Query psy6804
Match_columns 207
No_of_seqs 210 out of 2419
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 18:49:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02571 ComEB ComE operon pr 100.0 5.7E-33 1.2E-37 215.1 13.9 114 88-204 2-120 (151)
2 cd01286 deoxycytidylate_deamin 100.0 1.1E-30 2.5E-35 198.2 13.2 111 92-205 1-122 (131)
3 COG2131 ComEB Deoxycytidylate 100.0 1.8E-30 4E-35 200.5 12.2 117 88-205 4-131 (164)
4 KOG3127|consensus 100.0 1.4E-30 3.1E-35 207.6 11.5 121 83-203 58-184 (230)
5 PHA02588 cd deoxycytidylate de 100.0 7.1E-30 1.5E-34 201.1 13.7 110 92-204 3-134 (168)
6 PRK10860 tRNA-specific adenosi 100.0 5.3E-30 1.2E-34 202.4 12.5 100 90-204 11-115 (172)
7 COG0590 CumB Cytosine/adenosin 100.0 1.3E-29 2.7E-34 196.8 11.8 103 89-205 5-112 (152)
8 PF00383 dCMP_cyt_deam_1: Cyti 99.9 6.4E-28 1.4E-32 175.1 9.6 98 89-200 1-102 (102)
9 cd01285 nucleoside_deaminase N 99.9 1.4E-27 3E-32 175.9 11.0 95 96-204 1-100 (109)
10 cd01284 Riboflavin_deaminase-r 99.9 1.9E-27 4.1E-32 176.4 11.1 93 96-206 1-102 (115)
11 cd00786 cytidine_deaminase-lik 99.9 3.9E-25 8.4E-30 159.3 10.1 92 96-201 1-96 (96)
12 COG0117 RibD Pyrimidine deamin 99.9 1E-24 2.2E-29 164.6 11.8 97 89-205 3-108 (146)
13 PLN02807 diaminohydroxyphospho 99.9 1E-24 2.3E-29 191.5 12.1 96 89-204 29-133 (380)
14 PRK10786 ribD bifunctional dia 99.9 3E-24 6.4E-29 188.4 11.8 94 92-205 3-105 (367)
15 TIGR00326 eubact_ribD riboflav 99.9 2.5E-23 5.5E-28 181.4 11.1 89 96-204 1-98 (344)
16 KOG1018|consensus 99.9 3.6E-23 7.9E-28 162.4 10.1 103 88-204 7-118 (169)
17 cd01283 cytidine_deaminase Cyt 99.7 2.3E-16 5E-21 116.5 10.5 93 98-205 3-104 (112)
18 TIGR02571 ComEB ComE operon pr 99.7 5.5E-17 1.2E-21 125.7 5.7 66 1-70 72-139 (151)
19 PHA02588 cd deoxycytidylate de 99.7 1E-16 2.2E-21 126.4 5.5 66 1-69 86-153 (168)
20 COG2131 ComEB Deoxycytidylate 99.6 2.8E-16 6E-21 121.8 5.2 69 1-70 82-152 (164)
21 cd01284 Riboflavin_deaminase-r 99.5 5E-15 1.1E-19 109.9 4.7 62 1-63 48-115 (115)
22 PRK10860 tRNA-specific adenosi 99.5 6.8E-15 1.5E-19 116.4 5.8 63 1-64 65-131 (172)
23 COG0117 RibD Pyrimidine deamin 99.5 5.5E-15 1.2E-19 111.9 4.5 67 2-70 57-129 (146)
24 COG0590 CumB Cytosine/adenosin 99.5 8.1E-15 1.7E-19 113.9 4.8 59 2-61 62-124 (152)
25 cd01286 deoxycytidylate_deamin 99.4 1E-13 2.2E-18 105.2 4.9 48 1-48 73-122 (131)
26 KOG3127|consensus 99.4 1.5E-13 3.4E-18 110.2 4.0 74 1-74 139-212 (230)
27 PLN02807 diaminohydroxyphospho 99.4 2.5E-13 5.4E-18 119.7 5.2 66 1-68 82-153 (380)
28 cd01285 nucleoside_deaminase N 99.4 2.8E-13 6.1E-18 99.6 4.6 48 1-48 50-101 (109)
29 PRK10786 ribD bifunctional dia 99.4 3.5E-13 7.6E-18 118.6 5.0 66 1-68 53-124 (367)
30 TIGR00326 eubact_ribD riboflav 99.4 5.6E-13 1.2E-17 116.4 5.5 66 1-68 47-118 (344)
31 cd00786 cytidine_deaminase-lik 99.3 1.5E-12 3.2E-17 93.6 3.1 44 1-44 52-96 (96)
32 PF14439 Bd3614-deam: Bd3614-l 99.3 1.6E-11 3.6E-16 89.3 8.5 80 110-205 7-118 (136)
33 KOG2771|consensus 99.3 1.3E-11 2.9E-16 105.0 8.3 96 90-201 165-303 (344)
34 TIGR01354 cyt_deam_tetra cytid 99.2 1E-10 2.2E-15 88.3 10.6 83 95-192 3-94 (127)
35 PF00383 dCMP_cyt_deam_1: Cyti 99.2 4.5E-12 9.7E-17 91.6 1.5 42 2-43 58-102 (102)
36 KOG1018|consensus 99.0 4.3E-10 9.3E-15 88.6 4.4 41 8-48 79-119 (169)
37 PRK06848 hypothetical protein; 99.0 8.8E-09 1.9E-13 78.8 11.2 94 90-198 5-114 (139)
38 COG0295 Cdd Cytidine deaminase 98.9 1.2E-08 2.5E-13 77.1 10.3 95 94-203 7-111 (134)
39 PRK08298 cytidine deaminase; V 98.9 2.6E-08 5.6E-13 75.9 10.1 93 92-199 4-107 (136)
40 PRK05578 cytidine deaminase; V 98.8 4.9E-08 1.1E-12 74.0 10.9 84 94-192 5-97 (131)
41 PRK09027 cytidine deaminase; P 98.8 8.5E-08 1.8E-12 81.7 13.2 91 93-198 190-291 (295)
42 PRK12411 cytidine deaminase; P 98.8 9.2E-08 2E-12 72.6 10.9 84 94-192 5-97 (132)
43 TIGR01355 cyt_deam_dimer cytid 98.6 2.3E-07 5E-12 78.5 10.2 86 92-192 22-112 (283)
44 TIGR01355 cyt_deam_dimer cytid 98.6 8.5E-07 1.8E-11 75.1 11.8 87 93-194 175-274 (283)
45 PRK14719 bifunctional RNAse/5- 98.6 7.6E-08 1.7E-12 84.5 5.5 57 11-68 42-100 (360)
46 PLN02402 cytidine deaminase 98.5 1.2E-06 2.7E-11 74.6 10.3 85 92-192 25-115 (303)
47 KOG0833|consensus 98.4 4.5E-06 9.8E-11 65.2 11.4 93 91-199 20-123 (173)
48 PLN02182 cytidine deaminase 98.3 5.2E-06 1.1E-10 71.7 10.6 87 92-192 45-143 (339)
49 PRK09027 cytidine deaminase; P 98.2 8.1E-06 1.8E-10 69.7 9.7 86 92-192 50-140 (295)
50 cd01283 cytidine_deaminase Cyt 98.2 1.2E-06 2.5E-11 64.5 3.6 46 2-47 51-103 (112)
51 PLN02402 cytidine deaminase 98.2 2.4E-05 5.2E-10 66.8 11.0 57 93-164 193-251 (303)
52 PF14439 Bd3614-deam: Bd3614-l 98.0 9.9E-06 2.2E-10 59.3 4.2 50 11-64 74-130 (136)
53 KOG2771|consensus 97.8 1.5E-05 3.2E-10 68.5 2.7 33 13-45 272-304 (344)
54 PRK14719 bifunctional RNAse/5- 97.8 4.7E-05 1E-09 67.0 5.9 42 159-204 36-77 (360)
55 PF14437 MafB19-deam: MafB19-l 96.7 0.0099 2.1E-07 45.6 7.7 49 153-201 80-135 (146)
56 PF08210 APOBEC_N: APOBEC-like 95.6 0.01 2.2E-07 47.7 2.9 56 14-69 75-145 (188)
57 PF08211 dCMP_cyt_deam_2: Cyti 95.3 0.055 1.2E-06 40.5 5.8 56 94-164 35-92 (124)
58 PF14431 YwqJ-deaminase: YwqJ- 95.0 0.095 2.1E-06 39.3 6.4 41 153-193 66-125 (125)
59 PLN02182 cytidine deaminase 93.7 0.41 8.9E-06 41.8 8.2 36 93-129 202-239 (339)
60 PF14427 Pput2613-deam: Pput_2 89.7 2.5 5.5E-05 30.9 7.2 49 153-201 48-101 (118)
61 PF08210 APOBEC_N: APOBEC-like 86.0 0.64 1.4E-05 37.3 2.6 39 153-191 51-99 (188)
62 TIGR01354 cyt_deam_tetra cytid 82.0 1.8 4E-05 32.3 3.4 25 11-35 66-94 (127)
63 PRK00881 purH bifunctional pho 81.4 29 0.00063 32.2 11.5 81 94-198 399-482 (513)
64 PF14440 XOO_2897-deam: Xantho 78.9 0.88 1.9E-05 33.8 0.8 52 153-204 45-103 (118)
65 TIGR00355 purH phosphoribosyla 78.1 20 0.00043 33.3 9.3 79 96-198 399-480 (511)
66 PF14424 Toxin-deaminase: The 78.0 3.5 7.7E-05 31.2 3.8 40 153-192 73-119 (133)
67 PF14437 MafB19-deam: MafB19-l 75.8 4.5 9.7E-05 31.2 3.9 33 12-44 99-135 (146)
68 PLN02891 IMP cyclohydrolase 69.6 39 0.00084 31.6 9.0 78 96-198 436-516 (547)
69 PF14441 OTT_1508_deam: OTT_15 67.5 14 0.00031 27.9 5.0 40 153-192 67-107 (142)
70 PF14424 Toxin-deaminase: The 67.1 5.3 0.00012 30.2 2.6 22 14-35 98-119 (133)
71 COG0138 PurH AICAR transformyl 61.9 60 0.0013 30.0 8.5 81 94-198 401-484 (515)
72 PF14428 SCP1201-deam: SCP1.20 58.5 6 0.00013 30.0 1.5 49 153-201 68-123 (135)
73 COG3453 Uncharacterized protei 56.8 71 0.0015 23.9 6.8 79 15-105 8-88 (130)
74 PF05507 MAGP: Microfibril-ass 54.0 13 0.00029 27.9 2.6 32 12-43 88-119 (137)
75 PRK13907 rnhA ribonuclease H; 53.4 84 0.0018 22.8 7.1 56 110-183 16-75 (128)
76 PF04273 DUF442: Putative phos 53.1 85 0.0018 22.7 7.2 55 16-70 8-64 (110)
77 PF05528 Coronavirus_5: Corona 51.6 8 0.00017 26.0 1.0 22 13-34 25-50 (82)
78 PF08098 ATX_III: Anemonia sul 51.1 5.4 0.00012 21.2 0.1 9 20-28 2-10 (27)
79 PRK09710 lar restriction allev 50.6 3.4 7.3E-05 27.2 -0.9 16 18-33 3-18 (64)
80 KOG1682|consensus 49.9 22 0.00048 29.2 3.5 37 96-132 60-96 (287)
81 PF05507 MAGP: Microfibril-ass 49.0 18 0.00039 27.2 2.6 30 171-200 90-119 (137)
82 TIGR01617 arsC_related transcr 48.6 1E+02 0.0022 22.2 6.7 50 16-68 2-54 (117)
83 PF13540 RCC1_2: Regulator of 46.9 30 0.00065 18.7 2.8 19 113-132 10-28 (30)
84 COG3494 Uncharacterized protei 46.2 74 0.0016 27.0 6.1 70 57-128 117-186 (279)
85 smart00552 ADEAMc tRNA-specifi 42.9 44 0.00096 29.8 4.7 60 123-187 45-133 (374)
86 PF14440 XOO_2897-deam: Xantho 36.0 15 0.00033 27.2 0.6 34 14-48 66-104 (118)
87 PRK09732 hypothetical protein; 35.6 1.1E+02 0.0024 23.1 5.2 36 92-130 12-47 (134)
88 COG3193 GlcG Uncharacterized p 35.4 1.6E+02 0.0034 22.6 6.0 36 91-129 12-47 (141)
89 CHL00139 rpl18 ribosomal prote 32.4 46 0.001 24.3 2.6 38 28-65 71-108 (109)
90 PRK05593 rplR 50S ribosomal pr 31.6 47 0.001 24.5 2.6 39 27-65 78-116 (117)
91 TIGR02990 ectoine_eutA ectoine 31.3 39 0.00085 28.1 2.3 41 27-69 111-151 (239)
92 PF04805 Pox_E10: E10-like pro 30.4 32 0.00069 22.9 1.3 16 176-191 13-28 (70)
93 PF03259 Robl_LC7: Roadblock/L 29.6 58 0.0013 21.7 2.7 17 111-127 14-30 (91)
94 TIGR00060 L18_bact ribosomal p 29.5 57 0.0012 24.0 2.7 39 27-65 75-113 (114)
95 COG0256 RplR Ribosomal protein 27.7 70 0.0015 24.0 2.9 39 27-65 86-124 (125)
96 PF13953 PapC_C: PapC C-termin 27.2 36 0.00077 22.2 1.1 17 110-126 10-26 (68)
97 PF08973 TM1506: Domain of unk 27.0 62 0.0013 24.5 2.5 51 10-68 43-93 (134)
98 KOG2777|consensus 26.2 1.1E+02 0.0024 28.7 4.5 37 121-162 215-251 (542)
99 PRK13663 hypothetical protein; 25.6 1.4E+02 0.003 27.3 4.8 38 90-132 338-375 (493)
100 PF00861 Ribosomal_L18p: Ribos 25.6 86 0.0019 23.0 3.1 36 31-66 84-119 (119)
101 PRK07106 5-aminoimidazole-4-ca 25.5 5E+02 0.011 23.4 9.3 31 168-198 328-359 (390)
102 KOG1783|consensus 25.0 99 0.0021 20.9 2.9 36 90-126 34-71 (77)
103 PF13827 DUF4189: Domain of un 24.8 2.3E+02 0.005 19.6 5.2 48 113-179 2-49 (100)
104 PF14354 Lar_restr_allev: Rest 23.6 19 0.00041 22.8 -0.7 8 20-27 2-9 (61)
105 PF03162 Y_phosphatase2: Tyros 23.6 3.5E+02 0.0076 20.9 7.2 75 16-104 13-87 (164)
106 TIGR02608 delta_60_rpt delta-6 23.6 99 0.0021 19.6 2.6 18 115-132 5-22 (55)
107 PF00403 HMA: Heavy-metal-asso 23.0 1.3E+02 0.0028 18.6 3.2 28 16-43 1-33 (62)
108 cd04679 Nudix_Hydrolase_20 Mem 22.9 81 0.0018 22.5 2.5 21 110-130 2-22 (125)
109 PRK00075 cbiD cobalt-precorrin 22.5 2.2E+02 0.0047 25.4 5.5 22 109-130 336-357 (361)
110 KOG1228|consensus 22.2 50 0.0011 27.2 1.3 14 13-26 74-87 (256)
111 PF11090 DUF2833: Protein of u 21.9 87 0.0019 21.9 2.3 17 115-131 2-18 (86)
112 PF06230 DUF1009: Protein of u 21.6 3.4E+02 0.0074 22.3 6.1 70 56-129 59-130 (214)
113 smart00798 AICARFT_IMPCHas AIC 21.3 3.4E+02 0.0073 23.7 6.3 35 95-134 266-300 (311)
114 PF02457 DisA_N: DisA bacteria 21.0 68 0.0015 23.8 1.7 19 112-131 55-73 (122)
115 cd03036 ArsC_like Arsenate Red 21.0 3.2E+02 0.0069 19.4 5.4 50 16-68 2-54 (111)
116 PTZ00032 60S ribosomal protein 20.6 99 0.0021 25.2 2.7 19 29-47 174-192 (211)
117 PRK00611 putative disulfide ox 20.5 45 0.00097 25.3 0.7 11 176-186 31-41 (135)
118 TIGR00159 conserved hypothetic 20.5 89 0.0019 25.6 2.4 42 112-163 125-166 (211)
119 PRK00724 formate dehydrogenase 20.3 5.2E+02 0.011 21.6 10.0 64 111-198 158-227 (263)
No 1
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=100.00 E-value=5.7e-33 Score=215.05 Aligned_cols=114 Identities=39% Similarity=0.661 Sum_probs=95.2
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCC---CCCCCCCCCCCCCCCCCCChHHHHHHHcc
Q psy6804 88 VLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSDDEFPWDKNTHDELDMCHAEMNAILNK 164 (207)
Q Consensus 88 ~~~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~---~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~ 164 (207)
+++||++||++|+++|++|.+++.||||||| +||+||++|+|+.+++ |.+.+....+++.++ +.|||++||.++
T Consensus 2 ~~~~d~~fM~~A~~~A~rs~~~~~~VGAVIV-~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~--~~HAE~nAI~~a 78 (151)
T TIGR02571 2 RIKWDQYFMAQSHLLALRSTCTRLSVGATIV-RDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVR--TIHAEMNALLQC 78 (151)
T ss_pred CCcHHHHHHHHHHHHHHhcCCCCCCEEEEEE-ECCEEEEEEECCCCCCCCccccccccccccccCC--ccCHHHHHHHHH
Confidence 5689999999999999999999999999999 7999999999999876 323222212222345 899999999976
Q ss_pred --CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804 165 --NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 165 --~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
.+..+.|++||||+|||+||+++|+++||++|||+.++++
T Consensus 79 ~~~~~~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~ 120 (151)
T TIGR02571 79 AKFGVSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHN 120 (151)
T ss_pred HhcCCCcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCC
Confidence 2456889999999999999999999999999999976654
No 2
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.97 E-value=1.1e-30 Score=198.19 Aligned_cols=111 Identities=46% Similarity=0.655 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCC---------CCCCCCCChHHHHHHH
Q psy6804 92 HEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKN---------THDELDMCHAEMNAIL 162 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~---------~~~~~~~~HAE~~Ai~ 162 (207)
|++||++|+++|++|.++++|||||||+ +|+||++|+|++++++.+....+++. +.++ +.|||++||.
