198
LY +L PC CA I+ S IK +++
Sbjct: 79 LLNSTLYVTLEPCTMCAGAILHSRIKRLVF 108
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 17 LYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASK-RMFDAAKVHYWSEM 70
LY +L PC CA I+ S IK +++ + K I S+ FD K+++ E+
Sbjct: 84 LYVTLEPCTMCAGAILHSRIKRLVFGASDY--KTGAIGSRFHFFDDYKMNHTLEV 136
>sp|P78594|FCA1_CANAX Cytosine deaminase OS=Candida albicans GN=FCA1 PE=3 SV=1
Length = 150
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 113 VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKR- 171
+G+ I++ D+ ++G G+N + + H EM+A+ N K
Sbjct: 27 IGSCIISSDDTVLGQGHN--------------ERIQKHSAILHGEMSALENAGRLPGKTY 72
Query: 172 --CKLYTSLFPCNECAKVIIQSGIKEVI 197
C +YT+L PC+ C I+ G K V+
Sbjct: 73 KDCTIYTTLSPCSMCTGAILLYGFKRVV 100
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 13 KRCKLYTSLFPCNECAKVIIQSGIKEVI 40
K C +YT+L PC+ C I+ G K V+
Sbjct: 73 KDCTIYTTLSPCSMCTGAILLYGFKRVV 100
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5)
GN=tadA PE=1 SV=1
Length = 151
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 24/113 (21%)
Query: 93 EYFMASAFLVAKRS-KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL 151
EYF+ A AKR+ + VGA+IV E +I+ +N + +EL
Sbjct: 4 EYFLKVALREAKRAFEKGEVPVGAIIVKE-GEIISKAHNSV----------------EEL 46
Query: 152 D--MCHAEMNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
HAEM AI N+ + C+LY +L PC C+ ++ S I++VI+
Sbjct: 47 KDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIF 99
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1
Length = 171
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 89 LEWHEYFMASAFLVAKRS-KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
LE YFM A A++S + +G VIV +D +I+G G+N
Sbjct: 5 LEEQTYFMQEALKEAEKSLQKAEIPIGCVIV-KDGEIIGRGHNA--------------RE 49
Query: 148 HDELDMCHAEMNAILNKNSADTKRCKLYTSLF----PCNECAKVIIQSGIKEVIYMCDKQ 203
+ HAEM AI N+ + L T+LF PC C+ I + I VIY Q
Sbjct: 50 ESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQ 109
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA
PE=1 SV=2
Length = 171
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 89 LEWHEYFMASAFLVAKRS-KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
LE YFM A A++S + +G VIV +D +I+G G+N
Sbjct: 5 LEEQTYFMQEALKEAEKSLQKAEIPIGCVIV-KDGEIIGRGHNA--------------RE 49
Query: 148 HDELDMCHAEMNAILNKNSADTKRCKLYTSLF----PCNECAKVIIQSGIKEVIYMCDKQ 203
+ HAEM AI N+ + L T+LF PC C+ I + I VIY Q
Sbjct: 50 ESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQ 109
>sp|P0DA20|TADA_STRP3 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3
SV=1
Length = 171
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 89 LEWHEYFMASAFLVAKRS-KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
LE YFM A A++S + +G VIV +D +I+G G+N
Sbjct: 5 LEEQTYFMQEALKEAEKSLQKAEIPIGCVIV-KDGEIIGRGHNA--------------RE 49
Query: 148 HDELDMCHAEMNAILNKNSADTKRCKLYTSLF----PCNECAKVIIQSGIKEVIYMCDKQ 203
+ HAEM AI N+ + L T+LF PC C+ I + I VIY Q
Sbjct: 50 ESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQ 109
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M1 GN=tadA PE=3 SV=1
Length = 171
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 89 LEWHEYFMASAFLVAKRS-KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
LE YFM A A++S + +G VIV +D +I+G G+N
Sbjct: 5 LEEQTYFMQEALKEAEKSLQKAEIPIGCVIV-KDGEIIGRGHNA--------------RE 49
Query: 148 HDELDMCHAEMNAILNKNSADTKRCKLYTSLF----PCNECAKVIIQSGIKEVIYMCDKQ 203
+ HAEM AI N+ + L T+LF PC C+ I + I VIY Q