T Consensus 1 d~~~m~~A~~~A~~s~~~~~~VGAViv~-~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~HAE~~Ai~ 77 (131)
T cd01286 1 DEYFMAIARLAALRSTCPRRQVGAVIVK-DKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCR--TVHAEQNAIL 77 (131)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEEE-CCEEEEEeeCCCCCCCCCcccccccccccccccccccCC--CCCHHHHHHH
Confidence 4679999999999999999999999995 78999999999998755544444321 2344 8999999999
Q ss_pred ccC--CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 163 NKN--SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 163 ~~~--~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
++. +..+.|++||||+|||+||+++|+++||++|||+.+++.+
T Consensus 78 ~a~~~~~~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~~ 122 (131)
T cd01286 78 QAARHGVSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDD 122 (131)
T ss_pred HHhHcCCCcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCcc
Confidence 873 4577899999999999999999999999999999988763
No 3
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.8e-30 Score=200.46 Aligned_cols=117 Identities=48% Similarity=0.737 Sum_probs=98.6
Q ss_pred chh-HHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCC---CCCCCCCCCCCCC-----CCCCCChHHH
Q psy6804 88 VLE-WHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSDDEFPWDKNTH-----DELDMCHAEM 158 (207)
Q Consensus 88 ~~~-~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~---~~~~~~~~~~~~~-----~~~~~~HAE~ 158 (207)
+++ ||++||++|...|.+|.++++.|||+|| +||+||++|+|+.|.+ |.+.+....+... +...++|||+
T Consensus 4 R~~~wdeyfm~~A~l~a~Rstc~r~~VGAvIv-kd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~ 82 (164)
T COG2131 4 RPSMWDEYFMAIAELVALRSTCPRRQVGAVIV-KDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQ 82 (164)
T ss_pred cccHHHHHHHHHHHHHHHHccCcccceeEEEE-eCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHH
Confidence 345 9999999999999999999999999999 5999999999999988 3344333322111 1122899999
Q ss_pred HHHHcc--CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 159 NAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 159 ~Ai~~~--~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
|||.++ .+..+.|++||+|++||.+|++.|+++||++|||..++++.
T Consensus 83 NAil~aa~~g~~~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~ 131 (164)
T COG2131 83 NAILQAARHGVGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTE 131 (164)
T ss_pred HHHHHHHhcCCCCCCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcc
Confidence 999987 56777899999999999999999999999999999999865
No 4
>KOG3127|consensus
Probab=99.97 E-value=1.4e-30 Score=207.58 Aligned_cols=121 Identities=59% Similarity=0.995 Sum_probs=112.4
Q ss_pred CCCcCchhHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCC---CC---CCChH
Q psy6804 83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHD---EL---DMCHA 156 (207)
Q Consensus 83 ~~~~~~~~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~---~~---~~~HA 156 (207)
.++..+++||++||.+|...|+||++|+++||||||+++++||++|+|++|.||.+..+||.++... +. -++||
T Consensus 58 ~k~~~~lswd~yFM~iA~LsA~RSkDpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HA 137 (230)
T KOG3127|consen 58 LKRNGYLSWDDYFMAIAFLSAKRSKDPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHA 137 (230)
T ss_pred cccccCccHHHHHHHHHHHHHHhccCcccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeeh
Confidence 7888899999999999999999999999999999999999999999999999999999999876543 11 18999
Q ss_pred HHHHHHccCCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCC
Q psy6804 157 EMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQ 203 (207)
Q Consensus 157 E~~Ai~~~~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~ 203 (207)
|+|||..++...+.++++|+|+.||..|+..|+++||++|+|..++.
T Consensus 138 E~NAi~~~~~~~~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~~ 184 (230)
T KOG3127|consen 138 EENAILNKGRERVGGCSLYVTLCPCNECAKLIIQAGIKEVYYSSSYY 184 (230)
T ss_pred HHHHHHHhCccccCCceEEEeecchHHHHHHHHHhhhhheeeccccc
Confidence 99999999999999999999999999999999999999999998763
No 5
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.97 E-value=7.1e-30 Score=201.10 Aligned_cols=110 Identities=37% Similarity=0.634 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCC---CCCCCC---------CCCCCC--------CCCC
Q psy6804 92 HEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSDDEF---------PWDKNT--------HDEL 151 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~---~~~~~~---------~~~~~~--------~~~~ 151 (207)
|++||++|+++|++|.+++.||||||| ++|+||++|+|+.|.+ |.+... .+..+. .++
T Consensus 3 d~~fM~~A~~~A~~s~~~~~~VGAVIV-~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (168)
T PHA02588 3 DSTYLQIAYLVSQESKCVSWKVGAVIE-KNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKN- 80 (168)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEE-ECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCC-
Confidence 678999999999999999999999999 7999999999999876 333211 111110 123
Q ss_pred CCChHHHHHHHccC--CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804 152 DMCHAEMNAILNKN--SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 152 ~~~HAE~~Ai~~~~--~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
+.|||++||+++. +..+.|++||||+|||+||+++|+++||+||||+.+++.
T Consensus 81 -~~HAE~nAi~~a~~~~~~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~ 134 (168)
T PHA02588 81 -EIHAELNAILFAARNGISIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDR 134 (168)
T ss_pred -CccHHHHHHHHHhhcCCCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCC
Confidence 8999999999873 567899999999999999999999999999999987553
No 6
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=99.97 E-value=5.3e-30 Score=202.43 Aligned_cols=100 Identities=33% Similarity=0.528 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHhhCCCC-CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----
Q psy6804 90 EWHEYFMASAFLVAKRSKDP-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---- 164 (207)
Q Consensus 90 ~~~~~~m~~A~~~a~~s~~~-~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---- 164 (207)
.+|++||++|+++|+++.+. +.||||||| .+|+||++|+|+... ..|+ +.|||++||+++
T Consensus 11 ~~~~~~m~~A~~~A~~a~~~g~~pvGAVIV-~~g~IIa~g~N~~~~------------~~d~--~~HAEi~Ai~~a~~~~ 75 (172)
T PRK10860 11 FSHEYWMRHALTLAKRAWDEREVPVGAVLV-HNNRVIGEGWNRPIG------------RHDP--TAHAEIMALRQGGLVL 75 (172)
T ss_pred ccHHHHHHHHHHHHHHhhccCCCCEEEEEE-eCCEEEEEeeCCCCC------------CCCC--ccCHHHHHHHHHHHhc
Confidence 45889999999999999764 689999999 489999999999754 2356 899999999986
Q ss_pred CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804 165 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 165 ~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
+...+.|++||||+|||+||+++|+|+||+||||+.++++
T Consensus 76 ~~~~l~g~tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~ 115 (172)
T PRK10860 76 QNYRLLDATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAK 115 (172)
T ss_pred CCCCcCCcEEEeeCCCcHHHHHHHHHhCCCEEEEeecCCC
Confidence 3457789999999999999999999999999999988765
No 7
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.3e-29 Score=196.84 Aligned_cols=103 Identities=37% Similarity=0.515 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHHHHhhCCCC-CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---
Q psy6804 89 LEWHEYFMASAFLVAKRSKDP-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--- 164 (207)
Q Consensus 89 ~~~~~~~m~~A~~~a~~s~~~-~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--- 164 (207)
..+|+.||++|+.+|+++.+. +.|||||||+.+|+||+.|+|.... .+|| +.|||++||+.+
T Consensus 5 ~~~~~~~m~~al~~A~~a~~~ge~PvGaviV~~~~~ii~~~~N~~~~------------~~dp--taHAEi~air~a~~~ 70 (152)
T COG0590 5 SEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREE------------DNDP--TAHAEILAIRAAAET 70 (152)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCEEEEecCcccc------------CCCc--cccHHHHHHHHHHHh
Confidence 467899999999999998854 7999999997799999999998754 4577 999999999986
Q ss_pred -CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 165 -NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 165 -~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
+.+.+.++|||+|+|||+||++||+|+||+||||+.++++.
T Consensus 71 ~~~~~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~ 112 (152)
T COG0590 71 LGNYRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKT 112 (152)
T ss_pred hCCCCcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCc
Confidence 45789999999999999999999999999999999888763
No 8
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.95 E-value=6.4e-28 Score=175.14 Aligned_cols=98 Identities=49% Similarity=0.781 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHHhhC-CCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC--
Q psy6804 89 LEWHEYFMASAFLVAKRS-KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN-- 165 (207)
Q Consensus 89 ~~~~~~~m~~A~~~a~~s-~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~-- 165 (207)
++||+.||++|+++|++| ..++.+|||+||+++|++|+.|+|....+ .++ ..|||++||.++.
T Consensus 1 m~~~~~~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~g~n~~~~~------------~~~--~~HAE~~Ai~~~~~~ 66 (102)
T PF00383_consen 1 MEWDEEFMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIATGYNGEPPG------------KNP--TIHAEMNAIRKAARN 66 (102)
T ss_dssp -CHHHHHHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEEEESBHHST------------TGG--TB-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCEEEEEEeccCccEEEEeeeeeee------------ccc--cccchhhhhhhhhhh
Confidence 368999999999999999 66799999999988999999999998643 224 8999999999862
Q ss_pred -CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEe
Q psy6804 166 -SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 200 (207)
Q Consensus 166 -~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~ 200 (207)
...+.|++||+|+|||.||+++|+++||+||||++
T Consensus 67 ~~~~~~~~~lyvt~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 67 GGSSLKGCTLYVTLEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp TSSGETTEEEEEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred ccccccCcccccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence 33568999999999999999999999999999985
No 9
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.95 E-value=1.4e-27 Score=175.90 Aligned_cols=95 Identities=35% Similarity=0.516 Sum_probs=83.7
Q ss_pred HHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----CCCCCC
Q psy6804 96 MASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----NSADTK 170 (207)
Q Consensus 96 m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----~~~~~~ 170 (207)
|++|+++|+++.. ++.||||+||+++|+||+.|+|+..+. .|+ +.|||++||.++ +...+.
T Consensus 1 m~~al~~a~~~~~~~~~~vgaviv~~~~~ii~~g~n~~~~~------------~~~--~~HAE~~ai~~~~~~~~~~~~~ 66 (109)
T cd01285 1 MRLAIELARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQD------------GDP--TAHAEIVAIRNAARRLGSYLLS 66 (109)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEEEeCCCEEEEEEeCCCCCC------------CCC--cccHHHHHHHHHHHHhCCCccC
Confidence 6789999998865 489999999988899999999998642 345 899999999987 334689
Q ss_pred CcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804 171 RCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 171 ~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
|++||+|+|||+||+++|+|+||++|||+.++++
T Consensus 67 ~~~ly~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~ 100 (109)
T cd01285 67 GCTLYTTLEPCPMCAGALLWARIKRVVYGASDPK 100 (109)
T ss_pred CeEEEEeCCChHHHHHHHHHHCCCEEEEEecCCc
Confidence 9999999999999999999999999999998875
No 10
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.95 E-value=1.9e-27 Score=176.42 Aligned_cols=93 Identities=34% Similarity=0.555 Sum_probs=83.7
Q ss_pred HHHHHHHHhhC--C-CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCCCCCc
Q psy6804 96 MASAFLVAKRS--K-DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRC 172 (207)
Q Consensus 96 m~~A~~~a~~s--~-~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~~~~~ 172 (207)
|++|+++|+++ . .++.|||||||+.||+||+.|+|+..+ +.|||++||+++....++|+
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~~~------------------~~HAE~~ai~~a~~~~l~g~ 62 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKAG------------------GPHAEVNALASAGEKLARGA 62 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCCCC------------------cccHHHHHHHHHhhcCCCCe
Confidence 68899999998 4 468999999998789999999999752 89999999999855588999
Q ss_pred EEEEcccCh------HHHHHHHHHhCCCEEEEEecCCCCC
Q psy6804 173 KLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQMSY 206 (207)
Q Consensus 173 ~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~~~ 206 (207)
+||+|+||| +||+++|+|+||+||||+.++++.+
T Consensus 63 tly~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~ 102 (115)
T cd01284 63 TLYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPL 102 (115)
T ss_pred EEEEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCcc
Confidence 999999999 8999999999999999999888743
No 11
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.92 E-value=3.9e-25 Score=159.31 Aligned_cols=92 Identities=39% Similarity=0.553 Sum_probs=78.6
Q ss_pred HHHHHHHHhhC--CCCCCceEEEEEcC-CCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC-CCCCCC
Q psy6804 96 MASAFLVAKRS--KDPVTRVGAVIVNE-DNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN-SADTKR 171 (207)
Q Consensus 96 m~~A~~~a~~s--~~~~~~vGaviv~~-~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~-~~~~~~ 171 (207)
|++|+++|+++ ..++.||||+||+. +|++++.|+|..... .++ +.|||++||+++. ...+++
T Consensus 1 m~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~------------~~~--~~HAE~~ai~~a~~~~~~~~ 66 (96)
T cd00786 1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAA------------YSM--CNHAERTALFNAGSEGDTKG 66 (96)
T ss_pred CHHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccCCC------------CCC--eeCHHHHHHHHHHHcCCCCc
Confidence 67899999987 34689999999975 699999999987542 345 8999999999872 223799
Q ss_pred cEEEEcccChHHHHHHHHHhCCCEEEEEec
Q psy6804 172 CKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201 (207)
Q Consensus 172 ~~ly~T~ePC~~C~~ai~~agi~~vvy~~~ 201 (207)
++||+|+|||.||+++|+|+||++|||+.+
T Consensus 67 ~tly~tlePC~mC~~ai~~~gi~~Vv~~~~ 96 (96)
T cd00786 67 QMLYVALSPCGACAQLIIELGIKDVIVVLT 96 (96)
T ss_pred eEEEEECCChHHHHHHHHHhCCCCEEEeeC
Confidence 999999999999999999999999999863
No 12
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=99.92 E-value=1e-24 Score=164.63 Aligned_cols=97 Identities=31% Similarity=0.518 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC
Q psy6804 89 LEWHEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN 165 (207)
Q Consensus 89 ~~~~~~~m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~ 165 (207)
...|++||++|+++|++.. .|+++|||||| ++|+||+.|+..... ..|||+.||..+
T Consensus 3 ~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV-~~~~Ivg~G~h~~aG------------------~pHAEv~Al~~a- 62 (146)
T COG0117 3 SELDERYMERALELAEKGQGTTSPNPSVGCVIV-KDGEIVGEGYHEKAG------------------GPHAEVCALRMA- 62 (146)
T ss_pred chHHHHHHHHHHHHHHhcCCcCCCCCceeEEEE-ECCEEEeeeecCCCC------------------CCcHHHHHHHHc-
Confidence 4569999999999999954 46899999999 688999999998754 689999999998
Q ss_pred CCCCCCcEEEEcccChHH------HHHHHHHhCCCEEEEEecCCCC
Q psy6804 166 SADTKRCKLYTSLFPCNE------CAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 166 ~~~~~~~~ly~T~ePC~~------C~~ai~~agi~~vvy~~~~~~~ 205 (207)
+...+|+|+|||+|||.. |+.+|+.+||+|||++..++|-
T Consensus 63 g~~a~Gat~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp 108 (146)
T COG0117 63 GEAARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNP 108 (146)
T ss_pred CcccCCCEEEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCc
Confidence 889999999999999987 9999999999999999999884
No 13
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=99.92 E-value=1e-24 Score=191.46 Aligned_cols=96 Identities=27% Similarity=0.450 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC
Q psy6804 89 LEWHEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN 165 (207)
Q Consensus 89 ~~~~~~~m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~ 165 (207)
++||++||++|+++|+++. +++++|||||| ++|+||+.|+|.... ..|||++||.++
T Consensus 29 ~~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV-~~g~Ii~~g~n~~~g------------------~~HAEi~Ai~~a- 88 (380)
T PLN02807 29 GDDDSFYMRRCVELARKAIGCTSPNPMVGCVIV-KDGRIVGEGFHPKAG------------------QPHAEVFALRDA- 88 (380)
T ss_pred CchHHHHHHHHHHHHHhhcccCCCCCCEEEEEE-ECCEEEEEEeCCCCC------------------CcCHHHHHHHHh-
Confidence 4789999999999999984 35678999999 689999999998643 589999999998
Q ss_pred CCCCCCcEEEEcccCh------HHHHHHHHHhCCCEEEEEecCCC
Q psy6804 166 SADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 166 ~~~~~~~~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
+..+.|+|||||+||| +||+++|+++||+||||+..+++
T Consensus 89 ~~~~~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~ 133 (380)
T PLN02807 89 GDLAENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPN 133 (380)
T ss_pred hhhcCCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCC
Confidence 4467899999999999 89999999999999999998776
No 14
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.91 E-value=3e-24 Score=188.44 Aligned_cols=94 Identities=33% Similarity=0.591 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCC
Q psy6804 92 HEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSAD 168 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~ 168 (207)
|++||++|+++|+++. +++.||||||| ++|+||++|+|.... ..|||++||++++ ..
T Consensus 3 d~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~g------------------~~HAE~~ai~~a~-~~ 62 (367)
T PRK10786 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIV-KDGEIVGEGYHQRAG------------------EPHAEVHALRMAG-EK 62 (367)
T ss_pred HHHHHHHHHHHHHhcCcCCCCCCCEEEEEE-eCCEEEEEEeCCCCC------------------CCCHHHHHHHHHh-hh
Confidence 6789999999999984 46899999999 689999999998642 5899999999984 46
Q ss_pred CCCcEEEEcccCh------HHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 169 TKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 169 ~~~~~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
++|+|||||+||| +||+.+|+++||+||||+.++++.
T Consensus 63 ~~g~tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~ 105 (367)
T PRK10786 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNP 105 (367)
T ss_pred cCCCEEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCc
Confidence 7899999999999 899999999999999999888763
No 15
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.89 E-value=2.5e-23 Score=181.37 Aligned_cols=89 Identities=35% Similarity=0.550 Sum_probs=79.9
Q ss_pred HHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCCCCCc
Q psy6804 96 MASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRC 172 (207)
Q Consensus 96 m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~~~~~ 172 (207)
|++|+++|+++. +++.|||||||+ ||+||++|+|+... +.|||++||+++ ...++|+
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~-~~~ii~~g~n~~~~------------------~~HAE~~ai~~a-~~~~~g~ 60 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVK-NGEIVGEGAHQKAG------------------EPHAEVHALRQA-GENAKGA 60 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEe-CCEEEEEeeCCCCC------------------CCCHHHHHHHHh-ccccCCc
Confidence 789999999985 357899999995 99999999998643 799999999998 4467999
Q ss_pred EEEEcccCh------HHHHHHHHHhCCCEEEEEecCCC
Q psy6804 173 KLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 173 ~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
|||||+||| +||+++|+++||+||||+..+++
T Consensus 61 tlyvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~ 98 (344)
T TIGR00326 61 TAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPN 98 (344)
T ss_pred EEEEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCC
Confidence 999999999 79999999999999999987765
No 16
>KOG1018|consensus
Probab=99.89 E-value=3.6e-23 Score=162.38 Aligned_cols=103 Identities=32% Similarity=0.457 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHHHHHhhCCC-C-CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHc--
Q psy6804 88 VLEWHEYFMASAFLVAKRSKD-P-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILN-- 163 (207)
Q Consensus 88 ~~~~~~~~m~~A~~~a~~s~~-~-~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~-- 163 (207)
..++|..||..|+++|.++.+ + +.|||||+|+.||+|+++|+|.+.. .+|+ +.|||+.||..
T Consensus 7 ~~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~------------~~d~--t~HaE~~~I~~~~ 72 (169)
T KOG1018|consen 7 LSDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNE------------KKDP--TAHAEVIAIREEE 72 (169)
T ss_pred cccccHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecc------------cCCc--chhhHHHHHhhHH
Confidence 457899999999999999976 5 7999999996699999999999743 4566 99999999997
Q ss_pred --c---CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804 164 --K---NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 164 --~---~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
. ....+++++||||.|||+||++||.|+||++|||+...++
T Consensus 73 ~~~~~~~~~~ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~ 118 (169)
T KOG1018|consen 73 VMCKSLRTIDLSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNER 118 (169)
T ss_pred HHhhhcCceeccCCEEEEEecccHHHHHHHHHcCCCEEEEeccccc
Confidence 1 4477899999999999999999999999999999976543
No 17
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.69 E-value=2.3e-16 Score=116.48 Aligned_cols=93 Identities=22% Similarity=0.221 Sum_probs=75.6
Q ss_pred HHHHHHhhCCC--CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CCCCCCCcE
Q psy6804 98 SAFLVAKRSKD--PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NSADTKRCK 173 (207)
Q Consensus 98 ~A~~~a~~s~~--~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~~~~~~~~ 173 (207)
.|++.++++.. .+.||||+|++++|+|+ +|+|..... .++ +.|||+.||.++ .+......+
T Consensus 3 ~a~~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e~~~------------~~~--~~hAE~~ai~~~~~~~~~~~~~~ 67 (112)
T cd01283 3 AALAAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVENAS------------YGL--TLCAERTAIGKAVSEGLRRYLVT 67 (112)
T ss_pred HHHHHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEeecCC------------CCC--CcCHHHHHHHHHHHcCCCceEEE
Confidence 46666666643 48999999998889998 899976542 234 899999999986 223356899
Q ss_pred EEEc-----ccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 174 LYTS-----LFPCNECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 174 ly~T-----~ePC~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
+|+| .+||.||+++|.+.++++|+|..+.+++
T Consensus 68 i~vs~~~~~~sPC~~C~~~l~~~~~~~v~~~~~~~~~ 104 (112)
T cd01283 68 WAVSDEGGVWSPCGACRQVLAEFLPSRLYIIIDNPKG 104 (112)
T ss_pred EEEECCCCccCCCHHHHHHHHHhCCCCeEEEEEcCCC
Confidence 9999 9999999999999999999999877764
No 18
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.67 E-value=5.5e-17 Score=125.74 Aligned_cols=66 Identities=35% Similarity=0.594 Sum_probs=56.9
Q ss_pred Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804 1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM 70 (207)
Q Consensus 1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~ 70 (207)
+|||+++ .+..+.|+|||||+|||+||+++|+++||++|||+.++++.. .+.++|+++||++....
T Consensus 72 ~nAI~~a~~~~~~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~----~~~~~l~~~gi~v~~~~ 139 (151)
T TIGR02571 72 MNALLQCAKFGVSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHP----YAIELFEQAGVELKKVP 139 (151)
T ss_pred HHHHHHHHhcCCCcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcH----HHHHHHHHCCCEEEEeC
Confidence 4888874 345789999999999999999999999999999998775542 47899999999999863
No 19
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.66 E-value=1e-16 Score=126.41 Aligned_cols=66 Identities=27% Similarity=0.473 Sum_probs=56.4
Q ss_pred Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeee
Q psy6804 1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSE 69 (207)
Q Consensus 1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~ 69 (207)
+|||+++ .+.++.|+|||||+|||+||+++|+++||++|||+.+++... ..+.++|+++||++...
T Consensus 86 ~nAi~~a~~~~~~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~---~~~~~~L~~~Gi~v~~~ 153 (168)
T PHA02588 86 LNAILFAARNGISIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNG---PGWDDILRKSGIEVIQI 153 (168)
T ss_pred HHHHHHHhhcCCCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCc---HHHHHHHHHCCCEEEEe
Confidence 4889886 356789999999999999999999999999999998755432 23789999999999875
No 20
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.63 E-value=2.8e-16 Score=121.76 Aligned_cols=69 Identities=36% Similarity=0.555 Sum_probs=61.3
Q ss_pred Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804 1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM 70 (207)
Q Consensus 1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~ 70 (207)
+|||+++ .+..++|+|||||++||.+|+++|+++||++|||..+|+++... ..+..+|+++||.+.++.
T Consensus 82 ~NAil~aa~~g~~~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~~~-~~s~~l~~~agv~~~~~~ 152 (164)
T COG2131 82 QNAILQAARHGVGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTETVA-PYSQELLEEAGVKVRQFP 152 (164)
T ss_pred HHHHHHHHhcCCCCCCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcchhh-HHHHHHHHhCCceEEecc
Confidence 6999994 67788999999999999999999999999999999999987522 247899999999999975
No 21
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.55 E-value=5e-15 Score=109.88 Aligned_cols=62 Identities=27% Similarity=0.422 Sum_probs=52.2
Q ss_pred ChhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccce
Q psy6804 1 MNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAK 63 (207)
Q Consensus 1 ~nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~g 63 (207)
++||.++...++.|+|||+|+||| +||+++|+|+||++|||+..+++...... +.++|+++|
T Consensus 48 ~~ai~~a~~~~l~g~tly~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~~~~~-g~~~l~~~g 115 (115)
T cd01284 48 VNALASAGEKLARGATLYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGK-GAERLRAAG 115 (115)
T ss_pred HHHHHHHhhcCCCCeEEEEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCcccccH-HHHHHHHCc
Confidence 367888654489999999999999 89999999999999999999987655444 778888765
No 22
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=99.54 E-value=6.8e-15 Score=116.38 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=50.9
Q ss_pred Chhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhcccee
Q psy6804 1 MNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKV 64 (207)
Q Consensus 1 ~nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI 64 (207)
++||+++ ...++.|+|||||+|||+||+++|+++||++|||+..+++....+. +..+|+..++
T Consensus 65 i~Ai~~a~~~~~~~~l~g~tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~~g~-~~~~l~~~~~ 131 (172)
T PRK10860 65 IMALRQGGLVLQNYRLLDATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGS-LMDVLHHPGM 131 (172)
T ss_pred HHHHHHHHHhcCCCCcCCcEEEeeCCCcHHHHHHHHHhCCCEEEEeecCCCCCCCCc-HHHHhhcccC
Confidence 4677764 3456789999999999999999999999999999999887654433 4667777765
No 23
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=99.54 E-value=5.5e-15 Score=111.89 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=60.8
Q ss_pred hhccccCCCCCCCcEEEEcCCCcHH------HHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804 2 NAILNKNSADTKRCKLYTSLFPCNE------CAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM 70 (207)
Q Consensus 2 nAi~~~~~~~~~g~~lYvT~~PC~~------Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~ 70 (207)
+||.++ +...+|+|+|||+|||++ |+.+|+.+||++||++..||++..++. |..+|+++||++..-.
T Consensus 57 ~Al~~a-g~~a~Gat~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~-G~~~L~~aGi~V~~gi 129 (146)
T COG0117 57 CALRMA-GEAARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGG-GLARLRAAGIEVEVGI 129 (146)
T ss_pred HHHHHc-CcccCCCEEEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccCc-hHHHHHHcCCeEEEeh
Confidence 677777 678999999999999966 999999999999999999999888887 8999999999998753
No 24
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=8.1e-15 Score=113.88 Aligned_cols=59 Identities=29% Similarity=0.427 Sum_probs=48.0
Q ss_pred hhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhcc
Q psy6804 2 NAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDA 61 (207)
Q Consensus 2 nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~ 61 (207)
+||+++ +...+.|||||||+|||+||+++|+++||++|||+.++++....+. ...++.+
T Consensus 62 ~air~a~~~~~~~~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~-~~~i~~~ 124 (152)
T COG0590 62 LAIRAAAETLGNYRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGS-LLDILKD 124 (152)
T ss_pred HHHHHHHHhhCCCCcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCc-ccccccC
Confidence 566663 3457999999999999999999999999999999999887764433 4556666
No 25
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.44 E-value=1e-13 Score=105.23 Aligned_cols=48 Identities=46% Similarity=0.796 Sum_probs=42.2
Q ss_pred Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCC
Q psy6804 1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQ 48 (207)
Q Consensus 1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~ 48 (207)
+|||+++ .+..+.|+|||||+|||+||+++|+++||++|||+.+++..
T Consensus 73 ~~Ai~~a~~~~~~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~~ 122 (131)
T cd01286 73 QNAILQAARHGVSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDD 122 (131)
T ss_pred HHHHHHHhHcCCCcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCcc
Confidence 4788874 24678999999999999999999999999999999987654
No 26
>KOG3127|consensus
Probab=99.41 E-value=1.5e-13 Score=110.21 Aligned_cols=74 Identities=49% Similarity=0.657 Sum_probs=66.7
Q ss_pred ChhccccCCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeeccccc
Q psy6804 1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMN 74 (207)
Q Consensus 1 ~nAi~~~~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~ 74 (207)
+|||+++.+..+.++++|||+.||..|+++|+++||++|||...+.-+.....++.++|+.+|+++.+++++..
T Consensus 139 ~NAi~~~~~~~~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~~~~k~~~~~s~~~l~~agv~~~q~i~~~~ 212 (230)
T KOG3127|consen 139 ENAILNKGRERVGGCSLYVTLCPCNECAKLIIQAGIKEVYYSSSYYVDKYADRASKRMLDLAGVTLRQFIPPES 212 (230)
T ss_pred HHHHHHhCccccCCceEEEeecchHHHHHHHHHhhhhheeeccccccchHHHHHHHHHHHhcCcceEEeccCCc
Confidence 59999998999999999999999999999999999999999999875656667899999999999999876543
No 27
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=99.40 E-value=2.5e-13 Score=119.71 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=57.6
Q ss_pred ChhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804 1 MNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS 68 (207)
Q Consensus 1 ~nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~ 68 (207)
++||.++. ..+.|+|||||+||| +||+++|+++||++|||+..++++...+. +.++|+++||++..
T Consensus 82 i~Ai~~a~-~~~~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~-g~~~l~~~gi~V~~ 153 (380)
T PLN02807 82 VFALRDAG-DLAENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASK-GIERLRDAGIEVTV 153 (380)
T ss_pred HHHHHHhh-hhcCCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccch-HHHHHHhCCCEEEe
Confidence 47888874 467899999999999 89999999999999999999888766554 78899999999865
No 28
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.40 E-value=2.8e-13 Score=99.59 Aligned_cols=48 Identities=38% Similarity=0.571 Sum_probs=40.9
Q ss_pred Chhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCC
Q psy6804 1 MNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQ 48 (207)
Q Consensus 1 ~nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~ 48 (207)
++||.++ ....+.|++||+|+|||+||+++|+++||++|||+.++++.
T Consensus 50 ~~ai~~~~~~~~~~~~~~~~ly~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~~ 101 (109)
T cd01285 50 IVAIRNAARRLGSYLLSGCTLYTTLEPCPMCAGALLWARIKRVVYGASDPKL 101 (109)
T ss_pred HHHHHHHHHHhCCCccCCeEEEEeCCChHHHHHHHHHHCCCEEEEEecCCcc
Confidence 3667764 22368999999999999999999999999999999988764
No 29
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.38 E-value=3.5e-13 Score=118.57 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=57.0
Q ss_pred ChhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804 1 MNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS 68 (207)
Q Consensus 1 ~nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~ 68 (207)
+|||.++. ..++|+|||||+||| +||+++|+++||++|||+..+++....+. +..+|+++||++..
T Consensus 53 ~~ai~~a~-~~~~g~tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~-~~~~l~~~gi~v~~ 124 (367)
T PRK10786 53 VHALRMAG-EKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGR-GLYRLQQAGIDVSH 124 (367)
T ss_pred HHHHHHHh-hhcCCCEEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCch-HHHHHhcCCcEEEc
Confidence 47888874 367999999999999 89999999999999999999988765543 67889999999875
No 30
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.37 E-value=5.6e-13 Score=116.42 Aligned_cols=66 Identities=24% Similarity=0.387 Sum_probs=56.7
Q ss_pred ChhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804 1 MNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS 68 (207)
Q Consensus 1 ~nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~ 68 (207)
++||+++. ..++|+|||||+||| +||+++|+++||++|||+..+++....+. +..+|++.||++..
T Consensus 47 ~~ai~~a~-~~~~g~tlyvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~-~~~~l~~~gi~v~~ 118 (344)
T TIGR00326 47 VHALRQAG-ENAKGATAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGR-GAERLKQAGIEVTF 118 (344)
T ss_pred HHHHHHhc-cccCCcEEEEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCCccccch-HHHHHhcCCcEEEe
Confidence 47888874 367999999999999 79999999999999999999887765543 67889999998865
No 31
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.30 E-value=1.5e-12 Score=93.63 Aligned_cols=44 Identities=43% Similarity=0.738 Sum_probs=37.0
Q ss_pred ChhccccC-CCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEecc
Q psy6804 1 MNAILNKN-SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 44 (207)
Q Consensus 1 ~nAi~~~~-~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~ 44 (207)
++||.++. ...+++++||+|+|||.||+++|+++||++|||+.+
T Consensus 52 ~~ai~~a~~~~~~~~~tly~tlePC~mC~~ai~~~gi~~Vv~~~~ 96 (96)
T cd00786 52 RTALFNAGSEGDTKGQMLYVALSPCGACAQLIIELGIKDVIVVLT 96 (96)
T ss_pred HHHHHHHHHcCCCCceEEEEECCChHHHHHHHHHhCCCCEEEeeC
Confidence 36777742 224799999999999999999999999999999863
No 32
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=99.29 E-value=1.6e-11 Score=89.28 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=66.5
Q ss_pred CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc-------------------------
Q psy6804 110 VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK------------------------- 164 (207)
Q Consensus 110 ~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~------------------------- 164 (207)
.+.|-|.||+++|.++..+.|.-. +|. ++|||+|.+...
T Consensus 7 DR~VvA~lv~~~G~l~daa~NtNa--------------~N~--~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~ 70 (136)
T PF14439_consen 7 DRRVVAALVSPDGELVDAAVNTNA--------------DNK--MLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEE 70 (136)
T ss_pred ccceeEEEECCCCcEEEeeeccCC--------------ccc--eeehhhhhhhHHHHhhcccCCCcccccccCCCcchhh
Confidence 577899999999999999999743 244 899999998742
Q ss_pred CCCCCCCcEEEEcccChHHHHHHHHHhCC-------CEEEEEecCCCC
Q psy6804 165 NSADTKRCKLYTSLFPCNECAKVIIQSGI-------KEVIYMCDKQMS 205 (207)
Q Consensus 165 ~~~~~~~~~ly~T~ePC~~C~~ai~~agi-------~~vvy~~~~~~~ 205 (207)
.+....|++||+|+.||.||+..+..++. .+|||+..++.+
T Consensus 71 ~~~l~~ga~l~vTlqcCkMCAalv~a~~d~pg~~~~~~vvY~~ed~G~ 118 (136)
T PF14439_consen 71 RRPLPPGARLLVTLQCCKMCAALVCAASDRPGRRVPIDVVYLNEDPGS 118 (136)
T ss_pred cCcCCCCcEEEEechhHHHHHHHHHHHhhCcCCccceEEEEecCCCCc
Confidence 23444699999999999999999999887 899999887754
No 33
>KOG2771|consensus
Probab=99.27 E-value=1.3e-11 Score=105.02 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCC-eEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----
Q psy6804 90 EWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDN-KIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---- 164 (207)
Q Consensus 90 ~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g-~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---- 164 (207)
..+.++|+.++.+|..+... +++|++|+++-+ .|++.|....-. .+| ..|+-|+++...