Sbjct: 50 ESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQ 109
>sp|Q8P2R7|Y196_STRP8 Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_0196 PE=3 SV=1
Length = 159
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 89 LEWHEYFMASAFLVAKRS-KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
LE YFM A A++S + +G VIV +D +I+G G+N
Sbjct: 5 LEEQTYFMQEALKEAEKSLQKAEIPIGCVIV-KDGEIIGRGHNA--------------RE 49
Query: 148 HDELDMCHAEMNAILNKNSADTKRCKLYTSLF----PCNECAKVIIQSGIKEVIYMCDKQ 203
+ HAEM AI N+ + L T+LF PC C+ I + I VIY Q
Sbjct: 50 ESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQ 109
>sp|Q8K9R4|Y246_BUCAP Uncharacterized protein BUsg_246 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_246 PE=3 SV=1
Length = 151
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 91 WHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
W + + A+ + + P+ GA++V ++ KI+GTG+N + S + D H E
Sbjct: 9 WMKIALKYAYYAEENGEVPI---GAILVFQE-KIIGTGWNSV---ISQN----DSTAHAE 57
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ I N +T LY +L PC C II S IK +++
Sbjct: 58 IIALREAGRNIKNYRLVNTT---LYVTLQPCMMCCGAIINSRIKRLVF 102
>sp|P57343|Y255_BUCAI Uncharacterized protein BU255 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=BU255 PE=3 SV=1
Length = 161
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 91 WHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
W + + A+ ++ + P+ GA++V ++ +I+G G+N S + D H E
Sbjct: 9 WMKIALKYAYYAKEKGEIPI---GAILVFKE-RIIGIGWNS---SISKN----DPTAHAE 57
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
+ I N +T LY +L PC C IIQS IK +++
Sbjct: 58 IIALRGAGKKIKNYRLLNTT---LYVTLQPCIMCCGAIIQSRIKRLVF 102
>sp|C1D1Q9|TILS_DEIDV tRNA(Ile)-lysidine synthase OS=Deinococcus deserti (strain VCD115 /
DSM 17065 / LMG 22923) GN=tilS PE=3 SV=1
Length = 533
Score = 37.4 bits (85), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 113 VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRC 172
VGAV++ +I+G+G N +D D H EL A A +A C
Sbjct: 401 VGAVVLGPGGRIIGSGRN---TSRADS----DMTRHAELAALRA---ATAELGTAYLTGC 450
Query: 173 KLYTSLFPCNECAKVIIQSGIKEVIY 198
L +L PC C +++ ++ ++Y
Sbjct: 451 TLVVTLEPCPMCLGAALEARVERIVY 476
>sp|Q55158|RIBD_SYNY3 Riboflavin biosynthesis protein RibD OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ribD PE=3 SV=1
Length = 368
Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 28/102 (27%)
Query: 102 VAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAI 161
+ K + +P+ VG+VIV D +IVG G+ H + H E+ A+
Sbjct: 19 IGKTAPNPL--VGSVIVQGD-EIVGQGF------------------HPQAGQPHGEIFAL 57
Query: 162 LNKNSADTKRCKLYTSLFPCNE------CAKVIIQSGIKEVI 197
K LY +L PCN C + IIQ+GI +V+
Sbjct: 58 WEAGD-RAKGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVV 98
>sp|Q89AM8|Y236_BUCBP Uncharacterized protein bbp_236 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_236 PE=3 SV=1
Length = 162
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Query: 93 EYFMASAFLVAKRSK-DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL 151
+YFM A +AK S+ VGAV+V +N I+G G N + HD
Sbjct: 6 KYFMKCAIFLAKISEMIGEVPVGAVLV-FNNTIIGKGLNSSILN------------HD-- 50
Query: 152 DMCHAEMNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
HAE+ A+ N + LY +L PC C II S I +++
Sbjct: 51 PTAHAEIKALRNGAKFLKNYRLLHTTLYVTLEPCIMCYGAIIHSRISRLVF 101
>sp|Q1RGK7|Y1426_RICBR Uncharacterized deaminase RBE_1426 OS=Rickettsia bellii (strain
RML369-C) GN=RBE_1426 PE=3 SV=2
Length = 145
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 106 SKDPVTRVGAVIVNEDN-KIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK 164