T Consensus 165 ~~~~ri~e~~I~~a~~~~~~-~~~~a~I~~p~~~~Via~~~~~~~~-------------~~P--~eh~~mv~v~~v~rrq 228 (344)
T KOG2771|consen 165 GEIARIGELLIAMATDGHAS-RPVSAAIVDPVMDRVIAAGTGEVCA-------------YNP--IEHCVMVLVHFVARRQ 228 (344)
T ss_pred HHHHHHHHHHHHHHhhhccc-cCccceecCCccceEEecCCCcccc-------------cCc--HHHHHHHHHHHHHHHH
Confidence 34568899999999988765 999999999865 455555554321 145 678887777521
Q ss_pred -C-------------------------------------CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEec
Q psy6804 165 -N-------------------------------------SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201 (207)
Q Consensus 165 -~-------------------------------------~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~ 201 (207)
. ++.+.|+++|+|+|||.||++|+++++|+||+|+..
T Consensus 229 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~ 303 (344)
T KOG2771|consen 229 EEGTWDLHPIPLLIFNAVSSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKP 303 (344)
T ss_pred hccccccccccccccccccchhhhhhchhccccccccccceeeecceEEEecChHHHHHHHHHHHhhhheeeccC
Confidence 1 256689999999999999999999999999999876
No 34
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=99.24 E-value=1e-10 Score=88.33 Aligned_cols=83 Identities=22% Similarity=0.280 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCCCC
Q psy6804 95 FMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSADT 169 (207)
Q Consensus 95 ~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~~~ 169 (207)
+.+.|.++++++..| +.||||+|++.||+|+. |.|.... ..++ +.|||+.||.++ +...+
T Consensus 3 l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e~~------------~~~~--s~~AE~~Ai~~a~~~g~~~i 67 (127)
T TIGR01354 3 LFKAAQEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVENA------------SYPL--TICAERSAIGKAISAGYRKF 67 (127)
T ss_pred HHHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeeccc------------CCCC--CcCHHHHHHHHHHHcCCCCe
Confidence 568899999999987 68999999999999986 9997643 2344 899999999986 33345
Q ss_pred CCcEEEE----cccChHHHHHHHHHhC
Q psy6804 170 KRCKLYT----SLFPCNECAKVIIQSG 192 (207)
Q Consensus 170 ~~~~ly~----T~ePC~~C~~ai~~ag 192 (207)
....++. ...||.+|...|.+.+
T Consensus 68 ~~i~vv~~~~~~~sPCG~Crq~l~e~~ 94 (127)
T TIGR01354 68 VAIAVADSADDPVSPCGACRQVLAEFA 94 (127)
T ss_pred EEEEEEeCCCCCcCccHHHHHHHHHhC
Confidence 5555554 5689999999999987
No 35
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.20 E-value=4.5e-12 Score=91.61 Aligned_cols=42 Identities=45% Similarity=0.826 Sum_probs=33.8
Q ss_pred hhcccc--C-CCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEec
Q psy6804 2 NAILNK--N-SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 43 (207)
Q Consensus 2 nAi~~~--~-~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~ 43 (207)
|||.++ . +.++.|++||+|+|||.||+.+|+++||++|||+.
T Consensus 58 ~Ai~~~~~~~~~~~~~~~lyvt~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 58 NAIRKAARNGGSSLKGCTLYVTLEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp HHHHHHHHTTSSGETTEEEEEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred hhhhhhhhhccccccCcccccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence 566663 2 34578999999999999999999999999999973
No 36
>KOG1018|consensus
Probab=98.99 E-value=4.3e-10 Score=88.55 Aligned_cols=41 Identities=29% Similarity=0.587 Sum_probs=37.0
Q ss_pred CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCC
Q psy6804 8 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQ 48 (207)
Q Consensus 8 ~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~ 48 (207)
...+++++|+|||+|||+||+++|.+.||++|||+...+..
T Consensus 79 ~~~~ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~ 119 (169)
T KOG1018|consen 79 RTIDLSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERF 119 (169)
T ss_pred CceeccCCEEEEEecccHHHHHHHHHcCCCEEEEecccccc
Confidence 34688999999999999999999999999999999986544
No 37
>PRK06848 hypothetical protein; Validated
Probab=98.98 E-value=8.8e-09 Score=78.80 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHhhCCCC-CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---C
Q psy6804 90 EWHEYFMASAFLVAKRSKDP-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---N 165 (207)
Q Consensus 90 ~~~~~~m~~A~~~a~~s~~~-~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~ 165 (207)
+.++.+++.|.++.+.+..+ +++|||+|..++|+|+ +|.|-..... .. ++|||..||..+ +
T Consensus 5 ~~~~~L~~~A~~a~~~ay~ps~f~VgAa~l~~~G~i~-~G~NvEnas~------------~~--tiCAEr~Ai~~av~~g 69 (139)
T PRK06848 5 SEDYELIKAAEKVIEKRYRNDWHHVGAALRTKTGRIY-AAVHLEAYVG------------RI--TVCAEAIAIGKAISEG 69 (139)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEeCCCCEE-EEEEeecCCC------------Cc--ccCHHHHHHHHHHHcC
Confidence 34556899999999998876 7899999999999987 9999654211 12 799999999886 2
Q ss_pred CCCCCCcEEEE------------cccChHHHHHHHHHhCCCEEEE
Q psy6804 166 SADTKRCKLYT------------SLFPCNECAKVIIQSGIKEVIY 198 (207)
Q Consensus 166 ~~~~~~~~ly~------------T~ePC~~C~~ai~~agi~~vvy 198 (207)
...+....+.. ...||.+|.+.|.+.+-.-.|+
T Consensus 70 ~~~i~~i~~v~~~~~~~~~~~~~~~~PCG~CRQvl~E~~~~~~v~ 114 (139)
T PRK06848 70 DHEIDTIVAVRHPKPHEDDREIWVVSPCGACRELISDYGKNTNVI 114 (139)
T ss_pred CCceEEEEEEecCcccccccCCCccCCChhhHHHHHHhCCCCEEE
Confidence 22232222222 2469999999999986443333
No 38
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=98.94 E-value=1.2e-08 Score=77.13 Aligned_cols=95 Identities=23% Similarity=0.286 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCCC
Q psy6804 94 YFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSAD 168 (207)
Q Consensus 94 ~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~~ 168 (207)
..+..|.+++..|..| +++|||+|..++|+++ +|.|-....- -. ++|||..||.++ +...
T Consensus 7 ~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~-tG~NiEnasy------------~~--t~CAErsAI~~ais~G~~~ 71 (134)
T COG0295 7 ELFALAPEAAANAYAPYSKFKVGAALRTKDGRIY-TGANVENASY------------GL--TVCAERSAIFKAISEGKRK 71 (134)
T ss_pred HHHHHHHHHHHhccCcccCCcEEEEEEeCCCCEE-EEEeeecccc------------cc--hhhHHHHHHHHHHHcCCCc
Confidence 4677788888888887 8999999999999876 9999754311 11 899999999986 3333
Q ss_pred CCCcEEEEc----ccChHHHHHHHHHhC-CCEEEEEecCC
Q psy6804 169 TKRCKLYTS----LFPCNECAKVIIQSG-IKEVIYMCDKQ 203 (207)
Q Consensus 169 ~~~~~ly~T----~ePC~~C~~ai~~ag-i~~vvy~~~~~ 203 (207)
+.-..+|.. ..||.+|.+.|.+.. =...+|..+..
T Consensus 72 ~~~v~v~~~~~~~~sPCG~CRQ~i~Ef~~~d~~ii~~~~~ 111 (134)
T COG0295 72 FDAVVVVADTGKPVSPCGACRQVLAEFCGDDTLIILLPKD 111 (134)
T ss_pred EEEEEEEcCCCCCcCCcHHHHHHHHHhcCCCceEEEecCC
Confidence 333333333 679999999999965 44445554443
No 39
>PRK08298 cytidine deaminase; Validated
Probab=98.86 E-value=2.6e-08 Score=75.88 Aligned_cols=93 Identities=17% Similarity=0.113 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CCCCC
Q psy6804 92 HEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NSADT 169 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~~~~ 169 (207)
++.+++.|.++.+++..|-.+|||+|...||+|+ +|.|-...... . ++.||.+||..+ .+...
T Consensus 4 ~~~L~~~A~~a~~~aY~PYS~VgAAllt~dG~i~-tG~NvEnas~~------------~--t~CAEr~Ai~~av~~G~~~ 68 (136)
T PRK08298 4 EQALYDVAKQLIEQRYPNGWGGAAAMRVEDGTIL-TSVAPEVINAS------------T--ELCMETGAICEAHKLQKRV 68 (136)
T ss_pred HHHHHHHHHHHHHhccCCCCceeEEEEeCCCCEE-EEEeecCCCCC------------c--chhHHHHHHHHHHHCCCce
Confidence 4568999999999999884499999999999987 99996543211 1 789999999876 22221
Q ss_pred CCcEE-EEc--------ccChHHHHHHHHHhCCCEEEEE
Q psy6804 170 KRCKL-YTS--------LFPCNECAKVIIQSGIKEVIYM 199 (207)
Q Consensus 170 ~~~~l-y~T--------~ePC~~C~~ai~~agi~~vvy~ 199 (207)
-.... +.. ..||.+|.+.|.+.+-.-.|+.
T Consensus 69 ~~~i~v~~~~~~~~~~~~sPCG~CRQvl~Ef~~~~~v~~ 107 (136)
T PRK08298 69 THSICVARENEHSELKVLSPCGVCQERLFYWGPDVMCAV 107 (136)
T ss_pred EEEEEEEcCCCcCCCcccCCChhHHHHHHHhCCCCEEEE
Confidence 11111 211 3699999999999865444443
No 40
>PRK05578 cytidine deaminase; Validated
Probab=98.84 E-value=4.9e-08 Score=74.00 Aligned_cols=84 Identities=24% Similarity=0.349 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCCC
Q psy6804 94 YFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSAD 168 (207)
Q Consensus 94 ~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~~ 168 (207)
.+++.|.++.+++..| +.+|||+|.+.+|+|. .|.|-.... ... ++|||..||..+ +...
T Consensus 5 ~L~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~-~G~nvEna~------------~~~--~~CAE~~Ai~~av~~G~~~ 69 (131)
T PRK05578 5 ELIEAAIEASEKAYAPYSKFPVGAALLTDDGRIY-TGCNIENAS------------YGL--TNCAERTAIFKAISEGGGR 69 (131)
T ss_pred HHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEEeeCcc------------ccC--CcCHHHHHHHHHHHcCCCc
Confidence 4788999999999886 6899999999999987 999964321 122 799999999876 2223
Q ss_pred CCCcEEEE----cccChHHHHHHHHHhC
Q psy6804 169 TKRCKLYT----SLFPCNECAKVIIQSG 192 (207)
Q Consensus 169 ~~~~~ly~----T~ePC~~C~~ai~~ag 192 (207)
+....+.. ...||.+|.+.|.+..
T Consensus 70 i~~i~vv~~~~~~~sPCG~CRQ~l~e~~ 97 (131)
T PRK05578 70 LVAIACVGETGEPLSPCGRCRQVLAEFG 97 (131)
T ss_pred eEEEEEEecCCCccCccHHHHHHHHHhC
Confidence 32222222 2579999999999875
No 41
>PRK09027 cytidine deaminase; Provisional
Probab=98.83 E-value=8.5e-08 Score=81.67 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CCC-
Q psy6804 93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NSA- 167 (207)
Q Consensus 93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~~- 167 (207)
+.+.+.|++++++|..| +.+||++|.+.||+|+ .|+|-... ..++ ++.||..||..+ .+.
T Consensus 190 ~~L~~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nvENA------------Aynp--slcaer~Al~~~v~~G~~ 254 (295)
T PRK09027 190 DPLIQAALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYAENA------------AFNP--SLPPLQGALNLLNLSGED 254 (295)
T ss_pred HHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEEcC------------CCCC--cccHHHHHHHHHHHcCCC
Confidence 45889999999999998 7999999999999987 99997543 2345 899999999876 333
Q ss_pred --CCCCcEEEEc----ccChHHHHHHHHHhCCCEEEE
Q psy6804 168 --DTKRCKLYTS----LFPCNECAKVIIQSGIKEVIY 198 (207)
Q Consensus 168 --~~~~~~ly~T----~ePC~~C~~ai~~agi~~vvy 198 (207)
.++...|... ..||.+|...|...+-..+-|
T Consensus 255 ~~~i~~i~lv~~~~~~ispcg~cRq~L~ef~~~~~~~ 291 (295)
T PRK09027 255 FSDIQRAVLVEKADAKLSQWDATQATLKALGCHELER 291 (295)
T ss_pred ccCEEEEEEEeCCCCCcCchHHHHHHHHHhCCCCcEE
Confidence 3455556554 359999999999876555544
No 42
>PRK12411 cytidine deaminase; Provisional
Probab=98.79 E-value=9.2e-08 Score=72.59 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCCC
Q psy6804 94 YFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSAD 168 (207)
Q Consensus 94 ~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~~ 168 (207)
.+...|.++++++..| +.+|||++..++|+|+ +|.|-.... ... ++|||..||..+ +...
T Consensus 5 ~L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~-~G~nvEn~s------------~~~--s~CAE~~Ai~~av~~g~~~ 69 (132)
T PRK12411 5 QLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENAS------------YGL--CNCAERTALFKAVSEGDKE 69 (132)
T ss_pred HHHHHHHHHHHhcCCCccCCceEEEEEeCCCCEE-EEEEeecCC------------CCc--CcCHHHHHHHHHHHCCCCc
Confidence 5788999999999887 6899999999999987 999954321 122 789999999876 2223
Q ss_pred CCCcEEEEc----ccChHHHHHHHHHhC
Q psy6804 169 TKRCKLYTS----LFPCNECAKVIIQSG 192 (207)
Q Consensus 169 ~~~~~ly~T----~ePC~~C~~ai~~ag 192 (207)
++...+... ..||.+|.+.|.+..
T Consensus 70 i~~i~v~~~~~~~~sPCG~CRQ~l~Ef~ 97 (132)
T PRK12411 70 FVAIAIVADTKRPVPPCGACRQVMVELC 97 (132)
T ss_pred eEEEEEEeCCCCCcCCchhHHHHHHHhC
Confidence 322222221 369999999999963
No 43
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=98.65 E-value=2.3e-07 Score=78.55 Aligned_cols=86 Identities=22% Similarity=0.198 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CC-
Q psy6804 92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NS- 166 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~- 166 (207)
++.++..|.++++++..| +++|||++..++|+|+ .|.|-...+... .. ++|||..||.++ .+
T Consensus 22 ~~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy-~GvNvE~~nas~----------~~--tiCAEr~Ai~~Av~~Ge 88 (283)
T TIGR01355 22 PKLLPKLIPKAASYARAPISKFNVGAVGRGSSGRFY-LGVNVEFPGLPL----------HH--SIHAEQFLISHLALNNE 88 (283)
T ss_pred HHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeccCCCCC----------Cc--cccHHHHHHHHHHHcCC
Confidence 456899999999999987 8999999999999987 999964222110 11 799999999886 22
Q ss_pred CCCCCcEEEEcccChHHHHHHHHHhC
Q psy6804 167 ADTKRCKLYTSLFPCNECAKVIIQSG 192 (207)
Q Consensus 167 ~~~~~~~ly~T~ePC~~C~~ai~~ag 192 (207)
..+ ..+.++..||.+|.+.|.+..
T Consensus 89 ~~i--~~Iav~~~PCG~CRQ~l~Ef~ 112 (283)
T TIGR01355 89 RGL--NDLAVSYAPCGHCRQFLNEIR 112 (283)
T ss_pred Cce--EEEEEEeCCcchhHHHHHHhc
Confidence 233 446667889999999999973
No 44
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=98.58 E-value=8.5e-07 Score=75.14 Aligned_cols=87 Identities=13% Similarity=0.145 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--C--C
Q psy6804 93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--N--S 166 (207)
Q Consensus 93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~--~ 166 (207)
+.+++.|.+++++|..| +.+|||+|++.||+|+ .|+|-.... .++ +++||..||..+ . +
T Consensus 175 ~~l~~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~-~G~nvENAa------------y~~--slcaer~Ai~~~v~~g~g 239 (283)
T TIGR01355 175 SHLKQQALKAANRSYAPYSKSPSGVALLDKEGKVY-RGWYIESAA------------FNP--SLGPVQAALVDFMANGGG 239 (283)
T ss_pred HHHHHHHHHHHHhccCCCcCCceeEEEEeCCCCEE-EEEEeecCC------------CCC--cccHHHHHHHHHHHhCCC
Confidence 34889999999999998 7999999999999987 999976432 234 899999999875 1 3
Q ss_pred CCCCC---cEEEEc----ccChHHHHHHHHHhCCC
Q psy6804 167 ADTKR---CKLYTS----LFPCNECAKVIIQSGIK 194 (207)
Q Consensus 167 ~~~~~---~~ly~T----~ePC~~C~~ai~~agi~ 194 (207)
..+.+ .+|--+ ..||.+|...|...+..
T Consensus 240 ~~~~~i~~aVl~e~~~~~vs~~~~~r~~l~~~~p~ 274 (283)
T TIGR01355 240 KGFEDIVRAVLVEKADAKVSHEATARTLLETIAPS 274 (283)
T ss_pred CChhheeEEEEEecCCCccChHHHHHHHHHHhCCC
Confidence 44433 333222 46999999999987655
No 45
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.58 E-value=7.6e-08 Score=84.53 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=47.3
Q ss_pred CCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccc--hhhhhhhccceeeeee
Q psy6804 11 DTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPAT--IASKRMFDAAKVHYWS 68 (207)
Q Consensus 11 ~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~--~~~~~~l~~~gI~v~~ 68 (207)
.++|.+||+|.+||.+|+.+|+.+||++||++. |+++...+ ..+.++|+++||+|..
T Consensus 42 gi~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~~~~~~~~L~~aGi~V~~ 100 (360)
T PRK14719 42 KINANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAGRVYAKNIMEEFQSRGIKVNN 100 (360)
T ss_pred CCCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCccchHHHHHHHHCCCEEEe
Confidence 457999999999999999999999999999999 77653222 1137899999999954
No 46
>PLN02402 cytidine deaminase
Probab=98.49 E-value=1.2e-06 Score=74.60 Aligned_cols=85 Identities=22% Similarity=0.216 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCC-CCChHHHHHHHcc---C
Q psy6804 92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL-DMCHAEMNAILNK---N 165 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~-~~~HAE~~Ai~~~---~ 165 (207)
++-.+.++..+.+.+..| +++|||++...+|+|. .|.|-...+ .++ -++|||..||.++ +
T Consensus 25 ~~ll~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~i~-~GvNVEnas-------------y~l~~tiCAEr~Ai~~av~~G 90 (303)
T PLN02402 25 LQLLPSLVKSAQSLARPPISKYHVGAVGLGSSGRIF-LGVNLEFPG-------------LPLHHSVHAEQFLITNLTLNA 90 (303)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeeeEEEEeCCCCEE-EEEeeecCC-------------CCCCCcccHHHHHHHHHHHcC
Confidence 455677788888888887 7899999999999986 999964332 111 1689999999876 2
Q ss_pred CCCCCCcEEEEcccChHHHHHHHHHhC
Q psy6804 166 SADTKRCKLYTSLFPCNECAKVIIQSG 192 (207)
Q Consensus 166 ~~~~~~~~ly~T~ePC~~C~~ai~~ag 192 (207)
...+ -.+.++..||.+|.+.|.+..
T Consensus 91 ~~~i--~~iaV~~sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 91 EPHL--KYVAVSAAPCGHCRQFFQEIR 115 (303)
T ss_pred CCce--EEEEEEeCCCcccHHHHHHhc
Confidence 2333 346677789999999999873
No 47
>KOG0833|consensus
Probab=98.43 E-value=4.5e-06 Score=65.22 Aligned_cols=93 Identities=19% Similarity=0.156 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---C
Q psy6804 91 WHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---N 165 (207)
Q Consensus 91 ~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~ 165 (207)
..+.....+.++-+.+.+| +++|||+++.++|+|+ .|.|-.... ...++|||.-||.++ +
T Consensus 20 ~~~~L~~l~~~A~~~AyaPyS~fkVGA~~r~ssGrif-~G~NVEn~~--------------~~~sIcAEr~ai~~l~l~g 84 (173)
T KOG0833|consen 20 DPQELLKLARKAMKLAYAPYSKFKVGAAGRASSGRIF-LGVNVENAS--------------YHHSICAERFAIANLALNG 84 (173)
T ss_pred CHHHHHHHHHHHHHhccCCccCCceEEEEEecCCcEE-EeeeecccC--------------CCCcccHHHHHHHHHHHcC
Confidence 3556777777777777787 7999999999899986 999965321 111899999999986 2
Q ss_pred CCCCCCcEEEEc------ccChHHHHHHHHHhCCCEEEEE
Q psy6804 166 SADTKRCKLYTS------LFPCNECAKVIIQSGIKEVIYM 199 (207)
Q Consensus 166 ~~~~~~~~ly~T------~ePC~~C~~ai~~agi~~vvy~ 199 (207)
...+.-+ ..++ ..||..|.+.|.+.+-...++.
T Consensus 85 ~~k~~~~-aV~~~~~~~f~tPCG~CRQfl~Ef~~~~~l~~ 123 (173)
T KOG0833|consen 85 ERKFRAI-AVVAYEDGDFTTPCGVCRQFLREFGNASLLLE 123 (173)
T ss_pred cccceEE-EEEecCCCCcCCCcHHHHHHHHHHhhcceeee
Confidence 2222221 2222 6799999999999988754444
No 48
>PLN02182 cytidine deaminase
Probab=98.33 E-value=5.2e-06 Score=71.66 Aligned_cols=87 Identities=21% Similarity=0.180 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCC-CCChHHHHHHHcc---C
Q psy6804 92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL-DMCHAEMNAILNK---N 165 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~-~~~HAE~~Ai~~~---~ 165 (207)
++.+..++..++..+..| +++|||++...+|+|. .|.|-...+ -++ .++|||..||..+ +
T Consensus 45 ~~ll~~Ll~~A~~~AyaPyS~F~VGAa~l~~sG~iy-~GvNVEnas-------------~pl~~tICAEr~AI~~A~~~G 110 (339)
T PLN02182 45 PIRLPNLIRKAMCLARAPISKYKVGAVGRASSGRVY-LGVNVDFPG-------------LPLHHSIHAEQFLVTNLALNS 110 (339)
T ss_pred HHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeecCC-------------CccCCccCHHHHHHHHHHHCC
Confidence 445555666667777777 7999999999999986 999965432 111 1799999999986 2
Q ss_pred CCCCCCcEEEEc------ccChHHHHHHHHHhC
Q psy6804 166 SADTKRCKLYTS------LFPCNECAKVIIQSG 192 (207)
Q Consensus 166 ~~~~~~~~ly~T------~ePC~~C~~ai~~ag 192 (207)
...+....+.+. ..||.+|.+.|.+..
T Consensus 111 e~~i~~iaVaV~~~~~~~~sPCG~CRQfm~Ef~ 143 (339)
T PLN02182 111 EKDLCELAVAISTDGKEFGTPCGHCLQFLMEMS 143 (339)
T ss_pred CCceEEEEEEEecCCCCCcCCCchhHHHHHHhC
Confidence 222322223322 679999999999985
No 49
>PRK09027 cytidine deaminase; Provisional
Probab=98.24 E-value=8.1e-06 Score=69.67 Aligned_cols=86 Identities=21% Similarity=0.262 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CC-
Q psy6804 92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NS- 166 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~- 166 (207)
++..+.+.-.++..+..| +++|||++...+|+|. .|.|-...+... .. ++|||..||..+ .+
T Consensus 50 ~~l~~~ll~~a~~~AyaPyS~F~VGAa~~~~sG~iy-~GvNvE~~~~s~----------~~--tiCAEr~Ai~~a~~~Ge 116 (295)
T PRK09027 50 DALALALLPLAAACAVTPISHFNVGAIARGVSGNFY-FGANMEFAGAAL----------QQ--TVHAEQSAISHAWLRGE 116 (295)
T ss_pred HHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCCEE-EEEeeccCCCCC----------CC--CcCHHHHHHHHHHHCCC
Confidence 333445555566667776 7999999999999987 999965432000 11 799999999876 22
Q ss_pred CCCCCcEEEEcccChHHHHHHHHHhC
Q psy6804 167 ADTKRCKLYTSLFPCNECAKVIIQSG 192 (207)
Q Consensus 167 ~~~~~~~ly~T~ePC~~C~~ai~~ag 192 (207)
..+ ..+.++..||.+|.+.|.+..
T Consensus 117 ~~i--~~I~v~~sPCG~CRQ~l~E~~ 140 (295)
T PRK09027 117 KAI--ADITVNYTPCGHCRQFMNELN 140 (295)
T ss_pred Cce--EEEEEEecCchhhHHHHHHhC
Confidence 233 445667789999999999864
No 50
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=98.22 E-value=1.2e-06 Score=64.50 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=37.2
Q ss_pred hhcccc--CCCCCCCcEEEEc-----CCCcHHHHHHHHHhCCCEEEEeccCCC
Q psy6804 2 NAILNK--NSADTKRCKLYTS-----LFPCNECAKVIIQSGIKEVIYMCDKHK 47 (207)
Q Consensus 2 nAi~~~--~~~~~~g~~lYvT-----~~PC~~Ca~~i~~~gI~~vv~~~~~~~ 47 (207)
+||.++ .+....+.++|+| ++||.||+++|.+.++++++|..++++
T Consensus 51 ~ai~~~~~~~~~~~~~~i~vs~~~~~~sPC~~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 51 TAIGKAVSEGLRRYLVTWAVSDEGGVWSPCGACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred HHHHHHHHcCCCceEEEEEEECCCCccCCCHHHHHHHHHhCCCCeEEEEEcCC
Confidence 455553 2234579999999 999999999999999999999887654
No 51
>PLN02402 cytidine deaminase
Probab=98.17 E-value=2.4e-05 Score=66.81 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc
Q psy6804 93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK 164 (207)
Q Consensus 93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~ 164 (207)
+.++..|++++++|..| +.+|||+|+..||+|+ .|+|-... ..++ +++||..||..+
T Consensus 193 ~~L~~~A~~a~~~sYaPYS~f~VGaal~~~dG~i~-~G~nvENA------------ay~~--slcAer~Ai~~~ 251 (303)
T PLN02402 193 DDLKNEALEAANKSHAPYSNCPSGVALMDCEGKVY-RGSYMESA------------AYNP--SMGPVQAALVAY 251 (303)
T ss_pred HHHHHHHHHHHHcccCCccCCceeEEEEeCCCCEE-EEEEEEcC------------CCCC--cccHHHHHHHHH
Confidence 45889999999999998 7999999999999987 99997543 1234 899999999986
No 52
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=97.97 E-value=9.9e-06 Score=59.32 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=37.1
Q ss_pred CCCCcEEEEcCCCcHHHHHHHHHhCC-------CEEEEeccCCCCCccchhhhhhhcccee
Q psy6804 11 DTKRCKLYTSLFPCNECAKVIIQSGI-------KEVIYMCDKHKQKPATIASKRMFDAAKV 64 (207)
Q Consensus 11 ~~~g~~lYvT~~PC~~Ca~~i~~~gI-------~~vv~~~~~~~~~~~~~~~~~~l~~~gI 64 (207)
--.|++||||+.||.|||.++..++- .+|||+..++-.- .....|+..|.
T Consensus 74 l~~ga~l~vTlqcCkMCAalv~a~~d~pg~~~~~~vvY~~ed~G~L----ardT~L~r~g~ 130 (136)
T PF14439_consen 74 LPPGARLLVTLQCCKMCAALVCAASDRPGRRVPIDVVYLNEDPGSL----ARDTQLRRRGW 130 (136)
T ss_pred CCCCcEEEEechhHHHHHHHHHHHhhCcCCccceEEEEecCCCCcc----hhHHHHHHHhh
Confidence 34699999999999999999998754 8999998765332 22334555444
No 53
>KOG2771|consensus
Probab=97.78 E-value=1.5e-05 Score=68.46 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=31.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccC
Q psy6804 13 KRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDK 45 (207)
Q Consensus 13 ~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~ 45 (207)
.|.++|+|+|||.||+.+++.+.|+||+|.-..
T Consensus 272 tgydv~ll~EPC~MCsMALvHsRikRvfy~~~~ 304 (344)
T KOG2771|consen 272 TGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPM 304 (344)
T ss_pred ecceEEEecChHHHHHHHHHHHhhhheeeccCC
Confidence 689999999999999999999999999998764
No 54
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=97.77 E-value=4.7e-05 Score=67.02 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=37.3
Q ss_pred HHHHccCCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804 159 NAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 159 ~Ai~~~~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
.||++. .+.|.++|+|.+||..|+.+|+.+||+|||++. ++|
T Consensus 36 ~~l~~l---gi~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d 77 (360)
T PRK14719 36 LSLKNL---KINANFITVSNTPVFQIADDLIAENISEVILLT-DFD 77 (360)
T ss_pred HHHHHc---CCCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCC
Confidence 377776 667999999999999999999999999999999 554
No 55
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=96.72 E-value=0.0099 Score=45.63 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=38.6
Q ss_pred CChHHHHHHHcc--CCCC-CCCcEEEEcccChHHHHHHH----HHhCCCEEEEEec
Q psy6804 153 MCHAEMNAILNK--NSAD-TKRCKLYTSLFPCNECAKVI----IQSGIKEVIYMCD 201 (207)
Q Consensus 153 ~~HAE~~Ai~~~--~~~~-~~~~~ly~T~ePC~~C~~ai----~~agi~~vvy~~~ 201 (207)
..|||+.||.+| .+.. -+..+|||...+|..|-+.| ..+|++++..-+.
T Consensus 80 ~~HAE~~aiqqA~d~G~~~g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 80 KAHAEAGAIQQAYDAGKTVGRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred HHHHHHHHHHHHHHhcCccCCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEec
Confidence 789999999987 2333 56799999999999998755 5689998855443
No 56
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=95.60 E-value=0.01 Score=47.68 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=39.0
Q ss_pred CcEEEEcCCCcHH----HHHHHHHhC-------CCE-EEEeccCCCCCcc---chhhhhhhccceeeeeee
Q psy6804 14 RCKLYTSLFPCNE----CAKVIIQSG-------IKE-VIYMCDKHKQKPA---TIASKRMFDAAKVHYWSE 69 (207)
Q Consensus 14 g~~lYvT~~PC~~----Ca~~i~~~g-------I~~-vv~~~~~~~~~~~---~~~~~~~l~~~gI~v~~~ 69 (207)
--|.|+|.+||.. ||+.|+..- ++= |+++..|..+... ...|.+.|.++|+.+...
T Consensus 75 ~ITwy~SwSPC~~~~~~Ca~~i~~FL~~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv~v~iM 145 (188)
T PF08210_consen 75 RITWYLSWSPCPESDHCCAEKIAEFLKKHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGVQVEIM 145 (188)
T ss_dssp EEEEEESSS--CC----HHHHHHHHHCCC--TTEEEEEEESS--STTSTT---HHHHHHHHHHCTEEEEE-
T ss_pred EEEEEEecCCCcchhhHHHHHHHHHHHHhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCCEEEEc
Confidence 4589999999999 999999752 222 4556666655555 467899999999999875
No 57
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=95.31 E-value=0.055 Score=40.50 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc
Q psy6804 94 YFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK 164 (207)
Q Consensus 94 ~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~ 164 (207)
.....|+++|++|..| +.++|++|++++|+|+ .|++-... ..|| ++.+...||...
T Consensus 35 ~l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~-~G~y~EnA------------AfNP--Sl~PlQ~AL~~~ 92 (124)
T PF08211_consen 35 PLVQAALEAANRSYAPYSKCPSGVALLTSDGRIY-TGRYAENA------------AFNP--SLPPLQAALVQA 92 (124)
T ss_dssp HHHHHHHHHHCT-B-TTT---EEEEEEETTS-EE-EEE-B--T------------TSTT---B-HHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEeec------------ccCC--ChHHHHHHHHHH
Confidence 3788999999999988 7899999999999987 78876532 3466 899999999864
No 58
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=95.03 E-value=0.095 Score=39.28 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=29.5
Q ss_pred CChHHHHHHHcc--C----CCCCCCcEEEEc-------------ccChHHHHHHHHHhCC
Q psy6804 153 MCHAEMNAILNK--N----SADTKRCKLYTS-------------LFPCNECAKVIIQSGI 193 (207)
Q Consensus 153 ~~HAE~~Ai~~~--~----~~~~~~~~ly~T-------------~ePC~~C~~ai~~agi 193 (207)
..|||+.||.++ . ...+++..+++. ..||..|...+.+.||
T Consensus 66 G~cAEv~avn~~L~~~d~~~~~~~~a~~~~~~ir~~~~~~~G~~~~pC~nC~~~l~~~~v 125 (125)
T PF14431_consen 66 GRCAEVIAVNDALWARDAARRSLEGAKITTRRIREPGDPEHGKYAPPCRNCAALLKHFGV 125 (125)
T ss_pred CcccHHHHHHHHHHhhhccccccccccceeeeeecccCCCCCCCCCCCchHHHHHhhcCC
Confidence 789999999875 1 233444444332 4599999999999886
No 59
>PLN02182 cytidine deaminase
Probab=93.70 E-value=0.41 Score=41.76 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEee
Q psy6804 93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGY 129 (207)
Q Consensus 93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~ 129 (207)
......|+++|.+|..| +.+-|.+|.+.+|+|. .|+
T Consensus 202 ~~l~~~Al~AAn~S~APYS~~~SGvAL~~~~G~vy-~G~ 239 (339)
T PLN02182 202 SHLKCKALAAANNSFSPYTESPSGVALLDNDGKWY-RGW 239 (339)
T ss_pred cHHHHHHHHHHHhccCCccCCCceEEEEeCCCCEE-Eee
Confidence 45678899999999998 6789999999999987 454
No 60
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=89.73 E-value=2.5 Score=30.87 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=35.5
Q ss_pred CChHHHHHHHccCCCCCCCcEEEE--cccChHHHHHHHHHhCC---CEEEEEec
Q psy6804 153 MCHAEMNAILNKNSADTKRCKLYT--SLFPCNECAKVIIQSGI---KEVIYMCD 201 (207)
Q Consensus 153 ~~HAE~~Ai~~~~~~~~~~~~ly~--T~ePC~~C~~ai~~agi---~~vvy~~~ 201 (207)
..|-|..+++......+.|=.|.+ ...||+.|.+++.++-= ..|.|...