SK+ V VGAVIV+ +N KI+ YN + E + H E+ + I +K
Sbjct: 13 SKNEVP-VGAVIVDRENQKIISKSYN-------NTEEKNNALYHAEIIAINEACRIISSK 64
Query: 165 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
N +D +Y +L PC CA I S +K + Y
Sbjct: 65 NLSDYD---IYVTLEPCAMCAAAIAHSRLKRLFY 95
>sp|P50853|RIBD_ACTPL Riboflavin biosynthesis protein RibD OS=Actinobacillus
pleuropneumoniae GN=ribD PE=3 SV=2
Length = 376
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 29/111 (26%)
Query: 95 FMASAFLVAKRS---KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL 151
+M A +AK+ +P VG VIV ++ +IV GY H+++
Sbjct: 18 YMRRAIALAKQGLGWTNPNPLVGCVIV-KNGEIVAEGY------------------HEKI 58
Query: 152 DMCHAEMNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEV 196
HAE NA+L+ D Y +L PC C+ ++I+ GIK+V
Sbjct: 59 GGWHAERNAVLHCKE-DLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKV 108
>sp|Q72IF6|TILS_THET2 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=tilS PE=3 SV=1
Length = 507
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 154 CHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
HAEM +L + + + +LY +L PC C + Q+G+ EV+Y +
Sbjct: 419 AHAEM-LLLREAGPEARGGRLYVTLEPCLMCHHALAQAGV-EVVYGAE 464
>sp|Q5SI38|TILS_THET8 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=tilS PE=3 SV=1
Length = 507
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 154 CHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
HAEM +L + + + +LY +L PC C + Q+G+ EV+Y +
Sbjct: 419 AHAEM-LLLREAGPEARGGRLYVTLEPCLMCHHALAQAGV-EVVYGAE 464
>sp|Q9RV23|TILS_DEIRA tRNA(Ile)-lysidine synthase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=tilS PE=3 SV=2
Length = 582
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 113 VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDM-CHAEMNAILNK----NSA 167
VGAV++N D +IVG G N + ++ DM CHAE+ A+ +
Sbjct: 426 VGAVVLNADGEIVGRGRN---------------TSREDGDMTCHAELAALREAAAGLGTP 470
Query: 168 DTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
C L +L PC C +++ I ++Y
Sbjct: 471 YLSDCTLVVTLEPCPMCLGAALEARIGHIVY 501
>sp|P62475|RSMH_PHOPR Ribosomal RNA small subunit methyltransferase H OS=Photobacterium
profundum GN=rsmH PE=3 SV=1
Length = 315
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 36 IKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNG-----SPHKRVDDVLE 90
I +V DKHK PAT R F A +++ SE+D++ NG +P R+ V+
Sbjct: 190 ISDVSPFRDKHKH-PAT----RSFQAIRIYINSELDEIETALNGAVKVLAPQGRL-SVIS 243
Query: 91 WH--EYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGT 127
+H E M F + K SK P G + + K +G+
Sbjct: 244 FHSLEDRMVKRF-IRKNSKGPEVPAGFPLTEDQIKALGS 281
>sp|Q12178|FCY1_YEAST Cytosine deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=FCY1 PE=1 SV=1
Length = 158
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 99 AFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEM 158
A L K P+ G +I N+D ++G G+N + K + H E+
Sbjct: 22 AALGYKEGGVPIG--GCLINNKDGSVLGRGHN----------MRFQKGSA----TLHGEI 65
Query: 159 NAILNKNSADTKRCK---LYTSLFPCNECAKVIIQSGI 193
+ + N + K K LYT+L PC+ C II GI
Sbjct: 66 STLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGI 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,636,277
Number of Sequences: 539616
Number of extensions: 3006404
Number of successful extensions: 7066
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 6953
Number of HSP's gapped (non-prelim): 125
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)