T Consensus 48 aTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~ 101 (118)
T PF14427_consen 48 ATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWP 101 (118)
T ss_pred hhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecC
Confidence 569999999998666655655554 46799999999998543 34556543
No 61
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=86.00 E-value=0.64 Score=37.30 Aligned_cols=39 Identities=33% Similarity=0.307 Sum_probs=28.2
Q ss_pred CChHHHHHHHccCCCC------CCCcEEEEcccChHH----HHHHHHHh
Q psy6804 153 MCHAEMNAILNKNSAD------TKRCKLYTSLFPCNE----CAKVIIQS 191 (207)
Q Consensus 153 ~~HAE~~Ai~~~~~~~------~~~~~ly~T~ePC~~----C~~ai~~a 191 (207)
..|||+.-|....... .-.-|+|+|-.||.. |+..|+..
T Consensus 51 ~~HAE~~fl~~i~~~~~~~~~~~y~ITwy~SwSPC~~~~~~Ca~~i~~F 99 (188)
T PF08210_consen 51 GRHAELCFLDWIRSWLLFDPDQIYRITWYLSWSPCPESDHCCAEKIAEF 99 (188)
T ss_dssp SB-HHHHHHHHCCCGTB-TTTSEEEEEEEESSS--CC----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccCCCceEEEEEEEecCCCcchhhHHHHHHHHH
Confidence 6999999998763322 124788999999999 99999874
No 62
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=82.00 E-value=1.8 Score=32.33 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=19.2
Q ss_pred CCCCcEEEE----cCCCcHHHHHHHHHhC
Q psy6804 11 DTKRCKLYT----SLFPCNECAKVIIQSG 35 (207)
Q Consensus 11 ~~~g~~lYv----T~~PC~~Ca~~i~~~g 35 (207)
+++...++. ...||.+|.+.|.+.+
T Consensus 66 ~i~~i~vv~~~~~~~sPCG~Crq~l~e~~ 94 (127)
T TIGR01354 66 KFVAIAVADSADDPVSPCGACRQVLAEFA 94 (127)
T ss_pred CeEEEEEEeCCCCCcCccHHHHHHHHHhC
Confidence 455555554 5799999999999987
No 63
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=81.41 E-value=29 Score=32.24 Aligned_cols=81 Identities=25% Similarity=0.325 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC--CCCCCC
Q psy6804 94 YFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN--SADTKR 171 (207)
Q Consensus 94 ~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~--~~~~~~ 171 (207)
.=|..|+.+++.-+. ..+ |++ +||.+|+.|..+..+ +++-..|+.+++ +..++|
T Consensus 399 ~Dl~faw~v~K~vkS--NaI--Vvv-kd~~~vgIgaGQ~sR-------------------vd~t~~Ai~rag~~~~~~~g 454 (513)
T PRK00881 399 KDLLFAWKVVKHVKS--NAI--VYA-KDGQTVGIGAGQMSR-------------------VDSARIAIEKAGDAGLDLKG 454 (513)
T ss_pred HHHHHHHHHHHhcCC--CcE--EEE-eCCeEEEECCCCcch-------------------HHHHHHHHHHHHHhccCcCC
Confidence 457778888886552 223 666 899999999988743 677778888874 444588
Q ss_pred cEEEEc-ccChHHHHHHHHHhCCCEEEE
Q psy6804 172 CKLYTS-LFPCNECAKVIIQSGIKEVIY 198 (207)
Q Consensus 172 ~~ly~T-~ePC~~C~~ai~~agi~~vvy 198 (207)
++|-.- .+|=+-+...+..+|++-|+-
T Consensus 455 av~aSDafFPf~Dtie~aa~~Gv~aIiq 482 (513)
T PRK00881 455 AVLASDAFFPFRDGVEAAAKAGITAIIQ 482 (513)
T ss_pred eEEEeeCCCCchhHHHHHHHcCCeEEEe
Confidence 877544 358889999999999999876
No 64
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=78.95 E-value=0.88 Score=33.79 Aligned_cols=52 Identities=29% Similarity=0.393 Sum_probs=37.6
Q ss_pred CChHHHHHHHccCCCCCC---CcEEEEcccChHH---HHHHHHHh-CCCEEEEEecCCC
Q psy6804 153 MCHAEMNAILNKNSADTK---RCKLYTSLFPCNE---CAKVIIQS-GIKEVIYMCDKQM 204 (207)
Q Consensus 153 ~~HAE~~Ai~~~~~~~~~---~~~ly~T~ePC~~---C~~ai~~a-gi~~vvy~~~~~~ 204 (207)
..|+|..++..+....+. =..||+=++||.. |+..|... =--+|.|..++.+
T Consensus 45 ~~H~E~~il~~l~~~~v~p~~I~elYtEl~PC~~~~~C~~~l~~~~p~a~vt~s~~yg~ 103 (118)
T PF14440_consen 45 KPHSERAILHQLRAHGVPPEQITELYTELEPCELGGYCARMLRNSLPGAEVTYSFDYGT 103 (118)
T ss_pred CCChHHHHHHHHHHcCCcHHHHHHHHHhcccccccchHHHHHHhhCCCCeEEEeccCCC
Confidence 699999999876322222 2568999999999 99999986 2445666665553
No 65
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=78.10 E-value=20 Score=33.28 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=60.7
Q ss_pred HHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC--CCCCCCcE
Q psy6804 96 MASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN--SADTKRCK 173 (207)
Q Consensus 96 m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~--~~~~~~~~ 173 (207)
|..|..+.+.-+ -=|+++-+||..|+.|..+..+ +++-..|+.++. +..++|+.
T Consensus 399 L~FAwkv~k~vK-----SNAIv~akd~~tvGiGaGQ~sR-------------------V~s~riA~~kA~~~~~~~~G~v 454 (511)
T TIGR00355 399 LLFAWKVAKHVK-----SNAIVYAKNNMTVGVGAGQMSR-------------------VGSAKIAGIKADDEGLEAKGSS 454 (511)
T ss_pred HHHHHHHHhhcc-----CceEEEEeCCeEEEecCCCccH-------------------HHHHHHHHHHHHhhCCCccCcE
Confidence 555666666433 2255566999999999998753 788888999883 67778998
Q ss_pred EEEcc-cChHHHHHHHHHhCCCEEEE
Q psy6804 174 LYTSL-FPCNECAKVIIQSGIKEVIY 198 (207)
Q Consensus 174 ly~T~-ePC~~C~~ai~~agi~~vvy 198 (207)
|-.-. +|=.-|......+||+-|+=
T Consensus 455 lASDAFFPF~D~ve~aa~aGi~aIiQ 480 (511)
T TIGR00355 455 LASDAFFPFRDGVEEAAAAGITCIIQ 480 (511)
T ss_pred EEeccccCCCccHHHHHHcCCEEEEc
Confidence 86664 58889999999999999874
No 66
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=77.96 E-value=3.5 Score=31.19 Aligned_cols=40 Identities=28% Similarity=0.471 Sum_probs=30.6
Q ss_pred CChHHHHHHHcc-----CCCCC--CCcEEEEcccChHHHHHHHHHhC
Q psy6804 153 MCHAEMNAILNK-----NSADT--KRCKLYTSLFPCNECAKVIIQSG 192 (207)
Q Consensus 153 ~~HAE~~Ai~~~-----~~~~~--~~~~ly~T~ePC~~C~~ai~~ag 192 (207)
...+|...|... ..... ...+|||...||..|...|.+..
T Consensus 73 ~~DsE~KiL~~ia~~l~~~~~~~~G~i~l~te~~pC~SC~~vi~qF~ 119 (133)
T PF14424_consen 73 NNDSEYKILEDIAKKLGDNPDPSGGTIDLFTELPPCESCSNVIEQFK 119 (133)
T ss_pred cccHHHHHHHHHHHHhccccccCCceEEEEecCCcChhHHHHHHHHH
Confidence 678999888763 22333 35789999999999999988754
No 67
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=75.83 E-value=4.5 Score=31.16 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=27.1
Q ss_pred CCCcEEEEcCCCcHHHHHHHH----HhCCCEEEEecc
Q psy6804 12 TKRCKLYTSLFPCNECAKVII----QSGIKEVIYMCD 44 (207)
Q Consensus 12 ~~g~~lYvT~~PC~~Ca~~i~----~~gI~~vv~~~~ 44 (207)
-+..+|||.-.+|..|-+.|. ++||+++.+-..
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEec
Confidence 568999999888999986665 569999977665
No 68
>PLN02891 IMP cyclohydrolase
Probab=69.64 E-value=39 Score=31.59 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=59.0
Q ss_pred HHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCCCCCcEEE
Q psy6804 96 MASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLY 175 (207)
Q Consensus 96 m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~ly 175 (207)
|..|..+.+.-+ -=|+++-+||..|+.|..+..+ ++|-..|+.++ +..++|+.|-
T Consensus 436 L~FAwkvvK~vK-----SNAIV~akd~~tvGIGaGQ~sR-------------------Vda~~iA~~kA-~~~~~G~vlA 490 (547)
T PLN02891 436 AKFAWLCVKHVK-----SNAIVVAKNNRMLGMGSGQPNR-------------------VESLRIALEKA-GEEAKGAALA 490 (547)
T ss_pred HHHHHHHHhhcc-----CceEEEEeCCeEEEecCCCccH-------------------HHHHHHHHHHh-ccccCCeEEE
Confidence 555666666433 2255666999999999998753 67777899998 6778899886
Q ss_pred Ecc-cChH--HHHHHHHHhCCCEEEE
Q psy6804 176 TSL-FPCN--ECAKVIIQSGIKEVIY 198 (207)
Q Consensus 176 ~T~-ePC~--~C~~ai~~agi~~vvy 198 (207)
.-. +|=. -+......+||+-|+=
T Consensus 491 SDAFFPF~~~D~ve~aa~~Gv~aIIQ 516 (547)
T PLN02891 491 SDAFFPFAWNDAVEEACQAGVKVIAE 516 (547)
T ss_pred ecccCCCCCCccHHHHHHhCCEEEEC
Confidence 664 4775 8999999999998874
No 69
>PF14441 OTT_1508_deam: OTT_1508-like deaminase
Probab=67.53 E-value=14 Score=27.92 Aligned_cols=40 Identities=20% Similarity=0.119 Sum_probs=29.3
Q ss_pred CChHHHHHHHccCCCC-CCCcEEEEcccChHHHHHHHHHhC
Q psy6804 153 MCHAEMNAILNKNSAD-TKRCKLYTSLFPCNECAKVIIQSG 192 (207)
Q Consensus 153 ~~HAE~~Ai~~~~~~~-~~~~~ly~T~ePC~~C~~ai~~ag 192 (207)
.+|||+..+....... ...--+=+|.-||.+|...+...+
T Consensus 67 ~vHaE~~ll~~~~~~~~~~~~yIG~SK~~C~lC~~~~~~~~ 107 (142)
T PF14441_consen 67 SVHAEMQLLDHLERHFDPPPRYIGCSKPSCFLCYLYFQAHG 107 (142)
T ss_pred CeehHHHHHHHHHHhcCCCCCEEEEeCchHHhHHHHHHHhC
Confidence 7999999997642221 123344467889999999999988
No 70
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=67.08 E-value=5.3 Score=30.23 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=18.9
Q ss_pred CcEEEEcCCCcHHHHHHHHHhC
Q psy6804 14 RCKLYTSLFPCNECAKVIIQSG 35 (207)
Q Consensus 14 g~~lYvT~~PC~~Ca~~i~~~g 35 (207)
--+||+-+.||..|...|-+..
T Consensus 98 ~i~l~te~~pC~SC~~vi~qF~ 119 (133)
T PF14424_consen 98 TIDLFTELPPCESCSNVIEQFK 119 (133)
T ss_pred eEEEEecCCcChhHHHHHHHHH
Confidence 4689999999999999888753
No 71
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=61.87 E-value=60 Score=30.03 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCC--CCC
Q psy6804 94 YFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSAD--TKR 171 (207)
Q Consensus 94 ~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~--~~~ 171 (207)
.=|..|+.+++..+. -|+++-+||..|+.|..+..+ +++-..|+.++.... ..|
T Consensus 401 ~dl~Fawkv~k~vKS-----NaIv~akd~~TvGiGaGQ~sR-------------------V~sariA~~kA~~~~~~~~G 456 (515)
T COG0138 401 EDLLFAWKVVKHVKS-----NAIVYAKDGQTVGIGAGQMSR-------------------VDSARIAAEKAGDAGLRAHG 456 (515)
T ss_pred HHHHHHHHHHhHhcc-----ceEEEEcCCeEEEecCCccch-------------------HHHHHHHHHHHHHhhhhccC
Confidence 447778888875542 257777999999999998753 677778888874333 458
Q ss_pred cEEEEcc-cChHHHHHHHHHhCCCEEEE
Q psy6804 172 CKLYTSL-FPCNECAKVIIQSGIKEVIY 198 (207)
Q Consensus 172 ~~ly~T~-ePC~~C~~ai~~agi~~vvy 198 (207)
+.|-.-. +|=+-=......+||+-|+=
T Consensus 457 av~ASDAFFPF~D~i~~aA~aGi~aIIq 484 (515)
T COG0138 457 AVLASDAFFPFPDGIDAAAKAGIKAIIQ 484 (515)
T ss_pred cEEeecccCCCcchHHHHHHcCCeEEEC
Confidence 8876654 48888888999999999874
No 72
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=58.49 E-value=6 Score=30.04 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=35.5
Q ss_pred CChHHHHHHHccCCCCCCCcEEEEc-ccChHH---HHHHHH---HhCCCEEEEEec
Q psy6804 153 MCHAEMNAILNKNSADTKRCKLYTS-LFPCNE---CAKVII---QSGIKEVIYMCD 201 (207)
Q Consensus 153 ~~HAE~~Ai~~~~~~~~~~~~ly~T-~ePC~~---C~~ai~---~agi~~vvy~~~ 201 (207)
..|.|..+-..-.....+..+||++ ..||.. |..++- -.|-+=-||..+
T Consensus 68 ~~HVE~k~Aa~Mr~~g~~~a~vvIN~n~pC~~~~gC~~~l~~iLP~GstLtV~~~~ 123 (135)
T PF14428_consen 68 ASHVEGKAAAWMRRNGIKHATVVINPNGPCGGRDGCDQLLPAILPEGSTLTVHWPG 123 (135)
T ss_pred hhhhhHHHHHHHHHcCCeEEEEEEeCCCCCCCccCHHHHHHHhCCCCCEEEEEeeC
Confidence 6899999765543466788999999 999999 988654 355554555443
No 73
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.85 E-value=71 Score=23.94 Aligned_cols=79 Identities=16% Similarity=-0.026 Sum_probs=55.6
Q ss_pred cEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCcc--chhhhhhhccceeeeeeecccccCccCCCCCCCCcCchhHH
Q psy6804 15 CKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPA--TIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWH 92 (207)
Q Consensus 15 ~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~--~~~~~~~l~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (207)
-.++||..|=+.=...|...|+|.||...++...... ...-....+++|+.+.-.....- .....+
T Consensus 8 d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~------------~iT~~d 75 (130)
T COG3453 8 DRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG------------GITEAD 75 (130)
T ss_pred cceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC------------CCCHHH
Confidence 4688999999988999999999999998887543322 22335578899998655321111 124557
Q ss_pred HHHHHHHHHHHhh
Q psy6804 93 EYFMASAFLVAKR 105 (207)
Q Consensus 93 ~~~m~~A~~~a~~ 105 (207)
-+-|+.|+..++.
T Consensus 76 V~~f~~Al~eaeg 88 (130)
T COG3453 76 VEAFQRALDEAEG 88 (130)
T ss_pred HHHHHHHHHHhCC
Confidence 7789999988873
No 74
>PF05507 MAGP: Microfibril-associated glycoprotein (MAGP); InterPro: IPR008673 This family consists of several mammalian microfibril-associated glycoprotein (MAGP) 1 and 2 proteins. MAGP1 and 2 are components of elastic fibres. MAGP-1 has been proposed to bind a C-terminal region of tropoelastin, the soluble precursor of elastin. MAGP-2 was found to interact with fibrillin-1 and -2, as well as fibulin-1, another component of elastic fibres. This suggests that MAGP-2 may be important in the assembly of microfibrils [].; GO: 0001527 microfibril
Probab=53.96 E-value=13 Score=27.86 Aligned_cols=32 Identities=16% Similarity=0.419 Sum_probs=27.9
Q ss_pred CCCcEEEEcCCCcHHHHHHHHHhCCCEEEEec
Q psy6804 12 TKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 43 (207)
Q Consensus 12 ~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~ 43 (207)
+.=+-||.-+.||.-|...+--..++|+|+-.
T Consensus 88 ~pctRlySvhrP~kqCi~~lCf~slrRmYvIN 119 (137)
T PF05507_consen 88 YPCTRLYSVHRPCKQCIHQLCFYSLRRMYVIN 119 (137)
T ss_pred cceeeehhccccHHHHHHHHHhhceeeEEEec
Confidence 34567999999999999999999999999754
No 75
>PRK13907 rnhA ribonuclease H; Provisional
Probab=53.38 E-value=84 Score=22.76 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=31.9
Q ss_pred CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----CCCCCCCcEEEEcccChHH
Q psy6804 110 VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----NSADTKRCKLYTSLFPCNE 183 (207)
Q Consensus 110 ~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----~~~~~~~~~ly~T~ePC~~ 183 (207)
....|.||.+.++.+...+.-+... -.+||..|+..+ .........+|+..+-+..
T Consensus 16 ~~G~G~vi~~~~~~~~~~~~~~~~t------------------n~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~ 75 (128)
T PRK13907 16 PSGAGVFIKGVQPAVQLSLPLGTMS------------------NHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVER 75 (128)
T ss_pred ccEEEEEEEECCeeEEEEecccccC------------------CcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHH
Confidence 4567888887667655433221111 478999988753 2222345677776554433
No 76
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=53.12 E-value=85 Score=22.74 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=34.0
Q ss_pred EEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCc--cchhhhhhhccceeeeeeec
Q psy6804 16 KLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKP--ATIASKRMFDAAKVHYWSEM 70 (207)
Q Consensus 16 ~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~--~~~~~~~~l~~~gI~v~~~~ 70 (207)
.+||+..|=+.=...|.+.|++.||...++..... ...+-.+..++.|+.+....
T Consensus 8 ~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iP 64 (110)
T PF04273_consen 8 DLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIP 64 (110)
T ss_dssp TEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE--
T ss_pred CeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEee
Confidence 47888999888888999999999999887654321 22223467889999998753
No 77
>PF05528 Coronavirus_5: Coronavirus gene 5 protein; InterPro: IPR008458 Infectious bronchitis virus, a member of Coronaviridae family, has a single-stranded positive-sense RNA genome, which is 27 kb in length. Gene 5 contains two (5a and 5b) open reading frames. The function of the 5a and 5b proteins is unknown [].
Probab=51.59 E-value=8 Score=26.02 Aligned_cols=22 Identities=18% Similarity=0.674 Sum_probs=16.0
Q ss_pred CCcEEEE----cCCCcHHHHHHHHHh
Q psy6804 13 KRCKLYT----SLFPCNECAKVIIQS 34 (207)
Q Consensus 13 ~g~~lYv----T~~PC~~Ca~~i~~~ 34 (207)
.+|+-|+ +.|||+.|+.++-+-
T Consensus 25 ldcvyflN~aGqaE~Cp~CtsLvf~g 50 (82)
T PF05528_consen 25 LDCVYFLNKAGQAEPCPACTSLVFRG 50 (82)
T ss_pred CceEEeecccCccccCcchhhhhccC
Confidence 3566676 679999999875443
No 78
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=51.15 E-value=5.4 Score=21.16 Aligned_cols=9 Identities=44% Similarity=1.029 Sum_probs=1.4
Q ss_pred cCCCcHHHH
Q psy6804 20 SLFPCNECA 28 (207)
Q Consensus 20 T~~PC~~Ca 28 (207)
|..||.||.
T Consensus 2 sCCPCamc~ 10 (27)
T PF08098_consen 2 SCCPCAMCK 10 (27)
T ss_dssp -S--S----
T ss_pred cccccccce
Confidence 566888874
No 79
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=50.64 E-value=3.4 Score=27.23 Aligned_cols=16 Identities=25% Similarity=0.629 Sum_probs=11.7
Q ss_pred EEcCCCcHHHHHHHHH
Q psy6804 18 YTSLFPCNECAKVIIQ 33 (207)
Q Consensus 18 YvT~~PC~~Ca~~i~~ 33 (207)
|=+++|||.|-...+.
T Consensus 3 ~d~lKPCPFCG~~~~~ 18 (64)
T PRK09710 3 YDNVKPCPFCGCPSVT 18 (64)
T ss_pred cccccCCCCCCCceeE
Confidence 6689999998654443
No 80
>KOG1682|consensus
Probab=49.94 E-value=22 Score=29.19 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCC
Q psy6804 96 MASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGM 132 (207)
Q Consensus 96 m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~ 132 (207)
|-.+++.+....+.+..+-+||+..+|++.+.|+|-.
T Consensus 60 M~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LK 96 (287)
T KOG1682|consen 60 MMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLK 96 (287)
T ss_pred HHHHHHHHHhhcccccceeEEEEecCCccccccccHH
Confidence 5567777777766677788999989999999999953
No 81
>PF05507 MAGP: Microfibril-associated glycoprotein (MAGP); InterPro: IPR008673 This family consists of several mammalian microfibril-associated glycoprotein (MAGP) 1 and 2 proteins. MAGP1 and 2 are components of elastic fibres. MAGP-1 has been proposed to bind a C-terminal region of tropoelastin, the soluble precursor of elastin. MAGP-2 was found to interact with fibrillin-1 and -2, as well as fibulin-1, another component of elastic fibres. This suggests that MAGP-2 may be important in the assembly of microfibrils [].; GO: 0001527 microfibril
Probab=49.02 E-value=18 Score=27.22 Aligned_cols=30 Identities=17% Similarity=0.474 Sum_probs=26.9
Q ss_pred CcEEEEcccChHHHHHHHHHhCCCEEEEEe
Q psy6804 171 RCKLYTSLFPCNECAKVIIQSGIKEVIYMC 200 (207)
Q Consensus 171 ~~~ly~T~ePC~~C~~ai~~agi~~vvy~~ 200 (207)
=+.||.-+.||-.|...+--..++|+|...
T Consensus 90 ctRlySvhrP~kqCi~~lCf~slrRmYvIN 119 (137)
T PF05507_consen 90 CTRLYSVHRPCKQCIHQLCFYSLRRMYVIN 119 (137)
T ss_pred eeeehhccccHHHHHHHHHhhceeeEEEec
Confidence 367999999999999999999999998754
No 82
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=48.59 E-value=1e+02 Score=22.24 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=28.2
Q ss_pred EEEEcCCCcHHHHHHHHH---hCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804 16 KLYTSLFPCNECAKVIIQ---SGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS 68 (207)
Q Consensus 16 ~lYvT~~PC~~Ca~~i~~---~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~ 68 (207)
+|| +..-|+.|.++..+ .||.-.++... .......+-.++++..|..+..
T Consensus 2 ~iY-~~~~C~~c~ka~~~L~~~~i~~~~idi~--~~~~~~~el~~l~~~~~~~~~~ 54 (117)
T TIGR01617 2 KVY-GSPNCTTCKKARRWLEANGIEYQFIDIG--EDGPTREELLDILSLLEDGIDP 54 (117)
T ss_pred EEE-eCCCCHHHHHHHHHHHHcCCceEEEecC--CChhhHHHHHHHHHHcCCCHHH
Confidence 466 34459999977664 58875554432 2222233356677777754443
No 83
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=46.89 E-value=30 Score=18.74 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=11.8
Q ss_pred eEEEEEcCCCeEEEEeeeCC
Q psy6804 113 VGAVIVNEDNKIVGTGYNGM 132 (207)
Q Consensus 113 vGaviv~~~g~ii~~g~N~~ 132 (207)
..++|. .+|++.+-|.|..
T Consensus 10 ht~al~-~~g~v~~wG~n~~ 28 (30)
T PF13540_consen 10 HTCALT-SDGEVYCWGDNNY 28 (30)
T ss_dssp EEEEEE--TTEEEEEE--TT
T ss_pred EEEEEE-cCCCEEEEcCCcC
Confidence 344555 7999999999864
No 84
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.15 E-value=74 Score=26.98 Aligned_cols=70 Identities=10% Similarity=0.037 Sum_probs=42.8
Q ss_pred hhhccceeeeeeecccccCccCCCCCCCCcCchhHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEe
Q psy6804 57 RMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTG 128 (207)
Q Consensus 57 ~~l~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g 128 (207)
++|+..|+++...-+-+.+...++-+.........|.+=...++++|+.=..-...=|+|++ +|+||+.-
T Consensus 117 ~~~E~~GfKvigahei~~~ll~~~g~lt~~~P~~~d~~dI~~g~~aA~~lg~lDVGQ~aV~~--~g~vvAvE 186 (279)
T COG3494 117 DFIESRGFKVIGAHEIVPGLLAETGPLTKKEPDNEDLRDIELGIEAANALGALDVGQGAVVV--GGRVVAVE 186 (279)
T ss_pred HHHHhcCcEEecHhhhhhhhccCCCcccCCCCChhhHHHHHHHHHHHHHhccccccceeEEe--CCeEEEEe
Confidence 46889999997744334444444433333334455666677888888864433444555555 79999864
No 85
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=42.94 E-value=44 Score=29.76 Aligned_cols=60 Identities=25% Similarity=0.336 Sum_probs=35.1
Q ss_pred eEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc-------------C-------------CCCCC---CcE
Q psy6804 123 KIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK-------------N-------------SADTK---RCK 173 (207)
Q Consensus 123 ~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~-------------~-------------~~~~~---~~~ 173 (207)
+||+.|.... |... ...+..++-+.-.|||+.|.+-. + ...++ ...
T Consensus 45 ~vvslgTGtK---c~~~--~~~~~~G~~lhD~HAEVlArR~f~r~l~~el~~~~~~~~~sif~~~~~~~~~~Lk~~v~lh 119 (374)
T smart00552 45 QVVSLGTGTK---CISG--EKLSPNGLVLNDCHAEILARRGFLRFLYSELQLFNSSSEDSIFEKNKEGGKYKLKSNVLFH 119 (374)
T ss_pred EEEEEecCcc---ccch--hhhccCCCEEEeCCHHHHHHHHHHHHHHHHHHHHhccCCCceEEECCCCCceEeCCCcEEE
Confidence 6888775543 1111 11233444555689999998731 0 11121 367
Q ss_pred EEEcccChHHHHHH
Q psy6804 174 LYTSLFPCNECAKV 187 (207)
Q Consensus 174 ly~T~ePC~~C~~a 187 (207)
||+|.-||.-+...
T Consensus 120 lYiS~~PCGdAs~~ 133 (374)
T smart00552 120 LYISTLPCGDASIF 133 (374)
T ss_pred EEeccCCccccccc
Confidence 89999999876643
No 86
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=36.02 E-value=15 Score=27.20 Aligned_cols=34 Identities=38% Similarity=0.679 Sum_probs=26.2
Q ss_pred CcEEEEcCCCcHH---HHHHHHHh--CCCEEEEeccCCCC
Q psy6804 14 RCKLYTSLFPCNE---CAKVIIQS--GIKEVIYMCDKHKQ 48 (207)
Q Consensus 14 g~~lYvT~~PC~~---Ca~~i~~~--gI~~vv~~~~~~~~ 48 (207)
=..||+=++||.. |+.+|-+. +.+ |.|..+|..+
T Consensus 66 I~elYtEl~PC~~~~~C~~~l~~~~p~a~-vt~s~~yg~d 104 (118)
T PF14440_consen 66 ITELYTELEPCELGGYCARMLRNSLPGAE-VTYSFDYGTD 104 (118)
T ss_pred HHHHHHhcccccccchHHHHHHhhCCCCe-EEEeccCCCc
Confidence 3568999999998 99999986 554 7777666543
No 87
>PRK09732 hypothetical protein; Provisional
Probab=35.62 E-value=1.1e+02 Score=23.11 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeee
Q psy6804 92 HEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYN 130 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N 130 (207)
-+...+.|++.|++ .+.||-.+|||..|.++..-.-
T Consensus 12 A~~~~~aA~~~A~~---~g~~v~iaVvD~~G~l~a~~Rm 47 (134)
T PRK09732 12 ASAIIAAGQEEAQK---NNWSVSIAVADDGGHLLALSRM 47 (134)
T ss_pred HHHHHHHHHHHHHH---hCCCEEEEEEcCCCCEEEEEEc
Confidence 34556667766664 3679999999999998876544
No 88
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=35.42 E-value=1.6e+02 Score=22.60 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEee
Q psy6804 91 WHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGY 129 (207)
Q Consensus 91 ~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~ 129 (207)
.-+..+..|+..|++- ..+|...|||.+|.+++.-.
T Consensus 12 ~a~~ii~aA~a~a~~~---g~~VtvaVVD~~G~~~a~~R 47 (141)
T COG3193 12 LANKIIAAAVAEAQQL---GVPVTVAVVDAGGHLVALER 47 (141)
T ss_pred HHHHHHHHHHHHHHHh---CCceEEEEECCCCCEEEEEe
Confidence 3345666777777743 78999999999999886543
No 89
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=32.41 E-value=46 Score=24.26 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=21.2
Q ss_pred HHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceee
Q psy6804 28 AKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVH 65 (207)
Q Consensus 28 a~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~ 65 (207)
++....+||.+|||..........-..-.+-++++|++
T Consensus 71 a~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~GL~ 108 (109)
T CHL00139 71 AKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAGLQ 108 (109)
T ss_pred HHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhCCC
Confidence 44555789999999865333322222233345566654
No 90
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=31.61 E-value=47 Score=24.50 Aligned_cols=39 Identities=21% Similarity=0.122 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceee
Q psy6804 27 CAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVH 65 (207)
Q Consensus 27 Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~ 65 (207)
-++.....||++|||......+...-..-.+-+.++|++
T Consensus 78 la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~Gl~ 116 (117)
T PRK05593 78 IAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAGLK 116 (117)
T ss_pred HHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhCCC
Confidence 455667889999999865333322222223345566654
No 91
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=31.31 E-value=39 Score=28.06 Aligned_cols=41 Identities=5% Similarity=0.091 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeee
Q psy6804 27 CAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSE 69 (207)
Q Consensus 27 Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~ 69 (207)
...++...|++||-+..+|.++-.. .-.++|+++|+++...
T Consensus 111 ~~~AL~alg~~RIalvTPY~~~v~~--~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 111 AVDGLAALGVRRISLLTPYTPETSR--PMAQYFAVRGFEIVNF 151 (239)
T ss_pred HHHHHHHcCCCEEEEECCCcHHHHH--HHHHHHHhCCcEEeee
Confidence 4455556699999999999866433 3578999999999885
No 92
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=30.44 E-value=32 Score=22.87 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=11.7
Q ss_pred EcccChHHHHHHHHHh
Q psy6804 176 TSLFPCNECAKVIIQS 191 (207)
Q Consensus 176 ~T~ePC~~C~~ai~~a 191 (207)
++.-||++|......+
T Consensus 13 ~~tLPC~~Cr~HA~~a 28 (70)
T PF04805_consen 13 CSTLPCPECRIHAKEA 28 (70)
T ss_pred HhcCCCHHHHHHHHHH
Confidence 4567999998765544
No 93
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=29.62 E-value=58 Score=21.74 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.4
Q ss_pred CceEEEEEcCCCeEEEE
Q psy6804 111 TRVGAVIVNEDNKIVGT 127 (207)
Q Consensus 111 ~~vGaviv~~~g~ii~~ 127 (207)
.--|++|+++||.+|+.
T Consensus 14 gv~~~~l~~~dG~~i~~ 30 (91)
T PF03259_consen 14 GVRGAVLVDKDGLVIAS 30 (91)
T ss_dssp TEEEEEEEETTSEEEEE
T ss_pred CeeEEEEEcCCCCEEEE
Confidence 34689999999999987
No 94
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=29.48 E-value=57 Score=24.01 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceee
Q psy6804 27 CAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVH 65 (207)
Q Consensus 27 Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~ 65 (207)
-++.....||++|||..........-..-.+-+++.|++
T Consensus 75 la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~Gl~ 113 (114)
T TIGR00060 75 VAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGLN 113 (114)
T ss_pred HHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhCCC
Confidence 345555789999999865433322222223345566654
No 95
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=27.68 E-value=70 Score=23.97 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceee
Q psy6804 27 CAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVH 65 (207)
Q Consensus 27 Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~ 65 (207)
++......||++|||+...+.....-..-.+-..++|++
T Consensus 86 ia~ra~~kgi~~vVfdr~g~~yhgRV~Ala~~AreaGL~ 124 (125)
T COG0256 86 IAERALAKGIEEVVFDRGGYKYHGRVAALADGAREAGLE 124 (125)
T ss_pred HHHHHHHcCCcEEEEcCCCCCcchHHHHHHHHHHHcCcC
Confidence 667777899999999876554432222223334455554
No 96
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=27.15 E-value=36 Score=22.23 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=10.5
Q ss_pred CCceEEEEEcCCCeEEE
Q psy6804 110 VTRVGAVIVNEDNKIVG 126 (207)
Q Consensus 110 ~~~vGaviv~~~g~ii~ 126 (207)
..|+||.|.+.+|+.++
T Consensus 10 ~lPfGA~v~~~~g~~~g 26 (68)
T PF13953_consen 10 PLPFGASVSDEDGNNIG 26 (68)
T ss_dssp E--TT-EEEETTSSEEE
T ss_pred cCCCCcEEEcCCCCEEE
Confidence 46899999987776554
No 97
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=26.98 E-value=62 Score=24.54 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=27.6
Q ss_pred CCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804 10 ADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS 68 (207)
Q Consensus 10 ~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~ 68 (207)
..++|+.++-..== ..=|.+++..||++|+...- ...+.++|++.||.+.-
T Consensus 43 ~~l~ga~vaDKvvG-KAAA~lmv~ggv~~vyA~vi-------S~~Al~~L~~~gI~v~y 93 (134)
T PF08973_consen 43 EFLKGAVVADKVVG-KAAAALMVLGGVKEVYADVI-------SEPALDLLEEAGIKVSY 93 (134)
T ss_dssp ---TT-EEEEEEE--HHHHHHHHHH--SEEEEEEE-------EHHHHHHHHHTT--EEE
T ss_pred hhhhcccHHHHHHh-HHHHHHHHHhcHHHHHHHHH-------hHHHHHHHHHcCCceeH
Confidence 34666666653200 11356677889999986542 23589999999999854
No 98
>KOG2777|consensus
Probab=26.15 E-value=1.1e+02 Score=28.66 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=20.4
Q ss_pred CCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q psy6804 121 DNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAIL 162 (207)
Q Consensus 121 ~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~ 162 (207)
+.+||+.|.... |...+.- +..+..+.-.|||+.|.+
T Consensus 215 ~~~VVslgTGtK---cv~g~~l--s~~G~iLnDcHAEIlARR 251 (542)
T KOG2777|consen 215 DKKVVSLGTGTK---CVSGDKL--SPNGLILNDCHAEILARR 251 (542)
T ss_pred cceEEEeeccCc---ccCccee--CCCCCeeecccHHHHHHH
Confidence 357887765543 1111111 123444446899999987
No 99
>PRK13663 hypothetical protein; Provisional
Probab=25.60 E-value=1.4e+02 Score=27.31 Aligned_cols=38 Identities=21% Similarity=0.118 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCC
Q psy6804 90 EWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGM 132 (207)
Q Consensus 90 ~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~ 132 (207)
..|+.-...|++.|++.. .|.+|.-. +||+|| +|-+..
T Consensus 338 ~~dR~vv~~A~~~a~~t~---~pa~AieL-~DG~Ii-TGKtS~ 375 (493)
T PRK13663 338 PEDRKVVVAAREKAEETG---EPALAIEL-PDGTIV-TGKTSE 375 (493)
T ss_pred hhhhHHHHHHHHHHHHhC---CCeEEEEe-CCCCEE-eCCCcc
Confidence 345555566777777654 45555555 899988 887765
No 100
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=25.56 E-value=86 Score=23.02 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=21.5
Q ss_pred HHHhCCCEEEEeccCCCCCccchhhhhhhccceeee
Q psy6804 31 IIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHY 66 (207)
Q Consensus 31 i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v 66 (207)
+.+.||..|+|+.........-..-.+-+.+.|+++
T Consensus 84 a~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl~f 119 (119)
T PF00861_consen 84 ALEKGIAKVVFDRGGYKYHGRVKALADGAREGGLEF 119 (119)
T ss_dssp HHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTCB-
T ss_pred HHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCCCC
Confidence 346899999998764444333333444566777653
No 101
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=25.49 E-value=5e+02 Score=23.38 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=21.0
Q ss_pred CCCCcEEEEc-ccChHHHHHHHHHhCCCEEEE
Q psy6804 168 DTKRCKLYTS-LFPCNECAKVIIQSGIKEVIY 198 (207)
Q Consensus 168 ~~~~~~ly~T-~ePC~~C~~ai~~agi~~vvy 198 (207)
.++|..|-.- .+|=.-+......+||+-|+=
T Consensus 328 ~l~G~vlASDAFFPF~D~Id~Aa~~GV~aIiQ 359 (390)
T PRK07106 328 TLTGVALGSDAFFPFGDNIERAAKSGVKYIAQ 359 (390)
T ss_pred hcCCeEEEecccCCCCchHHHHHHcCCEEEEC
Confidence 3456666444 347667888888888888764
No 102
>KOG1783|consensus
Probab=25.04 E-value=99 Score=20.91 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEE
Q psy6804 90 EWHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVG 126 (207)
Q Consensus 90 ~~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~ 126 (207)
.--+-||.+|++.+++-..+ ...+|-+.+ +.+.|+-
T Consensus 34 ~~lDgymNiaLe~tee~~ngql~n~ygdaFi-rGnnVly 71 (77)
T KOG1783|consen 34 VCLDGYMNIALESTEEYVNGQLKNKYGDAFI-RGNNVLY 71 (77)
T ss_pred hhhhhHHHHHHHHHHHHhcCcccccccceee-ccccEEE
Confidence 33456999999999987654 567887777 5556653
No 103
>PF13827 DUF4189: Domain of unknown function (DUF4189)
Probab=24.83 E-value=2.3e+02 Score=19.60 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=32.9
Q ss_pred eEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCCCCCcEEEEccc
Q psy6804 113 VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLF 179 (207)
Q Consensus 113 vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~ly~T~e 179 (207)
.||+.++++...++...|... ..=||..||.......-.+|.+.++..
T Consensus 2 wGAIA~~~~~g~~g~s~~~~s-------------------~~~A~~~Al~~C~~~g~~~C~v~~~~~ 49 (100)
T PF13827_consen 2 WGAIAYSPSTGAYGYSWNYPS-------------------REEAEAAALANCGQAGGSDCKVVVSFS 49 (100)
T ss_pred EEEEEEcCCCCcEEEEeCCCC-------------------HHHHHHHHHHHhcCCCCCCCEEEEEeC
Confidence 589999887444667777542 346999999987555556777766543
No 104
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=23.65 E-value=19 Score=22.84 Aligned_cols=8 Identities=50% Similarity=1.111 Sum_probs=6.3
Q ss_pred cCCCcHHH
Q psy6804 20 SLFPCNEC 27 (207)
Q Consensus 20 T~~PC~~C 27 (207)
.|.|||.|
T Consensus 2 ~LkPCPFC 9 (61)
T PF14354_consen 2 ELKPCPFC 9 (61)
T ss_pred CCcCCCCC
Confidence 46788888
No 105
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=23.57 E-value=3.5e+02 Score=20.90 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=40.4
Q ss_pred EEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeecccccCccCCCCCCCCcCchhHHHHH
Q psy6804 16 KLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYF 95 (207)
Q Consensus 16 ~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (207)
.||=+..|=+.-...+...|||.||+..+.+.. .+...++++.||.+.... +.....+ .....+.-
T Consensus 13 ~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~----~~~~~f~~~~~I~l~~~~--~~~~~~~--------~~~~~~~~ 78 (164)
T PF03162_consen 13 GVYRSAQPTPANFPFLERLGLKTIINLRPEPPS----QDFLEFAEENGIKLIHIP--MSSSKDP--------WVPISEEQ 78 (164)
T ss_dssp TEEEESS--HHHHHHHHHHT-SEEEE--SS-------HHHHHHHHHTT-EEEE---------GG--------G----HHH
T ss_pred CccCCCCCChhhHHHHHHCCCceEEEecCCCCC----HHHHHHHhhcCceEEEec--cccccCc--------cccCCHHH
Confidence 578888887777788889999999998875433 234557899999998853 2211100 12234456
Q ss_pred HHHHHHHHh
Q psy6804 96 MASAFLVAK 104 (207)
Q Consensus 96 m~~A~~~a~ 104 (207)
|..|++...
T Consensus 79 v~~aL~~il 87 (164)
T PF03162_consen 79 VAEALEIIL 87 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776554
No 106
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=23.56 E-value=99 Score=19.59 Aligned_cols=18 Identities=44% Similarity=0.571 Sum_probs=13.7
Q ss_pred EEEEcCCCeEEEEeeeCC
Q psy6804 115 AVIVNEDNKIVGTGYNGM 132 (207)
Q Consensus 115 aviv~~~g~ii~~g~N~~ 132 (207)
++.+.+||+||..|+-..
T Consensus 5 ~~~~q~DGkIlv~G~~~~ 22 (55)
T TIGR02608 5 AVAVQSDGKILVAGYVDN 22 (55)
T ss_pred EEEECCCCcEEEEEEeec
Confidence 466668999999887643
No 107
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.96 E-value=1.3e+02 Score=18.58 Aligned_cols=28 Identities=25% Similarity=0.435 Sum_probs=20.5
Q ss_pred EEEEcCCCcHHHHHHHHHh-----CCCEEEEec
Q psy6804 16 KLYTSLFPCNECAKVIIQS-----GIKEVIYMC 43 (207)
Q Consensus 16 ~lYvT~~PC~~Ca~~i~~~-----gI~~vv~~~ 43 (207)
|+.+..-=|.+|++.|-++ ||+.+.+..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~ 33 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDL 33 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEET
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 5666667799999998875 676666543
No 108
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=22.91 E-value=81 Score=22.50 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=16.1
Q ss_pred CCceEEEEEcCCCeEEEEeee
Q psy6804 110 VTRVGAVIVNEDNKIVGTGYN 130 (207)
Q Consensus 110 ~~~vGaviv~~~g~ii~~g~N 130 (207)
...+|++|++.+|+|+-.-.+
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~ 22 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRL 22 (125)
T ss_pred ceEEEEEEECCCCEEEEEEec
Confidence 456899999888998876544
No 109
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=22.46 E-value=2.2e+02 Score=25.36 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.4
Q ss_pred CCCceEEEEEcCCCeEEEEeee
Q psy6804 109 PVTRVGAVIVNEDNKIVGTGYN 130 (207)
Q Consensus 109 ~~~~vGaviv~~~g~ii~~g~N 130 (207)
+...|+++|+|.+|++++...+
T Consensus 336 ~~~~v~vvl~d~~g~~l~~~~~ 357 (361)
T PRK00075 336 GSIEVGVVLFDRDGQILGRSGE 357 (361)
T ss_pred CCceEEEEEEeCCCCEEEECCc
Confidence 4678999999999999976554
No 110
>KOG1228|consensus
Probab=22.25 E-value=50 Score=27.17 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=12.2
Q ss_pred CCcEEEEcCCCcHH
Q psy6804 13 KRCKLYTSLFPCNE 26 (207)
Q Consensus 13 ~g~~lYvT~~PC~~ 26 (207)
.|+-|||||.||+.
T Consensus 74 gg~WLyVTHd~~a~ 87 (256)
T KOG1228|consen 74 GGCWLYVTHDLCAK 87 (256)
T ss_pred CceEEEEecccchh
Confidence 58999999999954
No 111
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=21.88 E-value=87 Score=21.90 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=14.7
Q ss_pred EEEEcCCCeEEEEeeeC
Q psy6804 115 AVIVNEDNKIVGTGYNG 131 (207)
Q Consensus 115 aviv~~~g~ii~~g~N~ 131 (207)
+|+++..|++++.|.|.
T Consensus 2 ~v~~~~~g~~lAiGG~~ 18 (86)
T PF11090_consen 2 CVTIEHKGRPLAIGGNN 18 (86)
T ss_pred eEEEecCCeEEEEcccc
Confidence 56777889999999997
No 112
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=21.56 E-value=3.4e+02 Score=22.26 Aligned_cols=70 Identities=11% Similarity=0.037 Sum_probs=36.1
Q ss_pred hhhhccceeeeeeecccccCccCCC--CCCCCcCchhHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEee
Q psy6804 56 KRMFDAAKVHYWSEMDKMNGVQNGS--PHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGY 129 (207)
Q Consensus 56 ~~~l~~~gI~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~ 129 (207)
.+.|++.|+++....+-...++.+. .....++ +.+..=+..+.+.|+.-..-...= +||| ++|.||+...
T Consensus 59 ~~~le~~G~~vv~~~~~~p~Ll~~~G~lt~~~p~--~~~~~Di~~g~~ia~~lg~lDiGQ-~vVV-~~g~VlAVEa 130 (214)
T PF06230_consen 59 IDELEKEGFKVVGAHEYLPDLLAPEGVLTGRKPS--KEELADIEFGFEIAKALGRLDIGQ-AVVV-KDGRVLAVEA 130 (214)
T ss_pred HHHHHHCCCEEEcHHHhhHHhcCCCccccCCCCC--HHHHHHHHHHHHHHHHhcccCCCc-eEEE-ECCEEEEEec
Confidence 3478899999987433222222222 2222222 223333566666666543222222 3555 6899998754
No 113
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=21.28 E-value=3.4e+02 Score=23.67 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCC
Q psy6804 95 FMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPI 134 (207)
Q Consensus 95 ~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~ 134 (207)
=|..|..+.+..+ -=|+++-+||..|+.|..+..+
T Consensus 266 dL~FAwkv~k~vK-----SNAIv~ak~~~tvGiGaGQ~sR 300 (311)
T smart00798 266 DLLFAWKVVKHVK-----SNAIVYAKDGQTVGIGAGQMSR 300 (311)
T ss_pred HhHHHHHHHhhcc-----cceEEEEeCCeEEEecCCCccH
Confidence 3566777776443 2255555999999999998753
No 114
>PF02457 DisA_N: DisA bacterial checkpoint controller nucleotide-binding; InterPro: IPR003390 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, IPR018906 from INTERPRO that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, IPR000445 from INTERPRO the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis.; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 2FB5_A.
Probab=20.99 E-value=68 Score=23.79 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=15.7
Q ss_pred ceEEEEEcCCCeEEEEeeeC
Q psy6804 112 RVGAVIVNEDNKIVGTGYNG 131 (207)
Q Consensus 112 ~vGaviv~~~g~ii~~g~N~ 131 (207)
.=||+|++. |++++.|.+-
T Consensus 55 hDGAviI~~-~~i~aag~~l 73 (122)
T PF02457_consen 55 HDGAVIIDG-GRIVAAGAIL 73 (122)
T ss_dssp SSSEEEEET-TCCEEEEEEE
T ss_pred CCceEEEEC-CeEEEEEEEe
Confidence 349999976 9999999884
No 115
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=20.96 E-value=3.2e+02 Score=19.42 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=27.2
Q ss_pred EEEEcCCCcHHHHHHHHH---hCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804 16 KLYTSLFPCNECAKVIIQ---SGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS 68 (207)
Q Consensus 16 ~lYvT~~PC~~Ca~~i~~---~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~ 68 (207)
+||.+ -=|+.|.++.-+ .||.=.++... .......+-.+++...|+.+..
T Consensus 2 ~iY~~-~~C~~c~ka~~~L~~~~i~~~~idi~--~~~~~~~el~~~~~~~~~~~~~ 54 (111)
T cd03036 2 KFYEY-PKCSTCRKAKKWLDEHGVDYTAIDIV--EEPPSKEELKKWLEKSGLPLKK 54 (111)
T ss_pred EEEEC-CCCHHHHHHHHHHHHcCCceEEeccc--CCcccHHHHHHHHHHcCCCHHH
Confidence 45643 249999987764 47774443322 1222222345677777765444
No 116
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=20.55 E-value=99 Score=25.23 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=13.3
Q ss_pred HHHHHhCCCEEEEeccCCC
Q psy6804 29 KVIIQSGIKEVIYMCDKHK 47 (207)
Q Consensus 29 ~~i~~~gI~~vv~~~~~~~ 47 (207)
+.....||++|||......
T Consensus 174 erAl~kGI~kVvFDRgGy~ 192 (211)
T PTZ00032 174 RKALSKGISKVRFDRAHYK 192 (211)
T ss_pred HHHHHCCCCEEEEeCCCCe
Confidence 3445679999999765443
No 117
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=20.54 E-value=45 Score=25.32 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=8.4
Q ss_pred EcccChHHHHH
Q psy6804 176 TSLFPCNECAK 186 (207)
Q Consensus 176 ~T~ePC~~C~~ 186 (207)
.-.+||++|.-
T Consensus 31 ~gl~PC~LCiy 41 (135)
T PRK00611 31 LNVEPCVLCYY 41 (135)
T ss_pred cCCCCchHHHH
Confidence 34799999964
No 118
>TIGR00159 conserved hypothetical protein TIGR00159. These proteins have no detectable global or local homology to any protein of known function. Members are restricted to the bacteria and found broadly in lineages other than the Proteobacteria.
Probab=20.46 E-value=89 Score=25.62 Aligned_cols=42 Identities=31% Similarity=0.298 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHc
Q psy6804 112 RVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILN 163 (207)
Q Consensus 112 ~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~ 163 (207)
+=||+|+ ++|+|++.|+--.++. . .....+++.|.--.-+.+
T Consensus 125 HDGAvII-~~~rI~aA~~~Lpls~---~------~~~~~lGtRHRAA~Gise 166 (211)
T TIGR00159 125 HDGAVII-RDNKIVAAGSYLPLSE---Q------SISKSLGTRHRAALGISE 166 (211)
T ss_pred CCcEEEE-ECCEEEEEEEEecCCC---C------CCCCccChHHHHHHHHHH
Confidence 3499999 6899998887654331 0 011234488876555554
No 119
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=20.28 E-value=5.2e+02 Score=21.65 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=39.3
Q ss_pred CceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc------CCCCCCCcEEEEcccChHHH
Q psy6804 111 TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK------NSADTKRCKLYTSLFPCNEC 184 (207)
Q Consensus 111 ~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~------~~~~~~~~~ly~T~ePC~~C 184 (207)
.--+|+|++.+|+++...-.- ..|- |+.+. .+..++++.|++|..==..=
T Consensus 158 gvH~aal~~~~g~~l~~~EDI---------------------GRHN---AvDKviG~all~g~~~~~~~l~~SGR~s~em 213 (263)
T PRK00724 158 GVHAAALLCPDGELLAVREDV---------------------GRHN---ALDKLIGAALRAGIPLRDGALLVSGRASSEM 213 (263)
T ss_pred ceeEEEEEcCCCCEEEEEecC---------------------chhH---HHHHHHHHHHHcCCCccCcEEEEeCCchHHH
Confidence 334677787788887543221 3443 55543 56778888888887643333
Q ss_pred HHHHHHhCCCEEEE
Q psy6804 185 AKVIIQSGIKEVIY 198 (207)
Q Consensus 185 ~~ai~~agi~~vvy 198 (207)
....+.+||.-|+=
T Consensus 214 v~Ka~~aGipvivS 227 (263)
T PRK00724 214 VQKAAMAGIPILVA 227 (263)
T ss_pred HHHHHHcCCcEEEE
Confidence 44456788887753
Done!